Citrus Sinensis ID: 028002
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 215 | 2.2.26 [Sep-21-2011] | |||||||
| Q42539 | 230 | Protein-L-isoaspartate O- | yes | no | 0.995 | 0.930 | 0.775 | 2e-98 | |
| Q43209 | 230 | Protein-L-isoaspartate O- | N/A | no | 0.990 | 0.926 | 0.732 | 3e-92 | |
| P80895 | 227 | Protein-L-isoaspartate(D- | yes | no | 0.986 | 0.933 | 0.529 | 6e-56 | |
| P15246 | 227 | Protein-L-isoaspartate(D- | yes | no | 0.986 | 0.933 | 0.525 | 2e-55 | |
| P23506 | 227 | Protein-L-isoaspartate(D- | no | no | 0.986 | 0.933 | 0.525 | 3e-55 | |
| Q5F3N1 | 228 | Protein-L-isoaspartate(D- | no | no | 0.967 | 0.912 | 0.535 | 3e-55 | |
| P22062 | 227 | Protein-L-isoaspartate(D- | yes | no | 0.986 | 0.933 | 0.525 | 5e-55 | |
| Q5RA89 | 227 | Protein-L-isoaspartate(D- | yes | no | 0.986 | 0.933 | 0.525 | 7e-55 | |
| P22061 | 227 | Protein-L-isoaspartate(D- | no | no | 0.986 | 0.933 | 0.520 | 7e-55 | |
| Q4R5H0 | 227 | Protein-L-isoaspartate(D- | N/A | no | 0.986 | 0.933 | 0.525 | 7e-55 |
| >sp|Q42539|PIMT_ARATH Protein-L-isoaspartate O-methyltransferase OS=Arabidopsis thaliana GN=PCM PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 357 bits (917), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 166/214 (77%), Positives = 193/214 (90%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
MVE+LQ++G++TS +V++ ME +DR FV D + YVDSPM+IGYN TISAPHMHA CLQ
Sbjct: 16 MVENLQNHGIVTSDEVAKAMEAVDRGVFVTDRSSAYVDSPMSIGYNVTISAPHMHAMCLQ 75
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LLE++LKPGM LD+GSGTGYLTACFA+MVG +GRA+GVEHIPELV SS++NIE SAA+P
Sbjct: 76 LLEKHLKPGMRVLDVGSGTGYLTACFAVMVGTEGRAIGVEHIPELVASSVKNIEASAASP 135
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 180
LKEGSL+VHVGDGR+GW EFAPYDAIHVGAAAPEIP+ALIDQLKPGGR+VIPVGNIFQD
Sbjct: 136 FLKEGSLAVHVGDGRQGWAEFAPYDAIHVGAAAPEIPEALIDQLKPGGRLVIPVGNIFQD 195
Query: 181 LKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRG 214
L+VVDKN DGS+SI ETSVRYVPLTSR+AQLRG
Sbjct: 196 LQVVDKNSDGSVSIKDETSVRYVPLTSREAQLRG 229
|
Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 7 |
| >sp|Q43209|PIMT_WHEAT Protein-L-isoaspartate O-methyltransferase OS=Triticum aestivum GN=PCM PE=1 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (865), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 156/213 (73%), Positives = 189/213 (88%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
+VE+L+ YGV+ + KV+EVMETIDRA FVP+G PY DSPM IGYNATISAPHMHATCL+
Sbjct: 16 LVEYLKQYGVVRTDKVAEVMETIDRALFVPEGFTPYTDSPMPIGYNATISAPHMHATCLE 75
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL++ L+PGMHALD+GSG+GYLTACFA+MVGP+GRAVG+EHIPELVV+S +N+E+SAAA
Sbjct: 76 LLKDYLQPGMHALDVGSGSGYLTACFAMMVGPEGRAVGIEHIPELVVASTENVERSAAAA 135
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 180
L+K+GSLS HV DGR GWP+ APYDAIHVGAAAPEIP+ L++QLKPGGRMVIPVG QD
Sbjct: 136 LMKDGSLSFHVSDGRLGWPDAAPYDAIHVGAAAPEIPRPLLEQLKPGGRMVIPVGTYSQD 195
Query: 181 LKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLR 213
L+V+DK+ DGS S+ ++ SVRYVPLTSR AQL+
Sbjct: 196 LQVIDKSADGSTSVRNDASVRYVPLTSRSAQLQ 228
|
Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P80895|PIMT_PIG Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa GN=PCMT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 217 bits (552), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 115/217 (52%), Positives = 147/217 (67%), Gaps = 5/217 (2%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ ATISAPHMHA L+
Sbjct: 13 LIHNLRKNGIIKTDKVFEVMLATDRSHYAK--CNPYMDSPQSIGFQATISAPHMHAYALE 70
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL + L G ALD+GSG+G LTACFA MVGP G+ +G++HI ELV SI N+ K
Sbjct: 71 LLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPM- 129
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--NIF 178
LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG
Sbjct: 130 LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 189
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 190 QMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P15246|PIMT_BOVIN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Bos taurus GN=PCMT1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 215 bits (547), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 146/217 (67%), Gaps = 5/217 (2%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ ATISAPHMHA L+
Sbjct: 13 LIHNLRKNGIIKTDKVFEVMLATDRSHYAK--CNPYMDSPQSIGFQATISAPHMHAYALE 70
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL + L G ALD+GSG+G LTACFA MVGP G+ +G++HI ELV SI N+ K
Sbjct: 71 LLFDQLNEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPM- 129
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--NIF 178
LL G + + VGDGR G+ APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG
Sbjct: 130 LLSSGRVQLVVGDGRMGYAAEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 189
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 190 QMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P23506|PIMT_MOUSE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Mus musculus GN=Pcmt1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 214 bits (546), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 148/217 (68%), Gaps = 5/217 (2%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ +L+ G+I + KV EVM DR+ + + PY+DSP +IG+ ATISAPHMHA L+
Sbjct: 13 LIHNLRKNGIIKTDKVFEVMLATDRSHYAK--SNPYMDSPQSIGFQATISAPHMHAYALE 70
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV SI N++K
Sbjct: 71 LLFDQLHEGAKALDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDDSITNVKKDDPM- 129
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--NIF 178
LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG
Sbjct: 130 LLSSGRVRLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 189
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 190 QMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q5F3N1|PIMT_CHICK Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Gallus gallus GN=PCMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 214 bits (546), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/213 (53%), Positives = 147/213 (69%), Gaps = 5/213 (2%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ +L+ G+I S KV EVM DR + PY+DSP +IG+ ATISAPHMHA L+
Sbjct: 13 LIHNLRKNGIIKSDKVFEVMLATDRCHYAK--YNPYMDSPQSIGFQATISAPHMHAYALE 70
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL + L G ALD+GSG+G LTACF+ MVGP+G+ VG++HI ELV SI N++K
Sbjct: 71 LLSDQLHEGAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVKKDDPT- 129
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--NIF 178
LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG
Sbjct: 130 LLSSGRVKLIVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 189
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQ 211
Q L+ DK +DGS+ + V YVPLT ++ Q
Sbjct: 190 QMLEQYDKLEDGSVKMKPLMGVIYVPLTDKEKQ 222
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Gallus gallus (taxid: 9031) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P22062|PIMT_RAT Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Rattus norvegicus GN=Pcmt1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 214 bits (544), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 148/217 (68%), Gaps = 5/217 (2%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ +L+ G+I + KV EVM DR+ + + PY+DSP +IG+ ATISAPHMHA L+
Sbjct: 13 LIHNLRKNGIIKTDKVFEVMLATDRSHYAK--SNPYMDSPQSIGFQATISAPHMHAYALE 70
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV SI N++K
Sbjct: 71 LLFDQLHEGAKALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDDSITNVKKDDPM- 129
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--NIF 178
LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG
Sbjct: 130 LLSSGRVRLVVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 189
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 190 QMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q5RA89|PIMT_PONAB Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Pongo abelii GN=PCMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 146/217 (67%), Gaps = 5/217 (2%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ ATISAPHMHA L+
Sbjct: 13 LIHNLRKNGIIKTDKVFEVMLATDRSHYAK--CNPYMDSPQSIGFQATISAPHMHAYALE 70
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV SI N+ K
Sbjct: 71 LLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNVRKDDPT- 129
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--NIF 178
LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG
Sbjct: 130 LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 189
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 190 QMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|P22061|PIMT_HUMAN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Homo sapiens GN=PCMT1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 213 bits (542), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 146/217 (67%), Gaps = 5/217 (2%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ ATISAPHMHA L+
Sbjct: 13 LIHNLRKNGIIKTDKVFEVMLATDRSHYAK--CNPYMDSPQSIGFQATISAPHMHAYALE 70
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV S+ N+ K
Sbjct: 71 LLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT- 129
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--NIF 178
LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG
Sbjct: 130 LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 189
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 190 QMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
| >sp|Q4R5H0|PIMT_MACFA Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Macaca fascicularis GN=PCMT1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 213 bits (542), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 146/217 (67%), Gaps = 5/217 (2%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ ATISAPHMHA L+
Sbjct: 13 LIHNLRKNGIIKTDKVFEVMLATDRSHYAE--CNPYMDSPQSIGFQATISAPHMHAYALE 70
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV SI N+ K
Sbjct: 71 LLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNVRKDDPT- 129
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--NIF 178
LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG
Sbjct: 130 LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 189
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 190 QMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein. Macaca fascicularis (taxid: 9541) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 215 | ||||||
| 224135985 | 230 | predicted protein [Populus trichocarpa] | 1.0 | 0.934 | 0.911 | 1e-113 | |
| 255540441 | 309 | protein-l-isoaspartate O-methyltransfera | 0.995 | 0.692 | 0.901 | 1e-110 | |
| 224121858 | 314 | predicted protein [Populus trichocarpa] | 1.0 | 0.684 | 0.888 | 1e-110 | |
| 225456838 | 230 | PREDICTED: protein-L-isoaspartate O-meth | 1.0 | 0.934 | 0.874 | 1e-106 | |
| 356508746 | 307 | PREDICTED: protein-L-isoaspartate O-meth | 1.0 | 0.700 | 0.860 | 1e-106 | |
| 255635264 | 230 | unknown [Glycine max] | 1.0 | 0.934 | 0.860 | 1e-106 | |
| 388504744 | 229 | unknown [Lotus japonicus] | 0.995 | 0.934 | 0.845 | 1e-103 | |
| 388495586 | 229 | unknown [Lotus japonicus] gi|388502466|g | 0.995 | 0.934 | 0.850 | 1e-103 | |
| 449501340 | 311 | PREDICTED: protein-L-isoaspartate O-meth | 0.990 | 0.684 | 0.830 | 1e-99 | |
| 449440610 | 241 | PREDICTED: protein-L-isoaspartate O-meth | 0.990 | 0.883 | 0.830 | 2e-99 |
| >gi|224135985|ref|XP_002322210.1| predicted protein [Populus trichocarpa] gi|222869206|gb|EEF06337.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/215 (91%), Positives = 207/215 (96%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
MVEHLQHYGVI+SKKVSEVMETIDRA FVPDGTP YVDSPMAIGYNATISAPHMHATCLQ
Sbjct: 16 MVEHLQHYGVISSKKVSEVMETIDRALFVPDGTPAYVDSPMAIGYNATISAPHMHATCLQ 75
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LLEENLKPGMHALD+GSGTGYLTAC ALMVGPQGRAVGVEHIPEL SS++NIEKSAAAP
Sbjct: 76 LLEENLKPGMHALDVGSGTGYLTACLALMVGPQGRAVGVEHIPELANSSLKNIEKSAAAP 135
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 180
LLKEGSLS+HVGDGR+GWPEFAPYDAIHVGAAAPEIPQ L+DQLKPGGRMVIPVGNIFQD
Sbjct: 136 LLKEGSLSIHVGDGRQGWPEFAPYDAIHVGAAAPEIPQPLLDQLKPGGRMVIPVGNIFQD 195
Query: 181 LKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
LKVVDK +DGS+S+ SETSVRYVPLTSRDAQLRG+
Sbjct: 196 LKVVDKKEDGSISVRSETSVRYVPLTSRDAQLRGY 230
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540441|ref|XP_002511285.1| protein-l-isoaspartate O-methyltransferase, putative [Ricinus communis] gi|223550400|gb|EEF51887.1| protein-l-isoaspartate O-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/214 (90%), Positives = 205/214 (95%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
MVEHLQHYGVI+S+KV EVMETIDRA FVPDGT YVDSPM IGYNATISAPHMHATCLQ
Sbjct: 96 MVEHLQHYGVISSRKVVEVMETIDRALFVPDGTQAYVDSPMPIGYNATISAPHMHATCLQ 155
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LLEE+LKPGMHALD+GSGTGYLTACFA+MVGPQGRAVGVEHIPELV SS++NI KSAAAP
Sbjct: 156 LLEEHLKPGMHALDVGSGTGYLTACFAIMVGPQGRAVGVEHIPELVTSSVKNILKSAAAP 215
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 180
LLKEG LSVH+GDGR+GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD
Sbjct: 216 LLKEGFLSVHIGDGRQGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 275
Query: 181 LKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRG 214
LKV+DKNQDGS+S+ SETSVRYVPLTSRDAQLRG
Sbjct: 276 LKVIDKNQDGSISVRSETSVRYVPLTSRDAQLRG 309
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121858|ref|XP_002318690.1| predicted protein [Populus trichocarpa] gi|222859363|gb|EEE96910.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/215 (88%), Positives = 205/215 (95%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
+VE LQ+YG I+SKKVSEVMETIDRA FVPDGTP YVDSPMAIGYNATISAPHMHATCLQ
Sbjct: 100 LVEQLQNYGTISSKKVSEVMETIDRALFVPDGTPAYVDSPMAIGYNATISAPHMHATCLQ 159
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LLEENLK GMH LD+GSGTGYLTACFALMVGPQGRAVGVEHIPEL SSI+NI+KSAAAP
Sbjct: 160 LLEENLKSGMHVLDVGSGTGYLTACFALMVGPQGRAVGVEHIPELAGSSIKNIKKSAAAP 219
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 180
LLKEGSLS+HVGDGR+GWPEFAPYDAIHVGAAAPEIPQ L+DQLKPGGRMVIPVGNIFQD
Sbjct: 220 LLKEGSLSIHVGDGRQGWPEFAPYDAIHVGAAAPEIPQPLLDQLKPGGRMVIPVGNIFQD 279
Query: 181 LKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
LKV+DKN+DGS+S+ SETSVRYVPLTSRDAQLRG+
Sbjct: 280 LKVIDKNEDGSISVRSETSVRYVPLTSRDAQLRGY 314
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456838|ref|XP_002278792.1| PREDICTED: protein-L-isoaspartate O-methyltransferase [Vitis vinifera] gi|297733662|emb|CBI14909.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/215 (87%), Positives = 200/215 (93%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
MVEHLQ YGVI SKKV++VMET+DRA FVPDG PPYVDSPM IGYNATISAPHMHATCL+
Sbjct: 16 MVEHLQRYGVINSKKVAQVMETVDRALFVPDGNPPYVDSPMQIGYNATISAPHMHATCLE 75
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL+ENL+PGMHALD+GSGTGYLTACFALMVGPQG AVGVEHIPELV SSI+NIEKSAAAP
Sbjct: 76 LLQENLQPGMHALDVGSGTGYLTACFALMVGPQGCAVGVEHIPELVASSIKNIEKSAAAP 135
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 180
LLKEGSL +H GDGR GWPE APYDAIHVGAAAPEIPQ LIDQLKPGGRMVIPVGNIFQD
Sbjct: 136 LLKEGSLKLHAGDGRLGWPECAPYDAIHVGAAAPEIPQPLIDQLKPGGRMVIPVGNIFQD 195
Query: 181 LKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
LKVVDKN DGS+SI SETSVRYVPLTSR+AQLR +
Sbjct: 196 LKVVDKNLDGSISIRSETSVRYVPLTSREAQLRDY 230
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508746|ref|XP_003523115.1| PREDICTED: protein-L-isoaspartate O-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/215 (86%), Positives = 199/215 (92%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
+VE LQ YGVITS KV+EVMET+DRA FVPDG PY DSPMAIGYNATISAPHMHA CLQ
Sbjct: 93 LVERLQRYGVITSSKVAEVMETVDRALFVPDGAAPYDDSPMAIGYNATISAPHMHAMCLQ 152
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LLEENL+PGMHALD+GSGTGYLTACFALMVGPQGRAVGVEHIPELV SI+NI+KSAAA
Sbjct: 153 LLEENLQPGMHALDVGSGTGYLTACFALMVGPQGRAVGVEHIPELVSFSIENIQKSAAAA 212
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 180
LK+GSLSVH GDGR+GWPEFAPYDAIHVGAAAPEIPQ LIDQLKPGGRMVIPVGNIFQD
Sbjct: 213 QLKDGSLSVHAGDGRQGWPEFAPYDAIHVGAAAPEIPQPLIDQLKPGGRMVIPVGNIFQD 272
Query: 181 LKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
LKVVDKN DGS+S+ +ETSVRYVPLTSR+AQLRG+
Sbjct: 273 LKVVDKNSDGSISVRTETSVRYVPLTSREAQLRGY 307
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255635264|gb|ACU17986.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/215 (86%), Positives = 199/215 (92%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
+VE LQ YGVITS KV+EVMET+DRA FVPDG PY DSPMAIGYNATISAPHMHA CLQ
Sbjct: 16 LVERLQRYGVITSSKVAEVMETVDRALFVPDGAAPYDDSPMAIGYNATISAPHMHAMCLQ 75
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LLEENL+PGMHALD+GSGTGYLTACFALMVGPQGRAVGVEHIPELV SI+NI+KSAAA
Sbjct: 76 LLEENLQPGMHALDVGSGTGYLTACFALMVGPQGRAVGVEHIPELVSFSIENIQKSAAAA 135
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 180
LK+GSLSVH GDGR+GWPEFAPYDAIHVGAAAPEIPQ LIDQLKPGGRMVIPVGNIFQD
Sbjct: 136 QLKDGSLSVHAGDGRQGWPEFAPYDAIHVGAAAPEIPQPLIDQLKPGGRMVIPVGNIFQD 195
Query: 181 LKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
LKVVDKN DGS+S+ +ETSVRYVPLTSR+AQLRG+
Sbjct: 196 LKVVDKNSDGSISVRTETSVRYVPLTSREAQLRGY 230
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388504744|gb|AFK40438.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/214 (84%), Positives = 198/214 (92%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
MVE+LQ YGVI S+KV+E+METIDR FVP+G PYVDSPM IGYNATISAPHMHATCLQ
Sbjct: 16 MVENLQQYGVIKSRKVAEIMETIDRGLFVPNGAQPYVDSPMLIGYNATISAPHMHATCLQ 75
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LLEENL+PGM ALD+GSGTGYLTACFALMVGPQGR +GVEHIPELV SIQNIEKSAAAP
Sbjct: 76 LLEENLQPGMRALDVGSGTGYLTACFALMVGPQGRTIGVEHIPELVSFSIQNIEKSAAAP 135
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 180
LK+GSLSV+V DGR+GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG IFQD
Sbjct: 136 QLKDGSLSVYVTDGRQGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGTIFQD 195
Query: 181 LKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRG 214
LKVVDKN DG++SI +ETSVRYVPLTS++AQL+G
Sbjct: 196 LKVVDKNSDGAISIRTETSVRYVPLTSKEAQLQG 229
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388495586|gb|AFK35859.1| unknown [Lotus japonicus] gi|388502466|gb|AFK39299.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/214 (85%), Positives = 198/214 (92%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
MVE+LQ YGVI S+KV+E+METIDR FVP+G PYVDSPM IGYNATISAPHMHATCLQ
Sbjct: 16 MVENLQQYGVIKSRKVAEIMETIDRGLFVPNGAQPYVDSPMLIGYNATISAPHMHATCLQ 75
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LLEENL+PGM ALD+GSGTGYLTACFALMVGPQGR VGVEHIPELV SIQNIEKSAAAP
Sbjct: 76 LLEENLQPGMRALDVGSGTGYLTACFALMVGPQGRTVGVEHIPELVSFSIQNIEKSAAAP 135
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 180
LK+GSLSV+V DGR+GWPE APYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD
Sbjct: 136 QLKDGSLSVYVTDGRQGWPESAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 195
Query: 181 LKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRG 214
LKVVDKN DG++SI +ETSVRYVPLTS++AQL+G
Sbjct: 196 LKVVDKNSDGAISIRTETSVRYVPLTSKEAQLQG 229
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449501340|ref|XP_004161342.1| PREDICTED: protein-L-isoaspartate O-methyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 177/213 (83%), Positives = 196/213 (92%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
MVE LQ YGV+ SK+VSEVME+IDRA FVPD PPYVD+P+ IGYNATISAPHMHATCLQ
Sbjct: 97 MVEKLQTYGVVRSKRVSEVMESIDRAFFVPDDVPPYVDTPVPIGYNATISAPHMHATCLQ 156
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LLE++L+PGM ALD+GSGTGYLTACFALMVGP+GR VGVEHIPELV SS++NI+KSAAAP
Sbjct: 157 LLEKHLQPGMRALDVGSGTGYLTACFALMVGPEGRVVGVEHIPELVASSMENIKKSAAAP 216
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 180
LLKEGSLS+HVGDGR+GW E APYDAIHVGAAA EIP ALIDQLKPGGRMVIPVGN+FQD
Sbjct: 217 LLKEGSLSLHVGDGRQGWAECAPYDAIHVGAAAAEIPPALIDQLKPGGRMVIPVGNVFQD 276
Query: 181 LKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLR 213
LKVVDK+ DGS+SI ETSVRYVPLTSR+AQLR
Sbjct: 277 LKVVDKDSDGSVSIHDETSVRYVPLTSREAQLR 309
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440610|ref|XP_004138077.1| PREDICTED: protein-L-isoaspartate O-methyltransferase-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 177/213 (83%), Positives = 196/213 (92%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
MVE LQ YGV+ SK+VSEVME+IDRA FVPD PPYVD+P+ IGYNATISAPHMHATCLQ
Sbjct: 27 MVEKLQTYGVVRSKRVSEVMESIDRAFFVPDDVPPYVDTPVPIGYNATISAPHMHATCLQ 86
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LLE++L+PGM ALD+GSGTGYLTACFALMVGP+GR VGVEHIPELV SS++NI+KSAAAP
Sbjct: 87 LLEKHLQPGMRALDVGSGTGYLTACFALMVGPEGRVVGVEHIPELVASSMENIKKSAAAP 146
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 180
LLKEGSLS+HVGDGR+GW E APYDAIHVGAAA EIP ALIDQLKPGGRMVIPVGN+FQD
Sbjct: 147 LLKEGSLSLHVGDGRQGWAECAPYDAIHVGAAAAEIPPALIDQLKPGGRMVIPVGNVFQD 206
Query: 181 LKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLR 213
LKVVDK+ DGS+SI ETSVRYVPLTSR+AQLR
Sbjct: 207 LKVVDKDSDGSVSIHDETSVRYVPLTSREAQLR 239
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 215 | ||||||
| TAIR|locus:504955645 | 230 | PIMT1 "protein-l-isoaspartate | 0.995 | 0.930 | 0.775 | 2.8e-89 | |
| TAIR|locus:2157767 | 309 | PIMT2 "protein-l-isoaspartate | 1.0 | 0.695 | 0.744 | 8e-85 | |
| UNIPROTKB|P80895 | 227 | PCMT1 "Protein-L-isoaspartate( | 0.986 | 0.933 | 0.529 | 1.5e-53 | |
| UNIPROTKB|E1BXJ0 | 228 | LOC423008 "Protein-L-isoaspart | 0.967 | 0.912 | 0.530 | 3e-53 | |
| UNIPROTKB|Q5F3N1 | 228 | PCMT1 "Protein-L-isoaspartate( | 0.967 | 0.912 | 0.535 | 3.8e-53 | |
| UNIPROTKB|P15246 | 227 | PCMT1 "Protein-L-isoaspartate( | 0.986 | 0.933 | 0.525 | 4.9e-53 | |
| MGI|MGI:97502 | 227 | Pcmt1 "protein-L-isoaspartate | 0.986 | 0.933 | 0.525 | 8e-53 | |
| UNIPROTKB|J9JIK8 | 208 | PCMT1 "Protein-L-isoaspartate | 0.948 | 0.980 | 0.545 | 1e-52 | |
| RGD|3268 | 227 | Pcmt1 "protein-L-isoaspartate | 0.986 | 0.933 | 0.525 | 1e-52 | |
| UNIPROTKB|P22062 | 227 | Pcmt1 "Protein-L-isoaspartate( | 0.986 | 0.933 | 0.525 | 1e-52 |
| TAIR|locus:504955645 PIMT1 "protein-l-isoaspartate methyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 166/214 (77%), Positives = 193/214 (90%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
MVE+LQ++G++TS +V++ ME +DR FV D + YVDSPM+IGYN TISAPHMHA CLQ
Sbjct: 16 MVENLQNHGIVTSDEVAKAMEAVDRGVFVTDRSSAYVDSPMSIGYNVTISAPHMHAMCLQ 75
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LLE++LKPGM LD+GSGTGYLTACFA+MVG +GRA+GVEHIPELV SS++NIE SAA+P
Sbjct: 76 LLEKHLKPGMRVLDVGSGTGYLTACFAVMVGTEGRAIGVEHIPELVASSVKNIEASAASP 135
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 180
LKEGSL+VHVGDGR+GW EFAPYDAIHVGAAAPEIP+ALIDQLKPGGR+VIPVGNIFQD
Sbjct: 136 FLKEGSLAVHVGDGRQGWAEFAPYDAIHVGAAAPEIPEALIDQLKPGGRLVIPVGNIFQD 195
Query: 181 LKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRG 214
L+VVDKN DGS+SI ETSVRYVPLTSR+AQLRG
Sbjct: 196 LQVVDKNSDGSVSIKDETSVRYVPLTSREAQLRG 229
|
|
| TAIR|locus:2157767 PIMT2 "protein-l-isoaspartate methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
Identities = 160/215 (74%), Positives = 186/215 (86%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
MVE+L+ YGVI+SK+V++VME +DR FVP G+ YVD+P+ IGYNATISAPHMHATCLQ
Sbjct: 95 MVENLKRYGVISSKRVAQVMEALDRGLFVPVGSSAYVDTPVPIGYNATISAPHMHATCLQ 154
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LLE+ L PGM ALD+GSGTGYLT CFALMVG +GR VGV+HIPELV SI+NIEKS AA
Sbjct: 155 LLEDKLHPGMRALDVGSGTGYLTGCFALMVGAEGRVVGVDHIPELVDMSIKNIEKSVAAS 214
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQD 180
LK+GSLS+HVGDGRKGW EFAPYDAIHVGAAA EIPQ L+DQLKPGGRMVIP+G FQ+
Sbjct: 215 FLKKGSLSLHVGDGRKGWQEFAPYDAIHVGAAASEIPQPLLDQLKPGGRMVIPLGTYFQE 274
Query: 181 LKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
LKV+DKN+DGS+ + +ETSVRYVPLTSR QL G+
Sbjct: 275 LKVIDKNEDGSIKVHTETSVRYVPLTSRVEQLGGF 309
|
|
| UNIPROTKB|P80895 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 115/217 (52%), Positives = 147/217 (67%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ ATISAPHMHA L+
Sbjct: 13 LIHNLRKNGIIKTDKVFEVMLATDRSHYAKCN--PYMDSPQSIGFQATISAPHMHAYALE 70
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL + L G ALD+GSG+G LTACFA MVGP G+ +G++HI ELV SI N+ K
Sbjct: 71 LLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPM- 129
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF-- 178
LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG
Sbjct: 130 LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 189
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 190 QMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
|
| UNIPROTKB|E1BXJ0 LOC423008 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 113/213 (53%), Positives = 148/213 (69%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
+V +L G+I S++V +V+ DR ++ PY+DSP +IGY ATISAPHMHA L+
Sbjct: 13 LVNNLYKKGIIKSQRVFDVLLATDRGHYIKYF--PYMDSPQSIGYKATISAPHMHAHALE 70
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL++ L G ALD+GSG+GYLTACFA MVGP G+AVGVEHI ELV SI+N+++
Sbjct: 71 LLKDQLVEGAKALDVGSGSGYLTACFARMVGPTGKAVGVEHIKELVNESIRNVKEDDPT- 129
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--NIF 178
LL G + + VGDGR+G+PE APYDAIHVGAAAP +PQ L+++LKPGGR+++PVG
Sbjct: 130 LLSSGRVKLVVGDGRQGYPEEAPYDAIHVGAAAPTVPQELLNELKPGGRLILPVGPEGAN 189
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQ 211
Q L DK DG + V YVPLT ++ Q
Sbjct: 190 QVLMQYDKTSDGQIIETQLMGVIYVPLTDKEKQ 222
|
|
| UNIPROTKB|Q5F3N1 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 114/213 (53%), Positives = 147/213 (69%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ +L+ G+I S KV EVM DR + PY+DSP +IG+ ATISAPHMHA L+
Sbjct: 13 LIHNLRKNGIIKSDKVFEVMLATDRCHYAKYN--PYMDSPQSIGFQATISAPHMHAYALE 70
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL + L G ALD+GSG+G LTACF+ MVGP+G+ VG++HI ELV SI N++K
Sbjct: 71 LLSDQLHEGAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVKKDDPT- 129
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF-- 178
LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG
Sbjct: 130 LLSSGRVKLIVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 189
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQ 211
Q L+ DK +DGS+ + V YVPLT ++ Q
Sbjct: 190 QMLEQYDKLEDGSVKMKPLMGVIYVPLTDKEKQ 222
|
|
| UNIPROTKB|P15246 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 114/217 (52%), Positives = 146/217 (67%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ ATISAPHMHA L+
Sbjct: 13 LIHNLRKNGIIKTDKVFEVMLATDRSHYAKCN--PYMDSPQSIGFQATISAPHMHAYALE 70
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL + L G ALD+GSG+G LTACFA MVGP G+ +G++HI ELV SI N+ K
Sbjct: 71 LLFDQLNEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPM- 129
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF-- 178
LL G + + VGDGR G+ APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG
Sbjct: 130 LLSSGRVQLVVGDGRMGYAAEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 189
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 190 QMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
|
| MGI|MGI:97502 Pcmt1 "protein-L-isoaspartate (D-aspartate) O-methyltransferase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 114/217 (52%), Positives = 147/217 (67%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ ATISAPHMHA L+
Sbjct: 13 LIHNLRKNGIIKTDKVFEVMLATDRSHYAKSN--PYMDSPQSIGFQATISAPHMHAYALE 70
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV SI N++K
Sbjct: 71 LLFDQLHEGAKALDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDDSITNVKKDDPM- 129
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF-- 178
LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG
Sbjct: 130 LLSSGRVRLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 189
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 190 QMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
|
| UNIPROTKB|J9JIK8 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 114/209 (54%), Positives = 142/209 (67%)
Query: 9 GVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKP 68
G+I + KV EVM DR+ + PY+DSP +IG+ ATISAPHMHA L+LL + L
Sbjct: 2 GIIKTDKVFEVMLATDRSHYAKCN--PYMDSPQSIGFQATISAPHMHAYALELLFDQLHE 59
Query: 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 128
G ALD+GSG+G LTACFA MVGP G+ +G++HI ELV SI N+ K LL G +
Sbjct: 60 GAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDPM-LLSSGRVQ 118
Query: 129 VHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF--QDLKVVDK 186
+ VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG Q L+ DK
Sbjct: 119 LVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDK 178
Query: 187 NQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
QDGS+ + V YVPLT ++ Q W
Sbjct: 179 LQDGSVKMKPLMGVIYVPLTDKEKQWSRW 207
|
|
| RGD|3268 Pcmt1 "protein-L-isoaspartate (D-aspartate) O-methyltransferase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 114/217 (52%), Positives = 147/217 (67%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ ATISAPHMHA L+
Sbjct: 13 LIHNLRKNGIIKTDKVFEVMLATDRSHYAKSN--PYMDSPQSIGFQATISAPHMHAYALE 70
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV SI N++K
Sbjct: 71 LLFDQLHEGAKALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDDSITNVKKDDPM- 129
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF-- 178
LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG
Sbjct: 130 LLSSGRVRLVVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 189
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 190 QMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
|
| UNIPROTKB|P22062 Pcmt1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 114/217 (52%), Positives = 147/217 (67%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ ATISAPHMHA L+
Sbjct: 13 LIHNLRKNGIIKTDKVFEVMLATDRSHYAKSN--PYMDSPQSIGFQATISAPHMHAYALE 70
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV SI N++K
Sbjct: 71 LLFDQLHEGAKALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDDSITNVKKDDPM- 129
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF-- 178
LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG
Sbjct: 130 LLSSGRVRLVVGDGRMGFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 189
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 190 QMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B1YC47 | PIMT_PYRNV | 2, ., 1, ., 1, ., 7, 7 | 0.4182 | 0.9162 | 0.9516 | yes | no |
| A8AAV7 | PIMT_IGNH4 | 2, ., 1, ., 1, ., 7, 7 | 0.3896 | 0.9302 | 0.9478 | yes | no |
| Q5RA89 | PIMT_PONAB | 2, ., 1, ., 1, ., 7, 7 | 0.5253 | 0.9860 | 0.9339 | yes | no |
| A7HL14 | PIMT_FERNB | 2, ., 1, ., 1, ., 7, 7 | 0.4326 | 0.9023 | 0.9748 | yes | no |
| A4WNC5 | PIMT_PYRAR | 2, ., 1, ., 1, ., 7, 7 | 0.3875 | 0.9116 | 0.9560 | yes | no |
| B6YX51 | PIMT_THEON | 2, ., 1, ., 1, ., 7, 7 | 0.4174 | 0.9348 | 0.9136 | yes | no |
| Q8ZYN0 | PIMT_PYRAE | 2, ., 1, ., 1, ., 7, 7 | 0.3962 | 0.8976 | 0.9414 | yes | no |
| Q57636 | PIMT_METJA | 2, ., 1, ., 1, ., 7, 7 | 0.3962 | 0.9348 | 0.9348 | yes | no |
| Q9UXX0 | PIMT_PYRAB | 2, ., 1, ., 1, ., 7, 7 | 0.3952 | 0.8930 | 0.8888 | yes | no |
| O27962 | PIMT2_ARCFU | 2, ., 1, ., 1, ., 7, 7 | 0.4512 | 0.8604 | 0.8447 | yes | no |
| A3MY16 | PIMT_PYRCJ | 2, ., 1, ., 1, ., 7, 7 | 0.4075 | 0.9023 | 0.9371 | yes | no |
| Q27873 | PIMT_CAEEL | 2, ., 1, ., 1, ., 7, 7 | 0.4694 | 0.9627 | 0.92 | yes | no |
| Q42539 | PIMT_ARATH | 2, ., 1, ., 1, ., 7, 7 | 0.7757 | 0.9953 | 0.9304 | yes | no |
| Q8TYL4 | PIMT_METKA | 2, ., 1, ., 1, ., 7, 7 | 0.4423 | 0.9209 | 0.8761 | yes | no |
| Q74CZ5 | PIMT_GEOSL | 2, ., 1, ., 1, ., 7, 7 | 0.3880 | 0.8697 | 0.9033 | yes | no |
| A1RSC6 | PIMT_PYRIL | 2, ., 1, ., 1, ., 7, 7 | 0.3849 | 0.9302 | 0.9661 | yes | no |
| Q43209 | PIMT_WHEAT | 2, ., 1, ., 1, ., 7, 7 | 0.7323 | 0.9906 | 0.9260 | N/A | no |
| O59534 | PIMT_PYRHO | 2, ., 1, ., 1, ., 7, 7 | 0.4272 | 0.9209 | 0.9 | yes | no |
| A6UWM1 | PIMT_META3 | 2, ., 1, ., 1, ., 7, 7 | 0.3881 | 0.9302 | 0.9259 | yes | no |
| Q8TT94 | PIMT2_METAC | 2, ., 1, ., 1, ., 7, 7 | 0.3904 | 0.9209 | 0.8319 | yes | no |
| Q0W2W0 | PIMT_UNCMA | 2, ., 1, ., 1, ., 7, 7 | 0.4188 | 0.8372 | 0.9574 | yes | no |
| P15246 | PIMT_BOVIN | 2, ., 1, ., 1, ., 7, 7 | 0.5253 | 0.9860 | 0.9339 | yes | no |
| Q9URZ1 | PIMT_SCHPO | 2, ., 1, ., 1, ., 7, 7 | 0.4739 | 0.9488 | 0.8869 | yes | no |
| Q92047 | PIMT_DANRE | 2, ., 1, ., 1, ., 7, 7 | 0.5258 | 0.9674 | 0.9122 | yes | no |
| Q123X2 | PIMT2_POLSJ | 2, ., 1, ., 1, ., 7, 7 | 0.415 | 0.8511 | 0.8672 | yes | no |
| Q6M116 | PIMT_METMP | 2, ., 1, ., 1, ., 7, 7 | 0.3584 | 0.9348 | 0.9481 | yes | no |
| C6A3F2 | PIMT_THESM | 2, ., 1, ., 1, ., 7, 7 | 0.3820 | 0.9023 | 0.8778 | yes | no |
| A6LNM3 | PIMT_THEM4 | 2, ., 1, ., 1, ., 7, 7 | 0.3636 | 0.9069 | 0.9848 | yes | no |
| B3E6I4 | PIMT_GEOLS | 2, ., 1, ., 1, ., 7, 7 | 0.375 | 0.8837 | 0.8755 | yes | no |
| Q4R5H0 | PIMT_MACFA | 2, ., 1, ., 1, ., 7, 7 | 0.5253 | 0.9860 | 0.9339 | N/A | no |
| P80895 | PIMT_PIG | 2, ., 1, ., 1, ., 7, 7 | 0.5299 | 0.9860 | 0.9339 | yes | no |
| A6VI91 | PIMT_METM7 | 2, ., 1, ., 1, ., 7, 7 | 0.3737 | 0.8883 | 0.9009 | yes | no |
| P22062 | PIMT_RAT | 2, ., 1, ., 1, ., 7, 7 | 0.5253 | 0.9860 | 0.9339 | yes | no |
| Q12UV0 | PIMT_METBU | 2, ., 1, ., 1, ., 7, 7 | 0.3952 | 0.9209 | 0.9753 | yes | no |
| Q8PW90 | PIMT_METMA | 2, ., 1, ., 1, ., 7, 7 | 0.3720 | 0.9441 | 0.8353 | yes | no |
| Q3JAW6 | PIMT2_NITOC | 2, ., 1, ., 1, ., 7, 7 | 0.3819 | 0.8604 | 0.8447 | yes | no |
| A0B9U1 | PIMT_METTP | 2, ., 1, ., 1, ., 7, 7 | 0.4380 | 0.9069 | 0.9285 | yes | no |
| Q27869 | PIMT_DROME | 2, ., 1, ., 1, ., 7, 7 | 0.4553 | 0.9441 | 0.8982 | yes | no |
| O26915 | PIMT_METTH | 2, ., 1, ., 1, ., 7, 7 | 0.3652 | 0.9441 | 0.9354 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.983 |
| 4th Layer | 2.1.1.77 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 215 | |||
| pfam01135 | 210 | pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat | 1e-106 | |
| TIGR00080 | 215 | TIGR00080, pimt, protein-L-isoaspartate(D-aspartat | 3e-69 | |
| COG2518 | 209 | COG2518, Pcm, Protein-L-isoaspartate carboxylmethy | 2e-62 | |
| PRK13942 | 212 | PRK13942, PRK13942, protein-L-isoaspartate O-methy | 6e-58 | |
| PRK00312 | 212 | PRK00312, pcm, protein-L-isoaspartate O-methyltran | 1e-53 | |
| PRK13944 | 205 | PRK13944, PRK13944, protein-L-isoaspartate O-methy | 2e-43 | |
| TIGR04364 | 394 | TIGR04364, methyltran_FxLD, methyltransferase, FxL | 4e-29 | |
| PRK13943 | 322 | PRK13943, PRK13943, protein-L-isoaspartate O-methy | 7e-22 | |
| TIGR04188 | 363 | TIGR04188, methyltr_grsp, methyltransferase, ATP-g | 3e-14 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 1e-13 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 1e-12 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 2e-08 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 4e-08 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 4e-08 | |
| COG4122 | 219 | COG4122, COG4122, Predicted O-methyltransferase [G | 2e-07 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 3e-07 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 5e-07 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 7e-07 | |
| PRK00377 | 198 | PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr | 9e-07 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 2e-06 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 8e-06 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 3e-05 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 7e-05 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 2e-04 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 6e-04 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 8e-04 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 0.002 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 0.003 | |
| PRK07402 | 196 | PRK07402, PRK07402, precorrin-6B methylase; Provis | 0.004 |
| >gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Score = 303 bits (779), Expect = e-106
Identities = 126/213 (59%), Positives = 152/213 (71%), Gaps = 11/213 (5%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTP--PYVDSPMAIGYNATISAPHMHATC 58
++E+L++YGVI S KV+E M +DR FVP+ Y D P++IGY TISAPHMHA
Sbjct: 6 LIENLKNYGVIASDKVAEAMLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPHMHAMM 65
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
L+LLE LKPGM L+IGSG+GYLTACFA MVG G V +EHIPELV + +N+EK
Sbjct: 66 LELLE--LKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRNLEKLGL 123
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG-NI 177
++ V VGDGR+GWPEFAPYDAIHVGAAAPEIP+ALIDQLK GGR+VIPVG N
Sbjct: 124 E------NVIVVVGDGRQGWPEFAPYDAIHVGAAAPEIPEALIDQLKEGGRLVIPVGPNG 177
Query: 178 FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 210
Q L+ DK DGS+ I VR+VPLT R+
Sbjct: 178 NQVLQQFDKRNDGSVVIKDLEGVRFVPLTDREG 210
|
Length = 210 |
| >gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 3e-69
Identities = 93/213 (43%), Positives = 127/213 (59%), Gaps = 11/213 (5%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTP--PYVDSPMAIGYNATISAPHMHATC 58
+++ L + G I SK+V + + ++ R FVP+ YVD+P+ IGY TISAPHM A
Sbjct: 10 LIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMM 69
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
+LLE LKPGM L+IG+G+GY A A +VG G V +E IPEL + + + K
Sbjct: 70 TELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK--- 124
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF 178
L ++ V VGDG +GW APYD I+V AA P+IP+ALIDQLK GG +V+PVG
Sbjct: 125 ---LGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPEALIDQLKEGGILVMPVGEYL 181
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQ 211
Q LK +K + G + I V +VPL +
Sbjct: 182 QVLKRAEK-RGGEIIIKDVEPVAFVPLVGGEGF 213
|
This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215 |
| >gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 2e-62
Identities = 98/213 (46%), Positives = 126/213 (59%), Gaps = 15/213 (7%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATC 58
+VE L+ G IT ++V + + R FVP Y D + IG TISAPHM A
Sbjct: 6 LVERLRTEG-ITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARM 64
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
LQLLE LKPG L+IG+G+GY A A +VG R V +E I EL + +N+E
Sbjct: 65 LQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLET--- 116
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF 178
L +++V GDG KGWPE APYD I V AAAPE+P+AL+DQLKPGGR+VIPVG+
Sbjct: 117 ---LGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVGSGP 173
Query: 179 -QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 210
Q L + K+ DG+ +VR+VPL D
Sbjct: 174 AQRLLRITKDGDGNFERRDLFNVRFVPLVGGDG 206
|
Length = 209 |
| >gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 6e-58
Identities = 91/206 (44%), Positives = 124/206 (60%), Gaps = 11/206 (5%)
Query: 2 VEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCL 59
+E L G I SKKV + + + R FVP+ YVD+P+ IGY TISA HM A
Sbjct: 10 IEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMC 69
Query: 60 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 119
+LL+ LK GM L+IG+G+GY A A +VG G+ V +E IPEL + + ++K
Sbjct: 70 ELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK---- 123
Query: 120 PLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQ 179
L ++ V VGDG G+ E APYD I+V AA P+IP+ LI+QLK GG MVIPVG+ Q
Sbjct: 124 --LGYDNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVGSYSQ 181
Query: 180 DLKVVDKNQDGSLSIWSETSVRYVPL 205
+L V+K+ +G + V +VPL
Sbjct: 182 ELIRVEKD-NGKIIKKKLGEVAFVPL 206
|
Length = 212 |
| >gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 1e-53
Identities = 82/212 (38%), Positives = 113/212 (53%), Gaps = 14/212 (6%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTP--PYVDSPMAIGYNATISAPHMHATC 58
+V L+ G I ++V E +E R FVP+ Y + + IG TIS P+M A
Sbjct: 12 LVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARM 70
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
+LLE LKPG L+IG+G+GY A A +V R VE I L + + +++
Sbjct: 71 TELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQ--- 122
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF 178
L ++SV GDG KGWP +AP+D I V AAAPEIP+AL++QLK GG +V PVG
Sbjct: 123 ---LGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPRALLEQLKEGGILVAPVGGEE 179
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 210
Q L + + G VR+VPL +
Sbjct: 180 QQLLTRVRKRGGRFEREVLEEVRFVPLVKGEL 211
|
Length = 212 |
| >gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 2e-43
Identities = 82/208 (39%), Positives = 118/208 (56%), Gaps = 11/208 (5%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTP--PYVDSPMAIGYNATISAPHMHATC 58
+VE L G+I S++V + M ++ R FV Y D P+ + ATISAPHM A
Sbjct: 5 LVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMM 64
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
+L+E +PGM L++G+G+GY A A + +G+ VE + EL + + QNIE+
Sbjct: 65 CELIEP--RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER--- 119
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG-NI 177
L G + V+ GDG++G + AP+DAI V AAA IP AL+ QLK GG +VIPV +
Sbjct: 120 --LGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPVEEGV 177
Query: 178 FQDLKVVDKNQDGSLSIWSETSVRYVPL 205
Q L V K + + + T V +VPL
Sbjct: 178 GQVLYKVVKRGEK-VEKRAITYVLFVPL 204
|
Length = 205 |
| >gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-29
Identities = 66/192 (34%), Positives = 89/192 (46%), Gaps = 36/192 (18%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNA------------- 47
+V+ L+ GVI S +V T+ R F P +P+ Y A
Sbjct: 8 LVDELREDGVIRSPRVEAAFRTVPRHLFAPG-------APLEKAYAANRAVVTKRDEDGA 60
Query: 48 ---TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE 104
++SAPH+ A L+ ++PGM L+IGSG GY A A +VGP G V+ +
Sbjct: 61 ALSSVSAPHIQAMMLEQAG--VEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDED 117
Query: 105 LVVSSIQNIEKSAAAPLLKEGSLSVHV--GDGRKGWPEFAPYDAIHVGAAAPEIPQALID 162
+ A A L G V V D G PE APYD I V A +IP A +D
Sbjct: 118 VT--------DRARACLAAAGYPQVTVVLADAEAGVPELAPYDRIIVTVGAWDIPPAWLD 169
Query: 163 QLKPGGRMVIPV 174
QL PGGR+V+P+
Sbjct: 170 QLAPGGRLVVPL 181
|
Members of this family resemble occur regularly in the vicinity of lantibiotic biosynthesis enzymes and their probable target, the FxLD family of putative ribosomal natural product precursor (TIGR04363). Members resemble protein-L-isoaspartate O-methyltransferase (TIGR00080) and a predicted methyltranserase, TIGR04188, of another putative peptide modification system. Length = 394 |
| >gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 7e-22
Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 13/140 (9%)
Query: 47 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 106
+T S P + A ++ + L GM L+IG GTGY A + +VG +G V VE+ ++
Sbjct: 61 STSSQPSLMALFMEWV--GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC 118
Query: 107 VSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 166
+ +N+ + L ++ GDG G PEFAPYD I V E+P+ QLK
Sbjct: 119 EIAKRNVRR------LGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKE 172
Query: 167 GGRMVIPVGNIFQDLKVVDK 186
GGR+++P+ +LK+ +
Sbjct: 173 GGRVIVPI-----NLKLSRR 187
|
Length = 322 |
| >gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide maturase system | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 3e-14
Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 31 DGTPPYVDSPMAIGYNATISA--PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFAL 88
DG + + T S+ P + A L+ L+ ++ G L+IG+GTGY A
Sbjct: 70 DGDLAADAAGGPVTGRPTSSSTQPSLVARMLEALD--VEDGHRVLEIGTGTGYSAALLCH 127
Query: 89 MVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148
+G VE P L + + + AP +V GDG G P APYD I
Sbjct: 128 RLG-DDNVTSVEVDPGLAARAASALAAAGYAP-------TVVTGDGLLGHPPRAPYDRII 179
Query: 149 VGAAAPEIPQALIDQLKPGGRMVIPVG 175
A +P A + Q +PGG ++ +
Sbjct: 180 ATCAVRRVPPAWLRQTRPGGVILTTLS 206
|
Members of this protein family are predicted SAM-dependent methyltransferases that regularly occur in the context of a putative peptide modification ATP-grasp enzyme (TIGR04187, related to enzymes of microviridin maturation) and a putative ribosomal peptide modification target (TIGR04186). Length = 363 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 1e-13
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 49 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 108
++ + A L L +PG DIG+GTG +T + GP GR + +E E +
Sbjct: 17 MTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSIT-IEWALAGPSGRVIAIERDEEALEL 73
Query: 109 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVG--AAAPEIPQALIDQLKP 166
+N + +L V GD + P+ DAI +G EI +A ++LKP
Sbjct: 74 IERNAAR------FGVDNLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKP 127
Query: 167 GGRMVI 172
GGR+V
Sbjct: 128 GGRLVA 133
|
Length = 187 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-12
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127
PG LDIG GTG L A + P R GV+ PE ++ ++A L +
Sbjct: 1 PGARVLDIGCGTGSLAIELARLF-PGARVTGVDLSPE----MLELARENAKLALGPR--I 53
Query: 128 SVHVGDGRKGWPEFAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVI 172
+ GD +DA+ +G ++ AL LKPGGR+V+
Sbjct: 54 TFVQGDAPDALDLLEGFDAVFIGGGGGDLLELLDALASLLKPGGRLVL 101
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124
+ PG L+ G+G+G LTA A VGP+G E + ++ +N+ +
Sbjct: 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE-----FGLG 145
Query: 125 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQDLKV 183
+++ +GD R+G E DA+ + P + + + D LKPGG +V+ + Q K
Sbjct: 146 DRVTLKLGDVREGIDE-EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKT 204
Query: 184 VDK 186
V+
Sbjct: 205 VEA 207
|
Length = 256 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-08
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 49 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 108
++ + A L L L+PG DIG+GTG +T A +V GR +E PE
Sbjct: 2 MTKREVRALTLSKLR--LRPGDVLWDIGAGTGSVTIEAARLVPN-GRVYAIERNPE---- 54
Query: 109 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP-YDAIHVGAAA---PEIPQALIDQL 164
++ IE++ ++ + GD + + P DA+ VG + EI +A+ +L
Sbjct: 55 ALDLIERNLRR--FGVSNIVIVEGDAPEAPEDLLPDPDAVFVGGSGGLLQEILEAVERRL 112
Query: 165 KPGGRMVIPV 174
+PGGR+V+
Sbjct: 113 RPGGRIVLNA 122
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-08
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 125
LK G+ LD+G GTGYLT A +GP VG++ E + + +N +K L
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKK------LGYE 54
Query: 126 SLSVHVGD----GRKGWPEFAPYD------AIHVGAAAPEIPQALIDQLKPGGRMVI 172
++ GD + + +D ++ ++ + +I LKPGG +++
Sbjct: 55 NVEFIQGDIEELPQLQLED-NSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIV 110
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 12/140 (8%)
Query: 52 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111
L+LL P L+IG+ GY AL + GR +E E + +
Sbjct: 44 DPETGALLRLLARLSGPK-RILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARE 102
Query: 112 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA--PYDAIHVGAAAPEIPQAL---IDQLKP 166
N+ ++ ++ + GD +D + + A + P+ L + L+P
Sbjct: 103 NLAEAGVDDRIEL----LLGGDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRP 158
Query: 167 GGRMVIPVGNIFQDLKVVDK 186
GG +I N+ +V D
Sbjct: 159 GG--LIVADNVLFGGRVADP 176
|
Length = 219 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 3e-07
Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 22/133 (16%)
Query: 60 QLLEENL--KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 117
+LL +L G LD+G G G L A A P V+ I + S + +
Sbjct: 21 RLLLSHLPKPLGGKVLDLGCGYGVLGAALAKR-SPDLEVTMVD-INARALESAR---ANL 75
Query: 118 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAI------HVG-AAAPEIPQALIDQ----LKP 166
AA L+ G V D +D I H G A ++ Q I LKP
Sbjct: 76 AANGLENG--EVFWSDLYSAVEP-GKFDLIISNPPFHAGKATDYDVAQRFIAGAARHLKP 132
Query: 167 GGRMVIPVGNIFQ 179
GG + I V N
Sbjct: 133 GGELWI-VANRHL 144
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-07
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 21/118 (17%)
Query: 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124
++PG LD+G G G A VGP+GR VG++ ++ + K AA L
Sbjct: 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML-----ALAKERAAGLG-- 68
Query: 125 GSLSVHVGDGRKGWPEFAPYDAI-------HVGAAAPEIPQALIDQ---LKPGGRMVI 172
++ GD +DA+ H+ + +AL + L+PGGR+V+
Sbjct: 69 PNVEFVRGDADGLPFPDGSFDAVRSDRVLQHL----EDPARALAEIARVLRPGGRVVV 122
|
Length = 241 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-07
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 16/110 (14%)
Query: 73 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132
LD+G GTG L AL GP R GV+ P ++ K+AAA L ++ V G
Sbjct: 3 LDLGCGTGALAL--ALASGPGARVTGVDISPVA----LELARKAAAA--LLADNVEVLKG 54
Query: 133 DGRKGWP-EFAPYDAI---HVGAAAPEIPQALIDQ----LKPGGRMVIPV 174
D + P +D I E +++ LKPGG +V+ +
Sbjct: 55 DAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTL 104
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 9e-07
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
L L + L+ G LDIG GTG +T +L+VG G+ V+ + + + +N EK
Sbjct: 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV 90
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAP-YDAIHVGAAA---PEIPQALIDQLKPGGRMVIPV 174
++ + G+ + +D I +G + EI A + +K GGR+VI
Sbjct: 91 L-----NNIVLIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDA 145
|
Length = 198 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-06
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 21/119 (17%)
Query: 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 128
G LD G+G+G A GP R VGVE PE + + + + AP +
Sbjct: 1 GDRVLDPGAGSGAFLL-AAARAGPDARVVGVELDPEAAALARRRLALAGLAPR-----VR 54
Query: 129 VHVGDGRK-GWPEFAPYDAI------HVGAAAPEIPQALIDQ--------LKPGGRMVI 172
V VGD R+ +D + A P+ + L D+ LKPGG +V+
Sbjct: 55 VVVGDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 8e-06
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 55 HAT---CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVV-SSI 110
H T CL+ LE+ + PG LD+G G+G L A A +G + + V+ I V ++
Sbjct: 103 HPTTRLCLEALEKLVLPGKTVLDVGCGSGIL-AIAAAKLGA-KKVLAVD-IDPQAVEAAR 159
Query: 111 QNIE 114
+N E
Sbjct: 160 ENAE 163
|
Length = 250 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 24/126 (19%)
Query: 55 HAT---CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111
H T CL+ LE+ LK G LD+G G+G L A A +G + VGV+ P+ V ++ +
Sbjct: 146 HPTTSLCLEALEKLLKKGKTVLDVGCGSGIL-AIAAAKLGA-KKVVGVDIDPQAVEAARE 203
Query: 112 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI--------HVGAAAPEIPQALIDQ 163
N + L++ + PE P+D I V AP+I
Sbjct: 204 NARLNGVELLVQAK-----GFLLLEV-PENGPFDVIVANILAEVLV-ELAPDI----KRL 252
Query: 164 LKPGGR 169
LKPGGR
Sbjct: 253 LKPGGR 258
|
Length = 300 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-05
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 21/126 (16%)
Query: 55 HAT---CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111
H T CL+ LE +KPG LD+G G+G L A AL +G + + VGV+ P V ++ +
Sbjct: 144 HPTTALCLEALESLVKPGETVLDVGCGSGIL-AIAALKLGAK-KVVGVDIDPVAVRAAKE 201
Query: 112 NIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ----LKP 166
N E + L+ V++ GD +G D + V + L +KP
Sbjct: 202 NAELNGVEAQLE-----VYLPGDLPEG-----KADVV-VANILADPLIELAPDIYALVKP 250
Query: 167 GGRMVI 172
GG +++
Sbjct: 251 GGYLIL 256
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 2e-04
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGV 99
++PG LD+ GTG L A VG G VG+
Sbjct: 48 GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGL 82
|
Length = 239 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 6e-04
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 61 LLEENL--KPGMHALDIGSGTGYLTACFALM 89
LL EN K G L++G+G+G + A
Sbjct: 14 LLAENAVDKKGDRVLEVGTGSGIVAIVAAKN 44
|
Length = 188 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 8e-04
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 26/121 (21%)
Query: 65 NLKPGMHALDIGSGTGYLTACF--ALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL 122
LKPG LD+GSG G+ CF A VGP G+ +GV+ PE++ + N K+ +
Sbjct: 74 ELKPGETVLDLGSGGGF--DCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNV- 130
Query: 123 KEGSLSVHVGDGRKGWPEFAP-----YDAI---HVGAAAPEIPQALIDQ---LKPGGRMV 171
+ R G E P D I V +P+ + + LKPGGR
Sbjct: 131 ----------EFRLGEIEALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFA 180
Query: 172 I 172
I
Sbjct: 181 I 181
|
Length = 272 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 43/130 (33%), Positives = 55/130 (42%), Gaps = 32/130 (24%)
Query: 59 LQLLEE--NLKPGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEK 115
L L+ E LKPGM LDIG G G L G VGV L + EK
Sbjct: 61 LDLILEKLGLKPGMTLLDIGCGWGGLA---IYAAEEYGVTVVGV----TLSEEQLAYAEK 113
Query: 116 SAAAPLLKEGSLSVHVGDGR-KGWPEFA-PYDAI-------HVGAAAPEIPQALIDQ--- 163
AA L++ +V V R + + +F P+D I HVG E +
Sbjct: 114 RIAARGLED---NVEV---RLQDYRDFEEPFDRIVSVGMFEHVG---KENYDDFFKKVYA 164
Query: 164 -LKPGGRMVI 172
LKPGGRM++
Sbjct: 165 LLKPGGRMLL 174
|
Length = 283 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 37.6 bits (84), Expect = 0.003
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 15/119 (12%)
Query: 62 LEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL 121
L L G+ LDIG GTG L A + G VGV+ PE++ + E +
Sbjct: 42 LLRLLPGGLGVLDIGCGTGRLAL-LARLGGRGAYVVGVDLSPEMLALARARAEGA----- 95
Query: 122 LKEGSLSVHVGDGRKGWPEFAP---YDAI-----HVGAAAPEIPQALIDQLKPGGRMVI 172
G + V D G F +D + + + L+ LKPGGR+V+
Sbjct: 96 -GLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVL 153
|
Length = 257 |
| >gnl|CDD|180961 PRK07402, PRK07402, precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.004
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 26/115 (22%)
Query: 74 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELV-----------VSSIQNIEKSAAAPLL 122
DIG+GTG + L+ P+GR + +E E+V V +++ IE SA L
Sbjct: 46 DIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLA 104
Query: 123 KEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI 177
+ V I G EI QA+ LKPGGR+V ++
Sbjct: 105 QLAPAPDRV--------------CIEGGRPIKEILQAVWQYLKPGGRLVATASSL 145
|
Length = 196 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 215 | |||
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 100.0 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 100.0 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 100.0 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 100.0 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 100.0 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 100.0 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.97 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.94 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.77 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.77 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.76 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.76 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.73 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.69 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.69 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.68 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.68 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.68 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.68 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.68 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.68 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.67 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.67 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.66 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.65 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.65 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.65 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.65 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.64 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.64 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.63 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.63 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.62 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.62 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.62 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.61 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.61 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.61 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.61 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.61 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.6 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.6 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.6 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.59 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.59 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.59 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.58 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.58 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.58 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.57 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.57 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.57 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.56 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.56 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.56 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.56 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.55 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.55 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.55 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.55 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.55 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.55 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.54 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.54 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.54 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.53 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.53 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.53 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.53 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.53 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.53 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.53 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.51 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.51 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.51 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.51 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.51 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.51 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.5 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.5 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.5 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.49 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.49 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.49 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.49 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.49 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.48 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.48 | |
| PLN02476 | 278 | O-methyltransferase | 99.48 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.48 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.48 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.48 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.48 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.48 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.47 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.47 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.47 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.47 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.46 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.46 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.45 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.44 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.44 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.44 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.43 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.43 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.43 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.41 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.4 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.4 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.4 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.39 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.39 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.39 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.39 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.38 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.38 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.38 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.37 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.37 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.36 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.35 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.32 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.32 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 99.32 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.32 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.32 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.31 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.31 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.3 | |
| PLN02366 | 308 | spermidine synthase | 99.3 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.29 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.29 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.28 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.28 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.28 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.27 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.27 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.26 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.26 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.26 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.26 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.25 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.24 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.24 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.22 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.2 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.2 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.19 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.19 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.18 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.17 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.17 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.16 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.16 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.15 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.15 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.14 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.13 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.13 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.13 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 99.13 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.11 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.1 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.1 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 99.1 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.09 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 99.07 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.07 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.07 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.06 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.06 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 99.05 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.03 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 99.03 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.03 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.02 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.01 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.01 | |
| PLN02823 | 336 | spermine synthase | 99.0 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.99 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.99 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.95 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.94 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.91 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.89 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.88 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.87 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.87 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.86 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.85 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.85 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.85 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.83 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.82 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.81 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.79 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.78 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.77 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.76 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.76 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.75 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.74 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.74 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.74 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 98.72 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.68 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.68 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.68 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.66 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.64 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.62 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.56 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.55 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.55 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.53 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.53 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 98.51 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.51 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.47 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.42 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.41 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.41 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.38 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.36 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.35 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.35 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.34 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.28 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.17 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.16 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.16 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 98.15 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.12 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.11 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 98.09 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.07 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 98.04 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.04 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 98.0 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.0 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.99 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.98 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.98 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 97.97 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.97 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.94 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.94 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.89 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.86 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.85 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.85 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.85 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.84 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.79 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.78 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.77 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.76 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.73 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.7 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.64 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.63 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.62 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 97.58 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.58 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.56 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.51 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.5 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 97.43 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.39 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.39 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 97.34 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.33 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 97.32 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 97.29 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 97.27 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 97.21 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 97.15 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.09 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 97.09 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.06 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 96.98 | |
| PHA01634 | 156 | hypothetical protein | 96.95 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.91 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.89 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.88 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 96.85 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 96.85 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 96.82 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.71 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 96.71 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 96.69 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 96.69 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 96.65 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 96.65 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.62 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 96.48 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.41 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 96.4 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.36 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.35 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 96.32 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 96.26 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 96.2 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 96.2 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.16 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 96.14 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 96.1 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 96.05 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 96.03 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 95.96 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 95.87 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 95.85 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 95.83 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 95.78 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 95.7 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 95.66 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 95.65 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 95.64 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 95.61 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 95.57 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 95.42 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 95.42 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 95.4 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.34 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 95.32 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 95.31 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 95.22 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 95.21 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 95.07 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 95.06 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 95.06 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 95.03 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 95.01 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 95.0 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 94.98 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 94.96 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 94.82 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 94.81 | |
| PLN02494 | 477 | adenosylhomocysteinase | 94.8 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 94.8 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 94.76 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 94.67 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.64 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 94.52 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 94.5 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 94.38 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 94.28 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 94.26 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 94.2 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 94.13 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 94.09 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 94.06 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 94.05 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 94.0 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 94.0 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.97 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 93.86 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 93.85 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.79 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 93.79 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 93.77 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 93.74 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 93.7 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 93.66 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 93.66 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 93.63 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 93.6 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 93.57 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 93.56 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 93.53 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 93.48 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 93.46 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 93.43 | |
| cd08263 | 367 | Zn_ADH10 Alcohol dehydrogenases of the MDR family. | 93.38 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 93.21 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 93.2 | |
| PLN02702 | 364 | L-idonate 5-dehydrogenase | 93.09 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.09 | |
| cd08265 | 384 | Zn_ADH3 Alcohol dehydrogenases of the MDR family. | 92.88 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 92.85 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 92.84 | |
| cd08284 | 344 | FDH_like_2 Glutathione-dependent formaldehyde dehy | 92.71 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 92.67 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 92.61 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 92.41 | |
| cd08279 | 363 | Zn_ADH_class_III Class III alcohol dehydrogenase. | 92.23 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 92.15 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 92.12 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 92.11 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 92.06 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 92.05 | |
| cd08235 | 343 | iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ | 91.73 | |
| cd08262 | 341 | Zn_ADH8 Alcohol dehydrogenases of the MDR family. | 91.73 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 91.69 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 91.65 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 91.48 | |
| PRK09422 | 338 | ethanol-active dehydrogenase/acetaldehyde-active r | 91.46 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 91.18 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 90.99 | |
| cd08282 | 375 | PFDH_like Pseudomonas putida aldehyde-dismutating | 90.93 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 90.73 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 90.7 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 90.62 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 90.62 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 90.61 | |
| cd05565 | 99 | PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of en | 90.58 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 90.54 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 90.47 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 90.42 | |
| cd05564 | 96 | PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lic | 90.36 | |
| cd08260 | 345 | Zn_ADH6 Alcohol dehydrogenases of the MDR family. | 90.3 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 90.29 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 89.85 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 89.66 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 89.65 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 89.64 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 89.62 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 89.6 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 89.54 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 89.53 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 89.53 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 89.51 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 89.45 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 89.35 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 89.33 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 89.26 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 89.13 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 89.05 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 89.03 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 88.93 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 88.76 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 88.74 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 88.7 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 88.62 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 88.59 | |
| cd05289 | 309 | MDR_like_2 alcohol dehydrogenase and quinone reduc | 88.53 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 88.52 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 88.45 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 88.21 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 88.16 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 88.13 | |
| TIGR00853 | 95 | pts-lac PTS system, lactose/cellobiose family IIB | 88.11 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.76 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 87.57 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 87.45 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 87.38 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 87.27 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 87.06 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 87.05 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 87.04 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 87.0 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 86.94 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 86.88 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 86.68 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 86.61 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 86.58 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 86.57 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.54 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 86.39 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 86.27 | |
| PRK07411 | 390 | hypothetical protein; Validated | 86.17 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 86.16 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 86.13 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 85.8 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 85.79 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 85.64 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 85.58 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 85.57 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 85.57 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 85.55 | |
| PRK13699 | 227 | putative methylase; Provisional | 85.38 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 85.33 | |
| cd08270 | 305 | MDR4 Medium chain dehydrogenases/reductase (MDR)/z | 85.32 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 85.17 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 84.99 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 84.83 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 84.8 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 84.67 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 84.52 | |
| PF08484 | 160 | Methyltransf_14: C-methyltransferase C-terminal do | 84.47 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 84.44 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 84.25 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 84.14 | |
| cd08273 | 331 | MDR8 Medium chain dehydrogenases/reductase (MDR)/z | 83.97 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 83.9 | |
| cd08252 | 336 | AL_MDR Arginate lyase and other MDR family members | 83.55 | |
| PRK08223 | 287 | hypothetical protein; Validated | 83.5 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 83.44 | |
| cd08258 | 306 | Zn_ADH4 Alcohol dehydrogenases of the MDR family. | 83.44 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 83.44 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 83.43 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 82.79 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 82.75 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 82.64 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 82.54 | |
| TIGR02817 | 336 | adh_fam_1 zinc-binding alcohol dehydrogenase famil | 82.45 | |
| TIGR02823 | 323 | oxido_YhdH putative quinone oxidoreductase, YhdH/Y | 82.34 | |
| cd05195 | 293 | enoyl_red enoyl reductase of polyketide synthase. | 82.33 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 82.31 |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=233.20 Aligned_cols=201 Identities=45% Similarity=0.743 Sum_probs=173.8
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
|||+|++.|.+.+++|.+||+++||+.|+|+. ..+|.|.+++++.++++++|.+.+.+++.+. ++++++|||||||
T Consensus 5 lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLeIGtG 82 (209)
T PF01135_consen 5 LVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLEIGTG 82 (209)
T ss_dssp HHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEEES-T
T ss_pred HHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEEecCC
Confidence 79999999988999999999999999999996 7999999999999999999999999999998 9999999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchH
Q 028002 79 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQ 158 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~ 158 (215)
+|+.+..++...++.+.|+++|.++...+.|++++...+. .++.++.+|....++...+||.|++....+.++.
T Consensus 83 sGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip~ 156 (209)
T PF01135_consen 83 SGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIPE 156 (209)
T ss_dssp TSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEEES-GGGTTGGG-SEEEEEESSBBSS--H
T ss_pred CcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEEEcchhhccccCCCcCEEEEeeccchHHH
Confidence 9999999999988777899999999999999999998765 5999999999888877789999999999999999
Q ss_pred HHHHhcCCCcEEEEEeC-CCceeEEEEEEcCCCceEEEeeceEEEeecccCc
Q 028002 159 ALIDQLKPGGRMVIPVG-NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 209 (215)
Q Consensus 159 ~~~~~Lk~gG~lv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 209 (215)
.+.+.|++||+|++++. +..+.+..+++..++.|.....+.++|+|+...+
T Consensus 157 ~l~~qL~~gGrLV~pi~~~~~~~l~~~~k~~~g~~~~~~~~~~~fvpl~~~~ 208 (209)
T PF01135_consen 157 ALLEQLKPGGRLVAPIGQGGSQRLVRITKKGDGEFSREELFPVRFVPLVGGE 208 (209)
T ss_dssp HHHHTEEEEEEEEEEESSSSSEEEEEEEEETTTEEEEEEEEEE---B-BSCC
T ss_pred HHHHhcCCCcEEEEEEccCCceEEEEEEEeCCCcEEEEEEeeEEEEeccCCC
Confidence 99999999999999998 5678899999998899999999999999998865
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=221.69 Aligned_cols=197 Identities=49% Similarity=0.789 Sum_probs=184.7
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
|+++++..| +.++++.+||..+||+.|+|+. ..+|.|.+++++.|+++++|.+.+.|++.+. ++++.+|||||||
T Consensus 6 l~~~lr~~~-i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIGtG 82 (209)
T COG2518 6 LVERLRTEG-ITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTG 82 (209)
T ss_pred HHHHHHHcC-CCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEECCC
Confidence 467889999 5779999999999999999988 8999999999999999999999999999998 9999999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchH
Q 028002 79 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQ 158 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~ 158 (215)
+|+.+..+++.. ++|+.+|..+...+.|++++...+. .|+.++++|....++...+||.|+++...+.+++
T Consensus 83 sGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~------~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~ 153 (209)
T COG2518 83 SGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY------ENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPE 153 (209)
T ss_pred chHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC------CceEEEECCcccCCCCCCCcCEEEEeeccCCCCH
Confidence 999999999997 6999999999999999999998665 5899999999999998899999999999999999
Q ss_pred HHHHhcCCCcEEEEEeC-CCceeEEEEEEcCCCceEEEeeceEEEeecccCc
Q 028002 159 ALIDQLKPGGRMVIPVG-NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 209 (215)
Q Consensus 159 ~~~~~Lk~gG~lv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 209 (215)
.+.+.|++||+++++++ +..+.+..+.+..++.+.....++++|.|+..+.
T Consensus 154 ~Ll~QL~~gGrlv~PvG~~~~q~l~~~~k~~~~~~~~~~l~~v~~vPl~~~~ 205 (209)
T COG2518 154 ALLDQLKPGGRLVIPVGSGPAQRLLRITKDGDGNFERRDLFNVRFVPLVGGD 205 (209)
T ss_pred HHHHhcccCCEEEEEEccCCcEEEEEEEEcCCCcEEEeeeccceeeecCCcc
Confidence 99999999999999999 5678889999988889999999999999999854
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=217.97 Aligned_cols=199 Identities=45% Similarity=0.716 Sum_probs=181.0
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
|||+|++.|.++|++|.++|+++||+.|+|+. ..+|.|.+++++.|+.++.|.+...+++.+. +.++.+|||+|||
T Consensus 9 ~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLdIG~G 86 (212)
T PRK13942 9 VIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGTG 86 (212)
T ss_pred HHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEEEECCc
Confidence 79999999999999999999999999999997 6899999999999999999999999999987 8889999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchH
Q 028002 79 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQ 158 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~ 158 (215)
+|+.+..+++..++.++|+++|+++.+++.+++++...+. .+++++.+|....++...+||+|++....+++++
T Consensus 87 sG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~~ 160 (212)
T PRK13942 87 SGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIPK 160 (212)
T ss_pred ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCcCCCcCEEEECCCcccchH
Confidence 9999999998876667999999999999999999987654 5899999998876665578999999999999999
Q ss_pred HHHHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeecccC
Q 028002 159 ALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSR 208 (215)
Q Consensus 159 ~~~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 208 (215)
.+.+.|||||+|+++.....+.+..+++. .+.|.....++++|+|++..
T Consensus 161 ~l~~~LkpgG~lvi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~ 209 (212)
T PRK13942 161 PLIEQLKDGGIMVIPVGSYSQELIRVEKD-NGKIIKKKLGEVAFVPLIGK 209 (212)
T ss_pred HHHHhhCCCcEEEEEEcCCCcEEEEEEEE-CCEEEEEEeccEEEEecccC
Confidence 99999999999999988777777778775 58899999999999999875
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=212.40 Aligned_cols=203 Identities=45% Similarity=0.762 Sum_probs=181.7
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
|||+|++.|++++++|.++|+++||+.|.|+. ..+|.+.+++++.++++..|.....+++.+. +.++.+|||+|||
T Consensus 10 ~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~G 87 (215)
T TIGR00080 10 LIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVLEIGTG 87 (215)
T ss_pred HHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEEEEECCC
Confidence 79999999988999999999999999999986 6899999999999999999999999999987 7889999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchH
Q 028002 79 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQ 158 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~ 158 (215)
+|+.+..+++..++.++|+++|+++.+++.|++++...+. .+++++.+|....+....+||+|+++....++++
T Consensus 88 sG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~ 161 (215)
T TIGR00080 88 SGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIPE 161 (215)
T ss_pred ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEECCcccCCcccCCCCEEEEcCCcccccH
Confidence 9999999999875557899999999999999999988654 5899999998776555478999999999999999
Q ss_pred HHHHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeecccCcccc
Q 028002 159 ALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQL 212 (215)
Q Consensus 159 ~~~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 212 (215)
.+.+.|+|||+|+++.....+.+..+.+. ++.|.....+++.|+|++.+.++.
T Consensus 162 ~~~~~L~~gG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~ 214 (215)
T TIGR00080 162 ALIDQLKEGGILVMPVGEYLQVLKRAEKR-GGEIIIKDVEPVAFVPLVGGEGFQ 214 (215)
T ss_pred HHHHhcCcCcEEEEEEcCCceEEEEEEEe-CCEEEEEEeeeEEEEeCCCCccCC
Confidence 99999999999999998866667777664 688999999999999999988764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=210.88 Aligned_cols=198 Identities=41% Similarity=0.579 Sum_probs=174.6
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
||++|++.|.+++++|.++|+++||+.|+|+. ..+|.|.++++..++.+..|.....+++.+. +.++.+|||+|||
T Consensus 5 lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~G 82 (205)
T PRK13944 5 LVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEVGTG 82 (205)
T ss_pred HHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEECcC
Confidence 68999999989999999999999999999986 6799999999999999999999999989886 7788999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchH
Q 028002 79 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQ 158 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~ 158 (215)
+|+.+..+++.+++.++|+++|+++.+++.+++++...+.. .+++++.+|..+.++...+||+|+++....++++
T Consensus 83 sG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-----~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~ 157 (205)
T PRK13944 83 SGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-----GVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPS 157 (205)
T ss_pred ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEEECCcccCCccCCCccEEEEccCcchhhH
Confidence 99999999988765579999999999999999999876543 4689999998876655578999999999999999
Q ss_pred HHHHhcCCCcEEEEEeCCC-ceeEEEEEEcCCCceEEEeeceEEEeecc
Q 028002 159 ALIDQLKPGGRMVIPVGNI-FQDLKVVDKNQDGSLSIWSETSVRYVPLT 206 (215)
Q Consensus 159 ~~~~~Lk~gG~lv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 206 (215)
++.+.|+|||+|+++...+ .+.+..+++. ++.|.....+.+.|+|+.
T Consensus 158 ~l~~~L~~gG~lvi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~pl~ 205 (205)
T PRK13944 158 ALVRQLKDGGVLVIPVEEGVGQVLYKVVKR-GEKVEKRAITYVLFVPLR 205 (205)
T ss_pred HHHHhcCcCcEEEEEEcCCCceEEEEEEEe-CCEEEEEEeceEEEEecC
Confidence 9999999999999988764 4556667774 567888889999999974
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=197.05 Aligned_cols=215 Identities=55% Similarity=0.938 Sum_probs=195.9
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
|||+|+++++|+.+++.+||++++|..|.|.. ..+|.|.+..+|++.+++.|.+.+.+++.|..++.||.+.||+|+|
T Consensus 13 LId~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsG 92 (237)
T KOG1661|consen 13 LIDNLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSG 92 (237)
T ss_pred HHHHHHhcchhHHHHHHHHHHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCC
Confidence 68999999999999999999999999999986 7899999999999999999999999999999899999999999999
Q ss_pred ccHHHHHHHHHhCCCCe-EEEEecChHHHHHHHHHHHhhcc----cCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCC
Q 028002 79 TGYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAA----APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
+|+++..++..++..+. ++|||.-++.++.+++++..+-. ...+...++.++.+|....+++..+||.|++.+..
T Consensus 93 SGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa 172 (237)
T KOG1661|consen 93 SGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAA 172 (237)
T ss_pred ccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcceEEEccCc
Confidence 99999999988776544 49999999999999999987642 23345578999999999999888899999999999
Q ss_pred CCchHHHHHhcCCCcEEEEEeC--CCceeEEEEEEcCCCceEEEeeceEEEeecccCccccCCC
Q 028002 154 PEIPQALIDQLKPGGRMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215 (215)
Q Consensus 154 ~~~~~~~~~~Lk~gG~lv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 215 (215)
..+++++...|++||.++++.. ...|.+..+.+..++.-.....+.+.|+|++....|...|
T Consensus 173 ~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~~~~f~v~yvPlt~~~~q~~~~ 236 (237)
T KOG1661|consen 173 SELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKLRTLFSVRYVPLTSRESQPSRF 236 (237)
T ss_pred cccHHHHHHhhccCCeEEEeecccCceeEEEeecccccCceeeeEeeceEEEeccccccccCCC
Confidence 9999999999999999999987 5678899999988899999999999999999999887765
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=191.99 Aligned_cols=197 Identities=42% Similarity=0.667 Sum_probs=173.1
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
||++|+..| +.++++.++|+.+||+.|+|+. ..+|.+..++++.+..+++|.....+++.+. ..++.+|||+|||
T Consensus 12 ~v~~l~~~~-~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VLeiG~G 88 (212)
T PRK00312 12 LVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVLEIGTG 88 (212)
T ss_pred HHHHHHHcC-CCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEEEEECCC
Confidence 689999999 7999999999999999999965 7899999999999999999999999988876 7888999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchH
Q 028002 79 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQ 158 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~ 158 (215)
+|..+..+++.. .+++++|.++.+++.+++++...+. .++++..+|....++..++||+|+++...+++++
T Consensus 89 sG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~ 159 (212)
T PRK00312 89 SGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGL------HNVSVRHGDGWKGWPAYAPFDRILVTAAAPEIPR 159 (212)
T ss_pred ccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCC------CceEEEECCcccCCCcCCCcCEEEEccCchhhhH
Confidence 999999888774 5899999999999999999987654 4799999998766554478999999999999999
Q ss_pred HHHHhcCCCcEEEEEeC-CCceeEEEEEEcCCCceEEEeeceEEEeecccCcc
Q 028002 159 ALIDQLKPGGRMVIPVG-NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 210 (215)
Q Consensus 159 ~~~~~Lk~gG~lv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 210 (215)
.+.+.|+|||.++++.. +..+....+.+ .++.|.....+++.|+|++++.+
T Consensus 160 ~l~~~L~~gG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~ 211 (212)
T PRK00312 160 ALLEQLKEGGILVAPVGGEEQQLLTRVRK-RGGRFEREVLEEVRFVPLVKGEL 211 (212)
T ss_pred HHHHhcCCCcEEEEEEcCCCceEEEEEEE-cCCeEEEEEEccEEEEecCCCCC
Confidence 99999999999999998 44556666666 56789999999999999998765
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=180.04 Aligned_cols=201 Identities=29% Similarity=0.463 Sum_probs=163.4
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC---CCCCcCCCccc-cCC---cccchhHHHHHHHHHHHhcCCCCCEEE
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG---TPPYVDSPMAI-GYN---ATISAPHMHATCLQLLEENLKPGMHAL 73 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~y~~~~~~~-~~~---~~~~~~~~~~~~l~~l~~~~~~~~~vL 73 (215)
|++.++..| +++ +|.+||+++||+.|+|+. ..+|.|.+++. ..+ +.++.|.+...+++.+. ++++.+||
T Consensus 10 lv~~l~~~g-v~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g~~VL 85 (322)
T PRK13943 10 LFWILKKYG-ISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVL 85 (322)
T ss_pred HHHHHHHcC-CcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCCCEEE
Confidence 689999999 477 999999999999999985 46788888875 333 46778888889888876 77889999
Q ss_pred EEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCC
Q 028002 74 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 74 diG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
|+|||+|..+..+++..+..+.|+++|.++.+++.|++++...+. .++.++.+|.........+||+|+++...
T Consensus 86 DIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~ 159 (322)
T PRK13943 86 EIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFVCGDGYYGVPEFAPYDVIFVTVGV 159 (322)
T ss_pred EEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCChhhcccccCCccEEEECCch
Confidence 999999999999999865446799999999999999999887654 57899999987665554689999999888
Q ss_pred CCchHHHHHhcCCCcEEEEEeCCC---ceeEEEEEEcCCCceEEEeeceEEEeecccCcccc
Q 028002 154 PEIPQALIDQLKPGGRMVIPVGNI---FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQL 212 (215)
Q Consensus 154 ~~~~~~~~~~Lk~gG~lv~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 212 (215)
+++++.+.+.|+|||.++++.... .+......+. .+.+.....+..+|+|......++
T Consensus 160 ~~ip~~~~~~LkpgG~Lvv~~~~~l~~~~~~~~~~r~-~~~~~~~~~~~~~~l~~~G~lg~~ 220 (322)
T PRK13943 160 DEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK-DPYLVGNYKLETRFIKAGGNLGNL 220 (322)
T ss_pred HHhHHHHHHhcCCCCEEEEEeCCccCCCCceEEEEec-CCCceEEEEEEeeEEcccchHHHH
Confidence 888889999999999999987542 2334444443 556777788888999986654443
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-18 Score=131.91 Aligned_cols=140 Identities=23% Similarity=0.374 Sum_probs=108.3
Q ss_pred HHHHHHHHhCcCcCCCCCCCCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCC
Q 028002 14 KKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ 93 (215)
Q Consensus 14 ~~~~~~~~~~~r~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~ 93 (215)
+.|...+..+. ..|+..+-.+..|.+... ...+++.+. ..+|.+|||+|||||..+..+++..+ .
T Consensus 11 ~~v~~vF~~ia---------~~YD~~n~~~S~g~~~~W---r~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g-~ 75 (238)
T COG2226 11 EKVQKVFDKVA---------KKYDLMNDLMSFGLHRLW---RRALISLLG--IKPGDKVLDVACGTGDMALLLAKSVG-T 75 (238)
T ss_pred HHHHHHHHhhH---------HHHHhhcccccCcchHHH---HHHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcC-C
Confidence 45555555553 234444434444544332 345555554 55899999999999999999999987 6
Q ss_pred CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCC
Q 028002 94 GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPG 167 (215)
Q Consensus 94 ~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~g 167 (215)
++++++|+|+.|++.+++++...+. .+++++.+|+...+.++++||+|.+...++.+ ++++.++||||
T Consensus 76 g~v~~~D~s~~ML~~a~~k~~~~~~------~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg 149 (238)
T COG2226 76 GEVVGLDISESMLEVAREKLKKKGV------QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG 149 (238)
T ss_pred ceEEEEECCHHHHHHHHHHhhccCc------cceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCC
Confidence 8999999999999999999987654 35999999999988887999999999888654 46899999999
Q ss_pred cEEEEEe
Q 028002 168 GRMVIPV 174 (215)
Q Consensus 168 G~lv~~~ 174 (215)
|++++.-
T Consensus 150 G~~~vle 156 (238)
T COG2226 150 GRLLVLE 156 (238)
T ss_pred eEEEEEE
Confidence 9888743
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-18 Score=134.79 Aligned_cols=130 Identities=27% Similarity=0.452 Sum_probs=79.9
Q ss_pred CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 028002 33 TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 33 ~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 112 (215)
+..|+-.+..+..|.+... ...+++.+. ..++.+|||+|||||.++..+++..++.++|+++|+|+.|++.|+++
T Consensus 17 a~~YD~~n~~ls~g~~~~w---r~~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k 91 (233)
T PF01209_consen 17 APRYDRMNDLLSFGQDRRW---RRKLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKK 91 (233)
T ss_dssp -----------------------SHHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHH
T ss_pred HHHhCCCccccCCcHHHHH---HHHHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHH
Confidence 4455544444444443322 234455554 67789999999999999999998877778999999999999999999
Q ss_pred HHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCch------HHHHHhcCCCcEEEEE
Q 028002 113 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIP 173 (215)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~------~~~~~~Lk~gG~lv~~ 173 (215)
+...+. .+++++++|+.+...++++||+|.+...++.+. +++.++|||||++++.
T Consensus 92 ~~~~~~------~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 92 LKREGL------QNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp HHHTT--------SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHhhCC------CCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 987654 599999999998777668999999998776544 6889999999999873
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=115.60 Aligned_cols=101 Identities=29% Similarity=0.491 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
|+.+|||+|||+|.++..+++.. +..+++++|+|+.+++.+++++...+.. ++++++++|+.......+.||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~~~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLS-----DRITFVQGDAEFDPDFLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTT-----TTEEEEESCCHGGTTTSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC-----CCeEEEECccccCcccCCCCCEE
Confidence 57899999999999999999953 4489999999999999999999555443 79999999992222233679999
Q ss_pred EEcc-CCCC---------chHHHHHhcCCCcEEEEEe
Q 028002 148 HVGA-AAPE---------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 148 ~~~~-~~~~---------~~~~~~~~Lk~gG~lv~~~ 174 (215)
++.. ..++ +++.+.+.|+|||++++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9998 4332 2567899999999999975
|
... |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-17 Score=119.92 Aligned_cols=121 Identities=32% Similarity=0.521 Sum_probs=106.8
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCC
Q 028002 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 125 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 125 (215)
+..++.+.+....+..|. ++++.+++|+|||||+.+..++ +.+|.++++++|.++++++..++|...++. +
T Consensus 14 ~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------~ 84 (187)
T COG2242 14 GGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGV------D 84 (187)
T ss_pred CCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCC------C
Confidence 445789998899999998 9999999999999999999999 557889999999999999999999999774 7
Q ss_pred CeEEEeCCCCCCCCCCCCccEEEEccC--CCCchHHHHHhcCCCcEEEEEeC
Q 028002 126 SLSVHVGDGRKGWPEFAPYDAIHVGAA--APEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 126 ~v~~~~~d~~~~~~~~~~~D~V~~~~~--~~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
|+.++.+++.+.+....++|.||..+. ++.+++.+...|||||+|++..-
T Consensus 85 n~~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 85 NLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred cEEEEeccchHhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEee
Confidence 999999999887776558999999886 34577889999999999999753
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-17 Score=129.29 Aligned_cols=152 Identities=25% Similarity=0.319 Sum_probs=106.8
Q ss_pred CCCHHHHHHHHhC--cC---cC--CCCCCCCC---------CcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEE
Q 028002 11 ITSKKVSEVMETI--DR---AC--FVPDGTPP---------YVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALD 74 (215)
Q Consensus 11 ~~~~~~~~~~~~~--~r---~~--~~~~~~~~---------y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLd 74 (215)
+.+++|.+....- |- ++ ..|.|... --|..++||.|.|.++ ..+++.+.....++.+|||
T Consensus 93 ~~e~DW~~~wk~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT----~lcL~~Le~~~~~g~~vlD 168 (300)
T COG2264 93 EDEEDWEREWKKYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTT----SLCLEALEKLLKKGKTVLD 168 (300)
T ss_pred cChHHHHHHHHhcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhH----HHHHHHHHHhhcCCCEEEE
Confidence 5678888877552 11 11 22544211 1245688999999875 4455555555678999999
Q ss_pred EcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCC-
Q 028002 75 IGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA- 153 (215)
Q Consensus 75 iG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~- 153 (215)
+|||+|.+++.+++. |. .+++|+|+++.+++.+++|+..+++. ..+.....+..... ..++||+|+++--.
T Consensus 169 vGcGSGILaIAa~kL-GA-~~v~g~DiDp~AV~aa~eNa~~N~v~-----~~~~~~~~~~~~~~-~~~~~DvIVANILA~ 240 (300)
T COG2264 169 VGCGSGILAIAAAKL-GA-KKVVGVDIDPQAVEAARENARLNGVE-----LLVQAKGFLLLEVP-ENGPFDVIVANILAE 240 (300)
T ss_pred ecCChhHHHHHHHHc-CC-ceEEEecCCHHHHHHHHHHHHHcCCc-----hhhhcccccchhhc-ccCcccEEEehhhHH
Confidence 999999999999988 55 68999999999999999999987653 11222222222222 22689999988632
Q ss_pred --CCchHHHHHhcCCCcEEEEEe
Q 028002 154 --PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 154 --~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
..+.+.+.+.|||||+++++-
T Consensus 241 vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 241 VLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred HHHHHHHHHHHHcCCCceEEEEe
Confidence 345578899999999999974
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=122.94 Aligned_cols=142 Identities=26% Similarity=0.412 Sum_probs=119.3
Q ss_pred ccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcc
Q 028002 43 IGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL 122 (215)
Q Consensus 43 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 122 (215)
+..+..+-+|.....++..+. +.++++|+|.|+|+|.++..++..+++.++|+.+|+.++..+.|++|++..+..
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~--- 145 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG--- 145 (256)
T ss_pred CcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc---
Confidence 455667777777888888887 999999999999999999999998899999999999999999999999998765
Q ss_pred cCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC-chHHHHHhcCCCcEEEEEeCCCceeEEEEEEcCCCce
Q 028002 123 KEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE-IPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSL 192 (215)
Q Consensus 123 ~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~-~~~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~ 192 (215)
+++++..+|+.+.... +.||+|+.+.+-++ +++.+.+.|+|||.+++-+|+..|.....+...+..|
T Consensus 146 --d~v~~~~~Dv~~~~~~-~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 146 --DRVTLKLGDVREGIDE-EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred --cceEEEeccccccccc-cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 4589999999887666 49999999988765 6789999999999999998887655544444433333
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=121.21 Aligned_cols=108 Identities=26% Similarity=0.294 Sum_probs=86.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+.++.+|||+|||+|.++..+++..++.++|+|+|+|+.|++.|+++...... ....+++++++|+.......++||
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEcccccCCCCCCCEe
Confidence 67789999999999999999988766667999999999999999877542110 012578999999887655557899
Q ss_pred EEEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++...++++ ++++.++|||||++++....
T Consensus 148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred EEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 99998877664 46889999999999886543
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-16 Score=113.77 Aligned_cols=103 Identities=25% Similarity=0.407 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC--CCc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--APY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~ 144 (215)
.++.+|||+|||+|..+..+++..++..+++|+|+++.+++.|++++...+. +++++.++|+.+ ++.. +.|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~-l~~~~~~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIED-LPQELEEKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTC-GCGCSSTTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhc-cccccCCCe
Confidence 3578999999999999999996656678999999999999999999887654 589999999988 4321 789
Q ss_pred cEEEEccCCCC------chHHHHHhcCCCcEEEEEeCC
Q 028002 145 DAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+|++...+++ +++.+.+.|+++|.+++....
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999987654 346789999999999987655
|
... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-15 Score=105.54 Aligned_cols=114 Identities=29% Similarity=0.483 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe
Q 028002 52 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 131 (215)
Q Consensus 52 ~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~ 131 (215)
..+...+++.+. ..++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...+. .+++++.
T Consensus 5 ~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~ 75 (124)
T TIGR02469 5 REVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGV------SNIVIVE 75 (124)
T ss_pred HHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCC------CceEEEe
Confidence 334555666664 5667899999999999999999885 447999999999999999998877543 4788888
Q ss_pred CCCCCCCC-CCCCccEEEEccCCCC---chHHHHHhcCCCcEEEEEe
Q 028002 132 GDGRKGWP-EFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 132 ~d~~~~~~-~~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|...... ..++||.|++...... +++.+.+.|+|||.+++++
T Consensus 76 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 76 GDAPEALEDSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ccccccChhhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 88664222 2268999998875544 6688999999999999875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=118.10 Aligned_cols=113 Identities=19% Similarity=0.368 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..++..+. +.++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++..... .+++++.+|..
T Consensus 35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~ 106 (231)
T TIGR02752 35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAM 106 (231)
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechh
Confidence 45556554 67789999999999999999998876668999999999999999998866443 57899999987
Q ss_pred CCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028002 136 KGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
......++||+|++...++++ ++++.++|+|||++++....
T Consensus 107 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 107 ELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred cCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 654444789999988776553 46788999999999986543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=126.93 Aligned_cols=143 Identities=27% Similarity=0.453 Sum_probs=99.6
Q ss_pred cCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh
Q 028002 37 VDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116 (215)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 116 (215)
-+..++||.|.|.++ ..+++.+.....++.+|||+|||||.+++..++. |. .+|+++|+++.+++.|++|+..+
T Consensus 134 idPg~AFGTG~H~TT----~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-GA-~~v~a~DiDp~Av~~a~~N~~~N 207 (295)
T PF06325_consen 134 IDPGMAFGTGHHPTT----RLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-GA-KKVVAIDIDPLAVEAARENAELN 207 (295)
T ss_dssp ESTTSSS-SSHCHHH----HHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-TB-SEEEEEESSCHHHHHHHHHHHHT
T ss_pred ECCCCcccCCCCHHH----HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEecCCHHHHHHHHHHHHHc
Confidence 455688999999875 4445555444778899999999999999999987 55 68999999999999999999998
Q ss_pred cccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC---CchHHHHHhcCCCcEEEEEeC--CC--------ceeEEE
Q 028002 117 AAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPVG--NI--------FQDLKV 183 (215)
Q Consensus 117 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~---~~~~~~~~~Lk~gG~lv~~~~--~~--------~~~~~~ 183 (215)
+.. .++.+. . ...... ++||+|+++-... .+...+.++|+|||+|+++-- .. .+.+..
T Consensus 208 ~~~-----~~~~v~--~-~~~~~~-~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~ 278 (295)
T PF06325_consen 208 GVE-----DRIEVS--L-SEDLVE-GKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFEL 278 (295)
T ss_dssp T-T-----TCEEES--C-TSCTCC-S-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEE
T ss_pred CCC-----eeEEEE--E-eccccc-ccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEE
Confidence 875 455442 1 122222 7899999886543 444677889999999999731 10 023555
Q ss_pred EEEcCCCceEE
Q 028002 184 VDKNQDGSLSI 194 (215)
Q Consensus 184 ~~~~~~~~~~~ 194 (215)
.+....+.|..
T Consensus 279 ~~~~~~~~W~~ 289 (295)
T PF06325_consen 279 VEEREEGEWVA 289 (295)
T ss_dssp EEEEEETTEEE
T ss_pred EEEEEECCEEE
Confidence 55555666654
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-16 Score=123.14 Aligned_cols=139 Identities=27% Similarity=0.390 Sum_probs=107.1
Q ss_pred ccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccC
Q 028002 41 MAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120 (215)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 120 (215)
+.+.....+.+|.....++..+. +.||++|||.|+|+|.++..+++.+++.++|+.+|..+...+.|+++++.++..
T Consensus 15 ~~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~- 91 (247)
T PF08704_consen 15 LSLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD- 91 (247)
T ss_dssp HTS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-
T ss_pred HhccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-
Confidence 34455677888888999999988 999999999999999999999999999999999999999999999999998875
Q ss_pred cccCCCeEEEeCCCCC-CCCC--CCCccEEEEccCCCC-chHHHHHhc-CCCcEEEEEeCCCceeEEEEEE
Q 028002 121 LLKEGSLSVHVGDGRK-GWPE--FAPYDAIHVGAAAPE-IPQALIDQL-KPGGRMVIPVGNIFQDLKVVDK 186 (215)
Q Consensus 121 ~~~~~~v~~~~~d~~~-~~~~--~~~~D~V~~~~~~~~-~~~~~~~~L-k~gG~lv~~~~~~~~~~~~~~~ 186 (215)
+++++.+.|+.. .+.. ...+|.|+.+.+-++ .++.+.+.| ++||++++-+|+..|....+..
T Consensus 92 ----~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~ 158 (247)
T PF08704_consen 92 ----DNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEA 158 (247)
T ss_dssp ----TTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHH
T ss_pred ----CCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHH
Confidence 689999999853 3321 267999999998876 678899999 8999999998886544443333
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=113.25 Aligned_cols=104 Identities=21% Similarity=0.301 Sum_probs=87.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
++++.+|||+|||+|..+..+++.. +..+|+++|.++.+++.+++++...+. .+++++.+|..+... .++||
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~~~~-~~~fD 114 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEEFGQ-EEKFD 114 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhhCCC-CCCcc
Confidence 4568999999999999999999864 558999999999999999999988664 469999999877554 47899
Q ss_pred EEEEccC--CCCchHHHHHhcCCCcEEEEEeCCC
Q 028002 146 AIHVGAA--APEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~--~~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+|++... .+.+++.+.++|+|||.+++..+..
T Consensus 115 lV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 115 VVTSRAVASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred EEEEccccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 9998753 2356678999999999999987653
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=124.55 Aligned_cols=102 Identities=21% Similarity=0.248 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.++.+|||+|||+|..+..+++.++ .+|+|+|+++.+++.++++....+.. +++.++.+|+.......++||+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~~-----~~v~~~~~D~~~~~~~~~~FD~ 189 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGLS-----DKVSFQVADALNQPFEDGQFDL 189 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEEcCcccCCCCCCCccE
Confidence 5678999999999999999998753 69999999999999999988765543 5799999998776555589999
Q ss_pred EEEccCCCCc------hHHHHHhcCCCcEEEEEeC
Q 028002 147 IHVGAAAPEI------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 147 V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~ 175 (215)
|++...++++ ++++.++|||||.+++...
T Consensus 190 V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 190 VWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred EEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9998887664 3578999999999999654
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=116.43 Aligned_cols=121 Identities=28% Similarity=0.399 Sum_probs=95.5
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028002 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
.++.+.+....+..+. +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+++++...+.. +++
T Consensus 22 ~~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-----~~v 94 (198)
T PRK00377 22 PMTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-----NNI 94 (198)
T ss_pred CCCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CCe
Confidence 3566666555566665 788899999999999999999887666679999999999999999998876532 578
Q ss_pred EEEeCCCCCCCCC-CCCccEEEEccCC---CCchHHHHHhcCCCcEEEEEeC
Q 028002 128 SVHVGDGRKGWPE-FAPYDAIHVGAAA---PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 128 ~~~~~d~~~~~~~-~~~~D~V~~~~~~---~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
.++.+|..+..+. .+.||.|++.... ..+++.+.+.|+|||++++...
T Consensus 95 ~~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 95 VLIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred EEEEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 8888888654332 2679999986543 4466788899999999998554
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=113.73 Aligned_cols=112 Identities=23% Similarity=0.372 Sum_probs=88.6
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+.. .++.+|||+|||+|.++..+++. ++..+++++|+++.+++.+++++..++.. ++++...|..
T Consensus 21 ~lL~~~l~~--~~~~~vLDlG~G~G~i~~~la~~-~~~~~v~~vDi~~~a~~~a~~n~~~n~~~------~v~~~~~d~~ 91 (170)
T PF05175_consen 21 RLLLDNLPK--HKGGRVLDLGCGSGVISLALAKR-GPDAKVTAVDINPDALELAKRNAERNGLE------NVEVVQSDLF 91 (170)
T ss_dssp HHHHHHHHH--HTTCEEEEETSTTSHHHHHHHHT-STCEEEEEEESBHHHHHHHHHHHHHTTCT------TEEEEESSTT
T ss_pred HHHHHHHhh--ccCCeEEEecCChHHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHHHHhcCcc------cccccccccc
Confidence 345555652 26789999999999999999988 46568999999999999999999987753 4999999988
Q ss_pred CCCCCCCCccEEEEccCCCC-----------chHHHHHhcCCCcEEEEEeCCC
Q 028002 136 KGWPEFAPYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~-----------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+... .++||+|+++++++. +++.+.++|+|||.|++.....
T Consensus 92 ~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 92 EALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp TTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred cccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 7666 389999999998742 3356789999999998766543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.2e-15 Score=111.93 Aligned_cols=116 Identities=26% Similarity=0.426 Sum_probs=92.0
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028002 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
.++.+.+...+++.+. ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...+. .++
T Consensus 13 ~~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~------~~i 83 (187)
T PRK08287 13 PMTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC------GNI 83 (187)
T ss_pred CCchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC------CCe
Confidence 3556666666667775 6678999999999999999999884 668999999999999999999877553 468
Q ss_pred EEEeCCCCCCCCCCCCccEEEEccCCC---CchHHHHHhcCCCcEEEEEe
Q 028002 128 SVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 128 ~~~~~d~~~~~~~~~~~D~V~~~~~~~---~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+++.+|..... .+.||+|++..... .+++.+.+.|+|||++++..
T Consensus 84 ~~~~~d~~~~~--~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 84 DIIPGEAPIEL--PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EEEecCchhhc--CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence 88888875332 25799999877543 35567889999999999864
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-15 Score=119.80 Aligned_cols=126 Identities=24% Similarity=0.329 Sum_probs=92.5
Q ss_pred cCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh
Q 028002 37 VDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116 (215)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 116 (215)
.+..+++|.|.|.+.. .+++.+.....++.+|||+|||+|.++..+++. +. .+++++|+++.+++.+++++..+
T Consensus 132 ldpg~aFgtG~h~tt~----l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g~-~~V~avDid~~al~~a~~n~~~n 205 (288)
T TIGR00406 132 LDPGLAFGTGTHPTTS----LCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-GA-AKVVGIDIDPLAVESARKNAELN 205 (288)
T ss_pred ECCCCcccCCCCHHHH----HHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHc
Confidence 3456778888776543 334444333557899999999999999888875 44 68999999999999999998876
Q ss_pred cccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC---CchHHHHHhcCCCcEEEEEeC
Q 028002 117 AAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 117 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~---~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
+.. ..+.+...+.... . .++||+|+++...+ .++..+.+.|||||+++++..
T Consensus 206 ~~~-----~~~~~~~~~~~~~-~-~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 206 QVS-----DRLQVKLIYLEQP-I-EGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred CCC-----cceEEEecccccc-c-CCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 543 3556666553222 2 36899999987554 355678899999999999753
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-16 Score=119.91 Aligned_cols=132 Identities=20% Similarity=0.338 Sum_probs=102.1
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
-++.+|||+|||.|.++..+|+. | ..|+|+|.++..++.|+....+.++ ++++.+....+.....++||+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-G--a~VtgiD~se~~I~~Ak~ha~e~gv-------~i~y~~~~~edl~~~~~~FDv 127 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-G--ASVTGIDASEKPIEVAKLHALESGV-------NIDYRQATVEDLASAGGQFDV 127 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-C--CeeEEecCChHHHHHHHHhhhhccc-------cccchhhhHHHHHhcCCCccE
Confidence 36899999999999999999998 4 7999999999999999988777553 456666666655544479999
Q ss_pred EEEccCCCCch------HHHHHhcCCCcEEEEEeCCCc----------------------eeE-------EEEEEcCCCc
Q 028002 147 IHVGAAAPEIP------QALIDQLKPGGRMVIPVGNIF----------------------QDL-------KVVDKNQDGS 191 (215)
Q Consensus 147 V~~~~~~~~~~------~~~~~~Lk~gG~lv~~~~~~~----------------------~~~-------~~~~~~~~~~ 191 (215)
|+|..+++|++ ..+.+++||||.+++++.+.. ... .++.......
T Consensus 128 V~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 128 VTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred EEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCC
Confidence 99999998866 468899999999999876532 111 1222234457
Q ss_pred eEEEeeceEEEeecccC
Q 028002 192 LSIWSETSVRYVPLTSR 208 (215)
Q Consensus 192 ~~~~~~~~~~~~p~~~~ 208 (215)
|.......+.|.|....
T Consensus 208 ~~~~~~~g~~y~p~~~~ 224 (243)
T COG2227 208 LKIIDRKGLTYNPLTNS 224 (243)
T ss_pred ceEEeecceEeccccce
Confidence 77777888888887754
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-15 Score=120.75 Aligned_cols=138 Identities=19% Similarity=0.249 Sum_probs=100.2
Q ss_pred CCCcCCCccccCCcccchhHHHHHHHHHHHhc--CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 028002 34 PPYVDSPMAIGYNATISAPHMHATCLQLLEEN--LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111 (215)
Q Consensus 34 ~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 111 (215)
..+....+.++.+..++.|.....+...+... ..++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.|++
T Consensus 85 ~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~ 163 (284)
T TIGR03533 85 AWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEI 163 (284)
T ss_pred CeecCcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 34444556666666666665333333333211 2345799999999999999999884 55799999999999999999
Q ss_pred HHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC-------------------------------CchHHH
Q 028002 112 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-------------------------------EIPQAL 160 (215)
Q Consensus 112 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~-------------------------------~~~~~~ 160 (215)
++..++.. .++.++.+|+.+..+. ++||+|+++++.. .++..+
T Consensus 164 n~~~~~~~-----~~i~~~~~D~~~~~~~-~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a 237 (284)
T TIGR03533 164 NIERHGLE-----DRVTLIQSDLFAALPG-RKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEA 237 (284)
T ss_pred HHHHcCCC-----CcEEEEECchhhccCC-CCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHH
Confidence 99876653 4789999998665433 5899999986531 123456
Q ss_pred HHhcCCCcEEEEEeCCCc
Q 028002 161 IDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 161 ~~~Lk~gG~lv~~~~~~~ 178 (215)
.++|+|||++++.++...
T Consensus 238 ~~~L~~gG~l~~e~g~~~ 255 (284)
T TIGR03533 238 ADHLNENGVLVVEVGNSM 255 (284)
T ss_pred HHhcCCCCEEEEEECcCH
Confidence 789999999999988643
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=113.13 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=82.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
++.+|||+|||+|..+..++.. ++..+|+++|.++.+++.++++++..+. .+++++.+|+.+.. ..++||+|
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~~~-~~~~fD~I 113 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAEDFQ-HEEQFDVI 113 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhhcc-ccCCccEE
Confidence 3789999999999999999876 4667899999999999999998877654 47999999987743 33789999
Q ss_pred EEccCCCC---chHHHHHhcCCCcEEEEEeCCC
Q 028002 148 HVGAAAPE---IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 148 ~~~~~~~~---~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+++. +.+ +.+.+.++|+|||.+++..+..
T Consensus 114 ~s~~-~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 145 (181)
T TIGR00138 114 TSRA-LASLNVLLELTLNLLKVGGYFLAYKGKK 145 (181)
T ss_pred Eehh-hhCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 9986 433 4467889999999999987643
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-15 Score=117.20 Aligned_cols=109 Identities=31% Similarity=0.362 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
....+++.+. ++||++|||||||.|.+++.+|+..+ .+|+|+++|++..+.+++++...+.. .++++...|
T Consensus 60 k~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~-----~~v~v~l~d 130 (283)
T COG2230 60 KLDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLE-----DNVEVRLQD 130 (283)
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCC-----cccEEEecc
Confidence 3445566665 89999999999999999999999974 79999999999999999999988775 689999999
Q ss_pred CCCCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEEe
Q 028002 134 GRKGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~ 174 (215)
..+.. +.||.|++...+++ +++.+.++|+|||.+++-+
T Consensus 131 ~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 131 YRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 87765 34999999998765 4467899999999998744
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=119.21 Aligned_cols=107 Identities=27% Similarity=0.315 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+. +++|.+|||||||.|.++..+++..| .+|+|+.+|+...+.+++++...++. +++++...|.
T Consensus 51 ~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~-----~~v~v~~~D~ 121 (273)
T PF02353_consen 51 LDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLE-----DRVEVRLQDY 121 (273)
T ss_dssp HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSS-----STEEEEES-G
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEEeec
Confidence 444555554 89999999999999999999999974 79999999999999999999988765 6899999998
Q ss_pred CCCCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEE
Q 028002 135 RKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIP 173 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~ 173 (215)
.+.. .+||.|++...++++ ++.+.++|||||.+++.
T Consensus 122 ~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 122 RDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp GG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred cccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 7643 389999999988765 46788999999999874
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-15 Score=117.86 Aligned_cols=104 Identities=23% Similarity=0.326 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ..++.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.+++ .+++++.+|+.
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~-------------~~~~~~~~d~~ 82 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARE-------------RGVDARTGDVR 82 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh-------------cCCcEEEcChh
Confidence 45566654 5677899999999999999999885 55799999999999999864 25678889887
Q ss_pred CCCCCCCCccEEEEccCCCCch------HHHHHhcCCCcEEEEEeCC
Q 028002 136 KGWPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~~------~~~~~~Lk~gG~lv~~~~~ 176 (215)
... ..++||+|+++..++++. +++.+.|||||.+++.+++
T Consensus 83 ~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 83 DWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 553 337899999999887654 5788999999999997654
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8e-15 Score=111.76 Aligned_cols=105 Identities=18% Similarity=0.133 Sum_probs=82.3
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ..++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.++++....+. .++++..+|+.
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~ 88 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLN 88 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChh
Confidence 34445554 4456899999999999999999873 6899999999999999988876543 46888888886
Q ss_pred CCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEE
Q 028002 136 KGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~ 172 (215)
..... ++||+|++...+++ +++.+.++|+|||++++
T Consensus 89 ~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 89 NLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 64443 67999999887643 33578899999999654
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-15 Score=100.53 Aligned_cols=89 Identities=27% Similarity=0.448 Sum_probs=73.4
Q ss_pred EEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccC
Q 028002 73 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA 152 (215)
Q Consensus 73 LdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~ 152 (215)
||+|||+|..+..+++. + ..+++++|+++.+++.++++... .++.+..+|........++||+|++...
T Consensus 1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l~~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDLPFPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSSSS-TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhCccccccccccccccc
Confidence 89999999999999998 2 38999999999999999987654 4566999999887666689999999998
Q ss_pred CCCc------hHHHHHhcCCCcEEEE
Q 028002 153 APEI------PQALIDQLKPGGRMVI 172 (215)
Q Consensus 153 ~~~~------~~~~~~~Lk~gG~lv~ 172 (215)
++++ ++++.++|||||++++
T Consensus 70 ~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 70 LHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 8765 3678999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-15 Score=121.08 Aligned_cols=102 Identities=22% Similarity=0.273 Sum_probs=82.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
++.+|||+|||+|.++..+++. + .+|+|+|.++.+++.|+++....... .++.++++++.+.....++||+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g--~~V~GID~s~~~i~~Ar~~~~~~~~~-----~~i~~~~~dae~l~~~~~~FD~V 202 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-G--ATVTGVDAVDKNVKIARLHADMDPVT-----STIEYLCTTAEKLADEGRKFDAV 202 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHhcCcc-----cceeEEecCHHHhhhccCCCCEE
Confidence 4679999999999999999875 3 68999999999999999876543221 47899999887654444789999
Q ss_pred EEccCCCCc------hHHHHHhcCCCcEEEEEeCCC
Q 028002 148 HVGAAAPEI------PQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 148 ~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
++...++++ ++++.++|||||.+++++.+.
T Consensus 203 i~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 203 LSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred EEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 999988765 367899999999999987654
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=114.26 Aligned_cols=103 Identities=17% Similarity=0.285 Sum_probs=83.8
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
.+.++.+|||+|||+|..+..+++.+ .+..+++++|+|+.|++.|++++...+.. .+++++.+|+.+... ..
T Consensus 53 ~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-----~~v~~~~~d~~~~~~--~~ 125 (247)
T PRK15451 53 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-----TPVDVIEGDIRDIAI--EN 125 (247)
T ss_pred hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-----CCeEEEeCChhhCCC--CC
Confidence 35678899999999999999888753 35689999999999999999998775543 478999999876543 45
Q ss_pred ccEEEEccCCCC--------chHHHHHhcCCCcEEEEEe
Q 028002 144 YDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 144 ~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+|+++..+++ +++++.+.|||||.|++..
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999998876654 4467899999999999964
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=115.55 Aligned_cols=107 Identities=20% Similarity=0.289 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+. ..++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.+++++ .++.+..+|+
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----------~~~~~~~~d~ 85 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----------PDCQFVEADI 85 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----------CCCeEEECch
Confidence 345555554 5677899999999999999999885 4579999999999999998753 4678888888
Q ss_pred CCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028002 135 RKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
....+. ++||+|+++..++++ ++++.+.|||||.+++.+++
T Consensus 86 ~~~~~~-~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 86 ASWQPP-QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred hccCCC-CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 654433 689999999988654 35788999999999998754
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=114.39 Aligned_cols=117 Identities=30% Similarity=0.471 Sum_probs=84.9
Q ss_pred CCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcc
Q 028002 39 SPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118 (215)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~ 118 (215)
..++++.|.+.+. ..+++.+.....++.+|||+|||+|.++..+++. +. .+++++|+|+.+++.|++++..++.
T Consensus 94 p~~afgtg~h~tt----~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~~~ 167 (250)
T PRK00517 94 PGMAFGTGTHPTT----RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELNGV 167 (250)
T ss_pred CCCccCCCCCHHH----HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcCC
Confidence 3456777776553 3344444433567899999999999999887765 54 4699999999999999999877553
Q ss_pred cCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC---CchHHHHHhcCCCcEEEEEe
Q 028002 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 119 ~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~---~~~~~~~~~Lk~gG~lv~~~ 174 (215)
. ..+.+..++ .+||+|+++...+ .+.+.+.++|||||.++++.
T Consensus 168 ~-----~~~~~~~~~--------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 168 E-----LNVYLPQGD--------LKADVIVANILANPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred C-----ceEEEccCC--------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 233333322 2799999876543 34567889999999999974
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.2e-15 Score=115.85 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-CCCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D 145 (215)
.++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.|++++...+.. .+++++++++.+.. ...++||
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~-----~~v~~~~~d~~~l~~~~~~~fD 114 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVS-----DNMQFIHCAAQDIAQHLETPVD 114 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCc-----cceEEEEcCHHHHhhhcCCCCC
Confidence 446799999999999999999873 78999999999999999998776543 57899999886542 2237899
Q ss_pred EEEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++...++++ ++++.++|||||.+++...+
T Consensus 115 ~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 115 LILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred EEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 99999877544 46789999999999887554
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=108.94 Aligned_cols=123 Identities=25% Similarity=0.397 Sum_probs=93.3
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCC
Q 028002 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 125 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 125 (215)
+..++.+.+...++..+. ..++.+|||+|||+|.++..+++. .+..+++++|+++.+++.+++++...+. .
T Consensus 20 ~~p~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~-~~~~~V~~vD~s~~~~~~a~~n~~~~~~------~ 90 (196)
T PRK07402 20 GIPLTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLL-CPKGRVIAIERDEEVVNLIRRNCDRFGV------K 90 (196)
T ss_pred CCCCCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCC------C
Confidence 444566665556677765 678899999999999999999876 3558999999999999999999887654 4
Q ss_pred CeEEEeCCCCCCCCC-CCCccEEEEccC--CCCchHHHHHhcCCCcEEEEEeCCC
Q 028002 126 SLSVHVGDGRKGWPE-FAPYDAIHVGAA--APEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 126 ~v~~~~~d~~~~~~~-~~~~D~V~~~~~--~~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+++++.+|+.+.... ...+|.++.... +..+++.+.+.|+|||++++..++.
T Consensus 91 ~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 91 NVEVIEGSAPECLAQLAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CeEEEECchHHHHhhCCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 789999887543221 134677766543 2356688899999999999987653
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=8e-15 Score=124.72 Aligned_cols=149 Identities=15% Similarity=0.230 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
+...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+|+.+++.|++++..++. .+++++.+|
T Consensus 285 l~~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d 353 (443)
T PRK13168 285 MVARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL------DNVTFYHAN 353 (443)
T ss_pred HHHHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeC
Confidence 3444455443 5677899999999999999999874 6899999999999999999887654 479999999
Q ss_pred CCCCCC----CCCCccEEEEccCCCCchHHH--HHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeeccc
Q 028002 134 GRKGWP----EFAPYDAIHVGAAAPEIPQAL--IDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTS 207 (215)
Q Consensus 134 ~~~~~~----~~~~~D~V~~~~~~~~~~~~~--~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 207 (215)
+.+... ..++||+|+++++.....+.+ ...++|++.++++++... ..+.+....+..|.......+.+.|.|+
T Consensus 354 ~~~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~~~ivyvSCnp~t-laRDl~~L~~~gY~l~~i~~~DmFP~T~ 432 (443)
T PRK13168 354 LEEDFTDQPWALGGFDKVLLDPPRAGAAEVMQALAKLGPKRIVYVSCNPAT-LARDAGVLVEAGYRLKRAGMLDMFPHTG 432 (443)
T ss_pred hHHhhhhhhhhcCCCCEEEECcCCcChHHHHHHHHhcCCCeEEEEEeChHH-hhccHHHHhhCCcEEEEEEEeccCCCCC
Confidence 865432 225799999998875443322 233689999999875532 3444444446679999999999999999
Q ss_pred CccccCC
Q 028002 208 RDAQLRG 214 (215)
Q Consensus 208 ~~~~~~~ 214 (215)
+.+.+..
T Consensus 433 HvE~v~l 439 (443)
T PRK13168 433 HVESMAL 439 (443)
T ss_pred cEEEEEE
Confidence 9987653
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-14 Score=115.56 Aligned_cols=136 Identities=19% Similarity=0.245 Sum_probs=98.3
Q ss_pred CCcCCCccccCCcccchhHHHHHHHHHHHhcCC--CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 028002 35 PYVDSPMAIGYNATISAPHMHATCLQLLEENLK--PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 35 ~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 112 (215)
.+....+.++.+..++.|.....+...+..... +..+|||+|||+|.++..+++.. +..+++++|+|+.+++.|+++
T Consensus 98 ~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n 176 (307)
T PRK11805 98 WFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEIN 176 (307)
T ss_pred eEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHH
Confidence 333444555666666666543333333321122 22689999999999999999884 557999999999999999999
Q ss_pred HHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC-------------------------------CchHHHH
Q 028002 113 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-------------------------------EIPQALI 161 (215)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~-------------------------------~~~~~~~ 161 (215)
+...+.. .+++++.+|+.+..+. ++||+|+++++.- .+++.+.
T Consensus 177 ~~~~~l~-----~~i~~~~~D~~~~l~~-~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~ 250 (307)
T PRK11805 177 IERHGLE-----DRVTLIESDLFAALPG-RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAP 250 (307)
T ss_pred HHHhCCC-----CcEEEEECchhhhCCC-CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHH
Confidence 9876643 4699999998665543 5899999986531 1234567
Q ss_pred HhcCCCcEEEEEeCCC
Q 028002 162 DQLKPGGRMVIPVGNI 177 (215)
Q Consensus 162 ~~Lk~gG~lv~~~~~~ 177 (215)
++|+|||.+++.++..
T Consensus 251 ~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 251 DYLTEDGVLVVEVGNS 266 (307)
T ss_pred HhcCCCCEEEEEECcC
Confidence 8999999999988765
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=114.70 Aligned_cols=102 Identities=30% Similarity=0.452 Sum_probs=85.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+.++.+|||+|||+|..+..+++..++.++++++|+++.+++.|+++....+. .++++..+|+.......+.||
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhhCCCCCCcee
Confidence 67889999999999999888888777767899999999999999998876543 578899999876544446899
Q ss_pred EEEEccCCCC------chHHHHHhcCCCcEEEEE
Q 028002 146 AIHVGAAAPE------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+++..+++ +++++.++|||||++++.
T Consensus 149 ~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 149 VIISNCVINLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 9998876543 457889999999999985
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-14 Score=108.97 Aligned_cols=105 Identities=19% Similarity=0.227 Sum_probs=79.3
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ..++.+|||+|||+|..+..+++. + .+|+++|+|+.+++.++++....+. ++.+...|..
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~-g--~~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~ 87 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA-G--YDVRAWDHNPASIASVLDMKARENL-------PLRTDAYDIN 87 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccch
Confidence 45555554 445679999999999999999986 3 6899999999999999888765442 3566667765
Q ss_pred CCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEE
Q 028002 136 KGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~ 173 (215)
..... ++||+|++...+++ +++.+.++|+|||++++.
T Consensus 88 ~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 88 AAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred hcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 43333 57999999877654 335788999999986553
|
Part of a tellurite-reducing operon tehA and tehB |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.7e-15 Score=110.40 Aligned_cols=107 Identities=24% Similarity=0.402 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.++..+. +....+|.|+|||+|..+..++++. |...++|+|.|++|++.|++++ .+.+|..+|+..
T Consensus 21 dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~ 86 (257)
T COG4106 21 DLLARVP--LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRT 86 (257)
T ss_pred HHHhhCC--ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhh
Confidence 3344443 5556899999999999999999997 6689999999999999998764 688999999877
Q ss_pred CCCCCCCccEEEEccCCCCch------HHHHHhcCCCcEEEEEeCCCc
Q 028002 137 GWPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~------~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
.-+. .+.|+++++.+++.++ ..+...|.|||+|.+..|++.
T Consensus 87 w~p~-~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 87 WKPE-QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred cCCC-CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCcc
Confidence 5444 7899999999987655 578899999999999888764
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-14 Score=117.58 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=87.3
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+++.+. ...+.+|||+|||+|.++..+++. .|..+++++|.|+.+++.+++++..+... ...++++...|...
T Consensus 219 llL~~lp--~~~~~~VLDLGCGtGvi~i~la~~-~P~~~V~~vD~S~~Av~~A~~N~~~n~~~---~~~~v~~~~~D~l~ 292 (378)
T PRK15001 219 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDK-NPQAKVVFVDESPMAVASSRLNVETNMPE---ALDRCEFMINNALS 292 (378)
T ss_pred HHHHhCC--cccCCeEEEEeccccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCcc---cCceEEEEEccccc
Confidence 3444443 233469999999999999999988 46689999999999999999998765421 11367888888866
Q ss_pred CCCCCCCccEEEEccCCCC-----------chHHHHHhcCCCcEEEEEeCC
Q 028002 137 GWPEFAPYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~-----------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.... ++||+|+++++++. ++..+.++|+|||.|++..+.
T Consensus 293 ~~~~-~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 293 GVEP-FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred cCCC-CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 5433 68999999988753 335678899999999998644
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=113.57 Aligned_cols=109 Identities=22% Similarity=0.186 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+. +.++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.+++++.. ..++.+..+|+
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~ 108 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDI 108 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCc
Confidence 556666665 78889999999999999998887642 6899999999999999987643 15789999998
Q ss_pred CCCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEEeC
Q 028002 135 RKGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~~ 175 (215)
.......++||+|++...+.+ +++++.++|||||+++++..
T Consensus 109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 765444478999998665433 34678899999999998643
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-14 Score=109.66 Aligned_cols=103 Identities=23% Similarity=0.259 Sum_probs=83.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC-CCCC--CCCCCc
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-RKGW--PEFAPY 144 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~~ 144 (215)
++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...+. .++.++++|+ .... ...++|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~ 112 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVEVLLDMFPDGSL 112 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHHHHHHHcCcccc
Confidence 57899999999999999999875 557899999999999999998876543 5799999998 4322 233789
Q ss_pred cEEEEccCC--------------CCchHHHHHhcCCCcEEEEEeCCC
Q 028002 145 DAIHVGAAA--------------PEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~--------------~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|.|++..+. ..+++++.++|||||.+++.+++.
T Consensus 113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 999886543 225678899999999999987664
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=112.64 Aligned_cols=106 Identities=19% Similarity=0.239 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+. ..+..+|||+|||+|.++..+++. + .+++++|+|+.+++.++++.. ...++.+|+
T Consensus 31 a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~~~D~s~~~l~~a~~~~~-----------~~~~~~~d~ 94 (251)
T PRK10258 31 ADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER-G--SQVTALDLSPPMLAQARQKDA-----------ADHYLAGDI 94 (251)
T ss_pred HHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc-C--CeEEEEECCHHHHHHHHhhCC-----------CCCEEEcCc
Confidence 444555554 345679999999999999888875 3 789999999999999987532 345778888
Q ss_pred CCCCCCCCCccEEEEccCCCC------chHHHHHhcCCCcEEEEEeCC
Q 028002 135 RKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.......++||+|+++..+++ ++.++.++|+|||.+++++..
T Consensus 95 ~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 95 ESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred ccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 765444478999999887654 356889999999999998754
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=108.61 Aligned_cols=102 Identities=16% Similarity=0.229 Sum_probs=83.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
..++.+|||+|||+|..+..+++.+. +..+++++|+|+.+++.|++++...... .+++++.+|+..... ..+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~--~~~ 123 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-----IPVEILCNDIRHVEI--KNA 123 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-----CCeEEEECChhhCCC--CCC
Confidence 45778999999999999999998752 4589999999999999999988764332 478999999876543 358
Q ss_pred cEEEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028002 145 DAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 145 D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
|+|++...++++ ++++.+.|+|||.+++..
T Consensus 124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 999988877654 357889999999999974
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.2e-14 Score=115.23 Aligned_cols=136 Identities=18% Similarity=0.229 Sum_probs=99.0
Q ss_pred CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 028002 33 TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 33 ~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 112 (215)
...|.+..+..+.+..++.|. ...+++.+...+.++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.|+++
T Consensus 217 ~~~F~G~~f~V~p~vLIPRpe-TE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreN 294 (423)
T PRK14966 217 VREFYGRRFAVNPNVLIPRPE-TEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKN 294 (423)
T ss_pred eeeecCcEEEeCCCccCCCcc-HHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHH
Confidence 344555566666677666665 344444433235566799999999999999998874 557999999999999999999
Q ss_pred HHhhcccCcccCCCeEEEeCCCCCCC-CCCCCccEEEEccCCC-------------------------------CchHHH
Q 028002 113 IEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYDAIHVGAAAP-------------------------------EIPQAL 160 (215)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~V~~~~~~~-------------------------------~~~~~~ 160 (215)
+...+ .+++++++|+.+.. +..++||+|+++++.- .+.+.+
T Consensus 295 a~~~g-------~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a 367 (423)
T PRK14966 295 AADLG-------ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGA 367 (423)
T ss_pred HHHcC-------CcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHH
Confidence 87653 37899999986532 2235799999998641 112345
Q ss_pred HHhcCCCcEEEEEeCCC
Q 028002 161 IDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 161 ~~~Lk~gG~lv~~~~~~ 177 (215)
.+.|+|||.+++.++..
T Consensus 368 ~~~LkpgG~lilEiG~~ 384 (423)
T PRK14966 368 PDRLAEGGFLLLEHGFD 384 (423)
T ss_pred HHhcCCCcEEEEEECcc
Confidence 67899999999987653
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.7e-14 Score=106.57 Aligned_cols=100 Identities=22% Similarity=0.207 Sum_probs=80.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++..++ .++++..+|..... . ++||
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~-~-~~fD 84 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNN-------VGLDVVMTDLFKGV-R-GKFD 84 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcC-------CceEEEEccccccc-C-Cccc
Confidence 4456789999999999999999873 389999999999999999987643 25788888876643 2 5899
Q ss_pred EEEEccCCC---------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 146 AIHVGAAAP---------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~~~---------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+|+++.++. .+++++.++|+|||.+++..+..
T Consensus 85 ~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 85 VILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred EEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 999997653 13456789999999999876543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.8e-14 Score=110.65 Aligned_cols=106 Identities=25% Similarity=0.313 Sum_probs=86.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
++++.+|||+|||+|..+..++..+++.+.|+++|+++.+++.+++++...+. .++.+...|........+.||
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------LNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEecCCHHHhhhhccCCC
Confidence 67889999999999999999999876667999999999999999999988664 478899888765433335699
Q ss_pred EEEEccCCCC----------------------------chHHHHHhcCCCcEEEEEeCCC
Q 028002 146 AIHVGAAAPE----------------------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~~~~----------------------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.|+++.++.. +++.+.++|||||+|+++++..
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999876421 3346778999999999988653
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=111.80 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+. ...+..+|||+|||+|+.+..++..+++.++++++|+++.+++.|++++...+.. ++++++.+|+
T Consensus 56 ~g~~L~~l~-~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-----~~i~~~~gda 129 (234)
T PLN02781 56 EGLFLSMLV-KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-----HKINFIQSDA 129 (234)
T ss_pred HHHHHHHHH-HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEccH
Confidence 455555554 2555789999999999999999988766789999999999999999999988764 6899999998
Q ss_pred CCCCC------CCCCccEEEEccCC---CCchHHHHHhcCCCcEEEE
Q 028002 135 RKGWP------EFAPYDAIHVGAAA---PEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 135 ~~~~~------~~~~~D~V~~~~~~---~~~~~~~~~~Lk~gG~lv~ 172 (215)
.+... ..++||+|+++..- ..+.+.+.++|+|||.+++
T Consensus 130 ~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 130 LSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 76432 13689999999653 4556788999999999887
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=101.61 Aligned_cols=101 Identities=27% Similarity=0.302 Sum_probs=82.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCCccE
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPYDA 146 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~ 146 (215)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.+++++...+.. .+++++++|..... ...++||+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~D~ 73 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLD-----DRVEVIVGDARDLPEPLPDGKFDL 73 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTT-----TTEEEEESHHHHHHHTCTTT-EEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCC-----ceEEEEECchhhchhhccCceeEE
Confidence 4689999999999999999884 489999999999999999998886653 67999999987643 33489999
Q ss_pred EEEccCCCC--------------chHHHHHhcCCCcEEEEEeCC
Q 028002 147 IHVGAAAPE--------------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 147 V~~~~~~~~--------------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|++++++.. +.+.+.++|+|||.+++.+++
T Consensus 74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999998753 246788999999999997763
|
... |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.9e-14 Score=109.65 Aligned_cols=111 Identities=24% Similarity=0.270 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ...+.+|||+|||.|.+++.+++. .|..+++.+|.+..+++.+++++..++. ++..+...|..
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~-~p~~~vtmvDvn~~Av~~ar~Nl~~N~~------~~~~v~~s~~~ 218 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKK-SPQAKLTLVDVNARAVESARKNLAANGV------ENTEVWASNLY 218 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHh-CCCCeEEEEecCHHHHHHHHHhHHHcCC------CccEEEEeccc
Confidence 34455554 444559999999999999999999 4678999999999999999999998765 34467777776
Q ss_pred CCCCCCCCccEEEEccCCCC-----------chHHHHHhcCCCcEEEEEeCCC
Q 028002 136 KGWPEFAPYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~-----------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+... ++||.|+++++++. ++..+.++|++||.|.+.....
T Consensus 219 ~~v~--~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~ 269 (300)
T COG2813 219 EPVE--GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRH 269 (300)
T ss_pred cccc--ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCC
Confidence 6555 38999999999863 4456789999999999987643
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=110.61 Aligned_cols=98 Identities=21% Similarity=0.207 Sum_probs=79.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCC--CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQ--GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+..+|||+|||+|.++..+++.++.. .+++|+|+|+.+++.|+++. .++.+..+|........++||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCcee
Confidence 45789999999999999998875321 37999999999999987642 467888888876555557899
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEEeCCC
Q 028002 146 AIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+|++... +...+++.++|||||++++..++.
T Consensus 154 ~I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 154 AIIRIYA-PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EEEEecC-CCCHHHHHhhccCCCEEEEEeCCC
Confidence 9998765 456789999999999999988764
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=106.91 Aligned_cols=112 Identities=25% Similarity=0.398 Sum_probs=88.7
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. +.++.+|||+|||+|..+..+++.+++.++++++|+++.+++.++++.... ..++.+..+|..
T Consensus 9 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~ 79 (241)
T PRK08317 9 ARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDAD 79 (241)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEecccc
Confidence 44555554 778899999999999999999988766689999999999999998873221 157888888877
Q ss_pred CCCCCCCCccEEEEccCCCC------chHHHHHhcCCCcEEEEEeCC
Q 028002 136 KGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
......+.||+|++...+++ +++++.++|+|||.+++..+.
T Consensus 80 ~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 80 GLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred cCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 64444478999999877654 446889999999999987654
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=105.70 Aligned_cols=101 Identities=25% Similarity=0.351 Sum_probs=80.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++..+++. +. .+++++|+++.+++.+++++...+. ++.++.+|+...... ++||
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~-~~v~~vD~s~~~l~~a~~n~~~~~~-------~~~~~~~d~~~~~~~-~~fD 103 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GA-GSVTAVDISRRAVRSARLNALLAGV-------DVDVRRGDWARAVEF-RPFD 103 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHhCC-------eeEEEECchhhhccC-CCee
Confidence 567789999999999999998876 33 5899999999999999998876542 577888888664433 6899
Q ss_pred EEEEccCCCC---------------------------chHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAPE---------------------------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~---------------------------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+++.+... +++.+.++||+||.+++...+
T Consensus 104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999865321 335678999999999986544
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=105.87 Aligned_cols=114 Identities=22% Similarity=0.262 Sum_probs=85.0
Q ss_pred HHHHHHHHHH-HhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe
Q 028002 53 HMHATCLQLL-EENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 131 (215)
Q Consensus 53 ~~~~~~l~~l-~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~ 131 (215)
.....++..+ ...+.++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+.+++... .++.++.
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--------~nv~~i~ 126 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--------KNIIPIL 126 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--------CCcEEEE
Confidence 3344555433 11377899999999999999999999874 579999999999999877665432 4788888
Q ss_pred CCCCCCC---CCCCCccEEEEccCCCC----chHHHHHhcCCCcEEEEEeC
Q 028002 132 GDGRKGW---PEFAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 132 ~d~~~~~---~~~~~~D~V~~~~~~~~----~~~~~~~~Lk~gG~lv~~~~ 175 (215)
+|..... .-.++||+|+++...++ +++++.++|||||.++++++
T Consensus 127 ~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 127 ADARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CCCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 8876421 11256999998765432 35788899999999999644
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.6e-14 Score=109.32 Aligned_cols=113 Identities=24% Similarity=0.288 Sum_probs=90.4
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
-++..+. .+....+|||+|||+|.+++.++++. +..+++++|+++.+.+.|.++++.+.+. ++++++++|+..
T Consensus 34 iLL~~~~-~~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~-----~ri~v~~~Di~~ 106 (248)
T COG4123 34 ILLAAFA-PVPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLE-----ERIQVIEADIKE 106 (248)
T ss_pred HHHHhhc-ccccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcch-----hceeEehhhHHH
Confidence 3344443 24457899999999999999999985 4489999999999999999999987776 899999999987
Q ss_pred CCC--CCCCccEEEEccCCC------------------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 137 GWP--EFAPYDAIHVGAAAP------------------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 137 ~~~--~~~~~D~V~~~~~~~------------------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
... ...+||+|+|++++- .+.+.+.++||+||.+.+..+.
T Consensus 107 ~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 107 FLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred hhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 544 225799999999761 1224577899999999997654
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=110.34 Aligned_cols=135 Identities=21% Similarity=0.321 Sum_probs=96.1
Q ss_pred CCcCCCccccCCcccchhH---HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 028002 35 PYVDSPMAIGYNATISAPH---MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111 (215)
Q Consensus 35 ~y~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 111 (215)
.|....+..+.+..++.|. ++...+..+. ...+..+|||+|||+|.++..++... +..+++++|+|+.+++.|++
T Consensus 79 ~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~-~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~ 156 (284)
T TIGR00536 79 EFYGLEFFVNEHVLIPRPETEELVEKALASLI-SQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEE 156 (284)
T ss_pred eEcCeEEEECCCCcCCCCccHHHHHHHHHHhh-hcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 3334445555555555544 2333333322 12223689999999999999999885 55799999999999999999
Q ss_pred HHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC-------------------------------CchHHH
Q 028002 112 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-------------------------------EIPQAL 160 (215)
Q Consensus 112 ~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~-------------------------------~~~~~~ 160 (215)
++..++.. .++.++.+|+.+.... .+||+|+++++.. .+++.+
T Consensus 157 n~~~~~~~-----~~v~~~~~d~~~~~~~-~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a 230 (284)
T TIGR00536 157 NAEKNQLE-----HRVEFIQSNLFEPLAG-QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELA 230 (284)
T ss_pred HHHHcCCC-----CcEEEEECchhccCcC-CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHH
Confidence 98876542 3599999998765443 4899999986431 122456
Q ss_pred HHhcCCCcEEEEEeCCC
Q 028002 161 IDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 161 ~~~Lk~gG~lv~~~~~~ 177 (215)
.++|+|||++++.++..
T Consensus 231 ~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 231 PDYLKPNGFLVCEIGNW 247 (284)
T ss_pred HHhccCCCEEEEEECcc
Confidence 78999999999998864
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=117.30 Aligned_cols=106 Identities=21% Similarity=0.302 Sum_probs=87.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-CCCCCc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~ 144 (215)
+.++.+|||+|||+|..+..++..+++.++++++|+++.+++.+++++...+. .++.+..+|..... ...++|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhhhhhhhhccC
Confidence 67889999999999999999999876668999999999999999999988664 46889999986543 123679
Q ss_pred cEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 145 DAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|.|+++.++. .+++.+.+.|||||.|++++++.
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9999987662 12346788999999999998764
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.2e-14 Score=114.75 Aligned_cols=135 Identities=16% Similarity=0.057 Sum_probs=104.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~ 146 (215)
++.+|||+|||+|.++..+++.. .+|+++|.++.+++.|++++..++. .+++++.+|+.+... ..+.||+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~~~~~~~~~D~ 243 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQFATAQGEVPDL 243 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHHHHhcCCCCeE
Confidence 46899999999999999999863 6899999999999999999987664 479999999865432 2257999
Q ss_pred EEEccCCCCchHHH---HHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeecccCccccCC
Q 028002 147 IHVGAAAPEIPQAL---IDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRG 214 (215)
Q Consensus 147 V~~~~~~~~~~~~~---~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 214 (215)
|+++++-..+.+.+ ...++|++.++++++.... .+.+... ..|.......+.+.|.|++.|.+..
T Consensus 244 Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~-~rd~~~l--~~y~~~~~~~~DmFP~T~HvE~v~~ 311 (315)
T PRK03522 244 VLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTM-AKDLAHL--PGYRIERVQLFDMFPHTAHYEVLTL 311 (315)
T ss_pred EEECCCCCCccHHHHHHHHHcCCCeEEEEECCcccc-hhHHhhc--cCcEEEEEEEeccCCCCCeEEEEEE
Confidence 99998866554443 3445777777777665432 2333333 4799999999999999999987653
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.3e-14 Score=105.94 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=84.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---CCCCCc
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFAPY 144 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~ 144 (215)
...++||+|||+|.++..+++.. ++..++|+|+++.+++.|++++...+. .++.++++|+.... ...+.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHhhCCCCce
Confidence 45699999999999999999884 668999999999999999998877554 58999999986532 233589
Q ss_pred cEEEEccCCC--------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 145 DAIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~~--------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|.|+++.+.+ .+++.+.++|||||.|++.+.+.
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 9999886543 25678899999999999987664
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=118.26 Aligned_cols=109 Identities=24% Similarity=0.307 Sum_probs=86.8
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. +.++.+|||+|||+|..+..+++..+ .+++|+|+|+.+++.|+++..... .++.+..+|..
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~-------~~v~~~~~d~~ 324 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRK-------CSVEFEVADCT 324 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCC-------CceEEEEcCcc
Confidence 44555554 56788999999999999999988753 689999999999999988764321 47899999987
Q ss_pred CCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEeC
Q 028002 136 KGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~ 175 (215)
......++||+|++...+.++ ++++.++|||||.+++...
T Consensus 325 ~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 325 KKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred cCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 654444789999998887654 4678999999999998753
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-13 Score=115.51 Aligned_cols=105 Identities=25% Similarity=0.341 Sum_probs=86.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|..+..+++.++..++++++|+++.+++.+++++...+. .+++++.+|+....+. ++||
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~~~~-~~fD 320 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSFSPE-EQPD 320 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCcccccccC-CCCC
Confidence 66789999999999999999998875557999999999999999999988664 4789999998765433 6899
Q ss_pred EEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 146 AIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+|+++.++. .++..+.+.|||||+|++++++.
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999876541 13456788999999999998764
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=106.80 Aligned_cols=101 Identities=23% Similarity=0.369 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
.+.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...+. .++.++.+|+.+.... ++||+|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~-~~fD~V 158 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFEPLPG-GKFDLI 158 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhccCcC-CceeEE
Confidence 34699999999999999999885 457999999999999999999877554 4789999998765433 789999
Q ss_pred EEccCCC--------------------------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 148 HVGAAAP--------------------------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 148 ~~~~~~~--------------------------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
++++++. .+++.+.++|+|||.+++.++.
T Consensus 159 i~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 159 VSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred EECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 9987642 1235677899999999998754
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-13 Score=112.01 Aligned_cols=109 Identities=19% Similarity=0.221 Sum_probs=84.6
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. .....+|||+|||+|.++..+++. .+..+++++|+++.+++.+++++..++. ..++..+|..
T Consensus 186 ~lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~-~p~~~v~~vDis~~Al~~A~~nl~~n~l-------~~~~~~~D~~ 255 (342)
T PRK09489 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSAVLARH-SPKIRLTLSDVSAAALESSRATLAANGL-------EGEVFASNVF 255 (342)
T ss_pred HHHHHhcc--ccCCCeEEEeccCcCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC-------CCEEEEcccc
Confidence 34455454 233468999999999999999988 4657899999999999999999987653 3466777765
Q ss_pred CCCCCCCCccEEEEccCCCC-----------chHHHHHhcCCCcEEEEEeCC
Q 028002 136 KGWPEFAPYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~-----------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
... .++||+|+++++++. ++..+.++|+|||.|++..+.
T Consensus 256 ~~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 256 SDI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 533 368999999998864 335678999999999997765
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=118.55 Aligned_cols=137 Identities=12% Similarity=0.231 Sum_probs=99.9
Q ss_pred CCCCcCCCccccCCcccchhHHH---HHHHHHHHhc----------------------CCCCCEEEEEcCCccHHHHHHH
Q 028002 33 TPPYVDSPMAIGYNATISAPHMH---ATCLQLLEEN----------------------LKPGMHALDIGSGTGYLTACFA 87 (215)
Q Consensus 33 ~~~y~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~----------------------~~~~~~vLdiG~G~G~~~~~l~ 87 (215)
...|....+.++.+..++.|+.. ..+++.+... ..++.+|||+|||+|.++..++
T Consensus 78 ~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 78 VKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL 157 (506)
T ss_pred cCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence 55666677788888888888722 2223322100 1134689999999999999998
Q ss_pred HHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC------------
Q 028002 88 LMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE------------ 155 (215)
Q Consensus 88 ~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~------------ 155 (215)
+.. +..+++++|+|+.+++.|++++..++.. +++.++.+|+...... ++||+|+++++.-.
T Consensus 158 ~~~-p~~~v~avDis~~al~~A~~N~~~~~l~-----~~v~~~~~D~~~~~~~-~~fDlIvsNPPYi~~~~~~~l~~~v~ 230 (506)
T PRK01544 158 CEL-PNANVIATDISLDAIEVAKSNAIKYEVT-----DRIQIIHSNWFENIEK-QKFDFIVSNPPYISHSEKSEMAIETI 230 (506)
T ss_pred HHC-CCCeEEEEECCHHHHHHHHHHHHHcCCc-----cceeeeecchhhhCcC-CCccEEEECCCCCCchhhhhcCchhh
Confidence 875 5579999999999999999998876543 5788999997654433 68999999875310
Q ss_pred --------------------chHHHHHhcCCCcEEEEEeCC
Q 028002 156 --------------------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 156 --------------------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+++.+.++|+|||.+++.++.
T Consensus 231 ~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~ 271 (506)
T PRK01544 231 NYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF 271 (506)
T ss_pred ccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence 123456799999999997754
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=111.52 Aligned_cols=116 Identities=23% Similarity=0.250 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028002 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
.|.+...++.... .+++.+|||+|||+|.++..++.. + .+++|+|+++.++..+++++...+. .++++.
T Consensus 167 ~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~-~--~~v~g~Di~~~~~~~a~~nl~~~g~------~~i~~~ 235 (329)
T TIGR01177 167 DPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLM-G--AKVIGCDIDWKMVAGARINLEHYGI------EDFFVK 235 (329)
T ss_pred CHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHh-C--CeEEEEcCCHHHHHHHHHHHHHhCC------CCCeEE
Confidence 4445555555544 778899999999999998887665 3 7899999999999999999988765 347889
Q ss_pred eCCCCCCCCCCCCccEEEEccCC---------------CCchHHHHHhcCCCcEEEEEeCCC
Q 028002 131 VGDGRKGWPEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 131 ~~d~~~~~~~~~~~D~V~~~~~~---------------~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.+|+.......+.||+|++++++ ..+++.+.+.|+|||++++.+++.
T Consensus 236 ~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 236 RGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred ecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 99988754444789999998764 123456789999999999988764
|
This family is found exclusively in the Archaea. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=115.43 Aligned_cols=106 Identities=25% Similarity=0.324 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~ 141 (215)
..++.+|||+|||+|..+..+++.+++.++++++|+++.+++.+++++...+. .++.++.+|..... ...
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhccccccccc
Confidence 67789999999999999999999876668999999999999999999988765 47899999987643 223
Q ss_pred CCccEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 142 APYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 142 ~~~D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
++||.|+++.++. .+++.+.++|||||.|+++++..
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 6899999887541 23456789999999999887664
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-13 Score=109.19 Aligned_cols=95 Identities=22% Similarity=0.213 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
++.+|||+|||+|..+..+++. + .+|+++|.|+.+++.+++++...+. ++.+...|...... .++||+|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g--~~V~avD~s~~ai~~~~~~~~~~~l-------~v~~~~~D~~~~~~-~~~fD~I 188 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-G--FDVTAVDINQQSLENLQEIAEKENL-------NIRTGLYDINSASI-QEEYDFI 188 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEechhcccc-cCCccEE
Confidence 3459999999999999999986 3 7899999999999999988876442 57777777765433 3789999
Q ss_pred EEccCCCC--------chHHHHHhcCCCcEEEEE
Q 028002 148 HVGAAAPE--------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 148 ~~~~~~~~--------~~~~~~~~Lk~gG~lv~~ 173 (215)
++...+++ +++++.++|+|||++++.
T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99877643 346788999999997664
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-13 Score=112.15 Aligned_cols=103 Identities=26% Similarity=0.270 Sum_probs=81.7
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+++.+. +.++.+|||+|||+|.++..+++..+ .+|+++|+|+.+++.++++... ..+++...|...
T Consensus 158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~ 224 (383)
T PRK11705 158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRD 224 (383)
T ss_pred HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhh
Confidence 3444444 67889999999999999999998753 6899999999999999988742 247777787654
Q ss_pred CCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEeC
Q 028002 137 GWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~~ 175 (215)
. .++||.|++...++++ ++.+.++|||||.+++...
T Consensus 225 l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 225 L---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred c---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 3 2689999988766543 4678899999999999654
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-13 Score=110.09 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.++.+|||+|||+|..+..++.. ++ ..|+|+|+|+.++..++......+. ..++.+..+++..... .+.||+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~-----~~~i~~~~~d~e~lp~-~~~FD~ 192 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGN-----DQRAHLLPLGIEQLPA-LKAFDT 192 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCC-----CCCeEEEeCCHHHCCC-cCCcCE
Confidence 45789999999999999999987 45 4699999999988654332221111 1478999998876554 478999
Q ss_pred EEEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028002 147 IHVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 147 V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
|++...++| +++++.+.|+|||.+++.+
T Consensus 193 V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 193 VFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred EEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 999887765 3467899999999999863
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-13 Score=105.50 Aligned_cols=112 Identities=27% Similarity=0.318 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028002 54 MHATCLQLLEENL-KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 54 ~~~~~l~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
....+++.+.... .++.+|||+|||+|..+..+++.+ +..+++++|+++.+++.+++++. +++.++.+
T Consensus 19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~ 87 (240)
T TIGR02072 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----------ENVQFICG 87 (240)
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----------CCCeEEec
Confidence 3445555554221 345789999999999999999884 66789999999999998887543 36788888
Q ss_pred CCCCCCCCCCCccEEEEccCCCC------chHHHHHhcCCCcEEEEEeCC
Q 028002 133 DGRKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 133 d~~~~~~~~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|........++||+|++...+++ +++.+.++|+|||.+++..+.
T Consensus 88 d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 88 DAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred chhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 88776544478999999887654 446789999999999997654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-14 Score=108.80 Aligned_cols=101 Identities=23% Similarity=0.313 Sum_probs=75.7
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCc-ccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL-LKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
|++|||+|||+|.++..+++.. .+|+|+|.++.+++.|++.......... +. -++++...++.... +.||.|
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~-y~l~~~~~~~E~~~---~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIA-YRLEYEDTDVEGLT---GKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccc-eeeehhhcchhhcc---ccccee
Confidence 4889999999999999999984 8999999999999999887433221100 00 12445555554432 569999
Q ss_pred EEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028002 148 HVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 148 ~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|...++|+ .+.+.++|||||.|++++-+
T Consensus 163 vcsevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 163 VCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 999988876 35678999999999998644
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-14 Score=97.41 Aligned_cols=90 Identities=24% Similarity=0.409 Sum_probs=68.9
Q ss_pred EEEEcCCccHHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEE
Q 028002 72 ALDIGSGTGYLTACFALMV--GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 149 (215)
Q Consensus 72 vLdiG~G~G~~~~~l~~~~--~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~ 149 (215)
|||+|||+|..+..+++.+ ++..+++++|+|+.+++.++++....+ .++++.++|+.+.....++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-------~~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-------PKVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-------TTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-------CceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999999886 344799999999999999999887633 3789999999875444479999999
Q ss_pred ccC-CCCc--------hHHHHHhcCCCc
Q 028002 150 GAA-APEI--------PQALIDQLKPGG 168 (215)
Q Consensus 150 ~~~-~~~~--------~~~~~~~Lk~gG 168 (215)
... ++++ ++++.++|+|||
T Consensus 74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 544 5543 356889999998
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.7e-13 Score=108.33 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=75.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++..++.. ++ ..|+|+|+|+.++..++..-..... ..++.+...++.+.... ..||
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~~~~~~~~~-----~~~v~~~~~~ie~lp~~-~~FD 190 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFEAVRKLLDN-----DKRAILEPLGIEQLHEL-YAFD 190 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHHhcc-----CCCeEEEECCHHHCCCC-CCcC
Confidence 456789999999999999888876 44 5799999999998764322111111 14677777777654433 5899
Q ss_pred EEEEccCCCCc------hHHHHHhcCCCcEEEEEe
Q 028002 146 AIHVGAAAPEI------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~ 174 (215)
+|++...+.+. ++++.+.|+|||.|++.+
T Consensus 191 ~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 191 TVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999987653 467899999999999864
|
Known examples to date are restricted to the proteobacteria. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=101.57 Aligned_cols=106 Identities=22% Similarity=0.159 Sum_probs=79.3
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. .-+..++||+|||.|..+..+++++ -.|+++|.|+.+++.+.+.....++ .++....|..
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~l-------~i~~~~~Dl~ 87 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEGL-------DIRTRVADLN 87 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGC
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcCc-------eeEEEEecch
Confidence 44555554 4456799999999999999999984 7899999999999999887766553 5888899987
Q ss_pred CCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEEe
Q 028002 136 KGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~ 174 (215)
....+ +.||+|++...+.. +++.+...++|||++++.+
T Consensus 88 ~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 88 DFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp CBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 65554 78999998755533 3456788899999988843
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-13 Score=105.30 Aligned_cols=99 Identities=21% Similarity=0.206 Sum_probs=81.2
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEE
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 149 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~ 149 (215)
.+|||+|||+|..+..+++.+ +..+++++|+|+.+++.+++++...+.. .++.+...|....... ++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~-----~~i~~~~~d~~~~~~~-~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQ-----GRIRIFYRDSAKDPFP-DTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCC-----cceEEEecccccCCCC-CCCCEeeh
Confidence 379999999999999999885 4478999999999999999998776554 5789999988654333 68999998
Q ss_pred ccCCCC------chHHHHHhcCCCcEEEEEeC
Q 028002 150 GAAAPE------IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 150 ~~~~~~------~~~~~~~~Lk~gG~lv~~~~ 175 (215)
...+++ +++++.++|+|||.+++...
T Consensus 74 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 74 FEVIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 776654 44688999999999998653
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.6e-13 Score=113.10 Aligned_cols=106 Identities=24% Similarity=0.253 Sum_probs=86.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~ 144 (215)
..++.+|||+|||+|..+..+++.+++.++++++|+++.+++.+++++...+. .+++++.+|+..... -.+.|
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCcccccchhcccC
Confidence 67788999999999999999999875668999999999999999999988665 468999999876432 11689
Q ss_pred cEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 145 DAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|+|++++++. .+++.+.++|||||.|+++++..
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 9999987642 13456788999999999877653
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.6e-13 Score=103.85 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=91.3
Q ss_pred CCCCcCCCccccCCcccchhH---HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHH
Q 028002 33 TPPYVDSPMAIGYNATISAPH---MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSS 109 (215)
Q Consensus 33 ~~~y~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a 109 (215)
...|....+..+.+..+..+. +...++..+. ...+..+|||+|||+|.++..+++.. +..+++++|+|+.+++.+
T Consensus 49 ~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~-~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A 126 (251)
T TIGR03704 49 WAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALAR-PRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCA 126 (251)
T ss_pred cCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhc-ccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 344444455555555543332 2333333222 11224589999999999999999875 446899999999999999
Q ss_pred HHHHHhhcccCcccCCCeEEEeCCCCCCCCC--CCCccEEEEccCCC--------------------------------C
Q 028002 110 IQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAP--------------------------------E 155 (215)
Q Consensus 110 ~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~V~~~~~~~--------------------------------~ 155 (215)
++++..+ ++++..+|+.+.... .+.||+|++++++. .
T Consensus 127 ~~N~~~~---------~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~ 197 (251)
T TIGR03704 127 RRNLADA---------GGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRR 197 (251)
T ss_pred HHHHHHc---------CCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHH
Confidence 9998763 246788887654321 25799999998652 1
Q ss_pred chHHHHHhcCCCcEEEEEeCCC
Q 028002 156 IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 156 ~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+.+.+.++|+|||++++.+...
T Consensus 198 i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 198 VAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred HHHHHHHhcCCCCEEEEEECcc
Confidence 2234568999999999987653
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=102.17 Aligned_cols=113 Identities=25% Similarity=0.416 Sum_probs=87.7
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+. ..++.+|||+|||+|..+..+++.++...+++++|+++.+++.+++++...+.. .++.+..+|.
T Consensus 40 ~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-----~~~~~~~~d~ 112 (239)
T PRK00216 40 RRKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS-----GNVEFVQGDA 112 (239)
T ss_pred HHHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc-----cCeEEEeccc
Confidence 344555554 456789999999999999999988643589999999999999999987653322 5788999988
Q ss_pred CCCCCCCCCccEEEEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028002 135 RKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
.......+.||+|++...+++ +++.+.+.|+|||.+++..
T Consensus 113 ~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 113 EALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 765544478999998776543 4467889999999998753
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.2e-13 Score=101.96 Aligned_cols=112 Identities=22% Similarity=0.371 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GD 133 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d 133 (215)
...++..+. ...+..+|||+|++.|+.++.++..+..+++++++|.++++.+.|++++...++. +++.++. +|
T Consensus 47 ~g~~L~~L~-~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-----~~i~~~~~gd 120 (219)
T COG4122 47 TGALLRLLA-RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-----DRIELLLGGD 120 (219)
T ss_pred HHHHHHHHH-HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-----ceEEEEecCc
Confidence 455555554 2567789999999999999999999865789999999999999999999998876 5688888 47
Q ss_pred CCCCCCC--CCCccEEEEccCCCC---chHHHHHhcCCCcEEEE
Q 028002 134 GRKGWPE--FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 134 ~~~~~~~--~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~ 172 (215)
..+.... .++||+||.+..-.. +++.+.++|+|||.+++
T Consensus 121 al~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 121 ALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred HHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEE
Confidence 7654432 489999999987654 55678899999999998
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.5e-13 Score=105.66 Aligned_cols=131 Identities=22% Similarity=0.336 Sum_probs=92.9
Q ss_pred CcCCCccccCCcccchhH---HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 028002 36 YVDSPMAIGYNATISAPH---MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 36 y~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 112 (215)
|.+..+..+.+..++.|. +...++..+. ..++.+|||+|||+|..+..++... +..+++++|+++.+++.++++
T Consensus 75 f~~~~~~~~~~~lipr~~te~l~~~~~~~~~--~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n 151 (275)
T PRK09328 75 FWGLDFKVSPGVLIPRPETEELVEWALEALL--LKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRN 151 (275)
T ss_pred EcCcEEEECCCceeCCCCcHHHHHHHHHhcc--ccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence 444445555555544443 2333332222 4567899999999999999999885 558999999999999999998
Q ss_pred HHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC--------------------------------chHHH
Q 028002 113 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE--------------------------------IPQAL 160 (215)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~--------------------------------~~~~~ 160 (215)
+. ... ..++.++.+|+..... .++||+|+++++... +.+.+
T Consensus 152 ~~-~~~-----~~~i~~~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~ 224 (275)
T PRK09328 152 AK-HGL-----GARVEFLQGDWFEPLP-GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQA 224 (275)
T ss_pred HH-hCC-----CCcEEEEEccccCcCC-CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHH
Confidence 87 221 1578999999866544 368999999875421 12345
Q ss_pred HHhcCCCcEEEEEeCC
Q 028002 161 IDQLKPGGRMVIPVGN 176 (215)
Q Consensus 161 ~~~Lk~gG~lv~~~~~ 176 (215)
.++|+|||++++.++.
T Consensus 225 ~~~Lk~gG~l~~e~g~ 240 (275)
T PRK09328 225 PRYLKPGGWLLLEIGY 240 (275)
T ss_pred HHhcccCCEEEEEECc
Confidence 5899999999998754
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.5e-13 Score=105.48 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=81.0
Q ss_pred CCCCEEEEEcCCccHH-HHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh-hcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 67 KPGMHALDIGSGTGYL-TACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-SAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~-~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.+..+|+|+|||.|.+ ++.+++...++++++++|.++.+++.|++.+.. .++. ++++|..+|+.+.....+.|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-----~rV~F~~~Da~~~~~~l~~F 196 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS-----KRMFFHTADVMDVTESLKEY 196 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc-----CCcEEEECchhhcccccCCc
Confidence 3668999999997754 444454445778999999999999999999854 4443 67999999998754444789
Q ss_pred cEEEEccCCCC--------chHHHHHhcCCCcEEEEEeCC
Q 028002 145 DAIHVGAAAPE--------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+|++. .+.. +++.+.+.|+|||.+++-...
T Consensus 197 DlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~ 235 (296)
T PLN03075 197 DVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAH 235 (296)
T ss_pred CEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEeccc
Confidence 999999 4432 446789999999999996543
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-12 Score=97.59 Aligned_cols=111 Identities=22% Similarity=0.273 Sum_probs=85.4
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+++.+. ..++.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++...+.. ..++.+..+|..+
T Consensus 14 ~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~-~--~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~ 84 (188)
T PRK14968 14 LLAENAV--DKKGDRVLEVGTGSGIVAIVAAKN-G--KKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLFE 84 (188)
T ss_pred HHHHhhh--ccCCCEEEEEccccCHHHHHHHhh-c--ceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEeccccc
Confidence 3444444 466789999999999999999987 3 79999999999999999988765542 0127888888776
Q ss_pred CCCCCCCccEEEEccCCCC---------------------------chHHHHHhcCCCcEEEEEeCCC
Q 028002 137 GWPEFAPYDAIHVGAAAPE---------------------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~---------------------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.... ..||+|+++.++.. +++++.++|+|||.+++..+..
T Consensus 85 ~~~~-~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 85 PFRG-DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred cccc-cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 5544 48999998865422 3567889999999998876653
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-13 Score=106.50 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=91.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+. ...+..+|||+||++|+.++.++..++++++++++|.++...+.|+++++..+.. ++++++.+|+
T Consensus 106 ~g~lL~~L~-~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-----~~I~li~GdA 179 (278)
T PLN02476 106 QAQLLAMLV-QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-----HKVNVKHGLA 179 (278)
T ss_pred HHHHHHHHH-HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCH
Confidence 445555554 2455789999999999999999998776789999999999999999999998765 6899999998
Q ss_pred CCCCCC------CCCccEEEEccCCCC---chHHHHHhcCCCcEEEE
Q 028002 135 RKGWPE------FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 135 ~~~~~~------~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~ 172 (215)
.+.++. .++||+||.+..-.. +.+.+.++|+|||.+++
T Consensus 180 ~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 180 AESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred HHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 764321 258999999987644 44678899999999987
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-13 Score=105.77 Aligned_cols=133 Identities=20% Similarity=0.258 Sum_probs=95.6
Q ss_pred CCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCC-EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 028002 34 PPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 34 ~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 112 (215)
..|....+....+..++.|... .+++.+........ +|||+|||||.+++.+++.. +..+|+++|+|+.+++.|++|
T Consensus 76 ~~f~gl~~~v~~~vliPr~dTe-~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 76 AEFGGLRFKVDEGVLIPRPDTE-LLVEAALALLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALAREN 153 (280)
T ss_pred CeecceeeeeCCCceecCCchH-HHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHH
Confidence 3444555556667777777733 33333111122223 79999999999999999985 657999999999999999999
Q ss_pred HHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC-------------------------------CchHHHH
Q 028002 113 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-------------------------------EIPQALI 161 (215)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~-------------------------------~~~~~~~ 161 (215)
+..+++ .++.++.+|+..... ++||+|+++++.- .+...+.
T Consensus 154 a~~~~l------~~~~~~~~dlf~~~~--~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~ 225 (280)
T COG2890 154 AERNGL------VRVLVVQSDLFEPLR--GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAP 225 (280)
T ss_pred HHHcCC------ccEEEEeeecccccC--CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhH
Confidence 988764 356666667666544 4899999998751 1113467
Q ss_pred HhcCCCcEEEEEeCC
Q 028002 162 DQLKPGGRMVIPVGN 176 (215)
Q Consensus 162 ~~Lk~gG~lv~~~~~ 176 (215)
+.|+|||.+++.++.
T Consensus 226 ~~l~~~g~l~le~g~ 240 (280)
T COG2890 226 DILKPGGVLILEIGL 240 (280)
T ss_pred HHcCCCcEEEEEECC
Confidence 899999999998874
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.1e-13 Score=108.53 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.++.+|||+|||+|..+..+++..+ ..+++++|.++.+++.++++... .++.++.+|..+.....++||+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e~lp~~~~sFDv 181 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAEDLPFPTDYADR 181 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHHhCCCCCCceeE
Confidence 4678999999999999999988763 37899999999999999886532 4678899998765444478999
Q ss_pred EEEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028002 147 IHVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 147 V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
|++...+++ .++++.++|+|||.+++..
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 999887654 4468899999999998753
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-12 Score=111.35 Aligned_cols=114 Identities=21% Similarity=0.227 Sum_probs=85.6
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+...+. ..++.+|||+|||+|..+..+++.++ .++++++|+++.+++.+++++...+.. ..+.+..+|..
T Consensus 228 ~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~-----~~v~~~~~d~~ 299 (426)
T TIGR00563 228 QWVATWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT-----IKAETKDGDGR 299 (426)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeccccc
Confidence 34444554 67889999999999999999999875 589999999999999999999876542 23344556654
Q ss_pred CCCC--CCCCccEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 136 KGWP--EFAPYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 136 ~~~~--~~~~~D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.... ..++||.|+++.++. .+++.+.++|||||.|++++++.
T Consensus 300 ~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 300 GPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 3222 336899999876432 13356788999999999988764
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.3e-13 Score=102.28 Aligned_cols=104 Identities=23% Similarity=0.252 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc------CcccCCCeEEEeCCCCCCCCC
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA------PLLKEGSLSVHVGDGRKGWPE 140 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------~~~~~~~v~~~~~d~~~~~~~ 140 (215)
.++.+|||+|||.|..+..++++ | .+|+|+|+|+.+++.+.+........ ......++++.++|+.+....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-G--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-C--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 56789999999999999999988 4 78999999999999764321110000 001125789999999775432
Q ss_pred -CCCccEEEEccCCCCch--------HHHHHhcCCCcEEEEE
Q 028002 141 -FAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 -~~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~ 173 (215)
.+.||.|+....+.+++ +.+.++|||||.+++.
T Consensus 110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 35799999887765554 5688999999975553
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=105.56 Aligned_cols=113 Identities=24% Similarity=0.357 Sum_probs=90.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+.. ..+..+||||||++|+.++.+++.++++++++++|.++...+.|++++...+.. ++++++.+|+
T Consensus 33 ~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-----~~I~~~~gda 106 (205)
T PF01596_consen 33 TGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-----DRIEVIEGDA 106 (205)
T ss_dssp HHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-----GGEEEEES-H
T ss_pred HHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-----CcEEEEEecc
Confidence 4556666653 344579999999999999999998877799999999999999999999987765 6899999998
Q ss_pred CCCCC----C--CCCccEEEEccCCCCch---HHHHHhcCCCcEEEEE
Q 028002 135 RKGWP----E--FAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVIP 173 (215)
Q Consensus 135 ~~~~~----~--~~~~D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~~ 173 (215)
.+..+ . .++||+||.+..-.... +.+.++|++||.+++.
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEc
Confidence 75322 1 25899999999876544 5678999999999983
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-13 Score=101.48 Aligned_cols=94 Identities=23% Similarity=0.350 Sum_probs=73.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
-.++||+|||.|.++..|+.+. .+++++|+++.+++.|++++... .++++.++++...++. +.||+|+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~--------~~V~~~~~dvp~~~P~-~~FDLIV 111 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL--------PHVEWIQADVPEFWPE-GRFDLIV 111 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---S-S-EEEEE
T ss_pred cceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC--------CCeEEEECcCCCCCCC-CCeeEEE
Confidence 3689999999999999999997 79999999999999999998653 5899999999888776 8999999
Q ss_pred EccCCCCc---------hHHHHHhcCCCcEEEEEe
Q 028002 149 VGAAAPEI---------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 149 ~~~~~~~~---------~~~~~~~Lk~gG~lv~~~ 174 (215)
+...+..+ .+.+...|+|||.|++-+
T Consensus 112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 98876433 345678899999999954
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=100.23 Aligned_cols=108 Identities=20% Similarity=0.225 Sum_probs=88.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCC-----CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQ-----GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~-----~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 140 (215)
..+++++||++||||.++..+.+..+.. ++|+.+|+++.|+..++++....+.. ....+.++.+|+.+.+.+
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~---~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK---ASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC---cCCceEEEeCCcccCCCC
Confidence 5667999999999999999999887442 79999999999999999988664432 223589999999988887
Q ss_pred CCCccEEEEccCCCC------chHHHHHhcCCCcEEEEEeCC
Q 028002 141 FAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
++.||.......+.. .++++.++|||||++.+-..+
T Consensus 175 d~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred CCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 789999988776643 446889999999999875443
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.5e-13 Score=96.01 Aligned_cols=103 Identities=21% Similarity=0.193 Sum_probs=81.3
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEE
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 149 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~ 149 (215)
.+|||+|||+|.+...+++. +..++++|+|.|+.+++.|+...+..+.. +.++|.+.|+.+.-...+.||+|+.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~-----n~I~f~q~DI~~~~~~~~qfdlvlD 142 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFS-----NEIRFQQLDITDPDFLSGQFDLVLD 142 (227)
T ss_pred cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCC-----cceeEEEeeccCCcccccceeEEee
Confidence 39999999999999999988 55578999999999999998777766654 4599999998874333377888854
Q ss_pred ccCCC--------------CchHHHHHhcCCCcEEEEEeCCCc
Q 028002 150 GAAAP--------------EIPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 150 ~~~~~--------------~~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
-+.+. -+...+.++|+|||+++++.+|..
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 44331 234678899999999999988854
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=110.10 Aligned_cols=110 Identities=27% Similarity=0.350 Sum_probs=86.2
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+...+. ..++.+|||+|||+|..+..+++.. +.++++++|.++.+++.+++++...+. ++.++.+|+..
T Consensus 235 ~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~ 304 (427)
T PRK10901 235 LAATLLA--PQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARD 304 (427)
T ss_pred HHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCccc
Confidence 3344444 6788999999999999999999985 337999999999999999999987653 36788888875
Q ss_pred CC--CCCCCccEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 137 GW--PEFAPYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 137 ~~--~~~~~~D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.. ...++||.|++++++. .+++.+.++|||||.++++++.
T Consensus 305 ~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 305 PAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred chhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 32 2236799999887642 1345677899999999998864
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=108.03 Aligned_cols=111 Identities=20% Similarity=0.231 Sum_probs=90.3
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+++.+. ...+..+||||||+|..+..+|+.. |+..++|+|+++.+++.+.+++...+. .++.++.+|+..
T Consensus 113 ~~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~~ 183 (390)
T PRK14121 113 NFLDFIS--KNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDARL 183 (390)
T ss_pred HHHHHhc--CCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHH
Confidence 4455554 4456799999999999999999985 778999999999999999999887654 589999999854
Q ss_pred C--CCCCCCccEEEEccCCC------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 137 G--WPEFAPYDAIHVGAAAP------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 137 ~--~~~~~~~D~V~~~~~~~------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
. ....+++|.|++..+.+ .+++.+.++|+|||.+.+.+..
T Consensus 184 ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 184 LLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred hhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 2 22347899999887764 3567889999999999997755
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-13 Score=113.23 Aligned_cols=150 Identities=17% Similarity=0.107 Sum_probs=110.3
Q ss_pred hhHHHHHHHHHHHhc--CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE
Q 028002 51 APHMHATCLQLLEEN--LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
.+.....+.+.+... ..++.+|||+|||+|.+++.++... .+++++|+++.+++.|++++..++. .+++
T Consensus 214 n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~------~~~~ 284 (374)
T TIGR02085 214 NPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGL------DNLS 284 (374)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCC------CcEE
Confidence 333444444433221 2356799999999999999999763 6899999999999999999987654 4899
Q ss_pred EEeCCCCCCCCC-CCCccEEEEccCCCCchHHH---HHhcCCCcEEEEEeCCCc--eeEEEEEEcCCCceEEEeeceEEE
Q 028002 129 VHVGDGRKGWPE-FAPYDAIHVGAAAPEIPQAL---IDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRY 202 (215)
Q Consensus 129 ~~~~d~~~~~~~-~~~~D~V~~~~~~~~~~~~~---~~~Lk~gG~lv~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 202 (215)
+..+|+.+.... ...||+|+++++...+.+.+ ...++|++.++++++... ..+..+ +.|.......+.+
T Consensus 285 ~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~~~~p~~ivyvsc~p~TlaRDl~~L-----~gy~l~~~~~~Dm 359 (374)
T TIGR02085 285 FAALDSAKFATAQMSAPELVLVNPPRRGIGKELCDYLSQMAPKFILYSSCNAQTMAKDIAEL-----SGYQIERVQLFDM 359 (374)
T ss_pred EEECCHHHHHHhcCCCCCEEEECCCCCCCcHHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHh-----cCceEEEEEEecc
Confidence 999998654321 24699999999876554433 334789999999886542 122222 4699999999999
Q ss_pred eecccCccccCC
Q 028002 203 VPLTSRDAQLRG 214 (215)
Q Consensus 203 ~p~~~~~~~~~~ 214 (215)
.|.|++.|.|..
T Consensus 360 FPqT~HvE~v~l 371 (374)
T TIGR02085 360 FPHTSHYEVLTL 371 (374)
T ss_pred CCCCCcEEEEEE
Confidence 999999987753
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-14 Score=97.37 Aligned_cols=91 Identities=22% Similarity=0.344 Sum_probs=58.4
Q ss_pred EEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCCCccEEEEc
Q 028002 73 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPYDAIHVG 150 (215)
Q Consensus 73 LdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~D~V~~~ 150 (215)
||+|||+|.++..++... +..+++++|+|+.+++.+++++..... .+......+..+... ..++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGN------DNFERLRFDVLDLFDYDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS---CCC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC------cceeEEEeecCChhhcccccccceehhh
Confidence 799999999999999985 558999999999999999888877543 233344433333221 11589999999
Q ss_pred cCCCCch------HHHHHhcCCCcEE
Q 028002 151 AAAPEIP------QALIDQLKPGGRM 170 (215)
Q Consensus 151 ~~~~~~~------~~~~~~Lk~gG~l 170 (215)
..++++. +.+.++|+|||+|
T Consensus 74 ~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 9998763 5678999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-13 Score=114.53 Aligned_cols=135 Identities=19% Similarity=0.155 Sum_probs=101.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----CC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~ 141 (215)
..++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++..++. .+++++.+|+.+..+ ..
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~~~~l~~~~~~~ 360 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTLETVLPKQPWAG 360 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCHHHHHHHHHhcC
Confidence 4567899999999999999999874 6899999999999999999987664 589999999865322 12
Q ss_pred CCccEEEEccCCCCchHHH---HHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeecccCcc
Q 028002 142 APYDAIHVGAAAPEIPQAL---IDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 210 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~---~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 210 (215)
+.||+|+++++-..+...+ ...++|++.++++++... ....+....+..|.......+.+.|.|++.|
T Consensus 361 ~~~D~vi~dPPr~G~~~~~l~~l~~l~~~~ivyvsc~p~t-lard~~~l~~~gy~~~~~~~~DmFP~T~HvE 431 (431)
T TIGR00479 361 QIPDVLLLDPPRKGCAAEVLRTIIELKPERIVYVSCNPAT-LARDLEFLCKEGYGITWVQPVDMFPHTAHVE 431 (431)
T ss_pred CCCCEEEECcCCCCCCHHHHHHHHhcCCCEEEEEcCCHHH-HHHHHHHHHHCCeeEEEEEEeccCCCCCCCC
Confidence 5799999998764433222 234789998888765322 2222223335568888999999999998764
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=102.72 Aligned_cols=101 Identities=24% Similarity=0.325 Sum_probs=77.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---CCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~ 142 (215)
+.++++|||+|||+|..+..+++.+++.++|+++|+++.+.+...+..... .++.++.+|+.... ...+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--------~NI~~I~~Da~~p~~y~~~~~ 201 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--------PNIVPIIEDARYPQKYRMLVP 201 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------CCCEEEECCccChhhhhcccC
Confidence 688999999999999999999999887789999999987665444433221 47888899876421 1225
Q ss_pred CccEEEEccCCCC----chHHHHHhcCCCcEEEEEe
Q 028002 143 PYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 143 ~~D~V~~~~~~~~----~~~~~~~~Lk~gG~lv~~~ 174 (215)
.+|+|+++...++ +..++.++|||||.|++.+
T Consensus 202 ~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 202 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEE
Confidence 7999999886544 2346788999999999954
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=7e-13 Score=98.46 Aligned_cols=97 Identities=27% Similarity=0.395 Sum_probs=80.8
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCC
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFA 142 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~ 142 (215)
.++++.+|||+|||.|.+...+.+.- +.+.+|+|++++.+..|.+ ..+.++++|+...+. +++
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~-------------rGv~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVA-------------RGVSVIQGDLDEGLADFPDQ 74 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHH-------------cCCCEEECCHHHhHhhCCCC
Confidence 37789999999999999999988753 3789999999999888765 367899999886542 458
Q ss_pred CccEEEEccCCCCch---HHHHHhcCCCcEEEEEeCC
Q 028002 143 PYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~~~~~ 176 (215)
+||.|+.+..++++. .-+.++|+-|...++++||
T Consensus 75 sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPN 111 (193)
T PF07021_consen 75 SFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPN 111 (193)
T ss_pred CccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecC
Confidence 999999999987765 3467788999999999998
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-13 Score=98.22 Aligned_cols=103 Identities=31% Similarity=0.421 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
...+..+.....++.+|||+|||+|.++..+++. + .+++++|+++.+++. . +......+..
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~~~g~D~~~~~~~~------~----------~~~~~~~~~~ 70 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-G--FEVTGVDISPQMIEK------R----------NVVFDNFDAQ 70 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-T--SEEEEEESSHHHHHH------T----------TSEEEEEECH
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-C--CEEEEEECCHHHHhh------h----------hhhhhhhhhh
Confidence 4445555433577899999999999999999776 3 599999999999887 1 1222222222
Q ss_pred CCCCCCCCccEEEEccCCCCch------HHHHHhcCCCcEEEEEeCCC
Q 028002 136 KGWPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~~------~~~~~~Lk~gG~lv~~~~~~ 177 (215)
......++||+|++...++++. +.+.++|||||++++..++.
T Consensus 71 ~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 71 DPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp THHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 2222337999999999998765 57889999999999988764
|
... |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=111.87 Aligned_cols=101 Identities=23% Similarity=0.267 Sum_probs=80.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 143 (215)
..++.+|||+|||+|..+..+++.. +..+++|+|+|+.+++.|+++....+ .++.++++|..+.. ...++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g-------~~ie~I~gDa~dLp~~fedeS 487 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG-------RSWNVIKGDAINLSSSFEKES 487 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC-------CCeEEEEcchHhCccccCCCC
Confidence 3467899999999999999998875 56899999999999999988765432 36788888876532 33478
Q ss_pred ccEEEEccCCCC-------------------chHHHHHhcCCCcEEEEEe
Q 028002 144 YDAIHVGAAAPE-------------------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 144 ~D~V~~~~~~~~-------------------~~~~~~~~Lk~gG~lv~~~ 174 (215)
||+|+++..+++ +++++.++|||||.+++.-
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 999998866543 2356789999999999964
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.5e-12 Score=95.87 Aligned_cols=121 Identities=15% Similarity=0.069 Sum_probs=87.8
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028002 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
..+...+...++..+. ...++.+|||+|||+|.+++.++.. +. .+|+++|.++.+++.++++++.++. .++
T Consensus 34 Rp~~d~v~e~l~~~l~-~~~~~~~vLDl~~GsG~l~l~~lsr-~a-~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v 104 (199)
T PRK10909 34 RPTTDRVRETLFNWLA-PVIVDARCLDCFAGSGALGLEALSR-YA-AGATLLEMDRAVAQQLIKNLATLKA------GNA 104 (199)
T ss_pred CcCCHHHHHHHHHHHh-hhcCCCEEEEcCCCccHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHHHHHhCC------CcE
Confidence 3344444455666664 2345689999999999999876555 33 6999999999999999999988664 478
Q ss_pred EEEeCCCCCCCC-CCCCccEEEEccCCC-CchHHHHH------hcCCCcEEEEEeCCC
Q 028002 128 SVHVGDGRKGWP-EFAPYDAIHVGAAAP-EIPQALID------QLKPGGRMVIPVGNI 177 (215)
Q Consensus 128 ~~~~~d~~~~~~-~~~~~D~V~~~~~~~-~~~~~~~~------~Lk~gG~lv~~~~~~ 177 (215)
.++.+|+..... ..++||+|++++++. .+.+.+.+ +|+|+|.+++.+...
T Consensus 105 ~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 105 RVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred EEEEchHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 999999865442 224799999999953 33433322 268899999987653
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.2e-12 Score=100.97 Aligned_cols=111 Identities=13% Similarity=0.122 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCCccH----HHHHHHHHhCC----CCeEEEEecChHHHHHHHHHHHhh----cccC---------c----
Q 028002 67 KPGMHALDIGSGTGY----LTACFALMVGP----QGRAVGVEHIPELVVSSIQNIEKS----AAAP---------L---- 121 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~----~~~~l~~~~~~----~~~v~~~D~s~~~~~~a~~~~~~~----~~~~---------~---- 121 (215)
.++.+|||+|||||. +++.+++.++. +.+|+|+|+|+.+++.|++.+... +... .
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 45555655421 368999999999999998754210 0000 0
Q ss_pred ----ccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEEeCCC
Q 028002 122 ----LKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 122 ----~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
--..++.+.+.|..+..+..++||+|+|...+.+ +++++.+.|+|||+|++-....
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 0013688999999876654589999999887654 3457889999999999965443
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.8e-12 Score=96.80 Aligned_cols=110 Identities=24% Similarity=0.328 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+. ..++.+|||+|||+|..+..+++..+...+++++|+++.+++.+++++. . . .++.+..+|.
T Consensus 28 ~~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~--~-----~~i~~~~~d~ 97 (223)
T TIGR01934 28 RRRAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L--P-----LNIEFIQADA 97 (223)
T ss_pred HHHHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c--C-----CCceEEecch
Confidence 344455554 4578899999999999999999886322689999999999999988764 1 1 4788888888
Q ss_pred CCCCCCCCCccEEEEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028002 135 RKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
.+.....++||+|++...+++ +++.+.+.|+|||++++..
T Consensus 98 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 98 EALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred hcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 765444468999988766543 4467889999999999754
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-12 Score=100.52 Aligned_cols=104 Identities=21% Similarity=0.231 Sum_probs=81.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~ 144 (215)
..+..+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++..... .++++++.+|+.+.... .++|
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~~l~~~~~~y 137 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAEYIAVHRHST 137 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHHHHHhCCCCC
Confidence 3445789999999999999999885 668999999999999999998754322 26899999998654322 2589
Q ss_pred cEEEEccCC----------CCchHHHHHhcCCCcEEEEEeC
Q 028002 145 DAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 145 D~V~~~~~~----------~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
|+|+++..- ..+.+.+.+.|+|||++++...
T Consensus 138 D~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 138 DVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 999987421 2355788899999999999653
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=100.47 Aligned_cols=112 Identities=23% Similarity=0.295 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+.. ..+..+|||+|+++|+.++.++..++++++++++|.++...+.|++++...+.. ++++++.+++
T Consensus 67 ~g~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-----~~I~~~~G~a 140 (247)
T PLN02589 67 EGQFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-----HKIDFREGPA 140 (247)
T ss_pred HHHHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-----CceEEEeccH
Confidence 4555555542 444579999999999999999988777789999999999999999999988765 7999999998
Q ss_pred CCCCCC-------CCCccEEEEccCCCCch---HHHHHhcCCCcEEEE
Q 028002 135 RKGWPE-------FAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVI 172 (215)
Q Consensus 135 ~~~~~~-------~~~~D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~ 172 (215)
.+.++. .++||+||.+..-..++ +.+.++|++||.+++
T Consensus 141 ~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 141 LPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 764331 26899999998765444 567899999999887
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.7e-12 Score=97.27 Aligned_cols=96 Identities=13% Similarity=0.064 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+.....++.+|||+|||||..+..+++.. ..+++|+|+|+.|++.|++. ..++++|+.
T Consensus 39 ~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~--------------~~~~~~d~~ 102 (226)
T PRK05785 39 AELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA--------------DDKVVGSFE 102 (226)
T ss_pred HHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc--------------cceEEechh
Confidence 34444443223457899999999999999998874 26999999999999998753 124567776
Q ss_pred CCCCCCCCccEEEEccCCCCc------hHHHHHhcCCC
Q 028002 136 KGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPG 167 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~g 167 (215)
.....+++||+|++...++++ ++++.++|||.
T Consensus 103 ~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 103 ALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 655555899999999888653 36789999995
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.4e-12 Score=97.46 Aligned_cols=103 Identities=22% Similarity=0.289 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
.++.+.+. .++++.+|||+|||+|..+..+++..++.++|+++|+++. .. ..++.++++|+.
T Consensus 40 ~~~~~~~~-~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~------~~~v~~i~~D~~ 101 (209)
T PRK11188 40 DEIQQSDK-LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DP------IVGVDFLQGDFR 101 (209)
T ss_pred HHHHHHhc-cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cC------CCCcEEEecCCC
Confidence 34444443 2577889999999999999999998766679999999881 01 146889999987
Q ss_pred CCC--------CCCCCccEEEEccCCC-----------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 136 KGW--------PEFAPYDAIHVGAAAP-----------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~--------~~~~~~D~V~~~~~~~-----------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
... ...++||+|+++.... .+++.+.++|+|||.+++.+..
T Consensus 102 ~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 102 DELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred ChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 742 2337899999876431 2346788999999999996543
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-11 Score=96.12 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=101.8
Q ss_pred CCCCcCCCccccCCcccchhH---HHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHH
Q 028002 33 TPPYVDSPMAIGYNATISAPH---MHATCLQLLEEN-LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 108 (215)
Q Consensus 33 ~~~y~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~ 108 (215)
+..|.+-.+....|..|+.|+ .+..+++.+... ..++..+||+|||+|.+++.++..++ .+.++++|.|+.++..
T Consensus 109 ~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~L 187 (328)
T KOG2904|consen 109 SQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKL 187 (328)
T ss_pred cCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHH
Confidence 567888888888888888777 334444444321 12345899999999999999999885 6899999999999999
Q ss_pred HHHHHHhhcccCcccCCCeEEEeCCC----CCCC-CCCCCccEEEEccCCC-----------------------------
Q 028002 109 SIQNIEKSAAAPLLKEGSLSVHVGDG----RKGW-PEFAPYDAIHVGAAAP----------------------------- 154 (215)
Q Consensus 109 a~~~~~~~~~~~~~~~~~v~~~~~d~----~~~~-~~~~~~D~V~~~~~~~----------------------------- 154 (215)
|.+|....++. ..+.+++-+. .... ...+++|+++++++.-
T Consensus 188 a~eN~qr~~l~-----g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~ 262 (328)
T KOG2904|consen 188 AKENAQRLKLS-----GRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYD 262 (328)
T ss_pred HHHHHHHHhhc-----CceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhH
Confidence 99999998876 6777774433 3222 2237899999998751
Q ss_pred ---CchHHHHHhcCCCcEEEEEeC
Q 028002 155 ---EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 155 ---~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
++...+.++|+|||.+.+.+.
T Consensus 263 ~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 263 NLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred HHHHHHHhhHhhcccCCeEEEEec
Confidence 111235689999999999876
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=100.72 Aligned_cols=106 Identities=19% Similarity=0.198 Sum_probs=83.8
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+++.+. ..++.+|||+|||+|.++..+++.. |..+++++|. +.+++.+++++...+.. ++++++.+|+.+
T Consensus 140 ~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~-----~rv~~~~~d~~~ 210 (306)
T TIGR02716 140 LLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVA-----DRMRGIAVDIYK 210 (306)
T ss_pred HHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCcc-----ceEEEEecCccC
Confidence 3444443 5677899999999999999999995 6689999997 78999999998887654 679999999875
Q ss_pred CCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEE
Q 028002 137 GWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~ 173 (215)
... ..+|+|++...++. +++++.+.|+|||++++.
T Consensus 211 ~~~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 211 ESY--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred CCC--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 333 24799887776543 345788999999999885
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.3e-12 Score=96.46 Aligned_cols=107 Identities=19% Similarity=0.154 Sum_probs=79.2
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+.....++.+|||+|||+|.++..+++.. .+++|+|+++.+++.|++++...... .++.+..+|+.
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~-----~~i~~~~~d~~ 114 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVA-----GNVEFEVNDLL 114 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEECChh
Confidence 44555554213467899999999999999998763 68999999999999999988765432 47899999986
Q ss_pred CCCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEE
Q 028002 136 KGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIP 173 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~ 173 (215)
... ++||+|++...+.++ +.++.+.+++++.+.++
T Consensus 115 ~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 115 SLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 643 689999987766443 24556677766655543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.7e-12 Score=102.13 Aligned_cols=116 Identities=14% Similarity=0.146 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
+.......+...+.++.+|||+|||+|..+..+++.+....+|+++|+|+.|++.+++++.... ...++.++++|
T Consensus 49 il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-----p~~~v~~i~gD 123 (301)
T TIGR03438 49 ILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-----PQLEVHGICAD 123 (301)
T ss_pred HHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-----CCceEEEEEEc
Confidence 3444444454446677899999999999999999886323789999999999999998876532 11356778899
Q ss_pred CCCCCCCCCCc----c-EEEEccCCCC--------chHHHHHhcCCCcEEEEEe
Q 028002 134 GRKGWPEFAPY----D-AIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 134 ~~~~~~~~~~~----D-~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~ 174 (215)
..+.......+ + ++++...+.. +++.+.+.|+|||.+++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 124 FTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 87642211222 2 3344444432 3467889999999999855
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=94.75 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=64.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
...++.+|||+|||+|..+..+++.+ +..+++|+|+|+.+++.|++++ .++.+..+|+.+ ....++|
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~-----------~~~~~~~~d~~~-~~~~~sf 106 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL-----------PNINIIQGSLFD-PFKDNFF 106 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC-----------CCCcEEEeeccC-CCCCCCE
Confidence 35667899999999999999998874 3478999999999999998753 346677888776 3344799
Q ss_pred cEEEEccCCCCch
Q 028002 145 DAIHVGAAAPEIP 157 (215)
Q Consensus 145 D~V~~~~~~~~~~ 157 (215)
|+|++...++++.
T Consensus 107 D~V~~~~vL~hl~ 119 (204)
T TIGR03587 107 DLVLTKGVLIHIN 119 (204)
T ss_pred EEEEECChhhhCC
Confidence 9999999887653
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.9e-12 Score=92.74 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=79.8
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. ..+++++.+|+.
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~ 69 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDAL 69 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchh
Confidence 44556554 6778899999999999999999873 7899999999999999988743 158899999998
Q ss_pred CCCCCCCCccEEEEccCCCCchHHHHHh-----cCCCcEEEEE
Q 028002 136 KGWPEFAPYDAIHVGAAAPEIPQALIDQ-----LKPGGRMVIP 173 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~~~~~~~~-----Lk~gG~lv~~ 173 (215)
+.......||.|+++.+++...+.+.++ +.++|.+++.
T Consensus 70 ~~~~~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 70 KFDLPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred cCCccccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEE
Confidence 7655435699999998886433322222 3467777774
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-12 Score=108.23 Aligned_cols=134 Identities=10% Similarity=-0.028 Sum_probs=101.5
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC---------
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--------- 140 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--------- 140 (215)
.+|||++||+|.++..+++.. .+|+++|+++.+++.+++++..++. .++.++.+|+.+....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~~~ 269 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI------DNVQIIRMSAEEFTQAMNGVREFRR 269 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEcCHHHHHHHHhhcccccc
Confidence 479999999999999998875 5899999999999999999988664 4789999997653221
Q ss_pred -------CCCccEEEEccCCCCchHHH-HHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeecccCcccc
Q 028002 141 -------FAPYDAIHVGAAAPEIPQAL-IDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQL 212 (215)
Q Consensus 141 -------~~~~D~V~~~~~~~~~~~~~-~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 212 (215)
...||+|+.+++-..+.+.+ ..+.+|++.++++++.... .+.+.....+ |.......+.+.|.|++.|.+
T Consensus 270 ~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tl-aRDl~~L~~~-Y~l~~v~~~DmFP~T~HvE~v 347 (353)
T TIGR02143 270 LKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETL-KANLEQLSET-HRVERFALFDQFPYTHHMECG 347 (353)
T ss_pred ccccccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHH-HHHHHHHhcC-cEEEEEEEcccCCCCCcEEEE
Confidence 02389999999966655544 4455788888888765421 2222222233 999999999999999999877
Q ss_pred CC
Q 028002 213 RG 214 (215)
Q Consensus 213 ~~ 214 (215)
..
T Consensus 348 ~l 349 (353)
T TIGR02143 348 VL 349 (353)
T ss_pred EE
Confidence 54
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.8e-12 Score=96.02 Aligned_cols=101 Identities=23% Similarity=0.172 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc---------CcccCCCeEEEeCCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA---------PLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---------~~~~~~~v~~~~~d~~~ 136 (215)
..++.+|||+|||.|..+..++.+ | .+|+|+|+|+.+++.+.+. .+.. ......++++.++|+.+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~-G--~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ-G--HEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC-C--CeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECcccC
Confidence 456789999999999999999987 3 7899999999999986432 1111 00123578999999887
Q ss_pred CCCC-CCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEE
Q 028002 137 GWPE-FAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVI 172 (215)
Q Consensus 137 ~~~~-~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~ 172 (215)
..+. .+.||.|+....+.++ .+.+.++|+|||.+++
T Consensus 109 l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 109 LTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 5432 2579999987766555 3568899999996443
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-12 Score=107.91 Aligned_cols=151 Identities=12% Similarity=0.043 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHHhcCC-CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE
Q 028002 51 APHMHATCLQLLEENLK-PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 129 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~ 129 (215)
.+.....+++.+...+. .+.+|||++||+|.++..+++.. .+|+++|.++.+++.+++++..++. .++.+
T Consensus 188 N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~ 258 (362)
T PRK05031 188 NAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI------DNVQI 258 (362)
T ss_pred CHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC------CcEEE
Confidence 33344455544433232 23579999999999999888874 6899999999999999999988764 48999
Q ss_pred EeCCCCCCCCC----------------CCCccEEEEccCCCCchHHH-HHhcCCCcEEEEEeCCCc--eeEEEEEEcCCC
Q 028002 130 HVGDGRKGWPE----------------FAPYDAIHVGAAAPEIPQAL-IDQLKPGGRMVIPVGNIF--QDLKVVDKNQDG 190 (215)
Q Consensus 130 ~~~d~~~~~~~----------------~~~~D~V~~~~~~~~~~~~~-~~~Lk~gG~lv~~~~~~~--~~~~~~~~~~~~ 190 (215)
+.+|+.+.... ...||+|+.+++-..+.+.+ ..+.++++.++++++... ..+..+. .
T Consensus 259 ~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~tlarDl~~L~---~- 334 (362)
T PRK05031 259 IRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPETLCENLETLS---Q- 334 (362)
T ss_pred EECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHHHHHHHHHHc---C-
Confidence 99998653210 12589999999976666555 344467888888876632 1222222 2
Q ss_pred ceEEEeeceEEEeecccCccccCC
Q 028002 191 SLSIWSETSVRYVPLTSRDAQLRG 214 (215)
Q Consensus 191 ~~~~~~~~~~~~~p~~~~~~~~~~ 214 (215)
.|.......+.+.|.|++.|.+..
T Consensus 335 gY~l~~v~~~DmFPqT~HvE~v~l 358 (362)
T PRK05031 335 THKVERFALFDQFPYTHHMECGVL 358 (362)
T ss_pred CcEEEEEEEcccCCCCCcEEEEEE
Confidence 589999999999999999887643
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.3e-12 Score=104.31 Aligned_cols=105 Identities=20% Similarity=0.133 Sum_probs=81.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----CC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~ 141 (215)
..++.+|||+|||+|.+++.++.. + ..+++++|+|+.+++.+++++..++.. ..+++++.+|+.+... ..
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~-g-a~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~~~l~~~~~~~ 291 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLLRTYRDRG 291 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHHHHHHHHHhcC
Confidence 345789999999999998876643 3 368999999999999999999887642 1378999999876432 23
Q ss_pred CCccEEEEccCCC---------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 142 APYDAIHVGAAAP---------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 142 ~~~D~V~~~~~~~---------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
++||+|+++++.- .+...+.++|+|||.|++.+++
T Consensus 292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 5899999998751 1123467899999999986654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=106.24 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ..++.+|||+|||+|..+..+++.. .+++++|+++.+++.+++.... ..++.++++|+.
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~--------~~~i~~~~~d~~ 93 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGH--------YKNVKFMCADVT 93 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEeccc
Confidence 44455554 4456799999999999999999874 6899999999999887653211 157889999886
Q ss_pred CC--CCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEE
Q 028002 136 KG--WPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIP 173 (215)
Q Consensus 136 ~~--~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~ 173 (215)
.. ....++||+|++...++++ ++++.+.|||||++++.
T Consensus 94 ~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 94 SPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred ccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 32 2233789999999877653 35678999999999885
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.6e-12 Score=97.93 Aligned_cols=132 Identities=22% Similarity=0.251 Sum_probs=106.7
Q ss_pred CccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc
Q 028002 40 PMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 119 (215)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 119 (215)
.+.......|.++...+.++.+|. +.||.+|+|-|+|+|+++.++++.++|.++++.+|......+.|.+-++..++.
T Consensus 79 Tl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~ 156 (314)
T KOG2915|consen 79 TLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG 156 (314)
T ss_pred hhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC
Confidence 344555666776667889999998 999999999999999999999999999999999999999999999999998876
Q ss_pred CcccCCCeEEEeCCCCCC-CC-CCCCccEEEEccCCCCc-hHHHHHhcCCCc-EEEEEeCCCc
Q 028002 120 PLLKEGSLSVHVGDGRKG-WP-EFAPYDAIHVGAAAPEI-PQALIDQLKPGG-RMVIPVGNIF 178 (215)
Q Consensus 120 ~~~~~~~v~~~~~d~~~~-~~-~~~~~D~V~~~~~~~~~-~~~~~~~Lk~gG-~lv~~~~~~~ 178 (215)
+++++.+-|+... +. ....+|.|+.+.+.++. +.-+.+.||.+| +|+.-.|...
T Consensus 157 -----~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csFSPCIE 214 (314)
T KOG2915|consen 157 -----DNVTVTHRDVCGSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSFSPCIE 214 (314)
T ss_pred -----cceEEEEeecccCCccccccccceEEEcCCChhhhhhhhHHHhhhcCceEEeccHHHH
Confidence 7999999988653 22 24689999999887653 345566888877 6655555543
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-11 Score=92.01 Aligned_cols=94 Identities=26% Similarity=0.287 Sum_probs=70.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC------
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~------ 138 (215)
.++++.+|||+|||+|.++..+++...+.++++++|+++.+ .. .++.++.+|..+..
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~------~~i~~~~~d~~~~~~~~~l~ 91 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI------ENVDFIRGDFTDEEVLNKIR 91 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC------CCceEEEeeCCChhHHHHHH
Confidence 36788999999999999999998886555789999999854 11 46778888876532
Q ss_pred --CCCCCccEEEEccCC-----------------CCchHHHHHhcCCCcEEEEEeC
Q 028002 139 --PEFAPYDAIHVGAAA-----------------PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 139 --~~~~~~D~V~~~~~~-----------------~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
...++||+|+++... ..+++.+.+.|+|||.+++.+.
T Consensus 92 ~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 92 ERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 123679999987532 1244668899999999999653
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.6e-11 Score=93.98 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=79.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~ 144 (215)
..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.... ..+++...+...... ..++|
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~f 115 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESG-------LKIDYRQTTAEELAAEHPGQF 115 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcC-------CceEEEecCHHHhhhhcCCCc
Confidence 4567899999999999999888763 689999999999999998876533 256777777655431 23689
Q ss_pred cEEEEccCCCC------chHHHHHhcCCCcEEEEEeCC
Q 028002 145 DAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+|++...+++ +++.+.+.|+|||.+++..++
T Consensus 116 D~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 116 DVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred cEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 99998776544 446788999999999987654
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.7e-11 Score=92.55 Aligned_cols=92 Identities=12% Similarity=0.026 Sum_probs=68.5
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHhhcccCccc
Q 028002 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG--PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 123 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~ 123 (215)
|++.+.+.+...+. +. ...+.+|||+|||+|.++..+++.+. +..+++++|+++.+++.|++++
T Consensus 31 GqFfTP~~iAr~~~--i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------- 96 (241)
T PHA03412 31 GAFFTPIGLARDFT--ID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------- 96 (241)
T ss_pred CccCCCHHHHHHHH--Hh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----------
Confidence 55666555444443 12 23367999999999999999987642 2368999999999999999764
Q ss_pred CCCeEEEeCCCCCCCCCCCCccEEEEccCC
Q 028002 124 EGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 124 ~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
.++.++.+|+...... ++||+|++++++
T Consensus 97 -~~~~~~~~D~~~~~~~-~~FDlIIsNPPY 124 (241)
T PHA03412 97 -PEATWINADALTTEFD-TLFDMAISNPPF 124 (241)
T ss_pred -cCCEEEEcchhccccc-CCccEEEECCCC
Confidence 3577888888754333 689999999986
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=98.16 Aligned_cols=108 Identities=21% Similarity=0.195 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
....+||++|||+|..+..+++.. ...+|+++|+++.+++.|++.+...... ....++++++.+|+..... ..++||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGG-AYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccc-cccCCceEEEECchHHHHhhCCCccc
Confidence 345799999999999999998763 3368999999999999999988653211 0123689999999876443 236899
Q ss_pred EEEEccCCC----------CchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAP----------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+++...+ .+.+.+.+.|+|||++++...+
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 999986432 2346788999999999986543
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.8e-11 Score=108.86 Aligned_cols=142 Identities=15% Similarity=0.067 Sum_probs=101.0
Q ss_pred CCcCCCccccCCcccchhHHHHHHHHHHHhcCC---CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 028002 35 PYVDSPMAIGYNATISAPHMHATCLQLLEENLK---PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111 (215)
Q Consensus 35 ~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 111 (215)
.|....+....+..++.|. ...+++.+..+.. ++.+|||+|||+|.+++.+++.. +..+++++|+|+.+++.|++
T Consensus 83 ~F~~l~~~V~p~VLIPRpe-TE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~ 160 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIPEDW-SFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWI 160 (1082)
T ss_pred EecCCceeeCCCcccCchh-HHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHH
Confidence 4445556667777888877 3344444542211 24689999999999999999985 55799999999999999999
Q ss_pred HHHhhcccCc----------ccCCCeEEEeCCCCCCCCCC-CCccEEEEccCCC--------------C-----------
Q 028002 112 NIEKSAAAPL----------LKEGSLSVHVGDGRKGWPEF-APYDAIHVGAAAP--------------E----------- 155 (215)
Q Consensus 112 ~~~~~~~~~~----------~~~~~v~~~~~d~~~~~~~~-~~~D~V~~~~~~~--------------~----------- 155 (215)
|+..++.... ...++++++++|+.+..... ..||+|+++++.- +
T Consensus 161 Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p 240 (1082)
T PLN02672 161 NLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN 240 (1082)
T ss_pred HHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence 9987543100 11147999999988765432 3699999998630 0
Q ss_pred -------------------chHHHHHhcCCCcEEEEEeCCCc
Q 028002 156 -------------------IPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 156 -------------------~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
+.+.+.++|+|||++++.++...
T Consensus 241 ~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q 282 (1082)
T PLN02672 241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRP 282 (1082)
T ss_pred cccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH
Confidence 11345679999999999987653
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-11 Score=96.78 Aligned_cols=106 Identities=21% Similarity=0.240 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCCCc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~ 144 (215)
....+||++|||.|..+..+++. .+..+++.+|+++.+++.+++.+..... .+..++++++.+|+..... ..+.|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCC
Confidence 44689999999999999999876 3347899999999999999998865321 1334789999999765432 13689
Q ss_pred cEEEEccCCC----------CchHHHHHhcCCCcEEEEEeC
Q 028002 145 DAIHVGAAAP----------EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 145 D~V~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
|+|+++...+ .+.+.+.+.|+|||+++....
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 9999986543 245678999999999987443
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8e-11 Score=86.83 Aligned_cols=96 Identities=24% Similarity=0.291 Sum_probs=74.1
Q ss_pred CcccchhHHHHHHHHHHH-hcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028002 46 NATISAPHMHATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~-~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
.|+.+.+.+.+.++.... ...-.+.+|+|+|||||.++...+-. |+ .+|+|+|+++++++.+++|.....
T Consensus 22 EQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l-Ga-~~V~~vdiD~~a~ei~r~N~~~l~------- 92 (198)
T COG2263 22 EQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL-GA-SRVLAVDIDPEALEIARANAEELL------- 92 (198)
T ss_pred eecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc-CC-cEEEEEecCHHHHHHHHHHHHhhC-------
Confidence 344444445555554432 12344678999999999999988866 67 799999999999999999998732
Q ss_pred CCeEEEeCCCCCCCCCCCCccEEEEccCC
Q 028002 125 GSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
.++++..+|+.+.. ..+|.++.++++
T Consensus 93 g~v~f~~~dv~~~~---~~~dtvimNPPF 118 (198)
T COG2263 93 GDVEFVVADVSDFR---GKFDTVIMNPPF 118 (198)
T ss_pred CceEEEEcchhhcC---CccceEEECCCC
Confidence 58999999998865 568999999887
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.7e-11 Score=92.86 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=67.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHh---CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028002 67 KPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
.++.+|||+|||+|.++..+++.. ++..+++|+|+++.+++.|+++... .++.+...+........++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---------PGVTFRQAVSDELVAEGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---------CCCeEEEEecccccccCCC
Confidence 456799999999999998887643 3446999999999999999876533 2445555444332223478
Q ss_pred ccEEEEccCCCCchH--------HHHHhcCCCcEEE
Q 028002 144 YDAIHVGAAAPEIPQ--------ALIDQLKPGGRMV 171 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~--------~~~~~Lk~gG~lv 171 (215)
||+|+++..++++.+ ++.++++ ++.++
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEE
Confidence 999999998877653 4556666 43433
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.2e-11 Score=100.41 Aligned_cols=105 Identities=25% Similarity=0.284 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-CCCCCc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~ 144 (215)
..++.+|||+|||.|+-+..++..++..+.+++.|+++..++..++++...+. .++.+...|..... ...+.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------SNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCchhhhhhhchhhc
Confidence 67899999999999999999999987778999999999999999999998765 57888888876432 112579
Q ss_pred cEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 145 DAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|.|+++.++. .+++.+.++|||||.|++++++
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 9999888763 1224567899999999999876
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-11 Score=91.34 Aligned_cols=106 Identities=25% Similarity=0.337 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcCCC--CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028002 53 HMHATCLQLLEENLKP--GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 53 ~~~~~~l~~l~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
.+..+.++.+. +++ ..-|||||||+|..+..+... | ..++|+|+|+.|++.|.+.-- .-+++
T Consensus 35 em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~-G--h~wiGvDiSpsML~~a~~~e~-----------egdli 98 (270)
T KOG1541|consen 35 EMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDS-G--HQWIGVDISPSMLEQAVEREL-----------EGDLI 98 (270)
T ss_pred HHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccC-C--ceEEeecCCHHHHHHHHHhhh-----------hcCee
Confidence 34677788887 554 678999999999999888766 3 799999999999999986321 23577
Q ss_pred eCCCCCCCC-CCCCccEEEEccCCCCch-----------------HHHHHhcCCCcEEEEEe
Q 028002 131 VGDGRKGWP-EFAPYDAIHVGAAAPEIP-----------------QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 131 ~~d~~~~~~-~~~~~D~V~~~~~~~~~~-----------------~~~~~~Lk~gG~lv~~~ 174 (215)
.+|.-...+ ..++||.+++...++++. ..+..+|++|++.++.+
T Consensus 99 l~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 99 LCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred eeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 777665443 448999998777654433 23677888888888754
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.6e-12 Score=92.85 Aligned_cols=97 Identities=16% Similarity=0.214 Sum_probs=75.9
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE-EEeCCCCCCC-CCCCCccE
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS-VHVGDGRKGW-PEFAPYDA 146 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~~D~ 146 (215)
...|||+|||||..-...-- .|..+|+++|.++.|-+.+.+.+.++.- .++. +++++..+.. ..+++||.
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~------~~~~~fvva~ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKP------LQVERFVVADGENLPQLADGSYDT 148 (252)
T ss_pred ccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccC------cceEEEEeechhcCcccccCCeee
Confidence 35689999999987654421 2457999999999999999998887632 5666 8899988765 34589999
Q ss_pred EEEccCCC------CchHHHHHhcCCCcEEEEE
Q 028002 147 IHVGAAAP------EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 147 V~~~~~~~------~~~~~~~~~Lk~gG~lv~~ 173 (215)
|++...+- ..++++.++|+|||++++-
T Consensus 149 VV~TlvLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 149 VVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 98887652 3557889999999999983
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.9e-11 Score=90.72 Aligned_cols=96 Identities=23% Similarity=0.325 Sum_probs=72.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 143 (215)
+.++.+|||+|||+|.++..+++..+ ..++++|+++.+++.+++ .+++++.+|+.... ...++
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~-------------~~~~~~~~d~~~~l~~~~~~s 75 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA-------------RGVNVIQGDLDEGLEAFPDKS 75 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH-------------cCCeEEEEEhhhcccccCCCC
Confidence 55678999999999999988877632 578999999999888753 24567777775422 23368
Q ss_pred ccEEEEccCCCCch---HHHHHhcCCCcEEEEEeCC
Q 028002 144 YDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 144 ~D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~~~~~ 176 (215)
||+|++...++++. ..+.++++++|.+++++++
T Consensus 76 fD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 76 FDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred cCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCC
Confidence 99999999887654 3455667778888887766
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.6e-11 Score=96.05 Aligned_cols=105 Identities=21% Similarity=0.214 Sum_probs=79.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccEE
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~V 147 (215)
..+||++|||+|..+..+++.. +..+++++|+++.+++.+++.+..... .+...+++++.+|...... ..++||+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccEE
Confidence 4599999999999998888763 347899999999999999998765431 1333678888888755322 13689999
Q ss_pred EEccCCC----------CchHHHHHhcCCCcEEEEEeCC
Q 028002 148 HVGAAAP----------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 148 ~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+++...+ .+.+.+.+.|+|||.+++...+
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 9876522 2346788999999999986543
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=91.54 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=70.0
Q ss_pred CCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028002 45 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 45 ~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
.|++.+.+.++..++ +. .....+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++
T Consensus 45 ~G~FfTP~~i~~~f~--~~--~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~----------- 108 (279)
T PHA03411 45 SGAFFTPEGLAWDFT--ID--AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL----------- 108 (279)
T ss_pred ceeEcCCHHHHHHHH--hc--cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----------
Confidence 466665555443332 22 3445799999999999999888774 2368999999999999998753
Q ss_pred CCeEEEeCCCCCCCCCCCCccEEEEccCCCC
Q 028002 125 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE 155 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~ 155 (215)
.++.++.+|+...... ++||+|++++++.+
T Consensus 109 ~~v~~v~~D~~e~~~~-~kFDlIIsNPPF~~ 138 (279)
T PHA03411 109 PEAEWITSDVFEFESN-EKFDVVISNPPFGK 138 (279)
T ss_pred cCCEEEECchhhhccc-CCCcEEEEcCCccc
Confidence 3678899998875433 68999999988743
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=90.27 Aligned_cols=92 Identities=23% Similarity=0.337 Sum_probs=68.9
Q ss_pred HHHHHHHHHh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 55 HATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 55 ~~~~l~~l~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
...++..+.. ...++.+|||+|||+|..+..+++.. ..++++|+++.+++.|++++...+.. .++.+..+|
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~-----~~i~~~~~d 120 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLA-----GNITFEVGD 120 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCc-----cCcEEEEcC
Confidence 3444555542 13567899999999999999998873 56999999999999999988765432 478888888
Q ss_pred CCCCCCCCCCccEEEEccCCCCch
Q 028002 134 GRKGWPEFAPYDAIHVGAAAPEIP 157 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~~~~ 157 (215)
... ..++||+|++...++++.
T Consensus 121 ~~~---~~~~fD~v~~~~~l~~~~ 141 (230)
T PRK07580 121 LES---LLGRFDTVVCLDVLIHYP 141 (230)
T ss_pred chh---ccCCcCEEEEcchhhcCC
Confidence 432 236899999988775533
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.6e-11 Score=92.27 Aligned_cols=100 Identities=19% Similarity=0.255 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCccE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~ 146 (215)
++.+|||+|||+|.++..+++.. .+++++|.++.+++.+++++...+. .++.+..++..+.... .++||+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~ 115 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVEDLAEKGAKSFDV 115 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhcCCCCCccE
Confidence 47899999999999999888763 5699999999999999988776432 2578888887654332 268999
Q ss_pred EEEccCCCC------chHHHHHhcCCCcEEEEEeCC
Q 028002 147 IHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 147 V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|++...+++ +++.+.+.|++||.+++...+
T Consensus 116 i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 116 VTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred EEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 998865543 446788999999999987653
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.2e-11 Score=107.17 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
.++.+|||+|||+|.+++.+++. |. .+|+++|+|+.+++.+++++..++.. ..+++++++|+.+... ..++||
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga-~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~~l~~~~~~fD 610 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GA-KSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLAWLKEAREQFD 610 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHHHHHHcCCCcC
Confidence 35789999999999999999986 43 57999999999999999999887642 1378999999765331 136899
Q ss_pred EEEEccCCC-----------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 146 AIHVGAAAP-----------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~~~-----------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+|+++++.- .+...+.++|+|||.++++++..
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred EEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 999998741 13356788999999999876654
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-10 Score=91.74 Aligned_cols=98 Identities=19% Similarity=0.303 Sum_probs=68.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHH--HHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSI--QNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~--~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
-.|.+|||||||+|+.+..++.. |+ ..|+|+|.+........ +.+. +.. ..+......+.+. +..+.|
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~-GA-~~ViGiDP~~lf~~QF~~i~~~l--g~~-----~~~~~lplgvE~L-p~~~~F 183 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGR-GA-KSVIGIDPSPLFYLQFEAIKHFL--GQD-----PPVFELPLGVEDL-PNLGAF 183 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhc-CC-CEEEEECCChHHHHHHHHHHHHh--CCC-----ccEEEcCcchhhc-cccCCc
Confidence 34789999999999999999988 56 68999999887654422 1221 110 1222222223332 335889
Q ss_pred cEEEEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028002 145 DAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 145 D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
|+|+|.+++-| .+..+...|++||.|++.+
T Consensus 184 DtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 184 DTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred CEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 99999999865 3468899999999999854
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=93.53 Aligned_cols=97 Identities=23% Similarity=0.224 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028002 54 MHATCLQLLEEN-LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 54 ~~~~~l~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
....+++.+... ..++.+|||+|||+|.++..+++. + .+|+++|+|+.+++.+++++...... .....++.+...
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-g--~~V~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~f~~~ 204 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-G--AIVSASDISAAMVAEAERRAKEALAA-LPPEVLPKFEAN 204 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcccc-cccccceEEEEc
Confidence 345556665421 125689999999999999999986 3 68999999999999999987653211 011146788888
Q ss_pred CCCCCCCCCCCccEEEEccCCCCch
Q 028002 133 DGRKGWPEFAPYDAIHVGAAAPEIP 157 (215)
Q Consensus 133 d~~~~~~~~~~~D~V~~~~~~~~~~ 157 (215)
|.... .+.||+|++...+.+++
T Consensus 205 Dl~~l---~~~fD~Vv~~~vL~H~p 226 (315)
T PLN02585 205 DLESL---SGKYDTVTCLDVLIHYP 226 (315)
T ss_pred chhhc---CCCcCEEEEcCEEEecC
Confidence 86542 27899999998876655
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=87.19 Aligned_cols=119 Identities=14% Similarity=0.035 Sum_probs=86.5
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE
Q 028002 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 129 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~ 129 (215)
+...+...+...+.. .-++.+|||++||+|.+++.++++ |. .+++++|.++.+++.+++++...+.. .++++
T Consensus 32 t~~~vrea~f~~l~~-~~~g~~vLDLfaGsG~lglea~sr-ga-~~v~~vE~~~~a~~~~~~N~~~~~~~-----~~~~~ 103 (189)
T TIGR00095 32 TTRVVRELFFNILRP-EIQGAHLLDVFAGSGLLGEEALSR-GA-KVAFLEEDDRKANQTLKENLALLKSG-----EQAEV 103 (189)
T ss_pred chHHHHHHHHHHHHH-hcCCCEEEEecCCCcHHHHHHHhC-CC-CEEEEEeCCHHHHHHHHHHHHHhCCc-----ccEEE
Confidence 333344455555542 345789999999999999999998 44 58999999999999999999887653 47889
Q ss_pred EeCCCCCCCC---CC-CCccEEEEccCCCC-chH----HHH--HhcCCCcEEEEEeCC
Q 028002 130 HVGDGRKGWP---EF-APYDAIHVGAAAPE-IPQ----ALI--DQLKPGGRMVIPVGN 176 (215)
Q Consensus 130 ~~~d~~~~~~---~~-~~~D~V~~~~~~~~-~~~----~~~--~~Lk~gG~lv~~~~~ 176 (215)
+.+|+..... .. ..||+|+.++++.. ... .+. .+|+++|.+++....
T Consensus 104 ~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 104 VRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 9999854321 11 24899999998853 222 222 368899999987654
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=78.00 Aligned_cols=95 Identities=26% Similarity=0.363 Sum_probs=74.2
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccEEEE
Q 028002 71 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAIHV 149 (215)
Q Consensus 71 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~V~~ 149 (215)
+++|+|||+|..+..+++. ...+++++|.++..++.+++...... ..++.+...|..+... ..++||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDAEELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhccc------ccceEEEEcChhhhccccCCceEEEEE
Confidence 4899999999999988872 34799999999999998885333221 2578888888877553 3478999999
Q ss_pred ccCCCC-------chHHHHHhcCCCcEEEEE
Q 028002 150 GAAAPE-------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 150 ~~~~~~-------~~~~~~~~Lk~gG~lv~~ 173 (215)
+..+.. +++.+.+.|++||.+++.
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 988754 345678899999999886
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=96.54 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=86.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----CCCCc
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EFAPY 144 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~~ 144 (215)
|.+||++.|=||..++.++.. |. .+|+++|.|...++.|++|+.-++.. ..++.++++|+.+.+. ...+|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA-~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GA-SEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CC-CceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHHHHHHHhcCCcc
Confidence 899999999999999999876 43 59999999999999999999988753 3578999999876543 22489
Q ss_pred cEEEEccCC---------------CCchHHHHHhcCCCcEEEEEeCCCc
Q 028002 145 DAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 145 D~V~~~~~~---------------~~~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
|+|+.+++. ..+...+.++|+|||.++++++...
T Consensus 292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 999999864 2244578899999999999887653
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-10 Score=91.47 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=78.2
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028002 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
.+..+.+...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. .++
T Consensus 24 fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---------~~v 89 (272)
T PRK00274 24 FLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---------DNL 89 (272)
T ss_pred cCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---------Cce
Confidence 3455666778888775 7778899999999999999999984 4899999999999999876532 489
Q ss_pred EEEeCCCCCCCCCCCCccEEEEccCCCCchHHHHHhc
Q 028002 128 SVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQL 164 (215)
Q Consensus 128 ~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~~~~~~L 164 (215)
+++.+|+.......-.+|.|+++.+..-.-.-+.++|
T Consensus 90 ~~i~~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 90 TIIEGDALKVDLSELQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred EEEEChhhcCCHHHcCcceEEEeCCccchHHHHHHHH
Confidence 9999998875433112588999887644334444444
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-10 Score=91.56 Aligned_cols=108 Identities=21% Similarity=0.294 Sum_probs=84.0
Q ss_pred CCcc-cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCccc
Q 028002 45 YNAT-ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 123 (215)
Q Consensus 45 ~~~~-~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~ 123 (215)
.|++ +..+.+...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+|+.+++.+++++...+..
T Consensus 14 ~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~---- 84 (294)
T PTZ00338 14 FGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLA---- 84 (294)
T ss_pred CCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCC----
Confidence 3555 467778888888876 7788999999999999999999874 68999999999999999988764422
Q ss_pred CCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchHHHHHhc
Q 028002 124 EGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQL 164 (215)
Q Consensus 124 ~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~~~~~~L 164 (215)
.+++++.+|+..... ..||.|+++.++.-.-..+.++|
T Consensus 85 -~~v~ii~~Dal~~~~--~~~d~VvaNlPY~Istpil~~ll 122 (294)
T PTZ00338 85 -SKLEVIEGDALKTEF--PYFDVCVANVPYQISSPLVFKLL 122 (294)
T ss_pred -CcEEEEECCHhhhcc--cccCEEEecCCcccCcHHHHHHH
Confidence 689999999976433 46899999887743333333333
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.1e-10 Score=86.41 Aligned_cols=119 Identities=14% Similarity=0.123 Sum_probs=84.5
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh------cccCccc
Q 028002 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS------AAAPLLK 123 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~------~~~~~~~ 123 (215)
..|.+...+ ..+. ..++.+||+.|||.|..+..++.+ | .+|+|+|+|+.+++.+.+..... +......
T Consensus 28 pnp~L~~~~-~~l~--~~~~~rvLvPgCGkg~D~~~LA~~-G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 101 (226)
T PRK13256 28 PNEFLVKHF-SKLN--INDSSVCLIPMCGCSIDMLFFLSK-G--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK 101 (226)
T ss_pred CCHHHHHHH-HhcC--CCCCCeEEEeCCCChHHHHHHHhC-C--CcEEEEecCHHHHHHHHHHcCCCcceecccccceec
Confidence 344434443 3333 456789999999999999999998 4 68999999999999876532100 0000112
Q ss_pred CCCeEEEeCCCCCCCC---CCCCccEEEEccCCCCch--------HHHHHhcCCCcEEEEEe
Q 028002 124 EGSLSVHVGDGRKGWP---EFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 124 ~~~v~~~~~d~~~~~~---~~~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~ 174 (215)
..++++.++|+.+..+ ..+.||.|+....+.+++ +.+.++|+|||.+++.+
T Consensus 102 ~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 102 GDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 3588999999987643 125899999888876666 45778999999888754
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.7e-11 Score=100.03 Aligned_cols=145 Identities=21% Similarity=0.211 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
++...++.+. ..++.+|||+-||.|.+++.+++.. .+|+|+|+++.+++.|+++++.++. .|+.+..++
T Consensus 281 l~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i------~N~~f~~~~ 349 (432)
T COG2265 281 LYETALEWLE--LAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGI------DNVEFIAGD 349 (432)
T ss_pred HHHHHHHHHh--hcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEeCC
Confidence 3444455554 5677899999999999999999775 8999999999999999999999876 579999999
Q ss_pred CCCCCCC---CCCccEEEEccCCCCchHHH---HHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeeccc
Q 028002 134 GRKGWPE---FAPYDAIHVGAAAPEIPQAL---IDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTS 207 (215)
Q Consensus 134 ~~~~~~~---~~~~D~V~~~~~~~~~~~~~---~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 207 (215)
+...... ...+|.|+.+++-..+.+.+ ...++|..+++++|+... ..+.+.......+.......+...|.|+
T Consensus 350 ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~T-laRDl~~L~~~gy~i~~v~~~DmFP~T~ 428 (432)
T COG2265 350 AEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPAT-LARDLAILASTGYEIERVQPFDMFPHTH 428 (432)
T ss_pred HHHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHH-HHHHHHHHHhCCeEEEEEEEeccCCCcc
Confidence 8765443 24789999999876666443 345678888888876532 1222333345566677778888889988
Q ss_pred Ccc
Q 028002 208 RDA 210 (215)
Q Consensus 208 ~~~ 210 (215)
+.+
T Consensus 429 HvE 431 (432)
T COG2265 429 HVE 431 (432)
T ss_pred ccC
Confidence 765
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=92.92 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH--HHhhcccCcccCCCeEEEeCCCCCCCC-CCCC
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN--IEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~ 143 (215)
....+||++|||+|..+..+++. .+..+++++|+++.+++.|++. +.... ...+..++++++.+|+..... ..+.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~-~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLN-KSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhc-cccCCCCceEEEECcHHHHHHhcCCC
Confidence 33469999999999988888876 3447999999999999999962 11110 011234799999999886443 2368
Q ss_pred ccEEEEccCCC-----------CchHHHHHhcCCCcEEEEEeC
Q 028002 144 YDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 144 ~D~V~~~~~~~-----------~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
||+|+++.+.+ .+.+.+.+.|+|||++++...
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99999986432 144678999999999988644
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-10 Score=86.83 Aligned_cols=125 Identities=20% Similarity=0.195 Sum_probs=88.6
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCC
Q 028002 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 125 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 125 (215)
...++.-.+...+...+....-++.+|||+.||||.++..++++ |. .+|+.+|.++..+...++|++..+.. +
T Consensus 20 ~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-GA-~~v~fVE~~~~a~~~i~~N~~~l~~~-----~ 92 (183)
T PF03602_consen 20 NTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-GA-KSVVFVEKNRKAIKIIKKNLEKLGLE-----D 92 (183)
T ss_dssp TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHT-G-----G
T ss_pred CcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-CC-CeEEEEECCHHHHHHHHHHHHHhCCC-----c
Confidence 33455555677777777632146899999999999999999988 44 78999999999999999999987764 4
Q ss_pred CeEEEeCCCCCCCC----CCCCccEEEEccCCCCch--H----HHH--HhcCCCcEEEEEeCCC
Q 028002 126 SLSVHVGDGRKGWP----EFAPYDAIHVGAAAPEIP--Q----ALI--DQLKPGGRMVIPVGNI 177 (215)
Q Consensus 126 ~v~~~~~d~~~~~~----~~~~~D~V~~~~~~~~~~--~----~~~--~~Lk~gG~lv~~~~~~ 177 (215)
+..++..|....+. ...+||+|+++++...-. . .+. .+|+++|.+++.+...
T Consensus 93 ~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 93 KIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp GEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred ceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 68889988654331 237899999999986532 2 333 6789999999987554
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-10 Score=86.52 Aligned_cols=101 Identities=24% Similarity=0.290 Sum_probs=79.6
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---CCCCCccE
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFAPYDA 146 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~ 146 (215)
..+||||||.|.....+|.. .|+..++|+|++...+..+.+++...+. .|+.++++|+...+ ...+++|.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~-~Pd~n~iGiE~~~~~v~~a~~~~~~~~l------~Nv~~~~~da~~~l~~~~~~~~v~~ 91 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKR-NPDINFIGIEIRKKRVAKALRKAEKRGL------KNVRFLRGDARELLRRLFPPGSVDR 91 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHH-STTSEEEEEES-HHHHHHHHHHHHHHTT------SSEEEEES-CTTHHHHHSTTTSEEE
T ss_pred CeEEEecCCCCHHHHHHHHH-CCCCCEEEEecchHHHHHHHHHHHhhcc------cceEEEEccHHHHHhhcccCCchhe
Confidence 38999999999999999999 4789999999999999999998888665 69999999987632 23478999
Q ss_pred EEEccCCCC--------------chHHHHHhcCCCcEEEEEeCCC
Q 028002 147 IHVGAAAPE--------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 147 V~~~~~~~~--------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|+...+-++ +++.+.+.|+|||.|.+.+...
T Consensus 92 i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~ 136 (195)
T PF02390_consen 92 IYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE 136 (195)
T ss_dssp EEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred EEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence 988887542 4467899999999999988763
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.2e-10 Score=90.84 Aligned_cols=114 Identities=27% Similarity=0.276 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028002 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
.|. +++++-.+. ++++|..|||--||||++...+.-. | ..++|+|++..|+.-|+.|++..+. ....+.
T Consensus 182 ~P~-lAR~mVNLa-~v~~G~~vlDPFcGTGgiLiEagl~-G--~~viG~Did~~mv~gak~Nl~~y~i------~~~~~~ 250 (347)
T COG1041 182 DPR-LARAMVNLA-RVKRGELVLDPFCGTGGILIEAGLM-G--ARVIGSDIDERMVRGAKINLEYYGI------EDYPVL 250 (347)
T ss_pred CHH-HHHHHHHHh-ccccCCEeecCcCCccHHHHhhhhc-C--ceEeecchHHHHHhhhhhhhhhhCc------CceeEE
Confidence 344 455555554 5889999999999999999888755 4 7999999999999999999988764 344444
Q ss_pred eC-CCCCCCCCCCCccEEEEccCC---------------CCchHHHHHhcCCCcEEEEEeC
Q 028002 131 VG-DGRKGWPEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 131 ~~-d~~~~~~~~~~~D~V~~~~~~---------------~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
.. |+.........+|.|+++++. ..+++.+.++|++||+++++.+
T Consensus 251 ~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 251 KVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 44 887766554569999999875 1234567899999999999988
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.1e-10 Score=87.39 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=81.4
Q ss_pred Cc-ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028002 46 NA-TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 46 ~~-~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
|+ ++..+.+...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. .
T Consensus 8 GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~--------~ 74 (258)
T PRK14896 8 GQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA--------A 74 (258)
T ss_pred CccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc--------C
Confidence 44 3467778888888875 7778999999999999999999883 6899999999999999987743 1
Q ss_pred CCeEEEeCCCCCCCCCCCCccEEEEccCCCCchHHHHHhcC
Q 028002 125 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLK 165 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk 165 (215)
.+++++.+|+..... ..||.|+++.++.-..+.+.++++
T Consensus 75 ~~v~ii~~D~~~~~~--~~~d~Vv~NlPy~i~s~~~~~l~~ 113 (258)
T PRK14896 75 GNVEIIEGDALKVDL--PEFNKVVSNLPYQISSPITFKLLK 113 (258)
T ss_pred CCEEEEEeccccCCc--hhceEEEEcCCcccCcHHHHHHHh
Confidence 589999999877543 358999999887543233333343
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6e-11 Score=93.93 Aligned_cols=126 Identities=17% Similarity=0.122 Sum_probs=88.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC-----CCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-----WPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~-----~~~ 140 (215)
.+++..++++|||-|+..+..-+. |- +.++|+|+.+..++.|+++.+..........-.+.|+.+|.... .+.
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kA-gI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKA-GI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhh-cc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 577889999999999888777665 34 78999999999999999998764321000012467888887642 222
Q ss_pred CCC-ccEEEEccCCCCc----------hHHHHHhcCCCcEEEEEeCCCceeEEEEEEcCCCceE
Q 028002 141 FAP-YDAIHVGAAAPEI----------PQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLS 193 (215)
Q Consensus 141 ~~~-~D~V~~~~~~~~~----------~~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~ 193 (215)
.++ ||+|-|...+|.. +.++.++|+|||+++-++|+.......++......|.
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~g 256 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFG 256 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhc
Confidence 234 9999888877643 3567899999999999999975333333333333443
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=93.04 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=76.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCc----ccCCCeEEEeCCCCCC-----C
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL----LKEGSLSVHVGDGRKG-----W 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~----~~~~~v~~~~~d~~~~-----~ 138 (215)
++.+|||+|||-|+...-.... +. ..++|+|++...++.|++++.+...... ...-...++.+|.... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999998877766654 34 7999999999999999999944321100 0012557788887632 2
Q ss_pred CC-CCCccEEEEccCCCCch----------HHHHHhcCCCcEEEEEeCCCcee
Q 028002 139 PE-FAPYDAIHVGAAAPEIP----------QALIDQLKPGGRMVIPVGNIFQD 180 (215)
Q Consensus 139 ~~-~~~~D~V~~~~~~~~~~----------~~~~~~Lk~gG~lv~~~~~~~~~ 180 (215)
.. ...||+|-|...+|... .++.+.|+|||+++.++++....
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 22 25899999999887544 57889999999999999987543
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-11 Score=93.00 Aligned_cols=110 Identities=20% Similarity=0.248 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028002 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
-|..+.+++..+. ..+-.++||+|||||..+..+-... ..++|+|+|++|++.|.++- . -=.+.
T Consensus 110 vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg----~-------YD~L~ 173 (287)
T COG4976 110 VPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKG----L-------YDTLY 173 (287)
T ss_pred cHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhcc----c-------hHHHH
Confidence 3445566666554 4556799999999999999998876 78999999999999987531 1 01222
Q ss_pred eCCCCCCC--CCCCCccEEEEccCC------CCchHHHHHhcCCCcEEEEEeCC
Q 028002 131 VGDGRKGW--PEFAPYDAIHVGAAA------PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 131 ~~d~~~~~--~~~~~~D~V~~~~~~------~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+++...+. ...++||+|.+..++ +.++..+...|+|||.+.+++-.
T Consensus 174 ~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 174 VAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred HHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence 33332222 233789999877654 45566788999999999998744
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.2e-10 Score=98.34 Aligned_cols=108 Identities=17% Similarity=0.169 Sum_probs=80.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH--HHhhcccCcccCCCeEEEeCCCCCCCC-CCCC
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN--IEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~--~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~ 143 (215)
++..+|||+|||+|..+..+++. ++..+++++|+|+.+++.++++ +..... ..+..++++++.+|..+... ..++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~-~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNG-GALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhc-cccCCCceEEEEChHHHHHHhCCCC
Confidence 44679999999999999999875 3337999999999999999983 322110 01233689999999876432 2368
Q ss_pred ccEEEEccCCCC-----------chHHHHHhcCCCcEEEEEeCC
Q 028002 144 YDAIHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 144 ~D~V~~~~~~~~-----------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
||+|+++.+.+. +.+.+.+.|+|||.+++...+
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 999999875432 346788999999999986543
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.6e-10 Score=83.00 Aligned_cols=118 Identities=22% Similarity=0.200 Sum_probs=80.7
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCe---------EEEEecChHHHHHHHHHHHhhcc
Q 028002 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGR---------AVGVEHIPELVVSSIQNIEKSAA 118 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~---------v~~~D~s~~~~~~a~~~~~~~~~ 118 (215)
....|.+...++.... .+++..|||-.||+|.+.+..+... .+.. ++|+|+++.+++.+++|+...+.
T Consensus 10 a~L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~ 86 (179)
T PF01170_consen 10 APLRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV 86 (179)
T ss_dssp TSS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHhccc
Confidence 3345665566665544 7788999999999999999888775 3333 89999999999999999988776
Q ss_pred cCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC--------------chHHHHHhcCCCcEEEEE
Q 028002 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE--------------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 119 ~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~--------------~~~~~~~~Lk~gG~lv~~ 173 (215)
. ..+.+.+.|+.......+.+|.|++++++-. +.+.+.++|++...++++
T Consensus 87 ~-----~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 87 E-----DYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp C-----GGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred C-----CceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 4 5789999998876644478999999998732 234567788884444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=86.78 Aligned_cols=108 Identities=18% Similarity=0.126 Sum_probs=83.3
Q ss_pred Cc-ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028002 46 NA-TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 46 ~~-~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
|+ ++..+.+...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++.. .
T Consensus 8 gq~fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--------~ 74 (253)
T TIGR00755 8 GQNFLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--------Y 74 (253)
T ss_pred CCccCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--------C
Confidence 44 4567777888888876 6778899999999999999999985 4699999999999999877642 1
Q ss_pred CCeEEEeCCCCCCCCCCCCcc---EEEEccCCCCchHHHHHhc-CCCc
Q 028002 125 GSLSVHVGDGRKGWPEFAPYD---AIHVGAAAPEIPQALIDQL-KPGG 168 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~~~~~~D---~V~~~~~~~~~~~~~~~~L-k~gG 168 (215)
.+++++.+|+...... .+| .|+++.+.+-..+.+.+++ .+++
T Consensus 75 ~~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 75 ERLEVIEGDALKVDLP--DFPKQLKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred CcEEEEECchhcCChh--HcCCcceEEEcCChhhHHHHHHHHhccCCC
Confidence 5889999998775442 466 8888888765555566666 4443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.8e-11 Score=98.60 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=85.5
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----------
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---------- 139 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---------- 139 (215)
..|||+-||.|.+++.+++.. .+|+|+|.++.+++.|++++..++. .+++++.+++.+...
T Consensus 198 ~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i------~n~~f~~~~~~~~~~~~~~~r~~~~ 268 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGI------DNVEFIRGDAEDFAKALAKAREFNR 268 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--------SEEEEE--SHHCCCHHCCS-GGTT
T ss_pred CcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCC------CcceEEEeeccchhHHHHhhHHHHh
Confidence 389999999999999999876 7999999999999999999998876 689999876543211
Q ss_pred ------CCCCccEEEEccCCCCchHHHHHhc-CCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeecccCcccc
Q 028002 140 ------EFAPYDAIHVGAAAPEIPQALIDQL-KPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQL 212 (215)
Q Consensus 140 ------~~~~~D~V~~~~~~~~~~~~~~~~L-k~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 212 (215)
....+|+|+.+++-..+.+.+.+.+ ++. .++...++.....+.+..... .|.......+.+.|.|++.+.+
T Consensus 269 ~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~-~ivYvSCnP~tlaRDl~~L~~-~y~~~~v~~~DmFP~T~HvE~v 346 (352)
T PF05958_consen 269 LKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLK-RIVYVSCNPATLARDLKILKE-GYKLEKVQPVDMFPQTHHVETV 346 (352)
T ss_dssp GGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSS-EEEEEES-HHHHHHHHHHHHC-CEEEEEEEEE-SSTTSS--EEE
T ss_pred hhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCC-eEEEEECCHHHHHHHHHHHhh-cCEEEEEEEeecCCCCCcEEEE
Confidence 1136899999998766555444333 343 555544443322222222223 5888999999999999998876
Q ss_pred C
Q 028002 213 R 213 (215)
Q Consensus 213 ~ 213 (215)
.
T Consensus 347 ~ 347 (352)
T PF05958_consen 347 A 347 (352)
T ss_dssp E
T ss_pred E
Confidence 4
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.8e-10 Score=84.96 Aligned_cols=101 Identities=23% Similarity=0.280 Sum_probs=85.7
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCCCCccE
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEFAPYDA 146 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~~D~ 146 (215)
..+||||||.|.....+|+. .|+..++|+|+....+..|.+.+...++ .|+.+++.|+.. ...+.++.|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~~~~sl~~ 122 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLIPDGSLDK 122 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcCCCCCeeE
Confidence 58999999999999999999 5889999999999999999999988764 499999999875 3345469999
Q ss_pred EEEccCCCC--------------chHHHHHhcCCCcEEEEEeCCC
Q 028002 147 IHVGAAAPE--------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 147 V~~~~~~~~--------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|+...+.++ +++.+.+.|+|||.|.+.+.+.
T Consensus 123 I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 123 IYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 988887533 4467899999999999988763
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5e-09 Score=77.91 Aligned_cols=135 Identities=19% Similarity=0.213 Sum_probs=97.6
Q ss_pred CcCCCccccC--CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH
Q 028002 36 YVDSPMAIGY--NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 36 y~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~ 113 (215)
|..+.++... +..++.-.+...+...+...--.+.++||+.+|+|.++..++++ |. .+++.+|.+...+...++|+
T Consensus 9 ~kgr~L~~p~~~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA-~~~~~vE~~~~a~~~l~~N~ 86 (187)
T COG0742 9 YKGRKLKTPDGPGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSR-GA-ARVVFVEKDRKAVKILKENL 86 (187)
T ss_pred ccCCcccCCCCCCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhC-CC-ceEEEEecCHHHHHHHHHHH
Confidence 3444444443 34455555566666666521245799999999999999999998 44 78999999999999999999
Q ss_pred HhhcccCcccCCCeEEEeCCCCCCC---CCCCCccEEEEccCCCC-chH----H----HHHhcCCCcEEEEEeCCC
Q 028002 114 EKSAAAPLLKEGSLSVHVGDGRKGW---PEFAPYDAIHVGAAAPE-IPQ----A----LIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 114 ~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~V~~~~~~~~-~~~----~----~~~~Lk~gG~lv~~~~~~ 177 (215)
...+.. .+..+...|+...+ ...++||+|+.+++++. +.+ . -..+|+|+|.+++.....
T Consensus 87 ~~l~~~-----~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 87 KALGLE-----GEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHhCCc-----cceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 887654 57788888877432 22235999999999973 331 1 135699999999977643
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-10 Score=80.23 Aligned_cols=102 Identities=18% Similarity=0.211 Sum_probs=82.7
Q ss_pred ccCCcccchhHHHHHHHHHHHhcC--CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccC
Q 028002 43 IGYNATISAPHMHATCLQLLEENL--KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120 (215)
Q Consensus 43 ~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 120 (215)
....+.++.|++.+.|+..+..-. -.|+.++|+|||.|.++...+-. ++ ..++|+|+++.+++.+.+|..+..+
T Consensus 21 ~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~-~~-e~vlGfDIdpeALEIf~rNaeEfEv-- 96 (185)
T KOG3420|consen 21 LLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP-KN-ESVLGFDIDPEALEIFTRNAEEFEV-- 96 (185)
T ss_pred hhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC-CC-ceEEeeecCHHHHHHHhhchHHhhh--
Confidence 344677888998999988886322 24789999999999999555433 44 7899999999999999999988653
Q ss_pred cccCCCeEEEeCCCCCCCCCCCCccEEEEccCC
Q 028002 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 121 ~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
++++.+++..+..+..+.||.++.++++
T Consensus 97 -----qidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 97 -----QIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred -----hhheeeeeccchhccCCeEeeEEecCCC
Confidence 6699999998877776899999999887
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.2e-10 Score=83.55 Aligned_cols=100 Identities=27% Similarity=0.341 Sum_probs=75.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
...++..|+|..||.|.+++.+++. +....|+++|++|.+++..++++..+++. ..+.+..+|...... .+.|
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~-----~~i~~~~~D~~~~~~-~~~~ 170 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVE-----NRIEVINGDAREFLP-EGKF 170 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-T-----TTEEEEES-GGG----TT-E
T ss_pred cCCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCC-----CeEEEEcCCHHHhcC-cccc
Confidence 4678999999999999999999985 33378999999999999999999998875 678999999988766 4899
Q ss_pred cEEEEccCC--CCchHHHHHhcCCCcEEE
Q 028002 145 DAIHVGAAA--PEIPQALIDQLKPGGRMV 171 (215)
Q Consensus 145 D~V~~~~~~--~~~~~~~~~~Lk~gG~lv 171 (215)
|.|+++.+. .++++.+..++++||++-
T Consensus 171 drvim~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 171 DRVIMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred CEEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence 999998864 357789999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=81.61 Aligned_cols=112 Identities=22% Similarity=0.318 Sum_probs=91.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+.. .....+.||+|.=||+.++.+|..+.++++|+++|+++...+.+.+..+..++. ++++++++++
T Consensus 61 ~g~fl~~li~-~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-----~KI~~i~g~a 134 (237)
T KOG1663|consen 61 KGQFLQMLIR-LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-----HKITFIEGPA 134 (237)
T ss_pred HHHHHHHHHH-HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-----ceeeeeecch
Confidence 4444555432 445689999999999999999999988899999999999999998888877776 7999999988
Q ss_pred CCCCC------CCCCccEEEEccCCCC---chHHHHHhcCCCcEEEE
Q 028002 135 RKGWP------EFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 135 ~~~~~------~~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~ 172 (215)
.+.+. ..++||.+|.+..-.. ..+++.+++|+||+|++
T Consensus 135 ~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 135 LESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred hhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEE
Confidence 76332 3478999999987654 44788999999999998
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=89.28 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+.. ..++.+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|+..++. .++.+..+|+
T Consensus 45 ~~~v~~~~~~-~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~Da 116 (382)
T PRK04338 45 SVLVLRAFGP-KLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKDA 116 (382)
T ss_pred HHHHHHHHHh-hcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhhH
Confidence 3444444431 11346899999999999999988754 35899999999999999999988765 4567888887
Q ss_pred CCCCCCCCCccEEEEccCCC--CchHHHHHhcCCCcEEEEEeCC
Q 028002 135 RKGWPEFAPYDAIHVGAAAP--EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~--~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.........||+|++++.-. .+++.+...+++||.++++.-+
T Consensus 117 ~~~l~~~~~fD~V~lDP~Gs~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 117 NALLHEERKFDVVDIDPFGSPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred HHHHhhcCCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEEecC
Confidence 65433135799999987422 3446667889999999998443
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-09 Score=77.68 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=81.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
...++|||||+|..+..+++..++...+.++|+++.+++..++.+.-++ ..+++++.|....... ++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-------~~~~~V~tdl~~~l~~-~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-------VHIDVVRTDLLSGLRN-ESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-------CccceeehhHHhhhcc-CCccEEE
Confidence 5689999999999999999998888899999999999999888887765 3688999998887766 8999999
Q ss_pred EccCCC---------------------------CchHHHHHhcCCCcEEEEEeC
Q 028002 149 VGAAAP---------------------------EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 149 ~~~~~~---------------------------~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
.+++.. .+++.+-..|.|.|++++..-
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 888651 122335567899999998653
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.2e-10 Score=89.24 Aligned_cols=105 Identities=19% Similarity=0.162 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC---CCCC
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~ 143 (215)
..+.+|||+.|=||++++.++.. |. .+|+++|.|..+++.+++++.-++. ...+++++..|+.+.+. ..++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA-~~v~~VD~S~~al~~a~~N~~lNg~----~~~~~~~~~~Dvf~~l~~~~~~~~ 195 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GA-KEVVSVDSSKRALEWAKENAALNGL----DLDRHRFIQGDVFKFLKRLKKGGR 195 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TE-SEEEEEES-HHHHHHHHHHHHHTT-----CCTCEEEEES-HHHHHHHHHHTT-
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHcCC----CccceEEEecCHHHHHHHHhcCCC
Confidence 35789999999999999988764 43 6899999999999999999988774 33688999999876432 2368
Q ss_pred ccEEEEccCC------------CCchHHHHHhcCCCcEEEEEeCCC
Q 028002 144 YDAIHVGAAA------------PEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 144 ~D~V~~~~~~------------~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
||+|+++++. ..+...+.++|+|||.|++++++.
T Consensus 196 fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 196 FDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 9999999874 224456789999999999877664
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-09 Score=84.73 Aligned_cols=116 Identities=29% Similarity=0.403 Sum_probs=81.2
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc------Cccc
Q 028002 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA------PLLK 123 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------~~~~ 123 (215)
..|.+ ...++.+. ..++.+||+.|||.|.....++.+ | .+|+|+|+|+.+++.+.+........ ....
T Consensus 22 ~~p~L-~~~~~~l~--~~~~~rvLvPgCG~g~D~~~La~~-G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 95 (218)
T PF05724_consen 22 PNPAL-VEYLDSLA--LKPGGRVLVPGCGKGYDMLWLAEQ-G--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQ 95 (218)
T ss_dssp STHHH-HHHHHHHT--TSTSEEEEETTTTTSCHHHHHHHT-T--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEET
T ss_pred CCHHH-HHHHHhcC--CCCCCeEEEeCCCChHHHHHHHHC-C--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeec
Confidence 34443 33344444 677789999999999999999998 4 79999999999999885432211000 0123
Q ss_pred CCCeEEEeCCCCCCCCCC-CCccEEEEccCCCCch--------HHHHHhcCCCcEEE
Q 028002 124 EGSLSVHVGDGRKGWPEF-APYDAIHVGAAAPEIP--------QALIDQLKPGGRMV 171 (215)
Q Consensus 124 ~~~v~~~~~d~~~~~~~~-~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv 171 (215)
..++++.++|+....+.. ++||+|+....+..++ +.+.++|+|||.++
T Consensus 96 ~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 96 AGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp TSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred CCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 357899999998754432 5799999998886655 46889999999943
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-09 Score=86.65 Aligned_cols=107 Identities=26% Similarity=0.367 Sum_probs=85.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC---CCC
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WPE 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~ 140 (215)
...+|.+|||++++.|+=|..++..+... ..|+++|.++..++..+++++..+. .++.+...|.... ...
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------RNVIVVNKDARRLAELLPG 226 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------CceEEEecccccccccccc
Confidence 47889999999999999999999997543 4569999999999999999999776 5777888776532 233
Q ss_pred CCCccEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 141 FAPYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 141 ~~~~D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.++||.|+++.++. .+++.+.++|||||.|++++++.
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 23699999998762 12245788999999999998874
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-09 Score=81.24 Aligned_cols=116 Identities=22% Similarity=0.164 Sum_probs=78.1
Q ss_pred HHHHHHHhcCCCCCE-EEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 57 TCLQLLEENLKPGMH-ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~-vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
-+++.|...+.+..+ |||||||||..+.++++.+ |.....-.|.++.........+...+..+....-.+++...+..
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~ 91 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWP 91 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCc
Confidence 344444444555554 9999999999999999997 66788999999998877777776655532221112222221111
Q ss_pred CCC---CCCCCccEEEEccCCC--------CchHHHHHhcCCCcEEEEE
Q 028002 136 KGW---PEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 136 ~~~---~~~~~~D~V~~~~~~~--------~~~~~~~~~Lk~gG~lv~~ 173 (215)
... ...++||.|++...+| .++..+.++|++||.|++-
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred cccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 110 0236899999998774 3456788999999999984
|
The function of this family is unknown. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.5e-09 Score=81.65 Aligned_cols=100 Identities=24% Similarity=0.284 Sum_probs=81.4
Q ss_pred cccCCcccc-hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccC
Q 028002 42 AIGYNATIS-APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120 (215)
Q Consensus 42 ~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 120 (215)
..+.|+|+. .|.+...+++.-. +++.+.|||+|.|||.++..+.... .+|+++|+++.++....++.+....+
T Consensus 33 nkd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~- 106 (315)
T KOG0820|consen 33 NKDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKS- 106 (315)
T ss_pred ccccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCcc-
Confidence 345678765 5666777777765 8999999999999999999999985 89999999999999999988765543
Q ss_pred cccCCCeEEEeCCCCCCCCCCCCccEEEEccCC
Q 028002 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 121 ~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
..+.++.+|...... ..||.++++.+.
T Consensus 107 ----~kLqV~~gD~lK~d~--P~fd~cVsNlPy 133 (315)
T KOG0820|consen 107 ----GKLQVLHGDFLKTDL--PRFDGCVSNLPY 133 (315)
T ss_pred ----ceeeEEecccccCCC--cccceeeccCCc
Confidence 688999999877543 358999987654
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-09 Score=83.22 Aligned_cols=112 Identities=25% Similarity=0.339 Sum_probs=75.5
Q ss_pred HHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc-Ccc---------------
Q 028002 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA-PLL--------------- 122 (215)
Q Consensus 59 l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~--------------- 122 (215)
+..|....-.+..+|||||-+|.++..+++.+++ ..+.|+|+++..++.|++.++..... ..+
T Consensus 49 Lk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~i 127 (288)
T KOG2899|consen 49 LKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPI 127 (288)
T ss_pred hhhccccccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccc
Confidence 3333333455678999999999999999999987 67999999999999999987532110 000
Q ss_pred --------------------cCCCeEEEeCCCCCCCCCCCCccEEEEccCC------------CCchHHHHHhcCCCcEE
Q 028002 123 --------------------KEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA------------PEIPQALIDQLKPGGRM 170 (215)
Q Consensus 123 --------------------~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~------------~~~~~~~~~~Lk~gG~l 170 (215)
...|..+...|+. +.....||+|+|-... ..++..+.++|.|||+|
T Consensus 128 s~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiL 205 (288)
T KOG2899|consen 128 SQRNEADRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGIL 205 (288)
T ss_pred cccccccccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEE
Confidence 0011111111121 1223579999887643 23456789999999999
Q ss_pred EEE
Q 028002 171 VIP 173 (215)
Q Consensus 171 v~~ 173 (215)
++.
T Consensus 206 vvE 208 (288)
T KOG2899|consen 206 VVE 208 (288)
T ss_pred EEc
Confidence 994
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-09 Score=86.21 Aligned_cols=82 Identities=20% Similarity=0.284 Sum_probs=62.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh-cccCcccCCCeEEEeC-CCCC---CC-CCC
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHVG-DGRK---GW-PEF 141 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~v~~~~~-d~~~---~~-~~~ 141 (215)
++.++||||||+|.+...++... +..+++++|+++.+++.|++++..+ ++. .++.+... +... .. ...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~-----~~I~~~~~~~~~~i~~~i~~~~ 187 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLN-----GAIRLRLQKDSKAIFKGIIHKN 187 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCc-----CcEEEEEccchhhhhhcccccC
Confidence 45799999999998888887764 4479999999999999999999987 454 46777542 2222 11 123
Q ss_pred CCccEEEEccCCCC
Q 028002 142 APYDAIHVGAAAPE 155 (215)
Q Consensus 142 ~~~D~V~~~~~~~~ 155 (215)
+.||+|+|++++..
T Consensus 188 ~~fDlivcNPPf~~ 201 (321)
T PRK11727 188 ERFDATLCNPPFHA 201 (321)
T ss_pred CceEEEEeCCCCcC
Confidence 68999999999854
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.8e-10 Score=85.13 Aligned_cols=95 Identities=12% Similarity=0.081 Sum_probs=66.5
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEE
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 149 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~ 149 (215)
..++|+|||+|..+..++... .+|+++|+|+.|++.+++........ ....+...+.......+++.|+|++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~-----t~~~ms~~~~v~L~g~e~SVDlI~~ 106 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCH-----TPSTMSSDEMVDLLGGEESVDLITA 106 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCccccc-----CCccccccccccccCCCcceeeehh
Confidence 389999999998888888886 79999999999999987643221110 1222222223333334589999999
Q ss_pred ccCCCC-----chHHHHHhcCCCcEEEE
Q 028002 150 GAAAPE-----IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 150 ~~~~~~-----~~~~~~~~Lk~gG~lv~ 172 (215)
...+|+ +.+.+.++||+.|-++.
T Consensus 107 Aqa~HWFdle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 107 AQAVHWFDLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred hhhHHhhchHHHHHHHHHHcCCCCCEEE
Confidence 887764 45778999998885544
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.1e-09 Score=76.14 Aligned_cols=112 Identities=19% Similarity=0.249 Sum_probs=86.7
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE
Q 028002 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 129 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~ 129 (215)
+++...+.|...+. ...+..|||+|.|||.++..+.++.-....++++|.|++......+.+ +.+.+
T Consensus 32 sSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----------p~~~i 98 (194)
T COG3963 32 SSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----------PGVNI 98 (194)
T ss_pred CcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----------CCccc
Confidence 44445667777766 777889999999999999999988645589999999999988877654 45668
Q ss_pred EeCCCCCCC-----CCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028002 130 HVGDGRKGW-----PEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 130 ~~~d~~~~~-----~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
+.+|+.... .....||.|++.-++..+ ++.+...|.+||.++.-.
T Consensus 99 i~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 99 INGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 888876532 123579999999887543 467888999999988643
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=86.67 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=79.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~ 146 (215)
...+||.+|+|.|..+..+++.. +..+++++|+++.+++.|++.+..... .+..++++++.+|+..... ..++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~--~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNRE--AFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccc--cccCCceEEEEChhHHHHhhCCCCccE
Confidence 34789999999999999888863 347899999999999999998754321 1334799999999876543 2368999
Q ss_pred EEEccCCC------------CchH-HHHHhcCCCcEEEEEe
Q 028002 147 IHVGAAAP------------EIPQ-ALIDQLKPGGRMVIPV 174 (215)
Q Consensus 147 V~~~~~~~------------~~~~-~~~~~Lk~gG~lv~~~ 174 (215)
|+++..-+ ++.+ .+.+.|+|||++++..
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 99884321 2345 6788999999998754
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=87.79 Aligned_cols=100 Identities=21% Similarity=0.135 Sum_probs=77.6
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
++-.+..|||+|||+|.++...|+. |. .+|+++|.|.-+ +.|.+.+..++.. +.++++++.+.+...+.++.
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akA-GA-~~V~aVe~S~ia-~~a~~iv~~N~~~-----~ii~vi~gkvEdi~LP~eKV 128 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKA-GA-RKVYAVEASSIA-DFARKIVKDNGLE-----DVITVIKGKVEDIELPVEKV 128 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHh-Cc-ceEEEEechHHH-HHHHHHHHhcCcc-----ceEEEeecceEEEecCccce
Confidence 3556889999999999999999998 54 799999987665 9999999998876 57899999887754345899
Q ss_pred cEEEEccCCCC-----chH----HHHHhcCCCcEEEE
Q 028002 145 DAIHVGAAAPE-----IPQ----ALIDQLKPGGRMVI 172 (215)
Q Consensus 145 D~V~~~~~~~~-----~~~----~~~~~Lk~gG~lv~ 172 (215)
|+|++--.-.. +++ +=-+.|+|||.++=
T Consensus 129 DiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 129 DIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred eEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 99987643222 222 23478999998753
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.7e-09 Score=78.35 Aligned_cols=106 Identities=25% Similarity=0.319 Sum_probs=69.0
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CC
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PE 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~ 140 (215)
...++.+|||+|||+|..++.+++..+ ..+|+..|.++ .++.++.++..+.. ....++.+..-++.+.. ..
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~ 116 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLE 116 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS
T ss_pred hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccc
Confidence 356678999999999999999998842 37999999999 99999999887652 11257788887775532 13
Q ss_pred CCCccEEEEccCCC------CchHHHHHhcCCCcEEEEEeC
Q 028002 141 FAPYDAIHVGAAAP------EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 141 ~~~~D~V~~~~~~~------~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
..+||+|++...+. .+.+-+.++|+++|.+++...
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 36899999887653 344667889999999777654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=81.61 Aligned_cols=104 Identities=21% Similarity=0.289 Sum_probs=84.6
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC-CCccEEE
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF-APYDAIH 148 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~D~V~ 148 (215)
.+||-||-|.|..+..+++.. +-.+++.+|+++..++.+++.+....... ..++++++.+|..+..... .+||+|+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~--~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGA--DDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCccccc--CCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 599999999999999999985 45899999999999999999987654221 1479999999988765432 4799999
Q ss_pred EccCCC----------CchHHHHHhcCCCcEEEEEeCC
Q 028002 149 VGAAAP----------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 149 ~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
++..-+ .+.+.+.+.|+++|+++..+.+
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 887543 3447899999999999998444
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=79.43 Aligned_cols=96 Identities=18% Similarity=0.134 Sum_probs=77.9
Q ss_pred Ccc-cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028002 46 NAT-ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 46 ~~~-~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
|++ +..+.+...+++... +.++..|||||+|.|.+|..+++.. .+|+++|+|+.+++..++.+.. .
T Consensus 9 GQnFL~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~--------~ 75 (259)
T COG0030 9 GQNFLIDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAP--------Y 75 (259)
T ss_pred ccccccCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhccc--------c
Confidence 443 456667788888876 7778999999999999999999985 6899999999999999887652 2
Q ss_pred CCeEEEeCCCCCCCCCCC-CccEEEEccCCC
Q 028002 125 GSLSVHVGDGRKGWPEFA-PYDAIHVGAAAP 154 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~~~~-~~D~V~~~~~~~ 154 (215)
.+++++.+|+.......- .++.|+++-+..
T Consensus 76 ~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 76 DNLTVINGDALKFDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred cceEEEeCchhcCcchhhcCCCEEEEcCCCc
Confidence 699999999987655411 688999888763
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.91 E-value=9e-09 Score=82.27 Aligned_cols=100 Identities=23% Similarity=0.268 Sum_probs=79.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
.+..|||+|||+|.++...+.. |. .+|+++|. .+|.+.|++.+..+.+. +++.++.+.+++...+ ++.|+|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA-~~vYAvEA-S~MAqyA~~Lv~~N~~~-----~rItVI~GKiEdieLP-Ek~Dvi 247 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GA-KKVYAVEA-SEMAQYARKLVASNNLA-----DRITVIPGKIEDIELP-EKVDVI 247 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-Cc-ceEEEEeh-hHHHHHHHHHHhcCCcc-----ceEEEccCccccccCc-hhccEE
Confidence 4678999999999999999887 55 78999996 56889999988887655 7999999999886655 789999
Q ss_pred EEccCCC-----CchH---HHHHhcCCCcEEEEEeCC
Q 028002 148 HVGAAAP-----EIPQ---ALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 148 ~~~~~~~-----~~~~---~~~~~Lk~gG~lv~~~~~ 176 (215)
++-+.-. .+++ -+++.|+|.|.++=++++
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gd 284 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGD 284 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccc
Confidence 9876532 2222 256899999998765544
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-08 Score=79.36 Aligned_cols=115 Identities=12% Similarity=-0.016 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028002 54 MHATCLQLLEEN-LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 54 ~~~~~l~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
+..+++....-. -+...+||-+|.|.|..+..+++. . .+|+.+|+++.+++.+++.+....- .+..++++++..
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~~ 131 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQ 131 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEeeh
Confidence 455555543211 133489999999999999999987 2 5999999999999999997766432 255678888762
Q ss_pred CCCCCCCCCCCccEEEEccCC-CCchHHHHHhcCCCcEEEEEeCC
Q 028002 133 DGRKGWPEFAPYDAIHVGAAA-PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 133 d~~~~~~~~~~~D~V~~~~~~-~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
..+ . ..++||+|+++... .++.+.+.+.|+|||.++.-..+
T Consensus 132 -~~~-~-~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 132 -LLD-L-DIKKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred -hhh-c-cCCcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCCC
Confidence 111 1 12689999999544 45678899999999999995544
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.6e-09 Score=83.77 Aligned_cols=89 Identities=18% Similarity=0.296 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
+..++++.+. +.++..++|++||.|+.+..+++.+++.++|+|+|.++.+++.+++++.. . .++.+++++
T Consensus 7 ll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~------~ri~~i~~~ 76 (296)
T PRK00050 7 LLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F------GRFTLVHGN 76 (296)
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C------CcEEEEeCC
Confidence 5788888887 77888999999999999999999976568999999999999999988754 1 589999999
Q ss_pred CCCCC---CC-CCCccEEEEccC
Q 028002 134 GRKGW---PE-FAPYDAIHVGAA 152 (215)
Q Consensus 134 ~~~~~---~~-~~~~D~V~~~~~ 152 (215)
..+.. .. ..++|.|+++..
T Consensus 77 f~~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 77 FSNLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred HHHHHHHHHcCCCccCEEEECCC
Confidence 87532 11 127999987763
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.5e-09 Score=82.52 Aligned_cols=105 Identities=26% Similarity=0.337 Sum_probs=85.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 143 (215)
..++..|||++++.|+-+..++..++..+.+++.|+++..+...+++++..+. .++.+...|..... .....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHHHHHHHHTTT
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeeccccccccccccc
Confidence 78899999999999999999999987679999999999999999999988765 58888877765541 12246
Q ss_pred ccEEEEccCCCC----------------------------chHHHHHhc----CCCcEEEEEeCC
Q 028002 144 YDAIHVGAAAPE----------------------------IPQALIDQL----KPGGRMVIPVGN 176 (215)
Q Consensus 144 ~D~V~~~~~~~~----------------------------~~~~~~~~L----k~gG~lv~~~~~ 176 (215)
||.|+++.++.. +++.+.+.+ ||||++++++++
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 999999987621 224577899 999999999875
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.5e-09 Score=79.48 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=69.5
Q ss_pred EEEEEcCCccHHHHHHHHHhCCC--CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC----CCCCCCCc
Q 028002 71 HALDIGSGTGYLTACFALMVGPQ--GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----GWPEFAPY 144 (215)
Q Consensus 71 ~vLdiG~G~G~~~~~l~~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~~ 144 (215)
+|||+|||.|.....+.+. .++ -+++++|.|+.+++..+++..... .+......|+.. ..+..+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~-~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-------~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKT-SPNNRLKVYACDFSPRAIELVKKSSGYDE-------SRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred hheeeccCCCcccchhhhc-CCCCCeEEEEcCCChHHHHHHHhccccch-------hhhcccceeccchhccCCCCcCcc
Confidence 7999999999999999887 354 789999999999999887643221 233333334332 22334789
Q ss_pred cEEEEccCCCC--------chHHHHHhcCCCcEEEEE
Q 028002 145 DAIHVGAAAPE--------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 145 D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~ 173 (215)
|.|.+...+.+ .++++.++|||||.|++-
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 99877665543 446899999999999984
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=77.63 Aligned_cols=98 Identities=20% Similarity=0.304 Sum_probs=62.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.++.++||+|||||.++..+++. |. .+|+++|.++.++... +........+...|+. ..+..+.+++...+|+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga-~~v~avD~~~~~l~~~---l~~~~~v~~~~~~ni~--~~~~~~~~~d~~~~Dv 146 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GA-KEVYGVDVGYNQLAEK---LRQDERVKVLERTNIR--YVTPADIFPDFATFDV 146 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHHH---HhcCCCeeEeecCCcc--cCCHhHcCCCceeeeE
Confidence 46789999999999999999987 44 7899999999877651 2211100001112222 1111122222246777
Q ss_pred EEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 147 IHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 147 V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
++++... ++..+.+.|++ |.+++.+
T Consensus 147 sfiS~~~--~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 147 SFISLIS--ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred EEeehHh--HHHHHHHHhCc-CeEEEEc
Confidence 7666544 67889999999 8887755
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-08 Score=81.02 Aligned_cols=102 Identities=25% Similarity=0.295 Sum_probs=88.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+|.+|+|..||.|.+++.+|+.. . .+|+++|+++.+++..++++.-+++. ..+..+.+|.....+..+.+|
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g-~-~~V~A~diNP~A~~~L~eNi~LN~v~-----~~v~~i~gD~rev~~~~~~aD 258 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKG-R-PKVYAIDINPDAVEYLKENIRLNKVE-----GRVEPILGDAREVAPELGVAD 258 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcC-C-ceEEEEecCHHHHHHHHHHHHhcCcc-----ceeeEEeccHHHhhhccccCC
Confidence 5669999999999999999999984 3 33999999999999999999998875 458999999988766557899
Q ss_pred EEEEccCC--CCchHHHHHhcCCCcEEEEEe
Q 028002 146 AIHVGAAA--PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~--~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
.|+.+.+. +++...+.+.+++||.+-+-.
T Consensus 259 rIim~~p~~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 259 RIIMGLPKSAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred EEEeCCCCcchhhHHHHHHHhhcCcEEEEEe
Confidence 99998875 678889999999999988743
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.1e-09 Score=77.09 Aligned_cols=75 Identities=21% Similarity=0.226 Sum_probs=56.5
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC--C-CccEE
Q 028002 71 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--A-PYDAI 147 (215)
Q Consensus 71 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~-~~D~V 147 (215)
.|+|+.||.|+.++.+|+.+ .+|+++|+++..++.++.|++..++. ++++++++|+.+..... . .+|+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~-----~~I~~i~gD~~~~~~~~~~~~~~D~v 73 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVA-----DNIDFICGDFFELLKRLKSNKIFDVV 73 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-G-----GGEEEEES-HHHHGGGB------SEE
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEeCCHHHHHhhccccccccEE
Confidence 69999999999999999986 78999999999999999999998865 79999999987643321 1 28999
Q ss_pred EEccCC
Q 028002 148 HVGAAA 153 (215)
Q Consensus 148 ~~~~~~ 153 (215)
+++++.
T Consensus 74 FlSPPW 79 (163)
T PF09445_consen 74 FLSPPW 79 (163)
T ss_dssp EE---B
T ss_pred EECCCC
Confidence 998864
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-08 Score=76.29 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=67.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
...++||||+|.|..+..++..+ .+|++.|.|+.|....++ . ..++...+--. ....+||+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~----k---------g~~vl~~~~w~--~~~~~fDvI 155 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSK----K---------GFTVLDIDDWQ--QTDFKFDVI 155 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHh----C---------CCeEEehhhhh--ccCCceEEE
Confidence 35689999999999999999987 789999999998655443 2 33343332211 122589999
Q ss_pred EEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028002 148 HVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 148 ~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
.|-..++. +++.+++.|+|+|++++.+
T Consensus 156 scLNvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 156 SCLNVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred eehhhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 99887743 5578999999999999864
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.8e-08 Score=77.32 Aligned_cols=91 Identities=23% Similarity=0.339 Sum_probs=73.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+..+|+|+|+|+|.++..+++.. |+.+++.+|. +..++.+++ . ++++++.+|+.+..+ . +|
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---~---------~rv~~~~gd~f~~~P--~-~D 160 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---A---------DRVEFVPGDFFDPLP--V-AD 160 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---T---------TTEEEEES-TTTCCS--S-ES
T ss_pred ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---c---------cccccccccHHhhhc--c-cc
Confidence 4556799999999999999999995 7789999998 778888776 1 799999999985444 3 99
Q ss_pred EEEEccCCCCch--------HHHHHhcCCC--cEEEEE
Q 028002 146 AIHVGAAAPEIP--------QALIDQLKPG--GRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~--------~~~~~~Lk~g--G~lv~~ 173 (215)
+++....++... +++.+.|+|| |+|++.
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 999998887644 5788999999 999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.6e-09 Score=79.44 Aligned_cols=107 Identities=27% Similarity=0.281 Sum_probs=82.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~ 143 (215)
++.+.+|||.+.|-|+.++..+++ |. ..|+.+|.++..++.|+-| .++.......++++.+|+.+... ++++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r-GA-~~VitvEkdp~VLeLa~lN----PwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER-GA-IHVITVEKDPNVLELAKLN----PWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc-CC-cEEEEEeeCCCeEEeeccC----CCCccccccccEEecccHHHHHhcCCccc
Confidence 456899999999999999999988 43 4899999999999988642 22322333478999999876433 3478
Q ss_pred ccEEEEccCC---------CCchHHHHHhcCCCcEEEEEeCCCc
Q 028002 144 YDAIHVGAAA---------PEIPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 144 ~D~V~~~~~~---------~~~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
||+|+-+++- ..+.+++.++|||||.|+--+++.-
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 9999988763 2355789999999999998776643
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-08 Score=81.52 Aligned_cols=125 Identities=21% Similarity=0.211 Sum_probs=81.1
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHh------CCCCeEEEEecChHHHHHHHHHHHhhccc
Q 028002 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMV------GPQGRAVGVEHIPELVVSSIQNIEKSAAA 119 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~------~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 119 (215)
|++.+...+...|.+.+. ..++.+|+|.+||+|.+...+.+.+ ....+++|+|+++.++..|+-++.-.+..
T Consensus 26 G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp GGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred ceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 445455555666666664 6777899999999999998887743 13478999999999999998777544432
Q ss_pred CcccCCCeEEEeCCCCCCCCC--CCCccEEEEccCCCCc---------------------------hHHHHHhcCCCcEE
Q 028002 120 PLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAPEI---------------------------PQALIDQLKPGGRM 170 (215)
Q Consensus 120 ~~~~~~~v~~~~~d~~~~~~~--~~~~D~V~~~~~~~~~---------------------------~~~~~~~Lk~gG~l 170 (215)
.....+..+|....... ...||+|++++++-.. +..+.+.|++||++
T Consensus 104 ----~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 104 ----NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRA 179 (311)
T ss_dssp ----CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred ----cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccce
Confidence 23456788886543332 3689999999876322 24577899999998
Q ss_pred EEEeCC
Q 028002 171 VIPVGN 176 (215)
Q Consensus 171 v~~~~~ 176 (215)
.+.+|+
T Consensus 180 ~~Ilp~ 185 (311)
T PF02384_consen 180 AIILPN 185 (311)
T ss_dssp EEEEEH
T ss_pred eEEecc
Confidence 876654
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-08 Score=85.83 Aligned_cols=97 Identities=26% Similarity=0.268 Sum_probs=69.3
Q ss_pred CCEEEEEcCCccHHHHHHHHHh---CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 69 GMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+..|+|+|||+|.++...++.. +...+|+++|.++.+....++.++.++.. ++|+++.+|..+...+ .++|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~-----~~V~vi~~d~r~v~lp-ekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG-----DKVTVIHGDMREVELP-EKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT-----TTEEEEES-TTTSCHS-S-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC-----CeEEEEeCcccCCCCC-Ccee
Confidence 4689999999999988776552 23379999999999888877776666654 7899999999886655 6999
Q ss_pred EEEEcc----CCCCc----hHHHHHhcCCCcEEE
Q 028002 146 AIHVGA----AAPEI----PQALIDQLKPGGRMV 171 (215)
Q Consensus 146 ~V~~~~----~~~~~----~~~~~~~Lk~gG~lv 171 (215)
+|++-. ...++ +....+.|||+|.++
T Consensus 261 IIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 997543 23333 345568899998764
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-07 Score=82.34 Aligned_cols=103 Identities=12% Similarity=0.057 Sum_probs=71.8
Q ss_pred CCcccchhHHHHHHHHHHHhcCC-----CCCEEEEEcCCccHHHHHHHHHhCC-------CCeEEEEecChHHHHHHHHH
Q 028002 45 YNATISAPHMHATCLQLLEENLK-----PGMHALDIGSGTGYLTACFALMVGP-------QGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 45 ~~~~~~~~~~~~~~l~~l~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~~-------~~~v~~~D~s~~~~~~a~~~ 112 (215)
.|++.+.+.+...|++.+..... ...+|||.|||+|.+...++..+.. ...++|+|+++.++..++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 36677777788888887642222 3468999999999999988876521 25789999999999999998
Q ss_pred HHhhcccCcccCCCeEEEeCCCCCC---C--CCCCCccEEEEccCC
Q 028002 113 IEKSAAAPLLKEGSLSVHVGDGRKG---W--PEFAPYDAIHVGAAA 153 (215)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~d~~~~---~--~~~~~~D~V~~~~~~ 153 (215)
+...+. ..+.+...|.... . ...+.||+|+++++.
T Consensus 83 l~~~~~------~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 83 LGEFAL------LEINVINFNSLSYVLLNIESYLDLFDIVITNPPY 122 (524)
T ss_pred HhhcCC------CCceeeecccccccccccccccCcccEEEeCCCc
Confidence 876431 1344454443321 1 112579999999875
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-07 Score=67.39 Aligned_cols=91 Identities=12% Similarity=0.102 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCCccH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCc
Q 028002 67 KPGMHALDIGSGTGY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~ 144 (215)
.++.+++|+|||+|. .+..+++. | ..|+++|+++..++.++++ .+.++.+|..+.... -..+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~-G--~~ViaIDi~~~aV~~a~~~-------------~~~~v~dDlf~p~~~~y~~a 78 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES-G--FDVIVIDINEKAVEKAKKL-------------GLNAFVDDLFNPNLEIYKNA 78 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHh-------------CCeEEECcCCCCCHHHHhcC
Confidence 345789999999996 77777765 4 7999999999988887653 467889998765443 3679
Q ss_pred cEEEEccCCCCchHHHHHhcCC-CcEEEEE
Q 028002 145 DAIHVGAAAPEIPQALIDQLKP-GGRMVIP 173 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~-gG~lv~~ 173 (215)
|+|++.-+..++...+.++-+. |.-+++.
T Consensus 79 ~liysirpp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 79 KLIYSIRPPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999998888777766544 4555553
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.1e-08 Score=82.05 Aligned_cols=148 Identities=18% Similarity=0.187 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe
Q 028002 52 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 131 (215)
Q Consensus 52 ~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~ 131 (215)
+-++..+-+.+. +..+..++|+.||||.+++.+++.. .+|+|+|+++.+++.|+++...++. .|.+|++
T Consensus 369 evLys~i~e~~~--l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngi------sNa~Fi~ 437 (534)
T KOG2187|consen 369 EVLYSTIGEWAG--LPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGI------SNATFIV 437 (534)
T ss_pred HHHHHHHHHHhC--CCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCc------cceeeee
Confidence 334445555554 7778999999999999999999876 7999999999999999999988876 6999999
Q ss_pred CCCCCCCCCC-----CCcc-EEEEccCCCC----chHHHHHhcCCCcEEEEEeCCCc------eeE-EEEEEcCCCceEE
Q 028002 132 GDGRKGWPEF-----APYD-AIHVGAAAPE----IPQALIDQLKPGGRMVIPVGNIF------QDL-KVVDKNQDGSLSI 194 (215)
Q Consensus 132 ~d~~~~~~~~-----~~~D-~V~~~~~~~~----~~~~~~~~Lk~gG~lv~~~~~~~------~~~-~~~~~~~~~~~~~ 194 (215)
+.+++..+.. ++=+ +++.+++-.. +++.++++-++.=.++++++-.. ..+ ..-.+...+.|+.
T Consensus 438 gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~~~~~~~~~g~fr~ 517 (534)
T KOG2187|consen 438 GQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCSSPKYRLKKGFFRL 517 (534)
T ss_pred cchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHHhhhhHHHhhcCccccccccccce
Confidence 9766544321 2334 4455654433 23444444456666777664331 111 2223345677888
Q ss_pred EeeceEEEeecccCcc
Q 028002 195 WSETSVRYVPLTSRDA 210 (215)
Q Consensus 195 ~~~~~~~~~p~~~~~~ 210 (215)
.....+...|-|++-+
T Consensus 518 ~~~~~VDlfP~T~h~E 533 (534)
T KOG2187|consen 518 VKAVGVDLFPHTPHCE 533 (534)
T ss_pred eeeeecccCCCCCcCC
Confidence 8888888888887654
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-07 Score=70.48 Aligned_cols=112 Identities=27% Similarity=0.372 Sum_probs=77.6
Q ss_pred HHHHHHHHH-hcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 55 HATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 55 ~~~~l~~l~-~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
.+.++.-+. .++.+|.+||-+|+++|.....++.-.++++.|+++|.++......-.-.+. + .|+-.+.+|
T Consensus 59 aAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-R-------~NIiPIl~D 130 (229)
T PF01269_consen 59 AAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-R-------PNIIPILED 130 (229)
T ss_dssp HHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-S-------TTEEEEES-
T ss_pred HHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-C-------Cceeeeecc
Confidence 344433332 3478899999999999999999999999889999999999665444332222 1 699999999
Q ss_pred CCCCC---CCCCCccEEEEccCCCC----chHHHHHhcCCCcEEEEEe
Q 028002 134 GRKGW---PEFAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 134 ~~~~~---~~~~~~D~V~~~~~~~~----~~~~~~~~Lk~gG~lv~~~ 174 (215)
+.... .--+..|+|+++-.-+. +..++...||+||.+++++
T Consensus 131 Ar~P~~Y~~lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 131 ARHPEKYRMLVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp TTSGGGGTTTS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCChHHhhcccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 87531 12268999999977654 3356778999999999876
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-08 Score=79.22 Aligned_cols=106 Identities=29% Similarity=0.356 Sum_probs=79.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CC-Cc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FA-PY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~-~~ 144 (215)
....+||-||-|.|..+..+.+. .+..+++++|+++..++.|++.+...... ...++++++.+|+...... .+ +|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-E
T ss_pred CCcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCcc
Confidence 34689999999999999999876 33479999999999999999987654322 3447999999998654321 23 79
Q ss_pred cEEEEccCCC----------CchHHHHHhcCCCcEEEEEeC
Q 028002 145 DAIHVGAAAP----------EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 145 D~V~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
|+|+.+...+ ++.+.+.+.|+|+|++++...
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 9999876542 344678999999999998653
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=78.99 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=80.7
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCccEEE
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAIH 148 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~V~ 148 (215)
.+|||+.||+|..++.+++..+...+|+++|+++.+++.+++|++.++. .++.+..+|+...... ...||+|+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~l~~~~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANVLRYRNRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHHHHHhCCCCCEEE
Confidence 5899999999999999998742236899999999999999999987654 4688888887754332 25799999
Q ss_pred EccCCC--CchHHHHHhcCCCcEEEEEeC
Q 028002 149 VGAAAP--EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 149 ~~~~~~--~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
.++.-. .+++.+.+.+++||.|+++.-
T Consensus 120 lDPfGs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 120 IDPFGTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred eCCCCCcHHHHHHHHHhcccCCEEEEEec
Confidence 987322 466788899999999999853
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=81.73 Aligned_cols=103 Identities=20% Similarity=0.130 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC--CCCCCCCcc
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~D 145 (215)
.+..+||||||.|.+...+|.. .|+..++|+|++...+..+.+.....+. .|+.++..|+.. .....+++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~-~p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~~~~~~~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKM-NPDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDLILNDLPNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHh-CCCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHHHHHhcCccccc
Confidence 4568999999999999999999 4779999999999998888877766544 588888777632 122337899
Q ss_pred EEEEccCCCC--------------chHHHHHhcCCCcEEEEEeCCC
Q 028002 146 AIHVGAAAPE--------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~~~~--------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.|+...+-++ +++.+.+.|+|||.+.+.+...
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE 465 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 9998887643 3457899999999999988764
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.7e-08 Score=76.47 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=83.3
Q ss_pred ccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccH----HHHHHHHHhCC---CCeEEEEecChHHHHHHHHHHHh
Q 028002 43 IGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGY----LTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEK 115 (215)
Q Consensus 43 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~----~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~ 115 (215)
++...+...|.....+.+.+.. ....-+|+..||+||. +++.+...++. +.+|+|+|+|+.+++.|++....
T Consensus 91 ineT~FFRd~~~f~~L~~~~~~-~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~ 169 (287)
T PRK10611 91 TNLTAFFREAHHFPILAEHARR-RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYR 169 (287)
T ss_pred CCCCCccCCcHHHHHHHHHHHh-cCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCC
Confidence 3333344444444444444431 2234799999999994 33334443221 35799999999999999875321
Q ss_pred hc--------------------------ccCcccCCCeEEEeCCCCCC-CCCCCCccEEEEccCCCC--------chHHH
Q 028002 116 SA--------------------------AAPLLKEGSLSVHVGDGRKG-WPEFAPYDAIHVGAAAPE--------IPQAL 160 (215)
Q Consensus 116 ~~--------------------------~~~~~~~~~v~~~~~d~~~~-~~~~~~~D~V~~~~~~~~--------~~~~~ 160 (215)
.. +.+.+ ...+.|...|..+. ++..+.||+|+|...+.+ +++.+
T Consensus 170 ~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~l-r~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l 248 (287)
T PRK10611 170 QEELKTLSPQQLQRYFMRGTGPHEGLVRVRQEL-ANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRF 248 (287)
T ss_pred HHHHhcCCHHHHHHHcccccCCCCceEEEChHH-HccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHH
Confidence 00 00000 15678888888763 333478999999877644 34678
Q ss_pred HHhcCCCcEEEEEeCCC
Q 028002 161 IDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 161 ~~~Lk~gG~lv~~~~~~ 177 (215)
.+.|+|||+|++-....
T Consensus 249 ~~~L~pgG~L~lG~sEs 265 (287)
T PRK10611 249 VPLLKPDGLLFAGHSEN 265 (287)
T ss_pred HHHhCCCcEEEEeCccc
Confidence 89999999998855443
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-07 Score=78.23 Aligned_cols=105 Identities=22% Similarity=0.252 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---CCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~ 142 (215)
++++.+|||.++..|.-+.++|..+...+.+++.|.+...+...+.++...++ .+..++..|..++. .. +
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~ef~~~~~~-~ 311 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGREFPEKEFP-G 311 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCcccccccccC-c
Confidence 68899999999999999999999998889999999999999999999998775 57778888876542 22 3
Q ss_pred CccEEEEccCCCC----------------------------chHHHHHhcCCCcEEEEEeCCC
Q 028002 143 PYDAIHVGAAAPE----------------------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 143 ~~D~V~~~~~~~~----------------------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+||.|+.++++.. ++..+..++++||+|++++++.
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 7999998887632 2234678899999999998763
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.8e-07 Score=72.95 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=74.4
Q ss_pred CCEEEEEcCCcc----HHHHHHHHHhC----CCCeEEEEecChHHHHHHHHHHHh-----hcccC--------ccc----
Q 028002 69 GMHALDIGSGTG----YLTACFALMVG----PQGRAVGVEHIPELVVSSIQNIEK-----SAAAP--------LLK---- 123 (215)
Q Consensus 69 ~~~vLdiG~G~G----~~~~~l~~~~~----~~~~v~~~D~s~~~~~~a~~~~~~-----~~~~~--------~~~---- 123 (215)
.-+|+..||+|| ++++.+.+.++ ..-+|+|.|+|..+++.|+.-.-. .++.. ...
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 578999999999 35555556553 247999999999999999764432 11100 000
Q ss_pred ------CCCeEEEeCCCCCCCCCCCCccEEEEccCC--------CCchHHHHHhcCCCcEEEEE
Q 028002 124 ------EGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 124 ------~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~--------~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...|.|...|.....+..+.||+|+|-.++ ..+.+.+...|+|||+|++=
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 146677777776655344789999999886 34557789999999999993
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=70.65 Aligned_cols=113 Identities=25% Similarity=0.283 Sum_probs=85.2
Q ss_pred HHHHHHHHh--cCCCCC-EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028002 56 ATCLQLLEE--NLKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 56 ~~~l~~l~~--~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
..+++.+.. .+.... +++|+|+|.|.-++.++-.. |+.+++.+|.....+...+......++ .|++++++
T Consensus 33 ~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~ 105 (184)
T PF02527_consen 33 RHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVING 105 (184)
T ss_dssp HHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES
T ss_pred HHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEe
Confidence 355555431 233333 89999999999999888774 778999999999999998888888776 68999999
Q ss_pred CCCCCCCCCCCccEEEEccCCC--CchHHHHHhcCCCcEEEEEeCC
Q 028002 133 DGRKGWPEFAPYDAIHVGAAAP--EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 133 d~~~~~~~~~~~D~V~~~~~~~--~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.+.+ ......||+|++-+..+ .+.+.+..++++||.+++.-+.
T Consensus 106 R~E~-~~~~~~fd~v~aRAv~~l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 106 RAEE-PEYRESFDVVTARAVAPLDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp -HHH-TTTTT-EEEEEEESSSSHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred eecc-cccCCCccEEEeehhcCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 9887 33337899999987653 5667788999999999987654
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-08 Score=74.87 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCccH----HHHHHHHHhC--C--CCeEEEEecChHHHHHHHHHHHhhcc--------------c--C-cc
Q 028002 68 PGMHALDIGSGTGY----LTACFALMVG--P--QGRAVGVEHIPELVVSSIQNIEKSAA--------------A--P-LL 122 (215)
Q Consensus 68 ~~~~vLdiG~G~G~----~~~~l~~~~~--~--~~~v~~~D~s~~~~~~a~~~~~~~~~--------------~--~-~~ 122 (215)
+..+|+..||+||. +++.+..... . .-+++|+|+|+.+++.|++-.-.... . . ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999999994 3333444221 1 25999999999999999863311100 0 0 00
Q ss_pred -----cCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEEeCC
Q 028002 123 -----KEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 123 -----~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
-...+.|...|..+..+..+.||+|+|..++-. +.+.+.+.|+|||+|++-...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 026789999998884444589999999998743 446788999999999995443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.8e-07 Score=73.85 Aligned_cols=126 Identities=16% Similarity=0.119 Sum_probs=94.5
Q ss_pred cCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCC------------------------------
Q 028002 44 GYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ------------------------------ 93 (215)
Q Consensus 44 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~------------------------------ 93 (215)
..+.....+.+.+.++.+-. ..++..++|--||+|.+.+..|-.. .+
T Consensus 169 ~~g~ApLketLAaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~-~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~ 245 (381)
T COG0116 169 YDGPAPLKETLAAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIA-ANIAPGLNRRFGFEFWDWFDKDLWDKLREEAE 245 (381)
T ss_pred cCCCCCchHHHHHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhc-cccCCccccccchhhhhhccHHHHHHHHHHHH
Confidence 33444555555566655543 6777899999999999999887653 21
Q ss_pred --C-------eEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC------C---
Q 028002 94 --G-------RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP------E--- 155 (215)
Q Consensus 94 --~-------~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~------~--- 155 (215)
. .++|+|+++.+++.|+.|....++. +.+.|.++|+.......+.+|+|+++++.- .
T Consensus 246 ~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~-----d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~ 320 (381)
T COG0116 246 ERARRGKELPIIYGSDIDPRHIEGAKANARAAGVG-----DLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVA 320 (381)
T ss_pred HHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCC-----ceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHH
Confidence 1 3789999999999999999998886 789999999987655447899999999862 1
Q ss_pred -----chHHHHHhcCCCcEEEEEeCCC
Q 028002 156 -----IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 156 -----~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+-+.+.+.++--+..++++...
T Consensus 321 ~LY~~fg~~lk~~~~~ws~~v~tt~e~ 347 (381)
T COG0116 321 KLYREFGRTLKRLLAGWSRYVFTTSED 347 (381)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEccHH
Confidence 1134557777778888876653
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=70.04 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=57.9
Q ss_pred EEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEE
Q 028002 97 VGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRM 170 (215)
Q Consensus 97 ~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~l 170 (215)
+|+|+|+.|++.|+++....... ...+++++++|+.+.....++||+|++...++++ ++++.++|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~---~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS---CYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc---CCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 48999999999998776432110 1147899999998766665789999998877654 46899999999999
Q ss_pred EEEe
Q 028002 171 VIPV 174 (215)
Q Consensus 171 v~~~ 174 (215)
++..
T Consensus 78 ~i~d 81 (160)
T PLN02232 78 SILD 81 (160)
T ss_pred EEEE
Confidence 8754
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.8e-07 Score=79.72 Aligned_cols=124 Identities=17% Similarity=0.095 Sum_probs=87.1
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhC------------------------------------
Q 028002 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG------------------------------------ 91 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~------------------------------------ 91 (215)
....+.+.+.++.... ...++..++|.+||+|.+.+..+....
T Consensus 171 Apl~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~ 249 (702)
T PRK11783 171 APLKENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERAR 249 (702)
T ss_pred CCCcHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 3445556666665432 225678999999999999988765310
Q ss_pred -----CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC--CCCccEEEEccCCCC---------
Q 028002 92 -----PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAPE--------- 155 (215)
Q Consensus 92 -----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~V~~~~~~~~--------- 155 (215)
...+++|+|+++.+++.|++|+...++. +.+++.++|+.+.... .+.||+|++++++-.
T Consensus 250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~-----~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~ 324 (702)
T PRK11783 250 AGLAELPSKFYGSDIDPRVIQAARKNARRAGVA-----ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALI 324 (702)
T ss_pred hcccccCceEEEEECCHHHHHHHHHHHHHcCCC-----cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHH
Confidence 0136999999999999999999988764 5689999998765432 246999999998722
Q ss_pred -chHHHH---HhcCCCcEEEEEeCCC
Q 028002 156 -IPQALI---DQLKPGGRMVIPVGNI 177 (215)
Q Consensus 156 -~~~~~~---~~Lk~gG~lv~~~~~~ 177 (215)
+...+. +...+|+.+++.+++.
T Consensus 325 ~lY~~lg~~lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 325 ALYSQLGRRLKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 112222 3334888888777653
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-07 Score=71.40 Aligned_cols=96 Identities=21% Similarity=0.191 Sum_probs=66.5
Q ss_pred CCEEEEEcCCccHHHHHHH-HHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 69 GMHALDIGSGTGYLTACFA-LMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~-~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
..+.||+|+|.|+.+..++ +.+ .+|..+|..+..++.|++.+..... ...++.+....+..|...+||+|
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f---~~VDlVEp~~~Fl~~a~~~l~~~~~------~v~~~~~~gLQ~f~P~~~~YDlI 126 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVF---DEVDLVEPVEKFLEQAKEYLGKDNP------RVGEFYCVGLQDFTPEEGKYDLI 126 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC----SEEEEEES-HHHHHHHHHHTCCGGC------CEEEEEES-GGG----TT-EEEE
T ss_pred cceEEecccccchhHHHHHHHhc---CEeEEeccCHHHHHHHHHHhcccCC------CcceEEecCHhhccCCCCcEeEE
Confidence 4689999999999998774 333 7999999999999999987654111 23466666666666665799999
Q ss_pred EEccCCCC--------chHHHHHhcCCCcEEEEE
Q 028002 148 HVGAAAPE--------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 148 ~~~~~~~~--------~~~~~~~~Lk~gG~lv~~ 173 (215)
++.-.+-+ +++.+...|+|+|++++=
T Consensus 127 W~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 127 WIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 88766544 446788999999999984
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.1e-07 Score=68.27 Aligned_cols=96 Identities=21% Similarity=0.257 Sum_probs=79.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC-ccEE
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP-YDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~D~V 147 (215)
+.+++|||+|.|.-++.++-. .|+.+++.+|.....+.+.++...+.++ +|+.++++.+++.... .. ||+|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L------~nv~i~~~RaE~~~~~-~~~~D~v 139 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGL------ENVEIVHGRAEEFGQE-KKQYDVV 139 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCC------CCeEEehhhHhhcccc-cccCcEE
Confidence 589999999999999998844 4667899999999999998888888765 6899999998876553 23 9999
Q ss_pred EEccCC--CCchHHHHHhcCCCcEEEE
Q 028002 148 HVGAAA--PEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 148 ~~~~~~--~~~~~~~~~~Lk~gG~lv~ 172 (215)
.+.+.. ..+.+-+..++++||.++.
T Consensus 140 tsRAva~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 140 TSRAVASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred EeehccchHHHHHHHHHhcccCCcchh
Confidence 987654 5667888999999998764
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-07 Score=70.38 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
+..+++.+. ...+...|.|+|||.+.++..+. ...+|..+|.-. .+-.++.+|+
T Consensus 60 vd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva---------------------~n~~Vtacdi 113 (219)
T PF05148_consen 60 VDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVA---------------------PNPRVTACDI 113 (219)
T ss_dssp HHHHHHHHC-TS-TTS-EEEES-TT-HHHHH------S---EEEEESS----------------------SSTTEEES-T
T ss_pred HHHHHHHHH-hcCCCEEEEECCCchHHHHHhcc----cCceEEEeeccC---------------------CCCCEEEecC
Confidence 467778876 23445799999999998885443 225799999744 2335778898
Q ss_pred CCCCCCCCCccEEEEccCC-----CCchHHHHHhcCCCcEEEEEe
Q 028002 135 RKGWPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~-----~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
...+.+.++.|++++..++ ..++.++.++||+||.|.+.-
T Consensus 114 a~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 114 ANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEE
Confidence 8777777899998777654 456789999999999999954
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.5e-06 Score=66.04 Aligned_cols=105 Identities=16% Similarity=0.078 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CC-CC
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PE-FA 142 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~ 142 (215)
...-+||||.||.|.....+....+. ..++...|.++..++..++.+.+.++. +.+.|.++|+.+.. .. .-
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~-----~i~~f~~~dAfd~~~l~~l~p 208 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE-----DIARFEQGDAFDRDSLAALDP 208 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc-----cceEEEecCCCCHhHhhccCC
Confidence 34579999999999998888777532 268999999999999999999998875 45599999987632 11 13
Q ss_pred CccEEEEccCCCCch---------HHHHHhcCCCcEEEEEeCC
Q 028002 143 PYDAIHVGAAAPEIP---------QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~---------~~~~~~Lk~gG~lv~~~~~ 176 (215)
..+++++++.++-+. ..+...+.|||+|+++.-.
T Consensus 209 ~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQP 251 (311)
T PF12147_consen 209 APTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQP 251 (311)
T ss_pred CCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 579998888765444 3467889999999997633
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-07 Score=68.66 Aligned_cols=92 Identities=20% Similarity=0.239 Sum_probs=74.2
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
.+.+.|+|+|+|.++...+... .+|+++|.++.....|++++...+. .+++++.+|+..... +..|+|+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~------~n~evv~gDA~~y~f--e~ADvvi 101 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGD------VNWEVVVGDARDYDF--ENADVVI 101 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCC------cceEEEecccccccc--cccceeH
Confidence 4789999999999999998874 7999999999999999999866554 699999999987654 5689997
Q ss_pred EccCCC--------CchHHHHHhcCCCcEEE
Q 028002 149 VGAAAP--------EIPQALIDQLKPGGRMV 171 (215)
Q Consensus 149 ~~~~~~--------~~~~~~~~~Lk~gG~lv 171 (215)
|-.--. .+++.+.+.||..+.++
T Consensus 102 cEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 102 CEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 754321 23356778888888876
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.7e-07 Score=66.24 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=96.0
Q ss_pred cCcCCCCCC--CCCCcCCCccccCCc-ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEe
Q 028002 24 DRACFVPDG--TPPYVDSPMAIGYNA-TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVE 100 (215)
Q Consensus 24 ~r~~~~~~~--~~~y~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D 100 (215)
|+.+++.+. ++...|..+.+.... .+-........... ..+.-.+.|||||-|.+...++..+ |+.-+.|.|
T Consensus 17 pqKr~YRQRAHsNP~sDh~l~yPvsP~~mDWS~~yp~f~~~----~~~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmE 91 (249)
T KOG3115|consen 17 PQKRYYRQRAHSNPLSDHTLEYPVSPQEMDWSKYYPDFRRA----LNKKVEFADIGCGYGGLLMKLAPKF-PDTLILGME 91 (249)
T ss_pred cHHHHHHHHhhcCCCccCcccCCCChHhCcHHHhhhhhhhh----ccccceEEeeccCccchhhhccccC-ccceeeeeh
Confidence 455555544 677778777665443 12222222222222 3344678999999999999999996 778999999
Q ss_pred cChHHHHHHHHHHHhhcccCc-ccCCCeEEEeCCCCCCCC---CCCCccEEEEccCCC--------------CchHHHHH
Q 028002 101 HIPELVVSSIQNIEKSAAAPL-LKEGSLSVHVGDGRKGWP---EFAPYDAIHVGAAAP--------------EIPQALID 162 (215)
Q Consensus 101 ~s~~~~~~a~~~~~~~~~~~~-~~~~~v~~~~~d~~~~~~---~~~~~D~V~~~~~~~--------------~~~~~~~~ 162 (215)
+.....++.++++...+..+. -.+.|+.+...+.....+ ..+...-.+...+-+ ++..+..-
T Consensus 92 IR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay 171 (249)
T KOG3115|consen 92 IRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAY 171 (249)
T ss_pred hhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHh
Confidence 999999999999987764322 224678888887766544 223344444333332 34456778
Q ss_pred hcCCCcEEEEEe
Q 028002 163 QLKPGGRMVIPV 174 (215)
Q Consensus 163 ~Lk~gG~lv~~~ 174 (215)
+|++||.++..+
T Consensus 172 ~l~~gg~~ytit 183 (249)
T KOG3115|consen 172 VLREGGILYTIT 183 (249)
T ss_pred hhhcCceEEEEe
Confidence 899999999865
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.3e-07 Score=70.66 Aligned_cols=95 Identities=21% Similarity=0.160 Sum_probs=75.5
Q ss_pred Cc-ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028002 46 NA-TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 46 ~~-~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
|+ ++..+.+...+++.+. +.++..|||+|+|+|.+|..+++.. .+++++|.++...+..++.+.. .
T Consensus 9 gQnFL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~--------~ 75 (262)
T PF00398_consen 9 GQNFLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS--------N 75 (262)
T ss_dssp TSSEEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT--------C
T ss_pred CcCeeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhh--------c
Confidence 44 4568888999999987 6688999999999999999999985 7999999999999988876642 2
Q ss_pred CCeEEEeCCCCCCCCCC---CCccEEEEccCC
Q 028002 125 GSLSVHVGDGRKGWPEF---APYDAIHVGAAA 153 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~~~---~~~D~V~~~~~~ 153 (215)
.+++++.+|+....... +....|+++.+.
T Consensus 76 ~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 76 PNVEVINGDFLKWDLYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp SSEEEEES-TTTSCGGGHCSSSEEEEEEEETG
T ss_pred ccceeeecchhccccHHhhcCCceEEEEEecc
Confidence 68999999998753321 245577777766
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.1e-07 Score=67.58 Aligned_cols=119 Identities=26% Similarity=0.351 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcc---cCcccCCCe
Q 028002 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA---APLLKEGSL 127 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~~v 127 (215)
.+.....+++.+. +.+++.++|+|||.|.....++-..+- .+.+|+|+.+...+.|+........ .......++
T Consensus 27 ~~~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~-~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v 103 (205)
T PF08123_consen 27 SPEFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGC-KKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV 103 (205)
T ss_dssp HHHHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE
T ss_pred CHHHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCC-cEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 4445777888776 888999999999999998888766543 5699999999988887664433211 011223578
Q ss_pred EEEeCCCCCCCCC---CCCccEEEEccCC-C-Cch---HHHHHhcCCCcEEEE
Q 028002 128 SVHVGDGRKGWPE---FAPYDAIHVGAAA-P-EIP---QALIDQLKPGGRMVI 172 (215)
Q Consensus 128 ~~~~~d~~~~~~~---~~~~D~V~~~~~~-~-~~~---~~~~~~Lk~gG~lv~ 172 (215)
++..+|+.+.... -...|+|+++..+ . .+. .+....||+|-++|.
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 8888887653110 1357999998754 2 222 344567888877765
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.2e-06 Score=69.73 Aligned_cols=115 Identities=9% Similarity=0.084 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCC---CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE-
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV- 129 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~- 129 (215)
++......+...+.++..++|+|||+|.-+..+++.+.. ...++++|+|...++.+.+++.... ++.+.+
T Consensus 62 iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~------~p~l~v~ 135 (319)
T TIGR03439 62 ILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN------FSHVRCA 135 (319)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc------CCCeEEE
Confidence 334444445545777889999999999988877776632 2579999999999999998887222 134544
Q ss_pred -EeCCCCCC---CCC---CCCccEEEEcc-CCC--------CchHHHHH-hcCCCcEEEEEe
Q 028002 130 -HVGDGRKG---WPE---FAPYDAIHVGA-AAP--------EIPQALID-QLKPGGRMVIPV 174 (215)
Q Consensus 130 -~~~d~~~~---~~~---~~~~D~V~~~~-~~~--------~~~~~~~~-~Lk~gG~lv~~~ 174 (215)
+.+|..+. .+. .....+++..+ ++- .++..+.+ .|+|||.|++-+
T Consensus 136 ~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 136 GLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred EEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 77877553 111 13456665554 332 24456778 899999999955
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.6e-06 Score=68.64 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe
Q 028002 52 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 131 (215)
Q Consensus 52 ~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~ 131 (215)
|=+..++++.+. +.++..++|..+|.|+.+..+++.+++ ++|+|+|.++.+++.+++++..+. .++.+++
T Consensus 6 pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-------~R~~~i~ 75 (305)
T TIGR00006 6 SVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-------GRVVLIH 75 (305)
T ss_pred chhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-------CcEEEEe
Confidence 335788888887 778889999999999999999998754 899999999999999999886532 5889999
Q ss_pred CCCCCCC---C--CCCCccEEEEccC
Q 028002 132 GDGRKGW---P--EFAPYDAIHVGAA 152 (215)
Q Consensus 132 ~d~~~~~---~--~~~~~D~V~~~~~ 152 (215)
++..+.. . ...++|.|+.+..
T Consensus 76 ~nF~~l~~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 76 DNFANFFEHLDELLVTKIDGILVDLG 101 (305)
T ss_pred CCHHHHHHHHHhcCCCcccEEEEecc
Confidence 9877521 1 2256999987753
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-06 Score=66.92 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=70.3
Q ss_pred HHHHHHHhcCCCCC--EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC---CCeEEEe
Q 028002 57 TCLQLLEENLKPGM--HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE---GSLSVHV 131 (215)
Q Consensus 57 ~~l~~l~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~---~~v~~~~ 131 (215)
.+++.+. ++++. +|||+.+|+|..+..++.+ | .+|+++|.++......++++........+.. .+++++.
T Consensus 77 ~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~-G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV-G--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 3344443 66776 9999999999999999988 4 6799999999999999988876422111211 4688899
Q ss_pred CCCCCCCCC-CCCccEEEEccCCCC
Q 028002 132 GDGRKGWPE-FAPYDAIHVGAAAPE 155 (215)
Q Consensus 132 ~d~~~~~~~-~~~~D~V~~~~~~~~ 155 (215)
+|....+.. .+.||+|+.++++++
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCCCC
Confidence 987665432 247999999998865
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.5e-06 Score=63.78 Aligned_cols=102 Identities=25% Similarity=0.305 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
.++.+.. ..+++++.|+|+|+..|+.+..+++.+++.+.|+++|+.+-. ...++.++++|+.
T Consensus 34 ~el~~k~-~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------------~~~~V~~iq~d~~ 95 (205)
T COG0293 34 LELNEKF-KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------------PIPGVIFLQGDIT 95 (205)
T ss_pred HHHHHhc-CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------------cCCCceEEeeecc
Confidence 3444444 246889999999999999999999998877789999997742 1156899999987
Q ss_pred CCC--------CCCCCccEEEEccCC--------CC---------chHHHHHhcCCCcEEEEEeC
Q 028002 136 KGW--------PEFAPYDAIHVGAAA--------PE---------IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 136 ~~~--------~~~~~~D~V~~~~~~--------~~---------~~~~~~~~Lk~gG~lv~~~~ 175 (215)
... ....++|+|+++... ++ .++-+..+|+|||.+++...
T Consensus 96 ~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 96 DEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred CccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 532 122457999988754 22 11345679999999998653
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.3e-06 Score=66.42 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
+..+++.+.. ......|.|+|||.+.++. . ...+|+.+|+.+ .+-+++.+|+
T Consensus 168 ld~ii~~ik~-r~~~~vIaD~GCGEakiA~---~---~~~kV~SfDL~a---------------------~~~~V~~cDm 219 (325)
T KOG3045|consen 168 LDVIIRKIKR-RPKNIVIADFGCGEAKIAS---S---ERHKVHSFDLVA---------------------VNERVIACDM 219 (325)
T ss_pred HHHHHHHHHh-CcCceEEEecccchhhhhh---c---cccceeeeeeec---------------------CCCceeeccc
Confidence 3466666662 2345688999999987664 2 226899999733 3567888899
Q ss_pred CCCCCCCCCccEEEEccCC-----CCchHHHHHhcCCCcEEEEEe
Q 028002 135 RKGWPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~-----~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
...+..+++.|+++++.++ ..++.++.++|++||.+++.-
T Consensus 220 ~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 220 RNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred cCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEe
Confidence 8877777899988766543 456789999999999999953
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.9e-06 Score=67.15 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh-hcccCcccCCCeEEEeCCCCCCCC-CCCCc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-SAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~ 144 (215)
+.-.+||-+|.|.|.-...+.+. ....+++.+|.+|.|++.++++..- .-..+.++.++++++..|+.+... ..+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 44578999999999999999886 3348999999999999999844321 112344667899999999876443 33689
Q ss_pred cEEEEccCCCCch-----------HHHHHhcCCCcEEEEEeCCCc
Q 028002 145 DAIHVGAAAPEIP-----------QALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 145 D~V~~~~~~~~~~-----------~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
|.|+.+.+-+..+ ..+.+.|+++|.+++..++..
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y 411 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY 411 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc
Confidence 9999887665433 357789999999999776654
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.9e-06 Score=64.38 Aligned_cols=103 Identities=21% Similarity=0.263 Sum_probs=64.8
Q ss_pred CEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH-hhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 70 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE-KSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 70 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~-~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
.+|+=||||. -..++.+++..++...++++|+++.+++.+++.+. ..++. .++.++.+|......+...||+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-----~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS-----KRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc-----CCeEEEecchhccccccccCCEE
Confidence 5999999998 55666667665666789999999999999998877 33443 68999999987654444689999
Q ss_pred EEccCCC-------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 148 HVGAAAP-------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 148 ~~~~~~~-------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+...-.. .+++.+.+.++||..+++=..++
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence 8776543 46678899999999999865554
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-05 Score=60.60 Aligned_cols=112 Identities=27% Similarity=0.329 Sum_probs=82.7
Q ss_pred HHHHHHHHHH-hcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028002 54 MHATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 54 ~~~~~l~~l~-~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
+.+.++.-+. ..++++.+||-+|+.+|....+++.-.+ ++.++++|.++......-....+ .+|+-.+.+
T Consensus 61 LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~--------R~Ni~PIL~ 131 (231)
T COG1889 61 LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK--------RPNIIPILE 131 (231)
T ss_pred HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh--------CCCceeeec
Confidence 3455555444 3478899999999999999999999876 68999999999875554433332 168889999
Q ss_pred CCCCCCC---CCCCccEEEEccCCCC----chHHHHHhcCCCcEEEEEe
Q 028002 133 DGRKGWP---EFAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 133 d~~~~~~---~~~~~D~V~~~~~~~~----~~~~~~~~Lk~gG~lv~~~ 174 (215)
|+..... --+..|+|+.+-.-+. +..++...||+||.+++++
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred ccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEE
Confidence 9875322 1257999998876554 3357788999999888754
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-05 Score=56.06 Aligned_cols=105 Identities=26% Similarity=0.378 Sum_probs=67.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHh---CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028002 67 KPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
.+..+|+|+|||.|+++..++..+ .+..+|+++|.++..++.+.++....... ...++.+..++....... ..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD---LEKRLSFIQGDIADESSS-DP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch---hhccchhhccchhhhccc-CC
Confidence 556899999999999999999843 24479999999999999998887765521 013555555555433222 55
Q ss_pred ccEEEEccCCCCchHHHH-HhcCCCcEEEEEeC
Q 028002 144 YDAIHVGAAAPEIPQALI-DQLKPGGRMVIPVG 175 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~-~~Lk~gG~lv~~~~ 175 (215)
.++++.-...-.+-..+. ..++++-..++.+|
T Consensus 100 ~~~~vgLHaCG~Ls~~~l~~~~~~~~~~l~~vp 132 (141)
T PF13679_consen 100 PDILVGLHACGDLSDRALRLFIRPNARFLVLVP 132 (141)
T ss_pred CeEEEEeecccchHHHHHHHHHHcCCCEEEEcC
Confidence 677765555444443332 23345555544433
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.17 E-value=1e-05 Score=61.91 Aligned_cols=75 Identities=25% Similarity=0.361 Sum_probs=58.0
Q ss_pred EEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEcc
Q 028002 72 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGA 151 (215)
Q Consensus 72 vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~ 151 (215)
|.||||-.|++...+++. +...+++++|+++.-++.|++++...+.. +++++..+|........+..|.|+..+
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-----~~i~~rlgdGL~~l~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLE-----DRIEVRLGDGLEVLKPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-T-----TTEEEEE-SGGGG--GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCc-----ccEEEEECCcccccCCCCCCCEEEEec
Confidence 689999999999999998 55578999999999999999999998765 789999999887666534478887666
Q ss_pred C
Q 028002 152 A 152 (215)
Q Consensus 152 ~ 152 (215)
.
T Consensus 75 M 75 (205)
T PF04816_consen 75 M 75 (205)
T ss_dssp E
T ss_pred C
Confidence 4
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.7e-06 Score=63.66 Aligned_cols=101 Identities=18% Similarity=0.070 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
+.-..++|||||-|.+...+... +- .+++.+|.|-.|++.++.. +..+ -......+|.......++++|+
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e-~v-ekli~~DtS~~M~~s~~~~-qdp~-------i~~~~~v~DEE~Ldf~ens~DL 140 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGE-GV-EKLIMMDTSYDMIKSCRDA-QDPS-------IETSYFVGDEEFLDFKENSVDL 140 (325)
T ss_pred hhCcceeecccchhhhhHHHHhc-ch-hheeeeecchHHHHHhhcc-CCCc-------eEEEEEecchhcccccccchhh
Confidence 34468999999999999998776 33 7999999999999988752 1111 1234455665554455589999
Q ss_pred EEEccCCCCc------hHHHHHhcCCCcEEEEEeCCC
Q 028002 147 IHVGAAAPEI------PQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 147 V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|++...+++. +..+...|||+|.++.+.-.+
T Consensus 141 iisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasmlgg 177 (325)
T KOG2940|consen 141 IISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGG 177 (325)
T ss_pred hhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhcc
Confidence 9988877653 357888999999999876443
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.7e-07 Score=64.11 Aligned_cols=94 Identities=24% Similarity=0.381 Sum_probs=38.3
Q ss_pred EEEcCCccHHHHHHHHHhCCCC--eEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC--CCCccEEE
Q 028002 73 LDIGSGTGYLTACFALMVGPQG--RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIH 148 (215)
Q Consensus 73 LdiG~G~G~~~~~l~~~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~V~ 148 (215)
||+|+..|..+..+++.+.+.. +++++|..+. .+...+.++..+.. .++.++.++..+..+. .+++|+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-----~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-----DRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC-----CeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 6899999999999988765543 7999999995 22333333333332 5799999998654321 26899999
Q ss_pred EccCCC-----CchHHHHHhcCCCcEEEE
Q 028002 149 VGAAAP-----EIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 149 ~~~~~~-----~~~~~~~~~Lk~gG~lv~ 172 (215)
.++.-. .-++.+.+.|+|||.+++
T Consensus 75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 75 IDGDHSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp EES---HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 998632 233567789999999886
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.7e-06 Score=62.55 Aligned_cols=99 Identities=24% Similarity=0.346 Sum_probs=76.4
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHH----HHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPEL----VVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP- 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~----~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~- 139 (215)
|++|+.+||-+|+++|.....++...||.+-|+++|.|... +..|+++ .|+..+..|+.....
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------------tNiiPIiEDArhP~KY 220 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------------TNIIPIIEDARHPAKY 220 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------------CCceeeeccCCCchhe
Confidence 58999999999999999999999999999999999998854 3333322 688888888765321
Q ss_pred --CCCCccEEEEccCCCCch----HHHHHhcCCCcEEEEEeC
Q 028002 140 --EFAPYDAIHVGAAAPEIP----QALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 140 --~~~~~D~V~~~~~~~~~~----~~~~~~Lk~gG~lv~~~~ 175 (215)
.-...|+||++-.-+... -++...||+||-+++++-
T Consensus 221 RmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 221 RMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred eeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 224689999887665433 356789999999999763
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.5e-06 Score=69.62 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=57.5
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEE-----ecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGV-----EHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~-----D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
..+||+|||+|+++..+..+ + |+.+ |..+..++.|-++ ++ +..--+.+. ...+...+.|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-~----V~t~s~a~~d~~~~qvqfaleR----Gv------pa~~~~~~s-~rLPfp~~~f 182 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-N----VTTMSFAPNDEHEAQVQFALER----GV------PAMIGVLGS-QRLPFPSNAF 182 (506)
T ss_pred EEEEeccceeehhHHHHhhC-C----ceEEEcccccCCchhhhhhhhc----Cc------chhhhhhcc-ccccCCccch
Confidence 46899999999999999876 2 3333 3333445554332 21 111111111 2233344899
Q ss_pred cEEEEccCCCC-------chHHHHHhcCCCcEEEEEeCCCc
Q 028002 145 DAIHVGAAAPE-------IPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 145 D~V~~~~~~~~-------~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
|+|+|...... ++-++-++|+|||+++.+.+...
T Consensus 183 DmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 183 DMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 99998875532 33468899999999999876543
|
; GO: 0008168 methyltransferase activity |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-05 Score=57.48 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=47.4
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 71 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 71 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
+++|+|||.|..+..+++. ++..+++++|.++.+.+.+++++..++. .++.+....+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~-~~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK-GAEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHh-CCCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeeee
Confidence 4899999999999999887 4656899999999999999999887654 35666665544
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.3e-05 Score=63.91 Aligned_cols=107 Identities=22% Similarity=0.261 Sum_probs=74.6
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCC---CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC----
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---- 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---- 137 (215)
.++|+.+|||.++..|+-+..+...+.. .+.+++-|.+...+......+.... ..++.+...++...
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~------~~~~~v~~~~~~~~p~~~ 225 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP------SPNLLVTNHDASLFPNIY 225 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC------Ccceeeecccceeccccc
Confidence 4899999999999999999888877632 2489999999999888877763321 13444443333221
Q ss_pred ---CC--CCCCccEEEEccCCCC-----------------------------chHHHHHhcCCCcEEEEEeCCC
Q 028002 138 ---WP--EFAPYDAIHVGAAAPE-----------------------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 138 ---~~--~~~~~D~V~~~~~~~~-----------------------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.. ....||.|+++.++.. ++.+..++||+||.+++++++.
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 11 2247999998876511 1134678999999999998764
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.1e-06 Score=62.88 Aligned_cols=92 Identities=29% Similarity=0.376 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---------CC
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---------GW 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---------~~ 138 (215)
++.+|||+||++|+.+..++++.++..+|+++|+.+.. . ..++..+++|... ..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~--------~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------P--------LQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S---------TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------c--------ccceeeeecccchhhHHHhhhhhc
Confidence 45899999999999999999886456899999998761 0 0233333444321 11
Q ss_pred C-CCCCccEEEEccCCC--------Cch---------HHHHHhcCCCcEEEEEeCC
Q 028002 139 P-EFAPYDAIHVGAAAP--------EIP---------QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 139 ~-~~~~~D~V~~~~~~~--------~~~---------~~~~~~Lk~gG~lv~~~~~ 176 (215)
. ....+|+|+++.... +.. ..+...|++||.+++-+-.
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 1 125899999998331 111 2345789999988885533
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.4e-05 Score=58.10 Aligned_cols=83 Identities=28% Similarity=0.381 Sum_probs=70.4
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.++.+.++.|+||-.+++..++.+. ++...+++.|+++.-++.|.+++...+.. +.+++..+|........+.+
T Consensus 13 ~V~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~-----~~i~vr~~dgl~~l~~~d~~ 86 (226)
T COG2384 13 LVKQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLS-----ERIDVRLGDGLAVLELEDEI 86 (226)
T ss_pred HHHcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCc-----ceEEEeccCCccccCccCCc
Confidence 3556677999999999999999998 56689999999999999999999988776 78999999987766665689
Q ss_pred cEEEEccCC
Q 028002 145 DAIHVGAAA 153 (215)
Q Consensus 145 D~V~~~~~~ 153 (215)
|+|+..+.-
T Consensus 87 d~ivIAGMG 95 (226)
T COG2384 87 DVIVIAGMG 95 (226)
T ss_pred CEEEEeCCc
Confidence 988777653
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.1e-05 Score=59.98 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=39.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 115 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 115 (215)
..+|||+|||+|..+..+...++...+++++|.|+.+++.++..+..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 46999999999987777777665447899999999999999887654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.6e-05 Score=63.83 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=75.2
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC--C---C--
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG--R---K-- 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~--~---~-- 136 (215)
.++++.+||-+|+|+ |.++...++.+|. .+|+.+|.++..++.|++ +.. ..+....... . +
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~Ga---------~~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-FGA---------TVTDPSSHKSSPQELAELV 234 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-hCC---------eEEeeccccccHHHHHHHH
Confidence 478899999999998 9999999999876 799999999999999987 432 1222221111 0 0
Q ss_pred -CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 137 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 137 -~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
.......+|+.+.....+-..+.....++.||.+++.-
T Consensus 235 ~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred HhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEec
Confidence 11122459999999999988899999999999977643
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00011 Score=59.12 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=48.6
Q ss_pred CCEEEEEcCCccHH-HHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh-cccCcccCCCeEEEeCCCCC----CC-CCC
Q 028002 69 GMHALDIGSGTGYL-TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHVGDGRK----GW-PEF 141 (215)
Q Consensus 69 ~~~vLdiG~G~G~~-~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~v~~~~~d~~~----~~-~~~ 141 (215)
.-++||||||.... .+..++..+ -+++|.|+++..++.|++++..+ .+. .+|+++...-.. .. ...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~--W~fvaTdID~~sl~~A~~nv~~N~~L~-----~~I~l~~~~~~~~i~~~i~~~~ 175 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYG--WSFVATDIDPKSLESARENVERNPNLE-----SRIELRKQKNPDNIFDGIIQPN 175 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-T-----TTEEEEE--ST-SSTTTSTT--
T ss_pred ceEeecCCccHHHHHHHHhhhhcC--CeEEEecCCHHHHHHHHHHHHhccccc-----cceEEEEcCCccccchhhhccc
Confidence 45899999998644 444455543 79999999999999999999988 655 678887653222 11 123
Q ss_pred CCccEEEEccCCCCchHHH
Q 028002 142 APYDAIHVGAAAPEIPQAL 160 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~ 160 (215)
+.||+.+|++++..-.+++
T Consensus 176 e~~dftmCNPPFy~s~~e~ 194 (299)
T PF05971_consen 176 ERFDFTMCNPPFYSSQEEA 194 (299)
T ss_dssp S-EEEEEE-----SS----
T ss_pred ceeeEEecCCccccChhhh
Confidence 6899999999997666544
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.3e-05 Score=59.59 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
++.++++.|. ..++...+|..-|.|+.+..+++.+++.++++++|.++.+++.|++.+..++ +++.+++++
T Consensus 11 Ll~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-------~r~~~v~~~ 81 (314)
T COG0275 11 LLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-------GRVTLVHGN 81 (314)
T ss_pred HHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-------CcEEEEeCc
Confidence 5788899987 8888999999999999999999998777889999999999999999987654 589999988
Q ss_pred CCCCC---C--CCCCccEEEEcc
Q 028002 134 GRKGW---P--EFAPYDAIHVGA 151 (215)
Q Consensus 134 ~~~~~---~--~~~~~D~V~~~~ 151 (215)
+.... . ..+.+|.|+.+.
T Consensus 82 F~~l~~~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 82 FANLAEALKELGIGKVDGILLDL 104 (314)
T ss_pred HHHHHHHHHhcCCCceeEEEEec
Confidence 76421 1 225788887664
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.8e-05 Score=58.98 Aligned_cols=102 Identities=22% Similarity=0.288 Sum_probs=63.1
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHH------HHHHHHhhcccCcccCCCeEEEeCCCCCCC
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS------SIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~------a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 138 (215)
.++++++|+|+-.|.|+++..++..+++.+.|+++-..+...-. .+....+... .|.+.+-.+.....
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~------aN~e~~~~~~~A~~ 118 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY------ANVEVIGKPLVALG 118 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh------hhhhhhCCcccccC
Confidence 38999999999999999999999999999999988655431100 0111111111 23443333332222
Q ss_pred CCCCCccEEEEccCCC-------------CchHHHHHhcCCCcEEEEE
Q 028002 139 PEFAPYDAIHVGAAAP-------------EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~-------------~~~~~~~~~Lk~gG~lv~~ 173 (215)
+ .+..|++......+ .+..++.+.|||||++++.
T Consensus 119 ~-pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 119 A-PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred C-CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 2 25566665433322 2335788999999999884
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.9e-05 Score=60.88 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=71.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFA 142 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~ 142 (215)
.++|+.+|+-.|+|. |.++..+++.++ .+|+++|.+++-.+.|++.-. -.++.....+... -.+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGA------------d~~i~~~~~~~~~~~~~ 228 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGA------------DHVINSSDSDALEAVKE 228 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCC------------cEEEEcCCchhhHHhHh
Confidence 488999999999994 788889999876 799999999999998876321 1233322111111 112
Q ss_pred CccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 143 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
.||+|+...+ ...++...+.|++||.+++.-
T Consensus 229 ~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 229 IADAIIDTVG-PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred hCcEEEECCC-hhhHHHHHHHHhcCCEEEEEC
Confidence 4999999999 888999999999999999853
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00015 Score=60.29 Aligned_cols=99 Identities=19% Similarity=0.315 Sum_probs=71.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC-CCC---CCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-GRK---GWPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d-~~~---~~~~ 140 (215)
..++.+|+-+|||+ |.++..+++..|. .+++++|.++..++.|++..... .+.....+ ... ....
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~g~~---------~~~~~~~~~~~~~~~~~t~ 235 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAGGAD---------VVVNPSEDDAGAEILELTG 235 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhCCCe---------EeecCccccHHHHHHHHhC
Confidence 34455999999998 9999999998766 78999999999999998754321 11111111 000 1112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
...+|+++-........+.+.+++++||.+++.-
T Consensus 236 g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 236 GRGADVVIEAVGSPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEe
Confidence 1369999988887777889999999999998853
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.9e-05 Score=56.49 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=72.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~ 143 (215)
..+|.+||++|-|-|.....+-.+ .| .+=+.+|..+..++..++. +. .+.+++.+..+-+++... .+..
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~----gw---~ek~nViil~g~WeDvl~~L~d~~ 169 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDW----GW---REKENVIILEGRWEDVLNTLPDKH 169 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhc----cc---ccccceEEEecchHhhhccccccC
Confidence 467899999999999988888766 56 4567789999998877653 32 233788888876665332 2367
Q ss_pred ccEEEEccCC------CCchHHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAAA------PEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~------~~~~~~~~~~Lk~gG~lv~~ 173 (215)
||.|+.+.-. .++.+.+.++|||+|++-+.
T Consensus 170 FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 170 FDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred cceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 9999877643 23446788999999988763
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.4e-05 Score=58.36 Aligned_cols=95 Identities=21% Similarity=0.237 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
-.+.+|||+|+|+|..++..++. |. ..++..|+++...+.++-|...+++ ++.+...|... ....||+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~a-GA-~~v~a~d~~P~~~~ai~lNa~angv-------~i~~~~~d~~g---~~~~~Dl 145 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARA-GA-AEVVAADIDPWLEQAIRLNAAANGV-------SILFTHADLIG---SPPAFDL 145 (218)
T ss_pred cccceeeecccccChHHHHHHHh-hh-HHHHhcCCChHHHHHhhcchhhccc-------eeEEeeccccC---CCcceeE
Confidence 34789999999999999988887 44 6899999999888888888777663 67888887665 2267999
Q ss_pred EEEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028002 147 IHVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 147 V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
|+....+-. +++ +...|+..|.-++..
T Consensus 146 ~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 146 LLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred EEeeceecCchHHHHHHH-HHHHHHhCCCEEEEe
Confidence 987765521 223 556666667666543
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.1e-05 Score=60.38 Aligned_cols=92 Identities=23% Similarity=0.306 Sum_probs=63.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+++++||+||++|+.+..++++ | .+|+++|..+ +. ..+. ..+++....++.....+..+.+|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r-G--~~V~AVD~g~-l~----~~L~--------~~~~V~h~~~d~fr~~p~~~~vD 272 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR-G--MFVTAVDNGP-MA----QSLM--------DTGQVEHLRADGFKFRPPRKNVD 272 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc-C--CEEEEEechh-cC----Hhhh--------CCCCEEEEeccCcccCCCCCCCC
Confidence 467899999999999999999988 3 6999999544 21 1121 12688888888776655457899
Q ss_pred EEEEccCCC--CchHHHHHhcCCC--cEEEEE
Q 028002 146 AIHVGAAAP--EIPQALIDQLKPG--GRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~--~~~~~~~~~Lk~g--G~lv~~ 173 (215)
.++|+.... .+.+.+.+.|..| ...|++
T Consensus 273 wvVcDmve~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 273 WLVCDMVEKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred EEEEecccCHHHHHHHHHHHHhcCcccEEEEE
Confidence 999997653 2334455555544 344443
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.1e-05 Score=62.83 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=81.2
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC
Q 028002 60 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 139 (215)
Q Consensus 60 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 139 (215)
..+.....++..++|+|||.|..+..++...+ .++++++.++..+..+........+. .+-.++.++.....+
T Consensus 102 ~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~-----~k~~~~~~~~~~~~f 174 (364)
T KOG1269|consen 102 VALRESCFPGSKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLD-----NKCNFVVADFGKMPF 174 (364)
T ss_pred HHHhhcCcccccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhh-----hhcceehhhhhcCCC
Confidence 33444577888999999999999999887632 68999999998877776655554443 344557778777777
Q ss_pred CCCCccEEEEccCCCC------chHHHHHhcCCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~ 173 (215)
++..||.+.+.....+ ..+++.++++|||+.++-
T Consensus 175 edn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 175 EDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred CccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 7789999977766654 346889999999999984
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00031 Score=50.28 Aligned_cols=98 Identities=32% Similarity=0.378 Sum_probs=64.5
Q ss_pred EEEEcCCccHHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC--CCCCC-CCccEE
Q 028002 72 ALDIGSGTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GWPEF-APYDAI 147 (215)
Q Consensus 72 vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~~D~V 147 (215)
++|+|||+|... .+... ... ..++++|.++.++..++..... ... ..+.+..++... ..... ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARL-GGRGAYVVGVDLSPEMLALARARAEG-AGL-----GLVDFVVADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHh-CCCCceEEEEeCCHHHHHHHHhhhhh-cCC-----CceEEEEeccccCCCCCCCCCceeEE
Confidence 999999999977 44444 222 3789999999998885443322 110 116777777665 22222 379999
Q ss_pred EEccCC-----CCchHHHHHhcCCCcEEEEEeCCC
Q 028002 148 HVGAAA-----PEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 148 ~~~~~~-----~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
...... ......+.+.++|+|.+++.....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 124 ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 333333 345577889999999999976653
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0013 Score=51.11 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028002 53 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 53 ~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
..+.+++-+....--.|.+||-+|=..- .|+.++-. +...+++.+|+++..++..++.....+. +++....
T Consensus 29 T~~~Ra~~~~~~gdL~gk~il~lGDDDL-tSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl-------~i~~~~~ 99 (243)
T PF01861_consen 29 TTLRRAALMAERGDLEGKRILFLGDDDL-TSLALALT-GLPKRITVVDIDERLLDFINRVAEEEGL-------PIEAVHY 99 (243)
T ss_dssp HHHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT---------EEEE--
T ss_pred HHHHHHHHHHhcCcccCCEEEEEcCCcH-HHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCC-------ceEEEEe
Confidence 3455554444423335789999995542 33333333 3348999999999999999998888764 5999999
Q ss_pred CCCCCCCCC--CCccEEEEccCCC-----CchHHHHHhcCCCc-EEEEEeCC
Q 028002 133 DGRKGWPEF--APYDAIHVGAAAP-----EIPQALIDQLKPGG-RMVIPVGN 176 (215)
Q Consensus 133 d~~~~~~~~--~~~D~V~~~~~~~-----~~~~~~~~~Lk~gG-~lv~~~~~ 176 (215)
|....++.. ++||+++.+++.. -+..+....||..| ..++.+..
T Consensus 100 DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 100 DLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp -TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred cccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 999887753 7999999998764 24456677787766 55555443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.2e-05 Score=61.04 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----CCCC
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EFAP 143 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~ 143 (215)
....|+|..||.|+.++..+..+ ..|+++|+|+..+..|+.+++..|.. ++++|+++|+.+... +...
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~-----~rItFI~GD~ld~~~~lq~~K~~ 165 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVP-----DRITFICGDFLDLASKLKADKIK 165 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCC-----ceeEEEechHHHHHHHHhhhhhe
Confidence 34689999999999999998885 58999999999999999999998876 699999999886433 2234
Q ss_pred ccEEEEccCC
Q 028002 144 YDAIHVGAAA 153 (215)
Q Consensus 144 ~D~V~~~~~~ 153 (215)
+|.|+..++.
T Consensus 166 ~~~vf~sppw 175 (263)
T KOG2730|consen 166 YDCVFLSPPW 175 (263)
T ss_pred eeeeecCCCC
Confidence 6677776654
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.8e-05 Score=57.52 Aligned_cols=92 Identities=17% Similarity=0.104 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
+..+.+.+...+.+..+|+|||||.--++...... .++..|+|+|++..+++.....+...+ .+.++...|.
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~-------~~~~~~v~Dl 163 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLG-------VPHDARVRDL 163 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT--------CEEEEEE-T
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhC-------CCcceeEeee
Confidence 34445555445666789999999999988877755 455799999999999999998887765 3677778888
Q ss_pred CCCCCCCCCccEEEEccCCCC
Q 028002 135 RKGWPEFAPYDAIHVGAAAPE 155 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~ 155 (215)
....+. ...|+.+.--.++.
T Consensus 164 ~~~~~~-~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 164 LSDPPK-EPADLALLLKTLPC 183 (251)
T ss_dssp TTSHTT-SEESEEEEET-HHH
T ss_pred eccCCC-CCcchhhHHHHHHH
Confidence 776554 77999987766543
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00033 Score=55.61 Aligned_cols=104 Identities=25% Similarity=0.271 Sum_probs=70.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc---------------------------C-
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA---------------------------P- 120 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---------------------------~- 120 (215)
+.+||.-|||.|+++-.++.+ | -.+.|.|.|--|+-...-.++..... +
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~-G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL-G--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc-c--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 578999999999999999998 4 68999999998865544333210000 0
Q ss_pred ------cccCCCeEEEeCCCCCCCCCC---CCccEEEEccCCC------CchHHHHHhcCCCcEEEEEeCC
Q 028002 121 ------LLKEGSLSVHVGDGRKGWPEF---APYDAIHVGAAAP------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 121 ------~~~~~~v~~~~~d~~~~~~~~---~~~D~V~~~~~~~------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.-...++....+|+.+..... +.||+|+...-++ ++++.+.++||||| +++.++.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GP 203 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG-YWINFGP 203 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC-EEEecCC
Confidence 011246677777777655443 6899997665433 24467889999999 4555544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.8e-05 Score=61.45 Aligned_cols=89 Identities=19% Similarity=0.218 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
+..++++.|. ..++..++|..-|.|+.+..+++.+++ ++++|+|.|+.+++.+++++.... +++.+++++
T Consensus 8 ll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~-------~r~~~~~~~ 77 (310)
T PF01795_consen 8 LLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFD-------DRFIFIHGN 77 (310)
T ss_dssp THHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCC-------TTEEEEES-
T ss_pred cHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhcc-------ceEEEEecc
Confidence 5788899987 788899999999999999999998755 999999999999999988776432 689999998
Q ss_pred CCCC------CCCCCCccEEEEccC
Q 028002 134 GRKG------WPEFAPYDAIHVGAA 152 (215)
Q Consensus 134 ~~~~------~~~~~~~D~V~~~~~ 152 (215)
+.+. ......+|.|+.+..
T Consensus 78 F~~l~~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 78 FSNLDEYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp GGGHHHHHHHTTTTS-EEEEEEE-S
T ss_pred HHHHHHHHHHccCCCccCEEEEccc
Confidence 7752 112257999987753
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.5e-05 Score=55.38 Aligned_cols=96 Identities=21% Similarity=0.231 Sum_probs=65.2
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-CCCCCC-----
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGW----- 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~----- 138 (215)
.++|+.+|||+||..|+.+..+.++.+|++.|.|+|+-.- .+.+.+.++.+ |+.+..
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------------~p~~Ga~~i~~~dvtdp~~~~ki 128 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------------EPPEGATIIQGNDVTDPETYRKI 128 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------------cCCCCcccccccccCCHHHHHHH
Confidence 3688999999999999999999999889999999997432 11134455554 444311
Q ss_pred ---CCCCCccEEEEccCCC--------C--chH-------HHHHhcCCCcEEEEEeCCC
Q 028002 139 ---PEFAPYDAIHVGAAAP--------E--IPQ-------ALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 139 ---~~~~~~D~V~~~~~~~--------~--~~~-------~~~~~Lk~gG~lv~~~~~~ 177 (215)
.+....|+|+++.... | .++ -....++|+|.+++-+-.+
T Consensus 129 ~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 129 FEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred HHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 1225788888775321 1 111 2346789999999966543
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.6e-05 Score=57.55 Aligned_cols=87 Identities=23% Similarity=0.350 Sum_probs=51.6
Q ss_pred CCCC--CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcc---cCCCeEEEeCCCCCCCC-
Q 028002 66 LKPG--MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL---KEGSLSVHVGDGRKGWP- 139 (215)
Q Consensus 66 ~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~---~~~~v~~~~~d~~~~~~- 139 (215)
++++ .+|||..+|-|..+..++.. | .+|+++|.|+-.....+.-+......... -..+++++.+|..+.+.
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~ 147 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ 147 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC
T ss_pred CCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh
Confidence 4555 48999999999999999876 5 68999999998777666555443222111 01488999999887654
Q ss_pred CCCCccEEEEccCCCC
Q 028002 140 EFAPYDAIHVGAAAPE 155 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~ 155 (215)
...+||+|++++.+++
T Consensus 148 ~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 148 PDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HSS--SEEEE--S---
T ss_pred cCCCCCEEEECCCCCC
Confidence 2378999999998854
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00048 Score=59.69 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=87.2
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCC---CCeEEEEecChHHHHHHHHHHHhhcccCcc
Q 028002 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLL 122 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 122 (215)
|.+.+...+...+.+.+. +.+..+|+|..||+|++.....+.++. +..++|.|+++.....|+.++--++..
T Consensus 166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~--- 240 (489)
T COG0286 166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE--- 240 (489)
T ss_pred CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC---
Confidence 556666666666666665 456779999999999988888777642 267999999999999999988776642
Q ss_pred cCCCeEEEeCCCCCCC-C----CCCCccEEEEccCCC-------------------------------CchHHHHHhcCC
Q 028002 123 KEGSLSVHVGDGRKGW-P----EFAPYDAIHVGAAAP-------------------------------EIPQALIDQLKP 166 (215)
Q Consensus 123 ~~~~v~~~~~d~~~~~-~----~~~~~D~V~~~~~~~-------------------------------~~~~~~~~~Lk~ 166 (215)
. ++....+|..... . ....||.|++++++. .+...+...|+|
T Consensus 241 -~-~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~ 318 (489)
T COG0286 241 -G-DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKP 318 (489)
T ss_pred -c-cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCC
Confidence 1 4555666544332 2 225699999888652 011246788999
Q ss_pred CcEEEEEeCCC
Q 028002 167 GGRMVIPVGNI 177 (215)
Q Consensus 167 gG~lv~~~~~~ 177 (215)
||+..+.++++
T Consensus 319 ~g~aaivl~~g 329 (489)
T COG0286 319 GGRAAIVLPDG 329 (489)
T ss_pred CceEEEEecCC
Confidence 88777666654
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.1e-05 Score=60.40 Aligned_cols=94 Identities=23% Similarity=0.294 Sum_probs=70.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
...+..++|+|||.|-.... .|..-++++|++...+..+++. ....+..+|+...+....+||
T Consensus 43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~------------~~~~~~~ad~l~~p~~~~s~d 105 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS------------GGDNVCRADALKLPFREESFD 105 (293)
T ss_pred cCCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC------------CCceeehhhhhcCCCCCCccc
Confidence 34488999999999954311 1335799999999888877641 122688889888777778999
Q ss_pred EEEEccCCCCch---------HHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAPEIP---------QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~~~---------~~~~~~Lk~gG~lv~~~~~ 176 (215)
.++.....+++. +++.+.|+|||..++.+..
T Consensus 106 ~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 106 AALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 999999988765 5678999999997776544
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00056 Score=52.00 Aligned_cols=114 Identities=16% Similarity=0.231 Sum_probs=59.2
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHH---HhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCC
Q 028002 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFAL---MVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 126 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~ 126 (215)
..|.-+..+.+.+- .++| ..|+|+|.-.|+.+...|+ .++..++|+++|++-..... +.++..... ++
T Consensus 16 q~P~Dm~~~qeli~-~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~-----~r 86 (206)
T PF04989_consen 16 QYPQDMVAYQELIW-ELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMS-----PR 86 (206)
T ss_dssp S-HHHHHHHHHHHH-HH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG---------TT
T ss_pred cCHHHHHHHHHHHH-HhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcccc-----Cc
Confidence 45555555555554 3554 7999999999988887765 33566899999996544322 122222222 69
Q ss_pred eEEEeCCCCCCC--------CCCCCccEEEEccCC--CCch---HHHHHhcCCCcEEEE
Q 028002 127 LSVHVGDGRKGW--------PEFAPYDAIHVGAAA--PEIP---QALIDQLKPGGRMVI 172 (215)
Q Consensus 127 v~~~~~d~~~~~--------~~~~~~D~V~~~~~~--~~~~---~~~~~~Lk~gG~lv~ 172 (215)
++++++|..+.. .......+|+.++.- .++. +....++++|+++++
T Consensus 87 I~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 87 ITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp EEEEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEE
T ss_pred eEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEE
Confidence 999999976521 111234456655542 3444 456789999999998
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00017 Score=60.23 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
..+.++||.=+|+|.-++..++.+....+|++-|+|+.+++.+++|+..+++. .+.+++...|+..... ....||
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~----~~~~~v~~~DAn~ll~~~~~~fD 123 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE----DERIEVSNMDANVLLYSRQERFD 123 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S----GCCEEEEES-HHHHHCHSTT-EE
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc----CceEEEehhhHHHHhhhccccCC
Confidence 34568999999999999999888544479999999999999999999887764 1268888888765442 337899
Q ss_pred EEEEccC-C-CCchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAA-A-PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~-~-~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|=.++- . ..+++.+.+.++.||.|.++.-+
T Consensus 124 ~IDlDPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 124 VIDLDPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp EEEE--SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred EEEeCCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 9966642 2 24678999999999999997643
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0014 Score=51.83 Aligned_cols=115 Identities=23% Similarity=0.235 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCCCC-CEEEEEcCCc--cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028002 54 MHATCLQLLEENLKPG-MHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~-~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
++.+....+. -..| ..+||||||- -...-.+++...|+.+|+-+|.++..+..++..+..... ....++
T Consensus 55 Fl~RaVr~la--~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~------g~t~~v 126 (267)
T PF04672_consen 55 FLRRAVRYLA--EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR------GRTAYV 126 (267)
T ss_dssp HHHHHHHHHH--CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT------SEEEEE
T ss_pred HHHHHHHHHH--HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC------ccEEEE
Confidence 4455555554 2213 5799999994 334445666667889999999999999999988765421 237899
Q ss_pred eCCCCCCC---C---CCCCcc-----EEEEccCCCCc---------hHHHHHhcCCCcEEEEEeCC
Q 028002 131 VGDGRKGW---P---EFAPYD-----AIHVGAAAPEI---------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 131 ~~d~~~~~---~---~~~~~D-----~V~~~~~~~~~---------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.+|+.+.. . ..+-+| .|+....++++ ...+...|.||.+|+++...
T Consensus 127 ~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 127 QADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp E--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred eCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 99988621 1 001222 34555555443 35688899999999998754
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00052 Score=52.98 Aligned_cols=107 Identities=26% Similarity=0.216 Sum_probs=73.0
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE-EeCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV-HVGDG 134 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~-~~~d~ 134 (215)
...++.+. ...++..+||+|+.||.++..+.+. |. .+|+++|..-..+.+--+ . . +++.. ...|+
T Consensus 68 ~~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~-gA-k~VyavDVG~~Ql~~kLR---~---d-----~rV~~~E~tN~ 133 (245)
T COG1189 68 EKALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQR-GA-KHVYAVDVGYGQLHWKLR---N---D-----PRVIVLERTNV 133 (245)
T ss_pred HHHHHhcC-cCCCCCEEEEecCCCccHHHHHHHc-CC-cEEEEEEccCCccCHhHh---c---C-----CcEEEEecCCh
Confidence 34455544 2355789999999999999999988 44 799999988766554321 1 1 34433 34455
Q ss_pred CCCCCC--CCCccEEEEccCCCC---chHHHHHhcCCCcEEEEEeCC
Q 028002 135 RKGWPE--FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 135 ~~~~~~--~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
....+. .+..|+++++-++-. ++..+..+++++|.++..+-.
T Consensus 134 r~l~~~~~~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKP 180 (245)
T COG1189 134 RYLTPEDFTEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKP 180 (245)
T ss_pred hhCCHHHcccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecc
Confidence 443321 136789999887754 557788999999998886644
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00034 Score=57.78 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=66.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
..++.+||-.|+|. |..+..+++..|. .+++++|.++..++.+++ .+... -+.....+..+.....+.+
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~----lGa~~-----vi~~~~~~~~~~~~~~g~~ 236 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLARE----MGADK-----LVNPQNDDLDHYKAEKGYF 236 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH----cCCcE-----EecCCcccHHHHhccCCCC
Confidence 45688999999986 8888888888753 479999999998888765 22210 0111111111111112459
Q ss_pred cEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 145 DAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
|+|+.........+.+.+.|++||.+++.
T Consensus 237 D~vid~~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 237 DVSFEVSGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred CEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 99998877666678889999999999875
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=1e-05 Score=60.85 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=63.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
+.++||+|+|.|..+..++..+ .+|++.|.|..|....++. +..+.... +....+-+||+|.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk-------------~ynVl~~~--ew~~t~~k~dli~ 174 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK-------------NYNVLTEI--EWLQTDVKLDLIL 174 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc-------------CCceeeeh--hhhhcCceeehHH
Confidence 4789999999999999999887 7899999999998776542 22222211 1111224689997
Q ss_pred EccCCC------CchHHHHHhcCC-CcEEEEEe
Q 028002 149 VGAAAP------EIPQALIDQLKP-GGRMVIPV 174 (215)
Q Consensus 149 ~~~~~~------~~~~~~~~~Lk~-gG~lv~~~ 174 (215)
|-..++ .+++.++.+|+| +|..+++.
T Consensus 175 clNlLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 175 CLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 765543 356789999999 89888754
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00013 Score=57.52 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=66.8
Q ss_pred HHHHHHhcCCCCCEEEEEcCCccHHHH-HHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCc---------cc----
Q 028002 58 CLQLLEENLKPGMHALDIGSGTGYLTA-CFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL---------LK---- 123 (215)
Q Consensus 58 ~l~~l~~~~~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~---------~~---- 123 (215)
+.+.+.....++.++||+|||+-.... .+++.+ ..+++.|..+...+..++.++..+.... +.
T Consensus 46 l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~ 122 (256)
T PF01234_consen 46 LHETFSSGGVKGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKRE 122 (256)
T ss_dssp HHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSS
T ss_pred HHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcc
Confidence 333344333457799999999854322 223333 6899999999988877777654311000 00
Q ss_pred ---------CCCe-EEEeCCCCCCCCCC------CCccEEEEccCCC----------CchHHHHHhcCCCcEEEEEe
Q 028002 124 ---------EGSL-SVHVGDGRKGWPEF------APYDAIHVGAAAP----------EIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 124 ---------~~~v-~~~~~d~~~~~~~~------~~~D~V~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~ 174 (215)
...+ .++..|+.+..+-. .+||+|++...++ ...+++.++|||||.|++..
T Consensus 123 ~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 123 KWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp GHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 1223 46678887644321 2499998877553 23357889999999999853
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00069 Score=55.17 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=70.1
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEE
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 149 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~ 149 (215)
...+|+|.|.|..+..+...+ ..+-+++.+...+..++..+. +.++.+.+|..+..|. -|+|+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f---p~ik~infdlp~v~~~a~~~~----------~gV~~v~gdmfq~~P~---~daI~m 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY---PHIKGINFDLPFVLAAAPYLA----------PGVEHVAGDMFQDTPK---GDAIWM 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC---CCCceeecCHHHHHhhhhhhc----------CCcceecccccccCCC---cCeEEE
Confidence 689999999999999998875 468899998888777766543 2477788888776554 468877
Q ss_pred ccCCCC--------chHHHHHhcCCCcEEEEEeC
Q 028002 150 GAAAPE--------IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 150 ~~~~~~--------~~~~~~~~Lk~gG~lv~~~~ 175 (215)
--.+++ +++++.+.|+|||.+++.-+
T Consensus 243 kWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 243 KWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred EeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 766655 45688999999999998543
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0024 Score=54.26 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=76.3
Q ss_pred cCCCCC-EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028002 65 NLKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 65 ~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
++.+.. ++|.+|||.-.++..+-+- |. ..++.+|.|+..++........ ...-..+...|......++++
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~-G~-~dI~~iD~S~V~V~~m~~~~~~-------~~~~~~~~~~d~~~l~fedES 114 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKN-GF-EDITNIDSSSVVVAAMQVRNAK-------ERPEMQMVEMDMDQLVFEDES 114 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhc-CC-CCceeccccHHHHHHHHhcccc-------CCcceEEEEecchhccCCCcc
Confidence 355555 9999999999999888876 33 7899999999998877654321 225678888888877777789
Q ss_pred ccEEEEccCCCCch----------------HHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAAAPEIP----------------QALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~----------------~~~~~~Lk~gG~lv~~ 173 (215)
||+|+.-+.++++. .+++++|++||+.+..
T Consensus 115 FdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 115 FDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred eeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 99998777664433 4678999999986653
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00046 Score=55.95 Aligned_cols=81 Identities=25% Similarity=0.207 Sum_probs=62.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHH-------HHHHHHHhhcccCcccCCCeEEEeCCCCCC-
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVV-------SSIQNIEKSAAAPLLKEGSLSVHVGDGRKG- 137 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~-------~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~- 137 (215)
+++|+.|.|-..|||++....+.. | +-|+|.|++-.++. ..+.|+++.+.. ..-+++..+|....
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~F-G--a~viGtDIDyr~vragrg~~~si~aNFkQYg~~----~~fldvl~~D~sn~~ 278 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHF-G--AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS----SQFLDVLTADFSNPP 278 (421)
T ss_pred cCCCCEEecCccccCceeeehhhh-c--ceeeccccchheeecccCCCcchhHhHHHhCCc----chhhheeeecccCcc
Confidence 788999999999999999888876 4 78999999988766 345677776633 24567888888764
Q ss_pred CCCCCCccEEEEccCC
Q 028002 138 WPEFAPYDAIHVGAAA 153 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~ 153 (215)
+-....||.|+|+++.
T Consensus 279 ~rsn~~fDaIvcDPPY 294 (421)
T KOG2671|consen 279 LRSNLKFDAIVCDPPY 294 (421)
T ss_pred hhhcceeeEEEeCCCc
Confidence 3334689999999864
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0028 Score=55.03 Aligned_cols=96 Identities=23% Similarity=0.332 Sum_probs=66.0
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC--C---------
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD--G--------- 134 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d--~--------- 134 (215)
.++.+|+-+|+|. |..++..++.+|. +|+++|.++..++.+++ + +. ..+.+...+ .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aes-l---GA------~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVES-M---GA------EFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH-c---CC------eEEEeccccccccccchhhhc
Confidence 4689999999998 8899999998874 79999999999888875 2 21 111110000 0
Q ss_pred CCC--------CCC-CCCccEEEEccCCC-----Cc-hHHHHHhcCCCcEEEEEe
Q 028002 135 RKG--------WPE-FAPYDAIHVGAAAP-----EI-PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 135 ~~~--------~~~-~~~~D~V~~~~~~~-----~~-~~~~~~~Lk~gG~lv~~~ 174 (215)
... +.. ...+|+|+.....+ .+ .++..+.+||||+++...
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 000 000 13599999887653 35 488999999999988754
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0004 Score=49.56 Aligned_cols=74 Identities=20% Similarity=0.317 Sum_probs=52.6
Q ss_pred eEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCCCCccEEEEccCC-----CC----------c
Q 028002 95 RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEFAPYDAIHVGAAA-----PE----------I 156 (215)
Q Consensus 95 ~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~~D~V~~~~~~-----~~----------~ 156 (215)
+|+++|+.+.+++.+++++.+.+.. .+++++...-.. ..+. +++|+++.+... +. .
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-----~~v~li~~sHe~l~~~i~~-~~v~~~iFNLGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-----DRVTLILDSHENLDEYIPE-GPVDAAIFNLGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-----SGEEEEES-GGGGGGT--S---EEEEEEEESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-----CcEEEEECCHHHHHhhCcc-CCcCEEEEECCcCCCCCCCCCcCcHHHHHH
Confidence 5899999999999999999987765 578888876443 2333 589999887643 11 2
Q ss_pred hHHHHHhcCCCcEEEEEe
Q 028002 157 PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 157 ~~~~~~~Lk~gG~lv~~~ 174 (215)
++.+.++|+|||.+.+.+
T Consensus 75 l~~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHhhccCCEEEEEE
Confidence 257889999999999865
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00075 Score=53.67 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=81.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCCCccE
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPYDA 146 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~D~ 146 (215)
.++||.+|-|.|......+++ ..-..+..+|++...++..++.+...... +..+++.+..+|...... ..++||+
T Consensus 122 pkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~g--y~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACG--YEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcc--cCCCceEEEeccHHHHHHHhccCCceE
Confidence 478999999999988888776 34478999999999999999998776543 556789999998765432 2479999
Q ss_pred EEEccCCCC----------chHHHHHhcCCCcEEEEEeCC
Q 028002 147 IHVGAAAPE----------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 147 V~~~~~~~~----------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+.+.+-+- +...+.+.||++|++++...+
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 988765433 234678999999999986544
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=8.7e-05 Score=53.76 Aligned_cols=106 Identities=18% Similarity=0.119 Sum_probs=70.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC--CCCCCCcc
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEFAPYD 145 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~D 145 (215)
+.+|||+|.|. |..++.+|... +...|...|.++..++-.++....+... ...+..+..-+.... .....+||
T Consensus 30 g~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~s---~~tsc~vlrw~~~~aqsq~eq~tFD 105 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMAS---SLTSCCVLRWLIWGAQSQQEQHTFD 105 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhccccc---ccceehhhHHHHhhhHHHHhhCccc
Confidence 67899999996 66666677664 5589999999999998887766554221 112222222121111 11225899
Q ss_pred EEEEccCC------CCchHHHHHhcCCCcEEEEEeCCCc
Q 028002 146 AIHVGAAA------PEIPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 146 ~V~~~~~~------~~~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
.|++..-. ..+.+.+..+|+|.|.-++..|..-
T Consensus 106 iIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 106 IILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred EEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 99887643 2355678899999999888777643
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0011 Score=53.47 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 115 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 115 (215)
+..+++... ..+|+.|||..+|+|..+.+..+. + .+++|+|++++.++.|++++..
T Consensus 197 L~erlI~~~---S~~GD~VLDPF~GSGTT~~AA~~l-g--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 197 LLKRIILAS---SNPGDIVLDPFAGSFTTGAVAKAS-G--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHh---CCCCCEEEECCCCCcHHHHHHHHc-C--CCEEEEeCCHHHHHHHHHHHHh
Confidence 344444443 678999999999999988877766 3 8999999999999999999864
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0011 Score=55.58 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=49.2
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
..|||||+|||.++..+++.+ . ..++++|.-..|.+.|++....++.. ++++++..-.
T Consensus 68 v~vLdigtGTGLLSmMAvrag-a-D~vtA~EvfkPM~d~arkI~~kng~S-----dkI~vInkrS 125 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG-A-DSVTACEVFKPMVDLARKIMHKNGMS-----DKINVINKRS 125 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc-C-CeEEeehhhchHHHHHHHHHhcCCCc-----cceeeecccc
Confidence 468999999999999999884 4 46999999999999999999888876 6777776443
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0019 Score=53.60 Aligned_cols=95 Identities=16% Similarity=0.134 Sum_probs=63.4
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEec---ChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEH---IPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~---s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (215)
..++.+||-+|+|. |.++..+++..| .++++++. ++...+.+++ .+. ..+.....+..+ ....
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~----~Ga------~~v~~~~~~~~~-~~~~ 236 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE----LGA------TYVNSSKTPVAE-VKLV 236 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH----cCC------EEecCCccchhh-hhhc
Confidence 35788999999987 888888998875 47999987 5666666543 221 111111111111 1112
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+.+|+|+.............+.|+++|.+++.
T Consensus 237 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 237 GEFDLIIEATGVPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred CCCCEEEECcCCHHHHHHHHHHccCCcEEEEE
Confidence 46999998887666778889999999998764
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0015 Score=50.37 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 111 (215)
++.+++... ..++..|||..||+|..+.++.+. + .+.+|+|+++..++.|++
T Consensus 180 l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l-~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEEL-G--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHT-T---EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhh---hccceeeehhhhccChHHHHHHHc-C--CeEEEEeCCHHHHHHhcC
Confidence 455555554 678999999999999988887766 3 789999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0038 Score=51.59 Aligned_cols=90 Identities=19% Similarity=0.138 Sum_probs=61.4
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHH-hCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALM-VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
.+++.+||-+|||. |.++..++++ .+. .+++++|.++..++.+++ + + .. ....+ ......
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~-~~vi~~~~~~~k~~~a~~-~---~--------~~-~~~~~----~~~~~g 222 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPE-SKLVVFGKHQEKLDLFSF-A---D--------ET-YLIDD----IPEDLA 222 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCC-CcEEEEeCcHhHHHHHhh-c---C--------ce-eehhh----hhhccC
Confidence 46789999999987 7777777775 333 579999999988887754 1 1 11 10011 111125
Q ss_pred ccEEEEccC---CCCchHHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAA---APEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~---~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+|+.... ....++...++|+++|++++.
T Consensus 223 ~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 223 VDHAFECVGGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CcEEEECCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence 899987665 344667889999999999864
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00093 Score=50.78 Aligned_cols=105 Identities=12% Similarity=0.067 Sum_probs=60.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHhh-------------------cc---------
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKS-------------------AA--------- 118 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~-------------------~~--------- 118 (215)
..-++.|-+||+|++...+.-..+.. ..|++.|+++.+++.|++|+.-. +.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 34689999999999888775443322 68999999999999999988421 00
Q ss_pred --------cCcccCCCeEEEeCCCCCCC-----CCCCCccEEEEccCC---------------CCchHHHHHhcCCCcEE
Q 028002 119 --------APLLKEGSLSVHVGDGRKGW-----PEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRM 170 (215)
Q Consensus 119 --------~~~~~~~~v~~~~~d~~~~~-----~~~~~~D~V~~~~~~---------------~~~~~~~~~~Lk~gG~l 170 (215)
...-......+.++|+.+.. ......|+|+.+-+. ..+++.+...|-.++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 00012345677888887621 122346999988765 23456788899555666
Q ss_pred EE
Q 028002 171 VI 172 (215)
Q Consensus 171 v~ 172 (215)
++
T Consensus 211 ~v 212 (246)
T PF11599_consen 211 AV 212 (246)
T ss_dssp EE
T ss_pred EE
Confidence 66
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0007 Score=57.35 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~ 141 (215)
..++.+|||.-|++|.-++..++.++.-.++++.|.++..++..+++.+-++.+ +.++....|+.... ...
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-----~ive~~~~DA~~lM~~~~~~~ 181 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-----DIVEPHHSDANVLMYEHPMVA 181 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-----hhcccccchHHHHHHhccccc
Confidence 456789999999999999999998865589999999999999999998877654 55666667765321 122
Q ss_pred CCccEEEEcc--CCCCchHHHHHhcCCCcEEEEEeCC
Q 028002 142 APYDAIHVGA--AAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 142 ~~~D~V~~~~--~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
..||+|-.++ ....+++.+.+.++.||.|++++-+
T Consensus 182 ~~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 182 KFFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred cccceEecCCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 6799997775 3456789999999999999997644
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0038 Score=51.30 Aligned_cols=102 Identities=19% Similarity=0.224 Sum_probs=78.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCccEE
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~V 147 (215)
..+|+|.-||||.-++.++...+. .+++.-|+++.+++.+++|+.-+.. .+..++..|+...... ...||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~------~~~~v~n~DAN~lm~~~~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSG------EDAEVINKDANALLHELHRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCc------ccceeecchHHHHHHhcCCCccEE
Confidence 579999999999999999888654 4899999999999999999987622 3556666666543332 3689999
Q ss_pred EEcc--CCCCchHHHHHhcCCCcEEEEEeCCC
Q 028002 148 HVGA--AAPEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 148 ~~~~--~~~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
=.++ +..-+++.+.+.++.||.|.++.-+.
T Consensus 126 DiDPFGSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 126 DIDPFGSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred ecCCCCCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 6554 22346788899999999999976443
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.004 Score=50.66 Aligned_cols=87 Identities=25% Similarity=0.308 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
.++.+||-+|||. |.++..+++..|. ..++++|.++..++.+... . .+ +..+. ....+|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~~~----~--------~i-----~~~~~--~~~g~D 202 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGG-SPPAVWETNPRRRDGATGY----E--------VL-----DPEKD--PRRDYR 202 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhhhc----c--------cc-----Chhhc--cCCCCC
Confidence 3567899999987 8888889988764 4577888888776655421 0 01 00000 124699
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 146 AIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+.........+.+.+.|+++|++++.
T Consensus 203 vvid~~G~~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 203 AIYDASGDPSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred EEEECCCCHHHHHHHHHhhhcCcEEEEE
Confidence 9998887777778889999999999864
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0082 Score=41.92 Aligned_cols=47 Identities=17% Similarity=0.026 Sum_probs=40.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 116 (215)
.+.+|+|+|++.|..++.++-. |. ..|+++|.++...+..+++++.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GA-K~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GA-SFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-Cc-cEEEEeccCHHHHHHHHHHhhhh
Confidence 3689999999999999999876 44 79999999999999998877653
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0031 Score=48.17 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=55.4
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-C--CCCCccE
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-P--EFAPYDA 146 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~--~~~~~D~ 146 (215)
.++||+||=+......-... -.|+.||+++. ...+.+.|+.+.+ + +.+.||+
T Consensus 53 lrlLEVGals~~N~~s~~~~----fdvt~IDLns~---------------------~~~I~qqDFm~rplp~~~~e~Fdv 107 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW----FDVTRIDLNSQ---------------------HPGILQQDFMERPLPKNESEKFDV 107 (219)
T ss_pred ceEEeecccCCCCcccccCc----eeeEEeecCCC---------------------CCCceeeccccCCCCCCcccceeE
Confidence 68999999755433322222 46999998762 2345556665532 2 3478999
Q ss_pred EEEccCCCCch---------HHHHHhcCCCcE-----EEEEeCC
Q 028002 147 IHVGAAAPEIP---------QALIDQLKPGGR-----MVIPVGN 176 (215)
Q Consensus 147 V~~~~~~~~~~---------~~~~~~Lk~gG~-----lv~~~~~ 176 (215)
|.++..+..++ ..+.+.|+|+|. |++.+|.
T Consensus 108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 98888775444 578899999999 7776654
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0069 Score=43.44 Aligned_cols=109 Identities=28% Similarity=0.221 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
++.+++.+. ..+..+.+|+|+|.|......++. |. ...+|+|.++-.+.+++-..-..+.. ....|..-|.
T Consensus 61 v~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~-g~-~~a~GvELNpwLVaysrl~a~R~g~~-----k~trf~Rkdl 131 (199)
T KOG4058|consen 61 VENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARC-GL-RPAVGVELNPWLVAYSRLHAWRAGCA-----KSTRFRRKDL 131 (199)
T ss_pred HHHHHHHcc--CCCCCcEEeccCCCceeehhhhhh-CC-CcCCceeccHHHHHHHHHHHHHHhcc-----cchhhhhhhh
Confidence 455566665 456678999999999999888876 43 57899999999888876554444433 4555666565
Q ss_pred CCCCCCCCCccEEEEcc-CCCCchHHHHHhcCCCcEEEE
Q 028002 135 RKGWPEFAPYDAIHVGA-AAPEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~-~~~~~~~~~~~~Lk~gG~lv~ 172 (215)
......+-.+-+|+... .++.+.+.+...+..+..++.
T Consensus 132 wK~dl~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 132 WKVDLRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred hhccccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 44322212223333332 345566777778888887774
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0061 Score=47.51 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=42.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 116 (215)
..+++.|||..||+|....+..+. + .+++|+|+++...+.+.+++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~-~--r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS-G--RRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc-C--CCEEEEecCHHHHHHHHHHHHHH
Confidence 678899999999999988877766 3 78999999999999999988663
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0063 Score=48.76 Aligned_cols=99 Identities=21% Similarity=0.236 Sum_probs=64.8
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CCCCCCCCCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~ 143 (215)
..++.+||-+|+|. |..+..+++..|. .+++++|.++...+.+++ .+... -+.... .+..........
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~----~Ga~~-----~i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALS----FGATA-----LAEPEVLAERQGGLQNGRG 187 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCCcE-----ecCchhhHHHHHHHhCCCC
Confidence 45788999999986 8888888888753 358899999888777754 22210 000000 000000112246
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+|+.........+.+.+.|+++|.+++.-
T Consensus 188 ~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 188 VDVALEFSGATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCEEEECCCChHHHHHHHHHhcCCCEEEEec
Confidence 9999987766667788899999999998743
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.014 Score=48.50 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=65.4
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
.++++.+||-.|+|. |..+..+++..|. .+++++|.++...+.+++ .+.. .-+.....+... ....
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~~----~Ga~-----~~i~~~~~~~~~~i~~~~~ 242 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWARE----FGAT-----HTVNSSGTDPVEAIRALTG 242 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCCc-----eEEcCCCcCHHHHHHHHhC
Confidence 367889999999876 7888888888753 359999999988888754 2211 001111111111 0112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+|+|+.............+.+++||.+++.
T Consensus 243 ~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 243 GFGADVVIDAVGRPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 236899997766556677788999999999874
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.018 Score=47.34 Aligned_cols=91 Identities=24% Similarity=0.186 Sum_probs=62.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
..+++.+||-.|+|. |..+..+++..| .++++++.++...+.+++ .+.. .+ +.. .+. ..+.
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~----~Ga~------~v--i~~--~~~--~~~~ 223 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALA----LGAA------SA--GGA--YDT--PPEP 223 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH----hCCc------ee--ccc--ccc--Cccc
Confidence 367889999999875 777778888765 469999999888777754 2321 11 110 011 1145
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+++.............+.|++||++++.
T Consensus 224 ~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 224 LDAAILFAPAGGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred ceEEEECCCcHHHHHHHHHhhCCCcEEEEE
Confidence 887765554455677888999999999774
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.026 Score=47.42 Aligned_cols=100 Identities=19% Similarity=0.280 Sum_probs=65.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC-CCC---CCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-GRK---GWP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d-~~~---~~~ 139 (215)
.+.++.+||..|||. |..+..+++..|. .++++++.++...+.+++.... ..+.....+ ... ...
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~~~~---------~vi~~~~~~~~~~~l~~~~ 250 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSHLGA---------ETINFEEVDDVVEALRELT 250 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCCc---------EEEcCCcchHHHHHHHHHc
Confidence 367788999999998 8899999998753 4699999999988887764211 111111111 110 111
Q ss_pred CCCCccEEEEccCC---------------------CCchHHHHHhcCCCcEEEEEe
Q 028002 140 EFAPYDAIHVGAAA---------------------PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 140 ~~~~~D~V~~~~~~---------------------~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
....+|+|+..... ....+.+.+.++++|.++...
T Consensus 251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 22369999875432 224577889999999998853
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0095 Score=50.43 Aligned_cols=88 Identities=18% Similarity=0.116 Sum_probs=62.7
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.-++.+|+-+|+|. |......++.+| .+|+.+|.++...+.|++ .+ +.... ..+.. ..+
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~----~G---------~~~~~--~~e~v---~~a 258 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAM----EG---------YEVMT--MEEAV---KEG 258 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHh----cC---------CEEcc--HHHHH---cCC
Confidence 35689999999998 888888888766 479999999988777754 12 11111 11111 357
Q ss_pred cEEEEccCCCCchHH-HHHhcCCCcEEEEE
Q 028002 145 DAIHVGAAAPEIPQA-LIDQLKPGGRMVIP 173 (215)
Q Consensus 145 D~V~~~~~~~~~~~~-~~~~Lk~gG~lv~~ 173 (215)
|+|+........+.. ....+|+||+++..
T Consensus 259 DVVI~atG~~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 259 DIFVTTTGNKDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred CEEEECCCCHHHHHHHHHhcCCCCcEEEEe
Confidence 999988777666654 58999999998764
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.015 Score=48.61 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=65.1
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 141 (215)
++++.+||-.|+|. |..+..+++..|. .+|+++|.++...+.+++ .+.. .-+.....+..+ ....
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~-~~Vi~~~~~~~r~~~a~~----~Ga~-----~~i~~~~~~~~~~i~~~~~- 257 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGA-SQVVAVDLNEDKLALARE----LGAT-----ATVNAGDPNAVEQVRELTG- 257 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHH----cCCc-----eEeCCCchhHHHHHHHHhC-
Confidence 67788999999886 7888888888653 369999999998887754 2211 001111111111 0112
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+.+|+|+.........+...+.|+++|.+++.
T Consensus 258 ~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 258 GGVDYAFEMAGSVPALETAYEITRRGGTTVTA 289 (371)
T ss_pred CCCCEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence 36899998766666777889999999998864
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.018 Score=44.51 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhc----CCCCCEEEEEcCCccHHHHHHH-HHhCCCCeEEEEecChHHHHHHHHHHHhh-cccCcccCCCe
Q 028002 54 MHATCLQLLEEN----LKPGMHALDIGSGTGYLTACFA-LMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSL 127 (215)
Q Consensus 54 ~~~~~l~~l~~~----~~~~~~vLdiG~G~G~~~~~l~-~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~v 127 (215)
....+.++|..- ..+..++||||.|--..--.+- ..+| -+.+|.|+|+.+++.|+..+..+ ++. ..+
T Consensus 60 Yih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYg--wrfvGseid~~sl~sA~~ii~~N~~l~-----~~I 132 (292)
T COG3129 60 YIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYG--WRFVGSEIDSQSLSSAKAIISANPGLE-----RAI 132 (292)
T ss_pred HHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeec--ceeecCccCHHHHHHHHHHHHcCcchh-----hhe
Confidence 345555555421 2345689999998654332221 1222 58999999999999999998876 332 345
Q ss_pred EEEeCCCCCC-----CCCCCCccEEEEccCCCCchHHH
Q 028002 128 SVHVGDGRKG-----WPEFAPYDAIHVGAAAPEIPQAL 160 (215)
Q Consensus 128 ~~~~~d~~~~-----~~~~~~~D~V~~~~~~~~~~~~~ 160 (215)
++....-... .-..+.||.+.|+++++.-.+++
T Consensus 133 ~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~~da 170 (292)
T COG3129 133 RLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSAADA 170 (292)
T ss_pred eEEeccCccccccccccccceeeeEecCCCcchhHHHH
Confidence 5554332221 12247899999999998766544
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0047 Score=43.32 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=61.4
Q ss_pred CccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------CCCCCCCccEEEEcc
Q 028002 78 GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------GWPEFAPYDAIHVGA 151 (215)
Q Consensus 78 G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~D~V~~~~ 151 (215)
|.|..+..+++..| .+++++|.++...+.+++. +.. .++..+-.+ .......+|+|+...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~----Ga~--------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~ 66 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKEL----GAD--------HVIDYSDDDFVEQIRELTGGRGVDVVIDCV 66 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT----TES--------EEEETTTSSHHHHHHHHTTTSSEEEEEESS
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh----ccc--------ccccccccccccccccccccccceEEEEec
Confidence 46888999999987 8999999999998888652 211 122221111 111224799999988
Q ss_pred CCCCchHHHHHhcCCCcEEEEEeCC
Q 028002 152 AAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 152 ~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
......+...++|+++|.+++....
T Consensus 67 g~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 67 GSGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp SSHHHHHHHHHHEEEEEEEEEESST
T ss_pred CcHHHHHHHHHHhccCCEEEEEEcc
Confidence 8778889999999999999986544
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0084 Score=49.27 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=63.7
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC--CCCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GWPEFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~ 142 (215)
..++.+||-+|+|. |..+..+++..|. .++++++.++...+.+++ + +.. .-++....+... ......
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~-~~vi~~~~~~~~~~~~~~-~---ga~-----~~i~~~~~~~~~~~~~~~~~ 230 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGA-EDVIGVDPSPERLELAKA-L---GAD-----FVINSGQDDVQEIRELTSGA 230 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH-h---CCC-----EEEcCCcchHHHHHHHhCCC
Confidence 57789999999876 7778888888763 349999999888777643 2 211 001110111000 011224
Q ss_pred CccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 143 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+|+|+.............+.|+++|.+++.
T Consensus 231 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 231 GADVAIECSGNTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 6999998766665667778999999999864
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0088 Score=48.01 Aligned_cols=70 Identities=16% Similarity=0.067 Sum_probs=51.6
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC--CCCccEEE
Q 028002 71 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIH 148 (215)
Q Consensus 71 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~V~ 148 (215)
+++|+.||.|.++..+... |. ..+.++|+++.+++..+.++.. .+..+|+.+.... ...+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~-~~v~a~e~~~~a~~~~~~N~~~------------~~~~~Di~~~~~~~~~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GF-EIVAANEIDKSAAETYEANFPN------------KLIEGDITKIDEKDFIPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CC-EEEEEEeCCHHHHHHHHHhCCC------------CCccCccccCchhhcCCCCCEEE
Confidence 6899999999999988876 43 5789999999998888776532 1344555443321 25799999
Q ss_pred EccCCC
Q 028002 149 VGAAAP 154 (215)
Q Consensus 149 ~~~~~~ 154 (215)
...+++
T Consensus 68 ~gpPCq 73 (275)
T cd00315 68 GGFPCQ 73 (275)
T ss_pred eCCCCh
Confidence 998774
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.074 Score=40.68 Aligned_cols=112 Identities=15% Similarity=0.191 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCcc----HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTG----YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G----~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
.++++..|+.... ...+++.+|+.| .+++..|.+ ...+++++|-.++......++.+...+.. +.++|+
T Consensus 29 ~aEfISAlAAG~n-AkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~~~~~-----~~vEfv 101 (218)
T PF07279_consen 29 VAEFISALAAGWN-AKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGEAGLS-----DVVEFV 101 (218)
T ss_pred HHHHHHHHhcccc-ceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhhcccc-----ccceEE
Confidence 6778888873222 346777765543 233333333 23489999999999888888888766553 567888
Q ss_pred eCCCC-CCCCCCCCccEEEEccCCCCchHHHHHhcC--CCcEEEEE
Q 028002 131 VGDGR-KGWPEFAPYDAIHVGAAAPEIPQALIDQLK--PGGRMVIP 173 (215)
Q Consensus 131 ~~d~~-~~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk--~gG~lv~~ 173 (215)
.++.. +..+.....|.++.+...+++..++.+.++ |.|-+++.
T Consensus 102 vg~~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~ 147 (218)
T PF07279_consen 102 VGEAPEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVVC 147 (218)
T ss_pred ecCCHHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEEE
Confidence 88754 334444679999999988877756665544 45766554
|
The function of this family is unknown. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.039 Score=43.34 Aligned_cols=103 Identities=20% Similarity=0.212 Sum_probs=57.6
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC---CCCC-c
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFAP-Y 144 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~-~ 144 (215)
...||++|+|+|..++.++...+ .+|+..|..... ...+.+...+.....-....+.+..-++..... -.+. +
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLG--AEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhc--ceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 45799999999988888887654 678888865433 222222222111100000133333333332111 1133 8
Q ss_pred cEEEEccCC------CCchHHHHHhcCCCcEEEEEe
Q 028002 145 DAIHVGAAA------PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 145 D~V~~~~~~------~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
|+|++..+. +.+..-+..+|..+|.+++..
T Consensus 164 DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred cEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 988776654 445567788888888555543
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.041 Score=44.88 Aligned_cols=96 Identities=23% Similarity=0.269 Sum_probs=63.8
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC-C--CCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR-K--GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~-~--~~~~~ 141 (215)
+.++.+||..|+|. |..+..+++..| .++++++.++...+.+++ .+. ..+-....... . .....
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~----~g~------~~~~~~~~~~~~~~~~~~~~ 230 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE----LGA------DEVLNSLDDSPKDKKAAGLG 230 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCC------CEEEcCCCcCHHHHHHHhcC
Confidence 56778999988874 888888888875 569999999988777643 221 11100000000 0 01122
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+.........+.+.+.|+++|.++..
T Consensus 231 ~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 231 GGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 57999987765556778889999999999875
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.032 Score=48.48 Aligned_cols=93 Identities=25% Similarity=0.361 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe---CCCCC-------
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV---GDGRK------- 136 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~---~d~~~------- 136 (215)
++.+|+-+|+|. |..+..+++.+| ..++++|.++..++.+++ + +. ..+.+.. ++...
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~-l---Ga------~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS-M---GA------EFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-c---CC------eEEeccccccccccccceeecC
Confidence 468999999998 888888888876 469999999998777764 2 11 1111110 00000
Q ss_pred -C--------CC-CCCCccEEEEcc-----CCCC-chHHHHHhcCCCcEEEE
Q 028002 137 -G--------WP-EFAPYDAIHVGA-----AAPE-IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 137 -~--------~~-~~~~~D~V~~~~-----~~~~-~~~~~~~~Lk~gG~lv~ 172 (215)
. .. ....+|+|+... ..+. +.++..+.+|||++++=
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 0 01 114699998777 2232 44778999999999873
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.008 Score=49.16 Aligned_cols=102 Identities=22% Similarity=0.158 Sum_probs=61.5
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---CCCCCccE
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFAPYDA 146 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~D~ 146 (215)
.++||+|.|.|.-..++-..+..-..++.+|.|+..-+......... ..........|+.... +..+.|++
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv------~t~~td~r~s~vt~dRl~lp~ad~ytl 188 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV------STEKTDWRASDVTEDRLSLPAADLYTL 188 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc------ccccCCCCCCccchhccCCCccceeeh
Confidence 57999999999776666555432367888888887655544332211 1122333334443322 22256776
Q ss_pred EEEccCC-----C----CchHHHHHhcCCCcEEEEEeCCC
Q 028002 147 IHVGAAA-----P----EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 147 V~~~~~~-----~----~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
++...-+ + ..++.++.++.|||.|++..++.
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 6554432 1 25577899999999999987654
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.011 Score=49.65 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=65.8
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC--CCCC---CC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~--d~~~---~~ 138 (215)
.++++.+||-+|+|. |..+..+++..|. .+|+++|.++...+.+++ .+.. .-++.... +..+ ..
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~~----~Ga~-----~~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDINPEKFEKGKE----MGIT-----DFINPKDSDKPVHERIREM 264 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHH----cCCc-----EEEecccccchHHHHHHHH
Confidence 367889999999987 8888888888753 369999999998888754 2211 01111100 0111 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
.. +.+|+|+...............+++| |.+++.
T Consensus 265 ~~-~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 265 TG-GGVDYSFECAGNVEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred hC-CCCCEEEECCCChHHHHHHHHhhhcCCCEEEEE
Confidence 12 26999998877767778888899997 887663
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.061 Score=44.38 Aligned_cols=98 Identities=17% Similarity=0.223 Sum_probs=62.7
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC--CCCCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--KGWPEFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~--~~~~~~~ 142 (215)
..++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ + +.. .-+.....+.. .......
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~---Ga~-----~~i~~~~~~~~~~~~~~~~~ 227 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDINSEKLALAKS-L---GAM-----QTFNSREMSAPQIQSVLREL 227 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH-c---CCc-----eEecCcccCHHHHHHHhcCC
Confidence 56788999999987 8888888888753 347899998888777643 2 211 00110000100 0011123
Q ss_pred Ccc-EEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 143 PYD-AIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 143 ~~D-~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+| +|+.............+.|++||.+++.
T Consensus 228 ~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 228 RFDQLILETAGVPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CCCeEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 577 7776666556778889999999998875
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.042 Score=45.27 Aligned_cols=75 Identities=27% Similarity=0.371 Sum_probs=51.3
Q ss_pred ccccC-CcccchhHHHHH--------HHHHHHhcCCC-CCEEEEEcCCccHHHHHHHHHh---CC----CCeEEEEecCh
Q 028002 41 MAIGY-NATISAPHMHAT--------CLQLLEENLKP-GMHALDIGSGTGYLTACFALMV---GP----QGRAVGVEHIP 103 (215)
Q Consensus 41 ~~~~~-~~~~~~~~~~~~--------~l~~l~~~~~~-~~~vLdiG~G~G~~~~~l~~~~---~~----~~~v~~~D~s~ 103 (215)
.++|. |.+++.|.+... +++.+...-.| ...++|+|+|+|.++..+++.+ .| ..++..+|+|+
T Consensus 40 ~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 40 VKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred hhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence 34443 446778775543 33344433333 4679999999999999887655 22 26899999999
Q ss_pred HHHHHHHHHHHh
Q 028002 104 ELVVSSIQNIEK 115 (215)
Q Consensus 104 ~~~~~a~~~~~~ 115 (215)
...+.=+++++.
T Consensus 120 ~L~~~Qk~~L~~ 131 (370)
T COG1565 120 ELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHHhc
Confidence 988877777655
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.014 Score=47.28 Aligned_cols=96 Identities=21% Similarity=0.210 Sum_probs=63.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe--CCCCCCCCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV--GDGRKGWPEF 141 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~--~d~~~~~~~~ 141 (215)
.+.||.+|--.|.|. |.++..+++++| .+|+++|.+...-+.+-+.+ +. +..-... .|......
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kkeea~~~L---GA------d~fv~~~~d~d~~~~~~-- 244 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKEEAIKSL---GA------DVFVDSTEDPDIMKAIM-- 244 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHHHHHHhc---Cc------ceeEEecCCHHHHHHHH--
Confidence 378999998888876 999999999987 79999999986655554443 22 1221111 11111111
Q ss_pred CCccEEEEccC--CCCchHHHHHhcCCCcEEEEE
Q 028002 142 APYDAIHVGAA--APEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~--~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+..|.++.... ..+-++.+..+||++|.+++.
T Consensus 245 ~~~dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 245 KTTDGGIDTVSNLAEHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred HhhcCcceeeeeccccchHHHHHHhhcCCEEEEE
Confidence 34555443333 566778899999999999885
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.057 Score=43.64 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCC------CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHH
Q 028002 54 MHATCLQLLEENLKP------GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 106 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~------~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 106 (215)
....+++.|..+.++ ..+||.-|||.|+++..++.. |. +.-|-|.|--|+
T Consensus 130 ~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~-G~--~~qGNEfSy~Ml 185 (369)
T KOG2798|consen 130 LYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL-GF--KCQGNEFSYFML 185 (369)
T ss_pred hhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh-cc--cccccHHHHHHH
Confidence 345566666544433 568999999999999999988 44 344446665554
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.016 Score=48.59 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=64.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC--CCCC---CC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~--d~~~---~~ 138 (215)
.+.++.+||-.|+|. |..+..+++..|. ..++++|.++...+.+++ .+.. .-+..... +... ..
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~-~~vi~~~~~~~~~~~a~~----lGa~-----~~i~~~~~~~~~~~~v~~~ 259 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGA-SQIIGVDINPEKAEKAKT----FGVT-----DFINPNDLSEPIQQVIKRM 259 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH----cCCc-----EEEcccccchHHHHHHHHH
Confidence 367789999999987 8888888888753 368899988888777743 2221 00111100 1100 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
.. +.+|+|+.............+.+++| |.+++.
T Consensus 260 ~~-~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 260 TG-GGADYSFECVGDTGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred hC-CCCCEEEECCCChHHHHHHHHhhccCCCEEEEE
Confidence 12 36999998777665677889999998 999763
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.12 Score=43.72 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=64.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CCCCC---CCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRK---GWP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d~~~---~~~ 139 (215)
.+.++.+||-.|+|. |..+..+++..|. ..++.+|.++..++.+++. +. ..+.... .+... ...
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga-~~vi~~d~~~~r~~~a~~~----Ga------~~v~~~~~~~~~~~v~~~~ 250 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGA-AVVIVGDLNPARLAQARSF----GC------ETVDLSKDATLPEQIEQIL 250 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHc----CC------eEEecCCcccHHHHHHHHc
Confidence 367788998899986 8888888888764 4566778888888877652 21 1111000 01111 011
Q ss_pred CCCCccEEEEccCCC--------------CchHHHHHhcCCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAAP--------------EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~--------------~~~~~~~~~Lk~gG~lv~~ 173 (215)
....+|+|+.....+ ..++.+.+++++||.+++.
T Consensus 251 ~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 251 GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 224689998777654 3678889999999999884
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.028 Score=46.80 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=58.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
..++.+||-.|+|. |..+..+++..| .++++++.++.....+.+. .+...-+..... ...... . +.+
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~~~~---~Ga~~vi~~~~~----~~~~~~--~-~~~ 248 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEAINR---LGADSFLVSTDP----EKMKAA--I-GTM 248 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhHHHh---CCCcEEEcCCCH----HHHHhh--c-CCC
Confidence 45788999999987 888888898876 4688887776543322222 221100000000 001111 1 258
Q ss_pred cEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 145 DAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
|+|+.........+...+.|++||.++..
T Consensus 249 D~vid~~g~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 249 DYIIDTVSAVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CEEEECCCCHHHHHHHHHHhcCCcEEEEe
Confidence 99997766545667789999999998864
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.094 Score=43.37 Aligned_cols=98 Identities=20% Similarity=0.232 Sum_probs=62.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC---CCCC---C
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRK---G 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~---d~~~---~ 137 (215)
.+.++.+||-.|+|. |..+..+++..| .++++++.++..++.+++ + +.. .-+..... +..+ .
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~-~---Ga~-----~~i~~~~~~~~~~~~~~~~ 231 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG-F---GAD-----LTLNPKDKSAREVKKLIKA 231 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-h---CCc-----eEecCccccHHHHHHHHHh
Confidence 367789999999987 888888888875 479999999988887754 2 211 01111111 0000 0
Q ss_pred CCCCCCcc----EEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 WPEFAPYD----AIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D----~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+| +|+.........+.+.++|++||.+++.
T Consensus 232 ~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 232 FAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVV 271 (349)
T ss_pred hcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEE
Confidence 01112344 6776655555667788999999999874
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.005 Score=49.19 Aligned_cols=95 Identities=24% Similarity=0.312 Sum_probs=67.4
Q ss_pred CCCCEEEEEcCCccHHHH-HHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTA-CFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+..|.|+-+|-|+++. .+... |. ..|+++|.++..++..++++..+.+. ++..+..+|....-+. ...|
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~a-gA-k~V~A~EwNp~svEaLrR~~~~N~V~-----~r~~i~~gd~R~~~~~-~~Ad 264 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTA-GA-KTVFACEWNPWSVEALRRNAEANNVM-----DRCRITEGDNRNPKPR-LRAD 264 (351)
T ss_pred cccchhhhhhcccceEEeehhhcc-Cc-cEEEEEecCHHHHHHHHHHHHhcchH-----HHHHhhhccccccCcc-ccch
Confidence 445789999999999999 55554 44 78999999999999999998886554 4445556665544333 6778
Q ss_pred EEEEcc--CCCCchHHHHHhcCCCcE
Q 028002 146 AIHVGA--AAPEIPQALIDQLKPGGR 169 (215)
Q Consensus 146 ~V~~~~--~~~~~~~~~~~~Lk~gG~ 169 (215)
.|.... +.+.-...+.+.|||.|-
T Consensus 265 rVnLGLlPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 265 RVNLGLLPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred heeeccccccccchHHHHHHhhhcCC
Confidence 876543 233334556788888654
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.031 Score=46.55 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=62.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC--C---CCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG--R---KGWP 139 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~--~---~~~~ 139 (215)
+.++.+||-+|+|. |..+..+++..|. .+|++++.++...+.+++ + +.. .-+.....+. . ....
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~~~~-~---ga~-----~~i~~~~~~~~~~~~~~~~~ 251 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGA-SRIIGVDINEDKFEKAKE-F---GAT-----DFINPKDSDKPVSEVIREMT 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-c---CCC-----cEeccccccchHHHHHHHHh
Confidence 67789999999876 7777888888753 379999999888777753 2 211 0011110000 0 0111
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
. ..+|+|+.............+.++++ |.++..
T Consensus 252 ~-~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 252 G-GGVDYSFECTGNADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred C-CCCCEEEECCCChHHHHHHHHhcccCCCEEEEE
Confidence 2 46899997666555667788899885 988764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.12 Score=42.65 Aligned_cols=98 Identities=22% Similarity=0.285 Sum_probs=63.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 141 (215)
++++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ .+.. .-+.....+... .....
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~g~~-----~~v~~~~~~~~~~i~~~~~~ 233 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGA-GRIIAVGSRPNRVELAKE----YGAT-----DIVDYKNGDVVEQILKLTGG 233 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCCc-----eEecCCCCCHHHHHHHHhCC
Confidence 67788999999875 7788888888754 469999999887777654 2211 001110111100 01122
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+....-......+.+.|+++|.++..
T Consensus 234 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 234 KGVDAVIIAGGGQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCCcEEEECCCCHHHHHHHHHHhhcCCEEEEe
Confidence 46999997666555678889999999998853
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.094 Score=41.06 Aligned_cols=98 Identities=26% Similarity=0.332 Sum_probs=63.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC--CCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~ 142 (215)
..++.+||..|+|+ |.....+++..| .++++++.++...+.+++. +.. .-+.....+.... .....
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g~~-----~~~~~~~~~~~~~~~~~~~~ 200 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKEL----GAD-----HVIDYKEEDLEEELRLTGGG 200 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHh----CCc-----eeccCCcCCHHHHHHHhcCC
Confidence 36788999999996 777777787765 6899999998777666432 111 0011000000000 11225
Q ss_pred CccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 143 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
.+|+++...........+.+.|+++|.++...
T Consensus 201 ~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 201 GADVVIDAVGGPETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCCEEEECCCCHHHHHHHHHhcccCCEEEEEc
Confidence 79999987665456777889999999998754
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.11 Score=42.49 Aligned_cols=102 Identities=19% Similarity=0.150 Sum_probs=71.6
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC--
Q 028002 57 TCLQLLEENLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-- 133 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d-- 133 (215)
..+.... ++++.+|.-+|||. |..++.-++..+. .+++++|+++..+++|++. +. -+++...
T Consensus 176 av~nta~--v~~G~tvaV~GlGgVGlaaI~gA~~agA-~~IiAvD~~~~Kl~~A~~f----GA--------T~~vn~~~~ 240 (366)
T COG1062 176 AVVNTAK--VEPGDTVAVFGLGGVGLAAIQGAKAAGA-GRIIAVDINPEKLELAKKF----GA--------THFVNPKEV 240 (366)
T ss_pred Hhhhccc--CCCCCeEEEEeccHhHHHHHHHHHHcCC-ceEEEEeCCHHHHHHHHhc----CC--------ceeecchhh
Confidence 4445554 89999999999997 7777777777655 7999999999999999763 22 1222221
Q ss_pred --CCCC--CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 134 --GRKG--WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 134 --~~~~--~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+.+. ....+..|.++......+.++.....+.++|..++.
T Consensus 241 ~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 241 DDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred hhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEE
Confidence 1110 011246788877777777888888899899988874
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.15 Score=42.65 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=64.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe--CCCCC---CC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV--GDGRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~--~d~~~---~~ 138 (215)
.++++.+||-.|+|. |..+..+++..|. .+|+++|.++...+.+++ .+.. .-++... .+... ..
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~----~Ga~-----~~i~~~~~~~~~~~~v~~~ 251 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKK----LGAT-----DCVNPNDYDKPIQEVIVEI 251 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCC-----eEEcccccchhHHHHHHHH
Confidence 367789999999986 8888888888753 379999999998887754 2221 0111110 00000 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
.. +.+|+|+.............+.++++ |.+++.
T Consensus 252 ~~-~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 252 TD-GGVDYSFECIGNVNVMRAALECCHKGWGESIII 286 (368)
T ss_pred hC-CCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEE
Confidence 11 36899998766656677788999886 988764
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.12 Score=42.05 Aligned_cols=90 Identities=19% Similarity=0.309 Sum_probs=61.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
+.++.+||-.|+|. |..+..+++..| .++++++.++...+.+++ + +.. .+... ... .....+
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G--~~vi~~~~~~~~~~~~~~-~---g~~------~~~~~----~~~-~~~~~~ 215 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTG--PDVVLVGRHSEKLALARR-L---GVE------TVLPD----EAE-SEGGGF 215 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-c---CCc------EEeCc----ccc-ccCCCC
Confidence 67788999998775 677777787765 468999988888777765 2 221 11111 111 122569
Q ss_pred cEEEEccCCCCchHHHHHhcCCCcEEEE
Q 028002 145 DAIHVGAAAPEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~gG~lv~ 172 (215)
|+++....-....+.+.+.|+++|.++.
T Consensus 216 d~vid~~g~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 216 DVVVEATGSPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred CEEEECCCChHHHHHHHHHhhcCCEEEE
Confidence 9999875554556778889999999987
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.18 Score=42.78 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=64.4
Q ss_pred CCCCCEEEEEc-CCc-cHHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC----CCCC--
Q 028002 66 LKPGMHALDIG-SGT-GYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG----DGRK-- 136 (215)
Q Consensus 66 ~~~~~~vLdiG-~G~-G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~----d~~~-- 136 (215)
++++.+|+-+| +|. |..+..+++..|. ..+++++|.++..++.+++.+...... .+ ....++.. +...
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~--~G-a~~~~i~~~~~~~~~~~v 249 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAAS--RG-IELLYVNPATIDDLHATL 249 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccc--cC-ceEEEECCCccccHHHHH
Confidence 57788999997 565 8888888887532 147999999999999887643210000 00 01111111 1111
Q ss_pred -CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 137 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 -~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.......+|+|+.............+.++++|.+++.
T Consensus 250 ~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 250 MELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEE
Confidence 0112246999988665556677888999998876654
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.14 Score=40.67 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=62.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
.+.++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++. +.. +.+..... . ......
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~~~----g~~-----~~~~~~~~---~-~~~~~~ 159 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAEAL----GPA-----DPVAADTA---D-EIGGRG 159 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHHHc----CCC-----ccccccch---h-hhcCCC
Confidence 467788999999876 7777888888753 2499999988887766542 100 11100000 0 112246
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+|+.............+.|+++|.++..
T Consensus 160 ~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 160 ADVVIEASGSPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred CCEEEEccCChHHHHHHHHHhcCCcEEEEE
Confidence 999987655555667889999999999864
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.12 Score=42.77 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=63.3
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-CCCC---CC
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~---~~ 138 (215)
.++++.+||-.|+ | .|..+..+++..| .++++++.++...+.+++.+ +.. .-++.... +... ..
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~~l---Ga~-----~vi~~~~~~~~~~~i~~~ 224 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKNKL---GFD-----EAFNYKEEPDLDAALKRY 224 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhc---CCC-----EEEECCCcccHHHHHHHH
Confidence 3678899999998 4 4888889999876 57999998888777665332 211 01111101 1111 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.. +.+|+|+....- .....+.+.|+++|.+++.
T Consensus 225 ~~-~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 225 FP-EGIDIYFDNVGG-DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CC-CCcEEEEECCCH-HHHHHHHHHhccCCEEEEE
Confidence 12 468999876553 4667889999999998864
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.082 Score=43.96 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=59.3
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
.++.+|+-.|+|. |..+..+++..| .++++++.++.....+.+.+ +.. .+ +...+..........+|
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~~~---Ga~------~~-i~~~~~~~~~~~~~~~D 246 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALEHL---GAD------DY-LVSSDAAEMQEAADSLD 246 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhc---CCc------EE-ecCCChHHHHHhcCCCc
Confidence 5788999888876 888888888875 46888887776555443322 211 11 10011000000013589
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 146 AIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+.........+.+.+.|+++|.++..
T Consensus 247 ~vid~~g~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 247 YIIDTVPVFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred EEEECCCchHHHHHHHHHhccCCEEEEE
Confidence 9987766555677788999999998874
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.031 Score=43.19 Aligned_cols=89 Identities=17% Similarity=0.155 Sum_probs=61.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCC----C----CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--
Q 028002 69 GMHALDIGSGTGYLTACFALMVGP----Q----GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-- 138 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~----~----~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-- 138 (215)
-.+++|+++..|+.+..+++.+.. . .+++++|+.+-+ +.+.+.-+++|++...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------------PI~GV~qlq~DIT~~sta 104 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------------PIEGVIQLQGDITSASTA 104 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------------ccCceEEeecccCCHhHH
Confidence 368999999999999999887732 1 238999975521 1256777788877521
Q ss_pred ------CCCCCccEEEEccCC-----CCch------------HHHHHhcCCCcEEEEEe
Q 028002 139 ------PEFAPYDAIHVGAAA-----PEIP------------QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 139 ------~~~~~~D~V~~~~~~-----~~~~------------~~~~~~Lk~gG~lv~~~ 174 (215)
...++.|+|+|++.. |++- .-...+|||||.++.-+
T Consensus 105 e~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 105 EAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred HHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 233689999999853 3222 12357899999998643
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.32 Score=35.80 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+.+.+.....++.+|+-+||=+-...+.- ...+..+++..|.+....... .+ .++.-|.
T Consensus 12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~~~---------------~~-~F~fyD~ 73 (162)
T PF10237_consen 12 AEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQFG---------------GD-EFVFYDY 73 (162)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHhcC---------------Cc-ceEECCC
Confidence 34444555433456789999999875544333 223557899999987543221 12 3445554
Q ss_pred CCCC--C--CCCCccEEEEccCCCC------chHHHHHhcCCCcEEEEEeCCC
Q 028002 135 RKGW--P--EFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 135 ~~~~--~--~~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.... + -.++||+|++++++-. ....+..++++++.+++.++.-
T Consensus 74 ~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 74 NEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred CChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 4321 1 1268999999999821 1234556678999999987653
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.063 Score=44.00 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
++.+||..|+|. |..+..+++..|. .++++++.++...+.+++. +.. .-+.....+........+.+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~-~~v~~~~~s~~~~~~~~~~----g~~-----~vi~~~~~~~~~~~~~~~~vd~ 234 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA-AEIVATDLADAPLAVARAM----GAD-----ETVNLARDPLAAYAADKGDFDV 234 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHc----CCC-----EEEcCCchhhhhhhccCCCccE
Confidence 688999998876 7777888887653 3789999888877755431 111 0000000011111112245999
Q ss_pred EEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 147 IHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 147 V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
++.........+.+.+.|+++|.++..
T Consensus 235 vld~~g~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 235 VFEASGAPAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 997765445567889999999999864
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.13 Score=44.58 Aligned_cols=95 Identities=22% Similarity=0.205 Sum_probs=65.5
Q ss_pred CEEEEEcCCccHHHHHHHHHh---CCCCeEEEEecChHHHHHHHH-HHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 70 MHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQ-NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~-~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..|+-+|+|.|-+.....+.. .-+.+++++|.++.++-..+. ++..+. .+++++..|.....++....|
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~-------~~Vtii~~DMR~w~ap~eq~D 441 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWD-------NRVTIISSDMRKWNAPREQAD 441 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhc-------CeeEEEeccccccCCchhhcc
Confidence 357899999997766554332 223689999999998766543 333332 689999999987655447889
Q ss_pred EEEEc----cCC----CCchHHHHHhcCCCcEEE
Q 028002 146 AIHVG----AAA----PEIPQALIDQLKPGGRMV 171 (215)
Q Consensus 146 ~V~~~----~~~----~~~~~~~~~~Lk~gG~lv 171 (215)
++++- ... ++.++.+.+.|||.|+.|
T Consensus 442 I~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 442 IIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred chHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 88532 222 345566789999997665
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.093 Score=44.43 Aligned_cols=87 Identities=16% Similarity=0.112 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+.+|+-+|+|. |......++.+| .+|+++|.++.....+.. .+ ..+. +..+.. ...|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A~~----~G---------~~v~--~leeal---~~aD 252 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEAAM----DG---------FRVM--TMEEAA---KIGD 252 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHHHh----cC---------CEeC--CHHHHH---hcCC
Confidence 4688999999998 877777777765 589999998865443332 11 1111 111111 3469
Q ss_pred EEEEccCCCCchH-HHHHhcCCCcEEEEE
Q 028002 146 AIHVGAAAPEIPQ-ALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~-~~~~~Lk~gG~lv~~ 173 (215)
+|+......+++. .....+|+|++++..
T Consensus 253 VVItaTG~~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 253 IFITATGNKDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred EEEECCCCHHHHHHHHHhcCCCCcEEEEE
Confidence 9888777767665 478899999988864
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.28 Score=40.93 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=63.7
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC--CCCC---CCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRK---GWP 139 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~--d~~~---~~~ 139 (215)
++++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+.. .-+..... +... ...
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~-~~vi~~~~~~~~~~~~~~----lGa~-----~~i~~~~~~~~~~~~v~~~~ 253 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGA-SRIIGIDINPDKFELAKK----FGAT-----DCVNPKDHDKPIQQVLVEMT 253 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCCC-----EEEcccccchHHHHHHHHHh
Confidence 67889999999876 7888888888753 379999999998887753 2221 01111110 0100 011
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
. +.+|+|+....-........+.|+++ |.++..
T Consensus 254 ~-~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 254 D-GGVDYTFECIGNVKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred C-CCCcEEEECCCChHHHHHHHHhhccCCCeEEEE
Confidence 2 36999998766555677788999987 988764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.06 Score=44.88 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=63.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC--CCCC---CC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~--d~~~---~~ 138 (215)
.+.++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+.. .-+..... +... ..
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~~~~~~~~~~~----~Ga~-----~~i~~~~~~~~~~~~v~~~ 253 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDLNPSKFEQAKK----FGVT-----EFVNPKDHDKPVQEVIAEM 253 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCCc-----eEEcccccchhHHHHHHHH
Confidence 367889999999876 7788888888753 379999999988887754 2211 01111100 0000 11
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
.. +.+|+++.............+.+++| |.+++.
T Consensus 254 ~~-~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 254 TG-GGVDYSFECTGNIDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred hC-CCCCEEEECCCChHHHHHHHHHhhcCCCEEEEE
Confidence 12 36899987765555667788899996 988764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.39 Score=39.13 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=61.9
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-CCCCC--CC
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKG--WP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~~--~~ 139 (215)
.++++.+||-.|+ | .|..+..+++..| .++++++.++...+.+++ .+.. .-+..... +.... ..
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~~----lGa~-----~vi~~~~~~~~~~~~~~~ 203 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLKK----LGFD-----VAFNYKTVKSLEETLKKA 203 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCC-----EEEeccccccHHHHHHHh
Confidence 3678899999984 4 4888888898875 578999988887777643 2221 00111110 11110 01
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+.+|+|+....- .......++|+++|.++..
T Consensus 204 ~~~gvdvv~d~~G~-~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 204 SPDGYDCYFDNVGG-EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CCCCeEEEEECCCH-HHHHHHHHHhCcCcEEEEe
Confidence 11469999876554 3457889999999999864
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.32 Score=39.96 Aligned_cols=98 Identities=24% Similarity=0.294 Sum_probs=62.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe-EEEeCCC---C---C
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDG---R---K 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v-~~~~~d~---~---~ 136 (215)
.+.++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ + +.. .+ .....+. . .
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~-~~v~~~~~~~~~~~~~~~-~---g~~------~vi~~~~~~~~~~~~~~~ 227 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGA-TKVVVTDIDPSRLEFAKE-L---GAT------HTVNVRTEDTPESAEKIA 227 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH-c---CCc------EEeccccccchhHHHHHH
Confidence 367888998888876 7788888888752 238888888877666643 2 211 11 1111110 0 0
Q ss_pred CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 137 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.......+|+|+.............+.|+++|.++..
T Consensus 228 ~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 228 ELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred HHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 1112245999997765544677889999999998864
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.33 Score=39.84 Aligned_cols=99 Identities=21% Similarity=0.298 Sum_probs=60.8
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
...++.+||..|+|. |..+..+++..|. ..+++++.++...+.+++. +.. .-+.....+... ....
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~~----g~~-----~vi~~~~~~~~~~i~~~~~ 233 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKEA----GAT-----DIINPKNGDIVEQILELTG 233 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHh----CCc-----EEEcCCcchHHHHHHHHcC
Confidence 356788998888764 7777888888642 3688888887766665432 111 001111111101 0112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+|+++.............+.|+++|.++..
T Consensus 234 ~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 234 GRGVDCVIEAVGFEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEE
Confidence 256999987654445677888999999998854
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.1 Score=44.49 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=58.7
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
-.+.+|+-+|+|. |......++.+| .+|+.+|.++.....+.. .+ ..+. +..+.. ..+|
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~----~G---------~~v~--~l~eal---~~aD 269 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAM----DG---------FRVM--TMEEAA---ELGD 269 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHh----cC---------CEec--CHHHHH---hCCC
Confidence 3688999999997 777777777665 589999999876444322 11 1111 111111 3589
Q ss_pred EEEEccCCCCchH-HHHHhcCCCcEEEEE
Q 028002 146 AIHVGAAAPEIPQ-ALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~-~~~~~Lk~gG~lv~~ 173 (215)
+|+......++++ .....+|+|++++..
T Consensus 270 VVI~aTG~~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 270 IFVTATGNKDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred EEEECCCCHHHHHHHHHhcCCCCCEEEEc
Confidence 9988876666665 678899999988764
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.097 Score=43.93 Aligned_cols=93 Identities=22% Similarity=0.143 Sum_probs=58.9
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHH-HHHHHHHHHhhcccCcccCCCeEEEeC-CCCCCCCCCCC
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPEL-VVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGWPEFAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~-~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~ 143 (215)
.++.+|+-.|+|. |..+..+++..| .++++++.++.. .+.++ ..+.. . ++.. +........+.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a~----~lGa~------~--~i~~~~~~~v~~~~~~ 242 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAID----RLGAD------S--FLVTTDSQKMKEAVGT 242 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHHH----hCCCc------E--EEcCcCHHHHHHhhCC
Confidence 4688999999986 888888898876 468888876543 34432 22221 1 1110 00000000025
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+|+...........+.+.++++|.++..
T Consensus 243 ~D~vid~~G~~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 243 MDFIIDTVSAEHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred CcEEEECCCcHHHHHHHHHhhcCCCEEEEE
Confidence 899998766555667888999999999864
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.36 Score=40.02 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=61.0
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe-EEEeCCCC------CCC
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGR------KGW 138 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v-~~~~~d~~------~~~ 138 (215)
.++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+.. .+ .....+.. ...
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~g~~------~vi~~~~~~~~~~~~~i~~~ 244 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGA-RRVIVIDGSPERLELARE----FGAD------ATIDIDELPDPQRRAIVRDI 244 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCCC------eEEcCcccccHHHHHHHHHH
Confidence 4778999999875 7777888888753 379999988877666542 2211 11 11100000 011
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+|+.............+.|+++|.++..
T Consensus 245 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 245 TGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred hCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEE
Confidence 12246999997655445567788999999999864
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.17 Score=40.26 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=34.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhC----CCCeEEEEecChHHHH
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVG----PQGRAVGVEHIPELVV 107 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~v~~~D~s~~~~~ 107 (215)
+.++..++|+|||.|.++.+++..+. +...++.||......+
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K 61 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK 61 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc
Confidence 56778999999999999999998873 2368999998775543
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.17 Score=37.47 Aligned_cols=99 Identities=18% Similarity=0.153 Sum_probs=60.8
Q ss_pred EEcCCccHHHHHHHHHhCCCCeEEEEecCh--HHHHH---HHHHHHhhcccCcccCCCeEEEe-CCCCCCC--C--CCCC
Q 028002 74 DIGSGTGYLTACFALMVGPQGRAVGVEHIP--ELVVS---SIQNIEKSAAAPLLKEGSLSVHV-GDGRKGW--P--EFAP 143 (215)
Q Consensus 74 diG~G~G~~~~~l~~~~~~~~~v~~~D~s~--~~~~~---a~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~--~--~~~~ 143 (215)
-+|=|.-+++..+++..+....+++.-.+. ...+. +..++..... ..+.+.. .|+.... . ....
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~------~g~~V~~~VDat~l~~~~~~~~~~ 75 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE------LGVTVLHGVDATKLHKHFRLKNQR 75 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh------cCCccccCCCCCcccccccccCCc
Confidence 467778889999999876345666655444 33332 2244443321 2343333 2444321 1 3378
Q ss_pred ccEEEEccCCCC-------------------chHHHHHhcCCCcEEEEEeCCCc
Q 028002 144 YDAIHVGAAAPE-------------------IPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 144 ~D~V~~~~~~~~-------------------~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
||.|+.+.+... ++..+.++|+++|.+.++..+..
T Consensus 76 FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~ 129 (166)
T PF10354_consen 76 FDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ 129 (166)
T ss_pred CCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 999998887533 22457889999999999987753
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.078 Score=43.48 Aligned_cols=98 Identities=22% Similarity=0.264 Sum_probs=61.8
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
...++.+||-.|+|. |..+..+++..| .+++.++.++...+.+++ + +.. .-+.....+..........
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~-~---g~~-----~~i~~~~~~~~~~~~~~~~ 228 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLARK-L---GAH-----HYIDTSKEDVAEALQELGG 228 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH-c---CCc-----EEecCCCccHHHHHHhcCC
Confidence 367788999999876 778888888875 479999998887777643 2 211 0011111111100111135
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+++.............+.|+++|.++..
T Consensus 229 ~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 229 AKLILATAPNAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred CCEEEECCCchHHHHHHHHHcccCCEEEEE
Confidence 899987544445667788999999998864
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.38 Score=40.03 Aligned_cols=95 Identities=17% Similarity=0.172 Sum_probs=63.8
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC---CCC---CC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD---GRK---GW 138 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d---~~~---~~ 138 (215)
+.++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ .+. . .++..+ ... ..
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~-~~v~~~~~~~~k~~~~~~----~g~------~--~~i~~~~~~~~~~v~~~ 250 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGC-TTIIAVDIVDSRLELAKE----LGA------T--HVINPKEEDLVAAIREI 250 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCC------c--EEecCCCcCHHHHHHHH
Confidence 56788999998876 7888888888764 369999999887766643 111 1 111111 100 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
. ...+|+|+...........+.+.|+++|.++...
T Consensus 251 ~-~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 251 T-GGGVDYALDTTGVPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred h-CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeC
Confidence 1 2469999977655566788899999999988743
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.1 Score=47.16 Aligned_cols=109 Identities=20% Similarity=0.258 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHh------CC-----CCeEEEEecChHHHHHHHH--------------HHHhhccc-C
Q 028002 67 KPGMHALDIGSGTGYLTACFALMV------GP-----QGRAVGVEHIPELVVSSIQ--------------NIEKSAAA-P 120 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~------~~-----~~~v~~~D~s~~~~~~a~~--------------~~~~~~~~-~ 120 (215)
++.-+|+|+|-|+|...+...+.. .+ .-+++++|..+-..+..++ ....+... +
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 334689999999999887776544 12 2489999976532222222 11111110 0
Q ss_pred c-----ccCC--CeEEEeCCCCCCCCCC-CCccEEEEccCC---------CCchHHHHHhcCCCcEEEEEeC
Q 028002 121 L-----LKEG--SLSVHVGDGRKGWPEF-APYDAIHVGAAA---------PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 121 ~-----~~~~--~v~~~~~d~~~~~~~~-~~~D~V~~~~~~---------~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
. +... .+++..+|+.+..... ..+|+|+.++-. .+++..+.++++|||.+..-+.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~ 207 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS 207 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh
Confidence 0 0011 4556778876644422 469999988643 2355788999999999986543
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.14 Score=44.11 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
-.+.+|+-+|+|. |......++.+| .+|+++|.++.....+.. . ...+. +..+.. ...|
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~----~---------G~~vv--~leEal---~~AD 311 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALM----E---------GYQVL--TLEDVV---SEAD 311 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHh----c---------CCeec--cHHHHH---hhCC
Confidence 4589999999998 777777777665 579999998865444322 1 11111 111111 3579
Q ss_pred EEEEccCCCCch-HHHHHhcCCCcEEEEEe
Q 028002 146 AIHVGAAAPEIP-QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~~-~~~~~~Lk~gG~lv~~~ 174 (215)
+|+......+++ ......+|+||+|+-..
T Consensus 312 VVI~tTGt~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 312 IFVTTTGNKDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred EEEECCCCccchHHHHHhcCCCCCEEEEcC
Confidence 999887777764 77899999999998753
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.35 Score=39.39 Aligned_cols=96 Identities=20% Similarity=0.240 Sum_probs=61.9
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC----CCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----GWP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~ 139 (215)
.+.++.+||..|+|. |..+..+++..|. ..+++++.++...+.+++. +. . .++..+... ...
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~~----g~------~--~~~~~~~~~~~~~~~~ 222 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGA-SRVTVAEPNEEKLELAKKL----GA------T--ETVDPSREDPEAQKED 222 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHh----CC------e--EEecCCCCCHHHHHHh
Confidence 367788999998764 7777778887652 2388898888877766431 11 1 111111111 011
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
....+|+++.............+.|+++|.++..
T Consensus 223 ~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 223 NPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred cCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence 2256999998755555677888999999998864
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.52 Score=38.87 Aligned_cols=98 Identities=23% Similarity=0.183 Sum_probs=62.8
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 141 (215)
..++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ + +.. .-+.....+..+ .....
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~-~~v~~~~~~~~~~~~~~~-~---ga~-----~~i~~~~~~~~~~l~~~~~~ 239 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGA-SKIIVSEPSEARRELAEE-L---GAT-----IVLDPTEVDVVAEVRKLTGG 239 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH-h---CCC-----EEECCCccCHHHHHHHHhCC
Confidence 67788999998775 7777788887652 378999988888777643 2 211 001111111111 01121
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+.........+.+.+.|+++|.++..
T Consensus 240 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 240 GGVDVSFDCAGVQATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CCCCEEEECCCCHHHHHHHHHhccCCCEEEEE
Confidence 35999998766555667888999999998764
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.12 Score=40.79 Aligned_cols=47 Identities=21% Similarity=0.199 Sum_probs=37.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCC-------CeEEEEecChHHHHHHHHHHHh
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQ-------GRAVGVEHIPELVVSSIQNIEK 115 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~-------~~v~~~D~s~~~~~~a~~~~~~ 115 (215)
..+|+|+|+|+|.++..+++.+... .+++.+|.|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 3699999999999999998877532 4899999999998887777755
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.22 Score=40.44 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CCCCCCCCCCCCcc
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~D 145 (215)
.+.+|+-+|+|. |......++.+| .+|+.+|.++...+.++ ..+ .++.. .+..+. ...+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~~~~~~----~~G---------~~~~~~~~l~~~---l~~aD 212 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAHLARIT----EMG---------LSPFHLSELAEE---VGKID 212 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHH----HcC---------CeeecHHHHHHH---hCCCC
Confidence 478999999987 666666666655 58999999977554443 211 12211 111111 14689
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEE
Q 028002 146 AIHVGAAAPEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~ 172 (215)
+|+...+..-+.+...+.+++|+.++=
T Consensus 213 iVI~t~p~~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 213 IIFNTIPALVLTKEVLSKMPPEALIID 239 (296)
T ss_pred EEEECCChhhhhHHHHHcCCCCcEEEE
Confidence 999876554445677788999887763
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.6 Score=37.98 Aligned_cols=91 Identities=25% Similarity=0.263 Sum_probs=59.3
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
.+.++.+||-.|+|. |..+..+++..| .++++++.++...+.+++ + +.. .+...+ .. . ...
T Consensus 164 ~~~~~~~vlV~g~g~vg~~~~~la~~~g--~~v~~~~~~~~~~~~~~~-~---g~~--------~~~~~~--~~-~-~~~ 225 (329)
T cd08298 164 GLKPGQRLGLYGFGASAHLALQIARYQG--AEVFAFTRSGEHQELARE-L---GAD--------WAGDSD--DL-P-PEP 225 (329)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEcCChHHHHHHHH-h---CCc--------EEeccC--cc-C-CCc
Confidence 367788898888875 666677777765 578888888876666633 2 211 111111 00 1 246
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+++.........+.+.+.|+++|.++..
T Consensus 226 vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 226 LDAAIIFAPVGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred ccEEEEcCCcHHHHHHHHHHhhcCCEEEEE
Confidence 898876544445678889999999999863
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.58 Score=38.08 Aligned_cols=95 Identities=21% Similarity=0.306 Sum_probs=61.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe-EEEeCCCCCCCCCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRKGWPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~ 143 (215)
+.++.+||-.|+|. |..+..+++..| .++++++.++...+.+++ + +. ..+ .....+.... .. ..
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~-~---g~------~~~~~~~~~~~~~~-~~-~~ 225 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARK-L---GA------DEVVDSGAELDEQA-AA-GG 225 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-h---CC------cEEeccCCcchHHh-cc-CC
Confidence 67788999999874 777777888765 578999988887776643 2 11 111 0000011001 12 46
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+++...........+.+.|+++|.++...
T Consensus 226 ~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 226 ADVILVTVVSGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CCEEEECCCcHHHHHHHHHhcccCCEEEEEC
Confidence 9999876454456678889999999888753
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.1 Score=42.91 Aligned_cols=99 Identities=22% Similarity=0.180 Sum_probs=61.9
Q ss_pred cCCCCCEEEEEcCCc--cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC---CC
Q 028002 65 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~ 139 (215)
.++++.+||-.|+.. |..+..+++.+|. .++++-.+++..+.+++ .+.+ .-+.+...|+.+. ..
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~~~~~----lGAd-----~vi~y~~~~~~~~v~~~t 207 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLELLKE----LGAD-----HVINYREEDFVEQVRELT 207 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHHHHHHHh----cCCC-----EEEcCCcccHHHHHHHHc
Confidence 478899999999543 7889999999853 56666666655554443 3321 1222223332221 11
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEeC
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
....+|+|+..-.-+. .....+.|+++|.++..-.
T Consensus 208 ~g~gvDvv~D~vG~~~-~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 208 GGKGVDVVLDTVGGDT-FAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCCCceEEEECCCHHH-HHHHHHHhccCCEEEEEec
Confidence 2246999997766544 4457889999999988543
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.2 Score=39.03 Aligned_cols=102 Identities=10% Similarity=0.069 Sum_probs=58.1
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhC---CCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028002 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG---PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
..+-..+...+...+.....++..+.|..||+|.+.....+..+ ....+++.+....+...++.++.-.+.. .
T Consensus 197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~----~ 272 (501)
T TIGR00497 197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID----Y 272 (501)
T ss_pred eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC----c
Confidence 33333344444444431122557899999999988776554332 1246999999999999998876443321 1
Q ss_pred CCeEEEeCCCCCC--CCCCCCccEEEEccCC
Q 028002 125 GSLSVHVGDGRKG--WPEFAPYDAIHVGAAA 153 (215)
Q Consensus 125 ~~v~~~~~d~~~~--~~~~~~~D~V~~~~~~ 153 (215)
+......+|.... .....+||.|++++++
T Consensus 273 ~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf 303 (501)
T TIGR00497 273 ANFNIINADTLTTKEWENENGFEVVVSNPPY 303 (501)
T ss_pred cccCcccCCcCCCccccccccCCEEeecCCc
Confidence 1222223333221 1122468888877653
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.51 Score=38.70 Aligned_cols=96 Identities=16% Similarity=0.234 Sum_probs=61.1
Q ss_pred CCCC--CEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe-EEEeCCCCC---C
Q 028002 66 LKPG--MHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRK---G 137 (215)
Q Consensus 66 ~~~~--~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v-~~~~~d~~~---~ 137 (215)
++++ .+||-.|+ | .|..+..+++..|. .++++++.+++..+.+++.+ +. +.+ .....+..+ .
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~-~~Vi~~~~s~~~~~~~~~~l---Ga------~~vi~~~~~~~~~~i~~ 219 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGC-SRVVGICGSDEKCQLLKSEL---GF------DAAINYKTDNVAERLRE 219 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHhc---CC------cEEEECCCCCHHHHHHH
Confidence 4554 89999986 3 48888888888752 27999998888777766533 21 111 111111111 0
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
... ..+|+|+....-. ......+.|+++|.++..
T Consensus 220 ~~~-~gvd~vid~~g~~-~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 220 LCP-EGVDVYFDNVGGE-ISDTVISQMNENSHIILC 253 (345)
T ss_pred HCC-CCceEEEECCCcH-HHHHHHHHhccCCEEEEE
Confidence 112 4699998765543 357789999999999863
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.59 Score=38.34 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=63.0
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-CCCC---CC
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~---~~ 138 (215)
.++++.+||-.|+ | .|..+..+++..| .+++++..++...+.+++.+ +.. .-+..... +... ..
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~l---Ga~-----~vi~~~~~~~~~~~i~~~ 217 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNKL---GFD-----DAFNYKEEPDLDAALKRY 217 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhc---CCc-----eeEEcCCcccHHHHHHHh
Confidence 3678899999997 4 4888888898876 57888888888777776533 211 01111111 1110 11
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.. ..+|+|+....- .....+.+.|+++|.++..
T Consensus 218 ~~-~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 218 FP-NGIDIYFDNVGG-KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CC-CCcEEEEECCCH-HHHHHHHHHhccCcEEEEe
Confidence 12 468999876543 5567889999999999864
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.19 Score=42.23 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=56.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
+.+|+-+|+|. |..+...++.+| .+|+.+|.++...+.+...+.. .+.....+..........+|+|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g~----------~v~~~~~~~~~l~~~l~~aDvV 234 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFGG----------RIHTRYSNAYEIEDAVKRADLL 234 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcCc----------eeEeccCCHHHHHHHHccCCEE
Confidence 46799999996 777777787766 4799999998776655433211 1111111100000011368999
Q ss_pred EEccCC-----CC-chHHHHHhcCCCcEEEEE
Q 028002 148 HVGAAA-----PE-IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 148 ~~~~~~-----~~-~~~~~~~~Lk~gG~lv~~ 173 (215)
+..... +. +.++..+.++++++++-.
T Consensus 235 I~a~~~~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 235 IGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred EEccccCCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 876422 22 336777889999887753
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.23 Score=41.32 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 111 (215)
++++.+.. ..+-..|+|+|+|.|+++..++-..| ..|.+||.|....+.|++
T Consensus 143 elvSsi~~-f~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 143 ELVSSISD-FTGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHh-hcCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHH
Confidence 33444442 23347899999999999999986554 799999999766555543
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.55 Score=37.05 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh---C-CCCeEEEEecCh--------------------------HHHHHHHHHHHhhc
Q 028002 68 PGMHALDIGSGTGYLTACFALMV---G-PQGRAVGVEHIP--------------------------ELVVSSIQNIEKSA 117 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~---~-~~~~v~~~D~s~--------------------------~~~~~a~~~~~~~~ 117 (215)
-...|+|+||-.|..+..++..+ + .+.+++++|.=+ ...+..++++...+
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 34689999999998776654433 2 346799988321 12233333333322
Q ss_pred ccCcccCCCeEEEeCCCCCCCCC--CCCccEEEEccCCC----CchHHHHHhcCCCcEEEEE
Q 028002 118 AAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAP----EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 118 ~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~V~~~~~~~----~~~~~~~~~Lk~gG~lv~~ 173 (215)
+..+++.++.+.+.+.++. .+.+-++..+..+- ..++.+...|.|||++++-
T Consensus 154 ----l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~D 211 (248)
T PF05711_consen 154 ----LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFD 211 (248)
T ss_dssp ----TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred ----CCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEe
Confidence 2236899999998765553 24566666666552 3446678889999999983
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.2 Score=36.15 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=61.8
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCC
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~ 139 (215)
.+.++.+||-.|+ | .|..+..+++..| .++++++.++...+.+++ .+.. .-++....+... ...
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~----~Ga~-----~vi~~~~~~~~~~v~~~~ 208 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE----LGFD-----AVFNYKTVSLEEALKEAA 208 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCC-----EEEeCCCccHHHHHHHHC
Confidence 3678899999984 3 4888888898876 579999988887777654 2221 001111111111 011
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
. ..+|+|+....- .......+.|+++|.++..
T Consensus 209 ~-~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 209 P-DGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred C-CCcEEEEECCCH-HHHHHHHHhhccCCEEEEE
Confidence 2 468999865544 5567789999999998763
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.7 Score=36.37 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=63.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCC---CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCC
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFA 142 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~ 142 (215)
.+..++|+|+|+..-+..+.+.+.+ -..++.+|++...+....+.+..... .-.+.-+.+|....+. +..
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-----~l~v~~l~~~~~~~La~~~~~ 152 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-----GLEVNALCGDYELALAELPRG 152 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-----CCeEeehhhhHHHHHhcccCC
Confidence 3679999999999888888776633 26899999999988866555543211 1233344555543221 112
Q ss_pred CccE-EEEccCC--------CCchHHHHHhcCCCcEEEEEe
Q 028002 143 PYDA-IHVGAAA--------PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 143 ~~D~-V~~~~~~--------~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+--+ ++....+ ..++..+...|+||-.+++-+
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 2222 2333332 234567889999999998843
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.14 Score=42.02 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=62.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
.+.++.+||..|+|. |..+..+++..| .+++++..++...+.+++ + +.. .-+.....+... ....
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~-~---g~~-----~v~~~~~~~~~~~l~~~~~ 224 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFARE-L---GAD-----DTINVGDEDVAARLRELTD 224 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHH-h---CCC-----EEecCcccCHHHHHHHHhC
Confidence 467888999998875 778888888865 678888888877766643 2 111 011111111111 1112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+|+++....-......+.+.|+++|.++..
T Consensus 225 ~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 225 GEGADVVIDATGNPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 246999998754445667789999999998864
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.11 Score=35.17 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEec
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEH 101 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~ 101 (215)
+....+|+|||+|.+.-.+.+. | -.-.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-G--y~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-G--YPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-C--CCcccccc
Confidence 3567999999999998888776 3 45577885
|
; GO: 0008168 methyltransferase activity |
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.89 Score=37.30 Aligned_cols=98 Identities=19% Similarity=0.212 Sum_probs=59.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC--CCCCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--KGWPEFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~--~~~~~~~ 142 (215)
..++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+.. .-+.....+.. ......+
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~~~~~~~~~ 230 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGA-SLVIASDPNPYRLELAKK----MGAD-----VVINPREEDVVEVKSVTDGT 230 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH----hCcc-----eeeCcccccHHHHHHHcCCC
Confidence 46778888888765 7777888888652 268888777766655543 1111 00111111110 0011225
Q ss_pred CccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 143 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+|+|+....-......+.+.|+++|.++..
T Consensus 231 ~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 231 GVDVVLEMSGNPKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 7999998765555667788999999998864
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.049 Score=46.74 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=51.2
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCccEEE
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAIH 148 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~V~ 148 (215)
..|+|..+|.|+++.++.+. .|+....-+..-.-.-..+...|+ +-+ --|+.+.++. ..+||+|+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydRGL--------IG~-yhDWCE~fsTYPRTYDLlH 432 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDRGL--------IGV-YHDWCEAFSTYPRTYDLLH 432 (506)
T ss_pred eeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhccc--------chh-ccchhhccCCCCcchhhee
Confidence 47999999999999888653 255554433310000001111111 111 1133222221 26899999
Q ss_pred EccCCCC---------chHHHHHhcCCCcEEEE
Q 028002 149 VGAAAPE---------IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 149 ~~~~~~~---------~~~~~~~~Lk~gG~lv~ 172 (215)
++..+.. ++-++-+.|+|||.+++
T Consensus 433 A~~lfs~~~~rC~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 433 ADGLFSLYKDRCEMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred hhhhhhhhcccccHHHHHHHhHhhcCCCceEEE
Confidence 8876533 33467899999999998
|
; GO: 0008168 methyltransferase activity |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.11 Score=44.35 Aligned_cols=101 Identities=24% Similarity=0.277 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-------C
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------P 139 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------~ 139 (215)
..+..+|-+|-|.|.+...+...+ +...++++++++.+++.+++++.-.- ..+..+...|...+. .
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q------~~r~~V~i~dGl~~~~~~~k~~~ 366 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQ------SDRNKVHIADGLDFLQRTAKSQQ 366 (482)
T ss_pred cccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhh------hhhhhhhHhhchHHHHHHhhccc
Confidence 345678999999999998887776 44899999999999999998874321 123445555544321 2
Q ss_pred CCCCccEEEEccCCCC---------------chHHHHHhcCCCcEEEEEe
Q 028002 140 EFAPYDAIHVGAAAPE---------------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~---------------~~~~~~~~Lk~gG~lv~~~ 174 (215)
....||++..+-.-.. ++......|.|.|.+++..
T Consensus 367 ~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 367 EDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred cccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 3357999976643211 2234667899999999854
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.34 Score=36.99 Aligned_cols=33 Identities=33% Similarity=0.382 Sum_probs=24.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecC
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHI 102 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s 102 (215)
+.+|+-+|||. |......+.+.|. ++++.+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCC
Confidence 57899999996 6655544444455 689999977
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.36 Score=38.56 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=57.6
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC--CCccE
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--APYDA 146 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~D~ 146 (215)
+..|+-+| -.-..+++++-. +--.++..+|+++..+....+...+.+. ++++.+.-|..+.++.. +.||+
T Consensus 153 gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g~------~~ie~~~~Dlr~plpe~~~~kFDv 224 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELGY------NNIEAFVFDLRNPLPEDLKRKFDV 224 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhCc------cchhheeehhcccChHHHHhhCCe
Confidence 56799998 333444444433 3237899999999999999988888654 68999999998877742 68999
Q ss_pred EEEccCC
Q 028002 147 IHVGAAA 153 (215)
Q Consensus 147 V~~~~~~ 153 (215)
.+.+++-
T Consensus 225 fiTDPpe 231 (354)
T COG1568 225 FITDPPE 231 (354)
T ss_pred eecCchh
Confidence 9887753
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.3 Score=42.18 Aligned_cols=88 Identities=16% Similarity=0.037 Sum_probs=58.0
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
-.+.+|+-+|+|. |......++.+| .+|+.+|.++.....+.. .+ +.+. +..+.. ...|
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~G--a~ViV~e~dp~~a~~A~~----~G---------~~~~--~leell---~~AD 311 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFG--ARVVVTEIDPICALQAAM----EG---------YQVV--TLEDVV---ETAD 311 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhHHHHHh----cC---------ceec--cHHHHH---hcCC
Confidence 3578999999997 666666666655 589999988765433321 11 1111 111111 3589
Q ss_pred EEEEccCCCCch-HHHHHhcCCCcEEEEEe
Q 028002 146 AIHVGAAAPEIP-QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~~-~~~~~~Lk~gG~lv~~~ 174 (215)
+|+......+++ .+....+|||++|+-..
T Consensus 312 IVI~atGt~~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 312 IFVTATGNKDIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred EEEECCCcccccCHHHHhccCCCcEEEEcC
Confidence 998877666666 58889999999987653
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.97 Score=37.04 Aligned_cols=94 Identities=22% Similarity=0.339 Sum_probs=60.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe-EEEeCCCCCCCCCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVGDGRKGWPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~ 143 (215)
..++.+|+-.|+|. |..+..+++..| .++++++.++...+.+++ + +. +.+ .....+.... ....
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~-~---g~------~~vi~~~~~~~~~~--~~~~ 232 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALG--AEVTAFSRSPSKKEDALK-L---GA------DEFIATKDPEAMKK--AAGS 232 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-c---CC------cEEecCcchhhhhh--ccCC
Confidence 56778888888865 777777787765 578999988887776643 2 11 111 0000011011 1256
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+|+...........+.+.|+++|.++..
T Consensus 233 ~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 233 LDLIIDTVSASHDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred ceEEEECCCCcchHHHHHHHhcCCCEEEEE
Confidence 899997666554567889999999998864
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.25 Score=40.43 Aligned_cols=99 Identities=17% Similarity=0.086 Sum_probs=60.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHH-hCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-C
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALM-VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-F 141 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~ 141 (215)
...++.+||-.|+|. |..+..+++. +|. ..+++++.++...+.+++ .+.. .-+.....+....... .
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~-~~v~~~~~~~~~~~~~~~----~Ga~-----~~i~~~~~~~~~~~~~~g 226 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNV-KAVIVADRIDERLALAKE----SGAD-----WVINNAQEPLGEALEEKG 226 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHH----hCCc-----EEecCccccHHHHHhcCC
Confidence 367788999999875 6677777774 353 468889998888777654 2211 0011111111111111 1
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+.............+.|+++|.++..
T Consensus 227 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 227 IKPTLIIDAACHPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 23568877655455667788999999999874
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.26 Score=40.02 Aligned_cols=93 Identities=15% Similarity=0.172 Sum_probs=63.7
Q ss_pred CEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028002 70 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 70 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
.+|.-+|-|. |..+..++-.+| .+|+.+|.|...+......+. .++.....+.......-.++|+|+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~f~----------~rv~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDLFG----------GRVHTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred ccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhhhhHhhC----------ceeEEEEcCHHHHHHHhhhccEEE
Confidence 4788899997 888888887655 799999999998887766543 355555554433222224688886
Q ss_pred EccCC-----CC-chHHHHHhcCCCcEEEEEe
Q 028002 149 VGAAA-----PE-IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 149 ~~~~~-----~~-~~~~~~~~Lk~gG~lv~~~ 174 (215)
..--. +. +.++..+.+|||++++=..
T Consensus 237 gaVLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 237 GAVLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEEEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 54322 22 3367899999999988543
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.15 Score=41.58 Aligned_cols=70 Identities=21% Similarity=0.186 Sum_probs=48.5
Q ss_pred EEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CC-CccEEE
Q 028002 71 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FA-PYDAIH 148 (215)
Q Consensus 71 ~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~-~~D~V~ 148 (215)
+++|+.||.|.++..+... |. .-+.++|+++.+.+.-+.++ . ....+|+.+.... .. .+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~-~~~~a~e~~~~a~~~y~~N~-----------~--~~~~~Di~~~~~~~l~~~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GF-EVVWAVEIDPDACETYKANF-----------P--EVICGDITEIDPSDLPKDVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TE-EEEEEEESSHHHHHHHHHHH-----------T--EEEESHGGGCHHHHHHHT-SEEE
T ss_pred cEEEEccCccHHHHHHHhc-Cc-EEEEEeecCHHHHHhhhhcc-----------c--ccccccccccccccccccceEEE
Confidence 7899999999999999877 43 57899999999888777665 2 6677777654321 01 599999
Q ss_pred EccCCCC
Q 028002 149 VGAAAPE 155 (215)
Q Consensus 149 ~~~~~~~ 155 (215)
..++++.
T Consensus 67 ggpPCQ~ 73 (335)
T PF00145_consen 67 GGPPCQG 73 (335)
T ss_dssp EE---TT
T ss_pred eccCCce
Confidence 8887643
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=93.60 E-value=1 Score=36.98 Aligned_cols=98 Identities=17% Similarity=0.241 Sum_probs=60.2
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 141 (215)
+.++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+.. .-+.....+... .....
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~-----~~v~~~~~~~~~~i~~~~~~ 233 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSP-SKIIMVDLDDNRLEVAKK----LGAT-----HTVNSAKGDAIEQVLELTDG 233 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCC-----ceeccccccHHHHHHHHhCC
Confidence 56788888888865 6677778887653 468889888877665543 2211 111111111100 01122
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+.........+.+.+.|+++|.++..
T Consensus 234 ~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 234 RGVDVVIEAVGIPATFELCQELVAPGGHIANV 265 (345)
T ss_pred CCCCEEEECCCCHHHHHHHHHhccCCcEEEEe
Confidence 46999987655444567778999999998864
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.47 Score=32.36 Aligned_cols=87 Identities=22% Similarity=0.229 Sum_probs=55.7
Q ss_pred CCccHHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCCCCccEEEEcc
Q 028002 77 SGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAPYDAIHVGA 151 (215)
Q Consensus 77 ~G~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~V~~~~ 151 (215)
||.|..+..+++.+.... +++.+|.++..++.+++ ..+.++.+|..+.. ...+.++.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-------------~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-------------EGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-------------TTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-------------cccccccccchhhhHHhhcCccccCEEEEcc
Confidence 455667777766654334 89999999998777654 34678899987631 1225788887776
Q ss_pred CCCCch---HHHHHhcCCCcEEEEEeCC
Q 028002 152 AAPEIP---QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 152 ~~~~~~---~~~~~~Lk~gG~lv~~~~~ 176 (215)
.-...- -...+.+.|...+++-..+
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 543221 2345667788888876654
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.19 Score=41.21 Aligned_cols=69 Identities=20% Similarity=0.167 Sum_probs=47.2
Q ss_pred EEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccEEEEc
Q 028002 72 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAIHVG 150 (215)
Q Consensus 72 vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~V~~~ 150 (215)
|+|+.||.|.++..+... |- ..+.++|+++.+++.-+.++.. .+..+|+.+... ....+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~-~~~~a~e~~~~a~~ty~~N~~~------------~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GF-KCVFASEIDKYAQKTYEANFGN------------KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHc-CC-eEEEEEeCCHHHHHHHHHhCCC------------CCCccChhhhhhhhCCCcCEEEec
Confidence 589999999999998776 43 4577899999988877766422 233445544322 12358999887
Q ss_pred cCCC
Q 028002 151 AAAP 154 (215)
Q Consensus 151 ~~~~ 154 (215)
.+++
T Consensus 67 ~PCq 70 (315)
T TIGR00675 67 FPCQ 70 (315)
T ss_pred CCCc
Confidence 7653
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.34 Score=39.75 Aligned_cols=101 Identities=22% Similarity=0.300 Sum_probs=60.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
...++.+||..|+|. |..+..+++..|. ..+++++.++...+.+++ .+....+...... ....... .....
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~-~~v~~~~~~~~~~~~l~~----~g~~~~~~~~~~~--~~~~~~~-~~~~~ 227 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGA-KRVIAVDIDDEKLAVARE----LGADDTINPKEED--VEKVREL-TEGRG 227 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----cCCCEEecCcccc--HHHHHHH-hCCCC
Confidence 367788999998776 7777788887652 238999888776665532 2211000000000 0000111 12235
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+++...........+.+.|+++|.++..
T Consensus 228 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 228 ADLVIEAAGSPATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 999997654445667889999999998764
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.48 E-value=1.3 Score=36.39 Aligned_cols=98 Identities=17% Similarity=0.158 Sum_probs=58.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 141 (215)
..++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++. +.. .-+.....+..+ .....
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~-~~v~~~~~~~~~~~~~~~~----g~~-----~~v~~~~~~~~~~l~~~~~~ 228 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGA-YPVIVSDPNEYRLELAKKM----GAT-----YVVNPFKEDVVKEVADLTDG 228 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHh----CCc-----EEEcccccCHHHHHHHhcCC
Confidence 45678888877764 6777777887652 2388888777666655431 211 001111111111 11122
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+...........+.+.|+++|.++..
T Consensus 229 ~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 229 EGVDVFLEMSGAPKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCCEEEECCCCHHHHHHHHHhhcCCCEEEEE
Confidence 46999987655445677889999999998764
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.69 Score=41.69 Aligned_cols=99 Identities=23% Similarity=0.198 Sum_probs=60.2
Q ss_pred EEEEEcCCccHHHHHHHHH---hCCCCeEEEEecChHHHHHHHHHH---HhhcccCcccCCCeEEEeCCCCCCCCC----
Q 028002 71 HALDIGSGTGYLTACFALM---VGPQGRAVGVEHIPELVVSSIQNI---EKSAAAPLLKEGSLSVHVGDGRKGWPE---- 140 (215)
Q Consensus 71 ~vLdiG~G~G~~~~~l~~~---~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~~~~~~~~~v~~~~~d~~~~~~~---- 140 (215)
.|+.+|+|-|-+.....+. .+-+.+++++|.++..+.....+. ..|........+.++++..|.......
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999776655443 344468999999976544443332 223210001125699999998764322
Q ss_pred -------CCCccEEEEc----cCC----CCchHHHHHhcCC----CcE
Q 028002 141 -------FAPYDAIHVG----AAA----PEIPQALIDQLKP----GGR 169 (215)
Q Consensus 141 -------~~~~D~V~~~----~~~----~~~~~~~~~~Lk~----gG~ 169 (215)
.+++|+|++- ... ++.++.+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 1369999652 222 3444566777876 776
|
|
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.43 E-value=1 Score=37.02 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------CCC
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------GWP 139 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------~~~ 139 (215)
.++.+||-.|+|. |..+..+++..|. .++++++.++...+.+.+ + +.. .+....... ...
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~---g~~--------~~~~~~~~~~~~~~~~~~ 240 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGP-ANIIVVDIDEAKLEAAKA-A---GAD--------VVVNGSDPDAAKRIIKAA 240 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-h---CCc--------EEecCCCccHHHHHHHHh
Confidence 4678898888875 7788888888753 478899888877766643 2 211 111111000 011
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
. +.+|+++...........+.+.|+++|.++..
T Consensus 241 ~-~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 241 G-GGVDAVIDFVNNSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred C-CCCcEEEECCCCHHHHHHHHHHhhcCCeEEEE
Confidence 2 26899997665555678889999999998863
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=93.38 E-value=1 Score=37.45 Aligned_cols=99 Identities=20% Similarity=0.265 Sum_probs=60.1
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 141 (215)
+.++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ + +.. .-+.....+... .....
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G~-~~vi~~~~s~~~~~~~~~-~---g~~-----~v~~~~~~~~~~~l~~~~~~ 254 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFGA-SPIIAVDVRDEKLAKAKE-L---GAT-----HTVNAAKEDAVAAIREITGG 254 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-h---CCc-----eEecCCcccHHHHHHHHhCC
Confidence 46778888888764 7777788887653 348999888877766643 2 111 000100111100 01122
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
..+|+|+....-......+.+.|+++|.++...
T Consensus 255 ~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 255 RGVDVVVEALGKPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 569999876544336677889999999988753
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu |
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.31 Score=40.59 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=62.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC--CCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~ 143 (215)
..++.+|+|.+|..|.-+..++..+.+.+++.++|.+....+..++.+.-.+. ..++...+|+.....+ ...
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~------~~~~~~~~df~~t~~~~~~~~ 284 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV------SIVESVEGDFLNTATPEKFRD 284 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC------CccccccccccCCCCcccccc
Confidence 67789999999999999999988876679999999999999998888877665 4666667787764211 123
Q ss_pred ccEEEEccCC
Q 028002 144 YDAIHVGAAA 153 (215)
Q Consensus 144 ~D~V~~~~~~ 153 (215)
...|++++++
T Consensus 285 v~~iL~Dpsc 294 (413)
T KOG2360|consen 285 VTYILVDPSC 294 (413)
T ss_pred eeEEEeCCCC
Confidence 4455666544
|
|
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.3 Score=40.63 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=62.2
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC--CCCC---CC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~--d~~~---~~ 138 (215)
.+.++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ + +.. .-+..... +... ..
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~---g~~-----~~v~~~~~~~~~~~~l~~~ 249 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGA-SRIIAVDINKDKFEKAKQ-L---GAT-----ECINPRDQDKPIVEVLTEM 249 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-h---CCC-----eecccccccchHHHHHHHH
Confidence 367788999998876 7777788888753 358889988887777643 2 211 01111111 1100 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcC-CCcEEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLK-PGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk-~gG~lv~~ 173 (215)
.. +.+|+|+.............+.|+ ++|.++..
T Consensus 250 ~~-~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 250 TD-GGVDYAFEVIGSADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred hC-CCCcEEEECCCCHHHHHHHHHHhccCCCEEEEE
Confidence 12 469999876544456677888999 99998865
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >PLN02702 L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=93.09 E-value=1.9 Score=35.81 Aligned_cols=99 Identities=20% Similarity=0.204 Sum_probs=61.9
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE--eCCCCCC---C
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH--VGDGRKG---W 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~--~~d~~~~---~ 138 (215)
.+.++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ .+.. ..+.+. ..+.... .
T Consensus 178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~~~~~~~~ 247 (364)
T PLN02702 178 NIGPETNVLVMGAGPIGLVTMLAARAFGA-PRIVIVDVDDERLSVAKQ----LGAD-----EIVLVSTNIEDVESEVEEI 247 (364)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----hCCC-----EEEecCcccccHHHHHHHH
Confidence 366788999998875 7777888888754 458889988877766543 2211 011110 0111110 0
Q ss_pred --CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 --PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 --~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+|+....-........+.|+++|.++..
T Consensus 248 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 248 QKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred hhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 11246899987655445678889999999998754
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.16 Score=40.91 Aligned_cols=51 Identities=20% Similarity=0.100 Sum_probs=36.5
Q ss_pred CCeEEEeCCCCCCC--CCCCCccEEEEccCCC----------------------CchHHHHHhcCCCcEEEEEeC
Q 028002 125 GSLSVHVGDGRKGW--PEFAPYDAIHVGAAAP----------------------EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 125 ~~v~~~~~d~~~~~--~~~~~~D~V~~~~~~~----------------------~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
.+..++++|..+.. ...++||+|++++++. .++.++.++|||||.+++.+.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 45577888876532 2337899999988752 234678899999999998644
|
|
| >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=92.88 E-value=1.3 Score=37.15 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=60.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC---CCCC---C
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRK---G 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~---d~~~---~ 137 (215)
.+.++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+.. .-+..... +... .
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~-~~vi~~~~~~~~~~~~~~----~g~~-----~~v~~~~~~~~~~~~~v~~ 269 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGA-SKVIAFEISEERRNLAKE----MGAD-----YVFNPTKMRDCLSGEKVME 269 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----cCCC-----EEEcccccccccHHHHHHH
Confidence 366788998888876 7777778887652 379999988876555543 2211 00111100 1100 1
Q ss_pred CCCCCCccEEEEccCC-CCchHHHHHhcCCCcEEEEE
Q 028002 138 WPEFAPYDAIHVGAAA-PEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~-~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+..... ........+.|+++|.++..
T Consensus 270 ~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 270 VTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred hcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEE
Confidence 1122469999876543 23567788999999999864
|
This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.45 Score=39.23 Aligned_cols=74 Identities=22% Similarity=0.189 Sum_probs=52.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC--C-Ccc
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--A-PYD 145 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~-~~D 145 (215)
..+++|+.||.|.+...+... |. .-+.++|+++.+++.-+.++.. -.++..|........ . .+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-gf-~~~~a~Eid~~a~~ty~~n~~~-----------~~~~~~di~~~~~~~~~~~~~D 69 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-GF-EIVFANEIDPPAVATYKANFPH-----------GDIILGDIKELDGEALRKSDVD 69 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-CC-eEEEEEecCHHHHHHHHHhCCC-----------CceeechHhhcChhhccccCCC
Confidence 468999999999999888776 44 5788999999988876665431 344555554322211 1 789
Q ss_pred EEEEccCCCC
Q 028002 146 AIHVGAAAPE 155 (215)
Q Consensus 146 ~V~~~~~~~~ 155 (215)
+++..++++.
T Consensus 70 vligGpPCQ~ 79 (328)
T COG0270 70 VLIGGPPCQD 79 (328)
T ss_pred EEEeCCCCcc
Confidence 9999988754
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.67 Score=38.54 Aligned_cols=100 Identities=17% Similarity=0.080 Sum_probs=62.3
Q ss_pred CCCCCEEEEEcCCc--cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC--C
Q 028002 66 LKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--F 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~ 141 (215)
.+++.+||-+|.++ |..+..+++..+ ...+..-.+.+..+.+++ .+.+. -+++...+..+.... .
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l~k~----lGAd~-----vvdy~~~~~~e~~kk~~~ 223 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLELVKK----LGADE-----VVDYKDENVVELIKKYTG 223 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHHHHH----cCCcE-----eecCCCHHHHHHHHhhcC
Confidence 67788999998886 577778888874 245555667777777654 33321 122222222221111 3
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEEeCC
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
..||+|+....-..........++.||..++.+..
T Consensus 224 ~~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~~ 258 (347)
T KOG1198|consen 224 KGVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLVG 258 (347)
T ss_pred CCccEEEECCCCCccccchhhhccCCceEEEEecc
Confidence 67999998877766666667777777766665543
|
|
| >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2 | Back alignment and domain information |
|---|
Probab=92.71 E-value=1.8 Score=35.44 Aligned_cols=97 Identities=20% Similarity=0.287 Sum_probs=59.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 141 (215)
..++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+. ..+.....+... .....
T Consensus 165 ~~~~~~vlI~g~g~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~----~g~------~~~~~~~~~~~~~l~~~~~~ 233 (344)
T cd08284 165 VRPGDTVAVIGCGPVGLCAVLSAQVLGA-ARVFAVDPVPERLERAAA----LGA------EPINFEDAEPVERVREATEG 233 (344)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCC-ceEEEEcCCHHHHHHHHH----hCC------eEEecCCcCHHHHHHHHhCC
Confidence 56788998888765 6677777777642 368888877766655543 221 001110111100 01122
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+.............+.|+++|.++..
T Consensus 234 ~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 234 RGADVVLEAVGGAAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred CCCCEEEECCCCHHHHHHHHHhcccCCEEEEE
Confidence 46999987665555677889999999998764
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical |
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.34 Score=39.63 Aligned_cols=97 Identities=22% Similarity=0.209 Sum_probs=60.2
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC---CCCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR---KGWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~---~~~~~~ 141 (215)
..++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+.. .+-....+.. ......
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~----~g~~------~~~~~~~~~~~~i~~~~~~ 233 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTP-ATVIAVDRSEEALKLAER----LGAD------HVLNASDDVVEEVRELTGG 233 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHHH----hCCc------EEEcCCccHHHHHHHHhCC
Confidence 56688999999775 6666777777643 578888888876665532 2211 1100000100 011122
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+.........+.+.+.|+++|.++..
T Consensus 234 ~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 234 RGADAVIDFVGSDETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEE
Confidence 46999997665545677888999999999864
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=92.61 E-value=2 Score=35.41 Aligned_cols=95 Identities=15% Similarity=0.056 Sum_probs=59.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC---C---CC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR---K---GW 138 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~---~---~~ 138 (215)
+.++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++ .+. .. ++..... . ..
T Consensus 172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~----~g~------~~--v~~~~~~~~~~~~~~~ 238 (350)
T cd08256 172 IKFDDVVVLAGAGPLGLGMIGAARLKNP-KKLIVLDLKDERLALARK----FGA------DV--VLNPPEVDVVEKIKEL 238 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCHHHHHHHHH----cCC------cE--EecCCCcCHHHHHHHH
Confidence 66788888888765 7777888888764 468889988876665543 221 11 1111100 0 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+++....-......+.+.++++|.++..
T Consensus 239 ~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~ 273 (350)
T cd08256 239 TGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEF 273 (350)
T ss_pred hCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 12135899987655444567789999999998764
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.023 Score=41.17 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=34.8
Q ss_pred CCCCCccEEEEccCCCCch--------HHHHHhcCCCcEEEEEeCCCceeEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPVGNIFQDLKVV 184 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~~~~~~~~~~~ 184 (215)
..+++.|+|++...++|+- +.+++.|||||+|-+++|+.......+
T Consensus 43 F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y 96 (185)
T COG4627 43 FEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLY 96 (185)
T ss_pred CCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHH
Confidence 3447899998887776643 678999999999999999865433333
|
|
| >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.23 E-value=2.4 Score=35.22 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=61.0
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC---CCCC---C
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRK---G 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~---d~~~---~ 137 (215)
.+.++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ + +.. .++.. +... .
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G~-~~Vi~~~~~~~~~~~~~~-~---g~~--------~vv~~~~~~~~~~l~~ 245 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGA-SRIIAVDPVPEKLELARR-F---GAT--------HTVNASEDDAVEAVRD 245 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHH-h---CCe--------EEeCCCCccHHHHHHH
Confidence 356788998888864 7777888887652 358899888877666532 2 111 11111 1100 1
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+++....-........+.|+++|.++..
T Consensus 246 ~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 246 LTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred HcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEE
Confidence 112256999987655455667889999999998864
|
Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me |
| >PRK05396 tdh L-threonine 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.15 E-value=2 Score=35.18 Aligned_cols=99 Identities=21% Similarity=0.207 Sum_probs=60.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 141 (215)
..++.+|+-.|+|. |..+..+++..|. .++++++.++...+.+++ .+.. .-+.....+... .....
T Consensus 161 ~~~g~~vlV~~~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~----lg~~-----~~~~~~~~~~~~~~~~~~~~ 230 (341)
T PRK05396 161 DLVGEDVLITGAGPIGIMAAAVAKHVGA-RHVVITDVNEYRLELARK----MGAT-----RAVNVAKEDLRDVMAELGMT 230 (341)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----hCCc-----EEecCccccHHHHHHHhcCC
Confidence 34678888888775 7777788887653 368888877776665543 2211 000111111100 11222
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
..+|+|+.............+.|+++|.++...
T Consensus 231 ~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 231 EGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEe
Confidence 568999985554556677889999999988864
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.46 Score=38.68 Aligned_cols=94 Identities=21% Similarity=0.217 Sum_probs=65.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-CCCCC----C-
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKG----W- 138 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~~----~- 138 (215)
+++++++.-+|.|. |.....-++..|. ++++++|++++-.+.|++. +.. +++.. |.... .
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GA-srIIgvDiN~~Kf~~ak~f----GaT--------e~iNp~d~~~~i~evi~ 256 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGA-SRIIGVDINPDKFEKAKEF----GAT--------EFINPKDLKKPIQEVII 256 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCc-ccEEEEecCHHHHHHHHhc----Ccc--------eecChhhccccHHHHHH
Confidence 78999999999998 6555566777555 8999999999999998752 221 22221 22210 0
Q ss_pred -CCCCCccEEEEccCCCCchHHHHHhcCCC-cEEEE
Q 028002 139 -PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 172 (215)
Q Consensus 139 -~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~ 172 (215)
..++.+|.-+-.....+.+.++....+.| |.-++
T Consensus 257 EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~ 292 (375)
T KOG0022|consen 257 EMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVV 292 (375)
T ss_pred HHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEE
Confidence 12367888887777777778888888888 76665
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.97 Score=35.10 Aligned_cols=94 Identities=14% Similarity=0.137 Sum_probs=60.1
Q ss_pred CCCCEEEEEcCCccHHH--HHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 67 KPGMHALDIGSGTGYLT--ACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~--~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.++.+||-+|.|.-..- ..+++. |..-.|++-+++++..+.++. .+++++..+...... ..+
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~-gA~VtVVap~i~~el~~l~~~-------------~~i~~~~r~~~~~dl--~g~ 86 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKK-GCYVYILSKKFSKEFLDLKKY-------------GNLKLIKGNYDKEFI--KDK 86 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCCCHHHHHHHhC-------------CCEEEEeCCCChHHh--CCC
Confidence 34679999999974332 223333 433344444777766554321 578888776654322 468
Q ss_pred cEEEEccCCCCchHHHHHhcCCCcEEEEEeCC
Q 028002 145 DAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
++|++...-+.+-+.+....+..|.++....+
T Consensus 87 ~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 87 HLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred cEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 89998888877888888888877777665543
|
|
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=92.06 E-value=2.8 Score=34.33 Aligned_cols=99 Identities=17% Similarity=0.213 Sum_probs=60.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
...++.+|+-.|+|. |..+..+++..|. ..+++++.++...+.+++ .+.. .-+.....+... ....
T Consensus 165 ~~~~g~~vlI~g~g~vg~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~ga~-----~v~~~~~~~~~~~i~~~~~ 234 (345)
T cd08287 165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGA-ERIIAMSRHEDRQALARE----FGAT-----DIVAERGEEAVARVRELTG 234 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCCc-----eEecCCcccHHHHHHHhcC
Confidence 356778888888876 7788888888753 358999988766555543 2211 001110001000 0112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+|+++....-......+.+.++++|.++..
T Consensus 235 ~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 235 GVGADAVLECVGTQESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhhccCCEEEEe
Confidence 246899987654445677889999999998864
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.96 Score=39.17 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=34.7
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~ 113 (215)
..+++|+.||.|+++..+-.. |. .-+.++|+++.+.+.-+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~-~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GG-QCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CC-EEEEEEechHHHHHHHHHHc
Confidence 468999999999999999766 43 46788999998777666654
|
|
| >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase | Back alignment and domain information |
|---|
Probab=91.73 E-value=2.5 Score=34.56 Aligned_cols=94 Identities=22% Similarity=0.309 Sum_probs=60.2
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCe-EEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------C
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 137 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------~ 137 (215)
+.++.+||-.|+|. |..+..+++..| .+ ++++..++...+.+++ + +.. .+...+-.. .
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g--~~~v~~~~~s~~~~~~~~~-~---g~~--------~~~~~~~~~~~~~i~~ 228 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASG--ARKVIVSDLNEFRLEFAKK-L---GAD--------YTIDAAEEDLVEKVRE 228 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH-h---CCc--------EEecCCccCHHHHHHH
Confidence 67788998888764 777777888765 45 8888888887766542 2 211 111111000 0
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+...........+.+.|+++|.++..
T Consensus 229 ~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 229 LTDGRGADVVIVATGSPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred HhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 112245899987655455667788999999998874
|
Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i |
| >cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=91.73 E-value=2.7 Score=34.31 Aligned_cols=99 Identities=25% Similarity=0.285 Sum_probs=59.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC------CC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR------KG 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~------~~ 137 (215)
.+.++.+||-.|+|. |..+..+++..|. ..+++++.++...+.+++. +.. .-+.....+.. ..
T Consensus 158 ~~~~g~~VlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~~----g~~-----~~i~~~~~~~~~~~~~~~~ 227 (341)
T cd08262 158 RLTPGEVALVIGCGPIGLAVIAALKARGV-GPIVASDFSPERRALALAM----GAD-----IVVDPAADSPFAAWAAELA 227 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHc----CCc-----EEEcCCCcCHHHHHHHHHH
Confidence 367788999888764 6677777877653 4588888888877766542 110 00010000000 00
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+....-........+.++++|.++..
T Consensus 228 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~ 263 (341)
T cd08262 228 RAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVV 263 (341)
T ss_pred HhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 112246999986544333567778899999998864
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.36 Score=39.18 Aligned_cols=158 Identities=18% Similarity=0.173 Sum_probs=82.7
Q ss_pred HHHHHHhCcCcCCCCCCCCCCcCCCccccCCc------ccchhHHHHHHHHHHHhcC--C---------CCCEEEEEcCC
Q 028002 16 VSEVMETIDRACFVPDGTPPYVDSPMAIGYNA------TISAPHMHATCLQLLEENL--K---------PGMHALDIGSG 78 (215)
Q Consensus 16 ~~~~~~~~~r~~~~~~~~~~y~~~~~~~~~~~------~~~~~~~~~~~l~~l~~~~--~---------~~~~vLdiG~G 78 (215)
+.+.+++|....|......+|.+...-..+.. .+.+..+...+.+.+.... . +..+||.||-|
T Consensus 17 l~~~iQ~VK~~LYnRDf~~AF~~~~~L~AYA~RWSPsRAL~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGG 96 (315)
T PF11312_consen 17 LQELIQEVKGHLYNRDFAAAFGDEEKLEAYAARWSPSRALAYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGG 96 (315)
T ss_pred HHHHHHHHHHHHhcchHHHHhCChhhhhhheeccCHHHHHHHHHHHHHHHHHHHhhccccccccccccccCceEEEECCC
Confidence 66667777665555444445555443333322 1222222333333222111 1 12599999999
Q ss_pred ccHHHHHHHHHh-C------------------CCCeEEEEecCh--HHHHHHHHHHHhhccc---------Ccc--cCCC
Q 028002 79 TGYLTACFALMV-G------------------PQGRAVGVEHIP--ELVVSSIQNIEKSAAA---------PLL--KEGS 126 (215)
Q Consensus 79 ~G~~~~~l~~~~-~------------------~~~~v~~~D~s~--~~~~~a~~~~~~~~~~---------~~~--~~~~ 126 (215)
-|.-..+++..+ . +...++.+|+.+ ..++.....+...... ... +.-+
T Consensus 97 AGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~~~~~~~~~~ 176 (315)
T PF11312_consen 97 AGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANWPLIEPDRFN 176 (315)
T ss_pred hHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccccccCCcccee
Confidence 998888777766 0 113899999876 4455544444433000 001 1135
Q ss_pred eEEEeCCCCCCCCCC-------CCccEEEEccCCC-----------CchHHHHHhcCCCcEEEEE
Q 028002 127 LSVHVGDGRKGWPEF-------APYDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 127 v~~~~~d~~~~~~~~-------~~~D~V~~~~~~~-----------~~~~~~~~~Lk~gG~lv~~ 173 (215)
+.|.+.|+.....+. ...++|..-..+. .++..+-..++||-.|++.
T Consensus 177 ~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 177 VSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred eeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 677888876543311 1244442222222 2334677889999988874
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.73 Score=38.81 Aligned_cols=75 Identities=20% Similarity=0.147 Sum_probs=48.8
Q ss_pred CEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC---CCCCcc
Q 028002 70 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFAPYD 145 (215)
Q Consensus 70 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~D 145 (215)
++||-||||. |......+.+-+. .+|+..|.+...++.+..... .+++..+.|+.+... -...+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~----------~~v~~~~vD~~d~~al~~li~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIG----------GKVEALQVDAADVDALVALIKDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhcc----------ccceeEEecccChHHHHHHHhcCC
Confidence 5799999976 6655555433233 799999999888777654322 367777777765311 113569
Q ss_pred EEEEccCCCC
Q 028002 146 AIHVGAAAPE 155 (215)
Q Consensus 146 ~V~~~~~~~~ 155 (215)
+|+...+...
T Consensus 71 ~VIn~~p~~~ 80 (389)
T COG1748 71 LVINAAPPFV 80 (389)
T ss_pred EEEEeCCchh
Confidence 8887766543
|
|
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=91.48 E-value=3.4 Score=33.10 Aligned_cols=95 Identities=20% Similarity=0.187 Sum_probs=59.0
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCe-EEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC---CCC---
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD---GRK--- 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d---~~~--- 136 (215)
.+.++.+||-.|+|. |..+..+++..| .+ ++++..++...+.+++ .+.. .+.... ...
T Consensus 126 ~~~~~~~vlI~g~g~vg~~~~~la~~~g--~~~v~~~~~~~~~~~~~~~----~g~~--------~~~~~~~~~~~~~l~ 191 (312)
T cd08269 126 WIRAGKTVAVIGAGFIGLLFLQLAAAAG--ARRVIAIDRRPARLALARE----LGAT--------EVVTDDSEAIVERVR 191 (312)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCCc--------eEecCCCcCHHHHHH
Confidence 356788888888754 667777777765 45 8888887776664432 2211 111111 100
Q ss_pred CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 137 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.......+|+++.............+.|+++|.++..
T Consensus 192 ~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~ 228 (312)
T cd08269 192 ELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIF 228 (312)
T ss_pred HHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 0112246999997755545667788999999998864
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.46 E-value=2.9 Score=34.06 Aligned_cols=97 Identities=23% Similarity=0.256 Sum_probs=60.2
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe-EEEe-CCCCCCC-C
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHV-GDGRKGW-P 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v-~~~~-~d~~~~~-~ 139 (215)
.++++.+||-.|+|. |..+..+++.. | .++++++.+++..+.+++ + +.. .+ .... .+..... .
T Consensus 159 ~~~~g~~vlV~g~g~vG~~~~~la~~~~g--~~v~~~~~~~~~~~~~~~-~---g~~------~v~~~~~~~~~~~~v~~ 226 (338)
T PRK09422 159 GIKPGQWIAIYGAGGLGNLALQYAKNVFN--AKVIAVDINDDKLALAKE-V---GAD------LTINSKRVEDVAKIIQE 226 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCC--CeEEEEeCChHHHHHHHH-c---CCc------EEecccccccHHHHHHH
Confidence 367889999999765 77777788863 4 579999999988887743 2 211 11 1000 0100000 0
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+.+|.++.........+.+.+.|+++|.++..
T Consensus 227 ~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 227 KTGGAHAAVVTAVAKAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred hcCCCcEEEEeCCCHHHHHHHHHhccCCCEEEEE
Confidence 0124785554444555678889999999998864
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.18 E-value=2.2 Score=32.37 Aligned_cols=111 Identities=19% Similarity=0.176 Sum_probs=68.8
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHh---CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCC
Q 028002 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 126 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~ 126 (215)
.+|..+-.+.+.+- ..+ ...|+|+|+-.|..++..|... |...+|.++|++-.-++-+... .+.
T Consensus 53 k~p~D~~~yQellw-~~~-P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------~p~ 119 (237)
T COG3510 53 KSPSDMWNYQELLW-ELQ-PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------VPD 119 (237)
T ss_pred CCHHHHHHHHHHHH-hcC-CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------CCC
Confidence 45555555555554 244 4789999999998777766533 4347999999987665544321 168
Q ss_pred eEEEeCCCCCCCC------CCCCccEEEEccCCCC----ch---HHHHHhcCCCcEEEEE
Q 028002 127 LSVHVGDGRKGWP------EFAPYDAIHVGAAAPE----IP---QALIDQLKPGGRMVIP 173 (215)
Q Consensus 127 v~~~~~d~~~~~~------~~~~~D~V~~~~~~~~----~~---~~~~~~Lk~gG~lv~~ 173 (215)
+.++.++..+..- ..+.|--|+......| ++ +.+..+|..|-++++.
T Consensus 120 i~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 120 ILFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred eEEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEe
Confidence 9999988765211 1133445544443333 22 3456778888888874
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=90.99 E-value=1.1 Score=34.77 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=45.7
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+|+-+|||. |......+.+.|. ++++.+|.+. ...+.+++++++... .-+++
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np-----~~~i~ 94 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGV-GKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINP-----DVEIE 94 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCC-----CCEEE
Confidence 57999999996 6655555555465 6888886443 334555666655321 12344
Q ss_pred EEeCCCCCCC--CCCCCccEEEEccCCCC
Q 028002 129 VHVGDGRKGW--PEFAPYDAIHVGAAAPE 155 (215)
Q Consensus 129 ~~~~d~~~~~--~~~~~~D~V~~~~~~~~ 155 (215)
.....+.... .....+|+|++......
T Consensus 95 ~~~~~i~~~~~~~~~~~~DvVi~~~d~~~ 123 (228)
T cd00757 95 AYNERLDAENAEELIAGYDLVLDCTDNFA 123 (228)
T ss_pred EecceeCHHHHHHHHhCCCEEEEcCCCHH
Confidence 4443332110 01146999987765443
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH) | Back alignment and domain information |
|---|
Probab=90.93 E-value=4.6 Score=33.68 Aligned_cols=96 Identities=25% Similarity=0.361 Sum_probs=59.3
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
...++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++ .+. ..+.....+... ....
T Consensus 173 ~~~~g~~vlI~g~g~vg~~~~~~a~~~G~-~~vi~~~~~~~~~~~~~~----~g~------~~v~~~~~~~~~~i~~~~~ 241 (375)
T cd08282 173 GVQPGDTVAVFGAGPVGLMAAYSAILRGA-SRVYVVDHVPERLDLAES----IGA------IPIDFSDGDPVEQILGLEP 241 (375)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCC------eEeccCcccHHHHHHHhhC
Confidence 356788888888875 7777788887652 368889988877776653 111 001000001000 0112
Q ss_pred CCCccEEEEccCCCC-----------chHHHHHhcCCCcEEEE
Q 028002 141 FAPYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~-----------~~~~~~~~Lk~gG~lv~ 172 (215)
..+|+|+....... ....+.+.|+++|.++.
T Consensus 242 -~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 242 -GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred -CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 45899987654432 35778899999999864
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.73 E-value=1.4 Score=36.62 Aligned_cols=79 Identities=18% Similarity=0.112 Sum_probs=46.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh---------------------HHHHHHHHHHHhhcccCcccCCC
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP---------------------ELVVSSIQNIEKSAAAPLLKEGS 126 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~---------------------~~~~~a~~~~~~~~~~~~~~~~~ 126 (215)
+.+|+-+|||. |......+.+.|. ++++.+|.+. .-.+.+++.+..... .-.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp-----~v~ 97 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINS-----EVE 97 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCC-----CcE
Confidence 57899999996 6554444444354 6899999874 234455566655321 134
Q ss_pred eEEEeCCCCCCCC--CCCCccEEEEccCC
Q 028002 127 LSVHVGDGRKGWP--EFAPYDAIHVGAAA 153 (215)
Q Consensus 127 v~~~~~d~~~~~~--~~~~~D~V~~~~~~ 153 (215)
++....+...... ....+|+|+....-
T Consensus 98 i~~~~~~~~~~~~~~~~~~~DlVid~~D~ 126 (338)
T PRK12475 98 IVPVVTDVTVEELEELVKEVDLIIDATDN 126 (338)
T ss_pred EEEEeccCCHHHHHHHhcCCCEEEEcCCC
Confidence 5555555432111 12469999877654
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.70 E-value=2.2 Score=33.94 Aligned_cols=72 Identities=25% Similarity=0.285 Sum_probs=55.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.+.+++...|+|+..|+.+-.+.++. -.|+++|.-+-+ + .+ .....++-...|.....+...+.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng~ma-~----sL--------~dtg~v~h~r~DGfk~~P~r~~i 271 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNGPMA-Q----SL--------MDTGQVTHLREDGFKFRPTRSNI 271 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcc---eEEEEeccchhh-h----hh--------hcccceeeeeccCcccccCCCCC
Confidence 46889999999999999999998874 789999964422 1 11 12267888889988877766889
Q ss_pred cEEEEccC
Q 028002 145 DAIHVGAA 152 (215)
Q Consensus 145 D~V~~~~~ 152 (215)
|-.+|+..
T Consensus 272 dWmVCDmV 279 (358)
T COG2933 272 DWMVCDMV 279 (358)
T ss_pred ceEEeehh
Confidence 99888864
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=90.62 E-value=5.5 Score=32.80 Aligned_cols=95 Identities=19% Similarity=0.083 Sum_probs=54.3
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE-eCCCCCCCCCCCCc
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH-VGDGRKGWPEFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~ 144 (215)
+...++.-+|||. |...........+-.++..++.+++..+...+.+... ..+.+. ..+..+.. ...
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~---~~a 193 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK--------FNTEIYVVNSADEAI---EEA 193 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh--------cCCcEEEeCCHHHHH---hcC
Confidence 3457899999996 5544433222223378999999988776655555431 122222 22222212 458
Q ss_pred cEEEEccCCCCchHHHHHhcCCCcEEEEEeC
Q 028002 145 DAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
|+|++..+..+-.-. ..|+|| ..+..++
T Consensus 194 DiVi~aT~s~~p~i~--~~l~~G-~hV~~iG 221 (325)
T PRK08618 194 DIIVTVTNAKTPVFS--EKLKKG-VHINAVG 221 (325)
T ss_pred CEEEEccCCCCcchH--HhcCCC-cEEEecC
Confidence 999877766543222 788885 4455443
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.74 Score=32.84 Aligned_cols=100 Identities=15% Similarity=0.064 Sum_probs=54.6
Q ss_pred EEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeEEE
Q 028002 71 HALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 71 ~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
+|+-+|||. |......+.+.|. ++++.+|.+. ...+.++++++.... .-+++..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p-----~v~i~~~ 74 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNP-----GVNVTAV 74 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCC-----CcEEEEE
Confidence 478899985 6544443334344 6899998662 223444555544321 1233333
Q ss_pred eCCCCCCC--CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEeCC
Q 028002 131 VGDGRKGW--PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 131 ~~d~~~~~--~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
........ .....||+|++..........+.+.++..|.-++....
T Consensus 75 ~~~~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 75 PEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred eeecChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 33332211 11257999998877655445566666666666665544
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.83 Score=37.27 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=50.8
Q ss_pred EEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-C------CCCCcc
Q 028002 73 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-P------EFAPYD 145 (215)
Q Consensus 73 LdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~------~~~~~D 145 (215)
+|||+|...+--.+-... .+-...++|+++..+..|+.++.++... ..+.+++....... . .+..||
T Consensus 107 iDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~snV~qn~ls-----s~ikvV~~~~~ktll~d~~~~~~e~~yd 180 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSNVEQNNLS-----SLIKVVKVEPQKTLLMDALKEESEIIYD 180 (419)
T ss_pred eeccCchhhhHHhhhchh-ccceeeeeeccccccchhhccccccccc-----cceeeEEecchhhcchhhhccCccceee
Confidence 799888765544443332 2368899999999999999999888776 45665554332211 1 124599
Q ss_pred EEEEccCC
Q 028002 146 AIHVGAAA 153 (215)
Q Consensus 146 ~V~~~~~~ 153 (215)
.+.|++++
T Consensus 181 FcMcNPPF 188 (419)
T KOG2912|consen 181 FCMCNPPF 188 (419)
T ss_pred EEecCCch
Confidence 99998875
|
|
| >cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.41 Score=32.12 Aligned_cols=78 Identities=12% Similarity=0.128 Sum_probs=51.1
Q ss_pred EEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEcc
Q 028002 72 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGA 151 (215)
Q Consensus 72 vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~ 151 (215)
|| +.||.|..|..+++.+ ++.+++.+. .+++......+.....+.+|+|+..+
T Consensus 3 Il-l~C~~GaSSs~la~km-------------------~~~a~~~gi-------~~~i~a~~~~e~~~~~~~~Dvill~P 55 (99)
T cd05565 3 VL-VLCAGGGTSGLLANAL-------------------NKGAKERGV-------PLEAAAGAYGSHYDMIPDYDLVILAP 55 (99)
T ss_pred EE-EECCCCCCHHHHHHHH-------------------HHHHHHCCC-------cEEEEEeeHHHHHHhccCCCEEEEcC
Confidence 44 5578886666666554 233333332 35555555444322235799999999
Q ss_pred CCCCchHHHHHhcCCCcEEEEEeCC
Q 028002 152 AAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 152 ~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
...+..+.+.+.+.+.|.-+..++.
T Consensus 56 Qv~~~~~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 56 QMASYYDELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred hHHHHHHHHHHHhhhcCCCEEEeCH
Confidence 9999999999999998887766653
|
In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.76 Score=33.21 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=26.3
Q ss_pred EEcCCcc--HHHHHHH-HHhCCCCeEEEEecChHHHHHHHHH
Q 028002 74 DIGSGTG--YLTACFA-LMVGPQGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 74 diG~G~G--~~~~~l~-~~~~~~~~v~~~D~s~~~~~~a~~~ 112 (215)
|+|+..| ..+..++ +..++..+++++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6665554 3445668999999999999988888
|
; PDB: 2PY6_A. |
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=90.47 E-value=4.8 Score=33.76 Aligned_cols=101 Identities=20% Similarity=0.142 Sum_probs=60.0
Q ss_pred CCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE-EEeC-C--------
Q 028002 66 LKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS-VHVG-D-------- 133 (215)
Q Consensus 66 ~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~-~~~~-d-------- 133 (215)
+.++.+||-.|+ |. |..+..+++..| .++++++.++...+.+++ +..... +...... +... +
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G--~~vv~~~~s~~~~~~~~~-~G~~~~---i~~~~~~~~~~~~~~~~~~~~~ 264 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAG--ANPVAVVSSEEKAEYCRA-LGAEGV---INRRDFDHWGVLPDVNSEAYTA 264 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH-cCCCEE---Ecccccccccccccccchhhhh
Confidence 567889999997 44 778888888875 567788888888877765 221000 0000000 0000 0
Q ss_pred -------CCC---CCCCCC-CccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 134 -------GRK---GWPEFA-PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 134 -------~~~---~~~~~~-~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
... ...... .+|+|+..... .......+.++++|.++..
T Consensus 265 ~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l~~~G~~v~~ 314 (393)
T cd08246 265 WTKEARRFGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVCDRGGMVVIC 314 (393)
T ss_pred hhhccchHHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHhccCCEEEEE
Confidence 000 011112 58999876543 4567788999999999874
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.42 E-value=4.2 Score=33.28 Aligned_cols=92 Identities=22% Similarity=0.222 Sum_probs=56.0
Q ss_pred CCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC----CCCC
Q 028002 66 LKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR----KGWP 139 (215)
Q Consensus 66 ~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~----~~~~ 139 (215)
+.++.+||-.|+ |. |..+..+++..| .++++++.+. ..+.+++ .+. . .+...+.. ....
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~vi~~~~~~-~~~~~~~----~g~------~--~~~~~~~~~~~~~~~~ 239 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRG--AIVIAVAGAA-KEEAVRA----LGA------D--TVILRDAPLLADAKAL 239 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCch-hhHHHHh----cCC------e--EEEeCCCccHHHHHhh
Confidence 677899999998 43 777788888876 4677777543 4444432 221 1 11111100 0011
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
....+|+|+....- ...+...+.|+++|.++..
T Consensus 240 ~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~ 272 (350)
T cd08274 240 GGEPVDVVADVVGG-PLFPDLLRLLRPGGRYVTA 272 (350)
T ss_pred CCCCCcEEEecCCH-HHHHHHHHHhccCCEEEEe
Confidence 22469999866543 4567789999999998753
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.61 Score=31.05 Aligned_cols=76 Identities=11% Similarity=0.041 Sum_probs=47.2
Q ss_pred EcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC
Q 028002 75 IGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP 154 (215)
Q Consensus 75 iG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~ 154 (215)
+.||+|..|..+++.+ ++.+.+.+. .+++...+..+.......||+|+..+.+.
T Consensus 4 ~~Cg~G~sTS~~~~ki-------------------~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~Diil~~Pqv~ 57 (96)
T cd05564 4 LVCSAGMSTSILVKKM-------------------KKAAEKRGI-------DAEIEAVPESELEEYIDDADVVLLGPQVR 57 (96)
T ss_pred EEcCCCchHHHHHHHH-------------------HHHHHHCCC-------ceEEEEecHHHHHHhcCCCCEEEEChhHH
Confidence 5588887666555443 334444332 35666666544322225799999999988
Q ss_pred CchHHHHHhcCCCcEEEEEeCC
Q 028002 155 EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 155 ~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
...+.+.+...+.+.=+..++.
T Consensus 58 ~~~~~i~~~~~~~~~pv~~I~~ 79 (96)
T cd05564 58 YMLDEVKKKAAEYGIPVAVIDM 79 (96)
T ss_pred HHHHHHHHHhccCCCcEEEcCh
Confidence 8888888766666655554443
|
In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d |
| >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=90.30 E-value=3.6 Score=33.67 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=60.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CCCCC---CCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRK---GWPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d~~~---~~~~ 140 (215)
..++.+||-.|+|. |..+..+++..| .++++++.+++..+.+++ + +.. .-+.... .+... ....
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~-~---g~~-----~~i~~~~~~~~~~~~~~~~~ 231 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASALG--ARVIAVDIDDDKLELARE-L---GAV-----ATVNASEVEDVAAAVRDLTG 231 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH-h---CCC-----EEEccccchhHHHHHHHHhC
Confidence 56778999999765 777777888765 578999888887776643 2 211 0011111 11110 0112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+.+|+|+.............+.|+++|.++..
T Consensus 232 -~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 232 -GGAHVSVDALGIPETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred -CCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEe
Confidence 26999987654445567788999999998864
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=90.29 E-value=1.8 Score=33.18 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCc-cHH-HHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 68 PGMHALDIGSGT-GYL-TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~-~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
.+.+||-+|.|. |.- ...+.+. | ..|+.++.+.. ....+.... .++.++..+..... ...+|
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~-g--a~VtVvsp~~~--~~l~~l~~~---------~~i~~~~~~~~~~d--l~~~~ 71 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKA-G--AQLRVIAEELE--SELTLLAEQ---------GGITWLARCFDADI--LEGAF 71 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHC-C--CEEEEEcCCCC--HHHHHHHHc---------CCEEEEeCCCCHHH--hCCcE
Confidence 367999999987 433 2233333 3 67888876543 111111111 47888887765322 25689
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++......+-..+....+..|.++-...+
T Consensus 72 lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 72 LVIAATDDEELNRRVAHAARARGVPVNVVDD 102 (205)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCEEEECCC
Confidence 9998888877777788888888888754443
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.23 Score=36.31 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=50.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHH-HHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccE
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS-SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDA 146 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~-a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~ 146 (215)
+++++.+|+..-..=....+. |. .++..+|.++--++. .+.++. .+...++...+. -.++||.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-GA-~~iltveyn~L~i~~~~~dr~s-------------si~p~df~~~~~~y~~~fD~ 66 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-GA-AKILTVEYNKLEIQEEFRDRLS-------------SILPVDFAKNWQKYAGSFDF 66 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-CC-ceEEEEeecccccCcccccccc-------------cccHHHHHHHHHHhhccchh
Confidence 567888888865544444443 43 678888876522111 011100 011111111110 1156777
Q ss_pred EEEccCCCC-----------------chHHHHHhcCCCcEEEEEeCCCc
Q 028002 147 IHVGAAAPE-----------------IPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 147 V~~~~~~~~-----------------~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
+.+...+++ .+..+.++||+||.|++.+|-+.
T Consensus 67 ~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 67 AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 655554432 22467899999999999887653
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=89.66 E-value=1.8 Score=29.76 Aligned_cols=83 Identities=19% Similarity=0.188 Sum_probs=58.3
Q ss_pred CEEEEEcCCcc-HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCccEE
Q 028002 70 MHALDIGSGTG-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAI 147 (215)
Q Consensus 70 ~~vLdiG~G~G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~V 147 (215)
.+|.|+|-|.= ..+..++++ | ..++++|+++. .+. ..+.+...|..+.... -...|+|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~-g--~dv~atDI~~~---~a~--------------~g~~~v~DDitnP~~~iY~~A~lI 74 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAER-G--FDVLATDINEK---TAP--------------EGLRFVVDDITNPNISIYEGADLI 74 (129)
T ss_pred CcEEEEccchHHHHHHHHHHc-C--CcEEEEecccc---cCc--------------ccceEEEccCCCccHHHhhCccce
Confidence 49999999874 455556655 4 68999999886 111 3678888888764332 2468999
Q ss_pred EEccCCCCchHHHHHhcCC-CcEEEE
Q 028002 148 HVGAAAPEIPQALIDQLKP-GGRMVI 172 (215)
Q Consensus 148 ~~~~~~~~~~~~~~~~Lk~-gG~lv~ 172 (215)
++.-+.+++...+.++-+. |..+++
T Consensus 75 YSiRpppEl~~~ildva~aVga~l~I 100 (129)
T COG1255 75 YSIRPPPELQSAILDVAKAVGAPLYI 100 (129)
T ss_pred eecCCCHHHHHHHHHHHHhhCCCEEE
Confidence 9999998888877766544 444444
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=89.65 E-value=2.8 Score=33.88 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CCCCCCCCCCCCcc
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~D 145 (215)
.+.+|+-+|.|. |......++.+| .+|+.++.++...+.+. ..+ ..... .+..+. ...+|
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G--~~V~v~~R~~~~~~~~~----~~g---------~~~~~~~~l~~~---l~~aD 211 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALG--ARVFVGARSSADLARIT----EMG---------LIPFPLNKLEEK---VAEID 211 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HCC---------CeeecHHHHHHH---hccCC
Confidence 368999999986 554444444444 58999999886544332 111 11111 111111 14689
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 146 AIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+...+..-+.....+.++++. +++.+
T Consensus 212 iVint~P~~ii~~~~l~~~k~~a-liIDl 239 (287)
T TIGR02853 212 IVINTIPALVLTADVLSKLPKHA-VIIDL 239 (287)
T ss_pred EEEECCChHHhCHHHHhcCCCCe-EEEEe
Confidence 99987765434466777888864 45544
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=89.64 E-value=7.1 Score=31.61 Aligned_cols=95 Identities=14% Similarity=0.074 Sum_probs=50.8
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+||-+|||. |...+.-..+.|. ++++.+|.+. ...+.+.+++.+.. ++-+++
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGV-g~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-----p~V~V~ 92 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGV-KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-----PYVPVT 92 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-----CCCEEE
Confidence 57899999985 5544433333355 6888888553 23444555555533 123455
Q ss_pred EEeCCCCCCCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEE
Q 028002 129 VHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMV 171 (215)
Q Consensus 129 ~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv 171 (215)
.......... ...||+|++..........+.+..+..+.-+
T Consensus 93 ~~~~~~~~~~--l~~fdvVV~~~~~~~~~~~in~~c~~~~ipf 133 (286)
T cd01491 93 VSTGPLTTDE--LLKFQVVVLTDASLEDQLKINEFCHSPGIKF 133 (286)
T ss_pred EEeccCCHHH--HhcCCEEEEecCCHHHHHHHHHHHHHcCCEE
Confidence 5554422211 1579998877653333233444444344333
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=89.62 E-value=2.3 Score=32.15 Aligned_cols=84 Identities=15% Similarity=-0.026 Sum_probs=58.7
Q ss_pred CCCCCEEEEEcCC-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 66 LKPGMHALDIGSG-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
...+..+|-+|+= +|.....+... ..+|+.+|+.+.+..... ++++|... .. +..+.+
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~---~~~vtv~Di~p~~r~~lp--------------~~v~Fr~~--~~--~~~G~~ 100 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK---ADKVTVVDIHPFMRGFLP--------------NNVKFRNL--LK--FIRGEV 100 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc---cceEEEecCCHHHHhcCC--------------CCccHhhh--cC--CCCCce
Confidence 4556899999987 47776666544 379999999997643321 45555443 11 223789
Q ss_pred cEEEEccCCCCchHHHHHhcCCCcEE
Q 028002 145 DAIHVGAAAPEIPQALIDQLKPGGRM 170 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~gG~l 170 (215)
|+|+....+-.+-.+..+-+.|+-.+
T Consensus 101 DlivDlTGlGG~~Pe~L~~fnp~vfi 126 (254)
T COG4017 101 DLIVDLTGLGGIEPEFLAKFNPKVFI 126 (254)
T ss_pred eEEEeccccCCCCHHHHhccCCceEE
Confidence 99999988888888888888886443
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=89.60 E-value=2.1 Score=30.36 Aligned_cols=76 Identities=14% Similarity=0.120 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.+.++|-+|+|. |......+...|. .+++.+..+....+...+.+.. ..+.+...+-.. .....+|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~---------~~~~~~~~~~~~--~~~~~~Di 78 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGG---------VNIEAIPLEDLE--EALQEADI 78 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTG---------CSEEEEEGGGHC--HHHHTESE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCc---------cccceeeHHHHH--HHHhhCCe
Confidence 478999999985 4444444444354 5799999998766655554421 355555443222 11257999
Q ss_pred EEEccCCCC
Q 028002 147 IHVGAAAPE 155 (215)
Q Consensus 147 V~~~~~~~~ 155 (215)
|+...+...
T Consensus 79 vI~aT~~~~ 87 (135)
T PF01488_consen 79 VINATPSGM 87 (135)
T ss_dssp EEE-SSTTS
T ss_pred EEEecCCCC
Confidence 998877653
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=89.54 E-value=1.4 Score=37.15 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=35.4
Q ss_pred HHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH
Q 028002 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 59 l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~ 113 (215)
++.|. +.++++||-|++|.......+. . +| .+|++||+++......+=++
T Consensus 28 ~~aL~--i~~~d~vl~ItSaG~N~L~yL~-~-~P-~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 28 MEALN--IGPDDRVLTITSAGCNALDYLL-A-GP-KRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HHHhC--CCCCCeEEEEccCCchHHHHHh-c-CC-ceEEEEeCCHHHHHHHHHHH
Confidence 45555 8899999999776554444443 3 56 79999999998766654433
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.67 Score=41.03 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=34.8
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecCh
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIP 103 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~ 103 (215)
.+.++..|||+||.+|+....+++.++..+-|+|+|+-+
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 467888999999999999999999987778999999866
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.53 E-value=2.1 Score=34.45 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=42.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 116 (215)
...+++.|||--+|+|.......... ...+++|+++..++.+.+++...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHHHhh
Confidence 37889999999999999888777663 78999999999999999988754
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=89.51 E-value=2.1 Score=35.77 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=46.4
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
+.+||-+|||. |......+.+.|- ++++.+|.+. ...+.+++++.+..- .-+++
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np-----~v~v~ 101 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGV-GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNP-----DVKVT 101 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCC-----CcEEE
Confidence 57999999996 6655544444455 7899888664 345566666665431 12344
Q ss_pred EEeCCCCCCC--CCCCCccEEEEccCC
Q 028002 129 VHVGDGRKGW--PEFAPYDAIHVGAAA 153 (215)
Q Consensus 129 ~~~~d~~~~~--~~~~~~D~V~~~~~~ 153 (215)
.......... .....||+|+....-
T Consensus 102 ~~~~~i~~~~~~~~~~~~DvVvd~~d~ 128 (355)
T PRK05597 102 VSVRRLTWSNALDELRDADVILDGSDN 128 (355)
T ss_pred EEEeecCHHHHHHHHhCCCEEEECCCC
Confidence 4433333211 011469999887654
|
|
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=89.45 E-value=0.96 Score=36.08 Aligned_cols=94 Identities=21% Similarity=0.239 Sum_probs=60.0
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------ 136 (215)
.+.++.+||-.|+ | .|..+..+++..| .++++++.++...+.+++ .+. . .+.......
T Consensus 133 ~~~~g~~vlI~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~------~--~~~~~~~~~~~~~~~ 198 (320)
T cd05286 133 PVKPGDTVLVHAAAGGVGLLLTQWAKALG--ATVIGTVSSEEKAELARA----AGA------D--HVINYRDEDFVERVR 198 (320)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----CCC------C--EEEeCCchhHHHHHH
Confidence 3567889999994 4 4778888888875 578898888877766643 121 1 111111100
Q ss_pred CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 137 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.......+|+|+....- .......+.|+++|.++..
T Consensus 199 ~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 199 EITGGRGVDVVYDGVGK-DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred HHcCCCCeeEEEECCCc-HhHHHHHHhhccCcEEEEE
Confidence 11122469999876543 4567788999999998864
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.35 E-value=0.22 Score=41.98 Aligned_cols=66 Identities=20% Similarity=0.160 Sum_probs=53.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 138 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 138 (215)
.++|..|-|+.||.|-.++.+++.. ..|++.|.+++++++.+.++.-+.+. ..++++...|+....
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNkv~----~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIKLNKVD----PSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhccccccc----hhheeeecccHHHHh
Confidence 6788999999999999999998874 89999999999999999988766543 234666666655433
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=89.33 E-value=0.11 Score=35.32 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=23.4
Q ss_pred CccEEEEccCC------------CCchHHHHHhcCCCcEEEEE
Q 028002 143 PYDAIHVGAAA------------PEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 143 ~~D~V~~~~~~------------~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.||+|+|-... ..+.+.+...|+|||.|++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999887754 23456788999999999995
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=89.26 E-value=5.4 Score=31.91 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=59.7
Q ss_pred CCCCCEEEEEcCC--ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028002 66 LKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
..++.+||-.|++ .|..+..+++..| .+++++..++...+.+++ .+. ..+-....+... ..
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~------~~~~~~~~~~~~~i~~~-- 205 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPERAALLKE----LGA------DEVVIDDGAIAEQLRAA-- 205 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCC------cEEEecCccHHHHHHHh--
Confidence 5678899999863 4788888888875 578988888876666532 221 111100111100 11
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+|+++....- .....+.+.|+++|.++..
T Consensus 206 ~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 206 PGGFDKVLELVGT-ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CCCceEEEECCCh-HHHHHHHHHhccCCEEEEE
Confidence 2569999866543 4567788999999998764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=89.13 E-value=6.3 Score=32.91 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=58.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC--CCC---CC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD--GRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d--~~~---~~ 138 (215)
+++++.+||-.|+|. |..+..+++..|. .+++.++.++...+.+++ + +.. .-+.....+ ... ..
T Consensus 187 ~~~~g~~VlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~a~~-l---Ga~-----~~i~~~~~~~~~~~~v~~~ 256 (373)
T cd08299 187 KVTPGSTCAVFGLGGVGLSAIMGCKAAGA-SRIIAVDINKDKFAKAKE-L---GAT-----ECINPQDYKKPIQEVLTEM 256 (373)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH-c---CCc-----eEecccccchhHHHHHHHH
Confidence 367788999998875 6677777777652 379999998887777743 2 211 011111101 000 01
Q ss_pred CCCCCccEEEEccCCCCchHH-HHHhcCCCcEEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIPQA-LIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~-~~~~Lk~gG~lv~~ 173 (215)
.. +.+|+|+........... +...++++|.++..
T Consensus 257 ~~-~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~ 291 (373)
T cd08299 257 TD-GGVDFSFEVIGRLDTMKAALASCHEGYGVSVIV 291 (373)
T ss_pred hC-CCCeEEEECCCCcHHHHHHHHhhccCCCEEEEE
Confidence 12 469999887665455555 44455678888765
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=89.05 E-value=2 Score=35.59 Aligned_cols=79 Identities=20% Similarity=0.174 Sum_probs=45.0
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh---------------------HHHHHHHHHHHhhcccCcccCCC
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP---------------------ELVVSSIQNIEKSAAAPLLKEGS 126 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~---------------------~~~~~a~~~~~~~~~~~~~~~~~ 126 (215)
..+|+-+|||. |......+.+.|. ++++.+|.+. ...+.+++++....- .-+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp-----~v~ 97 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGV-GKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINS-----DVR 97 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCC-----CcE
Confidence 57899999996 6554444444355 7899999863 233444555544321 123
Q ss_pred eEEEeCCCCCCC--CCCCCccEEEEccCC
Q 028002 127 LSVHVGDGRKGW--PEFAPYDAIHVGAAA 153 (215)
Q Consensus 127 v~~~~~d~~~~~--~~~~~~D~V~~~~~~ 153 (215)
++....+..... .-...||+|+....-
T Consensus 98 v~~~~~~~~~~~~~~~~~~~DlVid~~Dn 126 (339)
T PRK07688 98 VEAIVQDVTAEELEELVTGVDLIIDATDN 126 (339)
T ss_pred EEEEeccCCHHHHHHHHcCCCEEEEcCCC
Confidence 444444443211 112569999877554
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=89.03 E-value=6.6 Score=32.03 Aligned_cols=96 Identities=24% Similarity=0.299 Sum_probs=61.5
Q ss_pred CCCCCEEEEEcCC--ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-CCCC---CCC
Q 028002 66 LKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRK---GWP 139 (215)
Q Consensus 66 ~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~---~~~ 139 (215)
..++.+||-.|++ .|..+..+++..| .+++++..++...+.+++ + +. +.+-.... +... ...
T Consensus 163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~------~~v~~~~~~~~~~~~~~~~ 230 (341)
T cd08297 163 LKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKE-L---GA------DAFVDFKKSDDVEAVKELT 230 (341)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH-c---CC------cEEEcCCCccHHHHHHHHh
Confidence 6778899999886 4778888888876 578999888876665532 2 11 11100011 1100 011
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
....+|+|+...........+.+.++++|.++..
T Consensus 231 ~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 231 GGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred cCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEe
Confidence 2256999997555455677888999999999875
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=88.93 E-value=8.7 Score=31.40 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=52.9
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CCCCCCCCCCCCc
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~ 144 (215)
.++.+|+-+|+|. |......+...+. .+++.++.++...+...+.+. . .... .+..+. ...+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g-----------~-~~~~~~~~~~~---l~~a 239 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELG-----------G-NAVPLDELLEL---LNEA 239 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcC-----------C-eEEeHHHHHHH---HhcC
Confidence 3578999999986 6555544444232 689999999875433332221 1 1111 111111 1358
Q ss_pred cEEEEccCCCCch---HHHHHhcCCCcEEEEEeCC
Q 028002 145 DAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+|+...+.++.. ..+......+|.+++-+..
T Consensus 240 DvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 240 DVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred CEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence 9999888877652 2222223335778876544
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=88.76 E-value=6.1 Score=32.07 Aligned_cols=93 Identities=11% Similarity=0.017 Sum_probs=54.6
Q ss_pred CCEEEEE--cCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCCCC
Q 028002 69 GMHALDI--GSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEFA 142 (215)
Q Consensus 69 ~~~vLdi--G~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~~ 142 (215)
+..++-+ |+|. |..+..+++..| .++++++.++...+.+++ .+.. .-+.....+... ......
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~~~~~~~~~----~g~~-----~~i~~~~~~~~~~v~~~~~~~ 211 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRKEQVDLLKK----IGAE-----YVLNSSDPDFLEDLKELIAKL 211 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCc-----EEEECCCccHHHHHHHHhCCC
Confidence 3344443 6654 778888888876 579999998887777754 2211 001111111111 011224
Q ss_pred CccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 143 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+|+|+....-. ......+.++++|.++..
T Consensus 212 ~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 212 NATIFFDAVGGG-LTGQILLAMPYGSTLYVY 241 (324)
T ss_pred CCcEEEECCCcH-HHHHHHHhhCCCCEEEEE
Confidence 689998765543 345568889999998874
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=88.74 E-value=6.5 Score=32.07 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=54.0
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
....+++-+|||. |...........+..++...+.++...+...+.+... .+.+...+..+.. ...|
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~---------~~~~~~~~~~~av---~~aD 190 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL---------GPTAEPLDGEAIP---EAVD 190 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc---------CCeeEECCHHHHh---hcCC
Confidence 4457999999997 5555544433334468999999988777666655432 1222222222221 4689
Q ss_pred EEEEccCCCC-chHHHHHhcCCCcEEEEEeC
Q 028002 146 AIHVGAAAPE-IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 146 ~V~~~~~~~~-~~~~~~~~Lk~gG~lv~~~~ 175 (215)
+|++..+..+ +++. .+|||- .+..++
T Consensus 191 iVitaT~s~~Pl~~~---~~~~g~-hi~~iG 217 (304)
T PRK07340 191 LVVTATTSRTPVYPE---AARAGR-LVVAVG 217 (304)
T ss_pred EEEEccCCCCceeCc---cCCCCC-EEEecC
Confidence 9887765543 3332 367664 444443
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=88.70 E-value=4.9 Score=30.51 Aligned_cols=89 Identities=15% Similarity=0.088 Sum_probs=47.3
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChH-------------------HHHHHHHHHHhhcccCcccCCCeE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPE-------------------LVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~-------------------~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+|+-+|||. |........+.|. ++++.+|.+.- ..+.+++++++..- .-+++
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GV-g~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp-----~v~i~ 94 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGI-GSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNP-----RVKVS 94 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCC-CEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCC-----CCEEE
Confidence 57899999986 5544444444455 78999986531 23444555554321 12444
Q ss_pred EEeCCCCCCCC-CCCCccEEEEccCCCCchHHHHHh
Q 028002 129 VHVGDGRKGWP-EFAPYDAIHVGAAAPEIPQALIDQ 163 (215)
Q Consensus 129 ~~~~d~~~~~~-~~~~~D~V~~~~~~~~~~~~~~~~ 163 (215)
.......+... -...||+|++..........+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~ 130 (197)
T cd01492 95 VDTDDISEKPEEFFSQFDVVVATELSRAELVKINEL 130 (197)
T ss_pred EEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHH
Confidence 44443332111 015799999776543333333333
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.62 E-value=2.2 Score=34.76 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=59.6
Q ss_pred CCCCCEEEEEcCC--ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028002 66 LKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
..++.+||-.|++ .|..+..+++..| .++++++.++...+.+++. ...-. . .. .+ ..+... . +.
T Consensus 160 ~~~~~~vlI~g~~g~~g~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~-~~~~~----~-~~-~~-~~~v~~-~---~~ 225 (334)
T PRK13771 160 VKKGETVLVTGAGGGVGIHAIQVAKALG--AKVIAVTSSESKAKIVSKY-ADYVI----V-GS-KF-SEEVKK-I---GG 225 (334)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHH-HHHhc----C-ch-hH-HHHHHh-c---CC
Confidence 6778899999984 3888888888875 5788888888887777543 11100 0 00 00 000111 1 25
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+++....- .....+.+.|+++|.++..
T Consensus 226 ~d~~ld~~g~-~~~~~~~~~l~~~G~~v~~ 254 (334)
T PRK13771 226 ADIVIETVGT-PTLEESLRSLNMGGKIIQI 254 (334)
T ss_pred CcEEEEcCCh-HHHHHHHHHHhcCCEEEEE
Confidence 8988866443 3457788899999998764
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=88.59 E-value=3.1 Score=30.94 Aligned_cols=32 Identities=22% Similarity=0.107 Sum_probs=21.5
Q ss_pred EEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh
Q 028002 71 HALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP 103 (215)
Q Consensus 71 ~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~ 103 (215)
+|+-+|||. |........+.|. ++++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 478899995 6544444334354 6799998775
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases | Back alignment and domain information |
|---|
Probab=88.53 E-value=3.1 Score=32.98 Aligned_cols=95 Identities=22% Similarity=0.223 Sum_probs=55.5
Q ss_pred CCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028002 66 LKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
..++.+||-.|+ | .|..+..+++..| .++++++.++ ..+.+++ .+.. .-+.....+... ......
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~-~~~~~~~----~g~~-----~~~~~~~~~~~~-~~~~~~ 208 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARG--ARVIATASAA-NADFLRS----LGAD-----EVIDYTKGDFER-AAAPGG 208 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEecch-hHHHHHH----cCCC-----EEEeCCCCchhh-ccCCCC
Confidence 567889999986 4 3677777777765 5677777655 4444422 2211 011111111111 122246
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+++....-. ....+.+.++++|.++...
T Consensus 209 ~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 209 VDAVLDTVGGE-TLARSLALVKPGGRLVSIA 238 (309)
T ss_pred ceEEEECCchH-HHHHHHHHHhcCcEEEEEc
Confidence 89888654433 5677888999999988653
|
Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=88.52 E-value=3 Score=32.64 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=24.6
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP 103 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~ 103 (215)
..+|+-+|||. |......+.+.|- ++++.+|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GV-g~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGV-GKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 57899999995 7666555545455 7899998654
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=88.45 E-value=0.83 Score=34.03 Aligned_cols=86 Identities=19% Similarity=0.175 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.+.+|.-+|+|. |......++.+| .+|+++|.+........ . ..+ ...+..+.+ ...|+
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~~----~---------~~~--~~~~l~ell---~~aDi 94 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGAD----E---------FGV--EYVSLDELL---AQADI 94 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHHH----H---------TTE--EESSHHHHH---HH-SE
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhcc----c---------ccc--eeeehhhhc---chhhh
Confidence 378999999997 777777777766 69999999987655111 1 122 122222221 34688
Q ss_pred EEEccCCC----Cc-hHHHHHhcCCCcEEEEE
Q 028002 147 IHVGAAAP----EI-PQALIDQLKPGGRMVIP 173 (215)
Q Consensus 147 V~~~~~~~----~~-~~~~~~~Lk~gG~lv~~ 173 (215)
|+...++. ++ -++....+|+|.+|+=.
T Consensus 95 v~~~~plt~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 95 VSLHLPLTPETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp EEE-SSSSTTTTTSBSHHHHHTSTTTEEEEES
T ss_pred hhhhhccccccceeeeeeeeeccccceEEEec
Confidence 87776642 23 36788899988766553
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.21 E-value=0.42 Score=36.84 Aligned_cols=57 Identities=16% Similarity=0.108 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~ 113 (215)
++.++++.+. ..++.+.+|..-|.|..+..+.+.. +..++++.|.+|.+.+.|..-.
T Consensus 31 m~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 31 MLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred ehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhh
Confidence 4677888887 7778999999999999999998884 6688999999998888776544
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=88.16 E-value=2.8 Score=29.38 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCcc-HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCcc
Q 028002 68 PGMHALDIGSGTG-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D 145 (215)
...+|+|+|-|.- ..+..+.+. | ..|+++|+.+. .+. ..+.++..|+.+.... -...|
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~-G--~dV~~tDi~~~---~a~--------------~g~~~v~DDif~P~l~iY~~a~ 72 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER-G--FDVIATDINPR---KAP--------------EGVNFVVDDIFNPNLEIYEGAD 72 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH-S---EEEEE-SS-S---------------------STTEE---SSS--HHHHTTEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHc-C--CcEEEEECccc---ccc--------------cCcceeeecccCCCHHHhcCCc
Confidence 3459999999985 455555555 4 78999999987 111 3567788887763321 14689
Q ss_pred EEEEccCCCCchHHHHHhcCC-CcEEEEE
Q 028002 146 AIHVGAAAPEIPQALIDQLKP-GGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~-gG~lv~~ 173 (215)
+|++..+..++...+.++-+. |.-+++.
T Consensus 73 lIYSiRPP~El~~~il~lA~~v~adlii~ 101 (127)
T PF03686_consen 73 LIYSIRPPPELQPPILELAKKVGADLIIR 101 (127)
T ss_dssp EEEEES--TTSHHHHHHHHHHHT-EEEEE
T ss_pred EEEEeCCChHHhHHHHHHHHHhCCCEEEE
Confidence 999999999988877766544 4555553
|
; PDB: 2K4M_A. |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=88.13 E-value=5.6 Score=31.85 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=24.7
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecC
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHI 102 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s 102 (215)
+.+|+-+|||. |......+.+.|- ++++.+|.+
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GV-g~itLiD~D 63 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGI-GAITLIDMD 63 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence 57899999996 7666655555455 689999866
|
|
| >TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component | Back alignment and domain information |
|---|
Probab=88.11 E-value=0.99 Score=30.01 Aligned_cols=80 Identities=11% Similarity=0.105 Sum_probs=49.4
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEE
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 149 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~ 149 (215)
.+|| +.||+|..|..++..+ ++.+...+. .+++...+..+.......+|+|+.
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k~-------------------~~~~~~~gi-------~~~v~a~~~~~~~~~~~~~Dvill 56 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNKM-------------------NKAAEEYGV-------PVKIAAGSYGAAGEKLDDADVVLL 56 (95)
T ss_pred cEEE-EECCCchhHHHHHHHH-------------------HHHHHHCCC-------cEEEEEecHHHHHhhcCCCCEEEE
Confidence 3555 5688887666665443 233333332 455666555433222256899999
Q ss_pred ccCCCCchHHHHHhcCCCcEEEEEeCC
Q 028002 150 GAAAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 150 ~~~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.+...+..+++.+.+.+-|.=+..++.
T Consensus 57 ~pqi~~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 57 APQVAYMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred CchHHHHHHHHHHHhhhcCCCEEEeCh
Confidence 999988888888888776655555544
|
Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.76 E-value=11 Score=28.93 Aligned_cols=97 Identities=18% Similarity=0.133 Sum_probs=56.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--------
Q 028002 69 GMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-------- 139 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-------- 139 (215)
+.+||-.|++ |.++..+++.+ ....+|++++.++...+...+.+... .++.++.+|..+...
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--------GNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------CCeEEEECCCCCHHHHHHHHHHH
Confidence 5689999986 44444444433 12258999999887665554433321 356778888765210
Q ss_pred --CCCCccEEEEccCCCC-----------------------chHHHHHhcCCCcEEEEEe
Q 028002 140 --EFAPYDAIHVGAAAPE-----------------------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 140 --~~~~~D~V~~~~~~~~-----------------------~~~~~~~~Lk~gG~lv~~~ 174 (215)
..+.+|.++.+..... +.+.+.+.++.+|.+++..
T Consensus 76 ~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 76 AKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 0135687776654211 1234456667788777654
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=87.57 E-value=5.3 Score=32.12 Aligned_cols=94 Identities=19% Similarity=0.209 Sum_probs=47.6
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 70 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 70 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
++|.-+|+|. |. ++..+++. | .+|+.++.++..++..++ .+.. +....... .............+|+|
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~-g--~~V~~~~r~~~~~~~~~~----~g~~--~~~~~~~~-~~~~~~~~~~~~~~d~v 70 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA-G--HDVTLVARRGAHLDALNE----NGLR--LEDGEITV-PVLAADDPAELGPQDLV 70 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C--CeEEEEECChHHHHHHHH----cCCc--ccCCceee-cccCCCChhHcCCCCEE
Confidence 3688899987 43 33344443 3 589999987766554433 1210 00011110 00011111112578998
Q ss_pred EEccCCCC---chHHHHHhcCCCcEEEEE
Q 028002 148 HVGAAAPE---IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 148 ~~~~~~~~---~~~~~~~~Lk~gG~lv~~ 173 (215)
+....... +.+.+...+.++..++..
T Consensus 71 ila~k~~~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 71 ILAVKAYQLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred EEecccccHHHHHHHHhhhcCCCCEEEEe
Confidence 77765443 334555666666665543
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=4.5 Score=32.94 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=50.7
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 70 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 70 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
++|+-+|+|. |. ++..+++. | ..|+.++.+...++..++. .+..- ................ ...+.||+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G--~~V~lv~r~~~~~~~i~~~---~Gl~i-~~~g~~~~~~~~~~~~-~~~~~~D~v 74 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-G--LPVRLILRDRQRLAAYQQA---GGLTL-VEQGQASLYAIPAETA-DAAEPIHRL 74 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-C--CCeEEEEechHHHHHHhhc---CCeEE-eeCCcceeeccCCCCc-ccccccCEE
Confidence 6799999997 54 55555554 4 5799999877655544431 11100 0001111111111111 122579988
Q ss_pred EEccCCCC---chHHHHHhcCCCcEEEEE
Q 028002 148 HVGAAAPE---IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 148 ~~~~~~~~---~~~~~~~~Lk~gG~lv~~ 173 (215)
+...-..+ .++.+..++.++..++..
T Consensus 75 iv~vK~~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 75 LLACKAYDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred EEECCHHhHHHHHHHHHhhCCCCCEEEEE
Confidence 77654433 445667778888765553
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=87.38 E-value=3.2 Score=31.92 Aligned_cols=33 Identities=21% Similarity=0.061 Sum_probs=23.7
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecC
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHI 102 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s 102 (215)
..+|+-+|||. |........+.|. ++++.+|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gv-g~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGV-GNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 56899999996 6555444444455 689999887
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=87.27 E-value=4.2 Score=35.07 Aligned_cols=74 Identities=22% Similarity=0.340 Sum_probs=48.8
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
+++|+-+|-|- |.....+....| ..|+..|.++.......+.... +.+.+..+.... .....+|+|
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~~~~~~~~~~~---------~~i~~~~g~~~~--~~~~~~d~v 73 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAPEGLAAQPLLL---------EGIEVELGSHDD--EDLAEFDLV 73 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCccchhhhhhhc---------cCceeecCccch--hccccCCEE
Confidence 78999999995 765555555544 7999999888763222221111 567777765444 222679999
Q ss_pred EEccCCCC
Q 028002 148 HVGAAAPE 155 (215)
Q Consensus 148 ~~~~~~~~ 155 (215)
+.++.++.
T Consensus 74 V~SPGi~~ 81 (448)
T COG0771 74 VKSPGIPP 81 (448)
T ss_pred EECCCCCC
Confidence 99987753
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=87.06 E-value=9.5 Score=32.67 Aligned_cols=89 Identities=17% Similarity=0.118 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE
Q 028002 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 129 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~ 129 (215)
.+.....+...+........+++-+|+|. .+..+++.+.. ...++.+|.+++.++..++.. ..+.+
T Consensus 213 ~~~~l~~~~~~~~~~~~~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----------~~~~~ 279 (453)
T PRK09496 213 AREHIRAVMSEFGRLEKPVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----------PNTLV 279 (453)
T ss_pred CHHHHHHHHHHhCccCCCCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----------CCCeE
Confidence 34445555555543344467899998865 33334433311 268999999999877665432 24567
Q ss_pred EeCCCCCCC----CCCCCccEEEEccC
Q 028002 130 HVGDGRKGW----PEFAPYDAIHVGAA 152 (215)
Q Consensus 130 ~~~d~~~~~----~~~~~~D~V~~~~~ 152 (215)
+.+|..+.. .....+|.|++...
T Consensus 280 i~gd~~~~~~L~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 280 LHGDGTDQELLEEEGIDEADAFIALTN 306 (453)
T ss_pred EECCCCCHHHHHhcCCccCCEEEECCC
Confidence 888876421 12256787776544
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.05 E-value=3.2 Score=33.90 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=48.5
Q ss_pred CCEEEEEcCCc-c-HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 69 GMHALDIGSGT-G-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 69 ~~~vLdiG~G~-G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.++|+-+|+|. | .++..+++. | ..|+.+..++. +.. ...+..-........+..............+|+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~-g--~~V~~~~r~~~--~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 75 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA-G--FDVHFLLRSDY--EAV----RENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDW 75 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-C--CeEEEEEeCCH--HHH----HhCCeEEEeCCCCeeecCceEEcchhhcCCCCE
Confidence 46899999996 5 455555554 3 57777776652 221 122211000001111111111111112257999
Q ss_pred EEEccCCCC---chHHHHHhcCCCcEEEEE
Q 028002 147 IHVGAAAPE---IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 147 V~~~~~~~~---~~~~~~~~Lk~gG~lv~~ 173 (215)
|+....... ..+.+...+++++.++..
T Consensus 76 vilavK~~~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 76 VLVGLKTTANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred EEEEecCCChHhHHHHHhhhcCCCCEEEEe
Confidence 877754433 445677788888876654
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=87.04 E-value=2.7 Score=35.39 Aligned_cols=80 Identities=20% Similarity=0.132 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecC-------------------hHHHHHHHHHHHhhcccCcccCCCe
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHI-------------------PELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s-------------------~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
.+.+|+-+|||. |......+.+.|. ++++.+|.+ ....+.+++++.+..- .-++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv-g~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np-----~v~v 207 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGV-GTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP-----DVQV 207 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC-----CCEE
Confidence 357899999985 6655544444455 789999987 3445556666655321 1233
Q ss_pred EEEeCCCCCCCC--CCCCccEEEEccCC
Q 028002 128 SVHVGDGRKGWP--EFAPYDAIHVGAAA 153 (215)
Q Consensus 128 ~~~~~d~~~~~~--~~~~~D~V~~~~~~ 153 (215)
............ -...+|+|+....-
T Consensus 208 ~~~~~~~~~~~~~~~~~~~D~Vv~~~d~ 235 (376)
T PRK08762 208 EAVQERVTSDNVEALLQDVDVVVDGADN 235 (376)
T ss_pred EEEeccCChHHHHHHHhCCCEEEECCCC
Confidence 333332221100 01469999876554
|
|
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=87.00 E-value=2.5 Score=34.18 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=40.0
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh
Q 028002 60 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116 (215)
Q Consensus 60 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 116 (215)
+.+. +..+.+|..+|+|.......+++. | .++.++|+++..+...+-++...
T Consensus 57 eam~--~g~ghrivtigSGGcn~L~ylsr~--P-a~id~VDlN~ahiAln~lklaA~ 108 (414)
T COG5379 57 EAMQ--LGIGHRIVTIGSGGCNMLAYLSRA--P-ARIDVVDLNPAHIALNRLKLAAF 108 (414)
T ss_pred HHHh--cCCCcEEEEecCCcchHHHHhhcC--C-ceeEEEeCCHHHHHHHHHHHHHH
Confidence 4454 778899999999987777777664 4 78999999999887766655543
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=86.94 E-value=1.5 Score=30.89 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=54.9
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+|+-+|||. |......+.+.|. ++++.+|.+. ...+.+++.+.+... .-++.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np-----~~~v~ 75 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINP-----DVEVE 75 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHST-----TSEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcC-----ceeee
Confidence 46899999985 7655544444465 7899988443 235556666665421 13555
Q ss_pred EEeCCCCCCCC--CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 129 VHVGDGRKGWP--EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 129 ~~~~d~~~~~~--~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
....++..... ....+|+|++...-......+.+.++..|.-++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~ 122 (135)
T PF00899_consen 76 AIPEKIDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFID 122 (135)
T ss_dssp EEESHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEE
T ss_pred eeecccccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEE
Confidence 55555522111 0147899987765544444455555555554443
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=86.88 E-value=2.4 Score=34.33 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=58.1
Q ss_pred CCCEEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 68 PGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
.+.+||-.|+ |. |.....+++..| .++++++.++...+.+++ + +....+..... ....... .. ...+|
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~~~v~~~~~~--~~~~~~~-~~-~~~~d 215 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLG--YEVVASTGKADAADYLKK-L---GAKEVIPREEL--QEESIKP-LE-KQRWA 215 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHH-c---CCCEEEcchhH--HHHHHHh-hc-cCCcC
Confidence 3568999987 44 777778888876 578999888887766643 2 21100000000 0000111 11 24689
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 146 AIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+....- .......+.|+++|.++...
T Consensus 216 ~vld~~g~-~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 216 GAVDPVGG-KTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred EEEECCcH-HHHHHHHHHhhcCCEEEEEe
Confidence 98865544 45677899999999998753
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=86.68 E-value=13 Score=29.94 Aligned_cols=94 Identities=19% Similarity=0.188 Sum_probs=57.2
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------ 136 (215)
.+.++.+||-.|+ | .|..+..+++..| .+++.+..++...+.+++ .+.. .+.......
T Consensus 136 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~----~g~~--------~~~~~~~~~~~~~i~ 201 (324)
T cd08292 136 GVKPGQWLIQNAAGGAVGKLVAMLAAARG--INVINLVRRDAGVAELRA----LGIG--------PVVSTEQPGWQDKVR 201 (324)
T ss_pred CCCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHh----cCCC--------EEEcCCCchHHHHHH
Confidence 3677889998876 4 4788888888876 456666555555444433 1211 111111100
Q ss_pred CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 137 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.......+|+|+....- .....+.+.|+++|.++..
T Consensus 202 ~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 202 EAAGGAPISVALDSVGG-KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred HHhCCCCCcEEEECCCC-hhHHHHHHhhcCCcEEEEE
Confidence 01122469999876554 3557788999999998864
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.61 E-value=4.1 Score=31.79 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=24.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP 103 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~ 103 (215)
+.+|+-+|||. |......+.+.|. ++++.+|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gv-g~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGV-GRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 57899999996 7655555445465 7899998543
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=86.58 E-value=3.8 Score=32.32 Aligned_cols=82 Identities=13% Similarity=0.048 Sum_probs=44.9
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+|+-+|||. |......+.+.|- ++++.+|.+. ...+.+++++.+..- .-+++
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp-----~v~i~ 105 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGV-GTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINP-----HIAIE 105 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCC-----CCEEE
Confidence 57999999985 6655544444454 6888887543 223444555544321 12344
Q ss_pred EEeCCCCCCCC--CCCCccEEEEccCCCCc
Q 028002 129 VHVGDGRKGWP--EFAPYDAIHVGAAAPEI 156 (215)
Q Consensus 129 ~~~~d~~~~~~--~~~~~D~V~~~~~~~~~ 156 (215)
.....+..... -...||+|+........
T Consensus 106 ~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~ 135 (245)
T PRK05690 106 TINARLDDDELAALIAGHDLVLDCTDNVAT 135 (245)
T ss_pred EEeccCCHHHHHHHHhcCCEEEecCCCHHH
Confidence 44433322110 11469999877665443
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=86.57 E-value=1.9 Score=34.95 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=59.2
Q ss_pred CCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028002 66 LKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
..++.+||-.|+ | .|..+..+++..| .++++++.++...+.+++.+.. . .-+.....+... ....
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~~g~---~-----~~~~~~~~~~~~~v~~~~~ 212 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLLG--ARVVGIAGSDEKCRWLVEELGF---D-----AAINYKTPDLAEALKEAAP 212 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhhcCC---c-----eEEecCChhHHHHHHHhcc
Confidence 566789998884 4 3778888888865 5789998888777766543211 0 001111101100 1112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+++....- .......+.|+++|.++..
T Consensus 213 -~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 213 -DGIDVYFDNVGG-EILDAALTLLNKGGRIALC 243 (329)
T ss_pred -CCceEEEEcchH-HHHHHHHHhcCCCceEEEE
Confidence 468998865443 4567788999999998754
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.54 E-value=2.2 Score=35.15 Aligned_cols=129 Identities=19% Similarity=0.162 Sum_probs=66.4
Q ss_pred CEEEEEcCCc-c-HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh-------cccCcccCCCeEEEeCCCCCCCCC
Q 028002 70 MHALDIGSGT-G-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-------AAAPLLKEGSLSVHVGDGRKGWPE 140 (215)
Q Consensus 70 ~~vLdiG~G~-G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~~~~~~~v~~~~~d~~~~~~~ 140 (215)
.+|--||+|+ | ..+..++.. | .+|+..|.+++..+.++..+... +........++.+.. +..+ .
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-G--~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~---a 80 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-G--LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEA---C 80 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-C--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHH---H
Confidence 5788999997 4 344444544 3 79999999998887766554321 100000001222111 1111 1
Q ss_pred CCCccEEEEccCC-----CCchHHHHHhcCCCcEEEEEeCCCc-eeEEEEEEcCCCceEEEeeceEEEeec
Q 028002 141 FAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIPVGNIF-QDLKVVDKNQDGSLSIWSETSVRYVPL 205 (215)
Q Consensus 141 ~~~~D~V~~~~~~-----~~~~~~~~~~Lk~gG~lv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ 205 (215)
....|+|+...+- +.+..++.+.++|+..|..++.... ..+....+..+.....+...+..++|+
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pL 151 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPL 151 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCce
Confidence 1457888876543 2344667788888875544443211 111111122234445565566666665
|
|
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.39 E-value=12 Score=30.18 Aligned_cols=97 Identities=13% Similarity=0.024 Sum_probs=58.7
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC-CCC---CC
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-GRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d-~~~---~~ 138 (215)
...++.+||-.|+ | .|..+..+++..| .+++.+..++...+.+++ + +.. .-+.....+ ... ..
T Consensus 137 ~~~~~~~vlI~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~~-----~~~~~~~~~~~~~~~~~~ 205 (334)
T PTZ00354 137 DVKKGQSVLIHAGASGVGTAAAQLAEKYG--AATIITTSSEEKVDFCKK-L---AAI-----ILIRYPDEEGFAPKVKKL 205 (334)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-c---CCc-----EEEecCChhHHHHHHHHH
Confidence 3567889999884 3 4788888888875 456667778877776643 2 211 001111111 100 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+++.... ........+.|+++|.++..
T Consensus 206 ~~~~~~d~~i~~~~-~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 206 TGEKGVNLVLDCVG-GSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred hCCCCceEEEECCc-hHHHHHHHHHhccCCeEEEE
Confidence 12246899987643 35567788999999998863
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.27 E-value=6.9 Score=33.08 Aligned_cols=33 Identities=15% Similarity=0.003 Sum_probs=25.0
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecC
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHI 102 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s 102 (215)
+.+|+-+|||. |+.....+.+.|. ++++.+|.+
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GV-geI~LVD~D 209 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPV-REIHLFDGD 209 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCC-CEEEEECCC
Confidence 57999999996 7766655555565 789999865
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=86.17 E-value=4 Score=34.59 Aligned_cols=80 Identities=20% Similarity=0.150 Sum_probs=46.1
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+||-+|||. |......+.+.|- ++++.+|.+. ...+.+++++.+..- .-+++
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gv-g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np-----~v~v~ 111 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGI-GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINP-----YCQVD 111 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCC-----CCeEE
Confidence 57999999996 6655544444465 7888888553 224445555554321 13455
Q ss_pred EEeCCCCCCCC--CCCCccEEEEccCCC
Q 028002 129 VHVGDGRKGWP--EFAPYDAIHVGAAAP 154 (215)
Q Consensus 129 ~~~~d~~~~~~--~~~~~D~V~~~~~~~ 154 (215)
.....+..... ....||+|+....-.
T Consensus 112 ~~~~~~~~~~~~~~~~~~D~Vvd~~d~~ 139 (390)
T PRK07411 112 LYETRLSSENALDILAPYDVVVDGTDNF 139 (390)
T ss_pred EEecccCHHhHHHHHhCCCEEEECCCCH
Confidence 55444433111 114699998876543
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.16 E-value=5.4 Score=35.27 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=59.2
Q ss_pred CCEEEEEcCCccHHHHHHHHHh---CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-----CC
Q 028002 69 GMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-----PE 140 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 140 (215)
+.+||--|. +|+.+..+++++ +| .+++.+|.++..+....+.++... +..++.+..+|+.+.- ..
T Consensus 250 gK~vLVTGa-gGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~-----~~~~~~~~igdVrD~~~~~~~~~ 322 (588)
T COG1086 250 GKTVLVTGG-GGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKF-----PELKLRFYIGDVRDRDRVERAME 322 (588)
T ss_pred CCEEEEeCC-CCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhC-----CCcceEEEecccccHHHHHHHHh
Confidence 678887774 566666665544 45 789999999999998888877642 2367889999988632 22
Q ss_pred CCCccEEEEccCCCCch
Q 028002 141 FAPYDAIHVGAAAPEIP 157 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~ 157 (215)
..+.|.|+-.+.+.|++
T Consensus 323 ~~kvd~VfHAAA~KHVP 339 (588)
T COG1086 323 GHKVDIVFHAAALKHVP 339 (588)
T ss_pred cCCCceEEEhhhhccCc
Confidence 24689999888776655
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=86.13 E-value=3.4 Score=31.49 Aligned_cols=43 Identities=23% Similarity=0.229 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 112 (215)
.+++|+-+|.|. |......+...| .+|+++|.++..++..++.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G--~~Vvv~D~~~~~~~~~~~~ 70 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEG--AKLIVADINEEAVARAAEL 70 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHH
Confidence 468999999985 443333333323 6899999998877665543
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=85.80 E-value=3.4 Score=28.13 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=54.8
Q ss_pred EEEEEcCCc-cHHHHHHHHHhCCCCeEE-EEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028002 71 HALDIGSGT-GYLTACFALMVGPQGRAV-GVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 71 ~vLdiG~G~-G~~~~~l~~~~~~~~~v~-~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
+|.-+|+|. |...........+..+++ .+|.++...+.+.+.+ .+. ...+..+.+.. ...|+|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~------------~~~-~~~~~~~ll~~-~~~D~V~ 67 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY------------GIP-VYTDLEELLAD-EDVDAVI 67 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------------TSE-EESSHHHHHHH-TTESEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh------------ccc-chhHHHHHHHh-hcCCEEE
Confidence 578899987 443332333333445655 5799888766654332 222 33333332222 4799998
Q ss_pred EccCCCCchHHHHHhcCCCcEEEEEeC
Q 028002 149 VGAAAPEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 149 ~~~~~~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
...+...-.+.+...|+.|--+++.=|
T Consensus 68 I~tp~~~h~~~~~~~l~~g~~v~~EKP 94 (120)
T PF01408_consen 68 IATPPSSHAEIAKKALEAGKHVLVEKP 94 (120)
T ss_dssp EESSGGGHHHHHHHHHHTTSEEEEESS
T ss_pred EecCCcchHHHHHHHHHcCCEEEEEcC
Confidence 887776666777788888877777543
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.79 E-value=0.7 Score=36.97 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=30.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHH
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 106 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~ 106 (215)
.-.+.+|||+|||+|...+.+... +. ..+...|.+...+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~-~~-~~~~fqD~na~vl 152 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVK-GA-VSVHFQDFNAEVL 152 (282)
T ss_pred EecCceeEecCCcccccchhhhhh-cc-ceeeeEecchhhe
Confidence 345789999999999888888765 33 5788888877766
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=85.64 E-value=7.9 Score=31.76 Aligned_cols=97 Identities=9% Similarity=0.013 Sum_probs=50.5
Q ss_pred EEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeEEE
Q 028002 71 HALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 71 ~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
+||-+|||. |...+....+.|. ++++.+|.+. ...+.+++++.+... .-+++..
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp-----~v~V~~~ 74 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNP-----NVKIVAY 74 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCC-----CCeEEEE
Confidence 478899985 6444433334465 7888888543 223444555544321 1345555
Q ss_pred eCCCCCCCC---CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 131 VGDGRKGWP---EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 131 ~~d~~~~~~---~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+..+... -...||+|+....-......+.+.....+.-++.
T Consensus 75 ~~~i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~ 120 (312)
T cd01489 75 HANIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIE 120 (312)
T ss_pred eccCCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEE
Confidence 555543211 1147999988876544333333443334443443
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=85.58 E-value=5.2 Score=33.66 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=44.9
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+|+-+|||. |......+.+.|. ++++.+|.+. ...+.+++++....- .-+++
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gv-g~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np-----~v~i~ 114 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGV-GTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQP-----DIRVN 114 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCC-----CCeeE
Confidence 57899999996 6655555444455 7899988662 234555555554321 12344
Q ss_pred EEeCCCCCCCC--CCCCccEEEEccCC
Q 028002 129 VHVGDGRKGWP--EFAPYDAIHVGAAA 153 (215)
Q Consensus 129 ~~~~d~~~~~~--~~~~~D~V~~~~~~ 153 (215)
.....+..... -...+|+|+....-
T Consensus 115 ~~~~~i~~~~~~~~~~~~DlVid~~Dn 141 (370)
T PRK05600 115 ALRERLTAENAVELLNGVDLVLDGSDS 141 (370)
T ss_pred EeeeecCHHHHHHHHhCCCEEEECCCC
Confidence 44333322111 11469999876654
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=85.57 E-value=1.7 Score=36.54 Aligned_cols=115 Identities=22% Similarity=0.239 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH-------hhcccCcccC
Q 028002 52 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE-------KSAAAPLLKE 124 (215)
Q Consensus 52 ~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~-------~~~~~~~~~~ 124 (215)
+..+..+.+.+. +.+++...|+|+|.|.+...++...+. .+-+|+++....-+.+..+.. ..+. ..
T Consensus 178 ~~ql~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~-k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk----~~ 250 (419)
T KOG3924|consen 178 LEQLRSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGC-KKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK----KP 250 (419)
T ss_pred HHHHHHHHHHhc--cCCCCcccCCCcccchhhHHHHHhhcc-ccccceeeecCcHHHHHHHHHHHHHHHHHhCC----Cc
Confidence 334555666666 888999999999999999888877543 567888877655444433222 2222 12
Q ss_pred CCeEEEeCCCCCCCC---CCCCccEEEEccCCC--Cc---hHHHHHhcCCCcEEEEE
Q 028002 125 GSLSVHVGDGRKGWP---EFAPYDAIHVGAAAP--EI---PQALIDQLKPGGRMVIP 173 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~---~~~~~D~V~~~~~~~--~~---~~~~~~~Lk~gG~lv~~ 173 (215)
..+..+++++...-. -....++|+++...- ++ .+++..-+++|-+++-+
T Consensus 251 ~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 251 NKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred CceeecccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecc
Confidence 456667776654211 013567887776431 11 13678888999888764
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.57 E-value=14 Score=33.85 Aligned_cols=79 Identities=10% Similarity=-0.072 Sum_probs=45.7
Q ss_pred CCEEEEEcCC-ccHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028002 69 GMHALDIGSG-TGYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
+.+|+-+||| .|+.......+.|- ++++.+|.+. .-++.+++++.... +.-+++
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GV-G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~in-----P~~~I~ 116 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGI-GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSIN-----PFLEIT 116 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCC-CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhC-----CCCeEE
Confidence 5799999999 57655555444466 7888888443 22344455544432 123555
Q ss_pred EEeCCCCCCCC--CCCCccEEEEccCC
Q 028002 129 VHVGDGRKGWP--EFAPYDAIHVGAAA 153 (215)
Q Consensus 129 ~~~~d~~~~~~--~~~~~D~V~~~~~~ 153 (215)
.....+..... -...+|+|+...+.
T Consensus 117 ~~~~~i~~~n~~~~l~~~DvVid~~D~ 143 (679)
T PRK14851 117 PFPAGINADNMDAFLDGVDVVLDGLDF 143 (679)
T ss_pred EEecCCChHHHHHHHhCCCEEEECCCC
Confidence 55555543211 01469999866654
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.55 E-value=5.6 Score=32.35 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=48.4
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 70 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 70 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
.+|.-+|+|. |. ++..+.+. +...+|+++|.++...+.+++ .+. ......+.... ....|+|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~~~~~~a~~----~g~--------~~~~~~~~~~~---~~~aDvV 70 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSAETRARARE----LGL--------GDRVTTSAAEA---VKGADLV 70 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCHHHHHHHHh----CCC--------CceecCCHHHH---hcCCCEE
Confidence 5789999886 43 33333333 332479999999887665542 111 11111111111 1457998
Q ss_pred EEccCCCC---chHHHHHhcCCCcEEEE
Q 028002 148 HVGAAAPE---IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 148 ~~~~~~~~---~~~~~~~~Lk~gG~lv~ 172 (215)
+...+... +.+.+...+++++.++.
T Consensus 71 iiavp~~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 71 ILCVPVGASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred EECCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence 87776543 33455567788775543
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=85.38 E-value=1 Score=35.12 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=14.8
Q ss_pred hHHHHHhcCCCcEEEEEeC
Q 028002 157 PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 157 ~~~~~~~Lk~gG~lv~~~~ 175 (215)
..++.++|||||.+++.+.
T Consensus 55 l~E~~RVLKpgg~l~if~~ 73 (227)
T PRK13699 55 CNEMYRVLKKDALMVSFYG 73 (227)
T ss_pred HHHHHHHcCCCCEEEEEec
Confidence 3577899999999987543
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=85.33 E-value=3.8 Score=30.64 Aligned_cols=97 Identities=21% Similarity=0.203 Sum_probs=50.7
Q ss_pred EEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcc----cCccc-------CCCeEEEeCCCCCC
Q 028002 71 HALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA----APLLK-------EGSLSVHVGDGRKG 137 (215)
Q Consensus 71 ~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~-------~~~v~~~~~d~~~~ 137 (215)
+|--+|+|+ |. ++..++.. | .+|+.+|.+++.++.+++++...-. ...+. ..++.+ ..|....
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~ 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-G--YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-T--SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG
T ss_pred CEEEEcCCHHHHHHHHHHHhC-C--CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH
Confidence 467899998 53 33344444 3 7999999999999888877765110 00000 123332 2232222
Q ss_pred CCCCCCccEEEEccCC-----CCchHHHHHhcCCCcEEEEEeC
Q 028002 138 WPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~-----~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
...|+|+-..+- ..++.++.+.+.|+-.|...+.
T Consensus 77 ----~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 77 ----VDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp ----CTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred ----hhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence 257888766432 1244556667777777666543
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=85.32 E-value=17 Score=28.91 Aligned_cols=88 Identities=23% Similarity=0.315 Sum_probs=57.7
Q ss_pred CCCEEEEEcCC--ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 68 PGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
++.+|+-.|++ .|..+..+++..| .++++++.++...+.+++ + +. ... +.... . ... +.+|
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~------~~~-~~~~~--~-~~~-~~~d 194 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAG--AHVVAVVGSPARAEGLRE-L---GA------AEV-VVGGS--E-LSG-APVD 194 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-c---CC------cEE-Eeccc--c-ccC-CCce
Confidence 48899999883 3777777888765 578888888877776654 2 21 111 11100 1 112 4689
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 146 AIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+++....- .......+.|+++|.++..
T Consensus 195 ~vl~~~g~-~~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 195 LVVDSVGG-PQLARALELLAPGGTVVSV 221 (305)
T ss_pred EEEECCCc-HHHHHHHHHhcCCCEEEEE
Confidence 99876543 3567789999999998865
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=85.17 E-value=7.3 Score=33.45 Aligned_cols=98 Identities=10% Similarity=0.029 Sum_probs=52.0
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+||-+|||. |...+.-+-+.|- ++++.+|.+. ...+.+.+++.+..- .-+++
T Consensus 20 ~s~VlliG~gglGsEilKNLvL~GI-g~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp-----~V~i~ 93 (425)
T cd01493 20 SAHVCLLNATATGTEILKNLVLPGI-GSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNP-----DVNGS 93 (425)
T ss_pred hCeEEEEcCcHHHHHHHHHHHHcCC-CeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCC-----CCEEE
Confidence 57899999985 5433333333344 6888888552 223445555555431 13445
Q ss_pred EEeCCCCCCCCC----CCCccEEEEccCCCCchHHHHHhcCCCcEEEE
Q 028002 129 VHVGDGRKGWPE----FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 129 ~~~~d~~~~~~~----~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~ 172 (215)
++..+....... ...||+|++..........+.+.++..|.-++
T Consensus 94 ~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI 141 (425)
T cd01493 94 AVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLL 141 (425)
T ss_pred EEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 555444321110 14789998876544333345455555554444
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=84.99 E-value=4.3 Score=33.19 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=52.8
Q ss_pred CCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 68 PGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
++.+|+-.|. | .|.....+++..| .+++++..+ ...+.+++ .+.. ..+.....+..........+|
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~-~~~~~~~~----~g~~-----~~~~~~~~~~~~~l~~~~~vd 229 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWG--AHVTTTCST-DAIPLVKS----LGAD-----DVIDYNNEDFEEELTERGKFD 229 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCc-chHHHHHH----hCCc-----eEEECCChhHHHHHHhcCCCC
Confidence 3889998883 4 3777777888876 457776643 33332222 2211 011110001111111124689
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 146 AIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+++...... ....+.+.|+++|.++..
T Consensus 230 ~vi~~~g~~-~~~~~~~~l~~~G~~v~~ 256 (350)
T cd08248 230 VILDTVGGD-TEKWALKLLKKGGTYVTL 256 (350)
T ss_pred EEEECCChH-HHHHHHHHhccCCEEEEe
Confidence 999765544 667789999999999875
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=84.83 E-value=13 Score=32.96 Aligned_cols=92 Identities=16% Similarity=0.072 Sum_probs=55.4
Q ss_pred CEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCCCCc
Q 028002 70 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAPY 144 (215)
Q Consensus 70 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~ 144 (215)
.+++-+|||. |.......+..+ ..++.+|.+++.++.+++ .....+.+|..+.. ..-+.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g--~~vvvId~d~~~~~~~~~-------------~g~~~i~GD~~~~~~L~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG--IPLVVIETSRTRVDELRE-------------RGIRAVLGNAANEEIMQLAHLDCA 482 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH-------------CCCeEEEcCCCCHHHHHhcCcccc
Confidence 5788888876 544333332212 689999999998877753 35678889987631 122578
Q ss_pred cEEEEccCCCCc---hHHHHHhcCCCcEEEEEeCC
Q 028002 145 DAIHVGAAAPEI---PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~~~---~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|.+++..+-+.- .-...+...|...++.-..+
T Consensus 483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~ 517 (558)
T PRK10669 483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIARAHY 517 (558)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 877654333211 11234555677777765443
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=84.80 E-value=12 Score=26.68 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHh---CCCCeEEEEecChHHHHHHHHHH
Q 028002 67 KPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~ 113 (215)
..+.+|+-+|+|. .+..+++.+ + ...++.+|.++...+...+.+
T Consensus 17 ~~~~~i~iiG~G~--~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 17 LKGKKVLILGAGG--AARAVAYALAELG-AAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCCCEEEEECCcH--HHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHH
Confidence 3467899999874 333333222 2 257999999887766554443
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.67 E-value=7.4 Score=35.53 Aligned_cols=76 Identities=14% Similarity=0.027 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-------
Q 028002 68 PGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------- 139 (215)
++.++|-.|++. .++..+++.+. ...+|++++.++...+.+.+.+... .++.++..|..+...
T Consensus 421 ~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--------~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 421 AGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--------DRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--------CcEEEEEecCCCHHHHHHHHHH
Confidence 457888888643 33333333321 1258999999987766655443321 256777777764210
Q ss_pred ---CCCCccEEEEccC
Q 028002 140 ---EFAPYDAIHVGAA 152 (215)
Q Consensus 140 ---~~~~~D~V~~~~~ 152 (215)
..+.+|+|+.+..
T Consensus 492 ~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 492 AALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1246899887765
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=84.52 E-value=9.5 Score=28.97 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=22.4
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecC
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHI 102 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s 102 (215)
+.+|+-+|||. |........+.|. ++++.+|.+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GV-g~i~lvD~d 52 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGI-DSITIVDHR 52 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEECC
Confidence 57899999996 5544444334355 678888855
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO | Back alignment and domain information |
|---|
Probab=84.47 E-value=4.9 Score=29.48 Aligned_cols=102 Identities=21% Similarity=0.187 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHH-HHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTA-CFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
.+.+.+......+.+|.-.|+|....+. ..+.. +++.-...+|.++.- .+.. .+...+-++..+..
T Consensus 56 ~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~-~~~~I~~vvD~np~K----------~G~~--~PGt~ipI~~p~~l 122 (160)
T PF08484_consen 56 ELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGL-DNDLIDYVVDDNPLK----------QGKY--LPGTHIPIVSPEEL 122 (160)
T ss_dssp HHHHHHHHHHHTT--EEEE---SHHHHHHHHHT---TTTS--EEES-GGG----------TTEE---TTT--EEEEGGG-
T ss_pred HHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCC-CcceeEEEEeCChhh----------cCcc--cCCCCCeECCHHHH
Confidence 3444443234567899999999965543 33322 222345677877642 1111 11123444443322
Q ss_pred CCCCCCCCccEEEEccCC--CCchHHHHHhcCCCcEEEEEeC
Q 028002 136 KGWPEFAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~--~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
. . ...|.|+..+.. +++.+.+...++.||.+++++|
T Consensus 123 ~---~-~~pd~vivlaw~y~~EI~~~~~~~~~~gg~fi~plP 160 (160)
T PF08484_consen 123 K---E-RKPDYVIVLAWNYKDEIIEKLREYLERGGKFIVPLP 160 (160)
T ss_dssp ----S-S--SEEEES-GGGHHHHHHHTHHHHHTT-EEEE-SS
T ss_pred h---h-CCCCEEEEcChhhHHHHHHHHHHHHhcCCEEEEeCC
Confidence 2 1 456877654322 3355566778889999999875
|
; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=84.44 E-value=4.4 Score=31.84 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=24.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP 103 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~ 103 (215)
+.+|+-+|||. |......+.+.|- ++++.+|.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence 47899999996 7665555555455 6788887554
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=84.25 E-value=19 Score=28.95 Aligned_cols=97 Identities=23% Similarity=0.200 Sum_probs=59.8
Q ss_pred CCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028002 66 LKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
..++.+||-.|+ | .|..+..+++..| .++++++.++...+.+++ .+.. .-+.....+... ....
T Consensus 140 ~~~~~~vlI~g~~~~~g~~~~~la~~~g--~~v~~~~~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~~~~~~~~ 208 (324)
T cd08244 140 LTPGDVVLVTAAAGGLGSLLVQLAKAAG--ATVVGAAGGPAKTALVRA----LGAD-----VAVDYTRPDWPDQVREALG 208 (324)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCC-----EEEecCCccHHHHHHHHcC
Confidence 567889999884 3 4778888888876 578999988887766633 2211 001100001100 0112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
...+|+|+....-. ......+.|+++|.++...
T Consensus 209 ~~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~~g 241 (324)
T cd08244 209 GGGVTVVLDGVGGA-IGRAALALLAPGGRFLTYG 241 (324)
T ss_pred CCCceEEEECCChH-hHHHHHHHhccCcEEEEEe
Confidence 24699998765544 3477889999999988653
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=84.14 E-value=12 Score=29.92 Aligned_cols=96 Identities=22% Similarity=0.219 Sum_probs=59.0
Q ss_pred cCCCCCEEEEEcCC--ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC---CC
Q 028002 65 NLKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~ 139 (215)
++++|++||--.+. .|.+...+++..+ ..+++.-.+.+-.+.++++ +.. ..+.....|..+. ..
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~~--a~tI~~asTaeK~~~aken----G~~-----h~I~y~~eD~v~~V~kiT 211 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAVG--AHTIATASTAEKHEIAKEN----GAE-----HPIDYSTEDYVDEVKKIT 211 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhcC--cEEEEEeccHHHHHHHHhc----CCc-----ceeeccchhHHHHHHhcc
Confidence 58899988765443 3667777777764 5666666666666666653 332 3344444444321 11
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~ 172 (215)
.....|+++..-.... .+.-...||++|.++-
T Consensus 212 ngKGVd~vyDsvG~dt-~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 212 NGKGVDAVYDSVGKDT-FAKSLAALKPMGKMVS 243 (336)
T ss_pred CCCCceeeeccccchh-hHHHHHHhccCceEEE
Confidence 2245788876655543 4556789999999875
|
|
| >cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=83.97 E-value=12 Score=30.30 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=55.9
Q ss_pred CCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028002 66 LKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
..++.+|+-.|+ | .|..+..+++..| .+++++.. +...+.+++ + +. ..+.....+........+.
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~v~~~~~-~~~~~~~~~-~---g~------~~~~~~~~~~~~~~~~~~~ 203 (331)
T cd08273 137 VLTGQRVLIHGASGGVGQALLELALLAG--AEVYGTAS-ERNHAALRE-L---GA------TPIDYRTKDWLPAMLTPGG 203 (331)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeC-HHHHHHHHH-c---CC------eEEcCCCcchhhhhccCCC
Confidence 677889999986 3 3677777887765 56787775 655555532 2 21 0010000011110011146
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+|+....-.. .....+.++++|.++...
T Consensus 204 ~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g 233 (331)
T cd08273 204 VDVVFDGVGGES-YEESYAALAPGGTLVCYG 233 (331)
T ss_pred ceEEEECCchHH-HHHHHHHhcCCCEEEEEc
Confidence 899986655443 667789999999988643
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.90 E-value=6.1 Score=31.83 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=28.5
Q ss_pred CEEEEEcCCc--cHHHHHHHHHhCCCCeEEEEecChHHHHHHH
Q 028002 70 MHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSI 110 (215)
Q Consensus 70 ~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~ 110 (215)
.+|+-+|.|- |+++..+... |....+++.|.+....+.+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~-g~~v~i~g~d~~~~~~~~a~ 45 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA-GLVVRIIGRDRSAATLKAAL 45 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc-CCeEEEEeecCcHHHHHHHh
Confidence 5788899886 4555555555 56567889998887776664
|
|
| >cd08252 AL_MDR Arginate lyase and other MDR family members | Back alignment and domain information |
|---|
Probab=83.55 E-value=20 Score=29.05 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=58.6
Q ss_pred CCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC-C-CCCCCCc
Q 028002 69 GMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-G-WPEFAPY 144 (215)
Q Consensus 69 ~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~~ 144 (215)
+.+|+-.|+ | .|.....+++..|. .++++++.++...+.+++ + +.. .+--...+... . ......+
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~---g~~------~~~~~~~~~~~~i~~~~~~~~ 218 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTG-LTVIATASRPESIAWVKE-L---GAD------HVINHHQDLAEQLEALGIEPV 218 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCC-cEEEEEcCChhhHHHHHh-c---CCc------EEEeCCccHHHHHHhhCCCCC
Confidence 789999985 3 37777788888652 578999888877776643 2 211 11000001100 0 0112468
Q ss_pred cEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 145 DAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
|+++...........+.+.++++|.++..
T Consensus 219 d~vl~~~~~~~~~~~~~~~l~~~g~~v~~ 247 (336)
T cd08252 219 DYIFCLTDTDQHWDAMAELIAPQGHICLI 247 (336)
T ss_pred CEEEEccCcHHHHHHHHHHhcCCCEEEEe
Confidence 99987655445678889999999998864
|
This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=83.50 E-value=10 Score=30.69 Aligned_cols=79 Identities=11% Similarity=-0.044 Sum_probs=43.8
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+|+-+|||. |......+.+.|- ++++.+|.+. .-.+.+++++.+..- .-+++
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGV-G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP-----~v~V~ 100 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGI-GKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINP-----ELEIR 100 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC-CeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCC-----CCEEE
Confidence 57999999995 6654444434365 6888888553 224445555554321 12444
Q ss_pred EEeCCCCCCCC--CCCCccEEEEccCC
Q 028002 129 VHVGDGRKGWP--EFAPYDAIHVGAAA 153 (215)
Q Consensus 129 ~~~~d~~~~~~--~~~~~D~V~~~~~~ 153 (215)
.....+..... -...||+|+...+.
T Consensus 101 ~~~~~l~~~n~~~ll~~~DlVvD~~D~ 127 (287)
T PRK08223 101 AFPEGIGKENADAFLDGVDVYVDGLDF 127 (287)
T ss_pred EEecccCccCHHHHHhCCCEEEECCCC
Confidence 44443332111 01469999855543
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.44 E-value=6.8 Score=33.76 Aligned_cols=106 Identities=16% Similarity=0.077 Sum_probs=61.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE-EEeCCCCCCCCCCCCccE
Q 028002 69 GMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS-VHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~D~ 146 (215)
...+.|+|+|.|.-.-.+....+ ....++.||.+..+.....+++.. +.. +...-+. ++.-+..........||+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~--~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSH--IGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhh--cCchhccccchhcccCCCCcccceee
Confidence 35788898887643333322222 246899999999999988877754 110 0000000 011111111122246999
Q ss_pred EEEccCCCCch----------HHHHHhcCCCcEEEEEeCCC
Q 028002 147 IHVGAAAPEIP----------QALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 147 V~~~~~~~~~~----------~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|++...+.++. .-..+..++||.+++.-...
T Consensus 278 vi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 278 VICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred EEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 99988775533 23567788999998865543
|
|
| >cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=83.44 E-value=11 Score=30.38 Aligned_cols=96 Identities=21% Similarity=0.217 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEec--ChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEH--IPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 139 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~--s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~ 139 (215)
+.++.+||-.|+|. |..+..+++..| .+++.+.. +....+.+++ .+.. .+.....+... ...
T Consensus 162 ~~~g~~vlI~g~g~~g~~~~~la~~~G--~~v~~~~~~~~~~~~~~~~~----~g~~------~~~~~~~~~~~~l~~~~ 229 (306)
T cd08258 162 IRPGDTVVVFGPGPIGLLAAQVAKLQG--ATVVVVGTEKDEVRLDVAKE----LGAD------AVNGGEEDLAELVNEIT 229 (306)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHH----hCCc------ccCCCcCCHHHHHHHHc
Confidence 56778888877654 667777787765 45666533 3333333332 2211 11001111100 011
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
....+|+++.............+.|+++|.++..
T Consensus 230 ~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~ 263 (306)
T cd08258 230 DGDGADVVIECSGAVPALEQALELLRKGGRIVQV 263 (306)
T ss_pred CCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 2246899987754445667788999999998864
|
This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=83.44 E-value=17 Score=29.71 Aligned_cols=94 Identities=20% Similarity=0.165 Sum_probs=52.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.....+|+-+|||. |...........+..+++..+.+++..+...+.+...+ ..+.. ..+..+.. ...
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g-------~~~~~-~~~~~~av---~~a 190 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG-------FDAEV-VTDLEAAV---RQA 190 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC-------CceEE-eCCHHHHH---hcC
Confidence 34467999999997 55554332332344789999999887666655554321 12222 12221111 458
Q ss_pred cEEEEccCCCC-chHHHHHhcCCCcEEEE
Q 028002 145 DAIHVGAAAPE-IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 145 D~V~~~~~~~~-~~~~~~~~Lk~gG~lv~ 172 (215)
|+|++..+... ++. ...++||-.+..
T Consensus 191 DIVi~aT~s~~pvl~--~~~l~~g~~i~~ 217 (314)
T PRK06141 191 DIISCATLSTEPLVR--GEWLKPGTHLDL 217 (314)
T ss_pred CEEEEeeCCCCCEec--HHHcCCCCEEEe
Confidence 98876655432 222 256788774433
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=83.43 E-value=6.5 Score=35.53 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=58.3
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCCCC
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAP 143 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~ 143 (215)
..+|+-+|+|. |.........-+ ..++.+|.|++.++.+++ ....++.+|..+.. ..-+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~-------------~g~~v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG--VKMTVLDHDPDHIETLRK-------------FGMKVFYGDATRMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHh-------------cCCeEEEEeCCCHHHHHhcCCCc
Confidence 36888898886 655444433322 589999999999888764 24568888887631 12257
Q ss_pred ccEEEEccCCCCchH---HHHHhcCCCcEEEEEeCC
Q 028002 144 YDAIHVGAAAPEIPQ---ALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~---~~~~~Lk~gG~lv~~~~~ 176 (215)
.|.+++...-++... ...+.+.|+-.++.-..+
T Consensus 465 A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d 500 (621)
T PRK03562 465 AEVLINAIDDPQTSLQLVELVKEHFPHLQIIARARD 500 (621)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 888876665433221 234555677666654433
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.79 E-value=2.4 Score=34.01 Aligned_cols=98 Identities=20% Similarity=0.165 Sum_probs=54.5
Q ss_pred EEEEEcCCc-c-HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh-------cccCcc----cCCCeEEEeCCCCCC
Q 028002 71 HALDIGSGT-G-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-------AAAPLL----KEGSLSVHVGDGRKG 137 (215)
Q Consensus 71 ~vLdiG~G~-G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~~~~~----~~~~v~~~~~d~~~~ 137 (215)
+|--+|+|. | .++..+++. | .+|+++|.+++.++.+++++... +....- ...++.+. .|..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~-- 78 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-G--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLD-- 78 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-C--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH--
Confidence 578899986 3 444455544 3 58999999999987665443321 100000 00122211 2211
Q ss_pred CCCCCCccEEEEccCC-----CCchHHHHHhcCCCcEEEEEeCC
Q 028002 138 WPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~-----~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.....|+|+...+- ..++.++.+.++++..+...+..
T Consensus 79 --~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 79 --DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred --HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 12467988776542 24556677888888777544443
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=82.75 E-value=19 Score=27.44 Aligned_cols=89 Identities=9% Similarity=0.122 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCc-cHHH-HHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 68 PGMHALDIGSGT-GYLT-ACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~-~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
.+.+||-+|+|. |... ..+.+. | .+++.++.+. .+...+.... ..+.+........ ....+|
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~-g--a~V~VIs~~~--~~~l~~l~~~---------~~i~~~~~~~~~~--~l~~ad 72 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY-G--AHIVVISPEL--TENLVKLVEE---------GKIRWKQKEFEPS--DIVDAF 72 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C--CeEEEEcCCC--CHHHHHHHhC---------CCEEEEecCCChh--hcCCce
Confidence 467999999986 4332 234443 3 6788886432 1122222211 2455554433322 125689
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 146 AIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|++....+.+-..+....+.+ .++-.
T Consensus 73 lViaaT~d~elN~~i~~~a~~~-~lvn~ 99 (202)
T PRK06718 73 LVIAATNDPRVNEQVKEDLPEN-ALFNV 99 (202)
T ss_pred EEEEcCCCHHHHHHHHHHHHhC-CcEEE
Confidence 9999888777766666666554 44433
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=82.64 E-value=12 Score=29.49 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=27.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChH
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPE 104 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~ 104 (215)
..+|+.+|+|. |+.+..++.+.|- ++++.+|.+.-
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGi-g~itlID~D~v 65 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGI-GRITLIDMDDV 65 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCC-CeEEEEecccc
Confidence 57899999997 8877777666555 78999997763
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=82.54 E-value=8 Score=32.78 Aligned_cols=34 Identities=29% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP 103 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~ 103 (215)
..+||-+|||. |......+.+.|. ++++.+|.+.
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gv-g~i~lvD~D~ 76 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGV-GTLGIVEFDV 76 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCE
Confidence 57899999997 6655544444465 6888888543
|
|
| >TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=82.45 E-value=13 Score=30.12 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=56.6
Q ss_pred CCEEEEEcC--CccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCC
Q 028002 69 GMHALDIGS--GTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 143 (215)
Q Consensus 69 ~~~vLdiG~--G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 143 (215)
+.+||-.|+ +.|..+..+++.. | .+++++..++...+.+++ + +. +.+--...+..... .....
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G--~~vi~~~~~~~~~~~l~~-~---g~------~~~~~~~~~~~~~i~~~~~~~ 216 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTG--LTVIATASRPESQEWVLE-L---GA------HHVIDHSKPLKAQLEKLGLEA 216 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCC--CEEEEEcCcHHHHHHHHH-c---CC------CEEEECCCCHHHHHHHhcCCC
Confidence 789998885 3477777888875 4 578998887776666643 2 21 11100000110000 11246
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+|+.............+.|+++|.++..
T Consensus 217 vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 217 VSYVFSLTHTDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred CCEEEEcCCcHHHHHHHHHHhccCCEEEEE
Confidence 999986543345567889999999999864
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. |
| >TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family | Back alignment and domain information |
|---|
Probab=82.34 E-value=4.5 Score=32.68 Aligned_cols=93 Identities=19% Similarity=0.159 Sum_probs=56.0
Q ss_pred CCCCC-EEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC---CCCC
Q 028002 66 LKPGM-HALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR---KGWP 139 (215)
Q Consensus 66 ~~~~~-~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~---~~~~ 139 (215)
..++. +||-.|+ |. |..+..+++..| .+++.+..++...+.+++ .+.. .+ +...+.. ....
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G--~~vi~~~~~~~~~~~~~~----~g~~------~~-~~~~~~~~~~~~~~ 208 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLG--YEVVASTGKAEEEDYLKE----LGAS------EV-IDREDLSPPGKPLE 208 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHh----cCCc------EE-EccccHHHHHHHhc
Confidence 56677 9999997 44 778888888876 467777666665555532 2211 11 0000100 0111
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
. +.+|+|+....-. ....+.+.|+++|.++..
T Consensus 209 ~-~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~ 240 (323)
T TIGR02823 209 K-ERWAGAVDTVGGH-TLANVLAQLKYGGAVAAC 240 (323)
T ss_pred C-CCceEEEECccHH-HHHHHHHHhCCCCEEEEE
Confidence 1 3489887765533 467788999999998874
|
This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc. |
| >cd05195 enoyl_red enoyl reductase of polyketide synthase | Back alignment and domain information |
|---|
Probab=82.33 E-value=4.6 Score=31.55 Aligned_cols=99 Identities=16% Similarity=0.004 Sum_probs=58.7
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCC
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~ 139 (215)
.++++.+|+-.|+ | .|..+..+++..| .++++++.++...+.+++... ... ..+.....+... ...
T Consensus 105 ~~~~g~~vlv~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~ 175 (293)
T cd05195 105 RLQKGESVLIHAAAGGVGQAAIQLAQHLG--AEVFATVGSEEKREFLRELGG--PVD-----HIFSSRDLSFADGILRAT 175 (293)
T ss_pred ccCCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhCC--Ccc-----eEeecCchhHHHHHHHHh
Confidence 3678889998864 3 3777777888765 578888887776666654210 000 011100001100 011
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
....+|+++....-. ......+.++++|.++..
T Consensus 176 ~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~ 208 (293)
T cd05195 176 GGRGVDVVLNSLSGE-LLRASWRCLAPFGRFVEI 208 (293)
T ss_pred CCCCceEEEeCCCch-HHHHHHHhcccCceEEEe
Confidence 124689888655443 667888999999998864
|
Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=82.31 E-value=7.8 Score=32.09 Aligned_cols=88 Identities=11% Similarity=-0.063 Sum_probs=41.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHh--------C-------CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe--E
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMV--------G-------PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL--S 128 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~--------~-------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v--~ 128 (215)
.....+|+|+||.+|..+..+.... . |.-+|+--|.-.+-....-+.+...... .....++ .
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~-~~~~~~~f~~ 92 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQS-LKKFRNYFVS 92 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHH-HHHTTSEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhc-cCCCceEEEE
Confidence 3444689999999999888654321 0 1137777786654333332222221000 0000222 3
Q ss_pred EEeCCCCCCCCCCCCccEEEEccCCC
Q 028002 129 VHVGDGRKGWPEFAPYDAIHVGAAAP 154 (215)
Q Consensus 129 ~~~~d~~~~~~~~~~~D~V~~~~~~~ 154 (215)
-+.+.+...+.+.++.|++++...+|
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alH 118 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALH 118 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TT
T ss_pred ecCchhhhccCCCCceEEEEEechhh
Confidence 34566666555558899998777553
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 215 | ||||
| 1i1n_A | 226 | Human Protein L-Isoaspartate O-Methyltransferase Wi | 5e-56 | ||
| 1r18_A | 227 | Drosophila Protein Isoaspartyl Methyltransferase Wi | 7e-45 | ||
| 2yxe_A | 215 | Crystal Structure Of L-Isoaspartyl Protein Carboxyl | 4e-33 | ||
| 1jg4_A | 235 | Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- | 4e-31 | ||
| 2pbf_A | 227 | Crystal Structure Of A Putative Protein-L-Isoaspart | 3e-30 | ||
| 3lbf_A | 210 | Crystal Structure Of Protein L-Isoaspartyl Methyltr | 1e-21 | ||
| 1dl5_A | 317 | Protein-L-Isoaspartate O-Methyltransferase Length = | 4e-17 | ||
| 1vbf_A | 231 | Crystal Structure Of Protein L-Isoaspartate O-Methy | 2e-12 | ||
| 3cjt_A | 254 | Ribosomal Protein L11 Methyltransferase (prma) In C | 3e-05 | ||
| 1ufk_A | 254 | Crystal Structure Of Tt0836 Length = 254 | 4e-05 |
| >pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S- Adenosyl Homocysteine Length = 226 | Back alignment and structure |
|
| >pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With S-Adenosyl-L- Homocysteine Length = 227 | Back alignment and structure |
|
| >pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl Methyltranferase Length = 215 | Back alignment and structure |
|
| >pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O- Methyltransferase With S-Adenosylmethionine Length = 235 | Back alignment and structure |
|
| >pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O- Methyltransferase Beta-Aspartate Methyltransferase (Pcmt) From Plasmodium Falciparum In Complex With S-Adenosyl-L-Homocysteine Length = 227 | Back alignment and structure |
|
| >pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl Methyltransferase From Escherichia Coli Length = 210 | Back alignment and structure |
|
| >pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase Length = 317 | Back alignment and structure |
|
| >pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate O-Methyltransferase Homologue From Sulfolobus Tokodaii Length = 231 | Back alignment and structure |
|
| >pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex With Dimethylated Ribosomal Protein L11 Length = 254 | Back alignment and structure |
|
| >pdb|1UFK|A Chain A, Crystal Structure Of Tt0836 Length = 254 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226 | Back alignment and structure |
|---|
Score = 317 bits (814), Expect = e-111
Identities = 113/217 (52%), Positives = 146/217 (67%), Gaps = 5/217 (2%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ ATISAPHMHA L+
Sbjct: 12 LIHNLRKNGIIKTDKVFEVMLATDRSHYAKCN--PYMDSPQSIGFQATISAPHMHAYALE 69
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV S+ N+ K
Sbjct: 70 LLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK-DDPT 128
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF-- 178
LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG
Sbjct: 129 LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 188
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 189 QMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRW 225
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227 | Back alignment and structure |
|---|
Score = 301 bits (772), Expect = e-105
Identities = 96/212 (45%), Positives = 130/212 (61%), Gaps = 10/212 (4%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ L+ +GVI S V++ M+ DR + P PY+D+P IG TISAPHMHA L+
Sbjct: 19 LIRQLKDHGVIASDAVAQAMKETDRKHYSPRN--PYMDAPQPIGGGVTISAPHMHAFALE 76
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-----RAVGVEHIPELVVSSIQNIEK 115
L ++LKPG LD+GSG+GYLTACF + +G R VG+EH ELV S N+
Sbjct: 77 YLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNT 136
Query: 116 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 175
+L G L + GDGRKG+P APY+AIHVGAAAP+ P LI+QL GGR+++PVG
Sbjct: 137 -DDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVG 195
Query: 176 NI--FQDLKVVDKNQDGSLSIWSETSVRYVPL 205
Q ++ DK+ +G + + V YVPL
Sbjct: 196 PDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 227
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227 | Back alignment and structure |
|---|
Score = 282 bits (725), Expect = 7e-98
Identities = 73/214 (34%), Positives = 118/214 (55%), Gaps = 13/214 (6%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++E+L+ G+I V M +DR ++ + PY+D+P+ I + TISAPHMHA L+
Sbjct: 15 LLENLKRRGIIDDDDVYNTMLQVDRGKYIKEI--PYIDTPVYISHGVTISAPHMHALSLK 72
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFAL----MVGPQGRAVGVEHIPELVVSSIQNIEKS 116
L LKPG A+D+GSG+GYLT C A+ + +G+E + +LV S++NI++
Sbjct: 73 RLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRD 132
Query: 117 AAAPLLKEGSLSVHVGD----GRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 172
LLK + + + + E +DAIHVGA+A E+P+ L+D L G+++I
Sbjct: 133 KPE-LLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILVDLLAENGKLII 191
Query: 173 PVGNIF-QDLKVVDKNQDGSLSIWSETSVRYVPL 205
P+ + Q L + K +G + V +V L
Sbjct: 192 PIEEDYTQVLYEITKK-NGKIIKDRLFDVCFVSL 224
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215 | Back alignment and structure |
|---|
Score = 281 bits (722), Expect = 1e-97
Identities = 83/212 (39%), Positives = 118/212 (55%), Gaps = 11/212 (5%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTP--PYVDSPMAIGYNATISAPHMHATC 58
++E L G I SK+V + + + R F+P+ YVD+P+ IGY TISA HM
Sbjct: 10 VIEKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMM 69
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
+LL+ LKPGM L+IG+G GY A A +VG G V +E IPEL + + + K
Sbjct: 70 CELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK--- 124
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF 178
L ++ V VGDG G+ APYD I+ AA P+IP+ LI QLK GG++++PVG
Sbjct: 125 ---LGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPVGRYL 181
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 210
Q L + +K D + V +VPL ++
Sbjct: 182 QRLVLAEKRGDEIIIKDCG-PVAFVPLVGKEG 212
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235 | Back alignment and structure |
|---|
Score = 275 bits (705), Expect = 9e-95
Identities = 81/214 (37%), Positives = 121/214 (56%), Gaps = 15/214 (7%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPP--YVDSPMAIGYNATISAPHMHATC 58
VE L+ G+I SK+V R V D ++D P+ I T+SAPHM A
Sbjct: 24 TVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIM 83
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
L++ LKPGM+ L++G+G+G+ A + +V +E IPELV + +N+E+
Sbjct: 84 LEIAN--LKPGMNILEVGTGSGWNAALISEIVKTD--VYTIERIPELVEFAKRNLER--- 136
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--N 176
++ V +GDG KG+P APYD I V A AP+IP+ LI+QLK GG+++IPVG +
Sbjct: 137 ---AGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYH 193
Query: 177 IFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 210
++Q+L V K +DG + I + V +VPL
Sbjct: 194 LWQELLEVRKTKDG-IKIKNHGGVAFVPLIGEYG 226
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 9e-83
Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 19/222 (8%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPP---YVDSPMAI----GYNATISAPH 53
+ L+ YGV S +++ I R F+ P Y D + +T S P
Sbjct: 5 LFWILKKYGV--SDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPS 62
Query: 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 113
+ A ++ + L GM L+IG GTGY A + +VG +G V VE+ ++ + +N+
Sbjct: 63 LMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV 120
Query: 114 EKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173
E+ L ++ GDG G PEF+PYD I V E+P+ QLK GGR+++P
Sbjct: 121 ER------LGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP 174
Query: 174 VGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLR 213
+ + + K +D L + R++ L
Sbjct: 175 INLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGGNLGNLL 216
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210 | Back alignment and structure |
|---|
Score = 237 bits (606), Expect = 4e-80
Identities = 74/212 (34%), Positives = 108/212 (50%), Gaps = 15/212 (7%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATC 58
+++ L+ G I ++V + + R FV + + + + IG TIS P+M A
Sbjct: 11 LLDQLRAQG-IQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARM 69
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
+LLE L P L+IG+G+GY TA A +V VE I L + + ++
Sbjct: 70 TELLE--LTPQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKN--- 121
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF 178
L ++S GDG +GW AP+DAI V AA PEIP AL+ QL GG +V+PVG
Sbjct: 122 ---LDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILVLPVGEEH 178
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 210
Q LK V + G I + +VR+VPL +
Sbjct: 179 QYLKRVRRR-GGEFIIDTVEAVRFVPLVKGEL 209
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231 | Back alignment and structure |
|---|
Score = 232 bits (595), Expect = 4e-78
Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 23/210 (10%)
Query: 11 ITSKKVSEVMETIDRACFVPDG--TPPYVDSPMA--IGYNATISAPHMHATCLQLLEENL 66
I +++++E +DR+ F+P+ Y + A I +A ++ L L+ L
Sbjct: 11 IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--L 68
Query: 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 126
G L+IG+G GY TA A +V + V VE ++ + + + +
Sbjct: 69 HKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYY--------NN 117
Query: 127 LSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG-NIFQDLKVVD 185
+ + +GDG G+ E PYD + V A AP + +QLK GG M++P+G Q L V
Sbjct: 118 IKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKVI 177
Query: 186 KNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
K + S+ + V + + G+
Sbjct: 178 KKGNS-PSLENLGEVMFGRIGGLY----GF 202
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258 | Back alignment and structure |
|---|
Score = 96.7 bits (240), Expect = 1e-24
Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 18/204 (8%)
Query: 7 HYGVITSKKV------SEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
H G + + + V + V P + + + +AT + P + +
Sbjct: 33 HKGSVPHEALLEAGPGGVVRTHLGEELSVHR--PTLEEYLLHMKRSATPTYPKDASAMVT 90
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL +L PGM L+ G+G+G LT A VG +G E P + + +N+
Sbjct: 91 LL--DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVR-----A 143
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQ 179
+ ++ H+G + E A YD + + P ++ + LKP +V + NI Q
Sbjct: 144 FWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNITQ 203
Query: 180 DLKVVDKNQDGSLS-IWS-ETSVR 201
L++V + E R
Sbjct: 204 VLELVRAAEAHPFRLERVLEVGWR 227
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336 | Back alignment and structure |
|---|
Score = 95.3 bits (236), Expect = 1e-23
Identities = 36/210 (17%), Positives = 70/210 (33%), Gaps = 16/210 (7%)
Query: 4 HLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLE 63
+ ++ + + + + P D + + I+ P L ++
Sbjct: 45 AVPFGKIVGKFPGQILRSSFGKQYMLRR--PALEDYVVLMKRGTAITFPKDINMILSMM- 101
Query: 64 ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-------S 116
++ PG L+ GSG+G ++ + VG QGR + E + + +N + S
Sbjct: 102 -DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLS 160
Query: 117 AAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVG 175
G + +DA+ + P LK GG + V
Sbjct: 161 HVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV 220
Query: 176 NIFQDLKVVD---KNQDGSLSIWS-ETSVR 201
NI Q ++++D + E VR
Sbjct: 221 NITQVIELLDGIRTCELALSCEKISEVIVR 250
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277 | Back alignment and structure |
|---|
Score = 94.3 bits (234), Expect = 1e-23
Identities = 42/204 (20%), Positives = 74/204 (36%), Gaps = 19/204 (9%)
Query: 7 HYGVITSKKV------SEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
H G+I +V + + + ++ P +D M + I P +
Sbjct: 49 HLGIIDLNEVFEKGPGEIIRTSAGKKGYIL--IPSLIDEIMNMKRRTQIVYPKDSSFIAM 106
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
+L ++K G +D G G+G + A A VG G+ E E + N+ K
Sbjct: 107 ML--DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIE 164
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQ 179
+++ V D +G+ E DA+ + P + LK GGR Q
Sbjct: 165 -----RVTIKVRDISEGFDE-KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQ 218
Query: 180 DLKVVDK-NQDGSLSIWS-ETSVR 201
+ + K + + I E+ R
Sbjct: 219 VQETLKKLQELPFIRIEVWESLFR 242
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 82.0 bits (202), Expect = 3e-19
Identities = 40/205 (19%), Positives = 74/205 (36%), Gaps = 19/205 (9%)
Query: 7 HYGVIT-----SKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQL 61
G++ + E +++ F P VD + I P A +
Sbjct: 30 DLGILKLEEIIGRNFGEAIKSHKGHEFKIL-RPRIVDYLDKMKRGPQIVHPKDAALIVAY 88
Query: 62 LEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL 121
+ PG ++ G G+G LT A +VGP+GR V E + + +NI+ +
Sbjct: 89 A--GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDD- 145
Query: 122 LKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQD 180
+++ + D +G E D + + P + + LKPGG V Q
Sbjct: 146 ----RVTIKLKDIYEGIEE-ENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPCSNQV 200
Query: 181 LKVVDKNQDGSLSI----WSETSVR 201
+++ +K ++ V
Sbjct: 201 MRLHEKLREFKDYFMKPRTINVLVF 225
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 1e-18
Identities = 28/172 (16%), Positives = 49/172 (28%), Gaps = 16/172 (9%)
Query: 33 TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP 92
+ I P L NL L+ G+G+G L A + + G
Sbjct: 60 LEEIILLGFERK--TQIIYPKDSFYIALKL--NLNKEKRVLEFGTGSGALLAVLSEVAGE 115
Query: 93 QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA 152
VE + +++ ++ D + + A V
Sbjct: 116 VWTFEAVEEFYKTAQKNLKKFNLG--------KNVKFFNVDFKDAEVPEGIFHAAFVDVR 167
Query: 153 AP-EIPQALIDQLKPGGRMV--IPVGNIFQDLKVVDKNQDGSLSIWSETSVR 201
P + + L G + +P N L +N G+L + E R
Sbjct: 168 EPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENYFGNLEVV-EILHR 218
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 70.6 bits (172), Expect = 6e-15
Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 9/172 (5%)
Query: 34 PPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ 93
P VD M++ + P A + ++ PG L+ G+G+G LT VGP
Sbjct: 67 PLLVDYVMSMPRGPQVIYPKDAAQIVHEG--DIFPGARVLEAGAGSGALTLSLLRAVGPA 124
Query: 94 GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153
G+ + E + + +N+ + + V D D + A
Sbjct: 125 GQVISYEQRADHAEHARRNVSGCYG---QPPDNWRLVVSDLADSELPDGSVDRAVLDMLA 181
Query: 154 P-EIPQALIDQLKPGGRMVIPVGNIFQDLKVVD--KNQDGSLSIWS-ETSVR 201
P E+ A+ L GG +++ V + Q ++V+ + + + ET R
Sbjct: 182 PWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETLQR 233
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 7e-15
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 58 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 117
CL + A+D+G GTG +T A R ++ PE + ++ N+++
Sbjct: 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAG---RVRRVYAIDRNPEAISTTEMNLQRHG 79
Query: 118 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA---PEIPQALIDQLKPGGRMVIP 173
++++ GD + + D VG + EI + + D+LKPGGR+++
Sbjct: 80 LGD-----NVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVT 133
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 6e-14
Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 13/201 (6%)
Query: 4 HLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLE 63
+ H G+ + + + ++ V D +P Y + I + + +
Sbjct: 50 KMHHLGISRVIEPGDELIVSGKSFIVSDFSPMYFGRVIRRN--TQIISEIDASYIIMRC- 106
Query: 64 ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 123
L+PGM L++G G+G +++ + +G VE + + ++ N+
Sbjct: 107 -GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS-----EFYD 160
Query: 124 EGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQDLK 182
G++ D + YDA+ P Q + +KPG + N Q K
Sbjct: 161 IGNVRTSRSDIADFISD-QMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEK 219
Query: 183 VVDKNQDGSLSI--WSETSVR 201
V + E R
Sbjct: 220 TVLSLSASGMHHLETVELMKR 240
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 1e-13
Identities = 25/162 (15%), Positives = 49/162 (30%), Gaps = 18/162 (11%)
Query: 26 ACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEE-NLKPGMHALDIGSGTGYLTA 84
AC + P +A + + C L G LD+G GTG
Sbjct: 43 ACKLAAAVPESHRKILADIADEVL---EKFYGCGSTLPADGSLEGATVLDLGCGTGRDVY 99
Query: 85 CFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV--------HVGDGRK 136
+ +VG G+ +GV+ + + + + +E A +V ++
Sbjct: 100 LASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP 159
Query: 137 GWPEFAPYDAIHVGAA---APEIPQALIDQ---LKPGGRMVI 172
+ D + + + L+ GG +
Sbjct: 160 EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYF 201
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 2e-13
Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
+ L + L+ + DIG+G+ ++ A + P GR +E P+ + N++K A
Sbjct: 31 VTLSKLRLQDDLVMWDIGAGSASVS-IEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA 89
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA---APEIPQALIDQLKPGGRMVIPV 174
+ ++ +G + D + +G + EI A+ +LK G +V+
Sbjct: 90 RNV------TLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNA 142
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 2e-13
Identities = 28/188 (14%), Positives = 59/188 (31%), Gaps = 22/188 (11%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--------TPPYVDSPMAIGYNATISAP 52
++ ++ +++ + I + DSP +
Sbjct: 47 TIDFESAKHILDDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPR 106
Query: 53 HMHATCLQLLEENLKPGMHALDIGSGTGYLTA-CFALMVGPQGRAVGVEHIPELVVSSIQ 111
++ + + G A+ IG G LT + + G R VE P++ S +
Sbjct: 107 YLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRK 164
Query: 112 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE---IPQALIDQLKPGG 168
IE L ++V GD + +D + V A A + + + +
Sbjct: 165 VIEG------LGVDGVNVITGDETV--IDGLEFDVLMVAALAEPKRRVFRNIHRYVDTET 216
Query: 169 RMVIPVGN 176
R++
Sbjct: 217 RIIYRTYT 224
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 2e-13
Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 17/143 (11%)
Query: 41 MAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVE 100
M++ ++ H ++ +K G +D G G TA A +VG GR G +
Sbjct: 1 MSLTIKNSLGQSH------DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFD 54
Query: 101 HIPELVVSSIQNIEKSAAAP----LLKEGSLSVHVGDGRKGWPEFAPY---DAIHVGAAA 153
+ + ++ + + + D F H +
Sbjct: 55 IQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTR 114
Query: 154 PEIPQALIDQ----LKPGGRMVI 172
PE + + L GG + +
Sbjct: 115 PETTIQALSKAMELLVTGGIITV 137
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 4e-13
Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 10/119 (8%)
Query: 58 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 117
L + KP DIG G+G + L PQ AV E E + N
Sbjct: 15 ALAISALAPKPHETLWDIGGGSGSIA-IEWLRSTPQTTAVCFEISEERRERILSNAINLG 73
Query: 118 AAPLLKEGSLSVHVGDGRKGWPEFAPY-DAIHVGAAA--PEIPQALIDQLKPGGRMVIP 173
+ + + + D I +G P + A +L GGR+V
Sbjct: 74 VSDR------IAVQQGAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVAN 126
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 1e-12
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 58 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 117
L L + G DIG G+G ++ + L GRA+ +E + + + +NI+
Sbjct: 45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCL---AGGRAITIEPRADRIENIQKNIDTYG 101
Query: 118 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAI-HVGAAAPEIPQALIDQLKPGGRMVIPV 174
+P + G + +A+ G + + L + L PG R+V
Sbjct: 102 LSP-----RMRAVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANA 154
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 61.7 bits (149), Expect = 6e-12
Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 125
+K G L +G +G + + ++GP+GR GVE P ++ + +
Sbjct: 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR--------DRR 126
Query: 126 SLSVHVGDGRK--GWPEFAPY-DAIHVGAAAPEIPQALIDQ----LKPGGRMVIPVGNIF 178
++ +GD R + D ++ A PE ++ L+ GG M++ +
Sbjct: 127 NIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAIKARS 186
Query: 179 QDLKVVDK 186
D+
Sbjct: 187 IDVTTEPS 194
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 9e-12
Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 15/135 (11%)
Query: 47 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 106
A ++ H + L+ +L+PG + G P + VG+++ PE +
Sbjct: 97 AVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEAL 156
Query: 107 VSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI---------HVGAAAPEIP 157
+ + A A G +++H D K YD + A E+
Sbjct: 157 DGATRLAAGHALA-----GQITLHRQDAWK-LDTREGYDLLTSNGLNIYEPDDARVTELY 210
Query: 158 QALIDQLKPGGRMVI 172
+ LKPGG +V
Sbjct: 211 RRFWQALKPGGALVT 225
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 1e-11
Identities = 35/178 (19%), Positives = 58/178 (32%), Gaps = 27/178 (15%)
Query: 45 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE 104
+ +S P T L L P L+ G G G A F R + PE
Sbjct: 25 WARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPE 81
Query: 105 LVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--APYDAIH----VGAAAPEIPQ 158
L+ K A A V+ +G+ P AP+ I + +P+
Sbjct: 82 LL--------KLARA---NAPHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSVILRLPE 130
Query: 159 ALIDQLKPGGRMVI--PVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRG 214
P + P N+ + + + ++ + + + P T D Q+RG
Sbjct: 131 L----AAPDAHFLYVGPRLNVPEVPERLAAVGWDIVAEDHVSVLAHAP-TWEDWQMRG 183
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 3e-11
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 16/116 (13%)
Query: 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124
LK GM LD+G+G G+ + MVG +G+ ++ E+V + + + K
Sbjct: 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL------ 87
Query: 125 GSLSVHVGDGRKGWPEFAP--YDAIHVGAA---APEIPQALID---QLKPGGRMVI 172
++ V + K D I + E + L + KP + I
Sbjct: 88 KNVEVLKSEENK--IPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAI 141
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 2e-10
Identities = 31/144 (21%), Positives = 48/144 (33%), Gaps = 12/144 (8%)
Query: 41 MAIGYNATISAPHMHATC--LQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAV 97
MA+G A T L + E +KPG L+IG G G L+A A VG G
Sbjct: 13 MALGPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVT 72
Query: 98 GVEHIPELVVSSI---QNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAIHVG--- 150
G++ + + Q A PL ++ + P +D + +
Sbjct: 73 GIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSL 132
Query: 151 --AAAPEIPQALIDQLKPGGRMVI 172
A+ L + V
Sbjct: 133 WYFASANALALLFKNMAAVCDHVD 156
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 3e-10
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 10/118 (8%)
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
LQ + + G LD+GS YL F L +G A+ E + S+++N+ +
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYL-PIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL 70
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVI 172
+ V + +G + E D I + I ID+L+ +V+
Sbjct: 71 -----TSKIDVRLANGLSAFEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVL 123
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 9e-10
Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 11/134 (8%)
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
L LL +P + G G G + FA + R V ++ + V + + + +
Sbjct: 48 LYLLARIKQP-QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG- 105
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVG 175
+ + VGD D + + + + L ++
Sbjct: 106 ----LIDRVELQVGDPLGIAAGQRDIDILFMDCDVFNGADVLERMNRCLAKNA--LLIAV 159
Query: 176 NIFQDLKVVDKNQD 189
N + V + ++D
Sbjct: 160 NALRRGSVAESHED 173
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 1e-09
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 20/116 (17%)
Query: 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 125
+ +H +D G G GYL ++ + G++ L+ + A L +
Sbjct: 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL---------AEARELFRLL 70
Query: 126 SLSV--HVGDGRKGWPEFA-PYDAIHVGAA---APEIPQAL---IDQLKPGGRMVI 172
GD + E YD A L I +K GG+++
Sbjct: 71 PYDSEFLEGDATE--IELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIIC 124
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 4e-09
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 31/130 (23%)
Query: 55 HAT---CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111
H T L+ L +L+PG LD+G+G+G L A A +G G+A+GV+ P ++ +
Sbjct: 104 HETTRLALKALARHLRPGDKVLDLGTGSGVL-AIAAEKLG--GKALGVDIDPMVLPQAEA 160
Query: 112 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA----------APEIPQALI 161
N +++ P EGSL + G P+D + A AP +A
Sbjct: 161 NAKRNGVRPRFLEGSLEAALPFG--------PFDLL---VANLYAELHAALAPRYREA-- 207
Query: 162 DQLKPGGRMV 171
L PGGR +
Sbjct: 208 --LVPGGRAL 215
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 1e-08
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
L+L+ + G LD+GS YL + G A+ E + S+++N+E
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYL-PIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL 64
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAI----HVGAAAPEIPQALIDQLKPGGRMVI 172
+ + V + +G + E I G I + + +L R+++
Sbjct: 65 -----KEKIQVRLANGLAAFEETDQVSVITIAGMGGRLIARILEEGLGKLANVERLIL 117
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-08
Identities = 12/123 (9%), Positives = 33/123 (26%), Gaps = 11/123 (8%)
Query: 72 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 131
A+ I G + + ++ E + ++ + +
Sbjct: 60 AIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG----YSPSRVRFLL 115
Query: 132 GDGRKGWPEFA--PYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGNIFQDLKVVDK 186
A Y + + ++ A L+ GG + + + D + D+
Sbjct: 116 SRPLDVMSRLANDSYQLVFGQVSPMDLKALVDAAWPLLRRGG--ALVLADALLDGTIADQ 173
Query: 187 NQD 189
+
Sbjct: 174 TRK 176
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-08
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 15/115 (13%)
Query: 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124
PG L+ G G G T A P ++ PE + + +N EK+
Sbjct: 34 VYPPGAKVLEAGCGIGAQTVILA-KNNPDAEITSIDISPESLEKARENTEKNGIK----- 87
Query: 125 GSLSVHVGDGRK-GWPEFAPYDAIHVGAA---APEIPQAL---IDQLKPGGRMVI 172
++ + + + + +D I V +AL LKPGG + +
Sbjct: 88 -NVKFLQANIFSLPFED-SSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITV 140
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 3e-08
Identities = 23/137 (16%), Positives = 40/137 (29%), Gaps = 26/137 (18%)
Query: 47 ATISAPHMHATCLQLLEE--NLKPGMHALDIGSGTGYLTACFALMVGPQGRAV-GVEHIP 103
P+M + LE L++ SGTGY T + V ++
Sbjct: 23 DATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLS----GLADRVTALDGSA 78
Query: 104 ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ 163
E++ A A ++ D W +DA+ +P +
Sbjct: 79 EMI----------AEAGRHGLDNVEFRQQDLFD-WTPDRQWDAVFFAHWLAHVPDDRFEA 127
Query: 164 --------LKPGGRMVI 172
+ PGG +
Sbjct: 128 FWESVRSAVAPGGVVEF 144
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 3e-08
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 10/118 (8%)
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
L+ + + DIGS YL CFA+ A+ E + S+ + + S
Sbjct: 12 LEKVASYITKNERIADIGSDHAYL-PCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL 70
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAI---HVGAAA-PEIPQALIDQLKPGGRMVI 172
+ V G+G + D I +G I + +L ++++
Sbjct: 71 -----TEQIDVRKGNGLAVIEKKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLIL 123
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 3e-08
Identities = 37/124 (29%), Positives = 47/124 (37%), Gaps = 23/124 (18%)
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
LQLL N +PG LD+G GTG LT A +G ++ + IEK+
Sbjct: 50 LQLL--NPQPGEFILDLGCGTGQLTEKIA---QSGAEVLGTDNAATM-------IEKARQ 97
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA---APEIPQAL---IDQLKPGGRMVI 172
L V D R + P DA+ A E A+ LK GGR V
Sbjct: 98 ----NYPHLHFDVADARN-FRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVA 152
Query: 173 PVGN 176
G
Sbjct: 153 EFGG 156
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-08
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 24/139 (17%)
Query: 60 QLLEENL--KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 117
++L EN+ LD+G G G + + +I+ +++
Sbjct: 42 KILVENVVVDKDDDILDLGCGYGVI-GIALADEVKSTTMADINRR------AIKLAKENI 94
Query: 118 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAI------HVGAAAPEIPQALIDQ----LKPG 167
L + V D + + Y+ I G E+ +I++ LK
Sbjct: 95 KLNNLDNYDIRVVHSDLYENVKD-RKYNKIITNPPIRAGK---EVLHRIIEEGKELLKDN 150
Query: 168 GRMVIPVGNIFQDLKVVDK 186
G + + V Q K + K
Sbjct: 151 GEIWV-VIQTKQGAKSLAK 168
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 51.1 bits (121), Expect = 4e-08
Identities = 40/172 (23%), Positives = 57/172 (33%), Gaps = 11/172 (6%)
Query: 52 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111
P L++L+ G LD+G G+LT A GP R VG++ L+ S+ Q
Sbjct: 30 PSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGP-SRMVGLDIDSRLIHSARQ 88
Query: 112 NIEK--SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQAL-IDQLKPGG 168
NI S L + +G +G A P A L
Sbjct: 89 NIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGAD 148
Query: 169 RMVIPVGNIFQDLKVVDKNQDGSLSIWSETSV-------RYVPLTSRDAQLR 213
V P +F V D + E V ++V L D L+
Sbjct: 149 TSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLK 200
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 7e-08
Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 22/128 (17%)
Query: 53 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112
+T + E+ +K LD+G G GY T + +AVGV+ ++
Sbjct: 38 GSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMI------ 88
Query: 113 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP--YDAIHVGAA---APEIPQALIDQ---L 164
+ LS GD F ++AI + E +AL + L
Sbjct: 89 ---QKGKERGEGPDLSFIKGDLSS--LPFENEQFEAIMAINSLEWTEEPLRALNEIKRVL 143
Query: 165 KPGGRMVI 172
K G I
Sbjct: 144 KSDGYACI 151
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 7e-08
Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124
+KPG LD+GSG+G + +A G G++ + + E +
Sbjct: 33 RMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAE---ELGV--S 85
Query: 125 GSLSVHVGDGRKGWPEFAPYDAI-------HVGAAAPEIPQALIDQLKPGGRMVI 172
+ D G+ D G + L LKPGG M+I
Sbjct: 86 ERVHFIHNDAA-GYVANEKCDVAACVGATWIAG-GFAGAEELLAQSLKPGGIMLI 138
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 1e-07
Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 15/123 (12%)
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
+ E + +D+G G G T A + P + +G + + I+ E
Sbjct: 29 IDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATM----IKTAEVIKEGS 84
Query: 121 LLKEGSLSVHVGDG------RKGWPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGR 169
++S + + D I A + ++ L+ G
Sbjct: 85 PDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGT 144
Query: 170 MVI 172
+ I
Sbjct: 145 IAI 147
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-07
Identities = 24/169 (14%), Positives = 48/169 (28%), Gaps = 23/169 (13%)
Query: 45 YNATISAPHMHATC-----LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGV 99
N + +M + + + + + +++G TGY AL + G+ +
Sbjct: 43 ANESHPDSYMSTSPLAGQLMSFVLKLVNA-KKTIEVGVFTGYSLLLTALSIPDDGKITAI 101
Query: 100 EHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA-------PYDAIHVGAA 152
+ E + I K+ + D YD V A
Sbjct: 102 DFDREAYEIGLPFIRKAGVEHKIN-----FIESDAMLALDNLLQGQESEGSYDFGFVDAD 156
Query: 153 APEIP---QALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSET 198
P + L+ +K GG ++ N V + +
Sbjct: 157 KPNYIKYHERLMKLVKVGG--IVAYDNTLWGGTVAQPESEVPDFMKENR 203
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 33/160 (20%), Positives = 52/160 (32%), Gaps = 23/160 (14%)
Query: 45 YNATISAPHMHATC-----LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGV 99
A M + L +L + + + ++IG TGY AL + G+ + +
Sbjct: 52 VTAKHPWNIMTTSADEGQFLSMLLKLINA-KNTMEIGVYTGYSLLATALAIPEDGKILAM 110
Query: 100 EHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA-------PYDAIHVGAA 152
+ E + I+K+ + G E YD I V A
Sbjct: 111 DINKENYELGLPVIKKAGVDHKID-----FREGPALPVLDEMIKDEKNHGSYDFIFVDAD 165
Query: 153 APEIP---QALIDQLKPGGRMVIPVGNIFQDLKVVDKNQD 189
+ LID +K GG VI N + VV
Sbjct: 166 KDNYLNYHKRLIDLVKVGG--VIGYDNTLWNGSVVAPPDA 203
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 16/128 (12%)
Query: 71 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130
ALD+G+ TGY AL + GR V E + ++ A + +
Sbjct: 72 KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKID-----LR 126
Query: 131 VGDGRKGWPEFA------PYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGNIFQDL 181
+ + E +D V A + + L+PGG ++ V +
Sbjct: 127 LKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGG--ILAVLRVLWRG 184
Query: 182 KVVDKNQD 189
KV+ +
Sbjct: 185 KVLQPPKG 192
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-07
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 53 HMHATCLQLLEE--NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSI 110
H H L L+ + + LDIG+G G+ F+ V +GV+ E+V
Sbjct: 4 HHHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMV---- 56
Query: 111 QNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY-----DAIHVGAAA---PEIPQALID 162
+ A++ ++G +V ++G E P+ D I AA ++ +A+ +
Sbjct: 57 ----EVASSFAQEKGVENVRF---QQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVRE 109
Query: 163 Q---LKPGGRMVI 172
LK GR ++
Sbjct: 110 VARVLKQDGRFLL 122
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-07
Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 31/196 (15%)
Query: 3 EHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLL 62
L Y + S + + + + T + M + A +Q+L
Sbjct: 10 PELYKYLLDISLREHPALAALRKE------TSTMELANMQVA--------PEQAQFMQML 55
Query: 63 EENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL 122
+ L++G+ TGY +L + G+ + + + ++ +
Sbjct: 56 IRLTRA-KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKI 114
Query: 123 KEGSLSVHVGDGRKGWPEFA------PYDAIHVGAAAPEIP---QALIDQLKPGGRMVIP 173
K + +G +D I + A + + + P G +I
Sbjct: 115 K-----LRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKG--LIA 167
Query: 174 VGNIFQDLKVVDKNQD 189
+ NIF D KV+D N
Sbjct: 168 IDNIFWDGKVIDPNDT 183
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-07
Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 32/175 (18%)
Query: 41 MAIGYNATISAPHM----------HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMV 90
M + + T LL + +K LD+ G G +
Sbjct: 1 MGFKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG 60
Query: 91 GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP--YDAIH 148
VGV+ +++ + + + +E ++ VGD RK F +D +
Sbjct: 61 ---FEVVGVDISEDMIRKAREYAKS-------RESNVEFIVGDARK--LSFEDKTFDYVI 108
Query: 149 VGAAAPEIPQALIDQ--------LKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIW 195
+ ++Q LKP G+ ++ ++ + L + ++ W
Sbjct: 109 FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYW 163
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-07
Identities = 18/128 (14%), Positives = 42/128 (32%), Gaps = 26/128 (20%)
Query: 55 HAT---CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111
H T + +E + + D+G+G+G L A A +G + + E + ++ +
Sbjct: 44 HQTTQLAMLGIERAMVKPLTVADVGTGSGIL-AIAAHKLGA-KSVLATDISDESMTAAEE 101
Query: 112 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD--------AIHVGAAAPEIPQALIDQ 163
N + + + +D I + P++
Sbjct: 102 NAALNGIYDIA------LQKTSLLADVDG--KFDLIVANILAEILL-DLIPQLDSH---- 148
Query: 164 LKPGGRMV 171
L G+++
Sbjct: 149 LNEDGQVI 156
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 4e-07
Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 20/132 (15%)
Query: 51 APHMHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSS 109
LL + L+ ++ D+G G G T G++ ++
Sbjct: 15 EDERTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDM---- 69
Query: 110 IQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA---APEIPQAL---IDQ 163
+EK+A + + + D W D ++ A P+ L +DQ
Sbjct: 70 ---LEKAAD----RLPNTNFGKADLAT-WKPAQKADLLYANAVFQWVPDHLAVLSQLMDQ 121
Query: 164 LKPGGRMVIPVG 175
L+ GG + + +
Sbjct: 122 LESGGVLAVQMP 133
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 4e-07
Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 19/134 (14%)
Query: 60 QLLEENL--KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 117
+ ++L +D+G G G + L PQ + V V+ P V SS N+
Sbjct: 212 RFFMQHLPENLEGEIVDLGCGNGVI-GLTLLDKNPQAKVVFVDESPMAVASSRLNV---E 267
Query: 118 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAI------HVGAAA-PEIPQALIDQ----LKP 166
+ + G ++A+ H A + + LK
Sbjct: 268 TNMPEALDRCEFMINNALSGVEP-FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI 326
Query: 167 GGRMVIPVGNIFQD 180
G + I V N D
Sbjct: 327 NGELYI-VANRHLD 339
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 5e-07
Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 14/110 (12%)
Query: 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124
NL +D+G G+G +T A ++++ +I+ +++ A
Sbjct: 32 NLNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDG----AIEVTKQNLAK--FNI 82
Query: 125 GSLSVHVGDGRKGWPEFAPYDAIHVG--AAAPEIPQALIDQLKPGGRMVI 172
+ + G + + +G +I + L K +V
Sbjct: 83 KNCQIIKGRAEDVLDKLEF-NKAFIGGTKNIEKIIEIL--DKKKINHIVA 129
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 6e-07
Identities = 15/123 (12%), Positives = 34/123 (27%), Gaps = 30/123 (24%)
Query: 60 QLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVV---SSIQNIEK 115
+ L +D G G G+ + ++ + ++
Sbjct: 8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSVIT 64
Query: 116 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEI--PQALIDQ----LKPGGR 169
+ + + S D I + ++ Q +I + LK GR
Sbjct: 65 LSDPKEIPDNS-----------------VDFILFANSFHDMDDKQHVISEVKRILKDDGR 107
Query: 170 MVI 172
++I
Sbjct: 108 VII 110
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 6e-07
Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 24/123 (19%)
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
+ LD+G+GTG L+A P+ V+ S + +E A
Sbjct: 37 SIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVD-------MSEKMLEI-AKNR 87
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAI-------HVGAAAPEIPQALI----DQLKPGGR 169
+ D K + YD + H+ E + L LK G
Sbjct: 88 FRGNLKVKYIEADYSK-YDFEEKYDMVVSALSIHHL---EDEDKKELYKRSYSILKESGI 143
Query: 170 MVI 172
+
Sbjct: 144 FIN 146
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 8e-07
Identities = 36/196 (18%), Positives = 64/196 (32%), Gaps = 31/196 (15%)
Query: 3 EHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLL 62
L Y S S + + R T +PM I A L LL
Sbjct: 22 PSLYSYLQSISADDSFYLAQLRRE------TAHLPGAPMQIS--------PEQAQFLGLL 67
Query: 63 EENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL 122
L+IG GY AL + P G+ + + P + + +K+ A +
Sbjct: 68 ISLTGA-KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKI 126
Query: 123 KEGSLSVHVGDGRKGWPEFA------PYDAIHVGAAAPEIP---QALIDQLKPGGRMVIP 173
+ +G + +D I + A P + ++ L+ GG ++
Sbjct: 127 S-----LRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGG--LMV 179
Query: 174 VGNIFQDLKVVDKNQD 189
+ N+ KV + +
Sbjct: 180 IDNVLWHGKVTEVDPQ 195
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 17/140 (12%)
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
L LL + ++ +DIG+ TGY L + G + + + + + EK+
Sbjct: 56 LALLVKLMQA-KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG- 113
Query: 119 APLLKEGSLSVHVGDGRKGWPEFA------PYDAIHVGAAAPEIP---QALIDQLKPGGR 169
+ + + + E YD I++ A + + L+ GG
Sbjct: 114 ----LSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGG- 168
Query: 170 MVIPVGNIFQDLKVVDKNQD 189
+I V N+ + +V D+
Sbjct: 169 -LIAVDNVLRRGQVADEENQ 187
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-06
Identities = 25/123 (20%), Positives = 34/123 (27%), Gaps = 26/123 (21%)
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSA 117
L L G L++G G GY G + PEL A
Sbjct: 34 LTKFLGELPAGAKILELGCGAGYQAEAML----AAGFDVDATDGSPELA----------A 79
Query: 118 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ--------LKPGGR 169
A + V + YDA+ A +P+ + LKPGG
Sbjct: 80 EAS--RRLGRPVRTMLFHQ-LDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGL 136
Query: 170 MVI 172
Sbjct: 137 FYA 139
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-06
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 16/139 (11%)
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
LQLL + + L+IG+ GY T A + GR V +E + + NIE++
Sbjct: 50 LQLLVQIQGA-RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN- 107
Query: 119 APLLKEGSLSVHVGDGRKGWPEFA-----PYDAIHVGAAAPEIP---QALIDQLKPGGRM 170
+ V G + P+D I + A P + + +PG
Sbjct: 108 ----LNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGT-- 161
Query: 171 VIPVGNIFQDLKVVDKNQD 189
VI N+ ++ +V+D +
Sbjct: 162 VIIGDNVVREGEVIDNTSN 180
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 1e-06
Identities = 36/134 (26%), Positives = 51/134 (38%), Gaps = 22/134 (16%)
Query: 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116
+ L G LD+G+G G LT A VGVE V+S + +E +
Sbjct: 222 ALQERLGPEGVRGRQVLDLGAGYGALTLPLAR---MGAEVVGVEDDLASVLSLQKGLEAN 278
Query: 117 AAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI------HVGAAA-PEIPQALIDQ----LK 165
A D + E A +D I HVG A ++ QA ++ L+
Sbjct: 279 ALKA-------QALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLR 331
Query: 166 PGGRMVIPVGNIFQ 179
PGG + V N F
Sbjct: 332 PGGVFFL-VSNPFL 344
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 30/136 (22%), Positives = 42/136 (30%), Gaps = 24/136 (17%)
Query: 60 QLLEENLKPGMHA--LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 117
QLL L P LD+G G G L + P+ R + V +S + +
Sbjct: 186 QLLLSTLTPHTKGKVLDVGCGAGVL-SVAFARHSPKIRLTLCDVSAPAVEASRATLAANG 244
Query: 118 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAI------HVG-AAAPEIPQALIDQ----LKP 166
V + +D I H G + + Q LI L
Sbjct: 245 V-------EGEVFASNVFSEVKG--RFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS 295
Query: 167 GGRMVIPVGNIFQDLK 182
GG + I V N F
Sbjct: 296 GGELRI-VANAFLPYP 310
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-06
Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 19/156 (12%)
Query: 45 YNATISAPHMHATC-----LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGV 99
N P L LL + L+IG+ GY T A + G+ + +
Sbjct: 36 NNHRAGLPAHDVAANQGQFLALLVRLTQA-KRILEIGTLGGYSTIWMARELPADGQLLTL 94
Query: 100 EHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA---PYDAIHVGAAAPEI 156
E + +N++ + + +++ G + +D I + A P
Sbjct: 95 EADAHHAQVARENLQLAG-----VDQRVTLREGPALQSLESLGECPAFDLIFIDADKPNN 149
Query: 157 P---QALIDQLKPGGRMVIPVGNIFQDLKVVDKNQD 189
P + + +PG +I N+ +D +VV+
Sbjct: 150 PHYLRWALRYSRPGT--LIIGDNVVRDGEVVNPQSA 183
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 23/165 (13%)
Query: 45 YNATISAPHMHATC-----LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGV 99
T++ +M + L +L + ++IG+ TGY + CFA + G+ +
Sbjct: 33 ETGTLAQANMQISPEEGQFLNILTKISGA-KRIIEIGTFTGYSSLCFASALPEDGKILCC 91
Query: 100 EHIPELVVSSIQNIEKS-----------AAAPLLKE-GSLSVHVGDGRKGWPEFAPYDAI 147
+ E + + +++ +A L+ + D
Sbjct: 92 DVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLF 151
Query: 148 HVGAAAPEIP---QALIDQLKPGGRMVIPVGNIFQDLKVVDKNQD 189
+ A P ++ LKPGG ++ N+ D V D +
Sbjct: 152 FLDADKENYPNYYPLILKLLKPGG--LLIADNVLWDGSVADLSHQ 194
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-06
Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 13/123 (10%)
Query: 60 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE--------LVVSSIQ 111
L E L +D G G TA A G + + + L I+
Sbjct: 14 DFLAEVLDDESIVVDATMGNGNDTAFLA---GLSKKVYAFDVQEQALGKTSQRLSDLGIE 70
Query: 112 NIE--KSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGR 169
N E L + G+ A I E + ++D+L+ GGR
Sbjct: 71 NTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGR 130
Query: 170 MVI 172
+ I
Sbjct: 131 LAI 133
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-06
Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 29/121 (23%)
Query: 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124
LK LD+ +G G++ FA V + V + +++ K A A +
Sbjct: 34 ALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDIL--------KVARAFIEGN 82
Query: 125 G--SLSVHVGDGRKGWPEFAPY-----DAIHVGAAA---PEIPQALIDQ---LKPGGRMV 171
G + GD E P+ + AA P + + LK GG+++
Sbjct: 83 GHQQVEYVQGDA-----EQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL 137
Query: 172 I 172
+
Sbjct: 138 L 138
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 3e-06
Identities = 21/127 (16%), Positives = 33/127 (25%), Gaps = 25/127 (19%)
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
L E P + +D G G T + R +G++ + A
Sbjct: 47 LPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSAL---------EIA 94
Query: 119 APLLKEGSLSVHVGDGRKGWPEFA----PYDAIHVGAAA-----PEIPQALIDQ----LK 165
A ++S + DG DA E + L L
Sbjct: 95 AKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLG 154
Query: 166 PGGRMVI 172
G M +
Sbjct: 155 KQGAMYL 161
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 3e-06
Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 14/144 (9%)
Query: 36 YVDSPMAIGYNATISAPHMHATCLQLLE--ENLKPGMHALDIGSGTGYLTACFALMVGPQ 93
++ N P L+ L +NL DIG GTG T A V
Sbjct: 12 ELNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVT-- 69
Query: 94 GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153
G+ G++ + + + + L + ++ VG D I A
Sbjct: 70 GQVTGLDFLSGFID---IFNRNARQSGL--QNRVTGIVGSMDDLPFRNEELDLIWSEGAI 124
Query: 154 --PEIPQALIDQ---LKPGGRMVI 172
+ L + LK GG + +
Sbjct: 125 YNIGFERGLNEWRKYLKKGGYLAV 148
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 3e-06
Identities = 24/138 (17%), Positives = 40/138 (28%), Gaps = 22/138 (15%)
Query: 54 MHATCLQLLEE--NLKPGMHALDIGSGTGYLTACF-----ALMVGPQGRAVGVEHIPELV 106
M ++ + K + L IG G G + A G VE E +
Sbjct: 36 MDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI 95
Query: 107 VSSIQNIEKSAAAPLLKEGSLSVHVG------DGRKGWPEFAPYD---AIHVGAAAPEIP 157
+ + K+ L+ + H E +D I + +IP
Sbjct: 96 AKYKELVAKT---SNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIP 152
Query: 158 QAL---IDQLKPGGRMVI 172
L L +M+I
Sbjct: 153 ATLKFFHSLLGTNAKMLI 170
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-06
Identities = 26/122 (21%), Positives = 37/122 (30%), Gaps = 26/122 (21%)
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
L + K + L+ G GTG LT L G+E E+ A
Sbjct: 38 LEDVVNKSFGNVLEFGVGTGNLTNKLLLAG---RTVYGIEPSREMR----------MIAK 84
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAI-------HVGAAAPEIPQAL---IDQLKPGGRM 170
S+ GD + D I H+ E A+ L GG++
Sbjct: 85 EKLPKEFSITEGDFLS-FEVPTSIDTIVSTYAFHHL--TDDEKNVAIAKYSQLLNKGGKI 141
Query: 171 VI 172
V
Sbjct: 142 VF 143
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 4e-06
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-SAAAPLLKE 124
++ G L +G+ +G + + ++ G+A GVE P +V + ++ PLL +
Sbjct: 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLAD 133
Query: 125 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ----LKPGGRMVIPV 174
D ++V A P+ I LK G M++ +
Sbjct: 134 ARFPQSYK------SVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVI 181
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-06
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 26/135 (19%)
Query: 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPEL 105
T ++ A + L+ L PG L++G+GTGY P + VGVE +
Sbjct: 14 YGTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAM 68
Query: 106 VVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP--YDAIHVGAA---APEIPQAL 160
+ + + G P F +D + + ++ + L
Sbjct: 69 L--------AVGRR---RAPEATWVRAWGEA-LP-FPGESFDVVLLFTTLEFVEDVERVL 115
Query: 161 IDQ---LKPGGRMVI 172
++ L+PGG +V+
Sbjct: 116 LEARRVLRPGGALVV 130
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 4e-06
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 12/113 (10%)
Query: 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124
L DIG GTG T A V G+ G++ P+ + +N K+ A
Sbjct: 43 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCA----- 95
Query: 125 GSLSVHVGDGRKGWPEFAPYDAIHVGAAA--PEIPQALIDQ---LKPGGRMVI 172
+ G + D I A + + + LK GG + +
Sbjct: 96 DRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAV 148
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 6e-06
Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 26/148 (17%)
Query: 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPEL 105
T H LEE LK LD+G GTG + V V+
Sbjct: 32 YETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVD----- 83
Query: 106 VVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP--YDAIHVGAAA----PEIPQA 159
S + +E + ++G +V F ++A+ +A
Sbjct: 84 --PSKEMLEVAR-----EKGVKNVVEAKAED--LPFPSGAFEAVLALGDVLSYVENKDKA 134
Query: 160 LIDQ---LKPGGRMVIPVGNIFQDLKVV 184
+ L P G ++ V N + L+ +
Sbjct: 135 FSEIRRVLVPDGLLIATVDNFYTFLQQM 162
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 7e-06
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 24/114 (21%)
Query: 68 PGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 126
LD+GSGTG T A G + G+E LV + A S
Sbjct: 41 VDGVILDVGSGTGRWTGHLA----SLGHQIEGLEPATRLV--------ELARQ---THPS 85
Query: 127 LSVHVGDGRKGWPEFAPYDAIHVGAA-----APEIPQAL---IDQLKPGGRMVI 172
++ H G + + + E+P AL ++ GG +++
Sbjct: 86 VTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM 139
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 8e-06
Identities = 29/151 (19%), Positives = 46/151 (30%), Gaps = 29/151 (19%)
Query: 45 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIP 103
+ +A + +L++ G LD G G G + + QG +G + P
Sbjct: 23 WRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLS----KQGHDVLGTDLDP 78
Query: 104 ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH-----VGAAAPEIPQ 158
L+ A VGD +D I +G A + +
Sbjct: 79 ILI--------DYAKQ---DFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGRE 127
Query: 159 ALIDQ----LKPGGRMVI----PVGNIFQDL 181
+ L GR VI G +F D
Sbjct: 128 PALANIHRALGADGRAVIGFGAGRGWVFGDF 158
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 15/137 (10%)
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
L L + P L+IG+ GY A + P+ V +E + ++++
Sbjct: 46 LLHLLKMAAP-ARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALG- 102
Query: 119 APLLKEGSLSVHVGDGRKGWPEFA---PYDAIHVGAAAPEIP---QALIDQLKPGGRMVI 172
E + + GD + + +D + + AA + ++PGG +I
Sbjct: 103 ----LESRIELLFGDALQLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGG--LI 156
Query: 173 PVGNIFQDLKVVDKNQD 189
N+ V + + +
Sbjct: 157 LSDNVLFRGLVAETDIE 173
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-05
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 17/117 (14%)
Query: 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-SAAAPLLKE 124
+KPG L +G+ +G + + +VGP G VE I +K + P++
Sbjct: 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVI-- 132
Query: 125 GSLSVHVGDGRK--GWPEFAP-YDAIHVGAAAPEIPQALIDQ----LKPGGRMVIPV 174
D R + D I A P+ + + L+ GG VI +
Sbjct: 133 -------EDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISI 182
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-05
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 34/138 (24%)
Query: 53 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112
+ +A LL+ K LDIG +G L A G + G+E PE
Sbjct: 17 YYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKEN-GTR--VSGIEAFPE-------- 65
Query: 113 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP--YDAI-------HVGAAAPEIPQALIDQ 163
AA KE V +GD + +D + H+ + P A+I++
Sbjct: 66 -----AAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHL----FD-PWAVIEK 115
Query: 164 ----LKPGGRMVIPVGNI 177
+K G ++ + N+
Sbjct: 116 VKPYIKQNGVILASIPNV 133
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-05
Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 23/117 (19%)
Query: 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAV-GVEHIPELVVSSIQNIEKSAAAPLLKE 124
+ L+IG G T A P + + ++ + I + A +
Sbjct: 49 SGAVSNGLEIGCAAGAFTEKLA----PHCKRLTVID-------VMPRAIGR-ACQRTKRW 96
Query: 125 GSLSVHVGDGRKGWPEFAPYDAI-------HVGAAAPEIP--QALIDQLKPGGRMVI 172
+S D + +D I ++ ++ L PGG +V
Sbjct: 97 SHISWAATDILQFSTA-ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 13/114 (11%)
Query: 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124
+++ G LD+G G G A R G+ V Q ++ AA L
Sbjct: 58 DVRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVN---QANARATAAGL--A 110
Query: 125 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIP--QALIDQ----LKPGGRMVI 172
++ D E A +DA+ + +P + + L+PGG + I
Sbjct: 111 NRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAI 164
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-05
Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 12/114 (10%)
Query: 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-SAAAPLLKE 124
+K L +G+ G + + +G +E+ P ++ + + P+L +
Sbjct: 72 IKRDSKILYLGASAGTTPS-HVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGD 130
Query: 125 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ----LKPGGRMVIPV 174
+ + D I+ A P + LI LK GG +I +
Sbjct: 131 ANKPQEYAN------IVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI 178
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-05
Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 25/148 (16%)
Query: 46 NATISAPHMHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE 104
+ T+ AP ++ + G +DIGSG G L+ A ++
Sbjct: 21 SKTLFAPIYPIIAENIINRFGITAGT-CIDIGSGPGALSIALAKQSD--FSIRALDFSKH 77
Query: 105 LVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY-----DAIHVGAAA---PEI 156
+ +++NI + + + GD P D I + ++
Sbjct: 78 MNEIALKNIADANL-----NDRIQIVQGDV-----HNIPIEDNYADLIVSRGSVFFWEDV 127
Query: 157 PQALIDQ---LKPGGRMVIPVGNIFQDL 181
A + LK GG+ I G ++L
Sbjct: 128 ATAFREIYRILKSGGKTYIGGGFGNKEL 155
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-05
Identities = 28/144 (19%), Positives = 43/144 (29%), Gaps = 14/144 (9%)
Query: 36 YVDSPMAIGYNATISAPHMHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQG 94
P+ S +L L+ LD+G+G G G
Sbjct: 49 LYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-- 106
Query: 95 RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI---HVGA 151
+ P +N E + A L +++V G + E YD I
Sbjct: 107 SIDCLNIAPVQNK---RNEEYNNQAGL--ADNITVKYGSFLEIPCEDNSYDFIWSQDAFL 161
Query: 152 AAPEIPQA---LIDQLKPGGRMVI 172
+P+ + LKP G M I
Sbjct: 162 HSPDKLKVFQECARVLKPRGVMAI 185
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 6e-05
Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 14/145 (9%)
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
++ L + L+IG+ GY + FA + +E ++ + QN+
Sbjct: 63 IKQLIRMNNV-KNILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAKQNLATYH- 119
Query: 119 APLLKEGSLSVHVGDGRKGWPEFA--PYDAIHVGAAAPEIP---QALIDQLKPGGRMVIP 173
E + + G+ + + YD I + AA + + LK G ++
Sbjct: 120 ----FENQVRIIEGNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQG--LVI 173
Query: 174 VGNIFQDLKVVDKNQDGSLSIWSET 198
N+ V D S ++
Sbjct: 174 TDNVLYHGFVSDIGIVRSRNVRQMV 198
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 6e-05
Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 35/133 (26%)
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSA 117
L+ K LDIG G G F + +G ++GV+ +++
Sbjct: 32 LRRYIPYFKGCRRVLDIGCGRGE----FLELCKEEGIESIGVDINEDMIKFCEGK----- 82
Query: 118 AAPLLKEGSLSVHVGDGRKGWPEF--APYDAI-------HVGAAAPEIPQALIDQ----L 164
+V D + D + H+ PE L+ +
Sbjct: 83 ---------FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL---DPERLFELLSLCYSKM 130
Query: 165 KPGGRMVIPVGNI 177
K +VI N
Sbjct: 131 KYSSYIVIESPNP 143
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-05
Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 12/126 (9%)
Query: 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSI 110
+ L++ +D+G G G L + GV+ + +
Sbjct: 14 NQQRMNGVVAALKQ--SNARRVIDLGCGQGNLLKILLKD-SFFEQITGVDVSYRSLEIAQ 70
Query: 111 QNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI-------HVGAA-APEIPQALID 162
+ +++ P + L + G F YDA H+ + + L +
Sbjct: 71 ERLDR-LRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFE 129
Query: 163 QLKPGG 168
+P
Sbjct: 130 FAQPKI 135
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Length = 227 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 7e-05
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 125
+KPG L +G +G + + +VG +G+ G+E P ++ + +E+
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR-------- 122
Query: 126 SLSVHVGDGRK--GWPEFAP-YDAIHVGAAAPEIPQALIDQ----LKPGGRMVIPV 174
++ +GD K + P D I A P + LID LK GG +I V
Sbjct: 123 NIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAV 178
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 8e-05
Identities = 22/149 (14%), Positives = 48/149 (32%), Gaps = 18/149 (12%)
Query: 38 DSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAV 97
D A Y I + + L++ +G G LT F G V
Sbjct: 52 DEGAADTYRDLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFL----DLGWEV 107
Query: 98 -GVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--- 153
+E ++ + ++ A AP ++ GD + + + + + +
Sbjct: 108 TALELSTSVLAAF---RKRLAEAPADVRDRCTLVQGDMSA-FALDKRFGTVVISSGSINE 163
Query: 154 ---PEIPQAL---IDQLKPGGRMVIPVGN 176
+ + L+PGG+ ++ +
Sbjct: 164 LDEADRRGLYASVREHLEPGGKFLLSLAM 192
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 9e-05
Identities = 19/116 (16%), Positives = 31/116 (26%), Gaps = 18/116 (15%)
Query: 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN---IEKSAAAPL 121
P +D G G G G R GV +S+ Q ++ +
Sbjct: 114 QAGPDDTLVDAGCGRGGSMVMAHRRFGS--RVEGVT------LSAAQADFGNRRARELRI 165
Query: 122 LKEGSLSVHVGDGRKGWPEFAPYDAI----HVGAA-APEIPQALIDQLKPGGRMVI 172
+ + V + + A ++ LK GGR V
Sbjct: 166 --DDHVRSRVCNMLDTPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVT 219
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 1e-04
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 52 PHMHAT--CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSS 109
A +++ + G +D G+G G L AC + ++G + P+ + ++
Sbjct: 33 DASTAAYFLIEIYNDGNIGGRSVIDAGTGNGIL-ACGSYLLGA-ESVTAFDIDPDAIETA 90
Query: 110 IQNIEK 115
+N
Sbjct: 91 KRNCGG 96
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 1e-04
Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 26/136 (19%)
Query: 51 APHMHATCLQLLEE------NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE 104
H Q+ L++G GTG + R + ++
Sbjct: 16 RAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLI---ARGYRYIALDADAA 72
Query: 105 LVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP--YDAIHVGAA---APEIPQA 159
++ E + + V D R P + V P+ P+
Sbjct: 73 ML-------EVFRQKIAGVDRKVQVVQADARA-IP-LPDESVHGVIVVHLWHLVPDWPKV 123
Query: 160 LIDQ---LKPGGRMVI 172
L + LKPGG ++
Sbjct: 124 LAEAIRVLKPGGALLE 139
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 1e-04
Identities = 25/121 (20%), Positives = 35/121 (28%), Gaps = 28/121 (23%)
Query: 67 KPGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 125
+ LD+G G G+L A +G AVGV+ LV AA
Sbjct: 51 RQPERVLDLGCGEGWLLRALA----DRGIEAVGVDGDRTLV---------DAARAAGAGE 97
Query: 126 SLSVHVGDGRKGWPEFA-PYDAI---------HVGAAAPEIPQALIDQLKPGGRMVIPVG 175
+ YD I + + L PGG +VI
Sbjct: 98 VHLASYAQLAEAKVPVGKDYDLICANFALLHQDIIELLSAMRTL----LVPGGALVIQTL 153
Query: 176 N 176
+
Sbjct: 154 H 154
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 1e-04
Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 12/162 (7%)
Query: 54 MHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSS--- 109
Q+++E + +D+GSG G + A + GVE +
Sbjct: 158 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCK-HHYGVEKADIPAKYAETM 216
Query: 110 IQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEFAPYDAIHVGAAA--PEIPQALID--- 162
+ K K ++ GD A I V A PE+ L +
Sbjct: 217 DREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFA 276
Query: 163 QLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVP 204
+K GGR+V + ++ +N +I + +
Sbjct: 277 NMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSPLK 318
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 1e-04
Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 24/132 (18%)
Query: 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQN 112
MH ++ +PG + L++GS G T+ VE +S +
Sbjct: 29 MHPFMVRAFTPFFRPG-NLLELGSFKGDFTSRLQ----EHFNDITCVE-------ASEEA 76
Query: 113 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI-------HVGAAAPEIPQALIDQLK 165
I A LK+G ++ YD I H+ + + D L
Sbjct: 77 IS--HAQGRLKDG-ITYIHSRFEDAQLP-RRYDNIVLTHVLEHIDDPVALLKRINDDWLA 132
Query: 166 PGGRMVIPVGNI 177
GGR+ + N
Sbjct: 133 EGGRLFLVCPNA 144
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 2e-04
Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 26/139 (18%)
Query: 42 AIGYNAT-ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVE 100
Y+ T + + + LL L G DIG+GTG + + VE
Sbjct: 9 GKQYSQTRVPDIRIVNAIINLLN--LPKGSVIADIGAGTGGYS---VALANQGLFVYAVE 63
Query: 101 HIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-GWPEFAPYDAIHVGAAA---PEI 156
+ +++ P + G P+ D + A +
Sbjct: 64 PSIVM-------RQQAVVHP-----QVEWFTGYAENLALPD-KSVDGVISILAIHHFSHL 110
Query: 157 PQALIDQ---LKPGGRMVI 172
++ + ++ G +++
Sbjct: 111 EKSFQEMQRIIRDGTIVLL 129
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 29/123 (23%), Positives = 41/123 (33%), Gaps = 21/123 (17%)
Query: 60 QLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAV-GVEHIPELVVSSIQNIEKSA 117
++LE + LD+G G G + A G V + SI N+E+
Sbjct: 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLA----ANGYDVDAWDKNAM----SIANVERIK 74
Query: 118 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA-----APEIPQAL---IDQLKPGGR 169
+ L +L V D YD I A IP + KPGG
Sbjct: 75 SIENLD--NLHTRVVDLNN-LTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGY 131
Query: 170 MVI 172
+I
Sbjct: 132 NLI 134
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 22/134 (16%)
Query: 62 LEENLKPGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAP 120
+ E ++PG DIG GTG T A GV+ S + +E +
Sbjct: 27 VLEQVEPGKRIADIGCGTGTATLLLA-----DHYEVTGVD-------LSEEMLEIAQEKA 74
Query: 121 LLKEGSLSVHVGDGRK-GWPE-----FAPYDAIHVGAAAPEIPQAL---IDQLKPGGRMV 171
+ + V D R+ PE D+++ ++ Q L GG+++
Sbjct: 75 METNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL 134
Query: 172 IPVGNIFQDLKVVD 185
V + ++ + +
Sbjct: 135 FDVHSPYKMETLFN 148
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 3e-04
Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 3/79 (3%)
Query: 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124
D+G+G G A + + E E+ + +++E A
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAF--S 89
Query: 125 GSLSVHVGDGRKGWPEFAP 143
+ V D
Sbjct: 90 ARIEVLEADVTLRAKARVE 108
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 4e-04
Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 36/126 (28%)
Query: 62 LEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL 121
+ L P ++IG GTG +GVE + A
Sbjct: 41 AVKCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMA----------EIA-- 81
Query: 122 LKEGSLSVHVGDGRKGWPEFAP-----YDAIHVGAAA---PEIPQALIDQ---LKPGGRM 170
++ + V G E P +D + + +AL + LK GG +
Sbjct: 82 -RKRGVFVLKGTA-----ENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYL 135
Query: 171 VIPVGN 176
++ + +
Sbjct: 136 IVGIVD 141
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Length = 433 | Back alignment and structure |
|---|
Score = 39.5 bits (91), Expect = 4e-04
Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 30/177 (16%)
Query: 54 MHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE---LVVSS 109
+ + ++ LK G +D+GSG G AL G + G E + + L +
Sbjct: 227 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCA-LSFGCEIMDDASDLTILQ 285
Query: 110 IQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY--DAIHVGAA----APEIPQALID- 162
+ ++K ++ ++ + A + ++ + +
Sbjct: 286 YEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKI 345
Query: 163 --QLKPGGRMV--------------IPVGNIFQDLKVVD-KNQDGSLSIWSETSVRY 202
K G +++ V NIF LKV ++ S+S W+ + Y
Sbjct: 346 LQTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKEDSVS-WTHSGGEY 401
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 38.6 bits (90), Expect = 7e-04
Identities = 20/119 (16%), Positives = 30/119 (25%), Gaps = 24/119 (20%)
Query: 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124
L LDIGSG G G G++ + S +
Sbjct: 52 ELNENSKVLDIGSGLGGGCMYINEKYGA--HTHGID------ICSNIVNMANERVSG--N 101
Query: 125 GSLSVHVGDGRKGWPEFAPYDAI-------HVGAAAPEIPQALIDQ----LKPGGRMVI 172
+ D +D I + L + LKP G ++I
Sbjct: 102 NKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKN---KLFQKCYKWLKPTGTLLI 157
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 38.2 bits (89), Expect = 8e-04
Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 32/160 (20%)
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSA 117
L+ LD+ GTG F + G+E S + +
Sbjct: 31 ADLVRSRTPEASSLLDVACGTGTHLEHFT----KEFGDTAGLE-------LSEDMLTHAR 79
Query: 118 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA-------PEIPQALI---DQLKPG 167
+ ++H GD R + + A+ ++ E+ A+ + L+PG
Sbjct: 80 K----RLPDATLHQGDMRD-FRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPG 134
Query: 168 GRMVIPVGNIFQDLK-----VVDKNQDGSLSIWSETSVRY 202
G +V+ + +DG SVR
Sbjct: 135 GVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVRE 174
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 38.4 bits (88), Expect = 9e-04
Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 21/157 (13%)
Query: 38 DSPMAIGYNATI--SAP---HMHATCLQLLEENLKPGMHALDIGSGTGYLT-ACFALMVG 91
D +A + I S P ++ L E + + D+G G T + +
Sbjct: 23 DENVAEVFPDMIQRSVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQ 82
Query: 92 PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGA 151
P + +G+++ +V Q+I + V + E + +
Sbjct: 83 PNVKIIGIDNSQPMVERCRQHIAAYHSEIP-------VEILCNDIRHVEIKNASMVILNF 135
Query: 152 AAPEIP--------QALIDQLKPGGRMVIPVGNIFQD 180
+P + + L P G +V+ F+D
Sbjct: 136 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFED 172
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 215 | |||
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.97 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.97 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.97 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.97 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.96 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.96 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.93 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.92 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.76 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.75 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.74 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.73 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.73 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.72 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.71 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.7 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.69 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.68 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.68 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.68 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.68 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.68 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.67 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.67 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.67 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.67 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.67 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.67 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.67 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.67 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.67 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.67 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.66 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.66 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.66 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.66 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.64 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.64 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.64 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.64 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.64 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.63 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.63 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.63 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.63 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.63 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.63 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.63 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.63 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.63 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.63 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.63 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.63 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.62 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.62 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.62 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.62 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.62 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.62 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.62 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.62 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.62 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.62 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.62 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.61 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.61 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.61 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.61 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.61 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.61 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.61 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.61 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.6 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.6 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.6 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.6 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.6 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.6 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.6 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.6 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.6 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.6 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.6 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.6 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.6 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.6 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.6 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.6 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.59 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.59 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.59 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.59 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.59 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.59 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.59 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.59 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.59 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.59 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.59 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.58 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.58 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.58 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.58 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.58 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.58 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.58 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.58 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.58 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.58 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.58 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.58 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.57 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.57 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.57 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.57 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.57 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.57 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.57 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.57 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.57 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.57 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.57 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.57 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.56 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.56 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.56 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.56 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.56 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.56 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.56 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.56 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.55 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.55 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.55 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.55 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.55 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.55 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.54 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.54 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.54 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.54 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.54 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.54 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.54 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.54 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.54 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.54 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.53 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.53 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.53 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.53 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.53 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.53 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.52 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.52 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.52 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.52 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.52 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.51 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.51 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.51 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.51 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.51 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.51 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.5 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.5 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.5 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.5 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.49 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.49 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.49 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.48 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.48 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.48 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.47 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.47 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.46 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.46 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.46 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.45 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.45 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.45 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.45 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.45 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.45 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.45 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.45 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.45 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.44 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.44 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.44 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.44 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.44 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.43 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.43 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.43 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.43 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.43 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.42 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.42 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.41 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.41 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.41 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.41 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.41 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.41 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.41 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.41 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.41 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.41 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.41 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.4 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.39 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.39 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.39 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.39 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.38 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.37 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.37 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.37 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.37 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.36 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.36 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.35 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.34 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.33 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.33 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.33 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.33 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.33 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.32 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.32 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.32 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.31 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.31 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.31 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.3 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.29 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.29 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.29 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.27 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.27 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.27 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.26 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.26 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.25 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.24 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.23 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.22 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.21 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.2 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.2 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.19 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.17 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.17 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.17 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.16 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.16 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.16 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.14 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.14 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 99.14 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.14 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.13 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.11 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.1 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.1 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.08 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.07 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.06 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.04 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.02 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.02 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.01 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.99 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.99 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.98 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.86 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.78 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.74 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.72 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.68 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.59 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.57 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.51 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.5 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.49 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.34 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.28 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.25 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.21 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.19 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.14 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.12 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.11 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 98.11 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 98.03 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.96 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.86 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.8 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.74 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.69 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 97.67 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 97.62 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 97.58 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 97.56 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 97.51 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 97.49 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 97.49 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 97.47 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 97.45 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 97.41 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 97.37 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 97.28 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.27 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 97.24 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 97.23 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 97.23 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 97.21 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 97.2 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 97.2 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 97.18 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 97.16 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 97.1 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 97.09 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.07 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 97.06 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.05 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 97.05 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 97.05 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.02 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.01 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.98 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.98 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.98 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 96.98 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.94 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 96.94 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 96.93 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.86 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.84 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.84 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.81 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.75 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 96.74 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.73 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.71 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.71 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.69 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 96.68 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 96.66 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.62 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.57 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 96.54 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.44 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.43 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.4 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.39 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 96.38 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.35 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.32 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 96.29 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 96.26 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.25 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 96.21 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.15 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.12 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 96.11 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 96.06 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.03 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 96.02 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 96.01 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.99 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 95.96 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 95.9 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 95.82 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.81 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.8 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.76 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 95.76 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 95.64 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 95.6 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 95.51 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.42 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 95.26 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.13 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 95.12 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 94.87 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 94.86 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 94.81 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 94.66 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 94.61 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 94.55 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 94.51 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 94.49 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 94.34 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 94.17 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 94.12 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 93.88 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 93.69 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.63 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 93.59 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 93.35 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 93.17 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 92.95 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 92.91 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.22 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 92.18 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 91.77 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 91.76 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 91.69 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 91.59 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 91.57 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 91.52 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 91.36 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 91.21 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 91.04 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 90.95 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 90.89 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 90.57 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 90.41 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 90.35 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 90.19 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 90.18 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 89.55 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 89.23 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 89.21 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 88.79 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 88.51 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 88.44 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 88.19 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 88.12 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 87.86 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 87.76 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 87.49 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 87.26 | |
| 3nbm_A | 108 | PTS system, lactose-specific IIBC components; PTS_ | 87.21 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 87.18 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 87.07 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 87.01 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 86.95 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 86.8 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 86.77 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 86.63 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 86.08 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 85.89 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 85.82 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 85.51 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 85.5 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 85.37 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 85.07 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 85.01 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 84.83 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 84.77 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 84.65 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 84.55 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 84.44 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 84.43 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 84.3 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 84.15 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 83.35 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 83.31 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 83.09 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 82.53 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 81.97 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 81.86 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 81.52 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 81.21 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 81.04 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 80.78 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 80.78 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 80.77 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 80.62 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 80.41 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 80.4 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 80.07 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 80.06 |
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=198.36 Aligned_cols=202 Identities=47% Similarity=0.816 Sum_probs=174.7
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCCCCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCcc
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTG 80 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G 80 (215)
|+++|++.|++.+++|.++|..+||+.|.|.. +|.|.+++++.++.+++|.+...+++.+..++.++.+|||+|||+|
T Consensus 19 l~~~l~~~~~~~~~~~~~a~~~~~r~~f~~~~--~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G 96 (227)
T 1r18_A 19 LIRQLKDHGVIASDAVAQAMKETDRKHYSPRN--PYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSG 96 (227)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSC--TTBSSCEEEETTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTS
T ss_pred HHHHHHhcCCCCCHHHHHHHHhCCHHHcCCcc--cccCCCcccCCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCcc
Confidence 57899999988999999999999999999985 9999999999999999999999999988545788899999999999
Q ss_pred HHHHHHHHHhCC-----CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC
Q 028002 81 YLTACFALMVGP-----QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE 155 (215)
Q Consensus 81 ~~~~~l~~~~~~-----~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~ 155 (215)
..+..+++..+. .++|+++|+++.+++.+++++...+.. .+...++.+..+|....++..++||+|++...+++
T Consensus 97 ~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~ 175 (227)
T 1r18_A 97 YLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS-MLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPD 175 (227)
T ss_dssp HHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH-HHHHTSEEEEESCGGGCCGGGCSEEEEEECSCBSS
T ss_pred HHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcc-ccCCCceEEEECCcccCCCcCCCccEEEECCchHH
Confidence 999999987642 258999999999999999998765410 00015899999998875544468999999999999
Q ss_pred chHHHHHhcCCCcEEEEEeCC--CceeEEEEEEcCCCceEEEeeceEEEeec
Q 028002 156 IPQALIDQLKPGGRMVIPVGN--IFQDLKVVDKNQDGSLSIWSETSVRYVPL 205 (215)
Q Consensus 156 ~~~~~~~~Lk~gG~lv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 205 (215)
+++.+.+.|||||+++++++. ..+.+..+.+..++.|.....+.+.|+|+
T Consensus 176 ~~~~~~~~LkpgG~lvi~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~p~ 227 (227)
T 1r18_A 176 TPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 227 (227)
T ss_dssp CCHHHHHTEEEEEEEEEEESCSSSCEEEEEEEECTTSCEEEEEEEEECCCCC
T ss_pred HHHHHHHHhcCCCEEEEEEecCCCceEEEEEEEcCCCcEEEEEeccEEEeeC
Confidence 999999999999999999975 46778888887788999999999999996
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=196.43 Aligned_cols=203 Identities=36% Similarity=0.610 Sum_probs=174.6
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCCCCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCcc
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTG 80 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G 80 (215)
|+++|++.|++.++++.++|+.+||+.|.|+. .|.+.+++++.+..+..|.....+++.+..++.++.+|||+|||+|
T Consensus 15 ~~~~l~~~~~~~~~~v~~~~~~~~r~~f~p~~--~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G 92 (227)
T 2pbf_A 15 LLENLKRRGIIDDDDVYNTMLQVDRGKYIKEI--PYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSGSG 92 (227)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSS--TTSSSCEEEETTEEECCHHHHHHHHHHHTTTSCTTCEEEEESCTTS
T ss_pred HHHHHHhcCCcCCHHHHHHHHhCCHHHcCCcc--cCCCCccccCCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCCC
Confidence 68899999988999999999999999999985 8999999999999999999999988888545788899999999999
Q ss_pred HHHHHHHHHhC----CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCCCCccEEEEccC
Q 028002 81 YLTACFALMVG----PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAPYDAIHVGAA 152 (215)
Q Consensus 81 ~~~~~l~~~~~----~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~V~~~~~ 152 (215)
..+..+++..+ +..+|+++|+++.+++.+++++...+.. .....++.++.+|..... ...++||+|++...
T Consensus 93 ~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~ 171 (227)
T 2pbf_A 93 YLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPE-LLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGAS 171 (227)
T ss_dssp HHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGG-GGSSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSB
T ss_pred HHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcc-ccccCCEEEEECChHhcccccCccCCCcCEEEECCc
Confidence 99999999875 5569999999999999999998876420 001258999999988765 43478999999999
Q ss_pred CCCchHHHHHhcCCCcEEEEEeCC-CceeEEEEEEcCCCceEEEeeceEEEeeccc
Q 028002 153 APEIPQALIDQLKPGGRMVIPVGN-IFQDLKVVDKNQDGSLSIWSETSVRYVPLTS 207 (215)
Q Consensus 153 ~~~~~~~~~~~Lk~gG~lv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 207 (215)
.+++++.+.++|+|||+++++++. ..+.+..+.+ .++.|.....+.+.|+|+++
T Consensus 172 ~~~~~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pl~~ 226 (227)
T 2pbf_A 172 ASELPEILVDLLAENGKLIIPIEEDYTQVLYEITK-KNGKIIKDRLFDVCFVSLKK 226 (227)
T ss_dssp BSSCCHHHHHHEEEEEEEEEEEEETTEEEEEEEEC-SCC-CEEEEEEEECCCBCCC
T ss_pred hHHHHHHHHHhcCCCcEEEEEEccCCceEEEEEEE-eCCeEEEEEeccEEEEeccC
Confidence 999999999999999999999874 3566777777 68889999999999999985
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=192.93 Aligned_cols=197 Identities=37% Similarity=0.601 Sum_probs=175.8
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
|+++|+..| +.++++.++|..+||+.|.|+. ...|.+..++++.+..+..|.....+++.+. ..++.+|||+|||
T Consensus 11 ~~~~l~~~g-v~~~~~~~~~~~~~r~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~vLdiG~G 87 (210)
T 3lbf_A 11 LLDQLRAQG-IQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPYMVARMTELLE--LTPQSRVLEIGTG 87 (210)
T ss_dssp HHHHHHHTT-CCCHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECTTSCEECCHHHHHHHHHHTT--CCTTCEEEEECCT
T ss_pred HHHHHHHcC-CCCHHHHHHHHhCCHHHcCCcchhhhccCCCccccCCCCEeCCHHHHHHHHHhcC--CCCCCEEEEEcCC
Confidence 467899999 5899999999999999999884 7788998999999999999999999988886 7888999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchH
Q 028002 79 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQ 158 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~ 158 (215)
+|..+..+++.. .+++++|+++.+++.+++++...+. .++++..+|........++||+|+++..++++.+
T Consensus 88 ~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 158 (210)
T 3lbf_A 88 SGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDL------HNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPT 158 (210)
T ss_dssp TSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEEEESSBCSSCCT
T ss_pred CCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCC------CceEEEECCcccCCccCCCccEEEEccchhhhhH
Confidence 999999999883 7999999999999999999987654 5799999999876665578999999999999999
Q ss_pred HHHHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeecccCcc
Q 028002 159 ALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 210 (215)
Q Consensus 159 ~~~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 210 (215)
.+.++|+|||++++++++..+.+..+.+. .+.|......++.|+|++.+.+
T Consensus 159 ~~~~~L~pgG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~pl~~~~~ 209 (210)
T 3lbf_A 159 ALMTQLDEGGILVLPVGEEHQYLKRVRRR-GGEFIIDTVEAVRFVPLVKGEL 209 (210)
T ss_dssp HHHHTEEEEEEEEEEECSSSCEEEEEEEE-TTEEEEEEEEECCCCBCCCSSC
T ss_pred HHHHhcccCcEEEEEEcCCceEEEEEEEc-CCeEEEEEeccEEEEEccCccC
Confidence 99999999999999999977777777774 7889999999999999998764
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=190.06 Aligned_cols=212 Identities=53% Similarity=0.884 Sum_probs=178.5
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCCCCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCcc
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTG 80 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G 80 (215)
|+++|++.|++.++.+.++|..++|+.|.+.. .|.+.+.+.+.+..+..|.....+++.+..++.++.+|||+|||+|
T Consensus 12 l~~~l~~~g~~~~~~~~~a~~~~~r~~f~~~~--~y~~~~~~~~~~~~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G 89 (226)
T 1i1n_A 12 LIHNLRKNGIIKTDKVFEVMLATDRSHYAKCN--PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSG 89 (226)
T ss_dssp HHHHHHHTTSCCSHHHHHHHHTSCGGGTCSSC--TTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTS
T ss_pred HHHHHHHcCCcCCHHHHHHHHhCCHHHcCCCc--cCCCCccccCCCceecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcC
Confidence 47889999988999999999999999998875 8999999998888999999888888888645778899999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchHHH
Q 028002 81 YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQAL 160 (215)
Q Consensus 81 ~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~~~ 160 (215)
..+..+++.+++..+|+++|+++.+++.+++++...+.. .....++.+..+|........++||+|+++..++++++.+
T Consensus 90 ~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~ 168 (226)
T 1i1n_A 90 ILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT-LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQAL 168 (226)
T ss_dssp HHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH-HHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCHHH
T ss_pred HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccc-ccCCCcEEEEECCcccCcccCCCcCEEEECCchHHHHHHH
Confidence 999999998766679999999999999999988764320 0011589999999876554447899999999999999999
Q ss_pred HHhcCCCcEEEEEeCCC--ceeEEEEEEcCCCceEEEeeceEEEeecccCccccCCC
Q 028002 161 IDQLKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215 (215)
Q Consensus 161 ~~~Lk~gG~lv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 215 (215)
.++|||||+++++++.. .+.+..+.+..++.|.....+++.|+|++...++...|
T Consensus 169 ~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~~~~~~~~~ 225 (226)
T 1i1n_A 169 IDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRW 225 (226)
T ss_dssp HHTEEEEEEEEEEESCTTSCEEEEEEEECTTSCEEEEEEEEECCCBCCCHHHHCCCC
T ss_pred HHhcCCCcEEEEEEecCCCceEEEEEEEcCCCcEEEEEcCceEEEeccCCccccccc
Confidence 99999999999998764 35566777777889999999999999999875554443
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-28 Score=188.53 Aligned_cols=199 Identities=40% Similarity=0.633 Sum_probs=173.1
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
|++.|++.|.++++++.++|..++|+.|.|+. ...|.+.+.+++.+..+..|.+...+++.+. ..++.+|||+|||
T Consensus 24 l~~~l~~~~~~~~~~~~~a~~~v~r~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~vLdiG~G 101 (235)
T 1jg1_A 24 TVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNILEVGTG 101 (235)
T ss_dssp HHHHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHT--CCTTCCEEEECCT
T ss_pred HHHHHHhcCCCCCHHHHHHHHhCCHhhhCCchhhhcCccCCCcccCCCceeccHHHHHHHHHhcC--CCCCCEEEEEeCC
Confidence 57888867778999999999999999999886 6788999999999999999998999988886 7888999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchH
Q 028002 79 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQ 158 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~ 158 (215)
+|.++..+++..+ .+|+++|+++.+++.+++++...+. .++.+..+|....++...+||+|++...++++.+
T Consensus 102 ~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~ 173 (235)
T 1jg1_A 102 SGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGV------KNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPE 173 (235)
T ss_dssp TSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCH
T ss_pred cCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCC------CCcEEEECCcccCCCCCCCccEEEECCcHHHHHH
Confidence 9999999999864 7899999999999999999887654 4689999997554444356999999999999999
Q ss_pred HHHHhcCCCcEEEEEeCCCc--eeEEEEEEcCCCceEEEeeceEEEeecccCcc
Q 028002 159 ALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 210 (215)
Q Consensus 159 ~~~~~Lk~gG~lv~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 210 (215)
.+.+.|+|||++++++++.. +.+..+.+ .++.|.....+.+.|+|++...+
T Consensus 174 ~~~~~L~pgG~lvi~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~f~p~~~~~~ 226 (235)
T 1jg1_A 174 PLIEQLKIGGKLIIPVGSYHLWQELLEVRK-TKDGIKIKNHGGVAFVPLIGEYG 226 (235)
T ss_dssp HHHHTEEEEEEEEEEECSSSSCEEEEEEEE-ETTEEEEEEEEEECCCBCBSTTS
T ss_pred HHHHhcCCCcEEEEEEecCCCccEEEEEEE-eCCeEEEEEeccEEEEEccCCCc
Confidence 99999999999999998753 66667766 47889999999999999998754
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-28 Score=184.16 Aligned_cols=199 Identities=41% Similarity=0.689 Sum_probs=172.5
Q ss_pred Chhhh-hhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcC
Q 028002 1 MVEHL-QHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGS 77 (215)
Q Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~ 77 (215)
|+++| +..| +.+++|.++|+.+||+.|.++. ...|.+...+++.+..+..|.+...+++.+. ..++.+|||+||
T Consensus 10 ~~~~l~~~~~-~~~~~v~~a~~~~~r~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~ 86 (215)
T 2yxe_A 10 VIEKLIREGY-IKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLD--LKPGMKVLEIGT 86 (215)
T ss_dssp HHHHHHHHTS-CCCHHHHHHHHHSCGGGGSCGGGGGGTTSCSCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECC
T ss_pred HHHHhHHhcC-CCCHHHHHHHHhCCHHHcCCchhhhhcccCCCccCCCCcEeCcHHHHHHHHHhhC--CCCCCEEEEECC
Confidence 57888 7888 6999999999999999998875 6678898899999999999998888888875 788899999999
Q ss_pred CccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCch
Q 028002 78 GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIP 157 (215)
Q Consensus 78 G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~ 157 (215)
|+|..+..+++..++..+++++|+++.+++.+++++...+. .++.+..+|.....+..++||+|++...++++.
T Consensus 87 G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~ 160 (215)
T 2yxe_A 87 GCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY------DNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIP 160 (215)
T ss_dssp TTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEESCGGGCCGGGCCEEEEEESSBBSSCC
T ss_pred CccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCCCCCeeEEEECCchHHHH
Confidence 99999999999876667999999999999999999877654 478999999866555347899999999999999
Q ss_pred HHHHHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeecccCc
Q 028002 158 QALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 209 (215)
Q Consensus 158 ~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 209 (215)
+.+.++|||||++++++++..+.+..+.+. .+.|.....+++.|+|+++.-
T Consensus 161 ~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~ 211 (215)
T 2yxe_A 161 EPLIRQLKDGGKLLMPVGRYLQRLVLAEKR-GDEIIIKDCGPVAFVPLVGKE 211 (215)
T ss_dssp HHHHHTEEEEEEEEEEESSSSEEEEEEEEE-TTEEEEEEEEEECCCBCBSTT
T ss_pred HHHHHHcCCCcEEEEEECCCCcEEEEEEEe-CCEEEEEEeccEEEEeccccc
Confidence 999999999999999998765666677665 568988999999999998764
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=179.34 Aligned_cols=199 Identities=29% Similarity=0.470 Sum_probs=166.9
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCCC---CCCcCCCc-cccCC---cccchhHHHHHHHHHHHhcCCCCCEEE
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGT---PPYVDSPM-AIGYN---ATISAPHMHATCLQLLEENLKPGMHAL 73 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~y~~~~~-~~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~vL 73 (215)
|+++|++.| +.+ ++.++|..+||+.|.++.. ..|.+.+. +++.+ +....|.....+++.+. +.++.+||
T Consensus 5 ~~~~l~~~g-i~~-~v~~a~~~vpr~~fl~~~~~y~~~y~~~~~~~l~~~~f~q~~~~~~~~~~l~~~l~--~~~~~~VL 80 (317)
T 1dl5_A 5 LFWILKKYG-VSD-HIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVL 80 (317)
T ss_dssp HHHHHHHTT-CCH-HHHHHHHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTT--CCTTCEEE
T ss_pred HHHHHHHcC-ChH-HHHHHHHhCCHHHhCCchhccccCccCCCcccccCCCcceeccCHHHHHHHHHhcC--CCCcCEEE
Confidence 468899999 578 9999999999999998863 36778777 88888 77788888888888876 78899999
Q ss_pred EEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCC
Q 028002 74 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 74 diG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
|+|||+|.++..+++..+..++|+++|+++.+++.+++++...+. .++++..+|..+..+..++||+|++..++
T Consensus 81 DiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~ 154 (317)
T 1dl5_A 81 EIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------ENVIFVCGDGYYGVPEFSPYDVIFVTVGV 154 (317)
T ss_dssp EECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred EecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCeEEEECChhhccccCCCeEEEEEcCCH
Confidence 999999999999999864346799999999999999999887654 46999999988765544789999999999
Q ss_pred CCchHHHHHhcCCCcEEEEEeCCCc---eeEEEEEEcCCCceEEEeeceEEEeecccCcc
Q 028002 154 PEIPQALIDQLKPGGRMVIPVGNIF---QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 210 (215)
Q Consensus 154 ~~~~~~~~~~Lk~gG~lv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 210 (215)
+++.+.+.+.|||||+++++++... +.+..+.+. .+.|.....++..|+|.+++..
T Consensus 155 ~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~p~~~~~~ 213 (317)
T 1dl5_A 155 DEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK-DPYLVGNYKLETRFITAGGNLG 213 (317)
T ss_dssp SCCCHHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEEE-TTEEEEEEEEECCCCBCCGGGS
T ss_pred HHHHHHHHHhcCCCcEEEEEECCCCcccceEEEEEEe-CCcEEEEEeccEEEEEccCccc
Confidence 9999999999999999999987653 556666554 3578888888889999987654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=167.24 Aligned_cols=183 Identities=28% Similarity=0.420 Sum_probs=154.5
Q ss_pred CCHHHHHHHHhCcCcCCCCCC--CCCCc--CCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHH
Q 028002 12 TSKKVSEVMETIDRACFVPDG--TPPYV--DSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFA 87 (215)
Q Consensus 12 ~~~~~~~~~~~~~r~~~~~~~--~~~y~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~ 87 (215)
+++++.++|..+||+.|.++. ...|. +...+++.++.+..+.+...+++.+. ..++.+|||+|||+|..+..++
T Consensus 12 ~~~~v~~a~~~v~r~~f~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~ 89 (231)
T 1vbf_A 12 KTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALIA 89 (231)
T ss_dssp CCHHHHHHHHHSCHHHHSCGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHH
T ss_pred CCHHHHHHHHhCCHHHcCCcchhhhccccCCCceeeCCCCccCCHHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHH
Confidence 499999999999999998865 66788 88899998988889988888888876 7788999999999999999999
Q ss_pred HHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchHHHHHhcCCC
Q 028002 88 LMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPG 167 (215)
Q Consensus 88 ~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g 167 (215)
+.. .+++++|+++.+++.+++++... .++.++.+|.....+..++||+|++...++++.+.+.++|+||
T Consensus 90 ~~~---~~v~~vD~~~~~~~~a~~~~~~~--------~~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~L~pg 158 (231)
T 1vbf_A 90 EIV---DKVVSVEINEKMYNYASKLLSYY--------NNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEG 158 (231)
T ss_dssp HHS---SEEEEEESCHHHHHHHHHHHTTC--------SSEEEEESCGGGCCGGGCCEEEEEESSBBSSCCHHHHHTEEEE
T ss_pred HHc---CEEEEEeCCHHHHHHHHHHHhhc--------CCeEEEECCcccccccCCCccEEEECCcHHHHHHHHHHHcCCC
Confidence 884 79999999999999999887542 2789999998775444478999999999999999999999999
Q ss_pred cEEEEEeCCCc-eeEEEEEEcCCCceEEEeeceEEEeecccC
Q 028002 168 GRMVIPVGNIF-QDLKVVDKNQDGSLSIWSETSVRYVPLTSR 208 (215)
Q Consensus 168 G~lv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 208 (215)
|++++++++.. .....+.+ ..+.|......+..|.|+...
T Consensus 159 G~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 199 (231)
T 1vbf_A 159 GIMILPIGVGRVQKLYKVIK-KGNSPSLENLGEVMFGRIGGL 199 (231)
T ss_dssp EEEEEEECSSSSEEEEEEEC-CTTSCEEEEEEEECCCBCCST
T ss_pred cEEEEEEcCCCccEEEEEEE-cCCeeEEEEeccEEEEEcCCc
Confidence 99999988754 44444544 466777777777788887654
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=131.91 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=89.1
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC
Q 028002 60 QLLEENLKPGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 138 (215)
Q Consensus 60 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 138 (215)
..+...++++.+|||+|||+|..+..+++.++ ++.+|+|+|+|+.|++.|++++...+.. .+++++++|+.+..
T Consensus 62 ~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~-----~~v~~~~~D~~~~~ 136 (261)
T 4gek_A 62 MLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-----TPVDVIEGDIRDIA 136 (261)
T ss_dssp HHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCS-----SCEEEEESCTTTCC
T ss_pred HHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccC-----ceEEEeeccccccc
Confidence 33344578999999999999999999998764 3458999999999999999998876543 58999999988754
Q ss_pred CCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028002 139 PEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
. +.||+|++...++++ ++++.+.|||||.|++..
T Consensus 137 ~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 137 I--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp C--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence 3 569999999887654 357889999999999863
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-17 Score=122.97 Aligned_cols=118 Identities=22% Similarity=0.325 Sum_probs=98.9
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE
Q 028002 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 129 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~ 129 (215)
+...+...++..+. ..++.+|||+|||+|..+..+++. ++..+++++|+++.+++.+++++...+. .++++
T Consensus 24 ~~~~i~~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~ 94 (204)
T 3e05_A 24 TKQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNL-MPNGRIFALERNPQYLGFIRDNLKKFVA------RNVTL 94 (204)
T ss_dssp CCHHHHHHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHH-CTTSEEEEEECCHHHHHHHHHHHHHHTC------TTEEE
T ss_pred ChHHHHHHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEE
Confidence 55555677777776 788899999999999999999998 5668999999999999999999887654 58999
Q ss_pred EeCCCCCCCCCCCCccEEEEccCCC---CchHHHHHhcCCCcEEEEEeCC
Q 028002 130 HVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 130 ~~~d~~~~~~~~~~~D~V~~~~~~~---~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+.+|+.+.....+.||+|+++.... .+++.+.+.|+|||++++....
T Consensus 95 ~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 95 VEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp EECCTTTTCTTSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred EeCChhhhhhcCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence 9999977665547899999998764 3557889999999999997654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.9e-17 Score=122.13 Aligned_cols=119 Identities=24% Similarity=0.387 Sum_probs=99.0
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028002 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
.++.+.+...++..+. +.++.+|||+|||+|.++..+++. + .+|+++|+++.+++.|++++...+.. .++
T Consensus 37 ~~~~~~~~~~~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~-~--~~v~~vD~s~~~~~~a~~~~~~~g~~-----~~v 106 (204)
T 3njr_A 37 QITKSPMRALTLAALA--PRRGELLWDIGGGSGSVSVEWCLA-G--GRAITIEPRADRIENIQKNIDTYGLS-----PRM 106 (204)
T ss_dssp CCCCHHHHHHHHHHHC--CCTTCEEEEETCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTTCT-----TTE
T ss_pred CCCcHHHHHHHHHhcC--CCCCCEEEEecCCCCHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHHcCCC-----CCE
Confidence 4555666677777776 788899999999999999999987 3 79999999999999999998876652 389
Q ss_pred EEEeCCCCCCCCCCCCccEEEEccCCCC-chHHHHHhcCCCcEEEEEeCC
Q 028002 128 SVHVGDGRKGWPEFAPYDAIHVGAAAPE-IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 128 ~~~~~d~~~~~~~~~~~D~V~~~~~~~~-~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+++.+|+.+.......||+|+++..... +++.+.++|||||++++....
T Consensus 107 ~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 107 RAVQGTAPAALADLPLPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp EEEESCTTGGGTTSCCCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEECS
T ss_pred EEEeCchhhhcccCCCCCEEEECCcccHHHHHHHHHhcCCCcEEEEEecC
Confidence 9999999875544468999999876543 778899999999999998765
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.6e-17 Score=119.62 Aligned_cols=120 Identities=22% Similarity=0.288 Sum_probs=97.2
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028002 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
.++.+.+...+++.+. ..++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...+.. .++
T Consensus 7 ~~t~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~~ 78 (178)
T 3hm2_A 7 QLTKQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVS-----DRI 78 (178)
T ss_dssp CSHHHHHHHHHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCT-----TSE
T ss_pred cccHHHHHHHHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCC-----CCE
Confidence 3455556677777775 7788899999999999999999885 4589999999999999999998876542 378
Q ss_pred EEEeCCCCCCCCCC-CCccEEEEccCCCC--chHHHHHhcCCCcEEEEEeCC
Q 028002 128 SVHVGDGRKGWPEF-APYDAIHVGAAAPE--IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 128 ~~~~~d~~~~~~~~-~~~D~V~~~~~~~~--~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
++.+|..+.++.. ++||+|++...+++ +++.+.++|+|||++++....
T Consensus 79 -~~~~d~~~~~~~~~~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 79 -AVQQGAPRAFDDVPDNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp -EEECCTTGGGGGCCSCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEECS
T ss_pred -EEecchHhhhhccCCCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEeec
Confidence 8888876544433 78999999998876 788999999999999997654
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-17 Score=132.53 Aligned_cols=161 Identities=19% Similarity=0.249 Sum_probs=122.0
Q ss_pred HHHHHHHhCcCcCCCCCC-------CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHH
Q 028002 15 KVSEVMETIDRACFVPDG-------TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFA 87 (215)
Q Consensus 15 ~~~~~~~~~~r~~~~~~~-------~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~ 87 (215)
....++...+++.|.+.. ...|.+....+..+..+..|.....++..+. +.++.+|||+|||+|.++..++
T Consensus 47 ~~~~~ig~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la 124 (336)
T 2b25_A 47 PFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLS 124 (336)
T ss_dssp BHHHHTTCCTTEEEECTTSCEEEEECCCHHHHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHH
T ss_pred eHHHHcCCCCCceEEeCCCcEEEecCCCHHHHhhhhcCCCcccCHHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHH
Confidence 355667777777776654 3345555556777777888887888888886 8889999999999999999999
Q ss_pred HHhCCCCeEEEEecChHHHHHHHHHHHhhcc---cCcc--cCCCeEEEeCCCCCCCC--CCCCccEEEEccCCCC-chHH
Q 028002 88 LMVGPQGRAVGVEHIPELVVSSIQNIEKSAA---APLL--KEGSLSVHVGDGRKGWP--EFAPYDAIHVGAAAPE-IPQA 159 (215)
Q Consensus 88 ~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~--~~~~v~~~~~d~~~~~~--~~~~~D~V~~~~~~~~-~~~~ 159 (215)
+.+++..+++++|+++.+++.|++++...+. .+.+ ...++++..+|+.+... ..++||+|+++...+. +++.
T Consensus 125 ~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~~~l~~ 204 (336)
T 2b25_A 125 KAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPV 204 (336)
T ss_dssp HHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSSTTTTHHH
T ss_pred HHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccCCCCeeEEEECCCCHHHHHHH
Confidence 9877778999999999999999999876430 0000 01589999999887532 3357999999876554 5789
Q ss_pred HHHhcCCCcEEEEEeCCC
Q 028002 160 LIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 160 ~~~~Lk~gG~lv~~~~~~ 177 (215)
+.++|+|||.|++..++.
T Consensus 205 ~~~~LkpgG~lv~~~~~~ 222 (336)
T 2b25_A 205 FYPHLKHGGVCAVYVVNI 222 (336)
T ss_dssp HGGGEEEEEEEEEEESSH
T ss_pred HHHhcCCCcEEEEEeCCH
Confidence 999999999999987753
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.9e-17 Score=126.41 Aligned_cols=116 Identities=23% Similarity=0.256 Sum_probs=96.1
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE
Q 028002 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 129 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~ 129 (215)
..+.....+++.+. +.++.+|||+|||+|..+..+++..+ .+++++|+++.+++.+++++...+.. .++.+
T Consensus 20 ~~~~~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~-----~~v~~ 90 (256)
T 1nkv_A 20 FTEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVS-----ERVHF 90 (256)
T ss_dssp CCHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEE
T ss_pred CCHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCCC-----cceEE
Confidence 34445667777765 77889999999999999999998863 68999999999999999998876653 57999
Q ss_pred EeCCCCCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEeC
Q 028002 130 HVGDGRKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 130 ~~~d~~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~ 175 (215)
..+|+.+... .++||+|++...++++ ++++.++|||||++++..+
T Consensus 91 ~~~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 91 IHNDAAGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp EESCCTTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred EECChHhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence 9999987655 5889999998776554 5788999999999999654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-16 Score=122.97 Aligned_cols=121 Identities=26% Similarity=0.376 Sum_probs=100.8
Q ss_pred cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE
Q 028002 49 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 49 ~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
+.+|.....++..+. ..++.+|||+|||+|.++..+++.+++..+++++|+++.+++.|++++...+.. ++++
T Consensus 76 ~~~~~~~~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-----~~v~ 148 (255)
T 3mb5_A 76 IVHPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD-----DRVT 148 (255)
T ss_dssp CCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT-----TTEE
T ss_pred cccHhHHHHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC-----CceE
Confidence 345555666667665 788899999999999999999998766789999999999999999999887653 4599
Q ss_pred EEeCCCCCCCCCCCCccEEEEccCCC-CchHHHHHhcCCCcEEEEEeCCC
Q 028002 129 VHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 129 ~~~~d~~~~~~~~~~~D~V~~~~~~~-~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+..+|+.+..+. ++||+|+++.+.. .+++.+.++|+|||.+++..+..
T Consensus 149 ~~~~d~~~~~~~-~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 197 (255)
T 3mb5_A 149 IKLKDIYEGIEE-ENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPCS 197 (255)
T ss_dssp EECSCGGGCCCC-CSEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred EEECchhhccCC-CCcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEECCH
Confidence 999999876544 7899999987665 37899999999999999987653
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=119.69 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=88.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-CCCCCc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~ 144 (215)
+.++.+|||+|||+|..+..+++.+++.++++++|+++.+++.+++++...+.. .+++++.+|+.... ...++|
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~f 94 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI-----DRVTLIKDGHQNMDKYIDCPV 94 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG-----GGEEEECSCGGGGGGTCCSCE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CCeEEEECCHHHHhhhccCCc
Confidence 788899999999999999999998766679999999999999999999886543 58999999986643 223789
Q ss_pred cEEEEccCC---------------CCchHHHHHhcCCCcEEEEEeC
Q 028002 145 DAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 145 D~V~~~~~~---------------~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
|+|+++.++ ..+++.+.++|||||++++...
T Consensus 95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 999988754 1356788999999999998763
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=120.04 Aligned_cols=112 Identities=23% Similarity=0.296 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+. ..++.+|||+|||+|..+..+++..++..+++++|+++.+++.+++++...+. .++.+..+|+
T Consensus 26 ~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~ 97 (219)
T 3dh0_A 26 PEKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL------KNVEVLKSEE 97 (219)
T ss_dssp HHHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECBT
T ss_pred HHHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeccc
Confidence 356666665 77889999999999999999999876667999999999999999999887654 4799999999
Q ss_pred CCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEe
Q 028002 135 RKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~ 174 (215)
.......++||+|++...++++ ++++.++|+|||++++..
T Consensus 98 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 143 (219)
T 3dh0_A 98 NKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIID 143 (219)
T ss_dssp TBCSSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEE
Confidence 8765555789999999887654 467889999999999975
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-16 Score=122.68 Aligned_cols=114 Identities=22% Similarity=0.243 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
....++..+. .+.++.+|||+|||+|..+..+++.. + .+++++|+++.+++.+++++...+.. .+++++.+|
T Consensus 33 ~~~~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~d 104 (257)
T 3f4k_A 33 ATRKAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYV-K-GQITGIDLFPDFIEIFNENAVKANCA-----DRVKGITGS 104 (257)
T ss_dssp HHHHHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHC-C-SEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEECC
T ss_pred HHHHHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHcCCC-----CceEEEECC
Confidence 3455555553 36778899999999999999999985 3 49999999999999999999887654 469999999
Q ss_pred CCCCCCCCCCccEEEEccCCCCc-----hHHHHHhcCCCcEEEEEeC
Q 028002 134 GRKGWPEFAPYDAIHVGAAAPEI-----PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~~~-----~~~~~~~Lk~gG~lv~~~~ 175 (215)
+.......++||+|++...++++ ++.+.++|||||++++..+
T Consensus 105 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 105 MDNLPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp TTSCSSCTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhCCCCCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 97655455799999999888764 4678899999999999764
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-16 Score=123.72 Aligned_cols=127 Identities=21% Similarity=0.306 Sum_probs=103.5
Q ss_pred cCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh-c-ccCc
Q 028002 44 GYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-A-AAPL 121 (215)
Q Consensus 44 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~-~~~~ 121 (215)
..+..+.+|.....++..+. ..++.+|||+|||+|.++..+++.+++..+++++|+++.+++.+++++... + ..
T Consensus 77 ~~~~~~~~~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~-- 152 (280)
T 1i9g_A 77 PRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP-- 152 (280)
T ss_dssp CSCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC--
T ss_pred cccceeecHHHHHHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCC--
Confidence 33444556666777777776 788899999999999999999997666689999999999999999998775 3 21
Q ss_pred ccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC-CchHHHHHhcCCCcEEEEEeCCC
Q 028002 122 LKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 122 ~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~-~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.++.+..+|+.+.....++||+|+++.... .+++.+.++|+|||++++.+++.
T Consensus 153 ---~~v~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 153 ---DNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp ---TTEEEECSCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ---CcEEEEECchHhcCCCCCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 589999999877644447899999976654 67789999999999999988763
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-16 Score=123.63 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=90.2
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. +.++.+|||+|||+|..+..+++..+ .+|+++|+|+.+++.+++++...+.. .++++..+|+.
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~ 132 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSP-----RRKEVRIQGWE 132 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCS-----SCEEEEECCGG
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEECCHH
Confidence 33444443 67889999999999999999999864 78999999999999999998876653 58999999987
Q ss_pred CCCCCCCCccEEEEccCCCCc---------------hHHHHHhcCCCcEEEEEeC
Q 028002 136 KGWPEFAPYDAIHVGAAAPEI---------------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~---------------~~~~~~~Lk~gG~lv~~~~ 175 (215)
+. .++||+|++...++++ ++++.++|||||++++...
T Consensus 133 ~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 133 EF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp GC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred Hc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 65 3899999999887666 4678899999999998654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.68 E-value=8e-16 Score=115.23 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=92.6
Q ss_pred cchhHHHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028002 49 ISAPHMHATCLQLLEEN-LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 49 ~~~~~~~~~~l~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
.+...+...+++.+... ..++.+|||+|||+|.++..+++. +. .+|+++|+|+.+++.+++++...+. .++
T Consensus 24 p~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~------~~v 95 (189)
T 3p9n_A 24 PTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-GA-ASVLFVESDQRSAAVIARNIEALGL------SGA 95 (189)
T ss_dssp --CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEECCHHHHHHHHHHHHHHTC------SCE
T ss_pred cCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC-CC-CeEEEEECCHHHHHHHHHHHHHcCC------Cce
Confidence 34444566666666522 156789999999999999988775 32 6899999999999999999987654 589
Q ss_pred EEEeCCCCCCCC--CCCCccEEEEccCCCCc-------hHHHHH--hcCCCcEEEEEeCCC
Q 028002 128 SVHVGDGRKGWP--EFAPYDAIHVGAAAPEI-------PQALID--QLKPGGRMVIPVGNI 177 (215)
Q Consensus 128 ~~~~~d~~~~~~--~~~~~D~V~~~~~~~~~-------~~~~~~--~Lk~gG~lv~~~~~~ 177 (215)
+++++|+.+... ..++||+|+++.++... ++.+.+ +|+|||.+++..+..
T Consensus 96 ~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 96 TLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp EEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred EEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 999999876431 23789999999887763 245667 999999999987543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-16 Score=122.22 Aligned_cols=122 Identities=28% Similarity=0.403 Sum_probs=100.7
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh-cccCcccCCC
Q 028002 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGS 126 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~ 126 (215)
....+.....++..+. ..++.+|||+|||+|.++..+++.+++..+++++|+++.+++.+++++... +. .+
T Consensus 78 ~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~------~~ 149 (258)
T 2pwy_A 78 TPTYPKDASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV------EN 149 (258)
T ss_dssp CCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC------CC
T ss_pred ccccchHHHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC------CC
Confidence 3445555667777765 788899999999999999999998766689999999999999999998775 42 58
Q ss_pred eEEEeCCCCCCCCCCCCccEEEEccCCC-CchHHHHHhcCCCcEEEEEeCCC
Q 028002 127 LSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 127 v~~~~~d~~~~~~~~~~~D~V~~~~~~~-~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+.+..+|+.+.....++||+|+++.+.. .+++.+.++|+|||.+++..++.
T Consensus 150 v~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 150 VRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp EEEEESCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred EEEEECchhhcCCCCCCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 9999999887633337899999976654 67899999999999999988764
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-16 Score=115.68 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=84.2
Q ss_pred HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC
Q 028002 58 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 137 (215)
Q Consensus 58 ~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 137 (215)
....+...+.++.+|||+|||+|..+..+++. + .+|+++|+|+.+++.|++++...+. .+++++.++....
T Consensus 12 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~--~~v~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~~~~~l 82 (185)
T 3mti_A 12 SHDFLAEVLDDESIVVDATMGNGNDTAFLAGL-S--KKVYAFDVQEQALGKTSQRLSDLGI------ENTELILDGHENL 82 (185)
T ss_dssp HHHHHHTTCCTTCEEEESCCTTSHHHHHHHTT-S--SEEEEEESCHHHHHHHHHHHHHHTC------CCEEEEESCGGGG
T ss_pred HHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh-C--CEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCcHHHH
Confidence 33444445778999999999999999999987 3 8999999999999999999987654 5889998766542
Q ss_pred --CCCCCCccEEEEccC-CCC--------------chHHHHHhcCCCcEEEEEeCC
Q 028002 138 --WPEFAPYDAIHVGAA-APE--------------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 138 --~~~~~~~D~V~~~~~-~~~--------------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.. .++||+|+++.. ++. .++++.++|||||.+++.+..
T Consensus 83 ~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 83 DHYV-REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp GGTC-CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred Hhhc-cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 23 378999988732 221 236788999999999987643
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.67 E-value=5e-16 Score=121.92 Aligned_cols=109 Identities=20% Similarity=0.257 Sum_probs=90.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+|+.+++.+++++...+. .++.++.+|+
T Consensus 26 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~ 94 (260)
T 1vl5_A 26 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDA 94 (260)
T ss_dssp HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC
T ss_pred HHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCC------CceEEEEecH
Confidence 466677765 6788999999999999999999875 5999999999999999998877553 4799999999
Q ss_pred CCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEe
Q 028002 135 RKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~ 174 (215)
.......++||+|++...++++ ++++.++|||||++++..
T Consensus 95 ~~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 95 EQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp -CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhCCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 8755455799999999887654 467899999999999863
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.67 E-value=9.3e-16 Score=117.25 Aligned_cols=118 Identities=15% Similarity=0.121 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
....+++.+. ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++...+... ....++++..+|
T Consensus 17 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~v~~~~~d 92 (217)
T 3jwh_A 17 RMNGVVAALK--QSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPR-NQWERLQLIQGA 92 (217)
T ss_dssp HHHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCH-HHHTTEEEEECC
T ss_pred HHHHHHHHHH--hcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCc-ccCcceEEEeCC
Confidence 4556666665 5677899999999999999999874 54799999999999999999886544310 001279999999
Q ss_pred CCCCCCCCCCccEEEEccCCCCch--------HHHHHhcCCCcEEEEEeC
Q 028002 134 GRKGWPEFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~~ 175 (215)
+.......++||+|++...++++. +++.++|||||.++++.+
T Consensus 93 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 93 LTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp TTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred cccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 865444447899999998876544 467899999997776543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=125.52 Aligned_cols=102 Identities=18% Similarity=0.125 Sum_probs=83.1
Q ss_pred HHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC
Q 028002 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 138 (215)
Q Consensus 59 l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 138 (215)
++.+......+.+|||+|||+|..+..+++.+ .+|+|+|+|+.|++.|++ ..++.++++++.+..
T Consensus 30 ~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~------------~~~v~~~~~~~e~~~ 94 (257)
T 4hg2_A 30 FRWLGEVAPARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALR------------HPRVTYAVAPAEDTG 94 (257)
T ss_dssp HHHHHHHSSCSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCC------------CTTEEEEECCTTCCC
T ss_pred HHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhh------------cCCceeehhhhhhhc
Confidence 34444345566899999999999999999874 789999999999987653 158999999998876
Q ss_pred CCCCCccEEEEccCCCCc-----hHHHHHhcCCCcEEEEEeC
Q 028002 139 PEFAPYDAIHVGAAAPEI-----PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~-----~~~~~~~Lk~gG~lv~~~~ 175 (215)
...++||+|++...++++ +.++.++|||||.|++...
T Consensus 95 ~~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 95 LPPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp CCSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEEC
Confidence 666899999999988763 3678999999999988653
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-16 Score=122.63 Aligned_cols=113 Identities=22% Similarity=0.215 Sum_probs=92.9
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+. .+.++.+|||+|||+|..+..+++. +..+++++|+|+.+++.+++++...+.. ++++++.+|+
T Consensus 34 ~~~~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~ 105 (267)
T 3kkz_A 34 TLKALSFID-NLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQ-----NRVTGIVGSM 105 (267)
T ss_dssp HHHHHTTCC-CCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEECCT
T ss_pred HHHHHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCC-----cCcEEEEcCh
Confidence 444555543 3577899999999999999999987 3369999999999999999999887654 5799999999
Q ss_pred CCCCCCCCCccEEEEccCCCCc-----hHHHHHhcCCCcEEEEEeC
Q 028002 135 RKGWPEFAPYDAIHVGAAAPEI-----PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~~-----~~~~~~~Lk~gG~lv~~~~ 175 (215)
.+.....++||+|++...++++ ++.+.++|||||++++..+
T Consensus 106 ~~~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 106 DDLPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp TSCCCCTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred hhCCCCCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence 8765455799999999887654 4678899999999999764
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=119.84 Aligned_cols=113 Identities=15% Similarity=0.042 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc------CcccCCCeE
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA------PLLKEGSLS 128 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------~~~~~~~v~ 128 (215)
+..++..+. +.++.+|||+|||+|..+..+++. | .+|+|+|+|+.+++.|+++....... ......+++
T Consensus 11 l~~~~~~l~--~~~~~~vLD~GCG~G~~~~~la~~-g--~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~ 85 (203)
T 1pjz_A 11 LQQYWSSLN--VVPGARVLVPLCGKSQDMSWLSGQ-G--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE 85 (203)
T ss_dssp HHHHHHHHC--CCTTCEEEETTTCCSHHHHHHHHH-C--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred HHHHHHhcc--cCCCCEEEEeCCCCcHhHHHHHHC-C--CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccE
Confidence 344455554 667899999999999999999988 4 68999999999999998875421000 000125789
Q ss_pred EEeCCCCCCCCCC-CCccEEEEccCCCCc--------hHHHHHhcCCCcEEEE
Q 028002 129 VHVGDGRKGWPEF-APYDAIHVGAAAPEI--------PQALIDQLKPGGRMVI 172 (215)
Q Consensus 129 ~~~~d~~~~~~~~-~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~ 172 (215)
++++|+.+..... ++||+|++...+.++ ++++.++|||||++++
T Consensus 86 ~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l 138 (203)
T 1pjz_A 86 IWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL 138 (203)
T ss_dssp EEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred EEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 9999998765443 689999988776554 3568899999998444
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8e-16 Score=119.47 Aligned_cols=112 Identities=21% Similarity=0.266 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028002 53 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 53 ~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
.....+++.+. +.++.+|||+|||+|..+..+++.. .+++++|+++.+++.+++++...+. .++.++.+
T Consensus 8 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~ 76 (239)
T 1xxl_A 8 HSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGV------ENVRFQQG 76 (239)
T ss_dssp HHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTC------CSEEEEEC
T ss_pred CCcchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC------CCeEEEec
Confidence 34667777776 8889999999999999999998874 5899999999999999999877654 47999999
Q ss_pred CCCCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEeC
Q 028002 133 DGRKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 133 d~~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~ 175 (215)
|+.......++||+|++...++++ +.++.++|||||++++...
T Consensus 77 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 77 TAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp BTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccCCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 987755455789999999877553 4678999999999999643
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=122.13 Aligned_cols=115 Identities=21% Similarity=0.111 Sum_probs=93.9
Q ss_pred HHHHHHHHHH--hcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe
Q 028002 54 MHATCLQLLE--ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 131 (215)
Q Consensus 54 ~~~~~l~~l~--~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~ 131 (215)
....++..+. ..+.++.+|||+|||+|..+..+++..+ .+++++|+++.+++.+++++...+.. .++.++.
T Consensus 66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~~~~~~ 138 (297)
T 2o57_A 66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLA-----DNITVKY 138 (297)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCT-----TTEEEEE
T ss_pred HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCC-----cceEEEE
Confidence 3455666651 0267889999999999999999998863 58999999999999999998776653 5799999
Q ss_pred CCCCCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEeC
Q 028002 132 GDGRKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 132 ~d~~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~ 175 (215)
+|+.......++||+|++...++++ ++++.++|||||++++..+
T Consensus 139 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 139 GSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp CCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCcccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9998765555789999999887654 5688999999999999754
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=120.09 Aligned_cols=111 Identities=21% Similarity=0.256 Sum_probs=91.3
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. +.++.+|||+|||+|..+..+++..+ .+++++|+|+.+++.+++++...+.. +++.+..+|+.
T Consensus 51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~d~~ 121 (273)
T 3bus_A 51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANARATAAGLA-----NRVTFSYADAM 121 (273)
T ss_dssp HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHSC--CEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEECCTT
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHhcCCC-----cceEEEECccc
Confidence 34444443 56789999999999999999998753 79999999999999999998876543 57999999998
Q ss_pred CCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEeC
Q 028002 136 KGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~ 175 (215)
......++||+|++...++++ ++++.++|||||++++...
T Consensus 122 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 122 DLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp SCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 765555789999999988765 3678899999999998753
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=120.50 Aligned_cols=104 Identities=22% Similarity=0.172 Sum_probs=85.0
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.+.++.+|||+|||+|.++..++... +..+|+++|+++.+++.|++++...+. .+++++.+|+.+. + .++|
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl------~~v~~v~gDa~~l-~-d~~F 189 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGV------DGVNVITGDETVI-D-GLEF 189 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTC------CSEEEEESCGGGG-G-GCCC
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCC------CCeEEEECchhhC-C-CCCc
Confidence 37889999999999987765544332 347999999999999999999987654 5899999998774 3 4789
Q ss_pred cEEEEccCCC---CchHHHHHhcCCCcEEEEEeCCC
Q 028002 145 DAIHVGAAAP---EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~~---~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|+|++..... .+++++.++|||||+|++...+.
T Consensus 190 DvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~~ 225 (298)
T 3fpf_A 190 DVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTYTG 225 (298)
T ss_dssp SEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEECCG
T ss_pred CEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcCcc
Confidence 9999877654 46788999999999999976544
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=116.95 Aligned_cols=120 Identities=15% Similarity=0.181 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe
Q 028002 52 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 131 (215)
Q Consensus 52 ~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~ 131 (215)
+.....+++.+. ..++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.+++++...+... ....++++..
T Consensus 15 ~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~v~~~~ 90 (219)
T 3jwg_A 15 QQRLGTVVAVLK--SVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPE-MQRKRISLFQ 90 (219)
T ss_dssp HHHHHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCH-HHHTTEEEEE
T ss_pred HHHHHHHHHHHh--hcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhcccc-ccCcceEEEe
Confidence 334555666665 4667899999999999999999874 55799999999999999999887654320 0012799999
Q ss_pred CCCCCCCCCCCCccEEEEccCCCCch--------HHHHHhcCCCcEEEEEeC
Q 028002 132 GDGRKGWPEFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 132 ~d~~~~~~~~~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~~ 175 (215)
+|+.......++||+|++...++++. +++.++|||||.++.+..
T Consensus 91 ~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 91 SSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp CCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred CcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence 99865544447899999998876654 457899999996665433
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-15 Score=114.63 Aligned_cols=103 Identities=15% Similarity=0.207 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCCc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~ 144 (215)
.++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|++++...+. .++.++.+|+.... ...++|
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~ 112 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSDLTDYFEDGEI 112 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSCGGGTSCTTCC
T ss_pred CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCC------CCEEEEeCCHHHHHhhcCCCCC
Confidence 457899999999999999999984 568999999999999999999887654 58999999987633 334789
Q ss_pred cEEEEccCCC--------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 145 DAIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~--------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+|+++.+.+ .+++.+.++|+|||.+++.+.+
T Consensus 113 D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (214)
T 1yzh_A 113 DRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 158 (214)
T ss_dssp SEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred CEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9999987754 3667889999999999998865
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.9e-16 Score=118.29 Aligned_cols=102 Identities=24% Similarity=0.386 Sum_probs=85.2
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC---CCCC
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WPEF 141 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~ 141 (215)
.++||++|||+|||+|..+..+++..|+.++|+++|+++.+++.+++++... .++..+.++.... ....
T Consensus 74 ~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--------~ni~~V~~d~~~p~~~~~~~ 145 (233)
T 4df3_A 74 PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--------RNIFPILGDARFPEKYRHLV 145 (233)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--------TTEEEEESCTTCGGGGTTTC
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--------cCeeEEEEeccCcccccccc
Confidence 3799999999999999999999999999999999999999999998876442 5888898887642 2233
Q ss_pred CCccEEEEccCCCC----chHHHHHhcCCCcEEEEEe
Q 028002 142 APYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 142 ~~~D~V~~~~~~~~----~~~~~~~~Lk~gG~lv~~~ 174 (215)
+.+|+|+++...+. ++.++.+.|||||.+++++
T Consensus 146 ~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 146 EGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp CCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 68999998877664 4467789999999999864
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=116.36 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe
Q 028002 52 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 131 (215)
Q Consensus 52 ~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~ 131 (215)
+.+...+++.+. ..++ +|||+|||+|..+..+++. +..+++++|+++.+++.+++++...+.. .++++..
T Consensus 30 ~~~~~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~-----~~~~~~~ 99 (219)
T 3dlc_A 30 PIIAENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLN-----DRIQIVQ 99 (219)
T ss_dssp HHHHHHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEE
T ss_pred HHHHHHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhcccc-----CceEEEE
Confidence 334555555554 4555 9999999999999999987 2379999999999999999998876653 5899999
Q ss_pred CCCCCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEe
Q 028002 132 GDGRKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 132 ~d~~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+.......++||+|++...++++ ++++.++|+|||.+++..
T Consensus 100 ~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 100 GDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp CBTTBCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCHHHCCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEe
Confidence 9998755555799999999887653 467899999999999974
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-15 Score=118.75 Aligned_cols=119 Identities=24% Similarity=0.370 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028002 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
.|.....++..+. +.++.+|||+|||+|.++..+++.+++..+++++|+++.+++.+++++...+.. .++.+.
T Consensus 97 ~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~v~~~ 169 (277)
T 1o54_A 97 YPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI-----ERVTIK 169 (277)
T ss_dssp CHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG-----GGEEEE
T ss_pred CHHHHHHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-----CCEEEE
Confidence 3444556666665 778899999999999999999998666689999999999999999998876543 478999
Q ss_pred eCCCCCCCCCCCCccEEEEccCCC-CchHHHHHhcCCCcEEEEEeCCC
Q 028002 131 VGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 131 ~~d~~~~~~~~~~~D~V~~~~~~~-~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.+|+.+..+. +.||+|+++.+.. .+++.+.++|+|||++++..+..
T Consensus 170 ~~d~~~~~~~-~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (277)
T 1o54_A 170 VRDISEGFDE-KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTT 216 (277)
T ss_dssp CCCGGGCCSC-CSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred ECCHHHcccC-CccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 9998776443 6899999987655 67789999999999999988753
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=117.94 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028002 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
.+.....+...+. ..++.+|||+|||+|..+..+++. .+..+|+++|+++.+++.|++++...+.. ++++++
T Consensus 56 ~~~~~~~l~~~~~--~~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~ 127 (232)
T 3ntv_A 56 DRLTLDLIKQLIR--MNNVKNILEIGTAIGYSSMQFASI-SDDIHVTTIERNETMIQYAKQNLATYHFE-----NQVRII 127 (232)
T ss_dssp CHHHHHHHHHHHH--HHTCCEEEEECCSSSHHHHHHHTT-CTTCEEEEEECCHHHHHHHHHHHHHTTCT-----TTEEEE
T ss_pred CHHHHHHHHHHHh--hcCCCEEEEEeCchhHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEE
Confidence 4444444444444 456789999999999999999985 35589999999999999999999887653 589999
Q ss_pred eCCCCCCCC-C-CCCccEEEEccCCCCc---hHHHHHhcCCCcEEEE
Q 028002 131 VGDGRKGWP-E-FAPYDAIHVGAAAPEI---PQALIDQLKPGGRMVI 172 (215)
Q Consensus 131 ~~d~~~~~~-~-~~~~D~V~~~~~~~~~---~~~~~~~Lk~gG~lv~ 172 (215)
.+|+.+..+ . .++||+|+++...... ++.+.++|+|||+|++
T Consensus 128 ~~d~~~~~~~~~~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 128 EGNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp ESCGGGCHHHHTTSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEE
T ss_pred ECCHHHHHHhhccCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEE
Confidence 999977544 1 3789999999877654 4677899999999988
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=119.58 Aligned_cols=112 Identities=21% Similarity=0.337 Sum_probs=90.0
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh-cccCcccCCCeEEEeCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~v~~~~~d~~ 135 (215)
.++..+. ..++.+|||+|||+|..+..+++.+++..+++++|+++.+++.+++++... +. .++++..+|+.
T Consensus 101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~------~~v~~~~~d~~ 172 (275)
T 1yb2_A 101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI------GNVRTSRSDIA 172 (275)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC------TTEEEECSCTT
T ss_pred HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC------CcEEEEECchh
Confidence 3444443 677899999999999999999988555589999999999999999998765 42 58999999998
Q ss_pred CCCCCCCCccEEEEccCCC-CchHHHHHhcCCCcEEEEEeCCC
Q 028002 136 KGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~-~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+..+. ++||+|+++.+.. .+++.+.+.|+|||++++.+++.
T Consensus 173 ~~~~~-~~fD~Vi~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 173 DFISD-QMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp TCCCS-CCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred ccCcC-CCccEEEEcCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 74443 7899999966543 57789999999999999988764
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-15 Score=119.16 Aligned_cols=101 Identities=22% Similarity=0.135 Sum_probs=84.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+.++.+|||+|||+|..+..+++..+ .+|+++|+|+.+++.+++++...+.. .++.+..+|+.... ++||
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~-----~~~~~~~~d~~~~~---~~fD 131 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENL-----RSKRVLLAGWEQFD---EPVD 131 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCC-----SCEEEEESCGGGCC---CCCS
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCC-----CCeEEEECChhhCC---CCee
Confidence 56788999999999999999997654 59999999999999999988765543 58999999986542 7899
Q ss_pred EEEEccCCCCc--------hHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAPEI--------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++...++++ ++++.++|||||++++..+.
T Consensus 132 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 132 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred EEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 99999877655 36788999999999997644
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-15 Score=121.97 Aligned_cols=123 Identities=20% Similarity=0.196 Sum_probs=99.1
Q ss_pred cccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCC
Q 028002 47 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 126 (215)
Q Consensus 47 ~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~ 126 (215)
.....+.+...++.... ..++.+|||+|||+|.++..++...++..+++|+|+++.+++.|++++...+. .+
T Consensus 184 ~a~l~~~la~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~------~~ 255 (354)
T 3tma_A 184 RGSLTPVLAQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL------SW 255 (354)
T ss_dssp SCSCCHHHHHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC------TT
T ss_pred CCCcCHHHHHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC------Cc
Confidence 33445555566666654 67789999999999999999999865668999999999999999999988664 37
Q ss_pred eEEEeCCCCCCCCCCCCccEEEEccCCCC--------------chHHHHHhcCCCcEEEEEeCCC
Q 028002 127 LSVHVGDGRKGWPEFAPYDAIHVGAAAPE--------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 127 v~~~~~d~~~~~~~~~~~D~V~~~~~~~~--------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+++.++|+.+.....+.||+|++++++.. +.+.+.++|+|||.+++.+++.
T Consensus 256 i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~ 320 (354)
T 3tma_A 256 IRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP 320 (354)
T ss_dssp CEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred eEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 99999999876554467999999987632 3356788999999999998875
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=118.30 Aligned_cols=104 Identities=17% Similarity=0.064 Sum_probs=79.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhc------ccCc-----ccCCCeEEEeCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA------AAPL-----LKEGSLSVHVGDG 134 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~------~~~~-----~~~~~v~~~~~d~ 134 (215)
..++.+|||+|||+|..+..+++. | .+|+|+|+|+.+++.|+++..... .... -...++++.++|+
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~-G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~ 142 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADR-G--HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI 142 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT-T--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHC-C--CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence 357789999999999999999987 4 689999999999999977643100 0000 0115799999999
Q ss_pred CCCCCCC-CCccEEEEccCCCCc--------hHHHHHhcCCCcEEEE
Q 028002 135 RKGWPEF-APYDAIHVGAAAPEI--------PQALIDQLKPGGRMVI 172 (215)
Q Consensus 135 ~~~~~~~-~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~ 172 (215)
.+..... ++||+|++...+.++ ++++.++|||||++++
T Consensus 143 ~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l 189 (252)
T 2gb4_A 143 FDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLV 189 (252)
T ss_dssp TTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred ccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 8765432 789999988777554 3568899999999964
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-15 Score=114.08 Aligned_cols=106 Identities=23% Similarity=0.196 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+. ..++.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++. .++.+..+|+
T Consensus 34 ~~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~~----------~~~~~~~~d~ 98 (220)
T 3hnr_A 34 YEDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA-G--RTVYGIEPSREMRMIAKEKLP----------KEFSITEGDF 98 (220)
T ss_dssp HHHHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT-T--CEEEEECSCHHHHHHHHHHSC----------TTCCEESCCS
T ss_pred HHHHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC-C--CeEEEEeCCHHHHHHHHHhCC----------CceEEEeCCh
Confidence 356667665 557889999999999999999987 3 799999999999999987653 3788999999
Q ss_pred CCCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEEeCC
Q 028002 135 RKGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
...... ++||+|++...+++ +++++.++|||||.+++..+.
T Consensus 99 ~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 99 LSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp SSCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred hhcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 876555 89999999988765 446788999999999998543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.3e-16 Score=120.37 Aligned_cols=109 Identities=21% Similarity=0.192 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+. ..++.+|||+|||+|..+..+++.++ .+|+++|+|+.+++.+++++... .+++++.+|+
T Consensus 44 ~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~ 111 (266)
T 3ujc_A 44 TKKILSDIE--LNENSKVLDIGSGLGGGCMYINEKYG--AHTHGIDICSNIVNMANERVSGN--------NKIIFEANDI 111 (266)
T ss_dssp HHHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHTCCSC--------TTEEEEECCT
T ss_pred HHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhhcC--------CCeEEEECcc
Confidence 444455443 67788999999999999999999863 79999999999999998765431 5899999999
Q ss_pred CCCCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEeC
Q 028002 135 RKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~~ 175 (215)
.......++||+|++...++++ ++++.++|||||.+++..+
T Consensus 112 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 112 LTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp TTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 8765555899999999988877 4678999999999999754
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=111.81 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=97.0
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE
Q 028002 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 129 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~ 129 (215)
..|.....++..+. ..++.+|||+|||+|.++..+++. + .+++++|+++.+++.+++++...+.. .++++
T Consensus 75 ~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~~~~ 144 (248)
T 2yvl_A 75 IYPKDSFYIALKLN--LNKEKRVLEFGTGSGALLAVLSEV-A--GEVWTFEAVEEFYKTAQKNLKKFNLG-----KNVKF 144 (248)
T ss_dssp CCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH-S--SEEEEECSCHHHHHHHHHHHHHTTCC-----TTEEE
T ss_pred ccchhHHHHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh-C--CEEEEEecCHHHHHHHHHHHHHcCCC-----CcEEE
Confidence 34555556666654 678899999999999999999988 3 79999999999999999998776543 57899
Q ss_pred EeCCCCCCCCCCCCccEEEEccCCC-CchHHHHHhcCCCcEEEEEeCCC
Q 028002 130 HVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 130 ~~~d~~~~~~~~~~~D~V~~~~~~~-~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
..+|+.+.....+.||+|+++.+.. .+++.+.++|+|||.+++.+++.
T Consensus 145 ~~~d~~~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 145 FNVDFKDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp ECSCTTTSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred EEcChhhcccCCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 9999887652336899999987655 67889999999999999998864
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=116.84 Aligned_cols=104 Identities=16% Similarity=0.171 Sum_probs=86.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---CCCCC
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~ 143 (215)
.++.+|||+|||+|..+..+++.. +...|+|+|+++.+++.|++++...+. .++.++.+|+.+.+ ...++
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l------~nv~~~~~Da~~~l~~~~~~~~ 105 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGL------SNLRVMCHDAVEVLHKMIPDNS 105 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTC------SSEEEECSCHHHHHHHHSCTTC
T ss_pred CCCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHcCCCC
Confidence 467899999999999999999984 668999999999999999999887654 58999999987641 23479
Q ss_pred ccEEEEccCCC--------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 144 YDAIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 144 ~D~V~~~~~~~--------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
||.|++..+.+ .+++.+.++|||||.|++.+...
T Consensus 106 ~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~ 153 (218)
T 3dxy_A 106 LRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE 153 (218)
T ss_dssp EEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred hheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCH
Confidence 99999884432 26678899999999999988754
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=116.74 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=88.9
Q ss_pred HHHHHHHHHhcC--CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028002 55 HATCLQLLEENL--KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 55 ~~~~l~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
...++..+.... +++.+|||+|||+|..+..+++.+++.++++++|+++.+++.|++++...+.. .++++++.+
T Consensus 41 ~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~----~~~i~~~~g 116 (221)
T 3dr5_A 41 TGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS----PSRVRFLLS 116 (221)
T ss_dssp HHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC----GGGEEEECS
T ss_pred HHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----cCcEEEEEc
Confidence 344445443222 23349999999999999999998766689999999999999999999876641 137999999
Q ss_pred CCCCCCCC--CCCccEEEEccCCCC---chHHHHHhcCCCcEEEE
Q 028002 133 DGRKGWPE--FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 133 d~~~~~~~--~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~ 172 (215)
|+.+..+. .++||+|+++..... +++.+.++|||||++++
T Consensus 117 da~~~l~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 117 RPLDVMSRLANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVL 161 (221)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHhcCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEE
Confidence 98654321 378999999987665 45678899999999998
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=117.28 Aligned_cols=111 Identities=20% Similarity=0.305 Sum_probs=90.4
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC
Q 028002 60 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 139 (215)
Q Consensus 60 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 139 (215)
+.+...++++.+|||+|||+|.+++.+++. ++..+|+++|+++.+++.|++++..++.. +++++..+|..+..+
T Consensus 7 ~~l~~~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~-----~~i~~~~~d~l~~l~ 80 (225)
T 3kr9_A 7 ELVASFVSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLK-----EKIQVRLANGLAAFE 80 (225)
T ss_dssp HHHHTTSCTTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCT-----TTEEEEECSGGGGCC
T ss_pred HHHHHhCCCCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEEECchhhhcc
Confidence 444445788899999999999999999987 56679999999999999999999998865 579999999977665
Q ss_pred CCCCccEEEEccCC----CCchHHHHHhcCCCcEEEEEeCC
Q 028002 140 EFAPYDAIHVGAAA----PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 140 ~~~~~D~V~~~~~~----~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
..++||+|+..+.- ..+++.....|+++|+|++....
T Consensus 81 ~~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~~ 121 (225)
T 3kr9_A 81 ETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPNN 121 (225)
T ss_dssp GGGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEESS
T ss_pred cCcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 42379988765543 44556777899999999996543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-15 Score=114.63 Aligned_cols=102 Identities=23% Similarity=0.373 Sum_probs=84.0
Q ss_pred cCCCCCEEEEEcCC-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC--CCCCC
Q 028002 65 NLKPGMHALDIGSG-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GWPEF 141 (215)
Q Consensus 65 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~ 141 (215)
.+.++.+|||+||| +|.++..+++.. ..+|+++|+++.+++.|++++...+. +++++.+|+.. ..+.
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-------~v~~~~~d~~~~~~~~~- 121 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS-------NVRLVKSNGGIIKGVVE- 121 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC-------CCEEEECSSCSSTTTCC-
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC-------CcEEEeCCchhhhhccc-
Confidence 36788999999999 999999999885 27999999999999999999887542 78999999643 2333
Q ss_pred CCccEEEEccCCC-------------------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 142 APYDAIHVGAAAP-------------------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 142 ~~~D~V~~~~~~~-------------------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
++||+|+++.++. .+++.+.++|||||++++.++.
T Consensus 122 ~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (230)
T 3evz_A 122 GTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD 181 (230)
T ss_dssp SCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred CceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 7899999997752 3456788999999999997654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-15 Score=123.73 Aligned_cols=114 Identities=19% Similarity=0.211 Sum_probs=91.3
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+++.+. ..++.+|||+|||+|.++..+++. ++..+|+++|+|+.+++.+++++..++... ..++++..+|+.+
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~-~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~---~~~v~~~~~D~~~ 286 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDK-NPQAKVVFVDESPMAVASSRLNVETNMPEA---LDRCEFMINNALS 286 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHHCGGG---GGGEEEEECSTTT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHH-CCCCEEEEEECcHHHHHHHHHHHHHcCCCc---CceEEEEechhhc
Confidence 3455543 445689999999999999999998 456899999999999999999998876431 1268889999988
Q ss_pred CCCCCCCccEEEEccCCCC-----------chHHHHHhcCCCcEEEEEeCCC
Q 028002 137 GWPEFAPYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~-----------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
..+. ++||+|+++.+++. +++.+.++|||||.+++.++..
T Consensus 287 ~~~~-~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~ 337 (375)
T 4dcm_A 287 GVEP-FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH 337 (375)
T ss_dssp TCCT-TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred cCCC-CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence 6554 78999999988752 4578899999999999987654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-15 Score=113.98 Aligned_cols=104 Identities=16% Similarity=0.252 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCCc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~ 144 (215)
.++.+|||+|||+|..+..+++.. +..+++|+|+|+.+++.|++++...+. .++.++.+|+.... ...+.|
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~------~nv~~~~~d~~~l~~~~~~~~~ 109 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADTLTDVFEPGEV 109 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGGHHHHCCTTSC
T ss_pred CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCC------CCEEEEeCCHHHHHhhcCcCCc
Confidence 456899999999999999999984 568999999999999999999887554 57999999987632 233789
Q ss_pred cEEEEccCCC--------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 145 DAIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~~--------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|.|++..+.+ .+++.+.++|+|||.|++.+.+.
T Consensus 110 d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~ 156 (213)
T 2fca_A 110 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR 156 (213)
T ss_dssp CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH
T ss_pred CEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 9998875432 24678899999999999988653
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-15 Score=113.44 Aligned_cols=100 Identities=20% Similarity=0.161 Sum_probs=78.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC---CCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WPEFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~ 142 (215)
+.++.+|||+|||+|..+..+++.++ .++|+|+|+|+.+++.+.+..... .++.++.+|.... .+..+
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~--------~~v~~~~~d~~~~~~~~~~~~ 125 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER--------NNIIPLLFDASKPWKYSGIVE 125 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC--------SSEEEECSCTTCGGGTTTTCC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC--------CCeEEEEcCCCCchhhccccc
Confidence 56789999999999999999999865 579999999999887666654431 4788888887653 22227
Q ss_pred CccEEEEccCCCC----chHHHHHhcCCCcEEEEEe
Q 028002 143 PYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 143 ~~D~V~~~~~~~~----~~~~~~~~Lk~gG~lv~~~ 174 (215)
+||+|+++...+. +++++.++|||||.|++.+
T Consensus 126 ~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 126 KVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 8999999854432 2467899999999999985
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-15 Score=120.61 Aligned_cols=103 Identities=17% Similarity=0.078 Sum_probs=87.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+.++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.|++++...+.. .+++++.+|+.+.....++||
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~fD 187 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFG--SRVEGVTLSAAQADFGNRRARELRID-----DHVRSRVCNMLDTPFDKGAVT 187 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEECCTTSCCCCTTCEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCC-----CceEEEECChhcCCCCCCCEe
Confidence 45788999999999999999998853 78999999999999999999887653 589999999987654457999
Q ss_pred EEEEccCCCC-----chHHHHHhcCCCcEEEEEeC
Q 028002 146 AIHVGAAAPE-----IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 146 ~V~~~~~~~~-----~~~~~~~~Lk~gG~lv~~~~ 175 (215)
+|++...+++ +++++.++|||||++++..+
T Consensus 188 ~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 188 ASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9999877654 44678899999999998653
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=118.01 Aligned_cols=129 Identities=13% Similarity=0.199 Sum_probs=96.6
Q ss_pred CCCccccCCcccchhH---HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH
Q 028002 38 DSPMAIGYNATISAPH---MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 114 (215)
Q Consensus 38 ~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 114 (215)
+..+....+..++.|. +...+++.+. ..++.+|||+|||+|.++..+++. +..+++++|+|+.+++.|++++.
T Consensus 92 ~~~~~v~~~~lipr~~te~lv~~~l~~~~--~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~ 167 (284)
T 1nv8_A 92 GLSFLVEEGVFVPRPETEELVELALELIR--KYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAE 167 (284)
T ss_dssp TEEEECCTTSCCCCTTHHHHHHHHHHHHH--HHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHH
T ss_pred CeEEEeCCCceecChhHHHHHHHHHHHhc--ccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHH
Confidence 3334444455554443 3444444443 235679999999999999999988 44899999999999999999998
Q ss_pred hhcccCcccCCCeEEEeCCCCCCCCCCCCc---cEEEEccCCC-------------------------CchHHHH-HhcC
Q 028002 115 KSAAAPLLKEGSLSVHVGDGRKGWPEFAPY---DAIHVGAAAP-------------------------EIPQALI-DQLK 165 (215)
Q Consensus 115 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~---D~V~~~~~~~-------------------------~~~~~~~-~~Lk 165 (215)
..+.. ++++++++|+.+... ++| |+|++++++. .+.+.+. +.|+
T Consensus 168 ~~~l~-----~~v~~~~~D~~~~~~--~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~ 240 (284)
T 1nv8_A 168 RHGVS-----DRFFVRKGEFLEPFK--EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDT 240 (284)
T ss_dssp HTTCT-----TSEEEEESSTTGGGG--GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCC
T ss_pred HcCCC-----CceEEEECcchhhcc--cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCC
Confidence 87653 459999999987443 478 9999986542 2456788 9999
Q ss_pred CCcEEEEEeCCC
Q 028002 166 PGGRMVIPVGNI 177 (215)
Q Consensus 166 ~gG~lv~~~~~~ 177 (215)
|||++++.++..
T Consensus 241 pgG~l~~e~~~~ 252 (284)
T 1nv8_A 241 SGKIVLMEIGED 252 (284)
T ss_dssp TTCEEEEECCTT
T ss_pred CCCEEEEEECch
Confidence 999999988764
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=119.67 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028002 53 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 53 ~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
.....+++.+. ...++.+|||+|||+|..+..+++.++...+++++|+|+.+++.+++++...+ .++.+..+
T Consensus 8 ~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-------~~v~~~~~ 79 (284)
T 3gu3_A 8 DYVSFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-------YDSEFLEG 79 (284)
T ss_dssp HHHHHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS-------SEEEEEES
T ss_pred HHHHHHHHHHh-ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC-------CceEEEEc
Confidence 34555555553 35678999999999999999999886434799999999999999999876533 37999999
Q ss_pred CCCCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028002 133 DGRKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 133 d~~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+.+.... ++||+|++...++++ ++++.++|||||++++..++
T Consensus 80 d~~~~~~~-~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 80 DATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CTTTCCCS-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred chhhcCcC-CCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 99875544 799999999877554 46788999999999998777
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=110.59 Aligned_cols=112 Identities=14% Similarity=0.104 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCC--eEEEe
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS--LSVHV 131 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~--v~~~~ 131 (215)
....+++.+. ..++.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++...+. .+ +.+..
T Consensus 40 ~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~-~--~~v~~~D~~~~~~~~a~~~~~~~~~------~~~~~~~~~ 108 (194)
T 1dus_A 40 GTKILVENVV--VDKDDDILDLGCGYGVIGIALADE-V--KSTTMADINRRAIKLAKENIKLNNL------DNYDIRVVH 108 (194)
T ss_dssp HHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG-S--SEEEEEESCHHHHHHHHHHHHHTTC------TTSCEEEEE
T ss_pred HHHHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc-C--CeEEEEECCHHHHHHHHHHHHHcCC------CccceEEEE
Confidence 4566677665 567889999999999999999887 3 7999999999999999999877554 34 99999
Q ss_pred CCCCCCCCCCCCccEEEEccCCCC-------chHHHHHhcCCCcEEEEEeCCC
Q 028002 132 GDGRKGWPEFAPYDAIHVGAAAPE-------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 132 ~d~~~~~~~~~~~D~V~~~~~~~~-------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+|+.+... .++||+|+++.++++ +++.+.++|+|||.+++..++.
T Consensus 109 ~d~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 109 SDLYENVK-DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp CSTTTTCT-TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred Cchhcccc-cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 99887554 378999999987754 3467789999999999988763
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=116.02 Aligned_cols=121 Identities=13% Similarity=0.044 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028002 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
...+...+++.+.. ..++.+|||+|||+|.++..++.. +. .+|+++|+|+.+++.|++++...+.. ..+++++
T Consensus 37 ~~~~~~~l~~~l~~-~~~~~~vLDlGcGtG~~~~~~~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~----~~~v~~~ 109 (201)
T 2ift_A 37 GDRVKETLFNWLMP-YIHQSECLDGFAGSGSLGFEALSR-QA-KKVTFLELDKTVANQLKKNLQTLKCS----SEQAEVI 109 (201)
T ss_dssp -CHHHHHHHHHHHH-HHTTCEEEETTCTTCHHHHHHHHT-TC-SEEEEECSCHHHHHHHHHHHHHTTCC----TTTEEEE
T ss_pred HHHHHHHHHHHHHH-hcCCCeEEEcCCccCHHHHHHHHc-cC-CEEEEEECCHHHHHHHHHHHHHhCCC----ccceEEE
Confidence 33345556666542 125789999999999999987776 33 68999999999999999998875531 1378999
Q ss_pred eCCCCCCCCC--CCC-ccEEEEccCCCC-----chHHH--HHhcCCCcEEEEEeCCCc
Q 028002 131 VGDGRKGWPE--FAP-YDAIHVGAAAPE-----IPQAL--IDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 131 ~~d~~~~~~~--~~~-~D~V~~~~~~~~-----~~~~~--~~~Lk~gG~lv~~~~~~~ 178 (215)
.+|+.+..+. .++ ||+|+++.++.. +++.+ .++|+|||.+++.++...
T Consensus 110 ~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 110 NQSSLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CSCHHHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred ECCHHHHHHhhccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 9997654332 367 999999988532 33445 446999999999876543
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-15 Score=111.25 Aligned_cols=118 Identities=25% Similarity=0.369 Sum_probs=94.6
Q ss_pred cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE
Q 028002 49 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 49 ~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
.+.+.+...+++.+. ..++.+|||+|||+|..+..+++.. .+++++|+++.+++.+++++...+.. .++.
T Consensus 16 ~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~-----~~~~ 85 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLG-----DNVT 85 (192)
T ss_dssp CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCC-----TTEE
T ss_pred CChHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCC-----cceE
Confidence 345555666677665 7788999999999999999999874 79999999999999999998876542 5789
Q ss_pred EEeCCCCCCCCCCCCccEEEEccCCCC---chHHHHHhcCCCcEEEEEeCC
Q 028002 129 VHVGDGRKGWPEFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 129 ~~~~d~~~~~~~~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+..+|.....+..+.||+|++...+++ +++.+.++|+|||.+++..++
T Consensus 86 ~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 86 LMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp EEESCHHHHHTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred EEecCHHHhcccCCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 999987663333258999999987655 446788999999999997654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=116.48 Aligned_cols=106 Identities=25% Similarity=0.246 Sum_probs=86.9
Q ss_pred HHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC
Q 028002 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 138 (215)
Q Consensus 59 l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 138 (215)
+..+...+.++.+|||+|||+|..+..+++. + .+++++|+++.+++.++++.. ..+++++.+|+....
T Consensus 44 ~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~~ 111 (242)
T 3l8d_A 44 IPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT-G--YKAVGVDISEVMIQKGKERGE---------GPDLSFIKGDLSSLP 111 (242)
T ss_dssp HHHHHHHSCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHTTTC---------BTTEEEEECBTTBCS
T ss_pred HHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc-C--CeEEEEECCHHHHHHHHhhcc---------cCCceEEEcchhcCC
Confidence 4444444678899999999999999999987 3 689999999999999987631 168999999998765
Q ss_pred CCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028002 139 PEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
...++||+|++...++++ ++++.++|+|||++++...+
T Consensus 112 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 155 (242)
T 3l8d_A 112 FENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILG 155 (242)
T ss_dssp SCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcC
Confidence 555899999999988754 46789999999999998743
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.62 E-value=9.6e-15 Score=112.00 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+.+.+...+.++.+|||+|||+|..+..+++.. .+++++|+++.+++.+++++...+ .+++++.+|+
T Consensus 25 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~ 94 (227)
T 1ve3_A 25 IETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE-------SNVEFIVGDA 94 (227)
T ss_dssp HHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT-------CCCEEEECCT
T ss_pred HHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC-------CCceEEECch
Confidence 344455555456678899999999999999998874 389999999999999999887643 4789999998
Q ss_pred CCCCCCCCCccEEEEccC--CCC------chHHHHHhcCCCcEEEEEeCC
Q 028002 135 RKGWPEFAPYDAIHVGAA--APE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~--~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.......++||+|++... ..+ +++.+.++|+|||.+++..++
T Consensus 95 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 95 RKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp TSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 775444478999999987 433 346788999999999998765
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=114.89 Aligned_cols=98 Identities=19% Similarity=0.232 Sum_probs=82.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|..+..+++.. .+++++|+++.+++.+++++... .+++++.+|+.+..+ .++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~~~~-~~~fD 116 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRW--------SHISWAATDILQFST-AELFD 116 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTC--------SSEEEEECCTTTCCC-SCCEE
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccC--------CCeEEEEcchhhCCC-CCCcc
Confidence 5567899999999999999999874 69999999999999999876542 479999999987764 48999
Q ss_pred EEEEccCCCCch---------HHHHHhcCCCcEEEEEeC
Q 028002 146 AIHVGAAAPEIP---------QALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 146 ~V~~~~~~~~~~---------~~~~~~Lk~gG~lv~~~~ 175 (215)
+|++...++++. +++.++|||||.+++.++
T Consensus 117 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 117 LIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp EEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 999998775543 467899999999999653
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=114.45 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=91.6
Q ss_pred cCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh
Q 028002 37 VDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116 (215)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 116 (215)
.+..++++.+.+. ....+++.+.....++.+|||+|||+|..+..+++. + ..+++++|+++.+++.+++++...
T Consensus 33 ~~~~~~f~~~~~~----~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~ 106 (205)
T 3grz_A 33 LDPGLAFGTGNHQ----TTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL-G-AKSVLATDISDESMTAAEENAALN 106 (205)
T ss_dssp ESCC-----CCHH----HHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHT
T ss_pred ecCCcccCCCCCc----cHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHc
Confidence 3444445554332 234455555544677899999999999999998875 3 369999999999999999998876
Q ss_pred cccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCc---hHHHHHhcCCCcEEEEEe
Q 028002 117 AAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEI---PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 117 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~---~~~~~~~Lk~gG~lv~~~ 174 (215)
+. .++++..+|+..... ++||+|+++...+++ ++.+.++|+|||++++..
T Consensus 107 ~~------~~v~~~~~d~~~~~~--~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 159 (205)
T 3grz_A 107 GI------YDIALQKTSLLADVD--GKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSG 159 (205)
T ss_dssp TC------CCCEEEESSTTTTCC--SCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEE
T ss_pred CC------CceEEEeccccccCC--CCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 54 359999999877542 789999998877553 456778999999999963
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-15 Score=115.37 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=89.9
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+. ...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.|++++...+.. ++++++.+|+
T Consensus 51 ~~~~l~~l~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~-----~~v~~~~~d~ 124 (248)
T 3tfw_A 51 QGQFLALLV-RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD-----QRVTLREGPA 124 (248)
T ss_dssp HHHHHHHHH-HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT-----TTEEEEESCH
T ss_pred HHHHHHHHH-hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCH
Confidence 444555553 2456789999999999999999998754689999999999999999999887654 5899999998
Q ss_pred CCCCC---CCCCccEEEEccCCCC---chHHHHHhcCCCcEEEEE
Q 028002 135 RKGWP---EFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 135 ~~~~~---~~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~ 173 (215)
.+..+ ..++||+|+++..... +++.+.++|||||+|++.
T Consensus 125 ~~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 125 LQSLESLGECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp HHHHHTCCSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred HHHHHhcCCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence 65322 2258999999887654 456788999999999985
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-15 Score=121.12 Aligned_cols=105 Identities=17% Similarity=0.200 Sum_probs=87.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++...+. .++.++.+|+.......+.||
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~------~~v~~~~~D~~~~~~~~~~fD 189 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILFHSSSLHIGELNVEFD 189 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEESSCGGGGGGGCCCEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC------CeEEEEECChhhcccccccCC
Confidence 77889999999999999999999875558999999999999999999988765 479999999876543336899
Q ss_pred EEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+++.++. .+++.+.++|||||+|++++++
T Consensus 190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 999976531 3446688999999999998765
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-15 Score=118.15 Aligned_cols=103 Identities=19% Similarity=0.136 Sum_probs=88.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
.+++.+|||+|||+|.++..+++.. . .+|+++|+++.+++.|++++..++.. ++++++.+|+.+... .++||
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~-~-~~V~~vD~s~~~~~~a~~n~~~n~~~-----~~v~~~~~D~~~~~~-~~~fD 194 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-K-AKVIAIEKDPYTFKFLVENIHLNKVE-----DRMSAYNMDNRDFPG-ENIAD 194 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-C-CEEEEECCCHHHHHHHHHHHHHTTCT-----TTEEEECSCTTTCCC-CSCEE
T ss_pred CCCCCEEEEecccCCHHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEEECCHHHhcc-cCCcc
Confidence 6778999999999999999999984 4 27999999999999999999887653 469999999988766 47899
Q ss_pred EEEEccCCC--CchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAP--EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~--~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+++.+.. .+++.+.++|+|||++++..+.
T Consensus 195 ~Vi~~~p~~~~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 195 RILMGYVVRTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp EEEECCCSSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEECCchhHHHHHHHHHHHCCCCeEEEEEEee
Confidence 999987754 5778899999999999996543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=116.22 Aligned_cols=111 Identities=23% Similarity=0.330 Sum_probs=90.6
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC
Q 028002 60 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 139 (215)
Q Consensus 60 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 139 (215)
+.+...++++.+|+|+|||+|.+++.+++. ++..+|+++|+++.+++.|++++..++.. +++++..+|..+...
T Consensus 13 ~~i~~~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~-----~~I~~~~gD~l~~~~ 86 (230)
T 3lec_A 13 QKVANYVPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLT-----SKIDVRLANGLSAFE 86 (230)
T ss_dssp HHHHTTSCTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCT-----TTEEEEECSGGGGCC
T ss_pred HHHHHhCCCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEECchhhccc
Confidence 444446788899999999999999999987 56578999999999999999999988765 679999999988766
Q ss_pred CCCCccEEEEccCC----CCchHHHHHhcCCCcEEEEEeCC
Q 028002 140 EFAPYDAIHVGAAA----PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 140 ~~~~~D~V~~~~~~----~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+.++||+|+..+.. ..+++.....|+++|+|+++-..
T Consensus 87 ~~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~~ 127 (230)
T 3lec_A 87 EADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPNN 127 (230)
T ss_dssp GGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred cccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECCC
Confidence 53479998766543 34456667789999999997543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-15 Score=118.60 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=85.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-CCCCCc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~ 144 (215)
..++.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++...+.. .+++++.+|+.... ...++|
T Consensus 66 ~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~f 137 (285)
T 4htf_A 66 GPQKLRVLDAGGGEGQTAIKMAER-G--HQVILCDLSAQMIDRAKQAAEAKGVS-----DNMQFIHCAAQDVASHLETPV 137 (285)
T ss_dssp CSSCCEEEEETCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHC-CCG-----GGEEEEESCGGGTGGGCSSCE
T ss_pred CCCCCEEEEeCCcchHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcCCC-----cceEEEEcCHHHhhhhcCCCc
Confidence 344679999999999999999987 3 69999999999999999998876543 58999999988765 234799
Q ss_pred cEEEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028002 145 DAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+|++...++++ ++++.++|||||++++..++
T Consensus 138 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 138 DLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred eEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 999999887654 46789999999999997754
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-15 Score=117.64 Aligned_cols=102 Identities=20% Similarity=0.289 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.+++++...+. .++.++.+|+....+. ++||+
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~------~~v~~~~~d~~~~~~~-~~fD~ 179 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAI------KNIHILQSDWFSALAG-QQFAM 179 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCSTTGGGTT-CCEEE
T ss_pred cCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEEcchhhhccc-CCccE
Confidence 567899999999999999999875 557999999999999999999887654 4799999998775433 68999
Q ss_pred EEEccCCC-------------------------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 147 IHVGAAAP-------------------------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 147 V~~~~~~~-------------------------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|++++++. .+++.+.++|+|||++++..+.
T Consensus 180 Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~ 240 (276)
T 2b3t_A 180 IVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW 240 (276)
T ss_dssp EEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred EEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 99986542 1235677899999999998654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.6e-15 Score=117.97 Aligned_cols=104 Identities=24% Similarity=0.326 Sum_probs=88.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|..+..+++. .+..+++++|+++.+++.+++++...+. .++.+..+|+.......++||
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD 107 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLEKARENTEKNGI------KNVKFLQANIFSLPFEDSSFD 107 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGCCSCTTCEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEcccccCCCCCCCee
Confidence 477899999999999999999998 4558999999999999999999887654 579999999987655558999
Q ss_pred EEEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++...++++ ++.+.++|||||++++..++
T Consensus 108 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 108 HIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 99999877553 46789999999999997654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.9e-15 Score=120.97 Aligned_cols=101 Identities=28% Similarity=0.343 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.++.+|||+|||+|.++..+++. + .+|+++|+|+.+++.+++++..++. +++++.+|+.+.....++||+
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~-g--~~V~gvDis~~al~~A~~n~~~~~~-------~v~~~~~D~~~~~~~~~~fD~ 301 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM-G--AEVVGVEDDLASVLSLQKGLEANAL-------KAQALHSDVDEALTEEARFDI 301 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT-T--CEEEEEESBHHHHHHHHHHHHHTTC-------CCEEEECSTTTTSCTTCCEEE
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHHcCC-------CeEEEEcchhhccccCCCeEE
Confidence 36789999999999999999987 3 6999999999999999999987653 488999999887655579999
Q ss_pred EEEccCCCC-----------chHHHHHhcCCCcEEEEEeCCC
Q 028002 147 IHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 147 V~~~~~~~~-----------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|+++.++++ +++.+.++|+|||.+++.++..
T Consensus 302 Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 302 IVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp EEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred EEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 999988765 4467889999999999987654
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-15 Score=116.18 Aligned_cols=113 Identities=24% Similarity=0.303 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+.. ..++.+|||+|||+|+.+..+++.+++.++++++|+++.+++.|++++...+.. ++++++.+|+
T Consensus 67 ~~~ll~~l~~-~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-----~~i~~~~gda 140 (247)
T 1sui_A 67 EGQFLSMLLK-LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD-----HKIDFREGPA 140 (247)
T ss_dssp HHHHHHHHHH-HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG-----GGEEEEESCH
T ss_pred HHHHHHHHHH-hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CCeEEEECCH
Confidence 3444554432 445689999999999999999998754689999999999999999999876653 5799999998
Q ss_pred CCCCCC-------CCCccEEEEccCCCC---chHHHHHhcCCCcEEEEE
Q 028002 135 RKGWPE-------FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 135 ~~~~~~-------~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~ 173 (215)
.+..+. .++||+|+++..... +++.+.++|+|||+|++.
T Consensus 141 ~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 141 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp HHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred HHHHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEe
Confidence 653221 378999999876544 446788999999999984
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=114.61 Aligned_cols=112 Identities=14% Similarity=0.200 Sum_probs=86.0
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..++..+. ...++.+|||+|||+|..+..+++.+++..+|+++|+++.+++.|++++...+.. ++++++.+|+.
T Consensus 47 ~~~l~~l~-~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~ 120 (221)
T 3u81_A 47 GQIMDAVI-REYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ-----DKVTILNGASQ 120 (221)
T ss_dssp HHHHHHHH-HHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-----GGEEEEESCHH
T ss_pred HHHHHHHH-HhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC-----CceEEEECCHH
Confidence 33444433 1445789999999999999999987655689999999999999999999887654 57999999975
Q ss_pred CCCCC------CCCccEEEEccCCCCchH---HHH--HhcCCCcEEEEE
Q 028002 136 KGWPE------FAPYDAIHVGAAAPEIPQ---ALI--DQLKPGGRMVIP 173 (215)
Q Consensus 136 ~~~~~------~~~~D~V~~~~~~~~~~~---~~~--~~Lk~gG~lv~~ 173 (215)
+..+. .++||+|+++...++... .+. ++|||||+|++.
T Consensus 121 ~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~~LkpgG~lv~~ 169 (221)
T 3u81_A 121 DLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLAD 169 (221)
T ss_dssp HHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHTTCCCTTCEEEES
T ss_pred HHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhccccCCCeEEEEe
Confidence 42211 158999999987765543 111 799999999985
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.6e-15 Score=118.35 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=84.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh-cccCcccCCCeEEEeCCCCCCCCCC---
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHVGDGRKGWPEF--- 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~--- 141 (215)
..++.+|||+|||+|..+..+++.+.+..+|+|+|+|+.+++.+++++... +. ..+++++++|+.+.....
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~ 108 (299)
T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT-----YKNVSFKISSSDDFKFLGADS 108 (299)
T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C-----CTTEEEEECCTTCCGGGCTTT
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----CCceEEEEcCHHhCCcccccc
Confidence 457899999999999999999987534589999999999999999988764 21 268999999998754443
Q ss_pred ---CCccEEEEccCCCC-----chHHHHHhcCCCcEEEE
Q 028002 142 ---APYDAIHVGAAAPE-----IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 142 ---~~~D~V~~~~~~~~-----~~~~~~~~Lk~gG~lv~ 172 (215)
++||+|++...+++ +++++.++|+|||.|++
T Consensus 109 ~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 109 VDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp TTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence 68999999988755 44678999999999988
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-15 Score=113.63 Aligned_cols=119 Identities=17% Similarity=0.077 Sum_probs=88.3
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE
Q 028002 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 129 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~ 129 (215)
+...+...+++.+... .++.+|||+|||+|.++..+++. +. .+|+++|+|+.+++.|++++...+. .++++
T Consensus 37 ~~~~~~~~l~~~l~~~-~~~~~vLDlgcG~G~~~~~l~~~-~~-~~V~~vD~s~~~l~~a~~~~~~~~~------~~v~~ 107 (202)
T 2fpo_A 37 TTDRVRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSR-YA-AGATLIEMDRAVSQQLIKNLATLKA------GNARV 107 (202)
T ss_dssp -CHHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHT-TC-SEEEEECSCHHHHHHHHHHHHHTTC------CSEEE
T ss_pred CHHHHHHHHHHHHHhh-cCCCeEEEeCCCcCHHHHHHHhc-CC-CEEEEEECCHHHHHHHHHHHHHcCC------CcEEE
Confidence 3334455666666421 25789999999999999988776 33 5899999999999999999987653 58999
Q ss_pred EeCCCCCCCC-CCCCccEEEEccCCC-----CchHHHHH--hcCCCcEEEEEeCCC
Q 028002 130 HVGDGRKGWP-EFAPYDAIHVGAAAP-----EIPQALID--QLKPGGRMVIPVGNI 177 (215)
Q Consensus 130 ~~~d~~~~~~-~~~~~D~V~~~~~~~-----~~~~~~~~--~Lk~gG~lv~~~~~~ 177 (215)
+++|+.+..+ ..++||+|+++.+++ .+++.+.+ +|+|||++++.+...
T Consensus 108 ~~~D~~~~~~~~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 108 VNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp ECSCHHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred EECCHHHHHhhcCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 9999765322 336899999998844 23344544 499999999987653
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=112.54 Aligned_cols=113 Identities=20% Similarity=0.274 Sum_probs=84.8
Q ss_pred HHHHHHHHH-hcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 55 HATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 55 ~~~~l~~l~-~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
...++..+. ..++++.+|||+|||+|..+..+++.+++.++|+++|+++.+++...+..... .++.++.+|
T Consensus 62 a~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--------~nv~~i~~D 133 (232)
T 3id6_C 62 AGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--------PNIFPLLAD 133 (232)
T ss_dssp HHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--------TTEEEEECC
T ss_pred HHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------CCeEEEEcc
Confidence 444545442 23678999999999999999999999887899999999999876554443321 589999999
Q ss_pred CCCCC---CCCCCccEEEEccCCCCch----HHHHHhcCCCcEEEEEeC
Q 028002 134 GRKGW---PEFAPYDAIHVGAAAPEIP----QALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 134 ~~~~~---~~~~~~D~V~~~~~~~~~~----~~~~~~Lk~gG~lv~~~~ 175 (215)
+.... ...++||+|+++.+.+... ..+.+.|||||+|++++.
T Consensus 134 a~~~~~~~~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 134 ARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp TTCGGGTTTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccchhhhccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 87532 1136899999998775433 344559999999999863
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.60 E-value=6e-15 Score=113.89 Aligned_cols=100 Identities=18% Similarity=0.135 Sum_probs=84.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.+++++... .++.++.+|+...... ++||
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~~~~~-~~fD 111 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGN--------LKVKYIEADYSKYDFE-EKYD 111 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSC--------TTEEEEESCTTTCCCC-SCEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccC--------CCEEEEeCchhccCCC-CCce
Confidence 4567899999999999999999985 5589999999999999999876432 3799999999886665 8999
Q ss_pred EEEEccCCCCc--------hHHHHHhcCCCcEEEEEeC
Q 028002 146 AIHVGAAAPEI--------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 146 ~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~~ 175 (215)
+|++...++++ ++++.++|||||++++...
T Consensus 112 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 112 MVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99999887654 4567899999999999763
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-15 Score=116.01 Aligned_cols=111 Identities=15% Similarity=0.163 Sum_probs=90.3
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC
Q 028002 60 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 139 (215)
Q Consensus 60 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 139 (215)
+.+...++++.+|||+|||+|.+++.+++. ++..+|+++|+++.+++.|++++..+++. +++++..+|..+...
T Consensus 13 ~~i~~~v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~-----~~I~v~~gD~l~~~~ 86 (244)
T 3gnl_A 13 EKVASYITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLT-----EQIDVRKGNGLAVIE 86 (244)
T ss_dssp HHHHTTCCSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCT-----TTEEEEECSGGGGCC
T ss_pred HHHHHhCCCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEEecchhhccC
Confidence 444445788899999999999999999987 56578999999999999999999988764 579999999988766
Q ss_pred CCCCccEEEEccCC----CCchHHHHHhcCCCcEEEEEeCC
Q 028002 140 EFAPYDAIHVGAAA----PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 140 ~~~~~D~V~~~~~~----~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+.++||+|+..+.. ..+++.....|+++|+|+++-..
T Consensus 87 ~~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~~ 127 (244)
T 3gnl_A 87 KKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPNI 127 (244)
T ss_dssp GGGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred ccccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 53469998765543 34556677889999999997543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-15 Score=114.96 Aligned_cols=110 Identities=16% Similarity=0.114 Sum_probs=84.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---CCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~ 142 (215)
..++.+|||||||+|.++..+++.. +...++|+|+++.+++.|++++............++.++.+|+...+ ...+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCc
Confidence 4556799999999999999999884 56799999999999999998876432111112368999999987632 2347
Q ss_pred CccEEEEccCCC--------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 143 PYDAIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 143 ~~D~V~~~~~~~--------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+||.|++..+.+ .+++.+.++|||||.|++.+..
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 899998876543 3667889999999999998775
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=112.71 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=91.8
Q ss_pred cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE
Q 028002 49 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 49 ~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
.+...+...+++.+. ...++.+|||+|||+|..+..+++. + ..+++++|+++.+++.+++++...+.. .+++
T Consensus 26 p~~~~~~~~~~~~l~-~~~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~~~ 97 (187)
T 2fhp_A 26 PTTDKVKESIFNMIG-PYFDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNFAALKVIKENIAITKEP-----EKFE 97 (187)
T ss_dssp CCCHHHHHHHHHHHC-SCCSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHTCG-----GGEE
T ss_pred cCHHHHHHHHHHHHH-hhcCCCCEEEeCCccCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHhCCC-----cceE
Confidence 344445666666664 2356789999999999999988875 3 368999999999999999999876543 4799
Q ss_pred EEeCCCCCCCC----CCCCccEEEEccCCC-----CchHHH--HHhcCCCcEEEEEeCCCc
Q 028002 129 VHVGDGRKGWP----EFAPYDAIHVGAAAP-----EIPQAL--IDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 129 ~~~~d~~~~~~----~~~~~D~V~~~~~~~-----~~~~~~--~~~Lk~gG~lv~~~~~~~ 178 (215)
++.+|+.+... ..++||+|+++.++. .....+ .++|+|||.+++.++...
T Consensus 98 ~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 98 VRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp EEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred EEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 99999876332 137899999998743 122344 667999999999887653
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.9e-15 Score=117.87 Aligned_cols=101 Identities=22% Similarity=0.179 Sum_probs=84.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+.++.+|||+|||+|..+..+++..+ .+|+++|+|+.+++.+++++...+.. .++++..+|+.+.. ++||
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~---~~fD 157 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTN-----RSRQVLLQGWEDFA---EPVD 157 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCS-----SCEEEEESCGGGCC---CCCS
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEECChHHCC---CCcC
Confidence 56788999999999999999998863 69999999999999999998776543 46899999986642 7899
Q ss_pred EEEEccCCCCc--------hHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAPEI--------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++...++++ ++++.++|||||.+++..+.
T Consensus 158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 196 (318)
T 2fk8_A 158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 196 (318)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99999877654 35788999999999997654
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-15 Score=112.71 Aligned_cols=111 Identities=22% Similarity=0.202 Sum_probs=88.1
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+...+...+.++.+|||+|||+|.++..+++. ++ .+++++|+++.+++.+++++.. ..++.+..+|+..
T Consensus 31 ~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~~~~a~~~~~~--------~~~i~~~~~d~~~ 100 (215)
T 2pxx_A 31 SFRALLEPELRPEDRILVLGCGNSALSYELFLG-GF-PNVTSVDYSSVVVAAMQACYAH--------VPQLRWETMDVRK 100 (215)
T ss_dssp HHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHT-TC-CCEEEEESCHHHHHHHHHHTTT--------CTTCEEEECCTTS
T ss_pred HHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHc-CC-CcEEEEeCCHHHHHHHHHhccc--------CCCcEEEEcchhc
Confidence 345555545678899999999999999999987 44 3899999999999999987643 1578999999877
Q ss_pred CCCCCCCccEEEEccCCC---------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 137 GWPEFAPYDAIHVGAAAP---------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~---------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.....++||+|++..+++ .+++++.++|+|||.+++..++.
T Consensus 101 ~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 101 LDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp CCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 544447899999876542 34467889999999999988764
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=115.21 Aligned_cols=113 Identities=23% Similarity=0.327 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+. ...++.+|||+|||+|..+..+++.+++.++++++|+++.+++.+++++...+.. ++++++.+|+
T Consensus 46 ~~~~l~~l~-~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~ 119 (223)
T 3duw_A 46 QGKFLQLLV-QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN-----DRVEVRTGLA 119 (223)
T ss_dssp HHHHHHHHH-HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEESCH
T ss_pred HHHHHHHHH-HhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCH
Confidence 445555543 2456789999999999999999998644589999999999999999999877654 5699999998
Q ss_pred CCCCCC-----CCCccEEEEccCCCC---chHHHHHhcCCCcEEEEE
Q 028002 135 RKGWPE-----FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 135 ~~~~~~-----~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~ 173 (215)
.+..+. .++||+|+++..... +++.+.++|+|||++++.
T Consensus 120 ~~~~~~~~~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 120 LDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp HHHHHHHHHTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred HHHHHHHHhcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEe
Confidence 653221 157999999887554 456788999999998885
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=114.46 Aligned_cols=114 Identities=17% Similarity=0.206 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChH------HHHHHHHHHHhhcccCcccCCCeE
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE------LVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~------~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
...+++.+. +.++.+|||+|||+|..+..+++..++..+++++|+|+. +++.+++++...+.. .+++
T Consensus 32 ~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~-----~~v~ 104 (275)
T 3bkx_A 32 RLAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG-----DRLT 104 (275)
T ss_dssp HHHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG-----GGEE
T ss_pred HHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC-----CceE
Confidence 445556554 778899999999999999999998766679999999997 999999998765543 4789
Q ss_pred EEeCC-CCCC--CCCCCCccEEEEccCCCCch------HHHHHhcCCCcEEEEEeC
Q 028002 129 VHVGD-GRKG--WPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 129 ~~~~d-~~~~--~~~~~~~D~V~~~~~~~~~~------~~~~~~Lk~gG~lv~~~~ 175 (215)
+..+| .... ....++||+|++...++++. +.+..+++|||++++...
T Consensus 105 ~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 105 VHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp EECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred EEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99998 3221 12337899999998876543 455667777999999653
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.1e-16 Score=113.59 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
+...+++.+. ...++.+|||+|||+|..+..+++. +. .+++++|+++.+++.+++++...+.. .++.++.+|
T Consensus 18 ~~~~~~~~l~-~~~~~~~vLDlGcG~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~~~~~~~d 89 (177)
T 2esr_A 18 VRGAIFNMIG-PYFNGGRVLDLFAGSGGLAIEAVSR-GM-SAAVLVEKNRKAQAIIQDNIIMTKAE-----NRFTLLKME 89 (177)
T ss_dssp CHHHHHHHHC-SCCCSCEEEEETCTTCHHHHHHHHT-TC-CEEEEECCCHHHHHHHHHHHHTTTCG-----GGEEEECSC
T ss_pred HHHHHHHHHH-hhcCCCeEEEeCCCCCHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHHHHHcCCC-----CceEEEECc
Confidence 3455556553 2456789999999999999999887 32 69999999999999999999876543 478999999
Q ss_pred CCCCCC-CCCCccEEEEccCCC-----CchHHHH--HhcCCCcEEEEEeCCC
Q 028002 134 GRKGWP-EFAPYDAIHVGAAAP-----EIPQALI--DQLKPGGRMVIPVGNI 177 (215)
Q Consensus 134 ~~~~~~-~~~~~D~V~~~~~~~-----~~~~~~~--~~Lk~gG~lv~~~~~~ 177 (215)
+.+..+ ..+.||+|+++.++. ...+.+. ++|+|||++++.++..
T Consensus 90 ~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 90 AERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HHHHHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHhHHhhcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 866322 225799999997752 2334555 8899999999988664
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-15 Score=116.34 Aligned_cols=117 Identities=18% Similarity=0.294 Sum_probs=93.3
Q ss_pred cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE
Q 028002 49 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 49 ~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
+.++.....+...+. ..++.+|||+|||+|..+..+++.+ +..+++++|+++.+++.|++++...+.. .++.
T Consensus 37 ~~~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~ 108 (233)
T 2gpy_A 37 IMDLLGMESLLHLLK--MAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLE-----SRIE 108 (233)
T ss_dssp CCCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCT-----TTEE
T ss_pred CcCHHHHHHHHHHHh--ccCCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEE
Confidence 345555555555554 5567899999999999999999985 4589999999999999999999876653 4799
Q ss_pred EEeCCCCCCCCC---CCCccEEEEccCCCC---chHHHHHhcCCCcEEEEE
Q 028002 129 VHVGDGRKGWPE---FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 129 ~~~~d~~~~~~~---~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~ 173 (215)
++.+|+....+. .++||+|+++.+.+. +++.+.++|+|||++++.
T Consensus 109 ~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 109 LLFGDALQLGEKLELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp EECSCGGGSHHHHTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEECCHHHHHHhcccCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 999998764321 368999999988753 447788999999999996
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-15 Score=117.63 Aligned_cols=119 Identities=17% Similarity=0.254 Sum_probs=92.0
Q ss_pred cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE
Q 028002 49 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 49 ~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
...|.....+...+. ..++.+|||+|||+|..+..+++.+++..+++++|+++.+++.|++++...+.. .++.
T Consensus 43 ~~~~~~~~~l~~l~~--~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-----~~v~ 115 (239)
T 2hnk_A 43 QISPEEGQFLNILTK--ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE-----NKIF 115 (239)
T ss_dssp SCCHHHHHHHHHHHH--HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-----GGEE
T ss_pred ccCHHHHHHHHHHHH--hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CCEE
Confidence 345554444444443 556789999999999999999998654589999999999999999999876643 4589
Q ss_pred EEeCCCCCCCC---------------C-C-CCccEEEEccCCCC---chHHHHHhcCCCcEEEEEe
Q 028002 129 VHVGDGRKGWP---------------E-F-APYDAIHVGAAAPE---IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 129 ~~~~d~~~~~~---------------~-~-~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~~ 174 (215)
+..+|..+..+ . . ++||+|+++..... +++.+.++|+|||++++..
T Consensus 116 ~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 116 LKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp EEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 99998754221 1 2 67999999977664 4478899999999999964
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-15 Score=114.33 Aligned_cols=93 Identities=23% Similarity=0.288 Sum_probs=80.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-C-CCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-E-FAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~-~~~ 143 (215)
..++.+|||+|||+|..+..+++. + .+|+++|+++.+++.++++. .+++++++|+....+ . .++
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~~~ 111 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ-A--ARWAAYDFSPELLKLARANA-----------PHADVYEWNGKGELPAGLGAP 111 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG-S--SEEEEEESCHHHHHHHHHHC-----------TTSEEEECCSCSSCCTTCCCC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc-C--CEEEEEECCHHHHHHHHHhC-----------CCceEEEcchhhccCCcCCCC
Confidence 567899999999999999999987 3 79999999999999998761 578999999954333 3 478
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEE
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~ 172 (215)
||+|++......+++++.++|||||.++.
T Consensus 112 fD~v~~~~~~~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 112 FGLIVSRRGPTSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp EEEEEEESCCSGGGGGHHHHEEEEEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHcCCCcEEEE
Confidence 99999998888899999999999999994
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=109.16 Aligned_cols=106 Identities=18% Similarity=0.104 Sum_probs=86.0
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+++.+. ..++.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++...+. .++.+..+|+..
T Consensus 23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~ 91 (199)
T 2xvm_A 23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN-G--YDVDAWDKNAMSIANVERIKSIENL------DNLHTRVVDLNN 91 (199)
T ss_dssp HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECCGGG
T ss_pred HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHHhCCC------CCcEEEEcchhh
Confidence 4455554 456789999999999999999987 3 6999999999999999998877553 479999999877
Q ss_pred CCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028002 137 GWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
... .++||+|++...++++ ++.+.++|+|||.+++..
T Consensus 92 ~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 92 LTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp CCC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 554 4789999999876543 357889999999987743
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-15 Score=114.23 Aligned_cols=99 Identities=21% Similarity=0.161 Sum_probs=81.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++++...+.. .++.++.+|+....+. ++||+|
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~-~~fD~v 136 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPE---RFVVGLDISESALAKANETYGSSPKA-----EYFSFVKEDVFTWRPT-ELFDLI 136 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTT---EEEEEECSCHHHHHHHHHHHTTSGGG-----GGEEEECCCTTTCCCS-SCEEEE
T ss_pred CCCCEEEeCCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHhhccCCC-----cceEEEECchhcCCCC-CCeeEE
Confidence 34599999999999999887642 78999999999999999988654322 5799999999886544 699999
Q ss_pred EEccCCCCch--------HHHHHhcCCCcEEEEEeC
Q 028002 148 HVGAAAPEIP--------QALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 148 ~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~~ 175 (215)
++...++++. +++.++|+|||.+++...
T Consensus 137 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 172 (235)
T 3lcc_A 137 FDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY 172 (235)
T ss_dssp EEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence 9998876543 678899999999998654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-15 Score=120.50 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=88.3
Q ss_pred HhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCC
Q 028002 63 EENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA 142 (215)
Q Consensus 63 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 142 (215)
...+.++.+|||+|||+|..+..++....+..+++++|+++.+++.+++++...+.. .+++++.+|+.+.... +
T Consensus 113 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~-~ 186 (305)
T 3ocj_A 113 QRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA-----GQITLHRQDAWKLDTR-E 186 (305)
T ss_dssp HHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG-----GGEEEEECCGGGCCCC-S
T ss_pred HhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEECchhcCCcc-C
Confidence 334788899999999999999988633345589999999999999999998776543 4699999999886555 8
Q ss_pred CccEEEEccCCCCc---------hHHHHHhcCCCcEEEEEeC
Q 028002 143 PYDAIHVGAAAPEI---------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 143 ~~D~V~~~~~~~~~---------~~~~~~~Lk~gG~lv~~~~ 175 (215)
+||+|++...++++ ++++.++|||||++++...
T Consensus 187 ~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 228 (305)
T 3ocj_A 187 GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFL 228 (305)
T ss_dssp CEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred CeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 99999998877553 4678899999999999763
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.9e-15 Score=115.60 Aligned_cols=105 Identities=18% Similarity=0.204 Sum_probs=85.7
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+.+.+.....++.+|||+|||+|.++..+++.. .+++++|+|+.+++.+++++ .++.++.+|+
T Consensus 37 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~ 102 (263)
T 3pfg_A 37 AADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRN-----------PDAVLHHGDM 102 (263)
T ss_dssp HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHC-----------TTSEEEECCT
T ss_pred HHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhC-----------CCCEEEECCh
Confidence 445555555456677899999999999999998873 68999999999999998763 3788999999
Q ss_pred CCCCCCCCCccEEEEcc-CCCCc---------hHHHHHhcCCCcEEEEEe
Q 028002 135 RKGWPEFAPYDAIHVGA-AAPEI---------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~-~~~~~---------~~~~~~~Lk~gG~lv~~~ 174 (215)
..... .++||+|++.. .++++ ++++.++|||||++++..
T Consensus 103 ~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 103 RDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp TTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred HHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 87655 48999999997 66655 356889999999999963
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=109.04 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=80.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+.++ +|||+|||+|..+..+++. + .+++++|+++.+++.+++++...+ .++.+..+|+.......++||
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD 96 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL-G--YEVTAVDQSSVGLAKAKQLAQEKG-------VKITTVQSNLADFDIVADAWE 96 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT-T--CEEEEECSSHHHHHHHHHHHHHHT-------CCEEEECCBTTTBSCCTTTCS
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC-C--CeEEEEECCHHHHHHHHHHHHhcC-------CceEEEEcChhhcCCCcCCcc
Confidence 5566 9999999999999999876 3 699999999999999999887653 378899999877654447899
Q ss_pred EEEEccCCC------CchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAP------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++..... .+++.+.++|+|||.+++...+
T Consensus 97 ~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 133 (202)
T 2kw5_A 97 GIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFA 133 (202)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred EEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 999864322 2346788999999999998754
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-15 Score=111.06 Aligned_cols=112 Identities=17% Similarity=0.088 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
..++++.+. +..++.+|||+|||+|..+..++...+ .+++++|+|+.+++.+++++...+ .++.+..+|+
T Consensus 11 ~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~ 80 (209)
T 2p8j_A 11 LYRFLKYCN-ESNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENFSRENN-------FKLNISKGDI 80 (209)
T ss_dssp HHHHHHHHH-HSSSCSEEEEESCCSSSCTHHHHHHTT--CEEEEEECCHHHHHHHHHHHHHHT-------CCCCEEECCT
T ss_pred HHHHHHHHh-ccCCCCEEEEECCCCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcC-------CceEEEECch
Confidence 455555554 466789999999999987554444323 699999999999999999887643 4688899998
Q ss_pred CCCCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEeCC
Q 028002 135 RKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.......++||+|++...++++ ++++.++|+|||++++...+
T Consensus 81 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 81 RKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp TSCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 8755444789999998877665 25678999999999997643
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.3e-15 Score=115.25 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=87.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+.. ..++.+|||+|||+|..+..+++.. .+++++|+|+.+++.+++++. .++.++.+|+
T Consensus 30 ~~~~~~~l~~-~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~----------~~v~~~~~d~ 95 (250)
T 2p7i_A 30 HPFMVRAFTP-FFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLK----------DGITYIHSRF 95 (250)
T ss_dssp HHHHHHHHGG-GCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSC----------SCEEEEESCG
T ss_pred HHHHHHHHHh-hcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhh----------CCeEEEEccH
Confidence 4556666652 3467899999999999999998874 489999999999999987642 1789999998
Q ss_pred CCCCCCCCCccEEEEccCCCCc------hHHHH-HhcCCCcEEEEEeCCC
Q 028002 135 RKGWPEFAPYDAIHVGAAAPEI------PQALI-DQLKPGGRMVIPVGNI 177 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~~------~~~~~-~~Lk~gG~lv~~~~~~ 177 (215)
.+.. ..++||+|++...++++ ++++. ++|||||++++.+++.
T Consensus 96 ~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 96 EDAQ-LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp GGCC-CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred HHcC-cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 7764 34789999999887664 36788 9999999999988664
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-15 Score=117.35 Aligned_cols=113 Identities=20% Similarity=0.305 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+. ...++.+|||+|||+|..+..+++.+++..+|+++|+++.+++.+++++...+.. ++++++.+|+
T Consensus 52 ~~~~l~~l~-~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~ 125 (225)
T 3tr6_A 52 QAQLLALLV-KLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS-----DKIGLRLSPA 125 (225)
T ss_dssp HHHHHHHHH-HHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEESCH
T ss_pred HHHHHHHHH-HhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-----CceEEEeCCH
Confidence 344444443 2446789999999999999999988654689999999999999999999887654 5699999998
Q ss_pred CCCCCC------CCCccEEEEccCCCC---chHHHHHhcCCCcEEEEE
Q 028002 135 RKGWPE------FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 135 ~~~~~~------~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~ 173 (215)
.+..+. .++||+|+++..... +++.+.++|+|||+|++.
T Consensus 126 ~~~~~~~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~ 173 (225)
T 3tr6_A 126 KDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVD 173 (225)
T ss_dssp HHHHHHHHTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHhhhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 653221 168999998876543 457788999999999984
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.6e-15 Score=107.98 Aligned_cols=118 Identities=18% Similarity=0.121 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028002 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
...+...++..+.....++.+|||+|||+|..+..+++. ++ +++++|+++.+++.+++++...+. ++++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-~~--~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~ 93 (171)
T 1ws6_A 24 PVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE-GW--EAVLVEKDPEAVRLLKENVRRTGL-------GARVV 93 (171)
T ss_dssp CHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT-TC--EEEEECCCHHHHHHHHHHHHHHTC-------CCEEE
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHC-CC--eEEEEeCCHHHHHHHHHHHHHcCC-------ceEEE
Confidence 344555666666533436789999999999999999987 43 499999999999999999877541 78899
Q ss_pred eCCCCCCCC----CCCCccEEEEccCC----CCchHHHH--HhcCCCcEEEEEeCCCc
Q 028002 131 VGDGRKGWP----EFAPYDAIHVGAAA----PEIPQALI--DQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 131 ~~d~~~~~~----~~~~~D~V~~~~~~----~~~~~~~~--~~Lk~gG~lv~~~~~~~ 178 (215)
.+|+.+..+ ..++||+|+++.++ ....+.+. ++|+|||.+++.++...
T Consensus 94 ~~d~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 94 ALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp CSCHHHHHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred eccHHHHHHhhhccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 998765322 12479999999765 33445666 88999999999887653
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-15 Score=116.46 Aligned_cols=99 Identities=16% Similarity=0.190 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.++.+|||+|||+|..+..+++. ++ .+++++|+++.+++.+++++. ..++.++.+|+.......++||+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEH-GA-KKVLGIDLSERMLTEAKRKTT---------SPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHCC---------CTTEEEEECCGGGCCCCTTCEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHhhc---------cCCeEEEEcchhhCCCCCCCeEE
Confidence 36789999999999999999987 43 489999999999999988754 16899999998776554589999
Q ss_pred EEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028002 147 IHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 147 V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|++...++++ ++++.++|||||.+++.+++
T Consensus 112 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 112 VLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 9999877654 36789999999999998654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.7e-15 Score=115.66 Aligned_cols=112 Identities=16% Similarity=0.129 Sum_probs=89.1
Q ss_pred HHHHHHHhcCC-CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 57 TCLQLLEENLK-PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 57 ~~l~~l~~~~~-~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
.++..+. ... ++.+|||+|||+|..+..+++.. + .+++++|+++.+++.|++++..++.. +++.++.+|+.
T Consensus 38 ~ll~~~~-~~~~~~~~vLDlG~G~G~~~~~la~~~-~-~~v~gvDi~~~~~~~a~~n~~~~~~~-----~~v~~~~~D~~ 109 (259)
T 3lpm_A 38 VLLAKFS-YLPIRKGKIIDLCSGNGIIPLLLSTRT-K-AKIVGVEIQERLADMAKRSVAYNQLE-----DQIEIIEYDLK 109 (259)
T ss_dssp HHHHHHC-CCCSSCCEEEETTCTTTHHHHHHHTTC-C-CEEEEECCSHHHHHHHHHHHHHTTCT-----TTEEEECSCGG
T ss_pred HHHHHHh-cCCCCCCEEEEcCCchhHHHHHHHHhc-C-CcEEEEECCHHHHHHHHHHHHHCCCc-----ccEEEEECcHH
Confidence 3344443 356 78999999999999999999873 4 49999999999999999999887654 57999999987
Q ss_pred CCCC--CCCCccEEEEccCCC--------------------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 136 KGWP--EFAPYDAIHVGAAAP--------------------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~~--~~~~~D~V~~~~~~~--------------------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+... ..++||+|++++++. .+++.+.++|+|||++++..+.
T Consensus 110 ~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 178 (259)
T 3lpm_A 110 KITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP 178 (259)
T ss_dssp GGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred HhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence 6542 247899999987652 2446788999999999997754
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.5e-16 Score=121.31 Aligned_cols=113 Identities=16% Similarity=0.258 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+.. ..++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.|++++...+.. ++++++.+|+
T Consensus 48 ~~~~l~~l~~-~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-----~~i~~~~gda 121 (242)
T 3r3h_A 48 QAQFMQMLIR-LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE-----HKIKLRLGPA 121 (242)
T ss_dssp HHHHHHHHHH-HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT-----TTEEEEESCH
T ss_pred HHHHHHHHHh-hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCH
Confidence 3444444431 445689999999999999999998755689999999999999999999887654 5899999998
Q ss_pred CCCCCC------CCCccEEEEccCCCC---chHHHHHhcCCCcEEEEE
Q 028002 135 RKGWPE------FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 135 ~~~~~~------~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~ 173 (215)
.+..+. .++||+|+++..... +++.+.++|+|||+|++.
T Consensus 122 ~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 122 LDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp HHHHHHHHHHHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEE
Confidence 654332 378999999887544 346788999999999983
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-15 Score=115.46 Aligned_cols=107 Identities=16% Similarity=0.194 Sum_probs=87.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+. ..++.+|||+|||+|..+..+++.+ +..+++++|+++.+++.++++. .++.+..+|+
T Consensus 22 ~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~-----------~~~~~~~~d~ 87 (259)
T 2p35_A 22 ARDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRL-----------PNTNFGKADL 87 (259)
T ss_dssp HHHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHS-----------TTSEEEECCT
T ss_pred HHHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----------CCcEEEECCh
Confidence 344455443 5677899999999999999999986 4479999999999999998761 5789999998
Q ss_pred CCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028002 135 RKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.... ..++||+|++...++++ ++++.++|+|||++++.+++
T Consensus 88 ~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 88 ATWK-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp TTCC-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred hhcC-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 8765 44789999999887664 35678999999999998764
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=110.28 Aligned_cols=108 Identities=17% Similarity=0.222 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+. ...++.+|||+|||+|.++..+++. + .+++++|+++.+++.+++ .+. .++.++.+|+
T Consensus 34 ~~~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~~D~s~~~~~~a~~----~~~------~~~~~~~~d~ 99 (218)
T 3ou2_A 34 APAALERLR-AGNIRGDVLELASGTGYWTRHLSGL-A--DRVTALDGSAEMIAEAGR----HGL------DNVEFRQQDL 99 (218)
T ss_dssp HHHHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH-S--SEEEEEESCHHHHHHHGG----GCC------TTEEEEECCT
T ss_pred HHHHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHh----cCC------CCeEEEeccc
Confidence 345556654 3667789999999999999999988 3 699999999999999986 221 5899999999
Q ss_pred CCCCCCCCCccEEEEccCCCCch--------HHHHHhcCCCcEEEEEeCCC
Q 028002 135 RKGWPEFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~~~~ 177 (215)
... ...++||+|++...++++. +++.++|+|||.+++...+.
T Consensus 100 ~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 100 FDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp TSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 877 4448999999998876543 56789999999999987654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-15 Score=119.64 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
....+...+. ..++.+|||+|||+|..+..+++. + .+|+|+|+|+.+++.++++....... ....++.+..+|
T Consensus 45 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~d 117 (293)
T 3thr_A 45 YKAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEE-G--FSVTSVDASDKMLKYALKERWNRRKE--PAFDKWVIEEAN 117 (293)
T ss_dssp HHHHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTTTS--HHHHTCEEEECC
T ss_pred HHHHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHhhhhcccc--cccceeeEeecC
Confidence 3455555554 456789999999999999999987 3 59999999999999999887443221 111477888888
Q ss_pred CCCCC---CCCCCccEEEEc-cCCCC-------------chHHHHHhcCCCcEEEEEeCC
Q 028002 134 GRKGW---PEFAPYDAIHVG-AAAPE-------------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 134 ~~~~~---~~~~~~D~V~~~-~~~~~-------------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+.... ...++||+|++. ..+++ +++++.++|||||++++.+++
T Consensus 118 ~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 118 WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp GGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 76643 344789999997 55533 345788999999999998754
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-14 Score=125.40 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
....+++.+. ..++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++............+++++++|
T Consensus 709 Rle~LLelL~--~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGD 786 (950)
T 3htx_A 709 RVEYALKHIR--ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGS 786 (950)
T ss_dssp HHHHHHHHHH--HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESC
T ss_pred HHHHHHHHhc--ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECc
Confidence 3445566665 45789999999999999999998753557999999999999999998765422111223589999999
Q ss_pred CCCCCCCCCCccEEEEccCCCCch--------HHHHHhcCCCcEEEEEeCCC
Q 028002 134 GRKGWPEFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+.......+.||+|++...++++. +++.++|||| .+++++++.
T Consensus 787 a~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 787 ILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp TTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred hHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 988766668999999999987755 4568999999 888888774
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=114.27 Aligned_cols=111 Identities=17% Similarity=0.127 Sum_probs=88.1
Q ss_pred HHHHHHHHH---HhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028002 54 MHATCLQLL---EENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 54 ~~~~~l~~l---~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
....+++.+ ...+.++.+|||+|||+|..+..+++. + .+++++|+|+.+++.+++++ ... ..++.+.
T Consensus 22 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~-~~~------~~~~~~~ 91 (263)
T 2yqz_A 22 VAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR-G--YRYIALDADAAMLEVFRQKI-AGV------DRKVQVV 91 (263)
T ss_dssp HHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT-T--CEEEEEESCHHHHHHHHHHT-TTS------CTTEEEE
T ss_pred HHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHh-hcc------CCceEEE
Confidence 345555555 224677899999999999999999886 3 78999999999999999886 211 2589999
Q ss_pred eCCCCCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEe
Q 028002 131 VGDGRKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 131 ~~d~~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~ 174 (215)
.+|+.......++||+|++...++++ ++++.++|+|||.+++..
T Consensus 92 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (263)
T 2yqz_A 92 QADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGW 141 (263)
T ss_dssp ESCTTSCCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcccccCCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEEe
Confidence 99997755445789999999887654 367889999999999873
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-15 Score=118.02 Aligned_cols=119 Identities=25% Similarity=0.430 Sum_probs=87.0
Q ss_pred ccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccC
Q 028002 41 MAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120 (215)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 120 (215)
..++.+.+.+. ..+++.+.....++.+|||+|||+|.++..+++. ++ +++++|+++.+++.+++++..++.
T Consensus 97 ~~fgtg~~~tt----~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~-g~--~v~gvDi~~~~v~~a~~n~~~~~~-- 167 (254)
T 2nxc_A 97 MAFGTGHHETT----RLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-GG--KALGVDIDPMVLPQAEANAKRNGV-- 167 (254)
T ss_dssp -----CCSHHH----HHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-TC--EEEEEESCGGGHHHHHHHHHHTTC--
T ss_pred ccccCCCCHHH----HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHh-CC--eEEEEECCHHHHHHHHHHHHHcCC--
Confidence 44555554432 3334444434677899999999999999998886 43 999999999999999999887543
Q ss_pred cccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC---CchHHHHHhcCCCcEEEEEe
Q 028002 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 121 ~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~---~~~~~~~~~Lk~gG~lv~~~ 174 (215)
. +++..+|.....+. ++||+|+++...+ .+++.+.++|+|||+++++.
T Consensus 168 ----~-v~~~~~d~~~~~~~-~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~ 218 (254)
T 2nxc_A 168 ----R-PRFLEGSLEAALPF-GPFDLLVANLYAELHAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp ----C-CEEEESCHHHHGGG-CCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----c-EEEEECChhhcCcC-CCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 3 78888887654333 6899999986543 35567889999999999964
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-14 Score=114.48 Aligned_cols=105 Identities=18% Similarity=0.185 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~ 144 (215)
+.++.+|||+|||+|..+..+++. +. .+++++|+++.+++.+++++...+.. .++.++.+|+..... ..++|
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~f 134 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GI-GEYYGVDIAEVSINDARVRARNMKRR-----FKVFFRAQDSYGRHMDLGKEF 134 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TC-SEEEEEESCHHHHHHHHHHHHTSCCS-----SEEEEEESCTTTSCCCCSSCE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CC-CEEEEEECCHHHHHHHHHHHHhcCCC-----ccEEEEECCccccccCCCCCc
Confidence 578899999999999999988876 32 59999999999999999988765432 478999999887543 34789
Q ss_pred cEEEEccCCCC----------chHHHHHhcCCCcEEEEEeCCC
Q 028002 145 DAIHVGAAAPE----------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~~~----------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|+|++...+++ +++++.++|+|||.+++.+++.
T Consensus 135 D~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 135 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 99999887744 3356889999999999988764
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-15 Score=115.24 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=84.1
Q ss_pred ccch-hHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHH---hCCCCeEEEEecChHHHHHHHHHHHhhcccCccc
Q 028002 48 TISA-PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALM---VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 123 (215)
Q Consensus 48 ~~~~-~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~ 123 (215)
.+.+ |.....+...+. ..++.+|||+|||+|..+..+++. +++.++|+++|+++.+++.|+. ..
T Consensus 62 ~~~~~p~~~~~l~~~l~--~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~~---- 129 (236)
T 2bm8_A 62 RMLKDPDTQAVYHDMLW--ELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DM---- 129 (236)
T ss_dssp ECCSCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GC----
T ss_pred cccCCHHHHHHHHHHHH--hcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------cC----
Confidence 3444 666666666655 334679999999999999999987 3556899999999999887761 11
Q ss_pred CCCeEEEeCCCCCC--CC--CCCCccEEEEccCCCCc---hHHHHH-hcCCCcEEEEE
Q 028002 124 EGSLSVHVGDGRKG--WP--EFAPYDAIHVGAAAPEI---PQALID-QLKPGGRMVIP 173 (215)
Q Consensus 124 ~~~v~~~~~d~~~~--~~--~~~~~D~V~~~~~~~~~---~~~~~~-~Lk~gG~lv~~ 173 (215)
.+++++++|+... ++ ...+||+|+++...... +.++.+ +|||||+|++.
T Consensus 130 -~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~ 186 (236)
T 2bm8_A 130 -ENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIE 186 (236)
T ss_dssp -TTEEEEECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEEC
T ss_pred -CceEEEECcchhHHHHHhhccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEE
Confidence 5899999998774 22 22379999988764333 345665 99999999994
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-15 Score=119.30 Aligned_cols=109 Identities=24% Similarity=0.316 Sum_probs=82.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccC-------------------------
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP------------------------- 120 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~------------------------- 120 (215)
..++.+|||+|||+|..+..+++.++. .+|+|+|+++.+++.|++++.......
T Consensus 44 ~~~~~~VLDiGCG~G~~~~~la~~~~~-~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (292)
T 3g07_A 44 WFRGRDVLDLGCNVGHLTLSIACKWGP-SRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRK 122 (292)
T ss_dssp GTTTSEEEEESCTTCHHHHHHHHHTCC-SEEEEEESCHHHHHHHHHTC--------------------------------
T ss_pred hcCCCcEEEeCCCCCHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 346789999999999999999998644 799999999999999998865433110
Q ss_pred ---------------------------cccCCCeEEEeCCCCCCC-----CCCCCccEEEEccCCCC------------c
Q 028002 121 ---------------------------LLKEGSLSVHVGDGRKGW-----PEFAPYDAIHVGAAAPE------------I 156 (215)
Q Consensus 121 ---------------------------~~~~~~v~~~~~d~~~~~-----~~~~~~D~V~~~~~~~~------------~ 156 (215)
..-..++.+.++|+.... ...++||+|++...+++ +
T Consensus 123 ~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~ 202 (292)
T 3g07_A 123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRM 202 (292)
T ss_dssp -------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence 000148999999987544 23478999999987643 3
Q ss_pred hHHHHHhcCCCcEEEEEeC
Q 028002 157 PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 157 ~~~~~~~Lk~gG~lv~~~~ 175 (215)
++++.++|+|||+|++...
T Consensus 203 l~~~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 203 FRRIYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHHHHEEEEEEEEEECC
T ss_pred HHHHHHHhCCCcEEEEecC
Confidence 4678899999999999643
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=113.72 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=84.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh---hcccCcccCCCeEEEeCCCCCCC----
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK---SAAAPLLKEGSLSVHVGDGRKGW---- 138 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~~~~~~~~~~v~~~~~d~~~~~---- 138 (215)
..++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++.. ++.. ++++++.+|+.+..
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~-----~~v~~~~~D~~~~~~~~~ 107 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFS-----ARIEVLEADVTLRAKARV 107 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTG-----GGEEEEECCTTCCHHHHH
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCc-----ceEEEEeCCHHHHhhhhh
Confidence 4567899999999999999999984 557999999999999999999876 5443 46999999998752
Q ss_pred ---CCCCCccEEEEccCCCC------------------------chHHHHHhcCCCcEEEEEeCC
Q 028002 139 ---PEFAPYDAIHVGAAAPE------------------------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 139 ---~~~~~~D~V~~~~~~~~------------------------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
...++||+|++++++.. +++.+.++|+|||++++.++.
T Consensus 108 ~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 108 EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp HTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 22378999999865432 345678899999999997765
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-15 Score=111.40 Aligned_cols=96 Identities=23% Similarity=0.193 Sum_probs=81.0
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
+.+|||+|||+|..+..+++. + .+++++|+++.+++.++++. .++.++.+|+.+.....++||+|+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-~--~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~fD~v~ 107 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-G--HQIEGLEPATRLVELARQTH-----------PSVTFHHGTITDLSDSPKRWAGLL 107 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-T--CCEEEECCCHHHHHHHHHHC-----------TTSEEECCCGGGGGGSCCCEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhC-----------CCCeEEeCcccccccCCCCeEEEE
Confidence 789999999999999999987 3 68999999999999998762 478999999877544447999999
Q ss_pred EccCCCCc--------hHHHHHhcCCCcEEEEEeCCCc
Q 028002 149 VGAAAPEI--------PQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 149 ~~~~~~~~--------~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
+...++++ ++++.++|+|||++++..++..
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 145 (203)
T 3h2b_A 108 AWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGP 145 (203)
T ss_dssp EESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred ehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 99887665 3578899999999999876543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=110.27 Aligned_cols=115 Identities=15% Similarity=0.127 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028002 54 MHATCLQLLEEN-LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 54 ~~~~~l~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
+...+++.+... ..++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++...+. .++.+..+
T Consensus 50 ~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~ 122 (207)
T 1jsx_A 50 LVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKL------ENIEPVQS 122 (207)
T ss_dssp HHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTC------SSEEEEEC
T ss_pred HHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEec
Confidence 345556655411 1147899999999999999999885 458999999999999999999887654 46999999
Q ss_pred CCCCCCCCCCCccEEEEccCC--CCchHHHHHhcCCCcEEEEEeCC
Q 028002 133 DGRKGWPEFAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 133 d~~~~~~~~~~~D~V~~~~~~--~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+....+. ++||+|++.... ..+++.+.++|+|||++++..+.
T Consensus 123 d~~~~~~~-~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 167 (207)
T 1jsx_A 123 RVEEFPSE-PPFDGVISRAFASLNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp CTTTSCCC-SCEEEEECSCSSSHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred chhhCCcc-CCcCEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 99876533 789999976532 23556788899999999998764
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=113.63 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=88.6
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.+.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++..++. .++.++.+|+.+. +..+.|
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a~~n~~~n~l------~~~~~~~~d~~~~-~~~~~~ 187 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYLCENIKLNKL------NNVIPILADNRDV-ELKDVA 187 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHHHHHHHHTTC------SSEEEEESCGGGC-CCTTCE
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEECChHHc-CccCCc
Confidence 46788999999999999999999985 346999999999999999999988765 4788999999876 434689
Q ss_pred cEEEEccCC--CCchHHHHHhcCCCcEEEEEeCC
Q 028002 145 DAIHVGAAA--PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~--~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+|+++.+. ..++..+.+.|+|||++++++..
T Consensus 188 D~Vi~d~p~~~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 188 DRVIMGYVHKTHKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp EEEEECCCSSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEECCcccHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 999999874 45678889999999999987653
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=114.31 Aligned_cols=111 Identities=9% Similarity=0.011 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
....+++.+. +.++.+|||+|||+|.++..+++.. .+|+++|+|+.|++.+++++.... ...++...+
T Consensus 33 ~~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~~~-------v~~~~~~~~ 100 (261)
T 3iv6_A 33 DRENDIFLEN--IVPGSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALADRC-------VTIDLLDIT 100 (261)
T ss_dssp HHHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSSSC-------CEEEECCTT
T ss_pred HHHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhcc-------ceeeeeecc
Confidence 4566677665 7788999999999999999999874 689999999999999998765420 122222222
Q ss_pred CCCCCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEeCCC
Q 028002 134 GRKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
........++||+|+++..++++ +..+.++| |||.++++++.+
T Consensus 101 ~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g 151 (261)
T 3iv6_A 101 AEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLG 151 (261)
T ss_dssp SCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred cccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence 20011113689999999887654 24567889 999999987653
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-14 Score=104.13 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=90.2
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028002 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
....+.+...+++.+. ..++.+|||+|||+|..+..+++ +..+++++|+++.+++.+++++...+. .++
T Consensus 17 ~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~ 85 (183)
T 2yxd_A 17 PITKEEIRAVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNI------KNC 85 (183)
T ss_dssp CCCCHHHHHHHHHHHC--CCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTC------CSE
T ss_pred CcCHHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCC------CcE
Confidence 3455556677777775 67788999999999999999987 237999999999999999999887654 479
Q ss_pred EEEeCCCCCCCCCCCCccEEEEccCCCC---chHHHHHhcCCCcEEEEEeCC
Q 028002 128 SVHVGDGRKGWPEFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 128 ~~~~~d~~~~~~~~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+++.+|+.+..+. ++||+|++... .. +++.+.++ |||.+++..++
T Consensus 86 ~~~~~d~~~~~~~-~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~~ 133 (183)
T 2yxd_A 86 QIIKGRAEDVLDK-LEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTIV 133 (183)
T ss_dssp EEEESCHHHHGGG-CCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEESC
T ss_pred EEEECCccccccC-CCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEecc
Confidence 9999998763333 68999999987 33 33445555 99999998765
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=113.29 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=83.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++... .++.++.+|+.......++||
T Consensus 91 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 91 GHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM--------PVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS--------SEEEEEESCGGGCCCCSSCEE
T ss_pred ccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC--------CceEEEEccHHHCCCCCCCeE
Confidence 4567899999999999999999885 268999999999999999876442 478999999877554447899
Q ss_pred EEEEccCCCCc--------hHHHHHhcCCCcEEEEEeC
Q 028002 146 AIHVGAAAPEI--------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 146 ~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~~ 175 (215)
+|++...++++ ++++.++|||||++++..+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 99999887766 3567899999999999775
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=119.73 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=87.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccC--cccCCCeEEEeCCCCCC------
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP--LLKEGSLSVHVGDGRKG------ 137 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~--~~~~~~v~~~~~d~~~~------ 137 (215)
..++.+|||+|||+|..+..+++..++..+|+++|+++.+++.+++++....... .....++.++.+|+...
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 4567899999999999999999987666899999999999999999876541100 01125899999998864
Q ss_pred CCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEe
Q 028002 138 WPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~ 174 (215)
....++||+|+++..++++ ++++.++|||||+|++..
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3344799999999887653 478899999999999964
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.2e-15 Score=115.30 Aligned_cols=103 Identities=21% Similarity=0.211 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC---CCC
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE---FAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~ 143 (215)
.++.+|||+|||+|..+..++... +..+|+++|+++.+++.+++++...+. .+++++++|+.+.... .++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l------~~v~~~~~d~~~~~~~~~~~~~ 151 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGL------KGARALWGRAEVLAREAGHREA 151 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEECCHHHHTTSTTTTTC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC------CceEEEECcHHHhhcccccCCC
Confidence 457899999999999999999884 568999999999999999999988765 4699999998764432 368
Q ss_pred ccEEEEccCC--CCchHHHHHhcCCCcEEEEEeCC
Q 028002 144 YDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 144 ~D~V~~~~~~--~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
||+|++.... ..+++.+.++|||||++++..+.
T Consensus 152 fD~I~s~a~~~~~~ll~~~~~~LkpgG~l~~~~g~ 186 (249)
T 3g89_A 152 YARAVARAVAPLCVLSELLLPFLEVGGAAVAMKGP 186 (249)
T ss_dssp EEEEEEESSCCHHHHHHHHGGGEEEEEEEEEEECS
T ss_pred ceEEEECCcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9999998654 34567788999999999987653
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=119.09 Aligned_cols=122 Identities=17% Similarity=0.191 Sum_probs=91.9
Q ss_pred ccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHH-------HHHHHh
Q 028002 43 IGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSS-------IQNIEK 115 (215)
Q Consensus 43 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a-------~~~~~~ 115 (215)
..+|... |..+..+++.+. +.++.+|||+|||+|.++..+++..+. .+|+|+|+++.+++.| ++++..
T Consensus 221 ~~yGet~--p~~v~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~-~~V~GVDis~~~l~~A~~Ml~~ar~~~~~ 295 (433)
T 1u2z_A 221 YVYGELL--PNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEELKKRCKL 295 (433)
T ss_dssp GCCCCBC--HHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc--HHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHhHHHHHHHHHH
Confidence 3444443 677888888876 788999999999999999999998643 5899999999999988 777766
Q ss_pred hcccCcccCCCeEEEeCCCCCC-CC---CCCCccEEEEccCCC-----CchHHHHHhcCCCcEEEEE
Q 028002 116 SAAAPLLKEGSLSVHVGDGRKG-WP---EFAPYDAIHVGAAAP-----EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 116 ~~~~~~~~~~~v~~~~~d~~~~-~~---~~~~~D~V~~~~~~~-----~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+. ...+++++.+|.... ++ ..++||+|+++..+. ..+.++.+.|||||.++++
T Consensus 296 ~Gl----~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 296 YGM----RLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp TTB----CCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cCC----CCCceEEEEcCccccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEe
Confidence 552 125899998765422 11 126899999875442 2335788999999999996
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=111.90 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
....+.+.+.....++.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++...+ .++.+..+|
T Consensus 23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~s~~~~~~a~~~~~~~~-------~~~~~~~~d 92 (246)
T 1y8c_A 23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK-F--KNTWAVDLSQEMLSEAENKFRSQG-------LKPRLACQD 92 (246)
T ss_dssp HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG-S--SEEEEECSCHHHHHHHHHHHHHTT-------CCCEEECCC
T ss_pred HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC-C--CcEEEEECCHHHHHHHHHHHhhcC-------CCeEEEecc
Confidence 345555665533346789999999999999999887 3 689999999999999999886643 268899999
Q ss_pred CCCCCCCCCCccEEEEcc-CCCCc---------hHHHHHhcCCCcEEEEEeCC
Q 028002 134 GRKGWPEFAPYDAIHVGA-AAPEI---------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~-~~~~~---------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+...... ++||+|++.. .++++ ++++.++|+|||++++.+++
T Consensus 93 ~~~~~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 93 ISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp GGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cccCCcc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 8775544 7899999998 77665 24678999999999997764
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=114.00 Aligned_cols=106 Identities=18% Similarity=0.171 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ..++.+|||+|||+|..+..+++. + .+|+++|+++.+++.+++++...+ .++.+..+|+.
T Consensus 110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~-g--~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~ 177 (286)
T 3m70_A 110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL-G--YDVTSWDHNENSIAFLNETKEKEN-------LNISTALYDIN 177 (286)
T ss_dssp HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCGG
T ss_pred HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHHHcC-------CceEEEEeccc
Confidence 34555555 347889999999999999999987 3 689999999999999999987754 27899999988
Q ss_pred CCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEEe
Q 028002 136 KGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~ 174 (215)
.... .++||+|++...+++ +++.+.++|+|||.+++..
T Consensus 178 ~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 178 AANI-QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp GCCC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccc-cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 7655 489999999987754 3457889999999987754
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-15 Score=118.39 Aligned_cols=106 Identities=23% Similarity=0.197 Sum_probs=86.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----CC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~ 141 (215)
..++.+|||+|||+|..+..+++.++..++|+++|+++.+++.+++++...+. .+++++.+|+..... ..
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~------~~v~~~~~D~~~~~~~~~~~~ 154 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV------LNTIIINADMRKYKDYLLKNE 154 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCHHHHHHHHHHTT
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC------CcEEEEeCChHhcchhhhhcc
Confidence 67889999999999999999998864447999999999999999999987654 489999999865432 13
Q ss_pred CCccEEEEccCCC------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 142 APYDAIHVGAAAP------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 142 ~~~D~V~~~~~~~------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+.||+|+++.++. .+++.+.++|||||+|++++++.
T Consensus 155 ~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 155 IFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp CCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 6899999986542 23456788999999999987653
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=110.38 Aligned_cols=97 Identities=23% Similarity=0.327 Sum_probs=80.1
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.+.++.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++ ++.+..+|+.... ..++|
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~------------~~~~~~~d~~~~~-~~~~f 103 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAA-G--FDVDATDGSPELAAEASRRL------------GRPVRTMLFHQLD-AIDAY 103 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHH------------TSCCEECCGGGCC-CCSCE
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHc-C--CeEEEECCCHHHHHHHHHhc------------CCceEEeeeccCC-CCCcE
Confidence 4667899999999999999999987 3 69999999999999998875 3456677776655 44899
Q ss_pred cEEEEccCCCCch--------HHHHHhcCCCcEEEEEeCCC
Q 028002 145 DAIHVGAAAPEIP--------QALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|+|++...++++. +++.++|||||++++.++..
T Consensus 104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 144 (211)
T 3e23_A 104 DAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSG 144 (211)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred EEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 9999998886654 57889999999999987653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.2e-15 Score=115.16 Aligned_cols=99 Identities=14% Similarity=0.022 Sum_probs=77.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC--CCCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~ 143 (215)
..++.+|||+|||+|..+..+++. ++ .+++++|+|+.+++.|+++....+ .++.++.+|+.+. ....++
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~-------~~v~~~~~d~~~~~~~~~~~~ 128 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEA-PI-DEHWIIECNDGVFQRLRDWAPRQT-------HKVIPLKGLWEDVAPTLPDGH 128 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTS-CE-EEEEEEECCHHHHHHHHHHGGGCS-------SEEEEEESCHHHHGGGSCTTC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhc-CC-CeEEEEcCCHHHHHHHHHHHHhcC-------CCeEEEecCHHHhhcccCCCc
Confidence 467889999999999999999764 33 589999999999999998775533 4789999998764 333478
Q ss_pred ccEEEE-ccCC-----C-----CchHHHHHhcCCCcEEEEE
Q 028002 144 YDAIHV-GAAA-----P-----EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~-~~~~-----~-----~~~~~~~~~Lk~gG~lv~~ 173 (215)
||+|++ .... + .+++++.++|||||+|++.
T Consensus 129 fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 129 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 999999 3221 1 1256789999999999975
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-14 Score=111.15 Aligned_cols=100 Identities=20% Similarity=0.228 Sum_probs=81.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|..+..+++. + .+++++|+|+.+++.+++++...+ .++.++.+|+...... ++||
T Consensus 39 ~~~~~~vLDlGcG~G~~~~~l~~~-~--~~v~gvD~s~~~l~~a~~~~~~~~-------~~v~~~~~d~~~~~~~-~~fD 107 (252)
T 1wzn_A 39 KREVRRVLDLACGTGIPTLELAER-G--YEVVGLDLHEEMLRVARRKAKERN-------LKIEFLQGDVLEIAFK-NEFD 107 (252)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTT-------CCCEEEESCGGGCCCC-SCEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHC-C--CeEEEEECCHHHHHHHHHHHHhcC-------CceEEEECChhhcccC-CCcc
Confidence 356789999999999999999987 3 689999999999999999887643 3689999998875444 6899
Q ss_pred EEEEccCC-C--------CchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAA-P--------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~-~--------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++.... . .+++.+.++|+|||.+++.+++
T Consensus 108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 99986432 1 2345788999999999998765
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=112.92 Aligned_cols=100 Identities=16% Similarity=0.235 Sum_probs=82.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|..+..+++. +. .+++++|+++.+++.++++... .++.+..+|+.......++||
T Consensus 41 ~~~~~~vLdiG~G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~~~~~~fD 109 (243)
T 3bkw_A 41 EVGGLRIVDLGCGFGWFCRWAHEH-GA-SYVLGLDLSEKMLARARAAGPD---------TGITYERADLDKLHLPQDSFD 109 (243)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHTSCS---------SSEEEEECCGGGCCCCTTCEE
T ss_pred ccCCCEEEEEcCcCCHHHHHHHHC-CC-CeEEEEcCCHHHHHHHHHhccc---------CCceEEEcChhhccCCCCCce
Confidence 457889999999999999999887 33 4899999999999999876432 478999999877554447899
Q ss_pred EEEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++...++++ ++++.++|+|||++++.+++
T Consensus 110 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 110 LAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 99999877554 46788999999999998755
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-14 Score=111.12 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=85.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcc--cCCCeEEEeCCCCCCC---CC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL--KEGSLSVHVGDGRKGW---PE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~--~~~~v~~~~~d~~~~~---~~ 140 (215)
+.++.+|||+|||+|.++..+++.. +..+++|+|+|+.+++.+++++......... ...++.++.+|+.+.+ ..
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc
Confidence 4567899999999999999999984 6579999999999999999988765211100 2258999999987633 23
Q ss_pred CCCccEEEEccCCC--------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 141 FAPYDAIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 141 ~~~~D~V~~~~~~~--------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.+.+|.|+...+.+ .++..+.++|+|||.|++.+..
T Consensus 126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence 47899987665443 4667889999999999997654
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=111.42 Aligned_cols=101 Identities=26% Similarity=0.372 Sum_probs=82.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---CCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~ 142 (215)
+.++.+|||+|||+|.++..+++.+++.++|+++|+++.+++.+++++... .++.++.+|+.... ...+
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--------~~v~~~~~d~~~~~~~~~~~~ 142 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--------RNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--------TTEEEEECCTTCGGGGTTTCC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--------CCCEEEEccCCCcchhhcccC
Confidence 567889999999999999999998766689999999999999998877542 48999999987621 1225
Q ss_pred CccEEEEccCCCC----chHHHHHhcCCCcEEEEEe
Q 028002 143 PYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 143 ~~D~V~~~~~~~~----~~~~~~~~Lk~gG~lv~~~ 174 (215)
+||+|+++.+... ++.++.++|||||++++.+
T Consensus 143 ~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 143 KVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 8999999877543 2577899999999999974
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-14 Score=111.00 Aligned_cols=105 Identities=24% Similarity=0.287 Sum_probs=83.9
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC
Q 028002 60 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 139 (215)
Q Consensus 60 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 139 (215)
+.+...+.++.+|||+|||+|..+..+++. .+++++|+++.+++.+++++...+ .++.+..+|+.....
T Consensus 25 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~ 93 (243)
T 3d2l_A 25 AWVLEQVEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN-------RHVDFWVQDMRELEL 93 (243)
T ss_dssp HHHHHHSCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT-------CCCEEEECCGGGCCC
T ss_pred HHHHHHcCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC-------CceEEEEcChhhcCC
Confidence 333334667799999999999999888765 589999999999999999887643 478999999877544
Q ss_pred CCCCccEEEEcc-CCCCc---------hHHHHHhcCCCcEEEEEeCC
Q 028002 140 EFAPYDAIHVGA-AAPEI---------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 140 ~~~~~D~V~~~~-~~~~~---------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
. ++||+|++.. .++++ ++.+.++|+|||.+++.+++
T Consensus 94 ~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 94 P-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp S-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred C-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 4 7899999875 55443 35678999999999997754
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.7e-16 Score=117.69 Aligned_cols=113 Identities=20% Similarity=0.312 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
+...+++.+. ...++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...+. +++++++|
T Consensus 17 ~~~~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~~~~~~d 87 (215)
T 4dzr_A 17 LVEEAIRFLK-RMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGA-------VVDWAAAD 87 (215)
T ss_dssp HHHHHHHHHT-TCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC--------------------------CCHHH
T ss_pred HHHHHHHHhh-hcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCC-------ceEEEEcc
Confidence 3444455543 12678899999999999999999984 557999999999999999988766431 57777777
Q ss_pred CCCCCCC----CCCccEEEEccCCCC--------------------------------chHHHHHhcCCCcE-EEEEeC
Q 028002 134 GRKGWPE----FAPYDAIHVGAAAPE--------------------------------IPQALIDQLKPGGR-MVIPVG 175 (215)
Q Consensus 134 ~~~~~~~----~~~~D~V~~~~~~~~--------------------------------~~~~~~~~Lk~gG~-lv~~~~ 175 (215)
+.+.... .++||+|+++.++.. +++.+.++|||||+ +++.++
T Consensus 88 ~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 88 GIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp HHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred hHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 7652221 278999999866521 22345688999999 666654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=6.9e-15 Score=113.21 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=87.5
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.++..+. ...++.+|||+|||+|..+..+++.+++..+++++|+++.+++.+++++...+.. .+++++.+|+.+
T Consensus 59 ~~l~~l~-~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-----~~i~~~~~d~~~ 132 (229)
T 2avd_A 59 QLLANLA-RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE-----HKIDLRLKPALE 132 (229)
T ss_dssp HHHHHHH-HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT-----TTEEEEESCHHH
T ss_pred HHHHHHH-HhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-----CeEEEEEcCHHH
Confidence 3444443 2556789999999999999999987644589999999999999999999876653 589999998754
Q ss_pred CCCC---C---CCccEEEEccCCC---CchHHHHHhcCCCcEEEEE
Q 028002 137 GWPE---F---APYDAIHVGAAAP---EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 ~~~~---~---~~~D~V~~~~~~~---~~~~~~~~~Lk~gG~lv~~ 173 (215)
.... . ++||+|+++.... .+++.+.++|+|||++++.
T Consensus 133 ~~~~~~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 133 TLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp HHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHhcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 3211 1 5799999988755 3567888999999999984
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=112.49 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+.. ..++.+|||+|||+|+.+..+++.+++.++++++|+++.+++.|++++...+.. ++++++.+|+
T Consensus 58 ~~~~l~~l~~-~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-----~~i~~~~gda 131 (237)
T 3c3y_A 58 AGQLMSFVLK-LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE-----HKINFIESDA 131 (237)
T ss_dssp HHHHHHHHHH-HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-----GGEEEEESCH
T ss_pred HHHHHHHHHH-hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCH
Confidence 3445555432 445689999999999999999998754689999999999999999999876653 5799999998
Q ss_pred CCCCC-------CCCCccEEEEccCCCC---chHHHHHhcCCCcEEEEE
Q 028002 135 RKGWP-------EFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 135 ~~~~~-------~~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~ 173 (215)
.+..+ ..++||+|+++..... +++.+.++|+|||++++.
T Consensus 132 ~~~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 132 MLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp HHHHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEe
Confidence 65322 1368999999876543 457788999999999885
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=114.09 Aligned_cols=104 Identities=32% Similarity=0.425 Sum_probs=85.4
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ..++.+|||+|||+|..+..+++. ..+|+++|+|+.+++.+++++ .++.+..+|+.
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~ 110 (279)
T 3ccf_A 47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQS---GAEVLGTDNAATMIEKARQNY-----------PHLHFDVADAR 110 (279)
T ss_dssp CHHHHHHC--CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC-----------TTSCEEECCTT
T ss_pred HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHhhC-----------CCCEEEECChh
Confidence 44556665 677889999999999999999883 279999999999999998753 36788999987
Q ss_pred CCCCCCCCccEEEEccCCCC------chHHHHHhcCCCcEEEEEeCC
Q 028002 136 KGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.... .++||+|++...+++ +++++.++|||||++++.+++
T Consensus 111 ~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 111 NFRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp TCCC-SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCCc-CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 7544 378999999988765 346789999999999997764
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=110.21 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=86.0
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..++..+.. ..++.+|||+|||+|..+..+++.+++.++++++|+++.+++.|++++...+.. ++++++.+|..
T Consensus 45 ~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~ 118 (210)
T 3c3p_A 45 GRLLYLLAR-IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI-----DRVELQVGDPL 118 (210)
T ss_dssp HHHHHHHHH-HHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG-----GGEEEEESCHH
T ss_pred HHHHHHHHH-hhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-----ceEEEEEecHH
Confidence 344444331 345679999999999999999988643589999999999999999999876653 57999999986
Q ss_pred CCCC-CCCCccEEEEccCCCC---chHHHHHhcCCCcEEEEE
Q 028002 136 KGWP-EFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 136 ~~~~-~~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~ 173 (215)
+..+ ..+ ||+|+++..... +++.+.++|+|||++++.
T Consensus 119 ~~~~~~~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 119 GIAAGQRD-IDILFMDCDVFNGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp HHHTTCCS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHhccCCC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEE
Confidence 5322 225 999999876543 456788999999999984
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-14 Score=114.21 Aligned_cols=114 Identities=13% Similarity=0.179 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
....+++.+. .++.+|||+|||+|.++..+++. + .+|+++|+++.+++.+++++...+.. ...+++++++|
T Consensus 71 ~~~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~-~--~~v~gvD~s~~~~~~a~~~~~~~~~~---~~~~v~~~~~d 141 (299)
T 3g2m_A 71 EAREFATRTG---PVSGPVLELAAGMGRLTFPFLDL-G--WEVTALELSTSVLAAFRKRLAEAPAD---VRDRCTLVQGD 141 (299)
T ss_dssp HHHHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT-T--CCEEEEESCHHHHHHHHHHHHTSCHH---HHTTEEEEECB
T ss_pred HHHHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc-C--CeEEEEECCHHHHHHHHHHHhhcccc---cccceEEEeCc
Confidence 3455555553 33459999999999999999987 3 68999999999999999988764310 00379999999
Q ss_pred CCCCCCCCCCccEEEEcc-CCC--------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 134 GRKGWPEFAPYDAIHVGA-AAP--------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~-~~~--------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+..... .++||+|++.. .++ .+++++.++|||||+|++.+++.
T Consensus 142 ~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 142 MSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp TTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred hhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 987655 48999998653 232 23467889999999999988664
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-15 Score=115.74 Aligned_cols=99 Identities=14% Similarity=0.033 Sum_probs=77.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~ 143 (215)
..++.+|||||||+|..+..+++. .+ .+++++|+++.+++.|+++....+ .++.++.+++.... ...++
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~-~~-~~v~~id~~~~~~~~a~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~ 128 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEA-PI-DEHWIIECNDGVFQRLRDWAPRQT-------HKVIPLKGLWEDVAPTLPDGH 128 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTS-CE-EEEEEEECCHHHHHHHHHHGGGCS-------SEEEEEESCHHHHGGGSCTTC
T ss_pred ccCCCeEEEECCCccHHHHHHHHh-CC-cEEEEEeCCHHHHHHHHHHHhhCC-------CceEEEeehHHhhcccccccC
Confidence 567899999999999999999876 34 689999999999999999876543 47788888865421 23378
Q ss_pred ccEEEEccCC-----CC------chHHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAAA-----PE------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~-----~~------~~~~~~~~Lk~gG~lv~~ 173 (215)
||.|+.+... .+ +.+++.++|||||+|++.
T Consensus 129 FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 129 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred CceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 9999876543 22 335789999999999874
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=112.88 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC---CCC
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE---FAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~ 143 (215)
.++.+|||+|||+|..+..++.. .+..+|+++|+++.+++.+++++...+. .+++++++|+.+.... .++
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~~~~ 141 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKIC-FPHLHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDRAETFGQRKDVRES 141 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHH-CTTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESCHHHHTTCTTTTTC
T ss_pred CCCCEEEEecCCCCHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEeccHHHhcccccccCC
Confidence 46789999999999999999876 3557999999999999999999887664 4799999988654321 368
Q ss_pred ccEEEEccCC--CCchHHHHHhcCCCcEEEEEeCC
Q 028002 144 YDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 144 ~D~V~~~~~~--~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
||+|++.... ..+++.+.++|+|||.+++..+.
T Consensus 142 fD~V~~~~~~~~~~~l~~~~~~LkpgG~l~~~~g~ 176 (240)
T 1xdz_A 142 YDIVTARAVARLSVLSELCLPLVKKNGLFVALKAA 176 (240)
T ss_dssp EEEEEEECCSCHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred ccEEEEeccCCHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9999988743 23456778999999999987543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=110.02 Aligned_cols=106 Identities=18% Similarity=0.195 Sum_probs=85.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+.++.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++...+... ....++.+..+|........++||
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~D 103 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK-G--YSVTGIDINSEAIRLAETAARSPGLNQ-KTGGKAEFKVENASSLSFHDSSFD 103 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHTTCCSCCS-SSSCEEEEEECCTTSCCSCTTCEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC-C--CeEEEEECCHHHHHHHHHHHHhcCCcc-ccCcceEEEEecccccCCCCCcee
Confidence 667899999999999999999987 3 699999999999999998876644311 112368999999887655557899
Q ss_pred EEEEccCCCCc---------hHHHHHhcCCCcEEEEEeC
Q 028002 146 AIHVGAAAPEI---------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 146 ~V~~~~~~~~~---------~~~~~~~Lk~gG~lv~~~~ 175 (215)
+|++...++++ ++++.++|+|||++++...
T Consensus 104 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 104 FAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp EEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 99998876543 4567899999999999754
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-14 Score=116.36 Aligned_cols=116 Identities=19% Similarity=0.129 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh-------hcccCccc
Q 028002 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-------SAAAPLLK 123 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-------~~~~~~~~ 123 (215)
.+..+..+++.+. +.++.+|||+|||+|..+..++...+ ..+++|+|+++.+++.|+++... .+. .
T Consensus 158 ~~~~i~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl----~ 230 (438)
T 3uwp_A 158 SFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGK----K 230 (438)
T ss_dssp HHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB----C
T ss_pred CHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC----C
Confidence 4556778888876 88999999999999999999998754 35799999999999999876532 222 1
Q ss_pred CCCeEEEeCCCCCCCCCC--CCccEEEEccCCCC-----chHHHHHhcCCCcEEEEE
Q 028002 124 EGSLSVHVGDGRKGWPEF--APYDAIHVGAAAPE-----IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 124 ~~~v~~~~~d~~~~~~~~--~~~D~V~~~~~~~~-----~~~~~~~~Lk~gG~lv~~ 173 (215)
..+++++++|+.+..... +.||+|+++..+.. .+.++.+.|||||+|++.
T Consensus 231 ~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 231 HAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp CCEEEEEECCTTSHHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred CCCeEEEECcccCCccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEe
Confidence 258999999998743321 36999999876422 234678999999999985
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-14 Score=109.04 Aligned_cols=103 Identities=25% Similarity=0.356 Sum_probs=83.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---CCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~ 142 (215)
+.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+.++.... .++.++.+|+.... ...+
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--------~~v~~~~~d~~~~~~~~~~~~ 146 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--------TNIIPVIEDARHPHKYRMLIA 146 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--------TTEEEECSCTTCGGGGGGGCC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--------CCeEEEEcccCChhhhcccCC
Confidence 567889999999999999999998766689999999999888877766542 47899999987632 1236
Q ss_pred CccEEEEccCCCC----chHHHHHhcCCCcEEEEEeCC
Q 028002 143 PYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 143 ~~D~V~~~~~~~~----~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+||+|+++.+..+ +..++.+.|||||.+++.+..
T Consensus 147 ~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 147 MVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKA 184 (233)
T ss_dssp CEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 8999999876443 245688999999999997654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-14 Score=113.37 Aligned_cols=122 Identities=16% Similarity=0.084 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccC-cccCCCeEEEeC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP-LLKEGSLSVHVG 132 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~-~~~~~~v~~~~~ 132 (215)
+...+++.+.....++.+|||+|||+|..+..+++. +..+++++|+++.+++.+++++....... .....++.++++
T Consensus 20 l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 97 (313)
T 3bgv_A 20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA 97 (313)
T ss_dssp HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC
T ss_pred HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe
Confidence 344555555533457789999999999999998874 23799999999999999999886542100 001147899999
Q ss_pred CCCCCC----C--CCCCccEEEEccCCCCc----------hHHHHHhcCCCcEEEEEeCCC
Q 028002 133 DGRKGW----P--EFAPYDAIHVGAAAPEI----------PQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 133 d~~~~~----~--~~~~~D~V~~~~~~~~~----------~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|+.... . ..++||+|++...++++ ++++.++|||||.+++++++.
T Consensus 98 D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 98 DSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp CTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred cccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 987653 2 23589999999888554 356789999999999998864
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.2e-14 Score=107.90 Aligned_cols=106 Identities=19% Similarity=0.273 Sum_probs=83.3
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+.+.+.....++.+|||+|||+|..+..+++.. .+++++|+++.+++.+++++ .++.+..+|+
T Consensus 27 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-----------~~~~~~~~d~ 92 (239)
T 3bxo_A 27 ASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-----------PDATLHQGDM 92 (239)
T ss_dssp HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-----------TTCEEEECCT
T ss_pred HHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-----------CCCEEEECCH
Confidence 334445554445678899999999999999999986 48999999999999998753 4688999998
Q ss_pred CCCCCCCCCccEEEEcc-CCCCc---------hHHHHHhcCCCcEEEEEeC
Q 028002 135 RKGWPEFAPYDAIHVGA-AAPEI---------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~-~~~~~---------~~~~~~~Lk~gG~lv~~~~ 175 (215)
..... .++||+|++.. .++++ ++.+.++|+|||.+++...
T Consensus 93 ~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 93 RDFRL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp TTCCC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred HHccc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 77544 47899999654 44433 3568899999999999754
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.54 E-value=6.2e-14 Score=110.46 Aligned_cols=109 Identities=24% Similarity=0.301 Sum_probs=86.1
Q ss_pred HHHHHHHHhcC-CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 56 ATCLQLLEENL-KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 56 ~~~l~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
..+.+.+.... .++.+|||+|||+|.++..+++.+ +..+++++|+++.+++.++++. .++.+..+|.
T Consensus 72 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~ 139 (269)
T 1p91_A 72 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY-----------PQVTFCVASS 139 (269)
T ss_dssp HHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCT
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC-----------CCcEEEEcch
Confidence 33444443323 578899999999999999999875 3479999999999999998753 4678899988
Q ss_pred CCCCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEeCCC
Q 028002 135 RKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.......++||+|++... ...++++.++|||||.+++..++.
T Consensus 140 ~~~~~~~~~fD~v~~~~~-~~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 140 HRLPFSDTSMDAIIRIYA-PCKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp TSCSBCTTCEEEEEEESC-CCCHHHHHHHEEEEEEEEEEEECT
T ss_pred hhCCCCCCceeEEEEeCC-hhhHHHHHHhcCCCcEEEEEEcCH
Confidence 765444478999998765 467899999999999999987653
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=112.71 Aligned_cols=108 Identities=18% Similarity=0.124 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028002 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
.+.+...+++.+. ..++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++ .++.++
T Consensus 19 ~~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~------------~~~~~~ 81 (261)
T 3ege_A 19 DIRIVNAIINLLN--LPKGSVIADIGAGTGGYSVALANQ---GLFVYAVEPSIVMRQQAVVH------------PQVEWF 81 (261)
T ss_dssp CHHHHHHHHHHHC--CCTTCEEEEETCTTSHHHHHHHTT---TCEEEEECSCHHHHHSSCCC------------TTEEEE
T ss_pred cHHHHHHHHHHhC--CCCCCEEEEEcCcccHHHHHHHhC---CCEEEEEeCCHHHHHHHHhc------------cCCEEE
Confidence 3445666777765 677899999999999999999874 27999999999998876532 278999
Q ss_pred eCCCCCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028002 131 VGDGRKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 131 ~~d~~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.+|+.+.....++||+|++...++++ ++++.++|| ||++++...+
T Consensus 82 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 82 TGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp CCCTTSCCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred ECchhhCCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 99998755555899999999887654 467899999 9987776544
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-14 Score=120.24 Aligned_cols=103 Identities=20% Similarity=0.266 Sum_probs=85.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~ 146 (215)
++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++...+. .++.++.+|+..... ..+.||+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~------~nv~~~~~D~~~~~~~~~~~fD~ 190 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI------SNVALTHFDGRVFGAAVPEMFDA 190 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCCSTTHHHHSTTCEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHhhhhccccCCE
Confidence 889999999999999999999876568999999999999999999988765 579999999876432 2368999
Q ss_pred EEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 147 IHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 147 V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+++.++. .+++.+.++|||||+|++++++
T Consensus 191 Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 191 ILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp EEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 99976541 1235577899999999998765
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=115.96 Aligned_cols=108 Identities=14% Similarity=0.055 Sum_probs=77.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC--------CC
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--------WP 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~--------~~ 139 (215)
++.+|||+|||+|..+..++.. + ..+|+|+|+|+.+++.|+++....+......+-++++.+.++... ..
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-E-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-C-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 4789999999999866666554 2 268999999999999999988664321000001366777776321 12
Q ss_pred CCCCccEEEEccCCCC---------chHHHHHhcCCCcEEEEEeCCC
Q 028002 140 EFAPYDAIHVGAAAPE---------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~---------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
..++||+|+|...++. +++++.++|||||++++++++.
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 2378999998876532 3467899999999999998864
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.6e-14 Score=108.44 Aligned_cols=99 Identities=20% Similarity=0.245 Sum_probs=81.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC----CCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~----~~~~~ 141 (215)
+.++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+++++... .++.++.+|+.. ....
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--------~~v~~~~~d~~~~~~~~~~~- 141 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER--------ENIIPILGDANKPQEYANIV- 141 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC--------TTEEEEECCTTCGGGGTTTS-
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC--------CCeEEEECCCCCcccccccC-
Confidence 56788999999999999999999865 579999999999999998876432 589999999876 4334
Q ss_pred CCccEEEEccCCC----CchHHHHHhcCCCcEEEEEe
Q 028002 142 APYDAIHVGAAAP----EIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 142 ~~~D~V~~~~~~~----~~~~~~~~~Lk~gG~lv~~~ 174 (215)
++||+|+...... .+++++.+.|+|||.+++.+
T Consensus 142 ~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 178 (230)
T 1fbn_A 142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEEE
Confidence 6899999764433 24678899999999999963
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=112.05 Aligned_cols=101 Identities=20% Similarity=0.195 Sum_probs=82.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++...+. .++.++.+|+.......++||+|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~v 150 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCCGLQDFTPEPDSYDVI 150 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGG------GEEEEEECCGGGCCCCSSCEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCC------ceEEEEEcChhhcCCCCCCEEEE
Confidence 57899999999999999988774 26999999999999999998766431 47889999987665554689999
Q ss_pred EEccCCCCc--------hHHHHHhcCCCcEEEEEeCC
Q 028002 148 HVGAAAPEI--------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 148 ~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
++...++++ ++++.++|+|||++++..+.
T Consensus 151 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 187 (241)
T 2ex4_A 151 WIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM 187 (241)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 999876554 35678999999999996543
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.6e-15 Score=108.79 Aligned_cols=106 Identities=11% Similarity=0.010 Sum_probs=82.1
Q ss_pred HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC
Q 028002 58 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 137 (215)
Q Consensus 58 ~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 137 (215)
+...+..++.+..+|||+|||+|.++..++.. .|..+|+++|+|+.+++.+++++...+.. .++.+ .|....
T Consensus 39 fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~-~p~a~~~A~Di~~~~leiar~~~~~~g~~-----~~v~~--~d~~~~ 110 (200)
T 3fzg_A 39 FYTYVFGNIKHVSSILDFGCGFNPLALYQWNE-NEKIIYHAYDIDRAEIAFLSSIIGKLKTT-----IKYRF--LNKESD 110 (200)
T ss_dssp HHHHHHHHSCCCSEEEEETCTTHHHHHHHHCS-SCCCEEEEECSCHHHHHHHHHHHHHSCCS-----SEEEE--ECCHHH
T ss_pred HHHHHHhhcCCCCeEEEecCCCCHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHhcCCC-----ccEEE--eccccc
Confidence 33333334677899999999999999999877 46679999999999999999999886653 24555 555544
Q ss_pred CCCCCCccEEEEccCCCCch------HHHHHhcCCCcEEEE
Q 028002 138 WPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVI 172 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~------~~~~~~Lk~gG~lv~ 172 (215)
.++ ++||+|+....+|.+. ..+.+.|+|||.+|-
T Consensus 111 ~~~-~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfIS 150 (200)
T 3fzg_A 111 VYK-GTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVIS 150 (200)
T ss_dssp HTT-SEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEE
T ss_pred CCC-CCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEE
Confidence 443 7899999998886652 368999999998764
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-14 Score=110.75 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=77.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC--CCCCC
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEFA 142 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~ 142 (215)
.+.++.+|||+|||+|.++..+++. + .+++++|+|+.+++.+++ ++.++.+|..+. ....+
T Consensus 38 ~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~gvD~s~~~~~~a~~--------------~~~~~~~d~~~~~~~~~~~ 100 (240)
T 3dli_A 38 YFKGCRRVLDIGCGRGEFLELCKEE-G--IESIGVDINEDMIKFCEG--------------KFNVVKSDAIEYLKSLPDK 100 (240)
T ss_dssp GTTTCSCEEEETCTTTHHHHHHHHH-T--CCEEEECSCHHHHHHHHT--------------TSEEECSCHHHHHHTSCTT
T ss_pred hhcCCCeEEEEeCCCCHHHHHHHhC-C--CcEEEEECCHHHHHHHHh--------------hcceeeccHHHHhhhcCCC
Confidence 4567899999999999999999887 3 579999999999998874 367778877653 22337
Q ss_pred CccEEEEccCCCCch--------HHHHHhcCCCcEEEEEeCCC
Q 028002 143 PYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+||+|++...++++. +++.++|||||++++.+++.
T Consensus 101 ~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 143 (240)
T 3dli_A 101 YLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNP 143 (240)
T ss_dssp CBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred CeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 899999998876543 57889999999999988664
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5e-15 Score=114.91 Aligned_cols=110 Identities=16% Similarity=0.080 Sum_probs=87.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+...+. ...++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.+++++...+.. .+++++++|+
T Consensus 66 ~~~l~~~~~-~~~~~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~d~ 136 (241)
T 3gdh_A 66 AEHIAGRVS-QSFKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIA-----DKIEFICGDF 136 (241)
T ss_dssp HHHHHHHHH-HHSCCSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCG-----GGEEEEESCH
T ss_pred HHHHHHHhh-hccCCCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCC-----cCeEEEECCh
Confidence 444444443 23468999999999999999999873 79999999999999999999876653 4899999998
Q ss_pred CCCCCCCCCccEEEEccCCCCch------HHHHHhcCCCcEEEEEe
Q 028002 135 RKGWPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~~~------~~~~~~Lk~gG~lv~~~ 174 (215)
..... .++||+|+++.++++.. .++.++|+|||.+++..
T Consensus 137 ~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 137 LLLAS-FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp HHHGG-GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred HHhcc-cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence 76543 37899999998886533 24678899999877653
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-14 Score=112.85 Aligned_cols=112 Identities=25% Similarity=0.362 Sum_probs=86.8
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..++..+.. ..++.+|||+|||+|..+..+++.+++.++++++|+++.+++.|++++...+.. ++++++.+|+.
T Consensus 61 ~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-----~~i~~~~~d~~ 134 (232)
T 3cbg_A 61 AQFLGLLIS-LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA-----EKISLRLGPAL 134 (232)
T ss_dssp HHHHHHHHH-HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-----GGEEEEESCHH
T ss_pred HHHHHHHHH-hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCHH
Confidence 344444331 445679999999999999999988654579999999999999999998876653 47999999875
Q ss_pred CCCC----CC--CCccEEEEccCCC---CchHHHHHhcCCCcEEEEE
Q 028002 136 KGWP----EF--APYDAIHVGAAAP---EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 136 ~~~~----~~--~~~D~V~~~~~~~---~~~~~~~~~Lk~gG~lv~~ 173 (215)
+..+ .. ++||+|+++.... .+++.+.++|+|||++++.
T Consensus 135 ~~l~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 135 ATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp HHHHHHHTSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHhcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4221 11 6799999987643 3457888999999999985
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.4e-14 Score=105.74 Aligned_cols=102 Identities=22% Similarity=0.236 Sum_probs=81.2
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC
Q 028002 60 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 139 (215)
Q Consensus 60 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 139 (215)
+.+.....++.+|||+|||+|..+..+ +. .+++++|+++.+++.+++++ .++.++.+|......
T Consensus 28 ~~l~~~~~~~~~vLdiG~G~G~~~~~l----~~-~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~~~~ 91 (211)
T 2gs9_A 28 RALKGLLPPGESLLEVGAGTGYWLRRL----PY-PQKVGVEPSEAMLAVGRRRA-----------PEATWVRAWGEALPF 91 (211)
T ss_dssp HHHHTTCCCCSEEEEETCTTCHHHHHC----CC-SEEEEECCCHHHHHHHHHHC-----------TTSEEECCCTTSCCS
T ss_pred HHHHHhcCCCCeEEEECCCCCHhHHhC----CC-CeEEEEeCCHHHHHHHHHhC-----------CCcEEEEcccccCCC
Confidence 334333457889999999999988776 21 38999999999999998764 367889999877554
Q ss_pred CCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEeCCC
Q 028002 140 EFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
..++||+|++...++++ ++++.++|||||.+++..++.
T Consensus 92 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 92 PGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp CSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 55789999999888765 357889999999999987664
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.1e-15 Score=123.58 Aligned_cols=104 Identities=23% Similarity=0.240 Sum_probs=85.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~ 144 (215)
..++.+|||+|||+|..+..+++.++..++|+++|+++.+++.+++++...+. . +.++.+|+..... ..+.|
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~------~-v~~~~~Da~~l~~~~~~~F 171 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA------P-LAVTQAPPRALAEAFGTYF 171 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC------C-CEEECSCHHHHHHHHCSCE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------e-EEEEECCHHHhhhhccccC
Confidence 77889999999999999999999876558999999999999999999988764 4 8888888765321 23689
Q ss_pred cEEEEccCC----------------------------CCchHHHHHhcCCCcEEEEEeCC
Q 028002 145 DAIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~----------------------------~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+|+++.++ ..+++.+.++|||||+|++++++
T Consensus 172 D~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 172 HRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp EEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 999988765 12345677899999999998765
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-15 Score=123.71 Aligned_cols=135 Identities=12% Similarity=0.029 Sum_probs=105.5
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---CCC----
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEF---- 141 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~---- 141 (215)
+.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++..++. .+++++.+|+.+.. ...
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~------~~v~~~~~d~~~~~~~~~~~~~~~ 284 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHI------DNVQIIRMAAEEFTQAMNGVREFN 284 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTC------CSEEEECCCSHHHHHHHSSCCCCT
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC------CceEEEECCHHHHHHHHhhccccc
Confidence 5789999999999999998753 6899999999999999999987664 58999999986532 111
Q ss_pred ---------CCccEEEEccCCCCchHHHHHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeecccCcccc
Q 028002 142 ---------APYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQL 212 (215)
Q Consensus 142 ---------~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 212 (215)
..||+|+++++...+.+.+.+.|+++|.+++..++.......+..... .|.......+.+.|.|++.+.+
T Consensus 285 ~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~~-~y~~~~~~~~D~FP~T~HvE~v 363 (369)
T 3bt7_A 285 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMQCG 363 (369)
T ss_dssp TGGGSCGGGCCEEEEEECCCTTCCCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHH-HEEEEEEEEECCSTTSSCCEEE
T ss_pred cccccccccCCCCEEEECcCccccHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhh-CcEEEEEEeeccCCCCCcEEEE
Confidence 279999999988778888899999999998887764322221111112 4788888888899999998865
Q ss_pred C
Q 028002 213 R 213 (215)
Q Consensus 213 ~ 213 (215)
.
T Consensus 364 ~ 364 (369)
T 3bt7_A 364 V 364 (369)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-14 Score=104.77 Aligned_cols=100 Identities=14% Similarity=0.066 Sum_probs=82.5
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+++.+. ..++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++ . .++.+..+| .
T Consensus 8 ~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~------~~v~~~~~d--~ 69 (170)
T 3i9f_A 8 EYLPNIF--EGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK-----F------DSVITLSDP--K 69 (170)
T ss_dssp TTHHHHH--SSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH-----C------TTSEEESSG--G
T ss_pred HHHHhcC--cCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh-----C------CCcEEEeCC--C
Confidence 3455555 7778899999999999999999875 5999999999999999876 1 578999988 2
Q ss_pred CCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEeC
Q 028002 137 GWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~ 175 (215)
. ...++||+|++...++++ ++++.+.|||||++++...
T Consensus 70 ~-~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 70 E-IPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp G-SCTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-CCCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 2 233789999999988765 4788999999999999753
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.9e-14 Score=106.51 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=83.6
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
...++.+. ..++.+|||+|||+|..+..+++. .+..+|+++|+|+.+++.+.++....... ....++.++++|+.
T Consensus 17 ~~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~-~p~~~v~gvD~s~~~l~~~~~~a~~~~~~--~~~~~v~~~~~d~~ 91 (218)
T 3mq2_A 17 DAEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQ-NPSRLVVALDADKSRMEKISAKAAAKPAK--GGLPNLLYLWATAE 91 (218)
T ss_dssp HHHHHHHH--TTSSEEEEEESCTTCHHHHHHHHH-CTTEEEEEEESCGGGGHHHHHHHTSCGGG--TCCTTEEEEECCST
T ss_pred HHHHHHhh--ccCCCEEEEecCCCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHhhhh--cCCCceEEEecchh
Confidence 44556665 778899999999999999999998 45589999999999888654443321111 12258999999998
Q ss_pred CCCCCCCCccEEEEccCC-----------CCchHHHHHhcCCCcEEEEEeC
Q 028002 136 KGWPEFAPYDAIHVGAAA-----------PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~-----------~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
......+. |.|+..... ..+++++.++|||||.++++++
T Consensus 92 ~l~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 92 RLPPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN 141 (218)
T ss_dssp TCCSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred hCCCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence 75444344 777644321 4566789999999999999754
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=116.81 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=87.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~ 143 (215)
..++.+|||+|||+|..+..++..++..++++++|+++.+++.+++++...+. .++.++.+|+..... ..+.
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~------~~v~~~~~D~~~~~~~~~~~~ 330 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI------KIVKPLVKDARKAPEIIGEEV 330 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCTTCCSSSSCSSC
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEEEcChhhcchhhccCC
Confidence 77889999999999999999999875447999999999999999999987664 579999999876542 2267
Q ss_pred ccEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 144 YDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 144 ~D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
||+|+++.++. .+++.+.++|||||.|++++++.
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99999876541 23566788999999999987653
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-14 Score=114.31 Aligned_cols=98 Identities=19% Similarity=0.233 Sum_probs=79.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++..+++. +. .+|+++|+++ +++.|++++..++.. ++++++.+|+.+...+.++||
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g~-~~v~gvD~s~-~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~~~~~~~D 133 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-GA-KKVLGVDQSE-ILYQAMDIIRLNKLE-----DTITLIKGKIEEVHLPVEKVD 133 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEESST-HHHHHHHHHHHTTCT-----TTEEEEESCTTTSCCSCSCEE
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-CC-CEEEEEChHH-HHHHHHHHHHHcCCC-----CcEEEEEeeHHHhcCCCCcEE
Confidence 567889999999999999999987 43 6899999996 999999998876653 589999999987644447899
Q ss_pred EEEEccC---CC------CchHHHHHhcCCCcEEE
Q 028002 146 AIHVGAA---AP------EIPQALIDQLKPGGRMV 171 (215)
Q Consensus 146 ~V~~~~~---~~------~~~~~~~~~Lk~gG~lv 171 (215)
+|++... +. .++.++.++|||||.++
T Consensus 134 ~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 134 VIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 9998762 21 13456679999999987
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-14 Score=115.02 Aligned_cols=111 Identities=19% Similarity=0.231 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+. ..++.+|||+|||+|.++..+++. ++..+++++|+|+.+++.+++++...+. ...+..+|.
T Consensus 185 ~~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~-------~~~~~~~d~ 254 (343)
T 2pjd_A 185 SQLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARH-SPKIRLTLCDVSAPAVEASRATLAANGV-------EGEVFASNV 254 (343)
T ss_dssp HHHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHH-CTTCBCEEEESBHHHHHHHHHHHHHTTC-------CCEEEECST
T ss_pred HHHHHHhcC--cCCCCeEEEecCccCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHhCC-------CCEEEEccc
Confidence 345555553 345679999999999999999988 4657999999999999999999877553 356788888
Q ss_pred CCCCCCCCCccEEEEccCCCC-----------chHHHHHhcCCCcEEEEEeCCC
Q 028002 135 RKGWPEFAPYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~-----------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.... .++||+|+++.+++. +++++.++|||||.+++..+..
T Consensus 255 ~~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 255 FSEV--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp TTTC--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred cccc--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 7643 378999999998864 3456789999999999987654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.6e-14 Score=109.68 Aligned_cols=104 Identities=19% Similarity=0.196 Sum_probs=81.9
Q ss_pred HHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC
Q 028002 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 138 (215)
Q Consensus 59 l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 138 (215)
+..+..++.++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.+++++.. .+++++++|+.+..
T Consensus 47 ~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~---~~v~gvD~s~~~~~~a~~~~~~---------~~~~~~~~d~~~~~ 114 (245)
T 3ggd_A 47 LPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLDVSKSALEIAAKENTA---------ANISYRLLDGLVPE 114 (245)
T ss_dssp HHHHTTTSCTTSCEEEETCTTSHHHHHHHHHS---SCEEEEESCHHHHHHHHHHSCC---------TTEEEEECCTTCHH
T ss_pred HHHHhhccCCCCeEEEEcCCCCHHHHHHHHhC---CCEEEEECCHHHHHHHHHhCcc---------cCceEEECcccccc
Confidence 34443356788999999999999999999985 4899999999999999887521 58999999987632
Q ss_pred CC-----CCCccEEEEccCCCCch--------HHHHHhcCCCcEEEEEe
Q 028002 139 PE-----FAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 139 ~~-----~~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~ 174 (215)
.. ...||+|++...++++. +++.++|||||++++..
T Consensus 115 ~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 115 QAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp HHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 21 12499999998876544 56889999999977754
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.7e-14 Score=114.18 Aligned_cols=113 Identities=14% Similarity=0.081 Sum_probs=85.5
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+.+.+.. ..++.+|||+|||+|.++..+++. + .+|+++|+|+.+++.+++++..++.. ..+++++++|+.
T Consensus 142 ~~l~~~~~~-~~~~~~VLDlgcGtG~~sl~la~~-g--a~V~~VD~s~~al~~a~~n~~~~gl~----~~~v~~i~~D~~ 213 (332)
T 2igt_A 142 EWLKNAVET-ADRPLKVLNLFGYTGVASLVAAAA-G--AEVTHVDASKKAIGWAKENQVLAGLE----QAPIRWICEDAM 213 (332)
T ss_dssp HHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHT-T--CEEEEECSCHHHHHHHHHHHHHHTCT----TSCEEEECSCHH
T ss_pred HHHHHHHHh-cCCCCcEEEcccccCHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHHcCCC----ccceEEEECcHH
Confidence 344444431 346789999999999999999986 3 48999999999999999999887653 114899999987
Q ss_pred CCCCC----CCCccEEEEccCC----------------CCchHHHHHhcCCCcEEEEEeCC
Q 028002 136 KGWPE----FAPYDAIHVGAAA----------------PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~~~----~~~~D~V~~~~~~----------------~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+.... .++||+|+++++. ..+++.+.++|+|||.+++.+..
T Consensus 214 ~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 214 KFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp HHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred HHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 64321 3689999998763 12445678999999997776543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.8e-14 Score=109.99 Aligned_cols=100 Identities=22% Similarity=0.212 Sum_probs=86.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
..+++.+|||+|||+|.+++.+++. |. .+|+++|+++.+++.+++|+..+++. +++++..+|..+.... +.|
T Consensus 122 ~~~~g~~VlD~~aG~G~~~i~~a~~-g~-~~V~avD~np~a~~~~~~N~~~N~v~-----~~v~~~~~D~~~~~~~-~~~ 193 (278)
T 3k6r_A 122 VAKPDELVVDMFAGIGHLSLPIAVY-GK-AKVIAIEKDPYTFKFLVENIHLNKVE-----DRMSAYNMDNRDFPGE-NIA 193 (278)
T ss_dssp HCCTTCEEEETTCTTTTTTHHHHHH-TC-CEEEEECCCHHHHHHHHHHHHHTTCT-----TTEEEECSCTTTCCCC-SCE
T ss_pred hcCCCCEEEEecCcCcHHHHHHHHh-cC-CeEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEeCcHHHhccc-cCC
Confidence 4788999999999999999999987 43 68999999999999999999998875 6899999999876554 789
Q ss_pred cEEEEccCC--CCchHHHHHhcCCCcEEEE
Q 028002 145 DAIHVGAAA--PEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 145 D~V~~~~~~--~~~~~~~~~~Lk~gG~lv~ 172 (215)
|.|+++.+. ..+++.+.++||+||+|.+
T Consensus 194 D~Vi~~~p~~~~~~l~~a~~~lk~gG~ih~ 223 (278)
T 3k6r_A 194 DRILMGYVVRTHEFIPKALSIAKDGAIIHY 223 (278)
T ss_dssp EEEEECCCSSGGGGHHHHHHHEEEEEEEEE
T ss_pred CEEEECCCCcHHHHHHHHHHHcCCCCEEEE
Confidence 999988654 3567888999999999866
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-14 Score=118.32 Aligned_cols=144 Identities=16% Similarity=0.137 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028002 53 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 53 ~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
.....+...+.. ..++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++..++. . ++++.+
T Consensus 276 ~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~ngl------~-v~~~~~ 344 (425)
T 2jjq_A 276 YQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEINNV------D-AEFEVA 344 (425)
T ss_dssp HHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTC------C-EEEEEC
T ss_pred HHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCC------c-EEEEEC
Confidence 334444454443 5677899999999999999999863 6999999999999999999887653 4 899999
Q ss_pred CCCCCCCCCCCccEEEEccCCCCchH---HHHHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeecccCc
Q 028002 133 DGRKGWPEFAPYDAIHVGAAAPEIPQ---ALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 209 (215)
Q Consensus 133 d~~~~~~~~~~~D~V~~~~~~~~~~~---~~~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 209 (215)
|+.+.... .||+|+++++...+.+ +....|+|+|.++++++.... .+.+.... |.......+.+.|.|++.
T Consensus 345 d~~~~~~~--~fD~Vv~dPPr~g~~~~~~~~l~~l~p~givyvsc~p~tl-arDl~~l~---y~l~~~~~~DmFP~T~Hv 418 (425)
T 2jjq_A 345 SDREVSVK--GFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETF-ARDVKMLD---YRIDEIVALDMFPHTPHV 418 (425)
T ss_dssp CTTTCCCT--TCSEEEECCCTTCSCHHHHHHHHHHCCSEEEEEESCHHHH-HHHHHHSS---CCEEEEEEECCSTTSSCC
T ss_pred ChHHcCcc--CCCEEEEcCCccchHHHHHHHHHhcCCCcEEEEECChHHH-HhHHhhCe---EEEEEEEEECcCCCCceE
Confidence 99876543 8999999988644332 233458999999998754321 11111111 777778888999999998
Q ss_pred cccC
Q 028002 210 AQLR 213 (215)
Q Consensus 210 ~~~~ 213 (215)
+.+.
T Consensus 419 E~v~ 422 (425)
T 2jjq_A 419 ELVA 422 (425)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8664
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.9e-14 Score=110.65 Aligned_cols=106 Identities=12% Similarity=0.138 Sum_probs=77.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhh---cccCc----------cc----------
Q 028002 68 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKS---AAAPL----------LK---------- 123 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~---~~~~~----------~~---------- 123 (215)
++.+|||+|||+|.++..+++.+ .+..+++|+|+|+.+++.|++++... +.... ..
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 56799999999999999999872 12368999999999999999887654 32100 00
Q ss_pred CCCeE-------------EEeCCCCCCCC-----CCCCccEEEEccCCC---------------CchHHHHHhcCCCcEE
Q 028002 124 EGSLS-------------VHVGDGRKGWP-----EFAPYDAIHVGAAAP---------------EIPQALIDQLKPGGRM 170 (215)
Q Consensus 124 ~~~v~-------------~~~~d~~~~~~-----~~~~~D~V~~~~~~~---------------~~~~~~~~~Lk~gG~l 170 (215)
..+++ +.++|+.+... ...+||+|+++.++. .+++.+.++|+|||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 00045 89999877542 324899999986532 3456788999999999
Q ss_pred EEE
Q 028002 171 VIP 173 (215)
Q Consensus 171 v~~ 173 (215)
++.
T Consensus 211 ~~~ 213 (250)
T 1o9g_A 211 AVT 213 (250)
T ss_dssp EEE
T ss_pred EEe
Confidence 994
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=113.46 Aligned_cols=109 Identities=20% Similarity=0.168 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ..++.+|||+|||+|.++..+++. +. .+|+++|+++ +++.+++++...+.. ++++++.+|+.
T Consensus 40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~~vD~s~-~~~~a~~~~~~~~l~-----~~v~~~~~d~~ 109 (348)
T 2y1w_A 40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GA-RKIYAVEAST-MAQHAEVLVKSNNLT-----DRIVVIPGKVE 109 (348)
T ss_dssp HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEECST-HHHHHHHHHHHTTCT-----TTEEEEESCTT
T ss_pred HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CC-CEEEEECCHH-HHHHHHHHHHHcCCC-----CcEEEEEcchh
Confidence 34444443 567899999999999999999886 33 6999999996 889999988876653 58999999988
Q ss_pred CCCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEeC
Q 028002 136 KGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~~ 175 (215)
+.... ++||+|++.....++ +..+.++|||||.+++..+
T Consensus 110 ~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (348)
T 2y1w_A 110 EVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIG 156 (348)
T ss_dssp TCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEE
T ss_pred hCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecC
Confidence 75444 689999998764332 2345789999999986543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-14 Score=120.00 Aligned_cols=106 Identities=25% Similarity=0.252 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~ 144 (215)
..++.+|||+|||+|..+..++..++..++|+++|+++.+++.+++++...+. .++.++.+|...... ..+.|
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~------~nv~v~~~Da~~l~~~~~~~F 176 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV------SNAIVTNHAPAELVPHFSGFF 176 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC------SSEEEECCCHHHHHHHHTTCE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhhhccccC
Confidence 77889999999999999999999876668999999999999999999988775 478999988765321 12689
Q ss_pred cEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 145 DAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|+|+++.++. .+++.+.++|||||.|++++++.
T Consensus 177 D~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 177 DRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp EEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 9999988741 23456788999999999988753
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=102.07 Aligned_cols=98 Identities=22% Similarity=0.232 Sum_probs=79.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+.++.+|||+|||+|..+..+++. + .+++++|+++.+++.+++++ .++.++.+|+.......++||
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~~D~~~~~~~~a~~~~-----------~~~~~~~~d~~~~~~~~~~~D 109 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ-G--HDVLGTDLDPILIDYAKQDF-----------PEARWVVGDLSVDQISETDFD 109 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTTSCCCCCCEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC-C--CcEEEEcCCHHHHHHHHHhC-----------CCCcEEEcccccCCCCCCcee
Confidence 567889999999999999999987 3 68999999999999998764 357889999877544447899
Q ss_pred EEEEcc-CCCC--------chHHHHHhcCCCcEEEEEeCCC
Q 028002 146 AIHVGA-AAPE--------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~-~~~~--------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+|++.. .+++ +++.+.++|+|||.+++..++.
T Consensus 110 ~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 110 LIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred EEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 999983 4433 3457889999999999977653
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-14 Score=107.14 Aligned_cols=106 Identities=29% Similarity=0.312 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+. ..++.+|||+|||+|..+..+++. + .+++++|+++.+++.++++ .++.+..++.
T Consensus 41 ~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~------------~~~~~~~~~~ 103 (227)
T 3e8s_A 41 DQAILLAIL--GRQPERVLDLGCGEGWLLRALADR-G--IEAVGVDGDRTLVDAARAA------------GAGEVHLASY 103 (227)
T ss_dssp HHHHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT-T--CEEEEEESCHHHHHHHHHT------------CSSCEEECCH
T ss_pred cHHHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC-C--CEEEEEcCCHHHHHHHHHh------------cccccchhhH
Confidence 345566665 456689999999999999999887 3 6899999999999999875 2456667665
Q ss_pred CCC---C-CCCCCccEEEEccCCC-----CchHHHHHhcCCCcEEEEEeCCC
Q 028002 135 RKG---W-PEFAPYDAIHVGAAAP-----EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 135 ~~~---~-~~~~~~D~V~~~~~~~-----~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
... . ...++||+|++...++ .+++++.++|+|||++++..++.
T Consensus 104 ~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 104 AQLAEAKVPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp HHHHTTCSCCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HhhcccccccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 543 2 2335699999988775 35578899999999999987653
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=101.17 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+++.+.....++.+|||+|||+|.++..+++. + +++++|+|+.+++. . .+++++++|+
T Consensus 10 ~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~-~---~v~gvD~s~~~~~~------~---------~~~~~~~~d~ 70 (170)
T 3q87_B 10 TYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKR-N---TVVSTDLNIRALES------H---------RGGNLVRADL 70 (170)
T ss_dssp HHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTT-S---EEEEEESCHHHHHT------C---------SSSCEEECST
T ss_pred HHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhc-C---cEEEEECCHHHHhc------c---------cCCeEEECCh
Confidence 44455555422256789999999999999999876 2 89999999999887 1 5789999999
Q ss_pred CCCCCCCCCccEEEEccCCC---------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 135 RKGWPEFAPYDAIHVGAAAP---------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~---------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
...... ++||+|+++.++. .+...+.+.| |||.+++....
T Consensus 71 ~~~~~~-~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 71 LCSINQ-ESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp TTTBCG-GGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred hhhccc-CCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence 875444 7899999998765 2346777778 99999997643
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=108.77 Aligned_cols=97 Identities=20% Similarity=0.173 Sum_probs=77.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|..+..+++. + .+++++|+|+.+++.++++.. .+ +..+|+.......++||
T Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~gvD~s~~~l~~a~~~~~----------~~--~~~~d~~~~~~~~~~fD 116 (260)
T 2avn_A 52 LKNPCRVLDLGGGTGKWSLFLQER-G--FEVVLVDPSKEMLEVAREKGV----------KN--VVEAKAEDLPFPSGAFE 116 (260)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT-T--CEEEEEESCHHHHHHHHHHTC----------SC--EEECCTTSCCSCTTCEE
T ss_pred cCCCCeEEEeCCCcCHHHHHHHHc-C--CeEEEEeCCHHHHHHHHhhcC----------CC--EEECcHHHCCCCCCCEE
Confidence 457889999999999999999887 3 689999999999999987642 12 77888876554447899
Q ss_pred EEEEccCCCC-------chHHHHHhcCCCcEEEEEeCCC
Q 028002 146 AIHVGAAAPE-------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~~~~-------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+|++...+.+ +++++.++|||||.+++.+++.
T Consensus 117 ~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 117 AVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp EEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred EEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 9998765432 3467889999999999987663
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=111.94 Aligned_cols=99 Identities=20% Similarity=0.201 Sum_probs=80.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++..+++. +. .+|+|+|++ .+++.|++++...+.. ++++++.+|+.+...+.++||
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~-~~v~gvD~s-~~l~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~fD 135 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GA-RKVIGIECS-SISDYAVKIVKANKLD-----HVVTIIKGKVEEVELPVEKVD 135 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TC-SEEEEEECS-THHHHHHHHHHHTTCT-----TTEEEEESCTTTCCCSSSCEE
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CC-CEEEEECcH-HHHHHHHHHHHHcCCC-----CcEEEEECcHHHccCCCCceE
Confidence 456789999999999999999987 33 699999999 4999999999887654 569999999987655457999
Q ss_pred EEEEccCCC---------CchHHHHHhcCCCcEEEE
Q 028002 146 AIHVGAAAP---------EIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 146 ~V~~~~~~~---------~~~~~~~~~Lk~gG~lv~ 172 (215)
+|++..... .++..+.++|||||+++.
T Consensus 136 ~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 136 IIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp EEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 999865321 233566799999999974
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-13 Score=108.86 Aligned_cols=99 Identities=21% Similarity=0.217 Sum_probs=79.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++..+++. +. .+|+++|++ .+++.|++++..++.. ++++++.+|+.+...+.++||
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~-~~v~~vD~s-~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~~~~~~~D 107 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GA-KHVIGVDMS-SIIEMAKELVELNGFS-----DKITLLRGKLEDVHLPFPKVD 107 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CC-SEEEEEESS-THHHHHHHHHHHTTCT-----TTEEEEESCTTTSCCSSSCEE
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CC-CEEEEEChH-HHHHHHHHHHHHcCCC-----CCEEEEECchhhccCCCCccc
Confidence 556789999999999999999886 43 689999999 5899999998877654 579999999887644447899
Q ss_pred EEEEccCCC---------CchHHHHHhcCCCcEEEE
Q 028002 146 AIHVGAAAP---------EIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 146 ~V~~~~~~~---------~~~~~~~~~Lk~gG~lv~ 172 (215)
+|++..... .++.++.++|+|||.++.
T Consensus 108 ~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 108 IIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp EEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 999875321 133456789999999973
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=113.25 Aligned_cols=99 Identities=21% Similarity=0.152 Sum_probs=81.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++..+++. +. .+|+++|++ .+++.|++++..++.. ++++++.+|+.+.... ++||
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~-g~-~~V~gvD~s-~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~-~~~D 131 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQA-GA-RKVYAVEAT-KMADHARALVKANNLD-----HIVEVIEGSVEDISLP-EKVD 131 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHT-TC-SEEEEEESS-TTHHHHHHHHHHTTCT-----TTEEEEESCGGGCCCS-SCEE
T ss_pred cCCCCEEEEeccCcCHHHHHHHhc-CC-CEEEEEccH-HHHHHHHHHHHHcCCC-----CeEEEEECchhhcCcC-Ccce
Confidence 567899999999999999999987 43 599999999 9999999999887764 5799999999876555 7899
Q ss_pred EEEEccCCCC---------chHHHHHhcCCCcEEEEE
Q 028002 146 AIHVGAAAPE---------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~---------~~~~~~~~Lk~gG~lv~~ 173 (215)
+|++...... ++..+.++|||||++++.
T Consensus 132 ~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 132 VIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp EEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred EEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 9999653221 345667999999999774
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-12 Score=106.36 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC--CCCc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~ 144 (215)
.++.+|||+| |+|.++..+++. ++..+++++|+++.+++.|++++...+. .+++++.+|+...++. .++|
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~------~~v~~~~~D~~~~l~~~~~~~f 242 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGY------EDIEIFTFDLRKPLPDYALHKF 242 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTC------CCEEEECCCTTSCCCTTTSSCB
T ss_pred CCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEEChhhhhchhhccCCc
Confidence 3578999999 999999999887 5657999999999999999999987664 3799999999874332 3589
Q ss_pred cEEEEccCCC-----CchHHHHHhcCCCc-EEEEEeCC
Q 028002 145 DAIHVGAAAP-----EIPQALIDQLKPGG-RMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~-----~~~~~~~~~Lk~gG-~lv~~~~~ 176 (215)
|+|+++.++. .+++.+.+.|+||| .+++++..
T Consensus 243 D~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 243 DTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp SEEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred cEEEECCCCchHHHHHHHHHHHHHcccCCeEEEEEEec
Confidence 9999998764 34578899999999 44666654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-14 Score=111.80 Aligned_cols=105 Identities=22% Similarity=0.142 Sum_probs=76.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCccc----------------------
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK---------------------- 123 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~---------------------- 123 (215)
..++.+|||+|||+|.++..++.. +. .+|+|+|+|+.+++.|++++...... +.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~-~~-~~v~g~D~s~~~l~~a~~~~~~~~~~--~d~s~~~~~~~~~~~~~~~~~~~~ 128 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACD-SF-QDITLSDFTDRNREELEKWLKKEPGA--YDWTPAVKFACELEGNSGRWEEKE 128 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGG-TE-EEEEEEESCHHHHHHHHHHHHTCTTC--CCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHh-hh-cceeeccccHHHHHHHHHHHhcCCCc--ccchHHHHHHHhcCCCCcchhhHH
Confidence 456789999999999887766654 32 47999999999999999876542100 00
Q ss_pred ---CCCeE-EEeCCCCCCCC----CCCCccEEEEccCCCCc----------hHHHHHhcCCCcEEEEEe
Q 028002 124 ---EGSLS-VHVGDGRKGWP----EFAPYDAIHVGAAAPEI----------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 124 ---~~~v~-~~~~d~~~~~~----~~~~~D~V~~~~~~~~~----------~~~~~~~Lk~gG~lv~~~ 174 (215)
..++. +.++|+....+ ..++||+|++...++++ ++++.++|||||.|+++.
T Consensus 129 ~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 129 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 01343 88899876422 23689999999876543 356789999999999985
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9e-14 Score=107.06 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecC-hHHHHHH---HHHHHhhcccCcccCCCeEEEeCCCCCCCCC-
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHI-PELVVSS---IQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE- 140 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s-~~~~~~a---~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~- 140 (215)
..++.+|||+|||+|..+..+++. .+..+|+|+|+| +.+++.| ++++...+. .++.+..+|+......
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~------~~v~~~~~d~~~l~~~~ 94 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSKGGL------SNVVFVIAAAESLPFEL 94 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHT-CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC------SSEEEECCBTTBCCGGG
T ss_pred CCCCCEEEEEeccCcHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC------CCeEEEEcCHHHhhhhc
Confidence 567889999999999999999876 355899999999 6676666 655544433 5799999998775321
Q ss_pred CCCccEEEEccCCC-----------CchHHHHHhcCCCcEEEEE
Q 028002 141 FAPYDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~-----------~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+.+|.|+++.+.. .++.++.++|||||.+++.
T Consensus 95 ~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 95 KNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp TTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred cCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence 14566666654332 2457889999999999993
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=106.79 Aligned_cols=81 Identities=14% Similarity=0.046 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC----CCC--C
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----WPE--F 141 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~----~~~--~ 141 (215)
++.+|||+|||+|.++..+++.. +..+++++|+++.+++.|++++...+.. .+++++++|+.+. ... .
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~ 138 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLS-----DLIKVVKVPQKTLLMDALKEESE 138 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEECCTTCSSTTTSTTCCS
T ss_pred CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCC-----ccEEEEEcchhhhhhhhhhcccC
Confidence 56799999999999999998875 3379999999999999999999876653 4699999997542 221 2
Q ss_pred CCccEEEEccCCC
Q 028002 142 APYDAIHVGAAAP 154 (215)
Q Consensus 142 ~~~D~V~~~~~~~ 154 (215)
++||+|++++++.
T Consensus 139 ~~fD~i~~npp~~ 151 (254)
T 2h00_A 139 IIYDFCMCNPPFF 151 (254)
T ss_dssp CCBSEEEECCCCC
T ss_pred CcccEEEECCCCc
Confidence 5899999996653
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=110.88 Aligned_cols=98 Identities=23% Similarity=0.225 Sum_probs=77.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.+++.+++. |. .+|+++|.|+ +++.|++.+..++.. ++++++.++..+...+ ++||
T Consensus 81 ~~~~k~VLDvG~GtGiLs~~Aa~a-GA-~~V~ave~s~-~~~~a~~~~~~n~~~-----~~i~~i~~~~~~~~lp-e~~D 151 (376)
T 4hc4_A 81 ALRGKTVLDVGAGTGILSIFCAQA-GA-RRVYAVEASA-IWQQAREVVRFNGLE-----DRVHVLPGPVETVELP-EQVD 151 (376)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEECST-THHHHHHHHHHTTCT-----TTEEEEESCTTTCCCS-SCEE
T ss_pred hcCCCEEEEeCCCccHHHHHHHHh-CC-CEEEEEeChH-HHHHHHHHHHHcCCC-----ceEEEEeeeeeeecCC-cccc
Confidence 346889999999999999988877 54 6899999986 789999999888875 7899999999876554 7899
Q ss_pred EEEEccCC-----CC----chHHHHHhcCCCcEEEE
Q 028002 146 AIHVGAAA-----PE----IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 146 ~V~~~~~~-----~~----~~~~~~~~Lk~gG~lv~ 172 (215)
+|++.... +. +.....++|+|||.++-
T Consensus 152 vivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 152 AIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp EEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred EEEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 99874321 22 23455689999998864
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-12 Score=106.99 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=83.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...+.. ++++++.+|+....+ ..||
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~-----~~v~~~~~d~~~~~p--~~~D 270 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLA-----DRCEILPGDFFETIP--DGAD 270 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCT-----TTEEEEECCTTTCCC--SSCS
T ss_pred CccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcC-----CceEEeccCCCCCCC--CCce
Confidence 4567899999999999999999985 6679999999 99999999998876543 689999999985443 3799
Q ss_pred EEEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028002 146 AIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
+|++...++++ ++++.+.|+|||+|++..
T Consensus 271 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e 307 (369)
T 3gwz_A 271 VYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVID 307 (369)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred EEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 99999887643 456789999999999853
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-12 Score=106.82 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCCc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~ 144 (215)
....+|||+|||+|..+..+++.. |..+++++|+ +.+++.+++++...+.. ++++++.+|+.+.. .+ ++|
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~p-~~~ 249 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGS-----ERIHGHGANLLDRDVPFP-TGF 249 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTG-----GGEEEEECCCCSSSCCCC-CCC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcc-----cceEEEEccccccCCCCC-CCc
Confidence 456899999999999999999985 6689999999 99999999988765543 58999999998752 23 689
Q ss_pred cEEEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028002 145 DAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 145 D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
|+|++...++++ ++++.+.|+|||+|++..
T Consensus 250 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 250 DAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp SEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999999888754 356789999999998854
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-13 Score=112.91 Aligned_cols=112 Identities=25% Similarity=0.371 Sum_probs=88.2
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+...+. ..++.+|||+|||+|..+..+++.+ ++++++++|+++.+++.+++++...+. ++.++.+|..
T Consensus 236 ~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~~~~~l~~~~~~~~~~g~-------~~~~~~~D~~ 305 (429)
T 1sqg_A 236 QGCMTWLA--PQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGM-------KATVKQGDGR 305 (429)
T ss_dssp HTHHHHHC--CCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTC-------CCEEEECCTT
T ss_pred HHHHHHcC--CCCcCeEEEECCCchHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHHcCC-------CeEEEeCchh
Confidence 34444454 7788999999999999999999985 447999999999999999999887653 4688899987
Q ss_pred CCC--CCCCCccEEEEccCCC----------------------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 136 KGW--PEFAPYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 136 ~~~--~~~~~~D~V~~~~~~~----------------------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
... ...+.||+|+++.++. .+++.+.++|||||+|++++++.
T Consensus 306 ~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred hchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 653 2236899999877642 23456778999999999987653
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=112.84 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=80.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~ 144 (215)
.+++.+|||+|||+|..+..+++. | .+|+++|+|+.+++.+++++..++.. ..+.++|+.+.+.. .+.|
T Consensus 212 ~~~g~~VLDlg~GtG~~sl~~a~~-g--a~V~avDis~~al~~a~~n~~~ng~~-------~~~~~~D~~~~l~~~~~~f 281 (393)
T 4dmg_A 212 VRPGERVLDVYSYVGGFALRAARK-G--AYALAVDKDLEALGVLDQAALRLGLR-------VDIRHGEALPTLRGLEGPF 281 (393)
T ss_dssp CCTTCEEEEESCTTTHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHHTCC-------CEEEESCHHHHHHTCCCCE
T ss_pred hcCCCeEEEcccchhHHHHHHHHc-C--CeEEEEECCHHHHHHHHHHHHHhCCC-------CcEEEccHHHHHHHhcCCC
Confidence 556899999999999999999986 4 45999999999999999999887652 24668887653211 2349
Q ss_pred cEEEEccCC---------------CCchHHHHHhcCCCcEEEEEeCCC
Q 028002 145 DAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~---------------~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|+|+++++. ..+...+.++|+|||.|++.+++.
T Consensus 282 D~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 282 HHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp EEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 999999875 234566789999999999766553
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=105.96 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=87.8
Q ss_pred HHHHHHHHhcC--CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 56 ATCLQLLEENL--KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 56 ~~~l~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
..+++.+. . .++.+|||+|||+|..+..+++.. +..+++++|++ .+++.+++++...+.. ++++++.+|
T Consensus 153 ~~~~~~~~--~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~-----~~v~~~~~d 223 (335)
T 2r3s_A 153 QLIAQLVN--ENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVA-----SRYHTIAGS 223 (335)
T ss_dssp HHHHHHHT--C--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCG-----GGEEEEESC
T ss_pred HHHHHhcc--cccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCC-----cceEEEecc
Confidence 34455554 4 677899999999999999999985 55799999999 9999999998776543 479999999
Q ss_pred CCCCCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEeC
Q 028002 134 GRKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~~ 175 (215)
+.+.... +.||+|++...++++ ++++.+.|+|||++++...
T Consensus 224 ~~~~~~~-~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 224 AFEVDYG-NDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF 272 (335)
T ss_dssp TTTSCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccCCCC-CCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence 8764333 459999998877654 3567899999999888643
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=109.57 Aligned_cols=107 Identities=21% Similarity=0.185 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCCCc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~ 144 (215)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...... ....+++++.+|+..... ..++|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~--~~~~~v~~~~~D~~~~~~~~~~~~f 170 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRS--LADPRATVRVGDGLAFVRQTPDNTY 170 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGG--GGCTTEEEEESCHHHHHHSSCTTCE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcc--cCCCcEEEEECcHHHHHHhccCCce
Confidence 456899999999999999999763 4479999999999999999987432111 223689999999875432 23789
Q ss_pred cEEEEccCCC----------CchHHHHHhcCCCcEEEEEeCC
Q 028002 145 DAIHVGAAAP----------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+|+++...+ .+++.+.++|+|||++++...+
T Consensus 171 DvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 171 DVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp EEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred eEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 9999977542 3456889999999999997665
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.1e-13 Score=109.45 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=87.7
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE
Q 028002 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 129 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~ 129 (215)
..+.+...++... ..++.+|||+|||+|.++..++... ..++++|+|+|+.+++.|++++...+.. +++++
T Consensus 202 l~~~la~~l~~~~---~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl~-----~~i~~ 272 (373)
T 3tm4_A 202 LKASIANAMIELA---ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGVL-----DKIKF 272 (373)
T ss_dssp CCHHHHHHHHHHH---TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTCG-----GGCEE
T ss_pred ccHHHHHHHHHhh---cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCC-----CceEE
Confidence 3444455555443 5678899999999999999999874 4458999999999999999999887654 58899
Q ss_pred EeCCCCCCCCCCCCccEEEEccCCCC--------------chHHHHHhcCCCcEEEEEeCC
Q 028002 130 HVGDGRKGWPEFAPYDAIHVGAAAPE--------------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 130 ~~~d~~~~~~~~~~~D~V~~~~~~~~--------------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.++|+.+.....++||+|++++++.. +.+.+.++| +|.+++.+++
T Consensus 273 ~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~ 331 (373)
T 3tm4_A 273 IQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE 331 (373)
T ss_dssp EECCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC
T ss_pred EECChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC
Confidence 99999876554478999999987531 224566667 5666655554
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.3e-13 Score=100.50 Aligned_cols=102 Identities=18% Similarity=0.106 Sum_probs=76.5
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
.+.+.+. .+.++.+|||+|||+|..+..+++.+++ ..+|+++|+++.. . ..++.++++|+.
T Consensus 12 ~~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~------~~~v~~~~~d~~ 73 (201)
T 2plw_A 12 ELDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P------IPNVYFIQGEIG 73 (201)
T ss_dssp HHHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C------CTTCEEEECCTT
T ss_pred HHHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C------CCCceEEEcccc
Confidence 3444443 3577889999999999999999998642 4799999999831 0 147889999987
Q ss_pred CCC-------------------------CCCCCccEEEEccCCCC-----------------chHHHHHhcCCCcEEEEE
Q 028002 136 KGW-------------------------PEFAPYDAIHVGAAAPE-----------------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 136 ~~~-------------------------~~~~~~D~V~~~~~~~~-----------------~~~~~~~~Lk~gG~lv~~ 173 (215)
... ...++||+|+++...+. +++.+.++|||||.+++.
T Consensus 74 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 153 (201)
T 2plw_A 74 KDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK 153 (201)
T ss_dssp TTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 654 23368999999876543 345678999999999996
Q ss_pred eCC
Q 028002 174 VGN 176 (215)
Q Consensus 174 ~~~ 176 (215)
+..
T Consensus 154 ~~~ 156 (201)
T 2plw_A 154 MYL 156 (201)
T ss_dssp EEC
T ss_pred EeC
Confidence 543
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=115.43 Aligned_cols=148 Identities=19% Similarity=0.211 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
+...+++.+. ..++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.|++++..++. .+++++.+|
T Consensus 274 l~~~~~~~l~--~~~~~~VLDlgcG~G~~~~~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~------~~v~f~~~d 342 (433)
T 1uwv_A 274 MVARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGL------QNVTFYHEN 342 (433)
T ss_dssp HHHHHHHHHT--CCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECC
T ss_pred HHHHHHHhhc--CCCCCEEEECCCCCCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEECC
Confidence 3444455544 5677899999999999999999873 7999999999999999999987654 489999999
Q ss_pred CCCCCC----CCCCccEEEEccCCCCchHHH--HHhcCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeeccc
Q 028002 134 GRKGWP----EFAPYDAIHVGAAAPEIPQAL--IDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTS 207 (215)
Q Consensus 134 ~~~~~~----~~~~~D~V~~~~~~~~~~~~~--~~~Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 207 (215)
+.+... ..++||+|+++++.....+.+ ...++|++.++++++.... ........+..|.......+.+.|.|+
T Consensus 343 ~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~l~~~~p~~ivyvsc~p~tl-ard~~~l~~~Gy~~~~~~~~d~Fp~t~ 421 (433)
T 1uwv_A 343 LEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATL-ARDSEALLKAGYTIARLAMLDMFPHTG 421 (433)
T ss_dssp TTSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHHHCCSEEEEEESCHHHH-HHHHHHHHHTTCEEEEEEEECCSTTSS
T ss_pred HHHHhhhhhhhcCCCCEEEECCCCccHHHHHHHHHhcCCCeEEEEECChHHH-HhhHHHHHHCCcEEEEEEEeccCCCCC
Confidence 987432 235799999998876544322 2236899988887654321 111112223567777778888999999
Q ss_pred CccccC
Q 028002 208 RDAQLR 213 (215)
Q Consensus 208 ~~~~~~ 213 (215)
+.+.+.
T Consensus 422 HvE~v~ 427 (433)
T 1uwv_A 422 HLESMV 427 (433)
T ss_dssp CCEEEE
T ss_pred eEEEEE
Confidence 887653
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-13 Score=107.94 Aligned_cols=108 Identities=20% Similarity=0.149 Sum_probs=79.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccC-----------ccc-----------
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP-----------LLK----------- 123 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~-----------~~~----------- 123 (215)
..++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.+++++....... ..+
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACE-SF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGG-TE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhc-cc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 356689999999999999888876 33 589999999999999998875421000 000
Q ss_pred -CCCe-EEEeCCCCCCCC-CC---CCccEEEEccCCC----C------chHHHHHhcCCCcEEEEEeC
Q 028002 124 -EGSL-SVHVGDGRKGWP-EF---APYDAIHVGAAAP----E------IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 124 -~~~v-~~~~~d~~~~~~-~~---~~~D~V~~~~~~~----~------~~~~~~~~Lk~gG~lv~~~~ 175 (215)
..++ .+..+|+....+ .. ++||+|++...++ + +++++.++|||||+|++...
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 0127 899999876533 33 6899999988776 3 33568899999999999763
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=108.67 Aligned_cols=107 Identities=22% Similarity=0.240 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
..+.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...... +..++++++.+|+..... ..++||
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~--~~~~rv~v~~~D~~~~l~~~~~~fD 150 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGK--LDDPRVDVQVDDGFMHIAKSENQYD 150 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTT--TTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccc--cCCCceEEEECcHHHHHhhCCCCee
Confidence 346899999999999999998763 3479999999999999999987543110 223689999999875322 236899
Q ss_pred EEEEccCCC----------CchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAP----------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+++...+ .+.+.+.+.|+|||++++...+
T Consensus 151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 999987542 4567899999999999998654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-13 Score=100.52 Aligned_cols=103 Identities=22% Similarity=0.295 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. +..++.+|||+|||+|..+..+++.+++..+++++|+++ +++. .++.+..+|..
T Consensus 11 ~~~~~~~~-~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------------~~~~~~~~d~~ 72 (180)
T 1ej0_A 11 DEIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------------VGVDFLQGDFR 72 (180)
T ss_dssp HHHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------------TTEEEEESCTT
T ss_pred HHHHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------------CcEEEEEcccc
Confidence 34444443 357788999999999999999999876668999999998 6421 47889999987
Q ss_pred CCC--------CCCCCccEEEEccCCC-----------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 136 KGW--------PEFAPYDAIHVGAAAP-----------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~--------~~~~~~D~V~~~~~~~-----------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
... ...++||+|+++.+++ .+++.+.++|+|||.+++....
T Consensus 73 ~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 73 DELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp SHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred cchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 652 2336899999987764 3456788999999999997654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-12 Score=102.47 Aligned_cols=100 Identities=22% Similarity=0.216 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCc---cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC-------
Q 028002 68 PGMHALDIGSGT---GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG------- 137 (215)
Q Consensus 68 ~~~~vLdiG~G~---G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~------- 137 (215)
+..+|||+|||+ |..+..+.+. .+..+|+++|+|+.+++.+++++... .++.++.+|+.+.
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~~--------~~v~~~~~D~~~~~~~~~~~ 147 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAKD--------PNTAVFTADVRDPEYILNHP 147 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTTC--------TTEEEEECCTTCHHHHHHSH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCCC--------CCeEEEEeeCCCchhhhccc
Confidence 347999999999 9887766665 46689999999999999999887431 5799999998652
Q ss_pred ----CCCCCCccEEEEccCCCCch--------HHHHHhcCCCcEEEEEeCC
Q 028002 138 ----WPEFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 138 ----~~~~~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~~~ 176 (215)
..+.++||+|++...++++. +++.+.|+|||+|++....
T Consensus 148 ~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 148 DVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp HHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred hhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 12225799999998776543 5788999999999997644
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=110.56 Aligned_cols=105 Identities=20% Similarity=0.186 Sum_probs=73.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHh---CCCCe--EEEEecChHHHHHHHHHHHhhcccCcccCCCeEE--EeCCCCCCC-
Q 028002 67 KPGMHALDIGSGTGYLTACFALMV---GPQGR--AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV--HVGDGRKGW- 138 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~--v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~--~~~d~~~~~- 138 (215)
.++.+|||+|||+|.++..+++.+ .+... ++++|+|+.|++.+++++..... ..++.+ ..++.....
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~-----~~~v~~~~~~~~~~~~~~ 125 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN-----LENVKFAWHKETSSEYQS 125 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS-----CTTEEEEEECSCHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC-----CCcceEEEEecchhhhhh
Confidence 456799999999998776543322 23353 49999999999999988764211 134444 455443221
Q ss_pred -----CCCCCccEEEEccCCCCch------HHHHHhcCCCcEEEEEeCC
Q 028002 139 -----PEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 139 -----~~~~~~D~V~~~~~~~~~~------~~~~~~Lk~gG~lv~~~~~ 176 (215)
...++||+|++...++++. .++.++|||||++++...+
T Consensus 126 ~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 126 RMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp HHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 1237899999999887654 6789999999999987543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-13 Score=111.47 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCC-CeEEEeCCCCCCCC----CC
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG-SLSVHVGDGRKGWP----EF 141 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~----~~ 141 (215)
.++.+|||+|||+|.++..+++. +. .+|+++|+|+.+++.|++++..++.. . +++++.+|+.+... ..
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~-ga-~~V~~vD~s~~al~~A~~N~~~n~~~-----~~~v~~~~~D~~~~l~~~~~~~ 283 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMG-GA-MATTSVDLAKRSRALSLAHFEANHLD-----MANHQLVVMDVFDYFKYARRHH 283 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT-TB-SEEEEEESCTTHHHHHHHHHHHTTCC-----CTTEEEEESCHHHHHHHHHHTT
T ss_pred cCCCeEEEEeeccCHHHHHHHHC-CC-CEEEEEECCHHHHHHHHHHHHHcCCC-----ccceEEEECCHHHHHHHHHHhC
Confidence 56789999999999999999985 32 58999999999999999999887652 3 79999999865332 12
Q ss_pred CCccEEEEccCCC-----C----------chHHHHHhcCCCcEEEEEeCCCc
Q 028002 142 APYDAIHVGAAAP-----E----------IPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 142 ~~~D~V~~~~~~~-----~----------~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
.+||+|+++++.. . +...+.++|+|||.|+++++...
T Consensus 284 ~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~ 335 (385)
T 2b78_A 284 LTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335 (385)
T ss_dssp CCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 5899999987662 1 22345789999999999887643
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=108.09 Aligned_cols=101 Identities=25% Similarity=0.324 Sum_probs=83.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...+.. ++++++.+|+.+..+ ..||
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~--~~~D 250 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLA-----DRVTVAEGDFFKPLP--VTAD 250 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCT-----TTEEEEECCTTSCCS--CCEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCC-----CceEEEeCCCCCcCC--CCCC
Confidence 4567899999999999999999985 5579999999 99999999998776543 489999999876443 3499
Q ss_pred EEEEccCCCCc--------hHHHHHhcCCCcEEEEEeC
Q 028002 146 AIHVGAAAPEI--------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 146 ~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~~ 175 (215)
+|++...++++ ++++.+.|+|||++++...
T Consensus 251 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 251 VVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 99999887643 4568899999999988654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.3e-13 Score=105.51 Aligned_cols=115 Identities=22% Similarity=0.276 Sum_probs=88.2
Q ss_pred Ccc-cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028002 46 NAT-ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 46 ~~~-~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
|++ +..+.+...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+|+.+++.+++++...+..
T Consensus 7 gq~fl~d~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~----- 76 (285)
T 1zq9_A 7 GQHILKNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVA----- 76 (285)
T ss_dssp -CCEECCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTG-----
T ss_pred CcCccCCHHHHHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCC-----
Confidence 444 357777888888876 6788999999999999999999884 68999999999999999987654321
Q ss_pred CCeEEEeCCCCCCCCCCCCccEEEEccCCCCch---------------------HHH--HHhcCCCcEEEE
Q 028002 125 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIP---------------------QAL--IDQLKPGGRMVI 172 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~---------------------~~~--~~~Lk~gG~lv~ 172 (215)
.+++++.+|+..... ..||+|+++.++.... +++ +.+++|||.++.
T Consensus 77 ~~v~~~~~D~~~~~~--~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~ 145 (285)
T 1zq9_A 77 SKLQVLVGDVLKTDL--PFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYC 145 (285)
T ss_dssp GGEEEEESCTTTSCC--CCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCS
T ss_pred CceEEEEcceecccc--hhhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccc
Confidence 479999999976533 3799999986553211 222 358999998754
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=106.10 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=82.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+ .+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...+.. ++++++.+|+.+..+ +.||
T Consensus 166 ~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~--~~~D 235 (334)
T 2ip2_A 166 FRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAG-----ERVSLVGGDMLQEVP--SNGD 235 (334)
T ss_dssp CTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHT-----TSEEEEESCTTTCCC--SSCS
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCC-----CcEEEecCCCCCCCC--CCCC
Confidence 344 899999999999999999985 5579999999 99999999988765543 589999999877433 6799
Q ss_pred EEEEccCCCC--------chHHHHHhcCCCcEEEEEe
Q 028002 146 AIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|++...+++ +++++.+.|+|||++++..
T Consensus 236 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 236 IYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999988864 3456889999999999864
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-13 Score=110.61 Aligned_cols=107 Identities=21% Similarity=0.190 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCCCc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~ 144 (215)
.++.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.|++++..... .+...+++++.+|+..... ..++|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~--gl~~~rv~~~~~D~~~~l~~~~~~~f 195 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAI--GYEDPRVNLVIGDGVAFLKNAAEGSY 195 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG--GGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhcc--ccCCCcEEEEECCHHHHHHhccCCCc
Confidence 456899999999999999999873 447999999999999999998765310 0122689999999765321 23689
Q ss_pred cEEEEccCC----------CCchHHHHHhcCCCcEEEEEeCC
Q 028002 145 DAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~----------~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+|+++... ..+++.+.++|+|||+|++...+
T Consensus 196 DlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 237 (334)
T 1xj5_A 196 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 237 (334)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 999997652 23557889999999999997544
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=105.03 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=82.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...+.. +++++..+|+....+ ..||+|
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~p--~~~D~v 239 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLS-----GRAQVVVGSFFDPLP--AGAGGY 239 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCT-----TTEEEEECCTTSCCC--CSCSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcC-----cCeEEecCCCCCCCC--CCCcEE
Confidence 45799999999999999999985 6679999999 99999999998876543 689999999975443 379999
Q ss_pred EEccCCCCch--------HHHHHhcCCCcEEEEEeC
Q 028002 148 HVGAAAPEIP--------QALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 148 ~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~~ 175 (215)
++...++++. +++.+.|+|||+|++...
T Consensus 240 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 240 VLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred EEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 9998886544 467899999999998654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.2e-13 Score=107.77 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=82.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCCccE
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPYDA 146 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D~ 146 (215)
+.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...+.. ++++++.+|+.+.. .. +.||+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~-~~~D~ 251 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLG-----GRVEFFEKNLLDARNFEG-GAADV 251 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCG-----GGEEEEECCTTCGGGGTT-CCEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCC-----CceEEEeCCcccCcccCC-CCccE
Confidence 7899999999999999999985 5689999999 88999999988776543 57999999988754 33 57999
Q ss_pred EEEccCCCCch--------HHHHHhcCCCcEEEEEe
Q 028002 147 IHVGAAAPEIP--------QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 147 V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~ 174 (215)
|++...++++. +++.+.|+|||+|++..
T Consensus 252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 252 VMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 99998886543 46789999999999853
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-13 Score=107.36 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
..+.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++...... ...++++++.+|+..... ..++||
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~--~~~~~v~~~~~D~~~~l~~~~~~fD 165 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCG--FDDPRAEIVIANGAEYVRKFKNEFD 165 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGG--GGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccc--cCCCceEEEECcHHHHHhhCCCCce
Confidence 345899999999999999999874 4479999999999999999987542110 123689999999765322 236899
Q ss_pred EEEEccCCC-----------CchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~-----------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+++...+ .+++.+.+.|+|||++++.+.+
T Consensus 166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 999876433 3457889999999999998655
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-12 Score=104.60 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=86.1
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...+.. ++++++.+|+.
T Consensus 180 ~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~ 250 (359)
T 1x19_A 180 QLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVA-----DRMRGIAVDIY 250 (359)
T ss_dssp HHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCT-----TTEEEEECCTT
T ss_pred HHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCC-----CCEEEEeCccc
Confidence 34444443 5667899999999999999999985 5579999999 99999999998876543 46999999998
Q ss_pred CCCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028002 136 KGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
+.... .+|+|++...++++ ++++.+.|+|||++++..
T Consensus 251 ~~~~~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 251 KESYP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp TSCCC--CCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred cCCCC--CCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 75333 34999999887654 356789999999997754
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-13 Score=106.97 Aligned_cols=117 Identities=17% Similarity=0.128 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc----------Cccc-
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA----------PLLK- 123 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~----------~~~~- 123 (215)
...+.+.+.....++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|++++...... ..+.
T Consensus 58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (289)
T 2g72_A 58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 135 (289)
T ss_dssp HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccC--CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcC
Confidence 445555554223467899999999999544333322 269999999999999998865421000 0000
Q ss_pred -------------CCCeEEEeCCCCCCCC------CCCCccEEEEccCCCC----c------hHHHHHhcCCCcEEEEE
Q 028002 124 -------------EGSLSVHVGDGRKGWP------EFAPYDAIHVGAAAPE----I------PQALIDQLKPGGRMVIP 173 (215)
Q Consensus 124 -------------~~~v~~~~~d~~~~~~------~~~~~D~V~~~~~~~~----~------~~~~~~~Lk~gG~lv~~ 173 (215)
...+.++.+|+....+ ..++||+|++...+++ + ++++.++|||||+|++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 136 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 0125677778876221 1256999999988765 2 35688999999999996
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-13 Score=114.29 Aligned_cols=100 Identities=19% Similarity=0.142 Sum_probs=79.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++..+++. + ..+|+++|+++ +++.|++++...+.. ++++++.+|+.+.... ++||
T Consensus 156 ~~~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~s~-~l~~A~~~~~~~gl~-----~~v~~~~~d~~~~~~~-~~fD 226 (480)
T 3b3j_A 156 DFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLT-----DRIVVIPGKVEEVSLP-EQVD 226 (480)
T ss_dssp GTTTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEECHH-HHHHHHHHHHHTTCT-----TTEEEEESCTTTCCCS-SCEE
T ss_pred hcCCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEcHH-HHHHHHHHHHHcCCC-----CcEEEEECchhhCccC-CCeE
Confidence 456789999999999999998875 3 36999999998 999999998887654 5899999999874333 6899
Q ss_pred EEEEccCCCC--------chHHHHHhcCCCcEEEEEe
Q 028002 146 AIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+++....+ .+..+.++|||||.+++..
T Consensus 227 ~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 227 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp EEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred EEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9999765322 2234578999999998643
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-13 Score=112.23 Aligned_cols=105 Identities=19% Similarity=0.294 Sum_probs=85.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----CC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~ 141 (215)
..++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.|++++..++.. .+++++.+|+.+... ..
T Consensus 215 ~~~~~~VLDl~~G~G~~~~~la~~-g~-~~v~~vD~s~~~l~~a~~n~~~n~~~-----~~v~~~~~d~~~~~~~~~~~~ 287 (396)
T 2as0_A 215 VQPGDRVLDVFTYTGGFAIHAAIA-GA-DEVIGIDKSPRAIETAKENAKLNGVE-----DRMKFIVGSAFEEMEKLQKKG 287 (396)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHHHHTTCG-----GGEEEEESCHHHHHHHHHHTT
T ss_pred hhCCCeEEEecCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHcCCC-----ccceEEECCHHHHHHHHHhhC
Confidence 347899999999999999999986 32 68999999999999999999887653 379999999865432 13
Q ss_pred CCccEEEEccCCC---------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 142 APYDAIHVGAAAP---------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 142 ~~~D~V~~~~~~~---------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
++||+|+++++.- .+...+.++|+|||.+++++++.
T Consensus 288 ~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 288 EKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 6899999987652 23456789999999999987764
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-12 Score=103.07 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=81.2
Q ss_pred CCc-ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCccc
Q 028002 45 YNA-TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 123 (215)
Q Consensus 45 ~~~-~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~ 123 (215)
+|+ ++..+.+...+++.+. ..++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.+++++...
T Consensus 28 ~GQnfL~d~~i~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~~~------- 95 (295)
T 3gru_A 28 LGQCFLIDKNFVNKAVESAN--LTKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKELY------- 95 (295)
T ss_dssp --CCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHHHC-------
T ss_pred cCccccCCHHHHHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhccC-------
Confidence 355 5677888899999886 7788999999999999999999984 79999999999999999988631
Q ss_pred CCCeEEEeCCCCCCCCCCCCccEEEEccCCCC
Q 028002 124 EGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE 155 (215)
Q Consensus 124 ~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~ 155 (215)
.+++++.+|+.........||.|+++.++.-
T Consensus 96 -~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~i 126 (295)
T 3gru_A 96 -NNIEIIWGDALKVDLNKLDFNKVVANLPYQI 126 (295)
T ss_dssp -SSEEEEESCTTTSCGGGSCCSEEEEECCGGG
T ss_pred -CCeEEEECchhhCCcccCCccEEEEeCcccc
Confidence 5899999999875444357999999977643
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-12 Score=105.76 Aligned_cols=102 Identities=25% Similarity=0.317 Sum_probs=83.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...+.. .+++++.+|+.+..+ ..||
T Consensus 181 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~--~~~D 251 (360)
T 1tw3_A 181 WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLS-----DRVDVVEGDFFEPLP--RKAD 251 (360)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCT-----TTEEEEECCTTSCCS--SCEE
T ss_pred CccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCC-----CceEEEeCCCCCCCC--CCcc
Confidence 4567899999999999999999984 6679999999 99999999998876543 489999999876444 3499
Q ss_pred EEEEccCCCC--------chHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAPE--------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++...+++ +++++.+.|+|||++++....
T Consensus 252 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 252 AIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 9999888754 345688999999999986443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-13 Score=113.31 Aligned_cols=101 Identities=23% Similarity=0.212 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----CCCC
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EFAP 143 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~ 143 (215)
++.+|||+|||+|..+..+++.. .+|+++|+++.+++.|++++..++. .+++++.+|+.+... ...+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~~------~~~~~~~~d~~~~~~~~~~~~~~ 279 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDLLRRLEKEGER 279 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHHHHHHHHTTCC
T ss_pred CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC------CCceEEECCHHHHHHHHHhcCCC
Confidence 77899999999999999999873 7999999999999999999988765 358999999876432 1368
Q ss_pred ccEEEEccCCC---------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 144 YDAIHVGAAAP---------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 144 ~D~V~~~~~~~---------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
||+|+++++.- .++..+.++|+|||.|+++++..
T Consensus 280 fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 280 FDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp EEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred eeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99999987651 24456889999999999987764
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=105.81 Aligned_cols=103 Identities=18% Similarity=0.185 Sum_probs=83.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCC----CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQ----GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~----~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (215)
..++.+|||+|||+|.++..+++.+... .+++|+|+++.+++.|+.++...+. ++.+..+|.......
T Consensus 128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-------~~~i~~~D~l~~~~~- 199 (344)
T 2f8l_A 128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------KMTLLHQDGLANLLV- 199 (344)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------CCEEEESCTTSCCCC-
T ss_pred CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-------CceEEECCCCCcccc-
Confidence 3456899999999999999998886322 6899999999999999998876542 578999998765443
Q ss_pred CCccEEEEccCCCC------------------------chHHHHHhcCCCcEEEEEeCC
Q 028002 142 APYDAIHVGAAAPE------------------------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 142 ~~~D~V~~~~~~~~------------------------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+.||+|++++++.. ++..+.+.|+|||++++.+++
T Consensus 200 ~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~ 258 (344)
T 2f8l_A 200 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 258 (344)
T ss_dssp CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred CCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence 68999999988532 356678999999999998854
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.3e-13 Score=110.57 Aligned_cols=104 Identities=19% Similarity=0.099 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcc-cCcccCCCeEEEeCCCCCCCCC----C
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA-APLLKEGSLSVHVGDGRKGWPE----F 141 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~----~ 141 (215)
.++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|++++..++. . .+++++.+|+.+.... .
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~-g-~~~V~~vD~s~~al~~a~~n~~~ngl~~-----~~v~~~~~D~~~~~~~~~~~~ 291 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQEALDIARQNVELNKLDL-----SKAEFVRDDVFKLLRTYRDRG 291 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCG-----GGEEEEESCHHHHHHHHHHTT
T ss_pred hCCCeEEEeeccCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCc-----cceEEEECCHHHHHHHHHhcC
Confidence 56789999999999999999986 3 26899999999999999999987664 2 3789999998764321 2
Q ss_pred CCccEEEEccCCC---------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 142 APYDAIHVGAAAP---------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 142 ~~~D~V~~~~~~~---------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.+||+|+++++.. .+...+.+.|+|||+++++++..
T Consensus 292 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp CCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 6899999997651 23456789999999999987664
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-13 Score=108.36 Aligned_cols=107 Identities=20% Similarity=0.158 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
.++.+|||+|||+|..+..+++. .+..+++++|+++.+++.|++++..... .+..++++++.+|+..... ..++||
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~ar~~~~~~~~--~~~~~rv~v~~~Da~~~l~~~~~~fD 170 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAI--GYSSSKLTLHVGDGFEFMKQNQDAFD 170 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred CCCCEEEEECCCchHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhhc--ccCCCcEEEEECcHHHHHhhCCCCce
Confidence 45689999999999999999987 3457999999999999999998765210 0123689999999765321 236899
Q ss_pred EEEEccCC----------CCchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~----------~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+++... ..+++.+.++|+|||++++...+
T Consensus 171 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 171 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 99988754 23567889999999999997633
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-12 Score=102.51 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=69.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC---C
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF---A 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~ 142 (215)
+.++.+|||+|||+|..+..++..+++.++|+++|+++.+++.+++++...+. .++.++.+|+....... +
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 173 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAVSPSDPRYH 173 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGSCTTCGGGT
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCChHhcCccccccC
Confidence 77899999999999999999999876668999999999999999999988665 57999999987654321 4
Q ss_pred CccEEEEccCC
Q 028002 143 PYDAIHVGAAA 153 (215)
Q Consensus 143 ~~D~V~~~~~~ 153 (215)
+||.|+++.++
T Consensus 174 ~fD~Vl~D~Pc 184 (309)
T 2b9e_A 174 EVHYILLDPSC 184 (309)
T ss_dssp TEEEEEECCCC
T ss_pred CCCEEEEcCCc
Confidence 79999987654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=106.08 Aligned_cols=99 Identities=11% Similarity=0.095 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++.. ++ + ..+|+++|+++.+++.+++++..++.. .++.++.+|+.+.. +.||
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s~~ai~~a~~n~~~n~l~-----~~v~~~~~D~~~~~---~~fD 260 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDINPHAIELLKKNIKLNKLE-----HKIIPILSDVREVD---VKGN 260 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEESCGGGCC---CCEE
T ss_pred cCCCCEEEEccCccCHHHHh-cc--C-CCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEECChHHhc---CCCc
Confidence 56789999999999999999 76 2 279999999999999999999887653 47999999988765 7899
Q ss_pred EEEEccCC--CCchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAA--PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~--~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+++.+. ..+.+.+.++|+|||.+++....
T Consensus 261 ~Vi~dpP~~~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 261 RVIMNLPKFAHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp EEEECCTTTGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEECCcHhHHHHHHHHHHHcCCCCEEEEEEee
Confidence 99998654 35778899999999999886543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-13 Score=108.72 Aligned_cols=106 Identities=22% Similarity=0.198 Sum_probs=81.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcc-------cCCCeEEEeCCCCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL-------KEGSLSVHVGDGRKGW 138 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~-------~~~~v~~~~~d~~~~~ 138 (215)
..++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++ ... ..+ ..++++++.+|+....
T Consensus 73 ~~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~--~~l~~~~~~~~~~~v~~~~~D~~~~l 147 (281)
T 1mjf_A 73 HPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KID--NGLLEAMLNGKHEKAKLTIGDGFEFI 147 (281)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTT--TTHHHHHHTTCCSSEEEEESCHHHHH
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhc--cccccccccCCCCcEEEEECchHHHh
Confidence 345689999999999999999987 4 379999999999999999987 320 001 2368999999975432
Q ss_pred CCCCCccEEEEccCC----------CCchHHHHHhcCCCcEEEEEeCC
Q 028002 139 PEFAPYDAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~----------~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
...++||+|+++... ..+.+.+.+.|+|||++++...+
T Consensus 148 ~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 195 (281)
T 1mjf_A 148 KNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 195 (281)
T ss_dssp HHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cccCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 113689999998764 22457889999999999997543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-13 Score=108.05 Aligned_cols=99 Identities=26% Similarity=0.266 Sum_probs=79.7
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCCCccEE
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPYDAI 147 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~D~V 147 (215)
.+|||||||+|.++..+++.. +..+++++|+++.+++.|++++... ...+++++.+|+..... ..++||+|
T Consensus 91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~------~~~rv~v~~~Da~~~l~~~~~~~fDvI 163 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIP------RAPRVKIRVDDARMVAESFTPASRDVI 163 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCC------CTTTEEEEESCHHHHHHTCCTTCEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhcccc------CCCceEEEECcHHHHHhhccCCCCCEE
Confidence 499999999999999999975 4579999999999999999987532 12689999999875432 23689999
Q ss_pred EEccCCC----------CchHHHHHhcCCCcEEEEEeC
Q 028002 148 HVGAAAP----------EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 148 ~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
+++...+ .+++.+.++|+|||+|++.+.
T Consensus 164 i~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 164 IRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp EECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 9975432 245788999999999999765
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.7e-13 Score=107.88 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=82.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++..... .+..++++++.+|+..... ..++||
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~--~~~~~rv~~~~~D~~~~l~~~~~~fD 183 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSC--GFSHPKLDLFCGDGFEFLKNHKNEFD 183 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSG--GGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhcc--ccCCCCEEEEEChHHHHHHhcCCCce
Confidence 445899999999999999999863 457999999999999999998754310 0123689999999865322 236899
Q ss_pred EEEEccCC----------CCchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~----------~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+++... ..+++.+.++|+|||++++...+
T Consensus 184 ~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~ 224 (314)
T 2b2c_A 184 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 224 (314)
T ss_dssp EEEECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred EEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence 99987742 35667889999999999997644
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-13 Score=106.87 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GD 133 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d 133 (215)
+..+++.+. ...++.+|||+|||+|.++..+++. +. .+|+|+|+|+.+++.++++....... ...++.+.. .+
T Consensus 25 L~~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~-g~-~~V~gvDis~~ml~~a~~~~~~~~~~---~~~~~~~~~~~~ 98 (232)
T 3opn_A 25 LEKALKEFH-LEINGKTCLDIGSSTGGFTDVMLQN-GA-KLVYALDVGTNQLAWKIRSDERVVVM---EQFNFRNAVLAD 98 (232)
T ss_dssp HHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEECSSCCCCCHHHHTCTTEEEE---CSCCGGGCCGGG
T ss_pred HHHHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhc-CC-CEEEEEcCCHHHHHHHHHhCcccccc---ccceEEEeCHhH
Confidence 455566654 1234679999999999999999987 43 59999999999999876643211100 001221111 12
Q ss_pred CCCCCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 134 GRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
.....++...||++++. +..+++++.++|||||.+++.+
T Consensus 99 ~~~~~~d~~~~D~v~~~--l~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 99 FEQGRPSFTSIDVSFIS--LDLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp CCSCCCSEEEECCSSSC--GGGTHHHHHHHSCTTCEEEEEE
T ss_pred cCcCCCCEEEEEEEhhh--HHHHHHHHHHhccCCCEEEEEE
Confidence 21111111234444433 2567789999999999999964
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.9e-12 Score=98.72 Aligned_cols=107 Identities=15% Similarity=0.186 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEec-ChHHHHHHHHHHH-----hhcccCcccCCCeEEEeCCCCCCC--
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEH-IPELVVSSIQNIE-----KSAAAPLLKEGSLSVHVGDGRKGW-- 138 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~-s~~~~~~a~~~~~-----~~~~~~~~~~~~v~~~~~d~~~~~-- 138 (215)
.++.+|||+|||+|.++..+++. +. .+|+++|+ ++.+++.+++++. ..+... ....++.+...++.+..
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~-~~-~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 154 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLA-GA-DQVVATDYPDPEILNSLESNIREHTANSCSSET-VKRASPKVVPYRWGDSPDS 154 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHT-TC-SEEEEEECSCHHHHHHHHHHHHTTCC-----------CCCEEEECCTTSCTHH
T ss_pred cCCCeEEEecccccHHHHHHHHc-CC-CEEEEEeCCCHHHHHHHHHHHHHhhhhhccccc-CCCCCeEEEEecCCCccHH
Confidence 56789999999999999988876 43 58999999 8999999999983 322100 00026777766654321
Q ss_pred -C---CCCCccEEEEccCCCC------chHHHHHhcC---C--CcEEEEEeCC
Q 028002 139 -P---EFAPYDAIHVGAAAPE------IPQALIDQLK---P--GGRMVIPVGN 176 (215)
Q Consensus 139 -~---~~~~~D~V~~~~~~~~------~~~~~~~~Lk---~--gG~lv~~~~~ 176 (215)
. ..++||+|++...+.+ +++.+.++|+ | ||.+++.+..
T Consensus 155 ~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~ 207 (281)
T 3bzb_A 155 LQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTH 207 (281)
T ss_dssp HHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC
T ss_pred HHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEe
Confidence 1 2368999998666543 4467889999 9 9988775443
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.1e-13 Score=106.30 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=82.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
.++.+|||+|||+|..+..+++. .+..+++++|+++.+++.+++++...+.. ...++++++.+|+..... ..++||
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~--~~~~~v~~~~~D~~~~l~~~~~~fD 153 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKY-KSVENIDICEIDETVIEVSKIYFKNISCG--YEDKRVNVFIEDASKFLENVTNTYD 153 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCTTTSGG--GGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhccc--cCCCcEEEEECChHHHHHhCCCCce
Confidence 45689999999999999999876 34579999999999999999987543210 123689999999865322 137899
Q ss_pred EEEEccCCC----------CchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAP----------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+++...+ .+.+.+.+.|+|||++++...+
T Consensus 154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 194 (283)
T 2i7c_A 154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194 (283)
T ss_dssp EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence 999976432 3456789999999999998654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=99.45 Aligned_cols=95 Identities=24% Similarity=0.327 Sum_probs=76.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC--CCCCCCc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~ 144 (215)
.++.+|||+|||+|..+..+++. + .+++++|+++.+++.++++. ..+..+|+... ....++|
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~-------------~~~~~~d~~~~~~~~~~~~f 94 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKL-------------DHVVLGDIETMDMPYEEEQF 94 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTS-------------SEEEESCTTTCCCCSCTTCE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhC-------------CcEEEcchhhcCCCCCCCcc
Confidence 56789999999999999999887 4 79999999999999887532 36778887652 2233789
Q ss_pred cEEEEccCCCCc------hHHHHHhcCCCcEEEEEeCCC
Q 028002 145 DAIHVGAAAPEI------PQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|+|++...++++ ++.+.++|+|||.+++.+++.
T Consensus 95 D~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 133 (230)
T 3cc8_A 95 DCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNV 133 (230)
T ss_dssp EEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred CEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 999998877654 356788999999999987663
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-12 Score=100.58 Aligned_cols=109 Identities=14% Similarity=0.167 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCccH----HHHHHHHHhCC---CCeEEEEecChHHHHHHHHHHHhhcc----------------c---C-
Q 028002 68 PGMHALDIGSGTGY----LTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAA----------------A---P- 120 (215)
Q Consensus 68 ~~~~vLdiG~G~G~----~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~----------------~---~- 120 (215)
+..+|||+|||||. +++.+++.++. ..+|+|+|+|+.+++.|+++...... . .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 55666666542 24899999999999999986421000 0 0
Q ss_pred ccc-----CCCeEEEeCCCCCC-CCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEeCC
Q 028002 121 LLK-----EGSLSVHVGDGRKG-WPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 121 ~~~-----~~~v~~~~~d~~~~-~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
... ..++.|.+.|+.+. ++..++||+|+|...+.++ ++.+.+.|+|||+|++-...
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE 254 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSE 254 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEecc
Confidence 000 03689999998874 3323789999998876443 35678899999999995443
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8e-13 Score=106.95 Aligned_cols=107 Identities=18% Similarity=0.179 Sum_probs=82.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
.++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.|++++..... ....++++++.+|+..... ..++||
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~--~~~~~~v~~~~~D~~~~l~~~~~~fD 191 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISC--GYEDKRVNVFIEDASKFLENVTNTYD 191 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSG--GGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhcc--ccCCCcEEEEEccHHHHHhhcCCCce
Confidence 456899999999999999998763 447999999999999999998764210 1223689999999765321 236899
Q ss_pred EEEEccCC----------CCchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~----------~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+++... ..+.+.+.+.|+|||++++...+
T Consensus 192 vIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 232 (321)
T 2pt6_A 192 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 232 (321)
T ss_dssp EEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 99987632 23457789999999999997654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=105.86 Aligned_cols=107 Identities=20% Similarity=0.226 Sum_probs=81.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...... .+..++++++.+|+..... ..++||
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~-~~~~~~v~~~~~D~~~~l~~~~~~fD 153 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQG-AFDDPRAVLVIDDARAYLERTEERYD 153 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTT-GGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccc-cccCCceEEEEchHHHHHHhcCCCcc
Confidence 456899999999999999999863 4479999999999999999987542100 0112689999999865321 236899
Q ss_pred EEEEccCCCC-------------chHHHHHhcCCCcEEEEEeC
Q 028002 146 AIHVGAAAPE-------------IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 146 ~V~~~~~~~~-------------~~~~~~~~Lk~gG~lv~~~~ 175 (215)
+|+++...+. +++.+.+.|+|||++++...
T Consensus 154 ~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 9999876543 34678999999999999753
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.35 E-value=4.6e-13 Score=105.36 Aligned_cols=101 Identities=12% Similarity=-0.067 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
.+.+|||+|||+|..+..+++. + .+++++|+++.+++.|++++..... .+..++++++.+|+.... ++||+|
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~--~~~~~rv~~~~~D~~~~~---~~fD~I 143 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQLLDLDI---KKYDLI 143 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHH--HHTCTTEEEESSGGGSCC---CCEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhcc--ccCCCeEEEEechHHHHH---hhCCEE
Confidence 4579999999999999999887 4 7999999999999999887643210 012368999999987755 689999
Q ss_pred EEccCCCC-chHHHHHhcCCCcEEEEEeCC
Q 028002 148 HVGAAAPE-IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 148 ~~~~~~~~-~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+++...+. +++.+.+.|+|||++++..++
T Consensus 144 i~d~~dp~~~~~~~~~~L~pgG~lv~~~~~ 173 (262)
T 2cmg_A 144 FCLQEPDIHRIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_dssp EESSCCCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred EECCCChHHHHHHHHHhcCCCcEEEEEcCC
Confidence 99865443 468899999999999997544
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-12 Score=108.07 Aligned_cols=124 Identities=16% Similarity=0.165 Sum_probs=94.4
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhC------------CCCeEEEEecChHHHHHHHHHH
Q 028002 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG------------PQGRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~------------~~~~v~~~D~s~~~~~~a~~~~ 113 (215)
|.+.+.+.+...+++.+. ..++.+|||.|||+|.+...+++.+. ...+++|+|+++.+++.|+.++
T Consensus 151 G~fyTP~~v~~~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl 228 (445)
T 2okc_A 151 GQYFTPRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL 228 (445)
T ss_dssp GGGCCCHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred CcccCcHHHHHHHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHH
Confidence 455555566677777765 66778999999999999998887641 1257999999999999999988
Q ss_pred HhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC-----------------------chHHHHHhcCCCcEE
Q 028002 114 EKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE-----------------------IPQALIDQLKPGGRM 170 (215)
Q Consensus 114 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~-----------------------~~~~~~~~Lk~gG~l 170 (215)
...+.. ..++.+.++|....... ..||+|++++++.. ++..+.++|+|||++
T Consensus 229 ~l~g~~----~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~ 303 (445)
T 2okc_A 229 YLHGIG----TDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRA 303 (445)
T ss_dssp HHTTCC----SSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred HHhCCC----cCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEE
Confidence 765542 11577889998765443 58999999987632 356788999999999
Q ss_pred EEEeCC
Q 028002 171 VIPVGN 176 (215)
Q Consensus 171 v~~~~~ 176 (215)
++.+|+
T Consensus 304 a~V~p~ 309 (445)
T 2okc_A 304 AVVLPD 309 (445)
T ss_dssp EEEEEH
T ss_pred EEEECC
Confidence 887754
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-11 Score=101.58 Aligned_cols=123 Identities=14% Similarity=0.041 Sum_probs=92.7
Q ss_pred cccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCC----------------------------------
Q 028002 47 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP---------------------------------- 92 (215)
Q Consensus 47 ~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---------------------------------- 92 (215)
.....+.+.+.++.... ..++..|||.+||+|.+++.++.....
T Consensus 182 ~Apl~e~lAa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~ 259 (393)
T 3k0b_A 182 SAPIKETMAAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLAN 259 (393)
T ss_dssp SCSCCHHHHHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCC
T ss_pred CCCCcHHHHHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhc
Confidence 34445666666666554 677889999999999999988876421
Q ss_pred ---CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC----------chHH
Q 028002 93 ---QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE----------IPQA 159 (215)
Q Consensus 93 ---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~----------~~~~ 159 (215)
..+++|+|+++.+++.|++++...+.. +++++.++|+.+.... ++||+|++++++.. +...
T Consensus 260 ~~~~~~V~GvDid~~al~~Ar~Na~~~gl~-----~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~ 333 (393)
T 3k0b_A 260 YDQPLNIIGGDIDARLIEIAKQNAVEAGLG-----DLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYRE 333 (393)
T ss_dssp TTCCCCEEEEESCHHHHHHHHHHHHHTTCT-----TCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEECCHHHHHHHHHHHHHcCCC-----CceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHH
Confidence 145999999999999999999887764 4699999999876554 68999999998732 2233
Q ss_pred HHHhcCC--CcEEEEEeCCC
Q 028002 160 LIDQLKP--GGRMVIPVGNI 177 (215)
Q Consensus 160 ~~~~Lk~--gG~lv~~~~~~ 177 (215)
+.+.||+ ||.+++.+++.
T Consensus 334 lg~~lk~~~g~~~~iit~~~ 353 (393)
T 3k0b_A 334 MGIVYKRMPTWSVYVLTSYE 353 (393)
T ss_dssp HHHHHHTCTTCEEEEEECCT
T ss_pred HHHHHhcCCCCEEEEEECCH
Confidence 4455555 88888877653
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-12 Score=96.95 Aligned_cols=91 Identities=18% Similarity=0.232 Sum_probs=72.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.++.+|||+|||+|..+..+++ . +++|+++.+++.++++ ++.+..+|+.......++||+
T Consensus 46 ~~~~~vLDiG~G~G~~~~~l~~------~-~~vD~s~~~~~~a~~~-------------~~~~~~~d~~~~~~~~~~fD~ 105 (219)
T 1vlm_A 46 LPEGRGVEIGVGTGRFAVPLKI------K-IGVEPSERMAEIARKR-------------GVFVLKGTAENLPLKDESFDF 105 (219)
T ss_dssp CCSSCEEEETCTTSTTHHHHTC------C-EEEESCHHHHHHHHHT-------------TCEEEECBTTBCCSCTTCEEE
T ss_pred CCCCcEEEeCCCCCHHHHHHHH------H-hccCCCHHHHHHHHhc-------------CCEEEEcccccCCCCCCCeeE
Confidence 3488999999999998876642 2 9999999999998764 467888888765444478999
Q ss_pred EEEccCCCCc------hHHHHHhcCCCcEEEEEeCCC
Q 028002 147 IHVGAAAPEI------PQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 147 V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|++...++++ ++.+.++|+|||.+++..++.
T Consensus 106 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 106 ALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp EEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred EEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 9999877553 467889999999999986553
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-12 Score=113.73 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
.++.+|||+|||+|.++..+++. +. .+|+++|+|+.+++.+++++..++.. ..+++++++|+.+... ..++||
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~-ga-~~V~aVD~s~~al~~a~~N~~~ngl~----~~~v~~i~~D~~~~l~~~~~~fD 611 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLG-GA-RSTTTVDMSRTYLEWAERNLRLNGLT----GRAHRLIQADCLAWLREANEQFD 611 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHHHHTTCC----STTEEEEESCHHHHHHHCCCCEE
T ss_pred cCCCcEEEeeechhHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHHHHhcCCCcc
Confidence 46889999999999999999875 43 67999999999999999999887642 2479999999876322 236899
Q ss_pred EEEEccCCC-----------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAP-----------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~-----------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+++++.- .+...+.++|+|||+|+++++.
T Consensus 612 ~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 612 LIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp EEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 999988641 1345678999999999998876
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-12 Score=107.02 Aligned_cols=114 Identities=22% Similarity=0.192 Sum_probs=87.1
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCC
Q 028002 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 125 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 125 (215)
|+..+.+.+...+++.+. ..++.+|||+|||+|.++..+++..++..+++|+|+++.+++.| .
T Consensus 19 g~~~TP~~l~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------------~ 81 (421)
T 2ih2_A 19 GRVETPPEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------P 81 (421)
T ss_dssp --CCCCHHHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------T
T ss_pred ceEeCCHHHHHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------C
Confidence 555565666677777664 34567999999999999999998764457999999999988765 2
Q ss_pred CeEEEeCCCCCCCCCCCCccEEEEccCCC-----------------------------------CchHHHHHhcCCCcEE
Q 028002 126 SLSVHVGDGRKGWPEFAPYDAIHVGAAAP-----------------------------------EIPQALIDQLKPGGRM 170 (215)
Q Consensus 126 ~v~~~~~d~~~~~~~~~~~D~V~~~~~~~-----------------------------------~~~~~~~~~Lk~gG~l 170 (215)
++.+.++|....... +.||+|++++++. .+++.+.++|+|||.+
T Consensus 82 ~~~~~~~D~~~~~~~-~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~ 160 (421)
T 2ih2_A 82 WAEGILADFLLWEPG-EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVL 160 (421)
T ss_dssp TEEEEESCGGGCCCS-SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEE
T ss_pred CCcEEeCChhhcCcc-CCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEE
Confidence 678999998775443 6899999987652 1245677899999999
Q ss_pred EEEeCCC
Q 028002 171 VIPVGNI 177 (215)
Q Consensus 171 v~~~~~~ 177 (215)
++.+++.
T Consensus 161 ~~i~p~~ 167 (421)
T 2ih2_A 161 VFVVPAT 167 (421)
T ss_dssp EEEEEGG
T ss_pred EEEEChH
Confidence 9988764
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.1e-12 Score=94.65 Aligned_cols=94 Identities=21% Similarity=0.258 Sum_probs=71.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCC--------CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE-eCCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQ--------GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH-VGDGRK 136 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~--------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~-~~d~~~ 136 (215)
+.++.+|||+|||+|..+..+++.+++. .+++++|+++.. . ..++.+. .+|+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~------~~~~~~~~~~d~~~ 82 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------P------LEGATFLCPADVTD 82 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------C------CTTCEEECSCCTTS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------c------CCCCeEEEeccCCC
Confidence 5778999999999999999999987543 689999999831 0 1467888 888654
Q ss_pred CC--------CCCCCccEEEEccCCC-----------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 137 GW--------PEFAPYDAIHVGAAAP-----------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 137 ~~--------~~~~~~D~V~~~~~~~-----------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.. ...++||+|+++...+ .+++.+.++|||||.+++.+..
T Consensus 83 ~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 83 PRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp HHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 21 1225899999976443 3445678999999999998654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.6e-12 Score=100.63 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=74.0
Q ss_pred cCCcc-cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcc
Q 028002 44 GYNAT-ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL 122 (215)
Q Consensus 44 ~~~~~-~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 122 (215)
.+|++ +..+.+...+++.+. ..++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++...+.
T Consensus 19 ~~Gq~fl~~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~~~~---- 89 (299)
T 2h1r_A 19 FQGQHLLKNPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYEGY---- 89 (299)
T ss_dssp ----CEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHHTTC----
T ss_pred ccccceecCHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC----
Confidence 44554 357778888888876 7788999999999999999998763 7999999999999999998865443
Q ss_pred cCCCeEEEeCCCCCCCCCCCCccEEEEccCCC
Q 028002 123 KEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP 154 (215)
Q Consensus 123 ~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~ 154 (215)
.+++++.+|+..... ..||+|+++.+..
T Consensus 90 --~~v~~~~~D~~~~~~--~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 90 --NNLEVYEGDAIKTVF--PKFDVCTANIPYK 117 (299)
T ss_dssp --CCEEC----CCSSCC--CCCSEEEEECCGG
T ss_pred --CceEEEECchhhCCc--ccCCEEEEcCCcc
Confidence 589999999876543 4799999987754
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=102.01 Aligned_cols=121 Identities=16% Similarity=0.079 Sum_probs=91.2
Q ss_pred cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCC------------------------------------
Q 028002 49 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP------------------------------------ 92 (215)
Q Consensus 49 ~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~------------------------------------ 92 (215)
...+.+.+.++.... ..++.+|||.+||+|.+++.++.....
T Consensus 178 pl~e~lAa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~ 255 (385)
T 3ldu_A 178 PIRETLAAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNE 255 (385)
T ss_dssp CCCHHHHHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred CCcHHHHHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhcc
Confidence 334555555555543 677899999999999999998876421
Q ss_pred -CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC----------chHHHH
Q 028002 93 -QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE----------IPQALI 161 (215)
Q Consensus 93 -~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~----------~~~~~~ 161 (215)
..+|+|+|+++.+++.|++++...+.. +++++.++|+.+.... ..||+|++++++.. +...+.
T Consensus 256 ~~~~V~GvDid~~ai~~Ar~Na~~~gl~-----~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg 329 (385)
T 3ldu_A 256 SKFKIYGYDIDEESIDIARENAEIAGVD-----EYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELG 329 (385)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHHTCG-----GGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHcCCC-----CceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHH
Confidence 147999999999999999999887764 4799999999886554 68999999999742 223344
Q ss_pred HhcCC--CcEEEEEeCCC
Q 028002 162 DQLKP--GGRMVIPVGNI 177 (215)
Q Consensus 162 ~~Lk~--gG~lv~~~~~~ 177 (215)
+.|++ ||.+++.+++.
T Consensus 330 ~~lk~~~g~~~~iit~~~ 347 (385)
T 3ldu_A 330 YAFRKLKNWSYYLITSYE 347 (385)
T ss_dssp HHHHTSBSCEEEEEESCT
T ss_pred HHHhhCCCCEEEEEECCH
Confidence 55655 88888777653
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-11 Score=99.51 Aligned_cols=122 Identities=12% Similarity=0.041 Sum_probs=93.1
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCC-----------------------------------
Q 028002 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP----------------------------------- 92 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~----------------------------------- 92 (215)
....+.+.+.++.... ..++..|+|.+||+|.+.+.++.....
T Consensus 176 Apl~e~LAaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~ 253 (384)
T 3ldg_A 176 APIKENMAAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADY 253 (384)
T ss_dssp CCCCHHHHHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCT
T ss_pred CCCcHHHHHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhc
Confidence 3345555666666554 677899999999999999988876421
Q ss_pred --CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC----------chHHH
Q 028002 93 --QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE----------IPQAL 160 (215)
Q Consensus 93 --~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~----------~~~~~ 160 (215)
..+++|+|+++.+++.|++++...+.. +.+++.++|+.+.... ..||+|++++++.. +...+
T Consensus 254 ~~~~~v~GvDid~~al~~Ar~Na~~~gl~-----~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~l 327 (384)
T 3ldg_A 254 DIQLDISGFDFDGRMVEIARKNAREVGLE-----DVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEM 327 (384)
T ss_dssp TCCCCEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHH
T ss_pred cCCceEEEEECCHHHHHHHHHHHHHcCCC-----CceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHH
Confidence 145999999999999999999987764 5799999999876554 68999999998632 22345
Q ss_pred HHhcCC--CcEEEEEeCCC
Q 028002 161 IDQLKP--GGRMVIPVGNI 177 (215)
Q Consensus 161 ~~~Lk~--gG~lv~~~~~~ 177 (215)
.+.||+ ||.+++.+++.
T Consensus 328 g~~lk~~~g~~~~iit~~~ 346 (384)
T 3ldg_A 328 GETFAPLKTWSQFILTNDT 346 (384)
T ss_dssp HHHHTTCTTSEEEEEESCT
T ss_pred HHHHhhCCCcEEEEEECCH
Confidence 556665 89888887764
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-10 Score=87.14 Aligned_cols=111 Identities=21% Similarity=0.179 Sum_probs=80.5
Q ss_pred cchhHHHHHHHHHHHh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028002 49 ISAPHMHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 49 ~~~~~~~~~~l~~l~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
.+.+.+...++..+.. ...++.+|||+|||+|.++..+++. +. .+++++|+++.+++.+++++...+ .++
T Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~-------~~~ 99 (207)
T 1wy7_A 29 RTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-GA-KEVICVEVDKEAVDVLIENLGEFK-------GKF 99 (207)
T ss_dssp CCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHTGGGT-------TSE
T ss_pred cCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHHHHHcC-------CCE
Confidence 3444445555554431 1446789999999999999999887 43 589999999999999999876643 178
Q ss_pred EEEeCCCCCCCCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEE
Q 028002 128 SVHVGDGRKGWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 128 ~~~~~d~~~~~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~ 173 (215)
+++.+|+.+. + ++||+|++++++.. +++.+.+.+ ||.+++.
T Consensus 100 ~~~~~d~~~~-~--~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 100 KVFIGDVSEF-N--SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp EEEESCGGGC-C--CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred EEEECchHHc-C--CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence 9999998774 2 58999999988643 335566666 5544443
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-12 Score=109.51 Aligned_cols=98 Identities=20% Similarity=0.223 Sum_probs=78.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC--CCCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~ 143 (215)
+..+.+|||+|||+|.++..++++ | .+|+|+|.++.+++.|+....+.+. .++++.++++.+. ....+.
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~-g--a~V~giD~~~~~i~~a~~~a~~~~~------~~~~~~~~~~~~~~~~~~~~~ 134 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASK-G--ATIVGIDFQQENINVCRALAEENPD------FAAEFRVGRIEEVIAALEEGE 134 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHTSTT------SEEEEEECCHHHHHHHCCTTS
T ss_pred cCCCCeEEEECCCCcHHHHHHHhC-C--CEEEEECCCHHHHHHHHHHHHhcCC------CceEEEECCHHHHhhhccCCC
Confidence 455689999999999999999998 4 7899999999999999988776543 3789999998764 223378
Q ss_pred ccEEEEccCCCCchH--------HHHHhcCCCcEEEE
Q 028002 144 YDAIHVGAAAPEIPQ--------ALIDQLKPGGRMVI 172 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~--------~~~~~Lk~gG~lv~ 172 (215)
||+|+|...++|+.+ .+.+.|+++|..++
T Consensus 135 fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~ 171 (569)
T 4azs_A 135 FDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVI 171 (569)
T ss_dssp CSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred ccEEEECcchhcCCCHHHHHHHHHHHHHhccccceee
Confidence 999999999988763 35566778776554
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.8e-12 Score=99.65 Aligned_cols=106 Identities=19% Similarity=0.111 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE-eCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH-VGD 133 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~-~~d 133 (215)
+..+++.+. ...++.+|||+|||||.++..+++. +. .+|+++|+++.|++.+.++- .++... ..+
T Consensus 73 l~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga-~~V~aVDvs~~mL~~a~r~~-----------~rv~~~~~~n 138 (291)
T 3hp7_A 73 LEKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GA-KLVYAVDVGTNQLVWKLRQD-----------DRVRSMEQYN 138 (291)
T ss_dssp HHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEECSSSSCSCHHHHTC-----------TTEEEECSCC
T ss_pred HHHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CC-CEEEEEECCHHHHHHHHHhC-----------cccceecccC
Confidence 345555554 1235679999999999999999887 33 69999999999998854321 233222 223
Q ss_pred CCCCC---CCCCCccEEEEccCCCC---chHHHHHhcCCCcEEEEEe
Q 028002 134 GRKGW---PEFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 134 ~~~~~---~~~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~~ 174 (215)
+.... .+...||+|+++..+.. ++.++.++|+|||.+++.+
T Consensus 139 i~~l~~~~l~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~lv 185 (291)
T 3hp7_A 139 FRYAEPVDFTEGLPSFASIDVSFISLNLILPALAKILVDGGQVVALV 185 (291)
T ss_dssp GGGCCGGGCTTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEEE
T ss_pred ceecchhhCCCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEEE
Confidence 22211 12135999999887654 5688999999999999974
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.9e-12 Score=97.19 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=83.6
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.+.+..+|||+|||+|-++..++.. .+..+|+++|+++.+++.+++++..++. ...+...|.....+. ++|
T Consensus 129 ~i~~p~~VLDLGCG~GpLAl~~~~~-~p~a~y~a~DId~~~le~a~~~l~~~g~-------~~~~~v~D~~~~~p~-~~~ 199 (281)
T 3lcv_B 129 HLPRPNTLRDLACGLNPLAAPWMGL-PAETVYIASDIDARLVGFVDEALTRLNV-------PHRTNVADLLEDRLD-EPA 199 (281)
T ss_dssp GSCCCSEEEETTCTTGGGCCTTTTC-CTTCEEEEEESBHHHHHHHHHHHHHTTC-------CEEEEECCTTTSCCC-SCC
T ss_pred ccCCCceeeeeccCccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHHhcCC-------CceEEEeeecccCCC-CCc
Confidence 4566789999999999999999876 4668999999999999999999988663 578899998877766 889
Q ss_pred cEEEEccCCCCchH-------HHHHhcCCCcEEEE
Q 028002 145 DAIHVGAAAPEIPQ-------ALIDQLKPGGRMVI 172 (215)
Q Consensus 145 D~V~~~~~~~~~~~-------~~~~~Lk~gG~lv~ 172 (215)
|++++.-.++++-+ ++...|+++|.++-
T Consensus 200 DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 200 DVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVT 234 (281)
T ss_dssp SEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEE
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEe
Confidence 99999988876553 57889999998764
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.1e-12 Score=101.81 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=73.5
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|..+..+++.. +..+++++|++ .++. +++....+. .++++++.+|+.+..+ +||
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~--~~~~~~~~~-----~~~v~~~~~d~~~~~p---~~D 249 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDRA-EVVA--RHRLDAPDV-----AGRWKVVEGDFLREVP---HAD 249 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEECH-HHHT--TCCCCCGGG-----TTSEEEEECCTTTCCC---CCS
T ss_pred ccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecCH-HHhh--cccccccCC-----CCCeEEEecCCCCCCC---CCc
Confidence 5667899999999999999999985 56789999994 4433 222222222 2579999999974433 899
Q ss_pred EEEEccCCCCch--------HHHHHhcCCCcEEEEEe
Q 028002 146 AIHVGAAAPEIP--------QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~ 174 (215)
+|++...++++. +++.+.|||||+|++..
T Consensus 250 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 250 VHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVID 286 (348)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred EEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999998886543 56889999999999854
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-13 Score=113.24 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=72.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.|+++ +.. .....+...+........++||
T Consensus 105 ~~~~~~VLDiGcG~G~~~~~l~~~g---~~v~gvD~s~~~~~~a~~~----~~~----~~~~~~~~~~~~~l~~~~~~fD 173 (416)
T 4e2x_A 105 TGPDPFIVEIGCNDGIMLRTIQEAG---VRHLGFEPSSGVAAKAREK----GIR----VRTDFFEKATADDVRRTEGPAN 173 (416)
T ss_dssp CSSSCEEEEETCTTTTTHHHHHHTT---CEEEEECCCHHHHHHHHTT----TCC----EECSCCSHHHHHHHHHHHCCEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHcC---CcEEEECCCHHHHHHHHHc----CCC----cceeeechhhHhhcccCCCCEE
Confidence 4678899999999999999999873 5999999999999998764 110 0000011111111111237899
Q ss_pred EEEEccCCCCch------HHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAPEIP------QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~~~------~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++...++++. +++.++|||||++++.+++
T Consensus 174 ~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 174 VIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp EEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999999887754 6789999999999998764
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=7e-12 Score=94.04 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
.++.+.+. ..+++.+|||+|||+|..+..+++. .++|+++|+++.. . ..++.++++|+.
T Consensus 14 ~ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~------~~~v~~~~~D~~ 72 (191)
T 3dou_A 14 EFLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------E------IAGVRFIRCDIF 72 (191)
T ss_dssp HHHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------C------CTTCEEEECCTT
T ss_pred HHHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------c------CCCeEEEEcccc
Confidence 34444443 3578899999999999999999887 2899999999741 1 158899999987
Q ss_pred CCCC--------C---CCCccEEEEccCCC-----------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 136 KGWP--------E---FAPYDAIHVGAAAP-----------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~~--------~---~~~~D~V~~~~~~~-----------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+... . .++||+|+++.... .+++.+.++|||||.|++.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~ 141 (191)
T 3dou_A 73 KETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQ 141 (191)
T ss_dssp SSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcC
Confidence 6431 0 03899999986432 1234568899999999986643
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=96.12 Aligned_cols=104 Identities=11% Similarity=0.001 Sum_probs=82.2
Q ss_pred Ccc-cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028002 46 NAT-ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 46 ~~~-~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
|++ +..+.+...+++.+. ..++ +|||+|||+|.++..+++.. .+|+++|+|+.+++.+++++..
T Consensus 26 GQnfL~d~~i~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~--------- 90 (271)
T 3fut_A 26 GQNFLVSEAHLRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSG--------- 90 (271)
T ss_dssp SCCEECCHHHHHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTT---------
T ss_pred CccccCCHHHHHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCC---------
Confidence 553 457778889999886 7788 99999999999999999884 7899999999999999987642
Q ss_pred CCeEEEeCCCCCCCCCC-CCccEEEEccCCCCchHHHHHhc
Q 028002 125 GSLSVHVGDGRKGWPEF-APYDAIHVGAAAPEIPQALIDQL 164 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~~~-~~~D~V~~~~~~~~~~~~~~~~L 164 (215)
.+++++++|+....... ..+|.|+++.+..-....+.++|
T Consensus 91 ~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy~iss~il~~ll 131 (271)
T 3fut_A 91 LPVRLVFQDALLYPWEEVPQGSLLVANLPYHIATPLVTRLL 131 (271)
T ss_dssp SSEEEEESCGGGSCGGGSCTTEEEEEEECSSCCHHHHHHHH
T ss_pred CCEEEEECChhhCChhhccCccEEEecCcccccHHHHHHHh
Confidence 58999999998754321 36899999988765444444444
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.27 E-value=6.4e-11 Score=89.10 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=73.0
Q ss_pred HHHHHHHHHHh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028002 54 MHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 54 ~~~~~l~~l~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
+...++..+.. ...++.+|||+|||+|.++..+++. +. .+++++|+++.+++.+++++. +++++.+
T Consensus 36 ~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~-~~-~~v~~vD~~~~~~~~a~~~~~-----------~~~~~~~ 102 (200)
T 1ne2_A 36 TAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-GA-ESVTAFDIDPDAIETAKRNCG-----------GVNFMVA 102 (200)
T ss_dssp HHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-TB-SEEEEEESCHHHHHHHHHHCT-----------TSEEEEC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHhcC-----------CCEEEEC
Confidence 34444444321 1446789999999999999999886 32 579999999999999988642 6789999
Q ss_pred CCCCCCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028002 133 DGRKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 133 d~~~~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
|+... + ++||+|+++.++++. ++.+.+.+ |.+++.+
T Consensus 103 d~~~~-~--~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~ 146 (200)
T 1ne2_A 103 DVSEI-S--GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIG 146 (200)
T ss_dssp CGGGC-C--CCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEE
T ss_pred cHHHC-C--CCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEE
Confidence 98774 2 689999999886543 34556666 4444443
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.1e-11 Score=88.81 Aligned_cols=98 Identities=14% Similarity=0.068 Sum_probs=76.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcc--cCcccCCCeEEEeCCCCCC------
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA--APLLKEGSLSVHVGDGRKG------ 137 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~v~~~~~d~~~~------ 137 (215)
+.+..+|||+|| |+.++.+++. ++++|+++|.++...+.+++++...+. . ++++++.+|+...
T Consensus 28 l~~a~~VLEiGt--GySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~-----~~I~~~~gda~~~~~wg~p 98 (202)
T 3cvo_A 28 YEEAEVILEYGS--GGSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAANPPAEG-----TEVNIVWTDIGPTGDWGHP 98 (202)
T ss_dssp HHHCSEEEEESC--SHHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHHSCCCTT-----CEEEEEECCCSSBCGGGCB
T ss_pred hhCCCEEEEECc--hHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-----CceEEEEeCchhhhccccc
Confidence 345679999998 5777777764 248999999999999999999988764 3 6899999996543
Q ss_pred --------C----------CCCCCccEEEEccCCC-CchHHHHHhcCCCcEEEE
Q 028002 138 --------W----------PEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 138 --------~----------~~~~~~D~V~~~~~~~-~~~~~~~~~Lk~gG~lv~ 172 (215)
+ ...++||+|+.++... .....+.++|+|||++++
T Consensus 99 ~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 99 VSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp SSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSHHHHHHHHHHHCSSCEEEEE
T ss_pred ccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCchhHHHHHHHhcCCCeEEEE
Confidence 1 1236899999998753 334557799999999977
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.3e-11 Score=90.95 Aligned_cols=94 Identities=16% Similarity=0.047 Sum_probs=77.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.+..+|||+|||+|.++..+. +..+|+++|+|+.+++.+++++..++ .+..+..+|.....+. ++||+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g-------~~~~~~v~D~~~~~~~-~~~Dv 171 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKD-------WDFTFALQDVLCAPPA-EAGDL 171 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTT-------CEEEEEECCTTTSCCC-CBCSE
T ss_pred CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcC-------CCceEEEeecccCCCC-CCcch
Confidence 557899999999999998877 34899999999999999999987655 4788999999877766 69999
Q ss_pred EEEccCCCCch-------HHHHHhcCCCcEEEE
Q 028002 147 IHVGAAAPEIP-------QALIDQLKPGGRMVI 172 (215)
Q Consensus 147 V~~~~~~~~~~-------~~~~~~Lk~gG~lv~ 172 (215)
|++.-.++++- -++...|+++|+++-
T Consensus 172 vLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVs 204 (253)
T 3frh_A 172 ALIFKLLPLLEREQAGSAMALLQSLNTPRMAVS 204 (253)
T ss_dssp EEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEE
T ss_pred HHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEE
Confidence 99987775543 267788999876553
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=102.48 Aligned_cols=104 Identities=12% Similarity=0.053 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCC-eEEEeCCCCCCCC--CCCC
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS-LSVHVGDGRKGWP--EFAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~--~~~~ 143 (215)
.++.+|||++||+|..++.+++..+...+|+++|+++.+++.+++|+..++.. ++ ++++.+|+..... ..+.
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~-----~~~v~v~~~Da~~~l~~~~~~~ 125 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP-----EDRYEIHGMEANFFLRKEWGFG 125 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC-----GGGEEEECSCHHHHHHSCCSSC
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CceEEEEeCCHHHHHHHhhCCC
Confidence 56789999999999999999987432268999999999999999999988763 34 8999999755322 1257
Q ss_pred ccEEEEccCC--CCchHHHHHhcCCCcEEEEEeC
Q 028002 144 YDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 144 ~D~V~~~~~~--~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
||+|++++.. ..+++.+.+.|++||+|++++.
T Consensus 126 fD~V~lDP~g~~~~~l~~a~~~Lk~gGll~~t~t 159 (392)
T 3axs_A 126 FDYVDLDPFGTPVPFIESVALSMKRGGILSLTAT 159 (392)
T ss_dssp EEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcEEEECCCcCHHHHHHHHHHHhCCCCEEEEEec
Confidence 9999999832 2467788899999999988773
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.5e-12 Score=102.66 Aligned_cols=100 Identities=15% Similarity=0.094 Sum_probs=82.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh---------------cccCcccCCCeEEEeC
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS---------------AAAPLLKEGSLSVHVG 132 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~---------------~~~~~~~~~~v~~~~~ 132 (215)
++.+|||+|||+|..++.+++..+ ..+|+++|+++.+++.+++|+..+ +. .+++++++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl------~~i~v~~~ 119 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE------KTIVINHD 119 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS------SEEEEEES
T ss_pred CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC------CceEEEcC
Confidence 578999999999999999999854 367999999999999999999887 43 34899999
Q ss_pred CCCCCCCC-CCCccEEEEccCCC--CchHHHHHhcCCCcEEEEEe
Q 028002 133 DGRKGWPE-FAPYDAIHVGAAAP--EIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 133 d~~~~~~~-~~~~D~V~~~~~~~--~~~~~~~~~Lk~gG~lv~~~ 174 (215)
|+...... .+.||+|+.++... .+++.+.+.|++||.+++++
T Consensus 120 Da~~~~~~~~~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 120 DANRLMAERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp CHHHHHHHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cHHHHHHhccCCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEe
Confidence 98653221 25799999887543 46688889999999988875
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=96.38 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=75.9
Q ss_pred CCcc-cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCccc
Q 028002 45 YNAT-ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 123 (215)
Q Consensus 45 ~~~~-~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~ 123 (215)
+|++ +..+.+...+++.+. ..++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.+++++..
T Consensus 7 ~GQnFL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~-------- 73 (255)
T 3tqs_A 7 FGQHFLHDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQ-------- 73 (255)
T ss_dssp --CCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTT--------
T ss_pred CCcccccCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhh--------
Confidence 3553 457778888998886 7888999999999999999999874 7999999999999999988754
Q ss_pred CCCeEEEeCCCCCCCCC----CCCccEEEEccCC
Q 028002 124 EGSLSVHVGDGRKGWPE----FAPYDAIHVGAAA 153 (215)
Q Consensus 124 ~~~v~~~~~d~~~~~~~----~~~~D~V~~~~~~ 153 (215)
..+++++++|+...... .++|| |+++.+.
T Consensus 74 ~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~NlPY 106 (255)
T 3tqs_A 74 QKNITIYQNDALQFDFSSVKTDKPLR-VVGNLPY 106 (255)
T ss_dssp CTTEEEEESCTTTCCGGGSCCSSCEE-EEEECCH
T ss_pred CCCcEEEEcchHhCCHHHhccCCCeE-EEecCCc
Confidence 15899999999875432 24687 7777665
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-11 Score=101.64 Aligned_cols=93 Identities=22% Similarity=0.273 Sum_probs=70.6
Q ss_pred CCCCCEEEEEcCC------ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC
Q 028002 66 LKPGMHALDIGSG------TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 139 (215)
Q Consensus 66 ~~~~~~vLdiG~G------~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 139 (215)
..++.+||||||| +|..+..+++...+..+|+++|+++.+. . ...+++++++|+.+...
T Consensus 214 ~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~-------~~~rI~fv~GDa~dlpf 278 (419)
T 3sso_A 214 RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V-------DELRIRTIQGDQNDAEF 278 (419)
T ss_dssp TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G-------CBTTEEEEECCTTCHHH
T ss_pred cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h-------cCCCcEEEEecccccch
Confidence 3456899999999 7777777777655668999999999972 0 11689999999876422
Q ss_pred C------CCCccEEEEccCCC-----CchHHHHHhcCCCcEEEEE
Q 028002 140 E------FAPYDAIHVGAAAP-----EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~------~~~~D~V~~~~~~~-----~~~~~~~~~Lk~gG~lv~~ 173 (215)
. .++||+|+++.... ..++++.++|||||++++.
T Consensus 279 ~~~l~~~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 279 LDRIARRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp HHHHHHHHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hhhhhcccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEE
Confidence 2 37899999976431 1346788999999999995
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-10 Score=90.80 Aligned_cols=115 Identities=22% Similarity=0.214 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCc--cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
+.+.+..+.. ...-.+|||+|||+ +..+..+++...+..+|+++|.|+.|++.|++++.... ..++.++++
T Consensus 66 l~rav~~l~~-~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~------~~~~~~v~a 138 (277)
T 3giw_A 66 MNRAVAHLAK-EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP------EGRTAYVEA 138 (277)
T ss_dssp HHHHHHHHHH-TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS------SSEEEEEEC
T ss_pred HHHHHHHhcc-ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC------CCcEEEEEe
Confidence 3444444431 12236899999997 44455555554567899999999999999998875432 147999999
Q ss_pred CCCCCC---CC---CCCcc-----EEEEccCCCCch---------HHHHHhcCCCcEEEEEeCC
Q 028002 133 DGRKGW---PE---FAPYD-----AIHVGAAAPEIP---------QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 133 d~~~~~---~~---~~~~D-----~V~~~~~~~~~~---------~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+.+.. .. .+.|| .|+++..++++. ..+.+.|+|||+|+++...
T Consensus 139 D~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~ 202 (277)
T 3giw_A 139 DMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT 202 (277)
T ss_dssp CTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred cccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence 997631 10 13454 577888776543 4567789999999998543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-11 Score=91.82 Aligned_cols=93 Identities=16% Similarity=0.076 Sum_probs=70.3
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ...++.+|||+|||+|..+..++ .+++++|+++. ++.+..+|+.
T Consensus 56 ~~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~---------------------~~~~~~~d~~ 107 (215)
T 2zfu_A 56 DRIARDLR-QRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL---------------------DPRVTVCDMA 107 (215)
T ss_dssp HHHHHHHH-TSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS---------------------STTEEESCTT
T ss_pred HHHHHHHh-ccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC---------------------CceEEEeccc
Confidence 34556654 34667899999999999887662 68999999987 2356777877
Q ss_pred CCCCCCCCccEEEEccCCCC-----chHHHHHhcCCCcEEEEEeCC
Q 028002 136 KGWPEFAPYDAIHVGAAAPE-----IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~-----~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
......++||+|++...+++ +++++.++|+|||.+++....
T Consensus 108 ~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 153 (215)
T 2zfu_A 108 QVPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVS 153 (215)
T ss_dssp SCSCCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred cCCCCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence 65444478999999888753 346788999999999997543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.5e-13 Score=105.04 Aligned_cols=116 Identities=15% Similarity=0.080 Sum_probs=88.4
Q ss_pred cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE
Q 028002 49 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 49 ~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
...+.+...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+|+.+++.+++++.. ..+++
T Consensus 12 l~~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~--------~~~v~ 78 (245)
T 1yub_A 12 LTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKL--------NTRVT 78 (245)
T ss_dssp CCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTT--------CSEEE
T ss_pred CCCHHHHHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhcc--------CCceE
Confidence 445556788888775 6778899999999999999999884 7899999999999888766531 15789
Q ss_pred EEeCCCCCCCCC-CCCccEEEEccCCC-----------------Cch----HHHHHhcCCCcEEEEEeCCCc
Q 028002 129 VHVGDGRKGWPE-FAPYDAIHVGAAAP-----------------EIP----QALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 129 ~~~~d~~~~~~~-~~~~D~V~~~~~~~-----------------~~~----~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
++.+|+.+.... .++| .|+++.+.. ..+ +.+.++|+|||.+.+.+....
T Consensus 79 ~~~~D~~~~~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~~~ 149 (245)
T 1yub_A 79 LIHQDILQFQFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLHTQV 149 (245)
T ss_dssp ECCSCCTTTTCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTTTTB
T ss_pred EEECChhhcCcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhheehe
Confidence 999999875433 2578 777765432 122 568899999999988765543
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-11 Score=103.24 Aligned_cols=129 Identities=17% Similarity=0.194 Sum_probs=93.0
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCC-----------------CCeEEEEecChHHHHH
Q 028002 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP-----------------QGRAVGVEHIPELVVS 108 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-----------------~~~v~~~D~s~~~~~~ 108 (215)
|.+.+.+.+...+++.+. ..++.+|+|.|||+|.+...+++.+.. ...++|+|+++.+++.
T Consensus 149 G~fyTP~~iv~~mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~l 226 (541)
T 2ar0_A 149 GQYFTPRPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 226 (541)
T ss_dssp -CCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred CeeeCCHHHHHHHHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHH
Confidence 556555556666677665 667889999999999999988876521 1379999999999999
Q ss_pred HHHHHHhhcccCcccCCCeEEEeCCCCCCC-CCCCCccEEEEccCCCC--------------------chHHHHHhcCCC
Q 028002 109 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYDAIHVGAAAPE--------------------IPQALIDQLKPG 167 (215)
Q Consensus 109 a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~V~~~~~~~~--------------------~~~~~~~~Lk~g 167 (215)
|+.++...+..... ...+.+.++|..... .....||+|++++++.. ++..+.+.|+||
T Consensus 227 A~~nl~l~gi~~~~-~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g 305 (541)
T 2ar0_A 227 ALMNCLLHDIEGNL-DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 305 (541)
T ss_dssp HHHHHHTTTCCCBG-GGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHhCCCccc-cccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCC
Confidence 99988765542000 012678888876532 22368999999987632 446678999999
Q ss_pred cEEEEEeCCC
Q 028002 168 GRMVIPVGNI 177 (215)
Q Consensus 168 G~lv~~~~~~ 177 (215)
|++.+.+|++
T Consensus 306 Gr~a~V~p~~ 315 (541)
T 2ar0_A 306 GRAAVVVPDN 315 (541)
T ss_dssp EEEEEEEEHH
T ss_pred CEEEEEecCc
Confidence 9999877653
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.3e-11 Score=94.74 Aligned_cols=99 Identities=13% Similarity=0.053 Sum_probs=69.8
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEec----ChHHHHHHHHHHHhhcccCcccCCCeEEEeC-CCCCCCC
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEH----IPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGWP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~----s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~ 139 (215)
.++++.+|||+|||+|..+..+++. ++|+++|+ ++.+++... .. ....+++.++.+ |+....
T Consensus 79 ~~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~------~~~~~~v~~~~~~D~~~l~- 145 (305)
T 2p41_A 79 LVTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MS------TYGWNLVRLQSGVDVFFIP- 145 (305)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CC------STTGGGEEEECSCCTTTSC-
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hh------hcCCCCeEEEeccccccCC-
Confidence 3577899999999999999999876 47999999 554332110 00 011257889988 776542
Q ss_pred CCCCccEEEEccCCC------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 140 EFAPYDAIHVGAAAP------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.++||+|+++.... ..+..+.++|||||.|++.+...
T Consensus 146 -~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 146 -PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp -CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred -cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 26899999987653 12345679999999999966543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.4e-10 Score=88.00 Aligned_cols=115 Identities=14% Similarity=0.050 Sum_probs=84.1
Q ss_pred cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE
Q 028002 49 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 49 ~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
...+.+...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+|+.+++.+++++... .+++
T Consensus 13 l~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~--------~~v~ 79 (244)
T 1qam_A 13 ITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDH--------DNFQ 79 (244)
T ss_dssp CCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTC--------CSEE
T ss_pred cCCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccC--------CCeE
Confidence 455666777777665 6678999999999999999999984 79999999999999999876431 5899
Q ss_pred EEeCCCCCCCCC-CCCccEEEEccCCC-----------------Cch----HHHHHhcCCCcEEEEEeCCC
Q 028002 129 VHVGDGRKGWPE-FAPYDAIHVGAAAP-----------------EIP----QALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 129 ~~~~d~~~~~~~-~~~~D~V~~~~~~~-----------------~~~----~~~~~~Lk~gG~lv~~~~~~ 177 (215)
++.+|+...... ...| .|+++.+.. .+. +.+.++++++|.+.+.....
T Consensus 80 ~~~~D~~~~~~~~~~~~-~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~~ 149 (244)
T 1qam_A 80 VLNKDILQFKFPKNQSY-KIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLALFLMAE 149 (244)
T ss_dssp EECCCGGGCCCCSSCCC-EEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHHHHHTTT
T ss_pred EEEChHHhCCcccCCCe-EEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchhHHhhhh
Confidence 999998875443 2345 566654431 111 34778888888776654443
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.8e-11 Score=97.89 Aligned_cols=91 Identities=18% Similarity=0.239 Sum_probs=74.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ ..+++++.+|+....+ . ||
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~~~~--~-~D 269 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP------------LSGIEHVGGDMFASVP--Q-GD 269 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTTCCC--C-EE
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh------------cCCCEEEeCCcccCCC--C-CC
Confidence 3557899999999999999999985 6678999999 888876643 1479999999877332 3 99
Q ss_pred EEEEccCCCCc--------hHHHHHhcCCCcEEEEE
Q 028002 146 AIHVGAAAPEI--------PQALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~ 173 (215)
+|++...++++ ++++.+.|+|||+|++.
T Consensus 270 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 270 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99999888654 35688999999999986
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=95.69 Aligned_cols=92 Identities=22% Similarity=0.242 Sum_probs=74.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+..+|||+|||+|..+..+++.. |..+++++|+ +.+++.+++ ..+++++.+|+.+..+. . |
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~~~p~--~-D 261 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ------------FPGVTHVGGDMFKEVPS--G-D 261 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTTCCCC--C-S
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh------------cCCeEEEeCCcCCCCCC--C-C
Confidence 4456899999999999999999985 6679999999 777766542 15899999998874442 3 9
Q ss_pred EEEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028002 146 AIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
+|++...++++ ++++.+.|+|||+|++..
T Consensus 262 ~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 262 TILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 99999888754 456889999999999853
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-10 Score=93.45 Aligned_cols=99 Identities=20% Similarity=0.221 Sum_probs=79.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+..+|+|+|||+|..+..+++.. |..+++..|. +.+++.+++++.... .++++++.+|+..... ..+|
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~------~~rv~~~~gD~~~~~~--~~~D 246 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQE------EEQIDFQEGDFFKDPL--PEAD 246 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC--------CCSEEEEESCTTTSCC--CCCS
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcc------cCceeeecCccccCCC--CCce
Confidence 3456799999999999999999995 7788999997 788999988765432 2689999999876533 3589
Q ss_pred EEEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028002 146 AIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
+|++...++++ ++++.+.|+|||++++.-
T Consensus 247 ~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e 283 (353)
T 4a6d_A 247 LYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIE 283 (353)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 99999888754 356788999999998853
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.7e-11 Score=96.74 Aligned_cols=91 Identities=19% Similarity=0.273 Sum_probs=73.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.+..+|||+|||+|..+..+++.. |..+++++|+ +.+++.+++ ..+++++.+|+.+..+. . |+
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~~~p~--~-D~ 264 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPA------------FSGVEHLGGDMFDGVPK--G-DA 264 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------------CTTEEEEECCTTTCCCC--C-SE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhh------------cCCCEEEecCCCCCCCC--C-CE
Confidence 456899999999999999999985 6689999999 877766542 15899999998874443 3 99
Q ss_pred EEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028002 147 IHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 147 V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
|++...++++ ++++.+.|+|||+|++..
T Consensus 265 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 265 IFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp EEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999888744 456889999999999853
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-11 Score=96.05 Aligned_cols=108 Identities=15% Similarity=-0.011 Sum_probs=72.7
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE--eCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH--VGD 133 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~--~~d 133 (215)
..+++. ..+.++.+|||+|||+|..+..+++. ++|+++|+++ +...+++. .........++.++ ++|
T Consensus 64 ~~i~~~--~~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~----~~~~~~~~~~v~~~~~~~D 132 (265)
T 2oxt_A 64 AWMEER--GYVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEV----PRITESYGWNIVKFKSRVD 132 (265)
T ss_dssp HHHHHH--TSCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCC----CCCCCBTTGGGEEEECSCC
T ss_pred HHHHHc--CCCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhh----hhhhhccCCCeEEEecccC
Confidence 444444 23678899999999999999998875 5899999998 43222110 00000000167888 888
Q ss_pred CCCCCCCCCCccEEEEccCCC------------CchHHHHHhcCCCc--EEEEEeCC
Q 028002 134 GRKGWPEFAPYDAIHVGAAAP------------EIPQALIDQLKPGG--RMVIPVGN 176 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~------------~~~~~~~~~Lk~gG--~lv~~~~~ 176 (215)
+.... .++||+|+++.... .+++.+.++|+||| .+++.+..
T Consensus 133 ~~~l~--~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 133 IHTLP--VERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp TTTSC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred HhHCC--CCCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 87643 37899999986511 13456779999999 99986543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-11 Score=96.53 Aligned_cols=100 Identities=15% Similarity=0.020 Sum_probs=69.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE--eCCCCCCCCCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH--VGDGRKGWPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~ 143 (215)
+.++.+|||+|||+|..+..+++. ++|+++|+++ +...+++. .........++.++ ++|+.... .++
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~----~~~~~~~~~~v~~~~~~~D~~~l~--~~~ 148 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEK----PRLVETFGWNLITFKSKVDVTKME--PFQ 148 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCC----CCCCCCTTGGGEEEECSCCGGGCC--CCC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhc----hhhhhhcCCCeEEEeccCcHhhCC--CCC
Confidence 567889999999999999999876 5899999998 43322111 10000000168888 88887643 378
Q ss_pred ccEEEEccCCC------------CchHHHHHhcCCCc--EEEEEeCC
Q 028002 144 YDAIHVGAAAP------------EIPQALIDQLKPGG--RMVIPVGN 176 (215)
Q Consensus 144 ~D~V~~~~~~~------------~~~~~~~~~Lk~gG--~lv~~~~~ 176 (215)
||+|+++.... .+++.+.++||||| .+++.+..
T Consensus 149 fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 149 ADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred cCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 99999986511 13456778999999 99886543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=92.87 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=67.4
Q ss_pred CCCCCEEEEEcC------CccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE-EeCCCCCCC
Q 028002 66 LKPGMHALDIGS------GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV-HVGDGRKGW 138 (215)
Q Consensus 66 ~~~~~~vLdiG~------G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~-~~~d~~~~~ 138 (215)
++++.+|||+|| |+|. ..+++..++.++|+++|+++. . .++++ +++|+.+..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v------~~v~~~i~gD~~~~~ 119 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V------SDADSTLIGDCATVH 119 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B------CSSSEEEESCGGGCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C------CCCEEEEECccccCC
Confidence 678899999999 4466 555666555689999999997 1 35778 999987754
Q ss_pred CCCCCccEEEEccCCC-----------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 139 PEFAPYDAIHVGAAAP-----------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~-----------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.. ++||+|+++...+ .+++.+.++|||||.|++.+..
T Consensus 120 ~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 120 TA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp CS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred cc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 43 6899999975321 2456788999999999996643
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=95.47 Aligned_cols=111 Identities=22% Similarity=0.246 Sum_probs=86.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~ 144 (215)
.++|.+|||+++|.|+-+..++.. +..+.++++|+++..++..++++...+........++.+...|...... ..+.|
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~-~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f 224 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQT-GCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY 224 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHT-TCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred CCCCCEEEEecCCccHHHHHHHHh-cCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence 888999999999999999999987 4557899999999999999999987665322223578888888765321 23689
Q ss_pred cEEEEccCCCC------------------------------chHHHHHhcCCCcEEEEEeCCC
Q 028002 145 DAIHVGAAAPE------------------------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~~~------------------------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|.|+++.++.. ++..+.++|||||+|++++++.
T Consensus 225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 99999887532 1134678899999999998774
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=95.31 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=74.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+..+|||+|||+|..+..+++.. |..+++++|+ +.+++.+++ . .+++++.+|+.+..+ .||
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~------~~v~~~~~d~~~~~p---~~D 248 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG------S------NNLTYVGGDMFTSIP---NAD 248 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------B------TTEEEEECCTTTCCC---CCS
T ss_pred cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhccc------C------CCcEEEeccccCCCC---Ccc
Confidence 4566899999999999999999885 5579999999 888877653 1 469999999876333 399
Q ss_pred EEEEccCCCCc--------hHHHHHhcCC---CcEEEEEe
Q 028002 146 AIHVGAAAPEI--------PQALIDQLKP---GGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~--------~~~~~~~Lk~---gG~lv~~~ 174 (215)
+|++...++++ ++++.+.||| ||++++..
T Consensus 249 ~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 249 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred EEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 99999888654 3567899999 99998864
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.1e-10 Score=89.85 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=79.2
Q ss_pred CCc-ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHhhcccCcc
Q 028002 45 YNA-TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLL 122 (215)
Q Consensus 45 ~~~-~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~ 122 (215)
+|+ ++..+.+...+++.+. ..++.+|||+|||+|.++..+++.... .++|+++|+|+.+++.++++. .
T Consensus 20 ~GQ~fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~------- 89 (279)
T 3uzu_A 20 FGQNFLVDHGVIDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G------- 89 (279)
T ss_dssp CSCCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G-------
T ss_pred CCccccCCHHHHHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C-------
Confidence 355 3567778888888886 778899999999999999999998632 134999999999999999873 1
Q ss_pred cCCCeEEEeCCCCCCCCCC----C--CccEEEEccCCCCchHHHHHhcC
Q 028002 123 KEGSLSVHVGDGRKGWPEF----A--PYDAIHVGAAAPEIPQALIDQLK 165 (215)
Q Consensus 123 ~~~~v~~~~~d~~~~~~~~----~--~~D~V~~~~~~~~~~~~~~~~Lk 165 (215)
.+++++++|+....... . ..+.|+++.++.-.-.-+.++|.
T Consensus 90 --~~v~~i~~D~~~~~~~~~~~~~~~~~~~vv~NlPY~iss~il~~ll~ 136 (279)
T 3uzu_A 90 --ELLELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNISSPLLFHLMS 136 (279)
T ss_dssp --GGEEEEESCGGGCCGGGGSCSSSSCCEEEEEECCHHHHHHHHHHHGG
T ss_pred --CCcEEEECChhcCChhHhcccccCCceEEEEccCccccHHHHHHHHh
Confidence 58999999987654321 0 23467777665332233445554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.1e-09 Score=95.34 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=93.3
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhC----------------------------------
Q 028002 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG---------------------------------- 91 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---------------------------------- 91 (215)
+.....+.+.+.++.... ..++..|||.+||+|.+.+.++....
T Consensus 170 ~~apl~e~LAa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~ 247 (703)
T 3v97_A 170 GIAPIKETLAAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTR 247 (703)
T ss_dssp CCCSSCHHHHHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHH
Confidence 334455566666666654 67788999999999999998876531
Q ss_pred -------CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC--CCCccEEEEccCCCC-------
Q 028002 92 -------PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAPE------- 155 (215)
Q Consensus 92 -------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~V~~~~~~~~------- 155 (215)
+..+++|+|+++.+++.|++++...++. +.+++.++|+.+...+ .+.||+|++++++-.
T Consensus 248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~-----~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~ 322 (703)
T 3v97_A 248 ARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIG-----ELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPA 322 (703)
T ss_dssp HHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCG-----GGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHH
T ss_pred hhhccccCCccEEEEECCHHHHHHHHHHHHHcCCC-----CceEEEECChhhCccccccCCCCEEEeCCCccccccchhH
Confidence 1247999999999999999999988775 4689999998875332 238999999998732
Q ss_pred ---chH---HHHHhcCCCcEEEEEeCCC
Q 028002 156 ---IPQ---ALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 156 ---~~~---~~~~~Lk~gG~lv~~~~~~ 177 (215)
+.. ...+.+.|||.+++.+++.
T Consensus 323 l~~ly~~l~~~lk~~~~g~~~~ilt~~~ 350 (703)
T 3v97_A 323 LIALHSLLGRIMKNQFGGWNLSLFSASP 350 (703)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEESCH
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEeCCH
Confidence 112 2345567899999988763
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-10 Score=91.52 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe
Q 028002 52 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 131 (215)
Q Consensus 52 ~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~ 131 (215)
|.+...+++.+. +.++.+|||+|||+|..+..+++.++ ..+|+++|.|+.+++.|++++...+ .++++++
T Consensus 12 pvLl~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g-------~~v~~v~ 81 (301)
T 1m6y_A 12 PVMVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS-------DRVSLFK 81 (301)
T ss_dssp CTTHHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT-------TTEEEEE
T ss_pred HHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEE
Confidence 335678888886 77889999999999999999999863 5799999999999999999886643 4899999
Q ss_pred CCCCCCC---C--CCCCccEEEEccCCC
Q 028002 132 GDGRKGW---P--EFAPYDAIHVGAAAP 154 (215)
Q Consensus 132 ~d~~~~~---~--~~~~~D~V~~~~~~~ 154 (215)
+|+.... . ...+||.|+++.+..
T Consensus 82 ~d~~~l~~~l~~~g~~~~D~Vl~D~gvS 109 (301)
T 1m6y_A 82 VSYREADFLLKTLGIEKVDGILMDLGVS 109 (301)
T ss_dssp CCGGGHHHHHHHTTCSCEEEEEEECSCC
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEcCccc
Confidence 9976532 1 114799999887653
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-10 Score=98.56 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=89.8
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCC--------------CCeEEEEecChHHHHHHHH
Q 028002 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP--------------QGRAVGVEHIPELVVSSIQ 111 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~--------------~~~v~~~D~s~~~~~~a~~ 111 (215)
|.+.+.+.+...|++.+. ..++ +|+|.+||+|.+...+++.+.. ...++|+|+++.++..|+.
T Consensus 225 G~fyTP~~Vv~lmv~ll~--p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~ 301 (544)
T 3khk_A 225 GQYYTPKSIVTLIVEMLE--PYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAM 301 (544)
T ss_dssp TTTCCCHHHHHHHHHHHC--CCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHH
T ss_pred CeEeCCHHHHHHHHHHHh--cCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHH
Confidence 556666667777777765 4444 9999999999998887654310 2579999999999999999
Q ss_pred HHHhhcccCcccCCCeEEEeCCCCCCC-CCCCCccEEEEccCCCC-----------------------------------
Q 028002 112 NIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYDAIHVGAAAPE----------------------------------- 155 (215)
Q Consensus 112 ~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~V~~~~~~~~----------------------------------- 155 (215)
++...+.. .++.+.++|..... .....||+|++++++..
T Consensus 302 Nl~l~gi~-----~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~ 376 (544)
T 3khk_A 302 NMVIRGID-----FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFA 376 (544)
T ss_dssp HHHHTTCC-----CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHH
T ss_pred HHHHhCCC-----cccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHH
Confidence 88776643 23444677765432 23368999999987642
Q ss_pred chHHHHHhcCCCcEEEEEeCCC
Q 028002 156 IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 156 ~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
++..+.+.|+|||++.+.+|++
T Consensus 377 Fl~~~l~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 377 WMLHMLYHLAPTGSMALLLANG 398 (544)
T ss_dssp HHHHHHHTEEEEEEEEEEEETH
T ss_pred HHHHHHHHhccCceEEEEecch
Confidence 2356789999999998877653
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-09 Score=92.21 Aligned_cols=128 Identities=16% Similarity=0.088 Sum_probs=95.2
Q ss_pred CcccchhHHHHHHHHHHHhc--CCCCCEEEEEcCCccHHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHhhcccCc
Q 028002 46 NATISAPHMHATCLQLLEEN--LKPGMHALDIGSGTGYLTACFALMVG--PQGRAVGVEHIPELVVSSIQNIEKSAAAPL 121 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 121 (215)
|.+.+.+.+...|.+.+... ..++.+|+|.+||+|.+...+++.+. ....++|+|+++.+...|+.++...+.
T Consensus 197 G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi--- 273 (542)
T 3lkd_A 197 GEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGV--- 273 (542)
T ss_dssp SSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTC---
T ss_pred CeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCC---
Confidence 55666666667777766522 23678999999999999998888752 236899999999999999998876553
Q ss_pred ccCCCeEEEeCCCCCC-CC--CCCCccEEEEccCCCC-----------------------------chHHHHHhcC-CCc
Q 028002 122 LKEGSLSVHVGDGRKG-WP--EFAPYDAIHVGAAAPE-----------------------------IPQALIDQLK-PGG 168 (215)
Q Consensus 122 ~~~~~v~~~~~d~~~~-~~--~~~~~D~V~~~~~~~~-----------------------------~~~~~~~~Lk-~gG 168 (215)
...++.+.++|.... ++ ....||+|++++++.. ++..+.+.|+ +||
T Consensus 274 -~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gG 352 (542)
T 3lkd_A 274 -PIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNG 352 (542)
T ss_dssp -CGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTC
T ss_pred -CcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCce
Confidence 224678999997754 22 2368999999987510 2345778999 999
Q ss_pred EEEEEeCCC
Q 028002 169 RMVIPVGNI 177 (215)
Q Consensus 169 ~lv~~~~~~ 177 (215)
++.+.+|++
T Consensus 353 r~a~VlP~g 361 (542)
T 3lkd_A 353 VMAIVLPHG 361 (542)
T ss_dssp EEEEEEETH
T ss_pred eEEEEecch
Confidence 998877764
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.7e-10 Score=87.48 Aligned_cols=107 Identities=14% Similarity=0.057 Sum_probs=78.6
Q ss_pred CCc-ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCccc
Q 028002 45 YNA-TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 123 (215)
Q Consensus 45 ~~~-~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~ 123 (215)
+|+ ++..+.+...+++.+. ..++.+|||+|||+|.++..+++. + ..+++++|+|+.+++.++++ .
T Consensus 9 ~GQnfl~d~~i~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~-~--------- 74 (249)
T 3ftd_A 9 FGQHLLVSEGVLKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSI-G--------- 74 (249)
T ss_dssp CCSSCEECHHHHHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTS-C---------
T ss_pred ccccccCCHHHHHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhc-c---------
Confidence 355 3456778888888876 778899999999999999999886 3 27999999999999999765 1
Q ss_pred CCCeEEEeCCCCCCCCCC-CCccEEEEccCCCCchHHHHHhcC
Q 028002 124 EGSLSVHVGDGRKGWPEF-APYDAIHVGAAAPEIPQALIDQLK 165 (215)
Q Consensus 124 ~~~v~~~~~d~~~~~~~~-~~~D~V~~~~~~~~~~~~~~~~Lk 165 (215)
..+++++++|+....... .....|+++.+..-....+.++|.
T Consensus 75 ~~~v~~i~~D~~~~~~~~~~~~~~vv~NlPy~i~~~il~~ll~ 117 (249)
T 3ftd_A 75 DERLEVINEDASKFPFCSLGKELKVVGNLPYNVASLIIENTVY 117 (249)
T ss_dssp CTTEEEECSCTTTCCGGGSCSSEEEEEECCTTTHHHHHHHHHH
T ss_pred CCCeEEEEcchhhCChhHccCCcEEEEECchhccHHHHHHHHh
Confidence 158999999998754321 112377777777543344444443
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.7e-09 Score=84.56 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=84.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
+...+||-||.|.|..+..+++.. +..+++.+|+++.+++.+++.+..... ..+..++++++.+|+..... ..++||
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~-~~~~dpRv~v~~~Dg~~~l~~~~~~yD 159 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNA-GSYDDPRFKLVIDDGVNFVNQTSQTFD 159 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccc-cccCCCcEEEEechHHHHHhhccccCC
Confidence 345799999999999999999873 447999999999999999998754221 11344799999999987654 336899
Q ss_pred EEEEccCC----------CCchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~----------~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+.+..- ..+.+.+.+.|+|||+++.-.++
T Consensus 160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~s 200 (294)
T 3o4f_A 160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGV 200 (294)
T ss_dssp EEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCC
Confidence 99988643 23557899999999999986543
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-10 Score=91.31 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=65.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecCh-------HHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIP-------ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 138 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~-------~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 138 (215)
..++.+|||+|||+|..+..+++. + .+|+++|+++ .+++.+++++..++.. .+++++++|..+..
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~-g--~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~-----~ri~~~~~d~~~~l 152 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL-G--LTVTAFEQHPAVACLLSDGIRRALLNPETQDTA-----ARINLHFGNAAEQM 152 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT-T--CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH-----TTEEEEESCHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh-C--CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc-----cCeEEEECCHHHHH
Confidence 456789999999999999999987 3 6899999999 9999998887766543 45999999987643
Q ss_pred C--CC--CCccEEEEccCCC
Q 028002 139 P--EF--APYDAIHVGAAAP 154 (215)
Q Consensus 139 ~--~~--~~~D~V~~~~~~~ 154 (215)
. .. ++||+|+++++++
T Consensus 153 ~~~~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 153 PALVKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHHHHHHCCCSEEEECCCC-
T ss_pred HhhhccCCCccEEEECCCCC
Confidence 2 11 5799999998664
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-10 Score=85.99 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=66.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC---CCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~ 142 (215)
++++.+|||+|||. +++|+|+.|++.|++++. .++++..+|+..... ..+
T Consensus 10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~----------~~~~~~~~d~~~~~~~~~~~~ 62 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG----------NEGRVSVENIKQLLQSAHKES 62 (176)
T ss_dssp CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT----------TTSEEEEEEGGGGGGGCCCSS
T ss_pred CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc----------cCcEEEEechhcCccccCCCC
Confidence 78899999999985 128999999999988753 247888888876543 447
Q ss_pred CccEEEEccCCCCc-------hHHHHHhcCCCcEEEEEeC
Q 028002 143 PYDAIHVGAAAPEI-------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 143 ~~D~V~~~~~~~~~-------~~~~~~~Lk~gG~lv~~~~ 175 (215)
+||+|++...++++ ++++.++|||||++++..+
T Consensus 63 ~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 63 SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp CEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 89999998877765 4688999999999999543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.4e-10 Score=91.60 Aligned_cols=91 Identities=20% Similarity=0.250 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ ..+++++.+|+....+ .||+
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~d~~~~~~---~~D~ 254 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG------------NENLNFVGGDMFKSIP---SADA 254 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC------------CSSEEEEECCTTTCCC---CCSE
T ss_pred cCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc------------CCCcEEEeCccCCCCC---CceE
Confidence 456899999999999999999985 6678999999 677765542 1469999999877322 4999
Q ss_pred EEEccCCCCc--------hHHHHHhcCC---CcEEEEEe
Q 028002 147 IHVGAAAPEI--------PQALIDQLKP---GGRMVIPV 174 (215)
Q Consensus 147 V~~~~~~~~~--------~~~~~~~Lk~---gG~lv~~~ 174 (215)
|++...++++ ++++.+.|+| ||++++..
T Consensus 255 v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 255 VLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred EEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 9999887654 3567899999 99998853
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.1e-10 Score=87.93 Aligned_cols=93 Identities=11% Similarity=-0.019 Sum_probs=70.1
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028002 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
++..+.+...+++.+. ..++.+|||+|||+|.++. +. . +...+|+++|+++.+++.+++++... .++
T Consensus 3 fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~-~~~~~v~avEid~~~~~~a~~~~~~~--------~~v 69 (252)
T 1qyr_A 3 FLNDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-G-ERLDQLTVIELDRDLAARLQTHPFLG--------PKL 69 (252)
T ss_dssp EECCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-H-TTCSCEEEECCCHHHHHHHHTCTTTG--------GGE
T ss_pred CcCCHHHHHHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-h-CCCCeEEEEECCHHHHHHHHHHhccC--------Cce
Confidence 3456777888888886 7788999999999999999 64 4 32233999999999999998765431 479
Q ss_pred EEEeCCCCCCCCCC-----CCccEEEEccCC
Q 028002 128 SVHVGDGRKGWPEF-----APYDAIHVGAAA 153 (215)
Q Consensus 128 ~~~~~d~~~~~~~~-----~~~D~V~~~~~~ 153 (215)
+++++|+....... +..|.|+++.+.
T Consensus 70 ~~i~~D~~~~~~~~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 70 TIYQQDAMTFNFGELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp EEECSCGGGCCHHHHHHHHTSCEEEEEECCT
T ss_pred EEEECchhhCCHHHhhcccCCceEEEECCCC
Confidence 99999987743210 234688888775
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-09 Score=93.83 Aligned_cols=130 Identities=8% Similarity=0.007 Sum_probs=85.4
Q ss_pred CcccchhHHHHHHHHH----HHhcCCCCCEEEEEcCCccHHHHHHHHHhCC--CCeEEEEecChHHHHHHHHHHH--hhc
Q 028002 46 NATISAPHMHATCLQL----LEENLKPGMHALDIGSGTGYLTACFALMVGP--QGRAVGVEHIPELVVSSIQNIE--KSA 117 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~----l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~--~~~v~~~D~s~~~~~~a~~~~~--~~~ 117 (215)
|.+.+.+.+...++.. +.....++.+|||.|||+|.+...+++.++. ..+++|+|+++.+++.|+.+.. .+.
T Consensus 295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~ 374 (878)
T 3s1s_A 295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ 374 (878)
T ss_dssp BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence 5555666666666655 2212345789999999999999999987631 2579999999999999943332 211
Q ss_pred ccCcccCCCeEEEeCCCCCCC-CCCCCccEEEEccCCCC-----------------------------------chHHHH
Q 028002 118 AAPLLKEGSLSVHVGDGRKGW-PEFAPYDAIHVGAAAPE-----------------------------------IPQALI 161 (215)
Q Consensus 118 ~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~V~~~~~~~~-----------------------------------~~~~~~ 161 (215)
... +.....+...|..... .....||+|++++++-. ++..+.
T Consensus 375 Llh--Gi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al 452 (878)
T 3s1s_A 375 LVS--SNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVT 452 (878)
T ss_dssp TCB--TTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHH
T ss_pred hhc--CCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHH
Confidence 111 1122345555554421 12368999999998721 123467
Q ss_pred HhcCCCcEEEEEeCCC
Q 028002 162 DQLKPGGRMVIPVGNI 177 (215)
Q Consensus 162 ~~Lk~gG~lv~~~~~~ 177 (215)
++|++||++.+.+|+.
T Consensus 453 ~lLKpGGrLAfIlP~s 468 (878)
T 3s1s_A 453 ELVQDGTVISAIMPKQ 468 (878)
T ss_dssp HHSCTTCEEEEEEETH
T ss_pred HhcCCCcEEEEEEChH
Confidence 8899999999988764
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.98 E-value=8e-10 Score=91.63 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=66.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh--cccCcccCCCeEEEeCCCCCCCCC--C
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS--AAAPLLKEGSLSVHVGDGRKGWPE--F 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~v~~~~~d~~~~~~~--~ 141 (215)
+.++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.|++++... +. .+++++++|+.+.... .
T Consensus 91 l~~g~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~~gl------~~i~~i~~Da~~~L~~~~~ 161 (410)
T 3ll7_A 91 IREGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLLNEG------KDVNILTGDFKEYLPLIKT 161 (410)
T ss_dssp SCTTCEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHSCTT------CEEEEEESCGGGSHHHHHH
T ss_pred cCCCCEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhccCC------CcEEEEECcHHHhhhhccC
Confidence 4458999999999999999998763 79999999999999999999876 43 5899999998875322 2
Q ss_pred CCccEEEEccCC
Q 028002 142 APYDAIHVGAAA 153 (215)
Q Consensus 142 ~~~D~V~~~~~~ 153 (215)
++||+|+++++.
T Consensus 162 ~~fDvV~lDPPr 173 (410)
T 3ll7_A 162 FHPDYIYVDPAR 173 (410)
T ss_dssp HCCSEEEECCEE
T ss_pred CCceEEEECCCC
Confidence 589999998754
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.5e-09 Score=82.17 Aligned_cols=87 Identities=14% Similarity=0.128 Sum_probs=64.2
Q ss_pred CCCC--CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCccc--C-CCeEEEeCCCCCCCCC
Q 028002 66 LKPG--MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK--E-GSLSVHVGDGRKGWPE 140 (215)
Q Consensus 66 ~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~--~-~~v~~~~~d~~~~~~~ 140 (215)
+.++ .+|||+|||+|..+..+++. + .+|+++|.++.+.+.+++++.......... . .+++++++|..+....
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~-g--~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~ 160 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV-G--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD 160 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH-T--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh
Confidence 4566 89999999999999999998 3 689999999998888877765432100000 0 4789999998654321
Q ss_pred -CCCccEEEEccCCCC
Q 028002 141 -FAPYDAIHVGAAAPE 155 (215)
Q Consensus 141 -~~~~D~V~~~~~~~~ 155 (215)
.+.||+|+++++++.
T Consensus 161 ~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 161 ITPRPQVVYLDPMFPH 176 (258)
T ss_dssp CSSCCSEEEECCCCCC
T ss_pred CcccCCEEEEcCCCCC
Confidence 147999999987754
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-08 Score=89.03 Aligned_cols=95 Identities=20% Similarity=0.168 Sum_probs=69.5
Q ss_pred CEEEEEcCCccHHHHHHHHH---hCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 70 MHALDIGSGTGYLTACFALM---VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~---~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
..|+|+|||+|.++...++. .+-..+|+++|.++ +...+++..+.++.. ++|+++++++.+...+ +++|+
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~-----dkVtVI~gd~eev~LP-EKVDI 431 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWG-----SQVTVVSSDMREWVAP-EKADI 431 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTG-----GGEEEEESCTTTCCCS-SCEEE
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCC-----CeEEEEeCcceeccCC-cccCE
Confidence 57999999999985544443 22223799999997 566778888877765 7899999999886555 79999
Q ss_pred EEEccCC--------CCchHHHHHhcCCCcEEE
Q 028002 147 IHVGAAA--------PEIPQALIDQLKPGGRMV 171 (215)
Q Consensus 147 V~~~~~~--------~~~~~~~~~~Lk~gG~lv 171 (215)
|++--.- ..++....+.|||||.++
T Consensus 432 IVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 432 IVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp EECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 9865321 123345568999999863
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.6e-08 Score=83.10 Aligned_cols=124 Identities=15% Similarity=0.078 Sum_probs=89.7
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCC------------CCeEEEEecChHHHHHHHHHH
Q 028002 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP------------QGRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~------------~~~v~~~D~s~~~~~~a~~~~ 113 (215)
|++.+.+.+...|++.+. ..++.+|+|-+||+|.+...+.+.+.. ...++|+|+++.+...|+-++
T Consensus 197 GqfyTP~~Vv~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl 274 (530)
T 3ufb_A 197 GEFYTPRPVVRFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNL 274 (530)
T ss_dssp CCCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHH
T ss_pred ceECCcHHHHHHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHH
Confidence 666666677777777776 677889999999999998877665421 146999999999999999888
Q ss_pred HhhcccCcccCCCeEEEeCCCCCCCC----CCCCccEEEEccCCCC----------------------chHHHHHhcC--
Q 028002 114 EKSAAAPLLKEGSLSVHVGDGRKGWP----EFAPYDAIHVGAAAPE----------------------IPQALIDQLK-- 165 (215)
Q Consensus 114 ~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~~D~V~~~~~~~~----------------------~~~~~~~~Lk-- 165 (215)
--++. ....+..+|...... ....||+|++++++.. ++..+.+.||
T Consensus 275 ~lhg~------~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~ 348 (530)
T 3ufb_A 275 LLHGL------EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRP 348 (530)
T ss_dssp HHHTC------SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCT
T ss_pred HhcCC------ccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhh
Confidence 76654 345667777654321 2247999999998731 1133456665
Q ss_pred -----CCcEEEEEeCCC
Q 028002 166 -----PGGRMVIPVGNI 177 (215)
Q Consensus 166 -----~gG~lv~~~~~~ 177 (215)
+||++.+.+|++
T Consensus 349 ~~~l~~gGr~avVlP~g 365 (530)
T 3ufb_A 349 GHGSDNGGRAAVVVPNG 365 (530)
T ss_dssp TSSSSSCCEEEEEEEHH
T ss_pred hhccCCCceEEEEecch
Confidence 799999877653
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.1e-08 Score=77.58 Aligned_cols=102 Identities=8% Similarity=0.052 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhC----CCCeEEEEecChH--------------------------HHHHHHHHHHhh
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVG----PQGRAVGVEHIPE--------------------------LVVSSIQNIEKS 116 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~----~~~~v~~~D~s~~--------------------------~~~~a~~~~~~~ 116 (215)
.....|||+|+..|+.+..++..+. ++++++++|..+. ..+.+++++...
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 4457999999999999998877653 3589999996421 466788888876
Q ss_pred cccCcccCCCeEEEeCCCCCCCCC--CCCccEEEEccCCC----CchHHHHHhcCCCcEEEE
Q 028002 117 AAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAP----EIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 117 ~~~~~~~~~~v~~~~~d~~~~~~~--~~~~D~V~~~~~~~----~~~~~~~~~Lk~gG~lv~ 172 (215)
+. ..++++++.+++.+..+. .++||+|+.+.... ..++.+...|+|||++++
T Consensus 185 gl----~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~ 242 (282)
T 2wk1_A 185 DL----LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIV 242 (282)
T ss_dssp TC----CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CC----CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEE
Confidence 64 126899999998765442 26899999998762 234677889999999988
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=3e-08 Score=77.48 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHh------CCC-----CeEEEEecCh---HHH-----------HHHHHHHHhhccc--
Q 028002 67 KPGMHALDIGSGTGYLTACFALMV------GPQ-----GRAVGVEHIP---ELV-----------VSSIQNIEKSAAA-- 119 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~------~~~-----~~v~~~D~s~---~~~-----------~~a~~~~~~~~~~-- 119 (215)
++..+|||+|+|+|..+..+++.. .|+ .+++++|..+ ..+ +.+++.+..+...
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 345799999999999998877654 453 4899999887 333 3555555542110
Q ss_pred ------CcccCCCeEEEeCCCCCCCCCC-----CCccEEEEccCCC---------CchHHHHHhcCCCcEEEEEe
Q 028002 120 ------PLLKEGSLSVHVGDGRKGWPEF-----APYDAIHVGAAAP---------EIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 120 ------~~~~~~~v~~~~~d~~~~~~~~-----~~~D~V~~~~~~~---------~~~~~~~~~Lk~gG~lv~~~ 174 (215)
-.-+..++++..+|+.+.++.. ..||+|+.++-.+ .+++.+.++|+|||+|+.-+
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys 213 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT 213 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe
Confidence 0001246789999987643321 2799999986321 25568999999999998633
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.59 E-value=9.8e-08 Score=83.34 Aligned_cols=97 Identities=16% Similarity=0.054 Sum_probs=66.4
Q ss_pred CCEEEEEcCCccHHHHHHHHH---hC---------CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 69 GMHALDIGSGTGYLTACFALM---VG---------PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~---~~---------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
+..|||+|||+|.++...++. .+ ...+|+++|.++.+....+.... ++.. +.++++.++..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~-----d~VtVI~gd~ee 483 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWK-----RRVTIIESDMRS 483 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTT-----TCSEEEESCGGG
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCC-----CeEEEEeCchhh
Confidence 458999999999997543222 22 12499999999977765554443 4443 679999999987
Q ss_pred CCCC-----CCCccEEEEccCC----C----CchHHHHHhcCCCcEEE
Q 028002 137 GWPE-----FAPYDAIHVGAAA----P----EIPQALIDQLKPGGRMV 171 (215)
Q Consensus 137 ~~~~-----~~~~D~V~~~~~~----~----~~~~~~~~~Lk~gG~lv 171 (215)
...+ .+++|+|++--.- . ..++.+.+.|||||.++
T Consensus 484 v~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 484 LPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 5431 3789999876532 1 23344468899999753
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-07 Score=73.88 Aligned_cols=85 Identities=24% Similarity=0.285 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
+..++++.+. ++++..++|.+||.|..+..+++. + ++|+|+|.++.+++.+++ +.. .++.+++++
T Consensus 10 Ll~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~-~--g~VigiD~Dp~Ai~~A~~-L~~---------~rv~lv~~~ 74 (285)
T 1wg8_A 10 LYQEALDLLA--VRPGGVYVDATLGGAGHARGILER-G--GRVIGLDQDPEAVARAKG-LHL---------PGLTVVQGN 74 (285)
T ss_dssp THHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHH-TCC---------TTEEEEESC
T ss_pred HHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC-C--CEEEEEeCCHHHHHHHHh-hcc---------CCEEEEECC
Confidence 4788889887 788999999999999999999987 2 799999999999999987 532 489999999
Q ss_pred CCCCC---C--CCCCccEEEEccCC
Q 028002 134 GRKGW---P--EFAPYDAIHVGAAA 153 (215)
Q Consensus 134 ~~~~~---~--~~~~~D~V~~~~~~ 153 (215)
+.... . ..+++|.|+++.+.
T Consensus 75 f~~l~~~L~~~g~~~vDgIL~DLGv 99 (285)
T 1wg8_A 75 FRHLKRHLAALGVERVDGILADLGV 99 (285)
T ss_dssp GGGHHHHHHHTTCSCEEEEEEECSC
T ss_pred cchHHHHHHHcCCCCcCEEEeCCcc
Confidence 87531 1 12579999987654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-07 Score=73.04 Aligned_cols=111 Identities=12% Similarity=-0.000 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
+.++.+.. .++++.+|||+|||+|..+..++...+ ...+.++|+...+...... . .... .++.....++
T Consensus 63 L~ei~ek~--~l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~-----~--~~~g-~~ii~~~~~~ 131 (277)
T 3evf_A 63 LRWFHERG--YVKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMN-----V--QSLG-WNIITFKDKT 131 (277)
T ss_dssp HHHHHHTT--SSCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCC-----C--CBTT-GGGEEEECSC
T ss_pred HHHHHHhC--CCCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCcccccc-----c--CcCC-CCeEEEeccc
Confidence 44445552 378888999999999999998887632 2578888877442100000 0 0000 1444455554
Q ss_pred CCCCCCCCCccEEEEccCCC------------CchHHHHHhcCCC-cEEEEEeCC
Q 028002 135 RKGWPEFAPYDAIHVGAAAP------------EIPQALIDQLKPG-GRMVIPVGN 176 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~------------~~~~~~~~~Lk~g-G~lv~~~~~ 176 (215)
.......++||+|+++.... .+++.+.++|+|| |.+++-+..
T Consensus 132 dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 132 DIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred eehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 33223337899999987554 1224456899999 999997765
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.1e-07 Score=64.10 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCcc-HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTG-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
...+.+.+.....++.+|||+|||+| ..+..+++..| ..|+++|+++..++ +++.|
T Consensus 22 ~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g--~~V~atDInp~Av~---------------------~v~dD 78 (153)
T 2k4m_A 22 WNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSK--VDLVLTDIKPSHGG---------------------IVRDD 78 (153)
T ss_dssp HHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSC--CEEEEECSSCSSTT---------------------EECCC
T ss_pred HHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCC--CeEEEEECCccccc---------------------eEEcc
Confidence 44455555555667789999999999 69999987434 68999999886433 67777
Q ss_pred CCCCCCCC-CCccEEEEccCCCCchHHHHHhcCC-CcEEEEE
Q 028002 134 GRKGWPEF-APYDAIHVGAAAPEIPQALIDQLKP-GGRMVIP 173 (215)
Q Consensus 134 ~~~~~~~~-~~~D~V~~~~~~~~~~~~~~~~Lk~-gG~lv~~ 173 (215)
+.+..... ..||+|++..+..++...+.++-+. |.-+++.
T Consensus 79 iF~P~~~~Y~~~DLIYsirPP~El~~~i~~lA~~v~adliI~ 120 (153)
T 2k4m_A 79 ITSPRMEIYRGAALIYSIRPPAEIHSSLMRVADAVGARLIIK 120 (153)
T ss_dssp SSSCCHHHHTTEEEEEEESCCTTTHHHHHHHHHHHTCEEEEE
T ss_pred CCCCcccccCCcCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 77643321 4899999888888888777766544 5555553
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=8.8e-08 Score=78.26 Aligned_cols=106 Identities=19% Similarity=0.151 Sum_probs=76.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcc--cCcccCCCeEEEeCCCCCCCC----C
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA--APLLKEGSLSVHVGDGRKGWP----E 140 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~v~~~~~d~~~~~~----~ 140 (215)
.+..+||-+|.|.|.....+++. .+ .+++.+|+++.+++.+++.+..... ......++++++.+|+..... .
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~ 281 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-KP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE 281 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-CC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-CC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence 34579999999999999999986 45 7899999999999999987643211 000112568999999865432 2
Q ss_pred CCCccEEEEccCC----------------CCchHHHHHhcCCCcEEEEEe
Q 028002 141 FAPYDAIHVGAAA----------------PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 141 ~~~~D~V~~~~~~----------------~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
.+.||+|+.+... ..+.+.+.+.|+|||+++.-.
T Consensus 282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3579999988421 112356789999999998754
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.6e-07 Score=72.16 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
++.++++.|. ++++..++|..||.|..+..+++.++++++|+|+|.++.+++.++ ++. ..++.+++++
T Consensus 45 Ll~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~---------~~Rv~lv~~n 112 (347)
T 3tka_A 45 LLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID---------DPRFSIIHGP 112 (347)
T ss_dssp TTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC---------CTTEEEEESC
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc---------CCcEEEEeCC
Confidence 5678888887 788999999999999999999998888899999999999999884 331 1689999998
Q ss_pred CCCCC---CC---CCCccEEEEccC
Q 028002 134 GRKGW---PE---FAPYDAIHVGAA 152 (215)
Q Consensus 134 ~~~~~---~~---~~~~D~V~~~~~ 152 (215)
..... .. .+++|.|+.+..
T Consensus 113 F~~l~~~L~~~g~~~~vDgILfDLG 137 (347)
T 3tka_A 113 FSALGEYVAERDLIGKIDGILLDLG 137 (347)
T ss_dssp GGGHHHHHHHTTCTTCEEEEEEECS
T ss_pred HHHHHHHHHhcCCCCcccEEEECCc
Confidence 76531 11 136999987764
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.6e-07 Score=71.36 Aligned_cols=111 Identities=15% Similarity=0.037 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
+.++.+.. .+.++.+|||+|||+|..+..++...+ ...++++|+...+...+... .. .. .++.....+.
T Consensus 79 L~ei~eK~--~Lk~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~~-~~------~g-~~ii~~~~~~ 147 (282)
T 3gcz_A 79 LRWMEERG--YVKPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIMR-TT------LG-WNLIRFKDKT 147 (282)
T ss_dssp HHHHHHTT--SCCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCC-CB------TT-GGGEEEECSC
T ss_pred HHHHHHhc--CCCCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCcccccccc-cc------CC-CceEEeeCCc
Confidence 44555554 378889999999999999999887643 36789999876532211100 00 01 1333333322
Q ss_pred CCCCCCCCCccEEEEccCCC------------CchHHHHHhcCCC--cEEEEEeCC
Q 028002 135 RKGWPEFAPYDAIHVGAAAP------------EIPQALIDQLKPG--GRMVIPVGN 176 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~------------~~~~~~~~~Lk~g--G~lv~~~~~ 176 (215)
........++|+|+++.... .+++-+.++|+|| |.+++-+..
T Consensus 148 dv~~l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 148 DVFNMEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CGGGSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred chhhcCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 21112237899999997654 1223456889999 999997655
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=8.3e-06 Score=66.43 Aligned_cols=74 Identities=20% Similarity=0.164 Sum_probs=58.7
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.+++|+++||+||++|+.+..++++. ++|+++|..+-. . .+.. .++++++++|.....+...+|
T Consensus 208 ~l~~G~~vlDLGAaPGGWT~~l~~rg---~~V~aVD~~~l~-~----~l~~--------~~~V~~~~~d~~~~~~~~~~~ 271 (375)
T 4auk_A 208 RLANGMWAVDLGACPGGWTYQLVKRN---MWVYSVDNGPMA-Q----SLMD--------TGQVTWLREDGFKFRPTRSNI 271 (375)
T ss_dssp HSCTTCEEEEETCTTCHHHHHHHHTT---CEEEEECSSCCC-H----HHHT--------TTCEEEECSCTTTCCCCSSCE
T ss_pred cCCCCCEEEEeCcCCCHHHHHHHHCC---CEEEEEEhhhcC-h----hhcc--------CCCeEEEeCccccccCCCCCc
Confidence 36889999999999999999999884 799999976421 1 1111 268999999998877765789
Q ss_pred cEEEEccCCC
Q 028002 145 DAIHVGAAAP 154 (215)
Q Consensus 145 D~V~~~~~~~ 154 (215)
|+|+|+....
T Consensus 272 D~vvsDm~~~ 281 (375)
T 4auk_A 272 SWMVCDMVEK 281 (375)
T ss_dssp EEEEECCSSC
T ss_pred CEEEEcCCCC
Confidence 9999998764
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.6e-06 Score=67.49 Aligned_cols=108 Identities=15% Similarity=0.039 Sum_probs=67.5
Q ss_pred CCEEEEEcCCccHHHHHHHH--------Hh------CCCCeEEEEecChHHHHHHHHHHHhhccc---------CcccCC
Q 028002 69 GMHALDIGSGTGYLTACFAL--------MV------GPQGRAVGVEHIPELVVSSIQNIEKSAAA---------PLLKEG 125 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~--------~~------~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---------~~~~~~ 125 (215)
..+|+|+|||+|..+..++. .. .|.-+|..-|+........-+.+...... ......
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 47899999999998887632 21 14468888888777655554444321100 000000
Q ss_pred CeEEEeCCCCCCCCCCCCccEEEEccCCCCch--------------------------------------------HHHH
Q 028002 126 SLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIP--------------------------------------------QALI 161 (215)
Q Consensus 126 ~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~--------------------------------------------~~~~ 161 (215)
-+.-+.+.+.....+.+++|+|+++..++++. +...
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223344444444558999999999887643 2337
Q ss_pred HhcCCCcEEEEEeCC
Q 028002 162 DQLKPGGRMVIPVGN 176 (215)
Q Consensus 162 ~~Lk~gG~lv~~~~~ 176 (215)
+.|+|||++++++..
T Consensus 213 ~eL~pGG~mvl~~~g 227 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLG 227 (374)
T ss_dssp HHEEEEEEEEEEEEE
T ss_pred HHhCCCCEEEEEEec
Confidence 899999999998753
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=6.8e-06 Score=67.53 Aligned_cols=82 Identities=10% Similarity=-0.098 Sum_probs=47.7
Q ss_pred CCEEEEEcCCccHHHHHHHHH-------------h---CCCCeEEEEecChHHHHHHHHH-------HH-hhcccCcccC
Q 028002 69 GMHALDIGSGTGYLTACFALM-------------V---GPQGRAVGVEHIPELVVSSIQN-------IE-KSAAAPLLKE 124 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~-------------~---~~~~~v~~~D~s~~~~~~a~~~-------~~-~~~~~~~~~~ 124 (215)
..+|+|+||++|..+..+... . .|.-+|+..|+...-....-+. +. ..+..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~----- 127 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRK----- 127 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCC-----
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCC-----
Confidence 478999999999999877665 1 1345788888763221111111 11 11110
Q ss_pred CCeEEEeCCC---CCCCCCCCCccEEEEccCCCC
Q 028002 125 GSLSVHVGDG---RKGWPEFAPYDAIHVGAAAPE 155 (215)
Q Consensus 125 ~~v~~~~~d~---~~~~~~~~~~D~V~~~~~~~~ 155 (215)
.+.-++.+.. ...+.+.+++|+|+++..+++
T Consensus 128 ~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHW 161 (384)
T 2efj_A 128 IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHW 161 (384)
T ss_dssp TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTB
T ss_pred CCceEEEecchhhhhccCCCCceEEEEecceeee
Confidence 1234444433 333445589999999998866
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.14 E-value=7.9e-06 Score=65.09 Aligned_cols=57 Identities=25% Similarity=0.302 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 116 (215)
+...++... ..++..|||++||+|..+..+++. | .+++|+|+++.+++.|++++...
T Consensus 224 l~~~~i~~~---~~~~~~vlD~f~GsGt~~~~a~~~-g--~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 224 LAERLVRMF---SFVGDVVLDPFAGTGTTLIAAARW-G--RRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp HHHHHHHHH---CCTTCEEEETTCTTTHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHc-C--CeEEEEeCCHHHHHHHHHHHHHh
Confidence 455555554 467899999999999999998876 3 79999999999999999998764
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.3e-06 Score=69.75 Aligned_cols=103 Identities=13% Similarity=0.089 Sum_probs=68.4
Q ss_pred CCEEEEEcCCccHHHHHHHHH---------------hCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe--
Q 028002 69 GMHALDIGSGTGYLTACFALM---------------VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-- 131 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~---------------~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-- 131 (215)
..+|+|+||++|..+..+... -.|.-+|+..|...+.....-+.+...... .+..+..
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~-----~~~~f~~gv 126 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV-----DGVCFINGV 126 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSC-----TTCEEEEEE
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhccc-----CCCEEEEec
Confidence 367999999999877644332 124468999999888877776655432100 1223333
Q ss_pred -CCCCCCCCCCCCccEEEEccCCCCch---------------------------------------HHHHHhcCCCcEEE
Q 028002 132 -GDGRKGWPEFAPYDAIHVGAAAPEIP---------------------------------------QALIDQLKPGGRMV 171 (215)
Q Consensus 132 -~d~~~~~~~~~~~D~V~~~~~~~~~~---------------------------------------~~~~~~Lk~gG~lv 171 (215)
+.+...+.+.+++|+|+++..++++. +.-.+.|+|||+++
T Consensus 127 pgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mv 206 (359)
T 1m6e_X 127 PGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMV 206 (359)
T ss_dssp ESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEE
T ss_pred chhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 44444455558999999998876532 22378999999999
Q ss_pred EEeCC
Q 028002 172 IPVGN 176 (215)
Q Consensus 172 ~~~~~ 176 (215)
+++..
T Consensus 207 l~~~g 211 (359)
T 1m6e_X 207 LTILG 211 (359)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 98743
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2e-05 Score=61.91 Aligned_cols=111 Identities=13% Similarity=-0.028 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
+.++.+. . .+.++.+|||+||++|..+..+++..+. ..|+++|+......... ...... .++.......
T Consensus 70 L~ei~ek-~-l~~~g~~vlDLGaaPGgWsqva~~~~gv-~sV~Gvdlg~~~~~~P~-------~~~~~~-~~iv~~~~~~ 138 (300)
T 3eld_A 70 IRWLHER-G-YLRITGRVLDLGCGRGGWSYYAAAQKEV-MSVKGYTLGIEGHEKPI-------HMQTLG-WNIVKFKDKS 138 (300)
T ss_dssp HHHHHHH-T-SCCCCEEEEEETCTTCHHHHHHHTSTTE-EEEEEECCCCTTSCCCC-------CCCBTT-GGGEEEECSC
T ss_pred HHHHHHh-C-CCCCCCEEEEcCCCCCHHHHHHHHhcCC-ceeeeEEeccccccccc-------cccccC-CceEEeecCc
Confidence 4455555 3 4678899999999999999999976432 57889998653211000 000001 1222222222
Q ss_pred CCCCCCCCCccEEEEccCCC------------CchHHHHHhcCCC-cEEEEEeCC
Q 028002 135 RKGWPEFAPYDAIHVGAAAP------------EIPQALIDQLKPG-GRMVIPVGN 176 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~------------~~~~~~~~~Lk~g-G~lv~~~~~ 176 (215)
.......+++|+|+++.... .+++-+.++|+|| |.|++-+..
T Consensus 139 di~~l~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 139 NVFTMPTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CTTTSCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred eeeecCCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 21112236899999987654 1223456889999 999997655
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.4e-05 Score=65.09 Aligned_cols=81 Identities=19% Similarity=0.173 Sum_probs=65.3
Q ss_pred cCCc-ccchhHHHHHHHHHHHhcCC------CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh
Q 028002 44 GYNA-TISAPHMHATCLQLLEENLK------PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116 (215)
Q Consensus 44 ~~~~-~~~~~~~~~~~l~~l~~~~~------~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 116 (215)
.+|+ ++..+.+...+++.+. +. ++..|||||+|.|.+|..+++...+ .+++++|+++..+...++.+ .
T Consensus 29 ~lGQnFL~d~~i~~~Iv~~~~--l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~vvavE~D~~l~~~L~~~~-~- 103 (353)
T 1i4w_A 29 FYGFKYLWNPTVYNKIFDKLD--LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKF-E- 103 (353)
T ss_dssp GGGCCCBCCHHHHHHHHHHHC--GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHT-T-
T ss_pred CCCcCccCCHHHHHHHHHhcc--CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCC-CEEEEEecCHHHHHHHHHhc-c-
Confidence 3455 4678889999999986 43 3689999999999999999987433 68999999999988887765 2
Q ss_pred cccCcccCCCeEEEeCCCCC
Q 028002 117 AAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 117 ~~~~~~~~~~v~~~~~d~~~ 136 (215)
.++++++.+|+..
T Consensus 104 -------~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 104 -------GSPLQILKRDPYD 116 (353)
T ss_dssp -------TSSCEEECSCTTC
T ss_pred -------CCCEEEEECCccc
Confidence 1589999999854
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3.5e-06 Score=64.87 Aligned_cols=107 Identities=17% Similarity=0.080 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHH--hCC-CCeEEEEecChHHHHHHHHHHHhhcccCc-ccCCCeEE
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALM--VGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPL-LKEGSLSV 129 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~-~~~~~v~~ 129 (215)
-+.++.+.. .++|+++|+|+||+.|+.+..+++. .+. .+.++++|. + . ....+. .+..-+.+
T Consensus 61 KL~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~----------~P~~~~~~Gv~~i~~ 126 (269)
T 2px2_A 61 KLRWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-E----------EPMLMQSYGWNIVTM 126 (269)
T ss_dssp HHHHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-C----------CCCCCCSTTGGGEEE
T ss_pred HHHHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-c----------CCCcccCCCceEEEe
Confidence 345555553 4899999999999999999999887 311 234444442 0 0 000000 00012355
Q ss_pred EeC-CCCCCCCCCCCccEEEEccCCCC------------chHHHHHhcCCCc-EEEEEeCC
Q 028002 130 HVG-DGRKGWPEFAPYDAIHVGAAAPE------------IPQALIDQLKPGG-RMVIPVGN 176 (215)
Q Consensus 130 ~~~-d~~~~~~~~~~~D~V~~~~~~~~------------~~~~~~~~Lk~gG-~lv~~~~~ 176 (215)
.++ |+.+.. ..++|+|+|+..... .++-+.++|+||| .+++=+..
T Consensus 127 ~~G~Df~~~~--~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 127 KSGVDVFYKP--SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp ECSCCGGGSC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred eccCCccCCC--CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 556 876622 257999999975421 2234568899999 88875433
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.8e-05 Score=60.13 Aligned_cols=107 Identities=14% Similarity=0.052 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-C
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-D 133 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d 133 (215)
+.++.+... ++++.+|+|+||++|..+..++...+. .+|+++|+-..-.+. ......++.+.++|..+ |
T Consensus 67 L~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~-~~V~avdvG~~ghe~-------P~~~~s~gwn~v~fk~gvD 136 (267)
T 3p8z_A 67 LQWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKV-TEVRGYTKGGPGHEE-------PVPMSTYGWNIVKLMSGKD 136 (267)
T ss_dssp HHHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTE-EEEEEECCCSTTSCC-------CCCCCCTTTTSEEEECSCC
T ss_pred HHHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCC-CEEEEEecCCCCccC-------cchhhhcCcCceEEEeccc
Confidence 455555553 788999999999999999988887655 589999986643210 11112345578999998 8
Q ss_pred CCCCCCCCCCccEEEEccCCCC------------chHHHHHhcCCCcEEEEEe
Q 028002 134 GRKGWPEFAPYDAIHVGAAAPE------------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~~------------~~~~~~~~Lk~gG~lv~~~ 174 (215)
+....+ .++|.|+|+-.-.. .++.+.+.|++ |-+++=+
T Consensus 137 v~~~~~--~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KV 186 (267)
T 3p8z_A 137 VFYLPP--EKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKV 186 (267)
T ss_dssp GGGCCC--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEE
T ss_pred eeecCC--ccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEE
Confidence 644333 67999999865421 12234577888 6777643
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.86 E-value=5.1e-05 Score=59.18 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhh
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 116 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 116 (215)
+...++... ..++..|||.+||+|..+..+.+. | .+++|+|+++..++.+++++...
T Consensus 201 l~~~~i~~~---~~~~~~vlD~f~GsGtt~~~a~~~-g--r~~ig~e~~~~~~~~~~~r~~~~ 257 (260)
T 1g60_A 201 LIERIIRAS---SNPNDLVLDCFMGSGTTAIVAKKL-G--RNFIGCDMNAEYVNQANFVLNQL 257 (260)
T ss_dssp HHHHHHHHH---CCTTCEEEESSCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHc-C--CeEEEEeCCHHHHHHHHHHHHhc
Confidence 455555553 577899999999999999988876 3 79999999999999999998653
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.80 E-value=5.1e-05 Score=59.51 Aligned_cols=111 Identities=14% Similarity=0.030 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-C
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-D 133 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d 133 (215)
+..+.+.. .+.++.+|||+||++|..+..++...+. ..|+|+|+-..-.+. ......+....+.+..+ |
T Consensus 83 L~ei~~~~--~l~~~~~VlDLGaapGGwsq~~~~~~gv-~~V~avdvG~~~he~-------P~~~~ql~w~lV~~~~~~D 152 (321)
T 3lkz_A 83 LRWLVERR--FLEPVGKVIDLGCGRGGWCYYMATQKRV-QEVRGYTKGGPGHEE-------PQLVQSYGWNIVTMKSGVD 152 (321)
T ss_dssp HHHHHHTT--SCCCCEEEEEETCTTCHHHHHHTTCTTE-EEEEEECCCSTTSCC-------CCCCCBTTGGGEEEECSCC
T ss_pred HHHHHHhc--CCCCCCEEEEeCCCCCcHHHHHHhhcCC-CEEEEEEcCCCCccC-------cchhhhcCCcceEEEeccC
Confidence 45555553 3788899999999999999988877554 589999986642110 00001122245778777 6
Q ss_pred CCCCCCCCCCccEEEEccCCCC------------chHHHHHhcCCC-cEEEEEeCCC
Q 028002 134 GRKGWPEFAPYDAIHVGAAAPE------------IPQALIDQLKPG-GRMVIPVGNI 177 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~~------------~~~~~~~~Lk~g-G~lv~~~~~~ 177 (215)
+....+ .++|.|+|+-.-.. +++.+.+.|++| |-++|=+-..
T Consensus 153 v~~l~~--~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 153 VFYRPS--ECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp TTSSCC--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred HhhCCC--CCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 644433 67999999875211 123345778888 8888754433
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.74 E-value=5.1e-05 Score=59.50 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=64.1
Q ss_pred HHHHHHHHh---cCCCCCEEEEEcC------CccHHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHhhcccCcccCC
Q 028002 56 ATCLQLLEE---NLKPGMHALDIGS------GTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 125 (215)
Q Consensus 56 ~~~l~~l~~---~~~~~~~vLdiG~------G~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 125 (215)
..+.+.+.. -++.+++|||+|+ ..|+ .+++.+++. +.++++|+.+-.. ..
T Consensus 94 tqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS---~VLr~~~p~g~~VVavDL~~~~s-----------------da 153 (344)
T 3r24_A 94 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT---AVLRQWLPTGTLLVDSDLNDFVS-----------------DA 153 (344)
T ss_dssp HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH---HHHHHHSCTTCEEEEEESSCCBC-----------------SS
T ss_pred HHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH---HHHHHhCCCCcEEEEeeCccccc-----------------CC
Confidence 344555532 2466899999997 5666 344444665 5999999977421 01
Q ss_pred CeEEEeCCCCCCCCCCCCccEEEEccCC-------------CCch----HHHHHhcCCCcEEEEEeCC
Q 028002 126 SLSVHVGDGRKGWPEFAPYDAIHVGAAA-------------PEIP----QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 126 ~v~~~~~d~~~~~~~~~~~D~V~~~~~~-------------~~~~----~~~~~~Lk~gG~lv~~~~~ 176 (215)
. .++++|....... ++||+|+++... ..+. +-+.+.|+|||.|++=+..
T Consensus 154 ~-~~IqGD~~~~~~~-~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQ 219 (344)
T 3r24_A 154 D-STLIGDCATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 219 (344)
T ss_dssp S-EEEESCGGGEEES-SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred C-eEEEccccccccC-CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEec
Confidence 2 4588886553333 789999988632 1122 3467899999999996544
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.69 E-value=5.1e-06 Score=65.15 Aligned_cols=105 Identities=11% Similarity=0.033 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
+..+++.+.. . .+..+||+-+|||.++..+.+. + .+++.+|.++..++..++++.. ..++.+...|.
T Consensus 80 l~~yf~~l~~-~-n~~~~LDlfaGSGaLgiEaLS~-~--d~~vfvE~~~~a~~~L~~Nl~~--------~~~~~V~~~D~ 146 (283)
T 2oo3_A 80 FLEYISVIKQ-I-NLNSTLSYYPGSPYFAINQLRS-Q--DRLYLCELHPTEYNFLLKLPHF--------NKKVYVNHTDG 146 (283)
T ss_dssp GHHHHHHHHH-H-SSSSSCCEEECHHHHHHHHSCT-T--SEEEEECCSHHHHHHHTTSCCT--------TSCEEEECSCH
T ss_pred HHHHHHHHHH-h-cCCCceeEeCCcHHHHHHHcCC-C--CeEEEEeCCHHHHHHHHHHhCc--------CCcEEEEeCcH
Confidence 4556666653 3 3467899999999999998874 2 7899999999999988887754 15799999996
Q ss_pred CCC----CCCCCCccEEEEccCCCC--chHHHH------HhcCCCcEEEE
Q 028002 135 RKG----WPEFAPYDAIHVGAAAPE--IPQALI------DQLKPGGRMVI 172 (215)
Q Consensus 135 ~~~----~~~~~~~D~V~~~~~~~~--~~~~~~------~~Lk~gG~lv~ 172 (215)
... .+...+||+|++++++.. ..+.+. ..+.++|.+++
T Consensus 147 ~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 147 VSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV 196 (283)
T ss_dssp HHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence 542 233357999999999972 333322 35678998877
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00021 Score=57.98 Aligned_cols=91 Identities=12% Similarity=0.126 Sum_probs=69.9
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
.++++.+||-+|+|. |..+..+++..| .+|++++.++...+.+++ .+. +.+ + .+.. .. . ..
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa------~~v--~-~~~~-~~-~-~~ 234 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDALS----MGV------KHF--Y-TDPK-QC-K-EE 234 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHHH----TTC------SEE--E-SSGG-GC-C-SC
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHh----cCC------Cee--c-CCHH-HH-h-cC
Confidence 478899999999987 889999999876 589999999998887754 232 222 2 2221 11 1 27
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+|+.........+.+.+.|+++|.+++.
T Consensus 235 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 235 LDFIISTIPTHYDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp EEEEEECCCSCCCHHHHHTTEEEEEEEEEC
T ss_pred CCEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 999998888777889999999999999885
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00042 Score=56.47 Aligned_cols=98 Identities=16% Similarity=0.020 Sum_probs=71.0
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC-----C--
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR-----K-- 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~-----~-- 136 (215)
.++++.+||-+|+|. |..+..+++..|. ..|+++|.++...+.+++. .. .-+.....+.. +
T Consensus 176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~l-~~---------~~~~~~~~~~~~~~~~~~v 244 (363)
T 3m6i_A 176 GVRLGDPVLICGAGPIGLITMLCAKAAGA-CPLVITDIDEGRLKFAKEI-CP---------EVVTHKVERLSAEESAKKI 244 (363)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHHTTC-CSEEEEESCHHHHHHHHHH-CT---------TCEEEECCSCCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh-ch---------hcccccccccchHHHHHHH
Confidence 378899999999987 8899999998764 3599999999999988764 21 12222211110 0
Q ss_pred -CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 137 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 -~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.......+|+|+.........+.+.+.|+++|.+++.
T Consensus 245 ~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 245 VESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp HHHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred HHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEE
Confidence 0112257999998887766778899999999999875
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0003 Score=57.12 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=69.9
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC---CCCC---C
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRK---G 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~---d~~~---~ 137 (215)
.++++.+||-+|+|. |..+..+++..|. .+|+++|.++..++.+++. +.. .++.. +..+ .
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~~l----Ga~--------~vi~~~~~~~~~~v~~ 229 (352)
T 3fpc_A 163 NIKLGDTVCVIGIGPVGLMSVAGANHLGA-GRIFAVGSRKHCCDIALEY----GAT--------DIINYKNGDIVEQILK 229 (352)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTC-SSEEEECCCHHHHHHHHHH----TCC--------EEECGGGSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHh----CCc--------eEEcCCCcCHHHHHHH
Confidence 378899999999987 8889999988753 4799999999888877652 221 11111 1111 0
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+.........+.+.+.|+++|++++.
T Consensus 230 ~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 230 ATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp HTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred HcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEe
Confidence 112246999998888778889999999999999875
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00053 Score=56.13 Aligned_cols=95 Identities=21% Similarity=0.203 Sum_probs=69.4
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC---CCCC---C
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRK---G 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~---d~~~---~ 137 (215)
.++++.+||-.|+|. |..+..+++..|. .+|+++|.++...+.+++ .+.. .++.. +..+ .
T Consensus 179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~----lGa~--------~vi~~~~~~~~~~i~~ 245 (370)
T 4ej6_A 179 GIKAGSTVAILGGGVIGLLTVQLARLAGA-TTVILSTRQATKRRLAEE----VGAT--------ATVDPSAGDVVEAIAG 245 (370)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCHHHHHHHHH----HTCS--------EEECTTSSCHHHHHHS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCCC--------EEECCCCcCHHHHHHh
Confidence 378899999999987 8889999998763 489999999998887765 2221 11111 1100 0
Q ss_pred ---CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 ---WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ---~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
... +.+|+|+.........+.+.+.|++||.+++.
T Consensus 246 ~~~~~~-gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 246 PVGLVP-GGVDVVIECAGVAETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp TTSSST-TCEEEEEECSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred hhhccC-CCCCEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 112 47999998877667788899999999999874
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00042 Score=56.63 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=68.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------C
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------~ 137 (215)
.++++.+||.+|+|. |..+..+++..|. .+|+++|.++..++.+++. +.. .++.....+ .
T Consensus 187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~~Vi~~~~~~~~~~~a~~l----Ga~--------~vi~~~~~~~~~~~~~ 253 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQL----GAT--------HVINSKTQDPVAAIKE 253 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHH----TCS--------EEEETTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHHc----CCC--------EEecCCccCHHHHHHH
Confidence 378899999999987 8899999998763 3799999999988887642 221 112111111 0
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
... +.+|+|+.........+.+.+.|+++|++++.
T Consensus 254 ~~~-gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 254 ITD-GGVNFALESTGSPEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp HTT-SCEEEEEECSCCHHHHHHHHHTEEEEEEEEEC
T ss_pred hcC-CCCcEEEECCCCHHHHHHHHHHHhcCCEEEEe
Confidence 112 37999998877666778899999999999874
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00042 Score=56.37 Aligned_cols=95 Identities=19% Similarity=0.137 Sum_probs=68.2
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC------CCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD------GRKG 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d------~~~~ 137 (215)
.++++.+||.+|+|. |..+..+++..|. .+|+++|.++...+.+++ .+. + .++..+ ....
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~----lGa------~--~vi~~~~~~~~~~~~~ 234 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKE----IGA------D--LVLQISKESPQEIARK 234 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH----TTC------S--EEEECSSCCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----hCC------C--EEEcCcccccchHHHH
Confidence 378899999999987 8889999988763 489999999988887754 222 1 112111 0000
Q ss_pred ---CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 ---WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ---~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
... ..+|+|+.........+.+.+.|+++|++++.
T Consensus 235 i~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 235 VEGQLG-CKPEVTIECTGAEASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHHHHT-SCCSEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred HHHHhC-CCCCEEEECCCChHHHHHHHHHhcCCCEEEEE
Confidence 011 46999998877666678889999999999874
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00056 Score=56.50 Aligned_cols=95 Identities=20% Similarity=0.210 Sum_probs=67.3
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC----C-
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----W- 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~----~- 138 (215)
.++++.+||.+|+|. |..+..+++..|. .+|+++|.++..++.+++ .+ .+++.....+. .
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~----lG---------a~~i~~~~~~~~~~~~~ 247 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLLGA-ACVIVGDQNPERLKLLSD----AG---------FETIDLRNSAPLRDQID 247 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHT----TT---------CEEEETTSSSCHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----cC---------CcEEcCCCcchHHHHHH
Confidence 378899999999987 8899999998763 489999999998887753 22 12222111111 0
Q ss_pred --CCCCCccEEEEccCCCC--------------chHHHHHhcCCCcEEEEE
Q 028002 139 --PEFAPYDAIHVGAAAPE--------------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 --~~~~~~D~V~~~~~~~~--------------~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+|+....... ..+.+.+.|+++|++++.
T Consensus 248 ~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 248 QILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp HHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred HHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 01136999998776543 578889999999998764
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00014 Score=59.49 Aligned_cols=93 Identities=22% Similarity=0.213 Sum_probs=68.3
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC---CCCCCCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRKGWPE 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~---d~~~~~~~ 140 (215)
.++++.+||.+|+|. |..+..+++..| .+|++++.++..++.+++ .+.. . ++.. +......
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~~~~~~a~~----lGa~------~--vi~~~~~~~~~~~~- 255 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKA----LGAD------E--VVNSRNADEMAAHL- 255 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH----HTCS------E--EEETTCHHHHHTTT-
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCc------E--EeccccHHHHHHhh-
Confidence 478899999999986 888889998876 579999999998888764 2221 1 1111 1001111
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+.+|+|+.........+.+.+.|+++|.++..
T Consensus 256 -~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 256 -KSFDFILNTVAAPHNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp -TCEEEEEECCSSCCCHHHHHTTEEEEEEEEEC
T ss_pred -cCCCEEEECCCCHHHHHHHHHHhccCCEEEEe
Confidence 47999998888777788899999999998874
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00047 Score=55.96 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=67.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC----CCCCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD----GRKGWP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d----~~~~~~ 139 (215)
.++++.+||-+|+|. |..+..+++..| .+|++++.++...+.+++ .+. + .++..+ ..+...
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa------~--~~~~~~~~~~~~~~i~ 230 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKN----CGA------D--VTLVVDPAKEEESSII 230 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTC------S--EEEECCTTTSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCC------C--EEEcCcccccHHHHHH
Confidence 378899999999986 888889998876 469999999998887753 222 1 112111 110000
Q ss_pred ---C---CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 ---E---FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ---~---~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
. ...+|+|+.........+.+.+.|+++|.++..
T Consensus 231 ~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 231 ERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred HHhccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 0 246999998877666678889999999999874
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00097 Score=55.01 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=67.4
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-----
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----- 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----- 138 (215)
.++++.+||.+|+|. |.++..+++..|. .+|+++|.++..++.+++ .+ .+.+.....+.+
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga-~~Vi~~~~~~~~~~~a~~----lG---------a~~i~~~~~~~~~~~v~ 247 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKA----QG---------FEIADLSLDTPLHEQIA 247 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH----TT---------CEEEETTSSSCHHHHHH
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-CeEEEEcCCHHHHHHHHH----cC---------CcEEccCCcchHHHHHH
Confidence 478899999999987 8899999998763 479999999998888754 22 122221111100
Q ss_pred --CCCCCccEEEEccCCCC---------------chHHHHHhcCCCcEEEEE
Q 028002 139 --PEFAPYDAIHVGAAAPE---------------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 --~~~~~~D~V~~~~~~~~---------------~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+|+....... ..+.+.+.|+++|++++.
T Consensus 248 ~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 248 ALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp HHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred HHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 11136999998776542 567889999999999764
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0017 Score=52.34 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=69.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------C
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------~ 137 (215)
...++.+||-.|+|. |.++..+++..|. ..++++|.++..++.+++ .+.. .++...-.+ .
T Consensus 157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~-~~vi~~~~~~~k~~~a~~----lGa~--------~~i~~~~~~~~~~~~~ 223 (346)
T 4a2c_A 157 QGCENKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDISSEKLALAKS----FGAM--------QTFNSSEMSAPQMQSV 223 (346)
T ss_dssp TCCTTSEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH----TTCS--------EEEETTTSCHHHHHHH
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHcCC-cEEEEEechHHHHHHHHH----cCCe--------EEEeCCCCCHHHHHHh
Confidence 478899999999987 7888888888764 578999999998888764 3321 222211111 0
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+.........+.+.++|+++|.+++.
T Consensus 224 ~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 224 LRELRFNQLILETAGVPQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp HGGGCSSEEEEECSCSHHHHHHHHHHCCTTCEEEEC
T ss_pred hcccCCcccccccccccchhhhhhheecCCeEEEEE
Confidence 112246899988887777788899999999999874
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0014 Score=53.31 Aligned_cols=95 Identities=15% Similarity=0.055 Sum_probs=68.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC------
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG------ 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~------ 137 (215)
.++++.+||-+|+|. |..+..+++..| .+|++++.++..++.+++ .+. +. ++..+..+.
T Consensus 186 ~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa------~~--vi~~~~~~~~~~v~~ 251 (363)
T 3uog_A 186 HLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAFA----LGA------DH--GINRLEEDWVERVYA 251 (363)
T ss_dssp CCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----HTC------SE--EEETTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHHH----cCC------CE--EEcCCcccHHHHHHH
Confidence 467899999999887 888889998876 589999999988888754 222 11 222111110
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
......+|+|+.... ....+.+.+.|+++|.+++.-
T Consensus 252 ~~~g~g~D~vid~~g-~~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 252 LTGDRGADHILEIAG-GAGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp HHTTCCEEEEEEETT-SSCHHHHHHHEEEEEEEEEEC
T ss_pred HhCCCCceEEEECCC-hHHHHHHHHHhhcCCEEEEEe
Confidence 012237999998777 567788899999999998753
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0012 Score=54.31 Aligned_cols=73 Identities=21% Similarity=0.090 Sum_probs=56.3
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--------CC
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--------EF 141 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------~~ 141 (215)
.+++|+.||.|.++..+.+. |. ..+.++|+++.+++..+.++ ....++.+|+.+... ..
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G~-~~v~avE~d~~a~~t~~~N~-----------~~~~~~~~DI~~~~~~~~~~~~~~~ 69 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-GF-DVKMAVEIDQHAINTHAINF-----------PRSLHVQEDVSLLNAEIIKGFFKND 69 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-TC-EEEEEECSCHHHHHHHHHHC-----------TTSEEECCCGGGCCHHHHHHHHCSC
T ss_pred CeEEEEccCcCHHHHHHHHC-CC-cEEEEEeCCHHHHHHHHHhC-----------CCCceEecChhhcCHHHHHhhcccC
Confidence 58999999999999999887 43 56789999999888777654 345677788765422 12
Q ss_pred CCccEEEEccCCCC
Q 028002 142 APYDAIHVGAAAPE 155 (215)
Q Consensus 142 ~~~D~V~~~~~~~~ 155 (215)
..+|+|+..++++.
T Consensus 70 ~~~D~i~ggpPCQ~ 83 (376)
T 3g7u_A 70 MPIDGIIGGPPCQG 83 (376)
T ss_dssp CCCCEEEECCCCCT
T ss_pred CCeeEEEecCCCCC
Confidence 57999999998754
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00041 Score=55.99 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=68.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC---CC-
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WP- 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~- 139 (215)
.++++.+||-.|+|. |..+..+++..| .+|+++|.++...+.+++ .+. + .++.....+. ..
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa------~--~~i~~~~~~~~~~~~~ 228 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLARR----LGA------E--VAVNARDTDPAAWLQK 228 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTC------S--EEEETTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH----cCC------C--EEEeCCCcCHHHHHHH
Confidence 378899999999987 999999999876 589999999998887754 222 1 1121111110 00
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+.+|+|+.........+.+.+.|+++|.+++.
T Consensus 229 ~~g~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 229 EIGGAHGVLVTAVSPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp HHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred hCCCCCEEEEeCCCHHHHHHHHHHhccCCEEEEe
Confidence 0136899988877667788899999999999875
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0011 Score=54.26 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=68.9
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC-CCCC-----
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-GRKG----- 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d-~~~~----- 137 (215)
.++++.+||-+|+|. |..+..+++..|. .+|+++|.++..++.+++ .+.. . ++... ....
T Consensus 190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga-~~Vi~~~~~~~~~~~a~~----lGa~------~--vi~~~~~~~~~~~~i 256 (378)
T 3uko_A 190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGA-SRIIGIDIDSKKYETAKK----FGVN------E--FVNPKDHDKPIQEVI 256 (378)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHHHTC-SCEEEECSCTTHHHHHHT----TTCC------E--EECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCCc------E--EEccccCchhHHHHH
Confidence 367899999999986 8999999998864 489999999998887753 2321 1 11111 0010
Q ss_pred --CCCCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028002 138 --WPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 138 --~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
... +.+|+|+.........+.+.+.|++| |++++.
T Consensus 257 ~~~~~-gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 257 VDLTD-GGVDYSFECIGNVSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp HHHTT-SCBSEEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred HHhcC-CCCCEEEECCCCHHHHHHHHHHhhccCCEEEEE
Confidence 112 47999998888767788899999997 998874
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00058 Score=54.51 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=61.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
.++++.+||-+|+|. |..+..+++..| .+|++++ ++...+.+++ .+.. .++ .| .+.. ...
T Consensus 139 ~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~-~~~~~~~~~~----lGa~--------~v~-~d-~~~v--~~g 199 (315)
T 3goh_A 139 PLTKQREVLIVGFGAVNNLLTQMLNNAG--YVVDLVS-ASLSQALAAK----RGVR--------HLY-RE-PSQV--TQK 199 (315)
T ss_dssp CCCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEC-SSCCHHHHHH----HTEE--------EEE-SS-GGGC--CSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEE-ChhhHHHHHH----cCCC--------EEE-cC-HHHh--CCC
Confidence 367899999999986 899999999886 4899999 8888887764 2221 111 13 2222 368
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+|+....-... ..+.+.|+++|.++..
T Consensus 200 ~Dvv~d~~g~~~~-~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 200 YFAIFDAVNSQNA-AALVPSLKANGHIICI 228 (315)
T ss_dssp EEEEECC--------TTGGGEEEEEEEEEE
T ss_pred ccEEEECCCchhH-HHHHHHhcCCCEEEEE
Confidence 9999876655444 5678999999999886
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0036 Score=51.09 Aligned_cols=95 Identities=18% Similarity=0.151 Sum_probs=68.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC-----CCC--
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-----GRK-- 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d-----~~~-- 136 (215)
.++++.+||-+|+|. |..+..+++..|. .+|+++|.++...+.+++ .+.. .++... ..+
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~----lGa~--------~vi~~~~~~~~~~~~i 254 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIE----LGAT--------ECLNPKDYDKPIYEVI 254 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHH----TTCS--------EEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH----cCCc--------EEEecccccchHHHHH
Confidence 478899999999987 8889999998763 379999999998887764 2221 111111 100
Q ss_pred -CCCCCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028002 137 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 137 -~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
.... +.+|+|+.........+.+.+.|+++ |.++..
T Consensus 255 ~~~t~-gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 255 CEKTN-GGVDYAVECAGRIETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp HHHTT-SCBSEEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHhC-CCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 0011 37999998877666778889999999 998874
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00014 Score=59.23 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=67.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC----CCCCCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG----DGRKGWP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~----d~~~~~~ 139 (215)
.++++.+||-+|+|. |..+..+++..| .+|++++.++..++.+++ .+. +. ++.. +......
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~~~~~~~~----lGa------~~--v~~~~~~~~~~~~~~ 241 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMK----MGA------DH--YIATLEEGDWGEKYF 241 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH----HTC------SE--EEEGGGTSCHHHHSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH----cCC------CE--EEcCcCchHHHHHhh
Confidence 478899999999976 888889998876 479999999988887764 222 11 1111 1111111
Q ss_pred CCCCccEEEEccCC--CCchHHHHHhcCCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~--~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+.+|+|+..... ....+.+.+.|+++|.++..
T Consensus 242 --~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 242 --DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp --SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEEC
T ss_pred --cCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEe
Confidence 479999988776 56677888999999998874
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00032 Score=56.73 Aligned_cols=97 Identities=15% Similarity=0.114 Sum_probs=70.3
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC--CCC---C
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG--RKG---W 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~--~~~---~ 138 (215)
.++++.+||-+|+|. |..+..+++..+. .+|+++|.++...+.+++ .+. +. ++..+. .+. .
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~-~~Vi~~~~~~~~~~~~~~----lGa------~~--~i~~~~~~~~~v~~~ 234 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSA-ARVIAVDLDDDRLALARE----VGA------DA--AVKSGAGAADAIREL 234 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESCHHHHHHHHH----TTC------SE--EEECSTTHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----cCC------CE--EEcCCCcHHHHHHHH
Confidence 478899999999987 8899999988743 689999999998888764 232 11 221111 000 0
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
.....+|+|+.........+.+.+.|+++|.+++.-
T Consensus 235 t~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 235 TGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp HGGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECS
T ss_pred hCCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEEC
Confidence 011379999988887767889999999999998753
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0012 Score=54.25 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=68.0
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC------CCC--
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD------GRK-- 136 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d------~~~-- 136 (215)
++++.+||-+|+|. |..+..+++..|. .+|++++.++...+.+++ .+. + .++... ..+
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~~~~----lGa------~--~vi~~~~~~~~~~~~~v 259 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEE----IGA------D--LTLNRRETSVEERRKAI 259 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHH----TTC------S--EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCC-ceEEEEcCCHHHHHHHHH----cCC------c--EEEeccccCcchHHHHH
Confidence 67789999999886 8888899988752 489999999988887763 222 1 112111 000
Q ss_pred -CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 137 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 -~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.......+|+|+.........+.+.+.|+++|.++..
T Consensus 260 ~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 260 MDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp HHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred HHHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 0111136999998888777888899999999998874
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0033 Score=51.94 Aligned_cols=96 Identities=11% Similarity=0.111 Sum_probs=66.0
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------C
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------~ 137 (215)
.++++.+||-+|+|. |..+..+++..|. .+|+++|.++...+.+++. +.. .++.....+ .
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~~~~l----Ga~--------~vi~~~~~~~~~~i~~ 276 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGA-SKVILSEPSEVRRNLAKEL----GAD--------HVIDPTKENFVEAVLD 276 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCHHHHHHHHHH----TCS--------EEECTTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHc----CCC--------EEEcCCCCCHHHHHHH
Confidence 367889999999987 8889999998763 4899999999988887642 221 112111111 0
Q ss_pred CCCCCCccEEEEccCCC-CchHHHHHhc----CCCcEEEEE
Q 028002 138 WPEFAPYDAIHVGAAAP-EIPQALIDQL----KPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~-~~~~~~~~~L----k~gG~lv~~ 173 (215)
......+|+|+...... ...+.+.+.| +++|.+++.
T Consensus 277 ~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~ 317 (404)
T 3ip1_A 277 YTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIV 317 (404)
T ss_dssp HTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred HhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEe
Confidence 11224699999877665 3555666666 999999885
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00042 Score=56.37 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=66.3
Q ss_pred CC-CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-CCCC
Q 028002 66 LK-PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFA 142 (215)
Q Consensus 66 ~~-~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~ 142 (215)
+. ++.+||-+|+|. |..+..+++..| .+|++++.++...+.+++. .+. +.+ +..+-.+.. ...+
T Consensus 177 ~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~Vi~~~~~~~~~~~~~~~---lGa------~~v--i~~~~~~~~~~~~~ 243 (357)
T 2cf5_A 177 LKQPGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSNKKREEALQD---LGA------DDY--VIGSDQAKMSELAD 243 (357)
T ss_dssp TTSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSTTHHHHHHTT---SCC------SCE--EETTCHHHHHHSTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHH---cCC------cee--eccccHHHHHHhcC
Confidence 56 889999999986 888889998876 5899999998877766532 222 111 111100000 0013
Q ss_pred CccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 143 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+|+|+.........+.+.+.|+++|.++..
T Consensus 244 g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 244 SLDYVIDTVPVHHALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp TEEEEEECCCSCCCSHHHHTTEEEEEEEEEC
T ss_pred CCCEEEECCCChHHHHHHHHHhccCCEEEEe
Confidence 6999998887766778889999999998874
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.003 Score=51.52 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=67.8
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-C----CCC--
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-D----GRK-- 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d----~~~-- 136 (215)
.++++.+||-+|+|. |..+..+++..|. .+|+++|.++...+.+++ .+.. . ++.. + ..+
T Consensus 187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga-~~Vi~~~~~~~~~~~~~~----lGa~------~--vi~~~~~~~~~~~~v 253 (373)
T 2fzw_A 187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKE----FGAT------E--CINPQDFSKPIQEVL 253 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHH----HTCS------E--EECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCCc------e--EeccccccccHHHHH
Confidence 367889999999986 8888899988763 379999999998888764 2221 1 1111 1 100
Q ss_pred -CCCCCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028002 137 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 137 -~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
.... +.+|+|+.........+.+.+.|+++ |.+++.
T Consensus 254 ~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 254 IEMTD-GGVDYSFECIGNVKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp HHHTT-SCBSEEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHhC-CCCCEEEECCCcHHHHHHHHHhhccCCcEEEEE
Confidence 0011 37999998877666778889999999 998874
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0016 Score=52.53 Aligned_cols=92 Identities=23% Similarity=0.198 Sum_probs=66.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC-CCC---
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-GWP--- 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~--- 139 (215)
.++++.+||-+|+|. |..+..+++..| .+|++++.++..++.+++ .+. + .++ |..+ .+.
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----lGa------~--~~~--d~~~~~~~~~~ 224 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKE----LGA------D--LVV--NPLKEDAAKFM 224 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH----TTC------S--EEE--CTTTSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----CCC------C--EEe--cCCCccHHHHH
Confidence 378899999999975 888888888875 589999999988887753 222 1 111 1111 000
Q ss_pred ---CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 ---EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ---~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
. +.+|+|+.........+.+.+.|+++|.++..
T Consensus 225 ~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 225 KEKV-GGVHAAVVTAVSKPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp HHHH-SSEEEEEESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred HHHh-CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEe
Confidence 1 36999998877666778889999999998874
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00014 Score=58.86 Aligned_cols=95 Identities=11% Similarity=-0.015 Sum_probs=66.9
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe-EEEe-CCCCCCCCC
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMV--GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHV-GDGRKGWPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~--~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v-~~~~-~d~~~~~~~ 140 (215)
+ ++.+||-+|+|. |..+..+++.. | .+|++++.++...+.+++ .+.. .+ +... .+.......
T Consensus 169 ~-~g~~VlV~GaG~vG~~aiqlak~~~~G--a~Vi~~~~~~~~~~~~~~----lGa~------~vi~~~~~~~~~~~~~~ 235 (344)
T 2h6e_A 169 F-AEPVVIVNGIGGLAVYTIQILKALMKN--ITIVGISRSKKHRDFALE----LGAD------YVSEMKDAESLINKLTD 235 (344)
T ss_dssp C-SSCEEEEECCSHHHHHHHHHHHHHCTT--CEEEEECSCHHHHHHHHH----HTCS------EEECHHHHHHHHHHHHT
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHhcCC--CEEEEEeCCHHHHHHHHH----hCCC------EEeccccchHHHHHhhc
Confidence 6 899999999986 88888999887 6 579999999998888764 2221 11 0000 011011111
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+|+|+.........+.+.+.|+++|.++..
T Consensus 236 g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 236 GLGASIAIDLVGTEETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp TCCEEEEEESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred CCCccEEEECCCChHHHHHHHHHhhcCCEEEEe
Confidence 137999998887766778889999999998874
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00076 Score=54.71 Aligned_cols=74 Identities=11% Similarity=-0.008 Sum_probs=54.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC---CCc
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF---APY 144 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~ 144 (215)
..+|+|+.||.|.++..+.+. |.. ..+.++|+++.+++..+.++. ...++.+|+.+..... ..+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~~-----------~~~~~~~Di~~~~~~~~~~~~~ 69 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFP-----------HTQLLAKTIEGITLEEFDRLSF 69 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT-----------TSCEECSCGGGCCHHHHHHHCC
T ss_pred CCeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhcc-----------ccccccCCHHHccHhHcCcCCc
Confidence 358999999999999999887 421 479999999999998887753 2346677776643210 168
Q ss_pred cEEEEccCCC
Q 028002 145 DAIHVGAAAP 154 (215)
Q Consensus 145 D~V~~~~~~~ 154 (215)
|+|+.+++++
T Consensus 70 D~l~~gpPCq 79 (343)
T 1g55_A 70 DMILMSPPCQ 79 (343)
T ss_dssp SEEEECCC--
T ss_pred CEEEEcCCCc
Confidence 9999998853
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.002 Score=52.67 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=67.5
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC-----CCCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-----GRKGW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d-----~~~~~ 138 (215)
.++++.+||-+|+|. |..+..+++..|. .+|+++|.++...+.+++ .+.. .++... ..+..
T Consensus 192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~----lGa~--------~vi~~~~~~~~~~~~v 258 (376)
T 1e3i_A 192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKA----LGAT--------DCLNPRELDKPVQDVI 258 (376)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH----TTCS--------EEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCc--------EEEccccccchHHHHH
Confidence 367889999999986 8888999998753 479999999998887753 2221 111111 10000
Q ss_pred C--CCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028002 139 P--EFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 139 ~--~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
. ..+.+|+|+.........+.+.+.|+++ |.+++.
T Consensus 259 ~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 259 TELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEE
Confidence 0 0137999998877666778899999999 998874
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0023 Score=52.33 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=67.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC-CCCCCC---
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-GRKGWP--- 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d-~~~~~~--- 139 (215)
.++++.+||-+|+|. |..+..+++..|. .+|+++|.++..++.+++ .+. + .++... ....+.
T Consensus 189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~~----lGa------~--~vi~~~~~~~~~~~~~ 255 (374)
T 1cdo_A 189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGA-KRIIAVDLNPDKFEKAKV----FGA------T--DFVNPNDHSEPISQVL 255 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH----TTC------C--EEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----hCC------c--eEEeccccchhHHHHH
Confidence 467889999999986 8888899988753 379999999998887763 222 1 111111 000000
Q ss_pred ---CCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028002 140 ---EFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 140 ---~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
..+.+|+|+.........+.+.+.|+++ |.+++.
T Consensus 256 ~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 256 SKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEE
Confidence 0137999998877666778899999999 998874
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0033 Score=50.28 Aligned_cols=95 Identities=19% Similarity=0.181 Sum_probs=66.3
Q ss_pred cCCCCCEEEEEc-CCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------
Q 028002 65 NLKPGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 136 (215)
Q Consensus 65 ~~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------ 136 (215)
.++++.+||-.| +|. |..+..+++..| .+|++++.++..++.+++ .+. + .++.....+
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----~Ga------~--~~~~~~~~~~~~~~~ 202 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKALG--AKLIGTVSSPEKAAHAKA----LGA------W--ETIDYSHEDVAKRVL 202 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHH----HTC------S--EEEETTTSCHHHHHH
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCC------C--EEEeCCCccHHHHHH
Confidence 367889999999 554 888888888876 589999999998887764 221 1 111111111
Q ss_pred CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 137 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
.......+|+|+.+... .....+.+.|+++|.+++.-
T Consensus 203 ~~~~~~g~Dvvid~~g~-~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 203 ELTDGKKCPVVYDGVGQ-DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp HHTTTCCEEEEEESSCG-GGHHHHHTTEEEEEEEEECC
T ss_pred HHhCCCCceEEEECCCh-HHHHHHHHHhcCCCEEEEEe
Confidence 00122479999987765 56778899999999998853
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00018 Score=71.80 Aligned_cols=99 Identities=14% Similarity=0.199 Sum_probs=55.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCC----CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC-CCCC
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGP----QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-WPEF 141 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~----~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~ 141 (215)
.+..+|||+|.|+|..+..+.+.++. ..+++..|+|+...+.+++++... .++...-|..+. ....
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---------di~~~~~d~~~~~~~~~ 1309 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---------HVTQGQWDPANPAPGSL 1309 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---------TEEEECCCSSCCCC---
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---------ccccccccccccccCCC
Confidence 45789999999999887777766542 247999999998888888777542 222211122111 1123
Q ss_pred CCccEEEEccCCC------CchHHHHHhcCCCcEEEEEe
Q 028002 142 APYDAIHVGAAAP------EIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 142 ~~~D~V~~~~~~~------~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+.||+|++...++ ..+.+++++|||||+|++..
T Consensus 1310 ~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1310 GKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp --CCEEEEECC--------------------CCEEEEEE
T ss_pred CceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 5799999887765 34567889999999998853
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0019 Score=52.51 Aligned_cols=95 Identities=16% Similarity=0.090 Sum_probs=64.7
Q ss_pred CCCC------CEEEEEcCCc-cHHH-HHHH-HHhCCCCeEEEEecChH---HHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 66 LKPG------MHALDIGSGT-GYLT-ACFA-LMVGPQGRAVGVEHIPE---LVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 66 ~~~~------~~vLdiG~G~-G~~~-~~l~-~~~~~~~~v~~~D~s~~---~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
++++ .+||-+|+|. |..+ ..++ +..|. .+|++++.++. ..+.+++ .+. +.++....+
T Consensus 164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga-~~Vi~~~~~~~~~~~~~~~~~----lGa------~~v~~~~~~ 232 (357)
T 2b5w_A 164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGY-ENLYCLGRRDRPDPTIDIIEE----LDA------TYVDSRQTP 232 (357)
T ss_dssp HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCC-CEEEEEECCCSSCHHHHHHHH----TTC------EEEETTTSC
T ss_pred CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCC-cEEEEEeCCcccHHHHHHHHH----cCC------cccCCCccC
Confidence 6788 9999999976 7888 8888 77653 34999999887 7777753 222 111000001
Q ss_pred CCC--CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 134 GRK--GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 134 ~~~--~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+ .. . +.+|+|+.........+.+.+.|+++|.++..
T Consensus 233 ~~~i~~~-~-gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 233 VEDVPDV-Y-EQMDFIYEATGFPKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp GGGHHHH-S-CCEEEEEECSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHh-C-CCCCEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence 111 01 1 37999998877666678889999999998874
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00095 Score=54.49 Aligned_cols=95 Identities=23% Similarity=0.316 Sum_probs=65.5
Q ss_pred CC-CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-CCCC
Q 028002 66 LK-PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFA 142 (215)
Q Consensus 66 ~~-~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~ 142 (215)
+. ++.+||-+|+|. |..+..+++..| .+|++++.++...+.+++.+ +. + .++...-.+.. ...+
T Consensus 184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~l---Ga------~--~v~~~~~~~~~~~~~~ 250 (366)
T 1yqd_A 184 LDEPGKHIGIVGLGGLGHVAVKFAKAFG--SKVTVISTSPSKKEEALKNF---GA------D--SFLVSRDQEQMQAAAG 250 (366)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGGHHHHHHTS---CC------S--EEEETTCHHHHHHTTT
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhc---CC------c--eEEeccCHHHHHHhhC
Confidence 56 889999999886 888888888876 58999999988777665332 21 1 11111100000 0014
Q ss_pred CccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 143 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+|+|+.........+.+.+.|+++|.++..
T Consensus 251 ~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 251 TLDGIIDTVSAVHPLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp CEEEEEECCSSCCCSHHHHHHEEEEEEEEEC
T ss_pred CCCEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 6999998887766678889999999998874
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0034 Score=51.30 Aligned_cols=95 Identities=14% Similarity=0.093 Sum_probs=67.4
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC-----CCC--
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-----GRK-- 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d-----~~~-- 136 (215)
.++++.+||-+|+|. |..+..+++..|. .+|++++.++...+.+++ .+.. .++... ..+
T Consensus 188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~~----lGa~--------~vi~~~~~~~~~~~~~ 254 (374)
T 2jhf_A 188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGA-ARIIGVDINKDKFAKAKE----VGAT--------ECVNPQDYKKPIQEVL 254 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH----TTCS--------EEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----hCCc--------eEecccccchhHHHHH
Confidence 467889999999987 8888899988753 379999999998887753 2221 111111 100
Q ss_pred -CCCCCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028002 137 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 137 -~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
.... +.+|+|+.........+.+.+.|+++ |.+++.
T Consensus 255 ~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 255 TEMSN-GGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp HHHTT-SCBSEEEECSCCHHHHHHHHHHBCTTTCEEEEC
T ss_pred HHHhC-CCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEe
Confidence 0011 37999998877666778889999999 998874
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00062 Score=55.03 Aligned_cols=100 Identities=20% Similarity=0.161 Sum_probs=66.9
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC---CCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WPE 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~ 140 (215)
..+++.+||-+|+|. |.++..+++..+. .+|+++|.+++.++.+++ .+.. .-++....|..+. ...
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g-~~Vi~~~~~~~r~~~~~~----~Ga~-----~~i~~~~~~~~~~v~~~t~ 229 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFG-AKVIAVDINQDKLNLAKK----IGAD-----VTINSGDVNPVDEIKKITG 229 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTSC-CEEEEEESCHHHHHHHHH----TTCS-----EEEEC-CCCHHHHHHHHTT
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhCC-CEEEEEECcHHHhhhhhh----cCCe-----EEEeCCCCCHHHHhhhhcC
Confidence 378899999999997 5666677766543 789999999988777654 2221 1111111121110 112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
...+|.++.............+.|+++|.+++..
T Consensus 230 g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 230 GLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp SSCEEEEEECCSCHHHHHHHHHTEEEEEEEEECC
T ss_pred CCCceEEEEeccCcchhheeheeecCCceEEEEe
Confidence 2467888887777777888999999999988753
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0043 Score=50.55 Aligned_cols=92 Identities=14% Similarity=0.096 Sum_probs=65.4
Q ss_pred CCCEEEEEc-CCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC--CCC---CCCCC
Q 028002 68 PGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGR---KGWPE 140 (215)
Q Consensus 68 ~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~--d~~---~~~~~ 140 (215)
++.+||-.| +|. |..+..+++.++. .+|++++.++...+.+++ .+.. . ++.. +.. ... .
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g-~~Vi~~~~~~~~~~~~~~----lGad------~--vi~~~~~~~~~v~~~-~ 236 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTD-LTVIATASRPETQEWVKS----LGAH------H--VIDHSKPLAAEVAAL-G 236 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHH----TTCS------E--EECTTSCHHHHHHTT-C
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHHHH----cCCC------E--EEeCCCCHHHHHHHh-c
Confidence 678999998 665 8999999987432 689999999988888754 3321 1 1111 110 011 2
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+.+|+|+.........+.+.++|+++|.+++.
T Consensus 237 ~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 237 LGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp SCCEEEEEECSCHHHHHHHHHHHSCTTCEEEEC
T ss_pred CCCceEEEECCCchhhHHHHHHHhcCCCEEEEE
Confidence 257999998776666778889999999999875
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0034 Score=50.40 Aligned_cols=94 Identities=17% Similarity=0.130 Sum_probs=65.3
Q ss_pred cCCCCCEEEEEc-CCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC-----
Q 028002 65 NLKPGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----- 137 (215)
Q Consensus 65 ~~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~----- 137 (215)
.++++.+||-.| +|. |..+..+++..| .+|++++.++..++.+++ .+. + .++.....+.
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----~ga------~--~~~~~~~~~~~~~~~ 210 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKG--AHTIAVASTDEKLKIAKE----YGA------E--YLINASKEDILRQVL 210 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTC------S--EEEETTTSCHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCC------c--EEEeCCCchHHHHHH
Confidence 367889999999 444 888888888876 589999999988887754 221 1 1121111110
Q ss_pred -CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 -~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+.+... ...+.+.+.|+++|.++..
T Consensus 211 ~~~~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 211 KFTNGKGVDASFDSVGK-DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp HHTTTSCEEEEEECCGG-GGHHHHHHHEEEEEEEEEC
T ss_pred HHhCCCCceEEEECCCh-HHHHHHHHHhccCCEEEEE
Confidence 0112469999987765 6678889999999999874
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0025 Score=51.10 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecCh---HHHHHHHHHHHhh
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIP---ELVVSSIQNIEKS 116 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~---~~~~~a~~~~~~~ 116 (215)
+...++... ..++..|||..||+|..+.++.+.. .+.+|+|+++ ..++.+++++...
T Consensus 231 l~~~~i~~~---~~~~~~vlDpF~GsGtt~~aa~~~~---r~~ig~e~~~~~~~~~~~~~~Rl~~~ 290 (319)
T 1eg2_A 231 VIERLVRAL---SHPGSTVLDFFAGSGVTARVAIQEG---RNSICTDAAPVFKEYYQKQLTFLQDD 290 (319)
T ss_dssp HHHHHHHHH---SCTTCEEEETTCTTCHHHHHHHHHT---CEEEEEESSTHHHHHHHHHHHHC---
T ss_pred HHHHHHHHh---CCCCCEEEecCCCCCHHHHHHHHcC---CcEEEEECCccHHHHHHHHHHHHHHc
Confidence 555666553 5788999999999999998888773 7999999999 9999999887653
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0041 Score=50.05 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=52.8
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccEE
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~V 147 (215)
+.+++|+.||.|.++..+.+. |. ..+.++|+++.+++..+.++... . .+|+.+... ....+|+|
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-G~-~~v~~~e~d~~a~~t~~~N~~~~---------~----~~Di~~~~~~~~~~~D~l 75 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-GA-ECVYSNEWDKYAQEVYEMNFGEK---------P----EGDITQVNEKTIPDHDIL 75 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-TC-EEEEEECCCHHHHHHHHHHHSCC---------C----BSCGGGSCGGGSCCCSEE
T ss_pred CCcEEEECCCcCHHHHHHHHC-CC-eEEEEEeCCHHHHHHHHHHcCCC---------C----cCCHHHcCHhhCCCCCEE
Confidence 478999999999999999877 44 57899999999988888776321 1 466654332 11358999
Q ss_pred EEccCCC
Q 028002 148 HVGAAAP 154 (215)
Q Consensus 148 ~~~~~~~ 154 (215)
+.+++++
T Consensus 76 ~~gpPCQ 82 (327)
T 2c7p_A 76 CAGFPCQ 82 (327)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9888764
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0034 Score=52.10 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=43.2
Q ss_pred CCCCCEEEEEcCCccHHHHHHH-HHhCCCCeEEEEecChHHHHHHHHHHHh
Q 028002 66 LKPGMHALDIGSGTGYLTACFA-LMVGPQGRAVGVEHIPELVVSSIQNIEK 115 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~-~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 115 (215)
++++..|+|+|++.|..+..++ +..++.++|+++|+++...+..++++..
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4688999999999999999988 4543337999999999999999999876
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0023 Score=51.38 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh
Q 028002 53 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 115 (215)
Q Consensus 53 ~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 115 (215)
.+...++... ..++..|||..||+|..+.++.+. | .+.+|+|+++..++.+++++..
T Consensus 240 ~l~~~~i~~~---~~~~~~VlDpF~GsGtt~~aa~~~-g--r~~ig~e~~~~~~~~~~~r~~~ 296 (323)
T 1boo_A 240 KLPEFFIRML---TEPDDLVVDIFGGSNTTGLVAERE-S--RKWISFEMKPEYVAASAFRFLD 296 (323)
T ss_dssp HHHHHHHHHH---CCTTCEEEETTCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHHHHHh---CCCCCEEEECCCCCCHHHHHHHHc-C--CCEEEEeCCHHHHHHHHHHHHh
Confidence 3556666543 678899999999999988888776 3 7999999999999999988754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0038 Score=50.45 Aligned_cols=94 Identities=18% Similarity=0.122 Sum_probs=65.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---C---C
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---G---W 138 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~---~ 138 (215)
+ ++.+||-+|+|. |..+..+++..|. .+|++++.++...+.+++ .+.. .++..+..+ . .
T Consensus 166 ~-~g~~VlV~GaG~vG~~~~q~a~~~Ga-~~Vi~~~~~~~~~~~~~~----~Ga~--------~~~~~~~~~~~~~v~~~ 231 (348)
T 2d8a_A 166 I-SGKSVLITGAGPLGLLGIAVAKASGA-YPVIVSEPSDFRRELAKK----VGAD--------YVINPFEEDVVKEVMDI 231 (348)
T ss_dssp C-TTCCEEEECCSHHHHHHHHHHHHTTC-CSEEEECSCHHHHHHHHH----HTCS--------EEECTTTSCHHHHHHHH
T ss_pred C-CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----hCCC--------EEECCCCcCHHHHHHHH
Confidence 5 889999999975 8888888888752 389999999988887763 2211 111111111 0 0
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+|+.........+.+.+.|+++|.++..
T Consensus 232 ~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 232 TDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp TTTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred cCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 11136999998877666778889999999998874
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0068 Score=46.97 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=67.4
Q ss_pred CCCCEEEEEcCCccHHHHHHHHH---h---CCCCeEEEEe-----cChH-------------------HHHHHHHHHHhh
Q 028002 67 KPGMHALDIGSGTGYLTACFALM---V---GPQGRAVGVE-----HIPE-------------------LVVSSIQNIEKS 116 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~---~---~~~~~v~~~D-----~s~~-------------------~~~~a~~~~~~~ 116 (215)
.-...|+|+|+-.|..+..++.. + ++..+++++| ..+. ..+...+.+...
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 34569999999999988876643 2 3458999999 2211 011122211111
Q ss_pred cccCccc--CCCeEEEeCCCCCCCC------CCCCccEEEEccCCC-C---chHHHHHhcCCCcEEEEE
Q 028002 117 AAAPLLK--EGSLSVHVGDGRKGWP------EFAPYDAIHVGAAAP-E---IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 117 ~~~~~~~--~~~v~~~~~d~~~~~~------~~~~~D~V~~~~~~~-~---~~~~~~~~Lk~gG~lv~~ 173 (215)
.....++ .++++++.+++.+.++ +..+||+|+.+.... . .++.+...|+|||++++-
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~D 216 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFD 216 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEc
Confidence 0000111 2789999999876543 224799999999752 1 345678899999999983
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.011 Score=47.68 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=66.3
Q ss_pred cCCCCCEEEEEcC--CccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---C--
Q 028002 65 NLKPGMHALDIGS--GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---G-- 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~-- 137 (215)
.++++.+||..|+ |.|..+..+++..| .+|++++.++..++.+++ .+. .. ++.....+ .
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~~----~ga------~~--~~d~~~~~~~~~~~ 228 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFG--ARVIATAGSEDKLRRAKA----LGA------DE--TVNYTHPDWPKEVR 228 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----HTC------SE--EEETTSTTHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHh----cCC------CE--EEcCCcccHHHHHH
Confidence 3678899999998 45888888888765 589999999988887753 221 11 11111000 0
Q ss_pred -CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 -~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+.... ....+.+.+.|+++|.++..
T Consensus 229 ~~~~~~~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 229 RLTGGKGADKVVDHTG-ALYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp HHTTTTCEEEEEESSC-SSSHHHHHHHEEEEEEEEES
T ss_pred HHhCCCCceEEEECCC-HHHHHHHHHhhccCCEEEEE
Confidence 011247999998888 77888999999999998874
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0051 Score=50.06 Aligned_cols=91 Identities=14% Similarity=0.082 Sum_probs=62.8
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh---HHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCC
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP---ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAP 143 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~---~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~ 143 (215)
+.+||-+|+|. |..+..+++..| .+|++++.++ ...+.+++ .+. +.++ ..+..+... ..+.
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~~~~----~ga------~~v~--~~~~~~~~~~~~~~ 246 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYG--LEVWMANRREPTEVEQTVIEE----TKT------NYYN--SSNGYDKLKDSVGK 246 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHT--CEEEEEESSCCCHHHHHHHHH----HTC------EEEE--CTTCSHHHHHHHCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCccchHHHHHHHH----hCC------ceec--hHHHHHHHHHhCCC
Confidence 89999999965 777888888776 4899999988 77666653 221 1111 101110000 0146
Q ss_pred ccEEEEccCCCCch-HHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAAAPEIP-QALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~-~~~~~~Lk~gG~lv~~ 173 (215)
+|+|+......... +.+.+.|+++|.+++.
T Consensus 247 ~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 247 FDVIIDATGADVNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EEEEEECCCCCTHHHHHHGGGEEEEEEEEEC
T ss_pred CCEEEECCCChHHHHHHHHHHHhcCCEEEEE
Confidence 99999988877777 8899999999998875
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0037 Score=49.91 Aligned_cols=93 Identities=19% Similarity=0.039 Sum_probs=61.8
Q ss_pred cCCCCCEEEEEc-CCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC-CCCCC
Q 028002 65 NLKPGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-GWPEF 141 (215)
Q Consensus 65 ~~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~ 141 (215)
.++++.+||-+| +|. |..+..+++..| .++++++ ++...+.+++ .+.. .++.....+ .....
T Consensus 149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~G--a~vi~~~-~~~~~~~~~~----lGa~--------~~i~~~~~~~~~~~~ 213 (321)
T 3tqh_A 149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKG--TTVITTA-SKRNHAFLKA----LGAE--------QCINYHEEDFLLAIS 213 (321)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEE-CHHHHHHHHH----HTCS--------EEEETTTSCHHHHCC
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEe-ccchHHHHHH----cCCC--------EEEeCCCcchhhhhc
Confidence 478899999997 776 999999999876 5788887 4444555543 3321 122211111 00111
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+....-... ..+.++|+++|.++..
T Consensus 214 ~g~D~v~d~~g~~~~-~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 214 TPVDAVIDLVGGDVG-IQSIDCLKETGCIVSV 244 (321)
T ss_dssp SCEEEEEESSCHHHH-HHHGGGEEEEEEEEEC
T ss_pred cCCCEEEECCCcHHH-HHHHHhccCCCEEEEe
Confidence 469999987665544 7788999999999875
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.003 Score=50.92 Aligned_cols=95 Identities=19% Similarity=0.116 Sum_probs=64.6
Q ss_pred cCCCCCEEEEEcCC--ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------
Q 028002 65 NLKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------ 136 (215)
.++++.+||-+|+| .|..+..+++..| .+|++++.++..++.+++ .+. + .++.....+
T Consensus 141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----lga------~--~~~~~~~~~~~~~~~ 206 (340)
T 3gms_A 141 NLQRNDVLLVNACGSAIGHLFAQLSQILN--FRLIAVTRNNKHTEELLR----LGA------A--YVIDTSTAPLYETVM 206 (340)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH----HTC------S--EEEETTTSCHHHHHH
T ss_pred ccCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----CCC------c--EEEeCCcccHHHHHH
Confidence 46889999999997 4788888888876 589999999988887765 222 1 111111111
Q ss_pred CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 137 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
.......+|+|+.+........ ..+.|+++|.+++.-
T Consensus 207 ~~~~~~g~Dvvid~~g~~~~~~-~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 207 ELTNGIGADAAIDSIGGPDGNE-LAFSLRPNGHFLTIG 243 (340)
T ss_dssp HHTTTSCEEEEEESSCHHHHHH-HHHTEEEEEEEEECC
T ss_pred HHhCCCCCcEEEECCCChhHHH-HHHHhcCCCEEEEEe
Confidence 0112247999998776554434 458999999998753
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0056 Score=45.13 Aligned_cols=95 Identities=20% Similarity=0.164 Sum_probs=61.3
Q ss_pred cCCCCCEEEEEcC--CccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC--CC---
Q 028002 65 NLKPGMHALDIGS--GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--KG--- 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~--~~--- 137 (215)
.++++.+||..|+ |.|.....+++..| .+|++++.++...+.+++ .+. . ..+...+.. +.
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~----~g~------~-~~~d~~~~~~~~~~~~ 101 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSR----LGV------E-YVGDSRSVDFADEILE 101 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHT----TCC------S-EEEETTCSTHHHHHHH
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCC------C-EEeeCCcHHHHHHHHH
Confidence 3678899999994 34777777777655 589999999887766542 221 1 111111110 00
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+.+.. ....+.+.+.|+++|++++.
T Consensus 102 ~~~~~~~D~vi~~~g-~~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 102 LTDGYGVDVVLNSLA-GEAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp HTTTCCEEEEEECCC-THHHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCCeEEEECCc-hHHHHHHHHHhccCCEEEEE
Confidence 011146999997765 45667889999999998874
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0079 Score=48.48 Aligned_cols=94 Identities=19% Similarity=0.167 Sum_probs=64.7
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC--CCC---C
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD--GRK---G 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d--~~~---~ 137 (215)
.++++.+||-.|+ | .|..+..+++..| .+|++++.++...+.+++. +. +. ++..+ ..+ .
T Consensus 156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~----ga------~~--v~~~~~~~~~~v~~ 221 (342)
T 4eye_A 156 QLRAGETVLVLGAAGGIGTAAIQIAKGMG--AKVIAVVNRTAATEFVKSV----GA------DI--VLPLEEGWAKAVRE 221 (342)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHHH----TC------SE--EEESSTTHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhc----CC------cE--EecCchhHHHHHHH
Confidence 3678899999997 4 3888889998876 5899999999888877652 22 11 22221 110 0
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+...... ..+.+.+.|+++|.+++.
T Consensus 222 ~~~~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 222 ATGGAGVDMVVDPIGGP-AFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp HTTTSCEEEEEESCC---CHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCceEEEECCchh-HHHHHHHhhcCCCEEEEE
Confidence 11223699999877654 567889999999999875
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.008 Score=50.47 Aligned_cols=94 Identities=19% Similarity=0.167 Sum_probs=65.5
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC-----
Q 028002 65 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----- 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~----- 137 (215)
.++++.+||-+|+ |. |..+..+++..| .++++++.++..++.+++ .+.. .++.....+.
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~G--a~vi~~~~~~~~~~~~~~----lGa~--------~vi~~~~~d~~~~~~ 290 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAGG--ANPICVVSSPQKAEICRA----MGAE--------AIIDRNAEGYRFWKD 290 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----HTCC--------EEEETTTTTCCSEEE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcC--CeEEEEECCHHHHHHHHh----hCCc--------EEEecCcCccccccc
Confidence 4678999999998 54 889999998876 578889889988887754 2221 1111111000
Q ss_pred ------------------CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 ------------------WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ------------------~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+..... .....+.++|+++|.+++.
T Consensus 291 ~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 291 ENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGR-ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp TTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCH-HHHHHHHHHEEEEEEEEES
T ss_pred ccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCc-hhHHHHHHHhhCCcEEEEE
Confidence 0112479999877665 5677889999999999874
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0036 Score=50.07 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=62.7
Q ss_pred CCCCC-EEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCC
Q 028002 66 LKPGM-HALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA 142 (215)
Q Consensus 66 ~~~~~-~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 142 (215)
++++. +||-.|+ |. |..+..+++..| .++++++.++..++.+++ .+...-+.+.... .+..... ..+
T Consensus 146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~---~~~~~~~-~~~ 215 (328)
T 1xa0_A 146 LTPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLRV----LGAKEVLAREDVM---AERIRPL-DKQ 215 (328)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHHH----TTCSEEEECC------------C-CSC
T ss_pred CCCCCceEEEecCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH----cCCcEEEecCCcH---HHHHHHh-cCC
Confidence 56665 8999997 54 888899998876 579999999887777754 2321001111100 0000111 124
Q ss_pred CccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 143 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+|+|+..... ...+.+.+.|+++|++++.
T Consensus 216 ~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 216 RWAAAVDPVGG-RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp CEEEEEECSTT-TTHHHHHHTEEEEEEEEEC
T ss_pred cccEEEECCcH-HHHHHHHHhhccCCEEEEE
Confidence 69999887765 4677889999999998874
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0013 Score=53.19 Aligned_cols=91 Identities=19% Similarity=0.144 Sum_probs=64.4
Q ss_pred CCCEEEEE-cCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC--CCC---CCCC
Q 028002 68 PGMHALDI-GSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD--GRK---GWPE 140 (215)
Q Consensus 68 ~~~~vLdi-G~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d--~~~---~~~~ 140 (215)
++.+||-. |+|. |..+..+++..| .+|++++.++..++.+++ .+.. . ++..+ ..+ .. .
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~------~--vi~~~~~~~~~~~~~-~ 214 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYG--LRVITTASRNETIEWTKK----MGAD------I--VLNHKESLLNQFKTQ-G 214 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEECCSHHHHHHHHH----HTCS------E--EECTTSCHHHHHHHH-T
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCc------E--EEECCccHHHHHHHh-C
Confidence 78999999 5665 888889998876 589999999988888765 2221 1 11111 000 01 2
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+|+|+.........+.+.++|+++|.++..
T Consensus 215 ~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 215 IELVDYVFCTFNTDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp CCCEEEEEESSCHHHHHHHHHHHEEEEEEEEES
T ss_pred CCCccEEEECCCchHHHHHHHHHhccCCEEEEE
Confidence 247999998776666668889999999999764
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0023 Score=51.13 Aligned_cols=89 Identities=11% Similarity=0.061 Sum_probs=61.4
Q ss_pred EEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC--CCCCCCCCccE
Q 028002 71 HALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--KGWPEFAPYDA 146 (215)
Q Consensus 71 ~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~~D~ 146 (215)
+||-.|+ |. |..+..+++..| .+|++++.++...+.+++ .+.. .+ +...+.. ... ..+.+|+
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~G--a~Vi~~~~~~~~~~~~~~----lGa~------~v-i~~~~~~~~~~~-~~~~~d~ 214 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLG--YQVAAVSGRESTHGYLKS----LGAN------RI-LSRDEFAESRPL-EKQLWAG 214 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHH----HTCS------EE-EEGGGSSCCCSS-CCCCEEE
T ss_pred eEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCC------EE-EecCCHHHHHhh-cCCCccE
Confidence 4999997 54 899999999876 589999999998888865 2221 11 1111111 111 1257999
Q ss_pred EEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 147 IHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 147 V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
|+.....+ ..+.+.+.|+++|+++..-
T Consensus 215 v~d~~g~~-~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 215 AIDTVGDK-VLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp EEESSCHH-HHHHHHHTEEEEEEEEECC
T ss_pred EEECCCcH-HHHHHHHHHhcCCEEEEEe
Confidence 88766543 6788899999999998753
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.011 Score=46.88 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=54.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCe-EEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC----
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE---- 140 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---- 140 (215)
.+...+++|+.||.|.++..+.+. |.... +.++|+++.+.+.-+.++ +...+..+|+.+....
T Consensus 13 ~~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~-----------~~~~~~~~DI~~i~~~~i~~ 80 (295)
T 2qrv_A 13 KRKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH-----------QGKIMYVGDVRSVTQKHIQE 80 (295)
T ss_dssp CCCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT-----------TTCEEEECCGGGCCHHHHHH
T ss_pred cCCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC-----------CCCceeCCChHHccHHHhcc
Confidence 345679999999999999998876 44333 699999999877666553 2335667787664321
Q ss_pred CCCccEEEEccCC
Q 028002 141 FAPYDAIHVGAAA 153 (215)
Q Consensus 141 ~~~~D~V~~~~~~ 153 (215)
.+.+|+++...++
T Consensus 81 ~~~~Dll~ggpPC 93 (295)
T 2qrv_A 81 WGPFDLVIGGSPC 93 (295)
T ss_dssp TCCCSEEEECCCC
T ss_pred cCCcCEEEecCCC
Confidence 1468999888765
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0057 Score=49.37 Aligned_cols=96 Identities=21% Similarity=0.234 Sum_probs=65.1
Q ss_pred cCCCCCEEEEEcCC--ccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC-----
Q 028002 65 NLKPGMHALDIGSG--TGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----- 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~G--~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~----- 136 (215)
.++++.+||..|+| .|..+..+++.. | .+|+++|.++...+.+++ + +. + ..+...+...
T Consensus 167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~G--a~Vi~~~~~~~~~~~~~~-~---g~------~-~~~~~~~~~~~~~~~ 233 (347)
T 1jvb_A 167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSG--ATIIGVDVREEAVEAAKR-A---GA------D-YVINASMQDPLAEIR 233 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTC--CEEEEEESSHHHHHHHHH-H---TC------S-EEEETTTSCHHHHHH
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHH-h---CC------C-EEecCCCccHHHHHH
Confidence 47889999999998 367777888776 5 589999999988887754 2 21 1 1111111100
Q ss_pred CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 137 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+.+|+|+.+.......+.+.+.|+++|.++..
T Consensus 234 ~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 234 RITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp HHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEEC
T ss_pred HHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 0011047999998877655667788999999998874
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.011 Score=48.16 Aligned_cols=94 Identities=13% Similarity=0.079 Sum_probs=64.8
Q ss_pred cCCCCCEEEEEc-CCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CC-
Q 028002 65 NLKPGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GW- 138 (215)
Q Consensus 65 ~~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~- 138 (215)
.++++.+||-.| +|. |..+..+++..| .+|++++.++..++.+++ .+. + .++..+..+ ..
T Consensus 160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~G--a~Vi~~~~~~~~~~~~~~----~Ga------~--~~~~~~~~~~~~~~~ 225 (362)
T 2c0c_A 160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAK--CHVIGTCSSDEKSAFLKS----LGC------D--RPINYKTEPVGTVLK 225 (362)
T ss_dssp CCCTTCEEEETTTTBTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTC------S--EEEETTTSCHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHH----cCC------c--EEEecCChhHHHHHH
Confidence 378899999999 454 888989998875 589999999888877764 222 1 111111111 00
Q ss_pred -CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 -PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 -~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+|+..... ...+.+.+.|+++|.+++.
T Consensus 226 ~~~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 226 QEYPEGVDVVYESVGG-AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp HHCTTCEEEEEECSCT-HHHHHHHHHEEEEEEEEEC
T ss_pred HhcCCCCCEEEECCCH-HHHHHHHHHHhcCCEEEEE
Confidence 011469999987665 5667889999999998874
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0027 Score=50.21 Aligned_cols=90 Identities=21% Similarity=0.298 Sum_probs=63.1
Q ss_pred CCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe---CCCCCCCCC
Q 028002 66 LKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV---GDGRKGWPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~---~d~~~~~~~ 140 (215)
++++.+||-.|+ | .|..+..+++..| .+|++++.++...+.+++ .+. +.+ +.. .+..+..
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----~ga------~~~-~~~~~~~~~~~~~-- 187 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLA----LGA------EEA-ATYAEVPERAKAW-- 187 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHH----TTC------SEE-EEGGGHHHHHHHT--
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHh----cCC------CEE-EECCcchhHHHHh--
Confidence 678899999998 4 4888888888875 589999999888777753 221 111 111 1111111
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+. ... ...+.+.+.|+++|.++..
T Consensus 188 -~~~d~vid-~g~-~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 188 -GGLDLVLE-VRG-KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp -TSEEEEEE-CSC-TTHHHHHTTEEEEEEEEEC
T ss_pred -cCceEEEE-CCH-HHHHHHHHhhccCCEEEEE
Confidence 46999998 655 5778889999999998864
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.016 Score=46.27 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=64.3
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC--CC---
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--KG--- 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~--~~--- 137 (215)
.++++.+||..|+ | .|.....+++..| .+|++++.++...+.+++ + +. ...+...+.. +.
T Consensus 137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--~~V~~~~~~~~~~~~~~~-~---g~-------~~~~~~~~~~~~~~~~~ 203 (327)
T 1qor_A 137 EIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALK-A---GA-------WQVINYREEDLVERLKE 203 (327)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHH-H---TC-------SEEEETTTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-c---CC-------CEEEECCCccHHHHHHH
Confidence 3678899999993 3 4777778887766 589999999888777764 2 21 1111111100 00
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+.+.. ....+.+.+.|+++|.+++.
T Consensus 204 ~~~~~~~D~vi~~~g-~~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 204 ITGGKKVRVVYDSVG-RDTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp HTTTCCEEEEEECSC-GGGHHHHHHTEEEEEEEEEC
T ss_pred HhCCCCceEEEECCc-hHHHHHHHHHhcCCCEEEEE
Confidence 011246999998877 67778899999999998874
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0021 Score=52.52 Aligned_cols=93 Identities=16% Similarity=0.061 Sum_probs=60.1
Q ss_pred CCCCCEEEEEc-CCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC
Q 028002 66 LKPGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~ 140 (215)
++++.+||-.| +|. |..+..+++..| .+|++++ ++...+.+++ .+. +. ++..+..+ ....
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~G--a~Vi~~~-~~~~~~~~~~----lGa------~~--v~~~~~~~~~~~~~~ 245 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWD--AHVTAVC-SQDASELVRK----LGA------DD--VIDYKSGSVEEQLKS 245 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEE-CGGGHHHHHH----TTC------SE--EEETTSSCHHHHHHT
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCC--CEEEEEe-ChHHHHHHHH----cCC------CE--EEECCchHHHHHHhh
Confidence 66789999999 565 888889998876 5788888 6666665532 232 11 11111100 0111
Q ss_pred CCCccEEEEccCCC-CchHHHHHhcCCCcEEEEE
Q 028002 141 FAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~-~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+|+|+...... .......+.|+++|.++..
T Consensus 246 ~~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 246 LKPFDFILDNVGGSTETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp SCCBSEEEESSCTTHHHHGGGGBCSSSCCEEEES
T ss_pred cCCCCEEEECCCChhhhhHHHHHhhcCCcEEEEe
Confidence 14699999887665 3345667889999999874
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0029 Score=51.04 Aligned_cols=94 Identities=15% Similarity=0.097 Sum_probs=64.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCC-
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP- 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~- 139 (215)
.+ ++.+||-+|+|. |..+..+++..|. .+|++++.++..++.+++. . +. ++.....+ ...
T Consensus 162 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga-~~Vi~~~~~~~~~~~~~~l--a---------~~--v~~~~~~~~~~~~~~ 226 (343)
T 2dq4_A 162 GV-SGKSVLITGAGPIGLMAAMVVRASGA-GPILVSDPNPYRLAFARPY--A---------DR--LVNPLEEDLLEVVRR 226 (343)
T ss_dssp CC-TTSCEEEECCSHHHHHHHHHHHHTTC-CSEEEECSCHHHHGGGTTT--C---------SE--EECTTTSCHHHHHHH
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh--H---------Hh--ccCcCccCHHHHHHH
Confidence 35 889999999976 8888888888753 3899999998877766432 1 11 11111000 000
Q ss_pred -CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 -EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 -~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
....+|+|+.........+.+.+.|+++|.+++.
T Consensus 227 ~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 227 VTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp HHSSCEEEEEECSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred hcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 0246999998877656778889999999998874
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.011 Score=47.60 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=64.2
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC---CCCCCC
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD---GRKGWP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d---~~~~~~ 139 (215)
.++++.+||..|+ | .|..+..+++..| .+|++++.++..++.+++.+ +. . ..+-..+ ......
T Consensus 152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--~~V~~~~~~~~~~~~~~~~~---g~------~-~~~d~~~~~~~~~~~~ 219 (345)
T 2j3h_A 152 SPKEGETVYVSAASGAVGQLVGQLAKMMG--CYVVGSAGSKEKVDLLKTKF---GF------D-DAFNYKEESDLTAALK 219 (345)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTS---CC------S-EEEETTSCSCSHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHc---CC------c-eEEecCCHHHHHHHHH
Confidence 3678899999997 4 4888888888765 58999999998877765322 21 1 1111111 100000
Q ss_pred --CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 --EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 --~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+.+|+|+.+... ...+.+.+.|+++|.+++.
T Consensus 220 ~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 220 RCFPNGIDIYFENVGG-KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp HHCTTCEEEEEESSCH-HHHHHHHTTEEEEEEEEEC
T ss_pred HHhCCCCcEEEECCCH-HHHHHHHHHHhcCCEEEEE
Confidence 11469999988765 4677889999999999874
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0073 Score=48.45 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=64.4
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CC-
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GW- 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~- 138 (215)
.++++.+||-.|+ | .|..+..+++..| .+|++++.++...+.+.+.+ +. . .++.....+ ..
T Consensus 146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~~---g~------~--~~~~~~~~~~~~~~~ 212 (336)
T 4b7c_A 146 QPKNGETVVISGAAGAVGSVAGQIARLKG--CRVVGIAGGAEKCRFLVEEL---GF------D--GAIDYKNEDLAAGLK 212 (336)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHTT---CC------S--EEEETTTSCHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHc---CC------C--EEEECCCHHHHHHHH
Confidence 4788999999998 3 4888888888765 58999999998877763322 21 1 111111111 00
Q ss_pred -CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 -PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 -~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+.+|+|+.+... ...+.+.+.|+++|.+++.
T Consensus 213 ~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 213 RECPKGIDVFFDNVGG-EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp HHCTTCEEEEEESSCH-HHHHHHHTTEEEEEEEEEC
T ss_pred HhcCCCceEEEECCCc-chHHHHHHHHhhCCEEEEE
Confidence 012479999887664 4667888999999999874
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.022 Score=46.02 Aligned_cols=94 Identities=14% Similarity=0.056 Sum_probs=63.2
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------ 136 (215)
.++++.+||..|+ | .|..+..+++..| .+|++++.++..++.+++ + +. + . .+..+..+
T Consensus 159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~-~---g~------~-~-~~~~~~~~~~~~~~ 224 (354)
T 2j8z_A 159 NVQAGDYVLIHAGLSGVGTAAIQLTRMAG--AIPLVTAGSQKKLQMAEK-L---GA------A-A-GFNYKKEDFSEATL 224 (354)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH-H---TC------S-E-EEETTTSCHHHHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-c---CC------c-E-EEecCChHHHHHHH
Confidence 3678899999984 3 4778888887765 589999999988877743 2 21 1 1 11111111
Q ss_pred CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 137 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.......+|+|+.+.... ....+.+.|+++|.+++.
T Consensus 225 ~~~~~~~~d~vi~~~G~~-~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 225 KFTKGAGVNLILDCIGGS-YWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp HHTTTSCEEEEEESSCGG-GHHHHHHHEEEEEEEEEC
T ss_pred HHhcCCCceEEEECCCch-HHHHHHHhccCCCEEEEE
Confidence 001114699999887664 567788999999998874
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.016 Score=46.24 Aligned_cols=95 Identities=17% Similarity=0.138 Sum_probs=63.4
Q ss_pred CCCCC-EEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC--CCCCCCCC
Q 028002 66 LKPGM-HALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRKGWPE 140 (215)
Q Consensus 66 ~~~~~-~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~--d~~~~~~~ 140 (215)
++++. +||-.|+ |. |..+..+++..| .++++++.++..++.+++ .+.. .-++.... +......
T Consensus 147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~G--a~vi~~~~~~~~~~~~~~----lGa~-----~v~~~~~~~~~~~~~~~- 214 (330)
T 1tt7_A 147 LSPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQ----LGAS-----EVISREDVYDGTLKALS- 214 (330)
T ss_dssp CCGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHH----HTCS-----EEEEHHHHCSSCCCSSC-
T ss_pred cCCCCceEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCc-----EEEECCCchHHHHHHhh-
Confidence 56665 8999997 54 888889998876 579999998887777754 2221 01111011 1111111
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+.+|+|+..... .....+.+.|+++|++++.
T Consensus 215 ~~~~d~vid~~g~-~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 215 KQQWQGAVDPVGG-KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp CCCEEEEEESCCT-HHHHHHHTTEEEEEEEEEC
T ss_pred cCCccEEEECCcH-HHHHHHHHhhcCCCEEEEE
Confidence 2469999887765 4677889999999999874
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.02 Score=46.32 Aligned_cols=95 Identities=16% Similarity=-0.003 Sum_probs=64.6
Q ss_pred cCCCCCEEEEEc-CCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC---CC
Q 028002 65 NLKPGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~ 139 (215)
.++++.+||-.| +|. |..+..+++..| .+|++++.++..++.+++ .+. + .++.....+. ..
T Consensus 164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----lGa------~--~~~~~~~~~~~~~~~ 229 (353)
T 4dup_A 164 GLTEGESVLIHGGTSGIGTTAIQLARAFG--AEVYATAGSTGKCEACER----LGA------K--RGINYRSEDFAAVIK 229 (353)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----HTC------S--EEEETTTSCHHHHHH
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCC------C--EEEeCCchHHHHHHH
Confidence 367889999994 453 888888888876 589999999998887765 222 1 1111111110 00
Q ss_pred --CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 140 --EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 140 --~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
....+|+|+.+... .....+.+.|+++|.+++..
T Consensus 230 ~~~~~g~Dvvid~~g~-~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 230 AETGQGVDIILDMIGA-AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp HHHSSCEEEEEESCCG-GGHHHHHHTEEEEEEEEECC
T ss_pred HHhCCCceEEEECCCH-HHHHHHHHHhccCCEEEEEE
Confidence 02479999887665 36677889999999988753
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0084 Score=47.60 Aligned_cols=107 Identities=24% Similarity=0.252 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHH---HhCCCC--eEEEEecCh--------H-HHHHHHHHHHhhcccCcccCC--CeEEE
Q 028002 67 KPGMHALDIGSGTGYLTACFAL---MVGPQG--RAVGVEHIP--------E-LVVSSIQNIEKSAAAPLLKEG--SLSVH 130 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~---~~~~~~--~v~~~D~s~--------~-~~~~a~~~~~~~~~~~~~~~~--~v~~~ 130 (215)
++.-+|||+|-|+|........ ..++.. .++.+|..+ . ..+.....+.... .+... .+++.
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p---~~~~~~v~L~l~ 171 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVP---EYEGERLSLKVL 171 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCS---EEECSSEEEEEE
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCc---cccCCcEEEEEE
Confidence 3346899999999987654332 224544 456666432 1 1111222222111 11123 44677
Q ss_pred eCCCCCCCCC--CCCccEEEEccCCC---------CchHHHHHhcCCCcEEEEEeCC
Q 028002 131 VGDGRKGWPE--FAPYDAIHVGAAAP---------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 131 ~~d~~~~~~~--~~~~D~V~~~~~~~---------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.+|+.+.++. ...||+|+.++-.+ .+++.+.++++|||.|..-+..
T Consensus 172 ~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaa 228 (308)
T 3vyw_A 172 LGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSS 228 (308)
T ss_dssp ESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCC
T ss_pred echHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCc
Confidence 8887654332 24799999987432 3557889999999999875443
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.03 Score=44.74 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=64.2
Q ss_pred cCCCCCEEEEEcC--CccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---C--
Q 028002 65 NLKPGMHALDIGS--GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---G-- 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~-- 137 (215)
.++++.+||-.|+ |.|.....+++..| .+|++++.++..++.+++ + +. . . ++..+..+ .
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~~-~---g~------~-~-~~d~~~~~~~~~i~ 207 (333)
T 1wly_A 142 KVKPGDYVLIHAAAGGMGHIMVPWARHLG--ATVIGTVSTEEKAETARK-L---GC------H-H-TINYSTQDFAEVVR 207 (333)
T ss_dssp CCCTTCEEEETTTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH-H---TC------S-E-EEETTTSCHHHHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-c---CC------C-E-EEECCCHHHHHHHH
Confidence 4678899999995 34888888888765 589999999988777754 2 21 1 1 11111111 0
Q ss_pred -CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 -~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+.+... ...+.+.+.|+++|.++..
T Consensus 208 ~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 208 EITGGKGVDVVYDSIGK-DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp HHHTTCCEEEEEECSCT-TTHHHHHHTEEEEEEEEEC
T ss_pred HHhCCCCCeEEEECCcH-HHHHHHHHhhccCCEEEEE
Confidence 0011469999988766 6678889999999998874
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.014 Score=47.13 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=64.3
Q ss_pred cCCCCCEEEEEcC--CccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CC-
Q 028002 65 NLKPGMHALDIGS--GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GW- 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~- 138 (215)
.++++.+||..|+ |.|..+..+++..| .+|++++.++...+.+++ .+. . ..+-..+..+ ..
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--a~V~~~~~~~~~~~~~~~----~g~------~-~~~d~~~~~~~~~~~~ 232 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMG--YRVLGIDGGEGKEELFRS----IGG------E-VFIDFTKEKDIVGAVL 232 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECSTTHHHHHHH----TTC------C-EEEETTTCSCHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CcEEEEcCCHHHHHHHHH----cCC------c-eEEecCccHhHHHHHH
Confidence 3678899999998 34778888887765 589999999887776653 221 1 1111111111 00
Q ss_pred --CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 --PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 --~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.. +.+|+|+.+.......+.+.+.|+++|+++..
T Consensus 233 ~~~~-~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 233 KATD-GGAHGVINVSVSEAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp HHHT-SCEEEEEECSSCHHHHHHHTTSEEEEEEEEEC
T ss_pred HHhC-CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 11 26999998887666778889999999998874
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.013 Score=47.63 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=60.5
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
+.+|+-+|+|. |.....+++.+| .+|+++|.++..++.+++.... .+.....+..+.......+|+|
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~G--a~V~v~dr~~~r~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~DvV 234 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS----------RVELLYSNSAEIETAVAEADLL 234 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG----------GSEEEECCHHHHHHHHHTCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhhCc----------eeEeeeCCHHHHHHHHcCCCEE
Confidence 47999999986 777777777765 4899999999888877654422 1212211100000000258999
Q ss_pred EEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028002 148 HVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 148 ~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
+....... +.+...+.+++||.++-..
T Consensus 235 I~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 235 IGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp EECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred EECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 87765433 2567788999999887643
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.025 Score=45.52 Aligned_cols=94 Identities=16% Similarity=0.117 Sum_probs=62.9
Q ss_pred cCCCCCEEEEEc-CCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC---CC
Q 028002 65 NLKPGMHALDIG-SGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WP 139 (215)
Q Consensus 65 ~~~~~~~vLdiG-~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~ 139 (215)
.++++.+||-+| +|. |..+..+++..| .+|+++ .++..++.+++ .+. +.++ ...+..+. ..
T Consensus 147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~G--a~Vi~~-~~~~~~~~~~~----lGa------~~i~-~~~~~~~~~~~~~ 212 (343)
T 3gaz_A 147 QVQDGQTVLIQGGGGGVGHVAIQIALARG--ARVFAT-ARGSDLEYVRD----LGA------TPID-ASREPEDYAAEHT 212 (343)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEE-ECHHHHHHHHH----HTS------EEEE-TTSCHHHHHHHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCC--CEEEEE-eCHHHHHHHHH----cCC------CEec-cCCCHHHHHHHHh
Confidence 367889999999 454 888889998876 589999 78887777654 222 1111 00111000 01
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
....+|+|+....- ...+.+.+.|+++|.++..
T Consensus 213 ~~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 213 AGQGFDLVYDTLGG-PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp TTSCEEEEEESSCT-HHHHHHHHHEEEEEEEEES
T ss_pred cCCCceEEEECCCc-HHHHHHHHHHhcCCeEEEE
Confidence 12479999887663 5667888999999999874
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.02 Score=48.64 Aligned_cols=88 Identities=18% Similarity=0.088 Sum_probs=62.5
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
..++.+|+-+|+|. |......++.+| .+|+++|.++...+.+++ .+ +++ .+..+.. ...
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~G--a~Viv~d~~~~~~~~A~~----~G---------a~~--~~l~e~l---~~a 330 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQG--ARVSVTEIDPINALQAMM----EG---------FDV--VTVEEAI---GDA 330 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH----TT---------CEE--CCHHHHG---GGC
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cC---------CEE--ecHHHHH---hCC
Confidence 56789999999997 777777777765 589999999987766543 12 121 1111111 358
Q ss_pred cEEEEccCCCCchH-HHHHhcCCCcEEEEE
Q 028002 145 DAIHVGAAAPEIPQ-ALIDQLKPGGRMVIP 173 (215)
Q Consensus 145 D~V~~~~~~~~~~~-~~~~~Lk~gG~lv~~ 173 (215)
|+|+......+++. ...+.+|+||+++..
T Consensus 331 DvVi~atgt~~~i~~~~l~~mk~ggilvnv 360 (494)
T 3ce6_A 331 DIVVTATGNKDIIMLEHIKAMKDHAILGNI 360 (494)
T ss_dssp SEEEECSSSSCSBCHHHHHHSCTTCEEEEC
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCcEEEEe
Confidence 99988877766654 788999999998764
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.019 Score=45.88 Aligned_cols=71 Identities=25% Similarity=0.172 Sum_probs=52.7
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccEEE
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAIH 148 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~V~ 148 (215)
++|+|+.||.|.++..+.+. |- .-+.++|+++.+++.-+.++ .-.++.+|+.+... ....+|+++
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G~-~~v~a~e~d~~a~~ty~~N~------------~~~~~~~DI~~i~~~~~~~~D~l~ 66 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-GF-RIICANEYDKSIWKTYESNH------------SAKLIKGDISKISSDEFPKCDGII 66 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-TC-EEEEEEECCTTTHHHHHHHC------------CSEEEESCGGGCCGGGSCCCSEEE
T ss_pred CeEEEeCcCccHHHHHHHHC-CC-EEEEEEeCCHHHHHHHHHHC------------CCCcccCChhhCCHhhCCcccEEE
Confidence 47999999999999998776 44 56789999998877766553 22567788776433 224689998
Q ss_pred EccCCC
Q 028002 149 VGAAAP 154 (215)
Q Consensus 149 ~~~~~~ 154 (215)
..++++
T Consensus 67 ggpPCQ 72 (331)
T 3ubt_Y 67 GGPPSQ 72 (331)
T ss_dssp CCCCGG
T ss_pred ecCCCC
Confidence 887763
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.035 Score=45.20 Aligned_cols=92 Identities=13% Similarity=-0.004 Sum_probs=62.1
Q ss_pred CCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CC--C
Q 028002 67 KPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GW--P 139 (215)
Q Consensus 67 ~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~--~ 139 (215)
.++.+||-+|+ | .|..+..+++..| .+++++. ++...+.+++ .+.. .++.....+ .. .
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~G--a~Vi~~~-~~~~~~~~~~----lGa~--------~vi~~~~~~~~~~v~~~ 227 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSG--YIPIATC-SPHNFDLAKS----RGAE--------EVFDYRAPNLAQTIRTY 227 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEE-CGGGHHHHHH----TTCS--------EEEETTSTTHHHHHHHH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCC--CEEEEEe-CHHHHHHHHH----cCCc--------EEEECCCchHHHHHHHH
Confidence 77899999999 4 4899999999876 4788875 7777776653 3321 122211111 00 0
Q ss_pred CCCCccEEEEccCCCCchHHHHHhc-CCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQL-KPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~L-k~gG~lv~~ 173 (215)
..+.+|+|+.........+.+.+.| +++|+++..
T Consensus 228 t~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 228 TKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp TTTCCCEEEESSCSHHHHHHHHHHSCTTCEEEEES
T ss_pred ccCCccEEEECCCchHHHHHHHHHhhcCCCEEEEE
Confidence 1145999998877766778888889 699998874
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0093 Score=48.88 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
++.+|+-+|+|. |......++.+| .+|+++|.++..++.+++.+.. .+.....+..+.......+|+
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~G--a~V~~~d~~~~~l~~~~~~~g~----------~~~~~~~~~~~l~~~l~~aDv 234 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMG--ATVTVLDINIDKLRQLDAEFCG----------RIHTRYSSAYELEGAVKRADL 234 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTTT----------SSEEEECCHHHHHHHHHHCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHhcCC----------eeEeccCCHHHHHHHHcCCCE
Confidence 468999999986 777777777765 4899999999887776543311 111111110000000025799
Q ss_pred EEEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028002 147 IHVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 147 V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
|+.....+. +.+...+.+++||+++-..
T Consensus 235 Vi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 235 VIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp EEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred EEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 987553332 2577889999999887654
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0036 Score=50.84 Aligned_cols=100 Identities=10% Similarity=0.077 Sum_probs=58.8
Q ss_pred cCCCC-CEEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe-EEEe---CCCCCC
Q 028002 65 NLKPG-MHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHV---GDGRKG 137 (215)
Q Consensus 65 ~~~~~-~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v-~~~~---~d~~~~ 137 (215)
.++++ .+||-.|+ |. |..+..+++..| .+++++..+...++..++.+.+.+.. .+ +... .++.+.
T Consensus 163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~~~~lGa~------~vi~~~~~~~~~~~~~ 234 (364)
T 1gu7_A 163 KLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKELGAT------QVITEDQNNSREFGPT 234 (364)
T ss_dssp CCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHHHTCS------EEEEHHHHHCGGGHHH
T ss_pred ccCCCCcEEEECCCCcHHHHHHHHHHHHCC--CEEEEEecCccccHHHHHHHHhcCCe------EEEecCccchHHHHHH
Confidence 36788 99999997 54 889999999876 46777764443211111122233321 11 1100 111111
Q ss_pred CC-----CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 WP-----EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~-----~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.. ....+|+|+......... .+.++|+++|+++..
T Consensus 235 i~~~t~~~~~g~Dvvid~~G~~~~~-~~~~~l~~~G~~v~~ 274 (364)
T 1gu7_A 235 IKEWIKQSGGEAKLALNCVGGKSST-GIARKLNNNGLMLTY 274 (364)
T ss_dssp HHHHHHHHTCCEEEEEESSCHHHHH-HHHHTSCTTCEEEEC
T ss_pred HHHHhhccCCCceEEEECCCchhHH-HHHHHhccCCEEEEe
Confidence 10 124699999877655544 678999999998874
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.017 Score=46.23 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=62.1
Q ss_pred cCCCCCEEEEEcC--CccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------
Q 028002 65 NLKPGMHALDIGS--GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 136 (215)
Q Consensus 65 ~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------ 136 (215)
.++++.+||..|+ |.|..+..+++..| .+|++++.++..++.+++ + +. ...+-..+..+
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~~-~---g~-------~~~~d~~~~~~~~~~~~ 208 (333)
T 1v3u_A 142 GVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQ-I---GF-------DAAFNYKTVNSLEEALK 208 (333)
T ss_dssp CCCSSCEEEEESTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH-T---TC-------SEEEETTSCSCHHHHHH
T ss_pred CCCCCCEEEEecCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHh-c---CC-------cEEEecCCHHHHHHHHH
Confidence 3678899999998 34777777777755 589999999888777632 2 21 11111111011
Q ss_pred CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 137 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.... +.+|+++.+... ...+.+.+.|+++|++++.
T Consensus 209 ~~~~-~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 209 KASP-DGYDCYFDNVGG-EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HHCT-TCEEEEEESSCH-HHHHHHHTTEEEEEEEEEC
T ss_pred HHhC-CCCeEEEECCCh-HHHHHHHHHHhcCCEEEEE
Confidence 0011 479999988765 3467788999999999874
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.016 Score=46.61 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=52.5
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC---CCCcc
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE---FAPYD 145 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~D 145 (215)
.+++|+.||.|.++..+... |.. ..+.++|+++.+.+.-+.++. ...+..+|+.+.... ...+|
T Consensus 4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~-----------~~~~~~~DI~~~~~~~~~~~~~D 71 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFP-----------ETNLLNRNIQQLTPQVIKKWNVD 71 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT-----------TSCEECCCGGGCCHHHHHHTTCC
T ss_pred CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCC-----------CCceeccccccCCHHHhccCCCC
Confidence 47999999999999999877 432 458899999998887766642 233556676654321 13689
Q ss_pred EEEEccCCC
Q 028002 146 AIHVGAAAP 154 (215)
Q Consensus 146 ~V~~~~~~~ 154 (215)
+++..++++
T Consensus 72 ~l~ggpPCQ 80 (333)
T 4h0n_A 72 TILMSPPCQ 80 (333)
T ss_dssp EEEECCCCC
T ss_pred EEEecCCCc
Confidence 999888764
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.029 Score=45.08 Aligned_cols=76 Identities=9% Similarity=0.016 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCC-CCeE-EEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC---CC
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGP-QGRA-VGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE---FA 142 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v-~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~ 142 (215)
...+++|+.||.|.++..+.+. |- ...+ .++|+++.+.+.-+.++.. . +..+|+.+.... ..
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~~----------~--~~~~DI~~~~~~~i~~~ 75 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFKE----------E--VQVKNLDSISIKQIESL 75 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHCC----------C--CBCCCTTTCCHHHHHHT
T ss_pred CCCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCCC----------C--cccCChhhcCHHHhccC
Confidence 3468999999999999999876 42 2346 7999999998887777532 1 455666654321 12
Q ss_pred CccEEEEccCCCCc
Q 028002 143 PYDAIHVGAAAPEI 156 (215)
Q Consensus 143 ~~D~V~~~~~~~~~ 156 (215)
.+|+++..++++.+
T Consensus 76 ~~Dil~ggpPCQ~f 89 (327)
T 3qv2_A 76 NCNTWFMSPPCQPY 89 (327)
T ss_dssp CCCEEEECCCCTTC
T ss_pred CCCEEEecCCccCc
Confidence 68999999888766
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.032 Score=46.62 Aligned_cols=97 Identities=15% Similarity=0.032 Sum_probs=64.5
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC-----
Q 028002 65 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----- 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~----- 137 (215)
.++++.+||-.|+ |. |..+..+++..| .++++++.++..++.+++ .+.. .-++....+....
T Consensus 217 ~~~~g~~VlV~GasG~iG~~a~qla~~~G--a~vi~~~~~~~~~~~~~~----lGa~-----~~i~~~~~~~~~~~~~~~ 285 (447)
T 4a0s_A 217 QMKQGDIVLIWGASGGLGSYAIQFVKNGG--GIPVAVVSSAQKEAAVRA----LGCD-----LVINRAELGITDDIADDP 285 (447)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTCC-----CEEEHHHHTCCTTGGGCH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCCC-----EEEecccccccccccccc
Confidence 4678999999997 54 888888888875 588999999888887753 2321 1111111111000
Q ss_pred -------------C--CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 -------------W--PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 -------------~--~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
. .....+|+|+..... ...+...+.|+++|.++..
T Consensus 286 ~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 286 RRVVETGRKLAKLVVEKAGREPDIVFEHTGR-VTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSEEEECSCH-HHHHHHHHHSCTTCEEEES
T ss_pred cccchhhhHHHHHHHHHhCCCceEEEECCCc-hHHHHHHHHHhcCCEEEEE
Confidence 0 002469999987665 3567788999999999885
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.027 Score=45.52 Aligned_cols=95 Identities=21% Similarity=0.141 Sum_probs=62.7
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC-----
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----- 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~----- 137 (215)
.++++.+||-.|+ | .|..+..+++..| .+|++++.++...+.+++ .+. . .++..+..+.
T Consensus 167 ~~~~g~~vlV~GasggiG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~----~ga------~--~~~d~~~~~~~~~~~ 232 (351)
T 1yb5_A 167 CVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQ----NGA------H--EVFNHREVNYIDKIK 232 (351)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTC------S--EEEETTSTTHHHHHH
T ss_pred CCCCcCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCChhHHHHHHH----cCC------C--EEEeCCCchHHHHHH
Confidence 4678899999997 3 4778888888765 589999999988776543 221 1 1111111110
Q ss_pred -CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 138 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 138 -~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
......+|+|+.+.... ......+.|+++|.+++.-
T Consensus 233 ~~~~~~~~D~vi~~~G~~-~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 233 KYVGEKGIDIIIEMLANV-NLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HHHCTTCEEEEEESCHHH-HHHHHHHHEEEEEEEEECC
T ss_pred HHcCCCCcEEEEECCChH-HHHHHHHhccCCCEEEEEe
Confidence 00113699998876543 4567789999999988753
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.018 Score=46.59 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=57.7
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChH---HHHHHHHHHHhhcccCcccCCCe-EEE---eCCCC
Q 028002 65 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPE---LVVSSIQNIEKSAAAPLLKEGSL-SVH---VGDGR 135 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~---~~~~a~~~~~~~~~~~~~~~~~v-~~~---~~d~~ 135 (215)
.++++.+||-+|+ |. |..+..+++..|. ..+..++.++. ..+.++ +.+.. .+ +.. ..+..
T Consensus 164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~----~lGa~------~vi~~~~~~~~~~~ 232 (357)
T 1zsy_A 164 QLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLK----SLGAE------HVITEEELRRPEMK 232 (357)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHHHH----HTTCS------EEEEHHHHHSGGGG
T ss_pred ccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHHHH----hcCCc------EEEecCcchHHHHH
Confidence 4778999999997 54 8999999998763 34555555443 233333 33321 11 100 01111
Q ss_pred CCCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 136 KGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+.+|+|+....-... ....++|+++|+++..
T Consensus 233 ~~~~~~~~~Dvvid~~g~~~~-~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 233 NFFKDMPQPRLALNCVGGKSS-TELLRQLARGGTMVTY 269 (357)
T ss_dssp GTTSSSCCCSEEEESSCHHHH-HHHHTTSCTTCEEEEC
T ss_pred HHHhCCCCceEEEECCCcHHH-HHHHHhhCCCCEEEEE
Confidence 111111259999877664433 4578999999999875
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0055 Score=49.78 Aligned_cols=93 Identities=14% Similarity=0.086 Sum_probs=62.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC--C---C
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--K---G 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~--~---~ 137 (215)
.++++.+||-+|+|. |..+..+++.. | .+|+++|.++..++.+++ .+.. . ++...-. + .
T Consensus 183 ~~~~g~~VlV~GaG~vG~~avqlak~~~G--a~Vi~~~~~~~~~~~~~~----lGa~------~--vi~~~~~~~~~v~~ 248 (359)
T 1h2b_A 183 TLYPGAYVAIVGVGGLGHIAVQLLKVMTP--ATVIALDVKEEKLKLAER----LGAD------H--VVDARRDPVKQVME 248 (359)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCC--CEEEEEESSHHHHHHHHH----TTCS------E--EEETTSCHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHH----hCCC------E--EEeccchHHHHHHH
Confidence 478899999999986 88888889887 6 589999999988887753 2221 1 1111100 0 0
Q ss_pred CCCCCCccEEEEccCCCC--chHHHHHhcCCCcEEEEE
Q 028002 138 WPEFAPYDAIHVGAAAPE--IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~--~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+....... ..+.+.+. ++|.++..
T Consensus 249 ~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~ 284 (359)
T 1h2b_A 249 LTRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIV 284 (359)
T ss_dssp HTTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEEC
T ss_pred HhCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEE
Confidence 111137999998876653 45555555 89988874
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.1 Score=36.02 Aligned_cols=93 Identities=15% Similarity=0.031 Sum_probs=59.0
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--C--CCCC
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--P--EFAP 143 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~--~~~~ 143 (215)
..+|+-+|+|. |......+...| ..|+++|.++..++.+++ ..+.++.+|..+.. . ....
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g--~~v~vid~~~~~~~~~~~-------------~g~~~i~gd~~~~~~l~~a~i~~ 71 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASD--IPLVVIETSRTRVDELRE-------------RGVRAVLGNAANEEIMQLAHLEC 71 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHHHHHHHHH-------------TTCEEEESCTTSHHHHHHTTGGG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH-------------cCCCEEECCCCCHHHHHhcCccc
Confidence 45799999976 544443333323 689999999998776653 25667888876521 1 1246
Q ss_pred ccEEEEccCCCCch---HHHHHhcCCCcEEEEEeCC
Q 028002 144 YDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 144 ~D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|.|++..+..... -...+.+.|+..++.-..+
T Consensus 72 ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~~ 107 (140)
T 3fwz_A 72 AKWLILTIPNGYEAGEIVASARAKNPDIEIIARAHY 107 (140)
T ss_dssp CSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEESS
T ss_pred CCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 89888776553311 2345667788887765544
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.021 Score=46.55 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=56.8
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
+.+|+-+|+|. |......++..| .+|+++|.++..++.+++.+. ..+.....+..+.......+|+|
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~G--a~V~~~d~~~~~~~~~~~~~g----------~~~~~~~~~~~~l~~~~~~~DvV 233 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMG--AQVTILDVNHKRLQYLDDVFG----------GRVITLTATEANIKKSVQHADLL 233 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTT----------TSEEEEECCHHHHHHHHHHCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHhcC----------ceEEEecCCHHHHHHHHhCCCEE
Confidence 57999999975 666666666655 589999999987776654321 12211111110000000257999
Q ss_pred EEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028002 148 HVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 148 ~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
+....... +.+...+.+++||.++...
T Consensus 234 i~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 234 IGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp EECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred EECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 87765442 3577888999999877643
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.01 Score=52.56 Aligned_cols=108 Identities=19% Similarity=0.176 Sum_probs=66.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhC------C-----CCeEEEEecChHHHHHHHH--------------HHHhhccc-C
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVG------P-----QGRAVGVEHIPELVVSSIQ--------------NIEKSAAA-P 120 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~------~-----~~~v~~~D~s~~~~~~a~~--------------~~~~~~~~-~ 120 (215)
++.-+|+|+|.|+|...+.+.+.+. | ..+++.+|..+-..+..++ .+..+... +
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 3446899999999998887766431 1 1468999985533333332 22222110 0
Q ss_pred c-----cc--CCCeEEEeCCCCCCCCC-----CCCccEEEEccCCC---------CchHHHHHhcCCCcEEEEEe
Q 028002 121 L-----LK--EGSLSVHVGDGRKGWPE-----FAPYDAIHVGAAAP---------EIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 121 ~-----~~--~~~v~~~~~d~~~~~~~-----~~~~D~V~~~~~~~---------~~~~~~~~~Lk~gG~lv~~~ 174 (215)
. +. .-.+++..+|+.+.++. ...+|.++.++-.+ .++..+.+++++||.+....
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~ 211 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT 211 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence 0 11 12567888888654332 26799999987542 34567889999999877643
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.043 Score=44.29 Aligned_cols=95 Identities=15% Similarity=0.206 Sum_probs=62.7
Q ss_pred cCCCC--CEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC----
Q 028002 65 NLKPG--MHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---- 136 (215)
Q Consensus 65 ~~~~~--~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---- 136 (215)
.++++ .+||-.|+ | .|..+..+++..|. .+|++++.++...+.+++.+ +. . .++.....+
T Consensus 155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga-~~Vi~~~~~~~~~~~~~~~~---g~------~--~~~d~~~~~~~~~ 222 (357)
T 2zb4_A 155 HITAGSNKTMVVSGAAGACGSVAGQIGHFLGC-SRVVGICGTHEKCILLTSEL---GF------D--AAINYKKDNVAEQ 222 (357)
T ss_dssp CCCTTSCCEEEESSTTBHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTS---CC------S--EEEETTTSCHHHH
T ss_pred CCCCCCccEEEEECCCcHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHc---CC------c--eEEecCchHHHHH
Confidence 37788 99999998 3 37777788877652 38999999988777665422 21 1 111111111
Q ss_pred --CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 137 --GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 --~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.... +.+|+|+.+... ...+.+.+.|+++|++++.
T Consensus 223 ~~~~~~-~~~d~vi~~~G~-~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 223 LRESCP-AGVDVYFDNVGG-NISDTVISQMNENSHIILC 259 (357)
T ss_dssp HHHHCT-TCEEEEEESCCH-HHHHHHHHTEEEEEEEEEC
T ss_pred HHHhcC-CCCCEEEECCCH-HHHHHHHHHhccCcEEEEE
Confidence 0011 269999887764 5567888999999999874
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.17 Score=39.70 Aligned_cols=89 Identities=10% Similarity=0.071 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CCCCCCCCCCCCcc
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~D 145 (215)
.+.+|+-+|+|. |......++.+| .+|+++|.++...+.+. ..+ +.... .+..+.. ...|
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~dr~~~~~~~~~----~~g---------~~~~~~~~l~~~l---~~aD 215 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAALG--AKVKVGARESDLLARIA----EMG---------MEPFHISKAAQEL---RDVD 215 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH----HTT---------SEEEEGGGHHHHT---TTCS
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHH----HCC---------CeecChhhHHHHh---cCCC
Confidence 478999999986 666656666655 58999999987544332 211 22221 1111111 4689
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 146 AIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+...+..-+.+.....+++|+.++-..
T Consensus 216 vVi~~~p~~~i~~~~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 216 VCINTIPALVVTANVLAEMPSHTFVIDLA 244 (293)
T ss_dssp EEEECCSSCCBCHHHHHHSCTTCEEEECS
T ss_pred EEEECCChHHhCHHHHHhcCCCCEEEEec
Confidence 99988877655567788899998776543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.11 Score=37.47 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=54.7
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC--C--C-CC
Q 028002 69 GMHALDIGSGT-GYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--W--P-EF 141 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~--~-~~ 141 (215)
+++|+-+|+|. |......+... | .+|+++|.++..++.+++ ..+.++.+|..+. + . ..
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g--~~V~vid~~~~~~~~~~~-------------~g~~~~~gd~~~~~~l~~~~~~ 103 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYG--KISLGIEIREEAAQQHRS-------------EGRNVISGDATDPDFWERILDT 103 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHC--SCEEEEESCHHHHHHHHH-------------TTCCEEECCTTCHHHHHTBCSC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccC--CeEEEEECCHHHHHHHHH-------------CCCCEEEcCCCCHHHHHhccCC
Confidence 56899999875 54443333332 3 689999999987665542 2344566665431 1 1 12
Q ss_pred CCccEEEEccCCCCchH---HHHHhcCCCcEEEEEeCC
Q 028002 142 APYDAIHVGAAAPEIPQ---ALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~---~~~~~Lk~gG~lv~~~~~ 176 (215)
..+|+|+...+...... ...+.+.|++.++....+
T Consensus 104 ~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 141 (183)
T 3c85_A 104 GHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIAEY 141 (183)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 56899887655433222 234556667777775544
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.17 Score=41.80 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 111 (215)
++.+|+-+|+|. |.....+++.+| .+|+++|.++..++.+++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLG--AVVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSTTHHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH
Confidence 468999999997 888888888776 589999999988777754
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.19 Score=39.59 Aligned_cols=89 Identities=11% Similarity=0.059 Sum_probs=57.1
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CCCCCCCCCCCCcc
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~D 145 (215)
.+.+|+-+|+|. |......++.+| .+|+++|.++...+.+.+ .+ +.... .+..+.. ...|
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~G--~~V~~~d~~~~~~~~~~~----~g---------~~~~~~~~l~~~l---~~aD 217 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAALG--ANVKVGARSSAHLARITE----MG---------LVPFHTDELKEHV---KDID 217 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TT---------CEEEEGGGHHHHS---TTCS
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH----CC---------CeEEchhhHHHHh---hCCC
Confidence 468999999986 665555555555 589999999865443321 11 22221 1211111 4689
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 146 AIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|+...+..-+.+.....+++|+.++=..
T Consensus 218 vVi~~~p~~~i~~~~~~~mk~g~~lin~a 246 (300)
T 2rir_A 218 ICINTIPSMILNQTVLSSMTPKTLILDLA 246 (300)
T ss_dssp EEEECCSSCCBCHHHHTTSCTTCEEEECS
T ss_pred EEEECCChhhhCHHHHHhCCCCCEEEEEe
Confidence 99988887655567788899988776543
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.12 Score=42.92 Aligned_cols=88 Identities=11% Similarity=0.058 Sum_probs=58.7
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.-.+.+|+-+|+|. |......++.+| .+|+++|.++.....+.. . ...+ .+..+.. ...
T Consensus 217 ~L~GktV~ViG~G~IGk~vA~~Lra~G--a~Viv~D~dp~ra~~A~~----~---------G~~v--~~Leeal---~~A 276 (435)
T 3gvp_A 217 MFGGKQVVVCGYGEVGKGCCAALKAMG--SIVYVTEIDPICALQACM----D---------GFRL--VKLNEVI---RQV 276 (435)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH----T---------TCEE--CCHHHHT---TTC
T ss_pred eecCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEeCChhhhHHHHH----c---------CCEe--ccHHHHH---hcC
Confidence 34688999999997 777777777766 589999999865444321 1 1111 1222211 357
Q ss_pred cEEEEccCCCCch-HHHHHhcCCCcEEEEE
Q 028002 145 DAIHVGAAAPEIP-QALIDQLKPGGRMVIP 173 (215)
Q Consensus 145 D~V~~~~~~~~~~-~~~~~~Lk~gG~lv~~ 173 (215)
|+|+......+++ .+....+|+|++++-.
T Consensus 277 DIVi~atgt~~lI~~e~l~~MK~gailINv 306 (435)
T 3gvp_A 277 DIVITCTGNKNVVTREHLDRMKNSCIVCNM 306 (435)
T ss_dssp SEEEECSSCSCSBCHHHHHHSCTTEEEEEC
T ss_pred CEEEECCCCcccCCHHHHHhcCCCcEEEEe
Confidence 9988866556655 4888999999877654
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.04 Score=46.60 Aligned_cols=77 Identities=16% Similarity=0.061 Sum_probs=52.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC---------
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--------- 139 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------- 139 (215)
..+++|+.||.|+++..+.+. |. ..+.++|+++.+++.-+.++... +...++.+|+.+...
T Consensus 88 ~~~viDLFaG~GGlslG~~~a-G~-~~v~avE~d~~A~~ty~~N~~~~--------p~~~~~~~DI~~i~~~~~~~~~~~ 157 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI-GG-QCVFTSEWNKHAVRTYKANHYCD--------PATHHFNEDIRDITLSHQEGVSDE 157 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT-TE-EEEEEECCCHHHHHHHHHHSCCC--------TTTCEEESCTHHHHCTTCTTSCHH
T ss_pred cceEEEecCCccHHHHHHHHC-CC-EEEEEEeCCHHHHHHHHHhcccC--------CCcceeccchhhhhhccccccchh
Confidence 468999999999999998776 43 45899999998877666554210 233455666654221
Q ss_pred --------CCCCccEEEEccCCCC
Q 028002 140 --------EFAPYDAIHVGAAAPE 155 (215)
Q Consensus 140 --------~~~~~D~V~~~~~~~~ 155 (215)
....+|+|+..++++.
T Consensus 158 ~~~~~i~~~~~~~Dvl~gGpPCQ~ 181 (482)
T 3me5_A 158 AAAEHIRQHIPEHDVLLAGFPCQP 181 (482)
T ss_dssp HHHHHHHHHSCCCSEEEEECCCCC
T ss_pred hHHhhhhhcCCCCCEEEecCCCcc
Confidence 1135899988877643
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.38 Score=39.34 Aligned_cols=91 Identities=22% Similarity=0.308 Sum_probs=58.9
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC----CCCC-----
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD----GRKG----- 137 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d----~~~~----- 137 (215)
++.+|+-+|+|. |..+..+++.+| .+|+++|.++..++.+++ + +. ++...+ ....
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lG--a~V~v~D~~~~~l~~~~~-l---Ga---------~~~~l~~~~~~~~gya~~~ 247 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLG--AKTTGYDVRPEVAEQVRS-V---GA---------QWLDLGIDAAGEGGYAREL 247 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHT--CEEEEECSSGGGHHHHHH-T---TC---------EECCCC-------------
T ss_pred CCCEEEEECchHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-c---CC---------eEEeccccccccccchhhh
Confidence 467999999997 888888888776 589999999988777654 1 11 111100 0000
Q ss_pred -----------C-CCCCCccEEEEccCC-----CC-chHHHHHhcCCCcEEEEE
Q 028002 138 -----------W-PEFAPYDAIHVGAAA-----PE-IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 -----------~-~~~~~~D~V~~~~~~-----~~-~~~~~~~~Lk~gG~lv~~ 173 (215)
+ ......|+|+..... +. +-++..+.+|||++++=.
T Consensus 248 ~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDv 301 (381)
T 3p2y_A 248 SEAERAQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDL 301 (381)
T ss_dssp CHHHHHHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEET
T ss_pred hHHHHhhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEE
Confidence 0 001468999876422 23 347899999998877753
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.057 Score=43.45 Aligned_cols=89 Identities=13% Similarity=0.022 Sum_probs=57.9
Q ss_pred CEEEEE-cCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC---C---CCC
Q 028002 70 MHALDI-GSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---W---PEF 141 (215)
Q Consensus 70 ~~vLdi-G~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~---~~~ 141 (215)
.+||-. |+|. |..+..+++..| .+|++++.++..++.+++ .+. + .++..+..+. . ...
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~----~Ga------~--~~~~~~~~~~~~~v~~~~~~ 231 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEG--FRPIVTVRRDEQIALLKD----IGA------A--HVLNEKAPDFEATLREVMKA 231 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHT--CEEEEEESCGGGHHHHHH----HTC------S--EEEETTSTTHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCC------C--EEEECCcHHHHHHHHHHhcC
Confidence 566654 5654 888888888876 589999999988887764 222 1 1222111110 0 001
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+|+|+....... ...+.+.|+++|.+++.
T Consensus 232 ~g~D~vid~~g~~~-~~~~~~~l~~~G~iv~~ 262 (349)
T 3pi7_A 232 EQPRIFLDAVTGPL-ASAIFNAMPKRARWIIY 262 (349)
T ss_dssp HCCCEEEESSCHHH-HHHHHHHSCTTCEEEEC
T ss_pred CCCcEEEECCCChh-HHHHHhhhcCCCEEEEE
Confidence 36999998766543 36788999999999885
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.083 Score=43.90 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=45.9
Q ss_pred CcccchhHHHHHH--------HHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhC---C-CCeEEEEecChHHHHHHHHHH
Q 028002 46 NATISAPHMHATC--------LQLLEENLKPGMHALDIGSGTGYLTACFALMVG---P-QGRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 46 ~~~~~~~~~~~~~--------l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~-~~~v~~~D~s~~~~~~a~~~~ 113 (215)
|.++++|++...+ .+.+. ... ...|+|+|+|+|.++..+++.+. + ..+++.+|+|+...+.=++++
T Consensus 109 GDFiTAPeiS~~FGe~la~~~~~~~~-~~g-~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L 186 (432)
T 4f3n_A 109 SDFVTAPELSPLFAQTLARPVAQALD-ASG-TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETL 186 (432)
T ss_dssp -CCSSCGGGHHHHHHHHHHHHHHHHH-HHT-CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHH
T ss_pred CCccCchhhhHHHHHHHHHHHHHHHH-hcC-CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHH
Confidence 5567777744322 22222 122 47999999999999988876542 1 247999999999887777776
Q ss_pred Hh
Q 028002 114 EK 115 (215)
Q Consensus 114 ~~ 115 (215)
..
T Consensus 187 ~~ 188 (432)
T 4f3n_A 187 GA 188 (432)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.098 Score=42.85 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 111 (215)
++.+|+-+|+|. |..+..+++.+| .+|+.+|.++...+.+++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVES 213 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 478999999997 888888888876 479999999887666643
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.014 Score=47.21 Aligned_cols=93 Identities=16% Similarity=0.074 Sum_probs=54.5
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC--CCCCC--
Q 028002 65 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD--GRKGW-- 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d--~~~~~-- 138 (215)
.++++.+||-.|+ |. |..+..+++..+. .+|++++ ++...+.++ .+. +. ++..+ ..+..
T Consensus 139 ~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~-~~V~~~~-~~~~~~~~~-----~ga------~~--~~~~~~~~~~~~~~ 203 (349)
T 4a27_A 139 NLREGMSVLVHSAGGGVGQAVAQLCSTVPN-VTVFGTA-STFKHEAIK-----DSV------TH--LFDRNADYVQEVKR 203 (349)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHTTSTT-CEEEEEE-CGGGHHHHG-----GGS------SE--EEETTSCHHHHHHH
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-cEEEEeC-CHHHHHHHH-----cCC------cE--EEcCCccHHHHHHH
Confidence 4678999999998 43 7788888876542 6788888 444444433 222 11 11111 10000
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+.+|+|+....-..+ +.+.++|+++|++++.
T Consensus 204 ~~~~g~Dvv~d~~g~~~~-~~~~~~l~~~G~~v~~ 237 (349)
T 4a27_A 204 ISAEGVDIVLDCLCGDNT-GKGLSLLKPLGTYILY 237 (349)
T ss_dssp HCTTCEEEEEEECC--------CTTEEEEEEEEEE
T ss_pred hcCCCceEEEECCCchhH-HHHHHHhhcCCEEEEE
Confidence 012579999977665544 6788999999999875
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.081 Score=43.66 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHH
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSI 110 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~ 110 (215)
++.+|+-+|+|. |..+..+++.+| .+|+++|.++...+.++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~~~~~~~~ 212 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQ 212 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHH
Confidence 468999999997 888888888776 58999999998776653
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.14 Score=47.17 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=50.6
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC------------CC
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG------------RK 136 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~------------~~ 136 (215)
..+++|+.||.|+++..+... |....+.++|+++.+.+.-+.|+. ...++.+|+ ..
T Consensus 540 ~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~~ty~~N~p-----------~~~~~~~DI~~l~~~~~~~di~~ 607 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAAQAFRLNNP-----------GSTVFTEDCNILLKLVMAGETTN 607 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHHHHHHHHCT-----------TSEEECSCHHHHHHHHHHTCSBC
T ss_pred CCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhCC-----------CCccccccHHHHhhhccchhhhh
Confidence 458999999999999999877 431358899999998877665542 233343332 11
Q ss_pred ----CCCCCCCccEEEEccCCC
Q 028002 137 ----GWPEFAPYDAIHVGAAAP 154 (215)
Q Consensus 137 ----~~~~~~~~D~V~~~~~~~ 154 (215)
..+..+.+|+|+..++++
T Consensus 608 ~~~~~lp~~~~vDll~GGpPCQ 629 (1002)
T 3swr_A 608 SRGQRLPQKGDVEMLCGGPPCQ 629 (1002)
T ss_dssp TTCCBCCCTTTCSEEEECCCCT
T ss_pred hhhhhcccCCCeeEEEEcCCCc
Confidence 122235799999888764
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.058 Score=47.51 Aligned_cols=107 Identities=19% Similarity=0.159 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh------CC-----CCeEEEEec---ChHHHHHHH-----------HHHHhhccc-Cc
Q 028002 68 PGMHALDIGSGTGYLTACFALMV------GP-----QGRAVGVEH---IPELVVSSI-----------QNIEKSAAA-PL 121 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~------~~-----~~~v~~~D~---s~~~~~~a~-----------~~~~~~~~~-~~ 121 (215)
+.-+|+|+|-|+|.......+.. .| .-.++++|. +.+.+..+- +.+..+... +.
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34589999999999887765543 11 136899998 555554322 222222110 00
Q ss_pred -----cc--CCCeEEEeCCCCCCCCC-----CCCccEEEEccCC---------CCchHHHHHhcCCCcEEEEEe
Q 028002 122 -----LK--EGSLSVHVGDGRKGWPE-----FAPYDAIHVGAAA---------PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 122 -----~~--~~~v~~~~~d~~~~~~~-----~~~~D~V~~~~~~---------~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+. .-.+++..+|+.+.++. ...||.|+.++-. ..++..+.++++|||.+...+
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~ 219 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT 219 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence 00 12456777877653331 2579999998743 234577899999999987643
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=93.59 E-value=0.32 Score=39.90 Aligned_cols=44 Identities=20% Similarity=0.162 Sum_probs=33.8
Q ss_pred CEEEEEcCCccHHHHHHHHHhC------CCCeEEEEecChHHHHHHHHHH
Q 028002 70 MHALDIGSGTGYLTACFALMVG------PQGRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~------~~~~v~~~D~s~~~~~~a~~~~ 113 (215)
-.|+|+|+|+|.++..+++.+. ...+++.+|.|+...+.=++.+
T Consensus 82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L 131 (387)
T 1zkd_A 82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL 131 (387)
T ss_dssp EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence 4799999999999998876542 1248999999998877544444
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.29 Score=40.89 Aligned_cols=88 Identities=15% Similarity=0.047 Sum_probs=58.7
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.-.+.+|+-+|+|. |......++.+| .+|+++|.++.....+.. ..+.+. +..+.. ...
T Consensus 244 ~L~GKTVgVIG~G~IGr~vA~~lrafG--a~Viv~d~dp~~a~~A~~-------------~G~~vv--~LeElL---~~A 303 (464)
T 3n58_A 244 MMAGKVAVVCGYGDVGKGSAQSLAGAG--ARVKVTEVDPICALQAAM-------------DGFEVV--TLDDAA---STA 303 (464)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHH-------------TTCEEC--CHHHHG---GGC
T ss_pred cccCCEEEEECcCHHHHHHHHHHHHCC--CEEEEEeCCcchhhHHHh-------------cCceec--cHHHHH---hhC
Confidence 45678999999997 777777777665 689999998865433321 122221 111111 357
Q ss_pred cEEEEccCCCCch-HHHHHhcCCCcEEEEE
Q 028002 145 DAIHVGAAAPEIP-QALIDQLKPGGRMVIP 173 (215)
Q Consensus 145 D~V~~~~~~~~~~-~~~~~~Lk~gG~lv~~ 173 (215)
|+|+......+++ .+....+|+|++|+-.
T Consensus 304 DIVv~atgt~~lI~~e~l~~MK~GAILINv 333 (464)
T 3n58_A 304 DIVVTTTGNKDVITIDHMRKMKDMCIVGNI 333 (464)
T ss_dssp SEEEECCSSSSSBCHHHHHHSCTTEEEEEC
T ss_pred CEEEECCCCccccCHHHHhcCCCCeEEEEc
Confidence 9988776666665 6788999999987653
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.18 Score=35.42 Aligned_cols=96 Identities=16% Similarity=0.015 Sum_probs=54.7
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC--C--CCC
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--W--PEF 141 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~--~~~ 141 (215)
.++.+|+-+|+|. |......+...| .+|+++|.++..++.+++ . ....++.++..+. + ...
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g--~~V~vid~~~~~~~~~~~---~---------~g~~~~~~d~~~~~~l~~~~~ 82 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSG--HSVVVVDKNEYAFHRLNS---E---------FSGFTVVGDAAEFETLKECGM 82 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGGGGGSCT---T---------CCSEEEESCTTSHHHHHTTTG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHh---c---------CCCcEEEecCCCHHHHHHcCc
Confidence 4568999999876 554444444433 589999998876543320 1 2344555654321 1 112
Q ss_pred CCccEEEEccCCCCchHHH---HHhcCCCcEEEEEeCC
Q 028002 142 APYDAIHVGAAAPEIPQAL---IDQLKPGGRMVIPVGN 176 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~---~~~Lk~gG~lv~~~~~ 176 (215)
..+|+|+...........+ .+.+.+...++....+
T Consensus 83 ~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 83 EKADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp GGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSS
T ss_pred ccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 4689998877665444333 3334555566665544
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.084 Score=40.55 Aligned_cols=98 Identities=11% Similarity=0.018 Sum_probs=54.1
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
+.+|+-+|||. |......+...|. ++++.+|.+. ...+.+++++....- .-.+.
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv-~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np-----~~~v~ 104 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGV-GNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINP-----HIAIT 104 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCT-----TSEEE
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCC-CeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCC-----CcEEE
Confidence 46899999985 5544433333354 6899999987 566777777665321 02344
Q ss_pred EEeCCCCCCCC--CCCCccEEEEccCCCCchHHHHHhcCCCcEEEE
Q 028002 129 VHVGDGRKGWP--EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 129 ~~~~d~~~~~~--~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~ 172 (215)
....+...... ....||+|+...........+.+..+..|.-++
T Consensus 105 ~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i 150 (249)
T 1jw9_B 105 PVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLV 150 (249)
T ss_dssp EECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEE
T ss_pred EEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHHcCCCEE
Confidence 44443331100 013689999876544333333343333443333
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.23 Score=34.06 Aligned_cols=92 Identities=10% Similarity=0.100 Sum_probs=53.2
Q ss_pred CCEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCCCC
Q 028002 69 GMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAP 143 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~ 143 (215)
..+|+-+|+|. .+..+++.+. ...+|+++|.++..++.+++ ..+.++.+|..+.. .....
T Consensus 6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-------------~~~~~~~gd~~~~~~l~~~~~~~ 70 (141)
T 3llv_A 6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLED-------------EGFDAVIADPTDESFYRSLDLEG 70 (141)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-------------TTCEEEECCTTCHHHHHHSCCTT
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-------------CCCcEEECCCCCHHHHHhCCccc
Confidence 45799999975 3333333221 12689999999987766543 24567778876521 11256
Q ss_pred ccEEEEccCCCCch---HHHHHhcCCCcEEEEEeCC
Q 028002 144 YDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 144 ~D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|.|+...+..... -...+.+. ...++....+
T Consensus 71 ~d~vi~~~~~~~~n~~~~~~a~~~~-~~~iia~~~~ 105 (141)
T 3llv_A 71 VSAVLITGSDDEFNLKILKALRSVS-DVYAIVRVSS 105 (141)
T ss_dssp CSEEEECCSCHHHHHHHHHHHHHHC-CCCEEEEESC
T ss_pred CCEEEEecCCHHHHHHHHHHHHHhC-CceEEEEEcC
Confidence 89888776632211 12334455 5566554443
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.22 E-value=0.12 Score=40.78 Aligned_cols=53 Identities=30% Similarity=0.428 Sum_probs=38.7
Q ss_pred CCeEEEeCCCCCCC--CCCCCccEEEEccCCCC--------------------------chHHHHHhcCCCcEEEEEeCC
Q 028002 125 GSLSVHVGDGRKGW--PEFAPYDAIHVGAAAPE--------------------------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 125 ~~v~~~~~d~~~~~--~~~~~~D~V~~~~~~~~--------------------------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
....++++|..+.. ...++||+|+++++... ++.++.++|+|||.+++.+++
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 46789999987532 23378999999998731 123577899999999998875
Q ss_pred C
Q 028002 177 I 177 (215)
Q Consensus 177 ~ 177 (215)
.
T Consensus 100 ~ 100 (297)
T 2zig_A 100 V 100 (297)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.16 Score=35.10 Aligned_cols=87 Identities=18% Similarity=0.121 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-CCCCCCCCCCCcc
Q 028002 68 PGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~D 145 (215)
.+.+|+-+|+|. .+..+++.+. ...+++.+|.++...+...+.+. ...... +..+. ...+|
T Consensus 20 ~~~~v~iiG~G~--iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~------------~~~~~~~~~~~~---~~~~D 82 (144)
T 3oj0_A 20 GGNKILLVGNGM--LASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYE------------YEYVLINDIDSL---IKNND 82 (144)
T ss_dssp CCCEEEEECCSH--HHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHT------------CEEEECSCHHHH---HHTCS
T ss_pred cCCEEEEECCCH--HHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhC------------CceEeecCHHHH---hcCCC
Confidence 378999999864 4444444331 11459999999887655433321 122211 11111 13589
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEE
Q 028002 146 AIHVGAAAPEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~ 172 (215)
+|+...+..+..-. ...+++|+.++-
T Consensus 83 ivi~at~~~~~~~~-~~~l~~g~~vid 108 (144)
T 3oj0_A 83 VIITATSSKTPIVE-ERSLMPGKLFID 108 (144)
T ss_dssp EEEECSCCSSCSBC-GGGCCTTCEEEE
T ss_pred EEEEeCCCCCcEee-HHHcCCCCEEEE
Confidence 99887766542211 267788766544
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=3.1 Score=32.32 Aligned_cols=75 Identities=12% Similarity=0.024 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCcc-----HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC---
Q 028002 68 PGMHALDIGSGTG-----YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G-----~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--- 139 (215)
.+.++|-.|++.| .++..+++. | .+|+.++.++...+.+++..... .++.++.+|+.+...
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~-G--~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~Dv~d~~~v~~ 98 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREA-G--AELAFTYQGDALKKRVEPLAEEL--------GAFVAGHCDVADAASIDA 98 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHT-T--CEEEEEECSHHHHHHHHHHHHHH--------TCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC-C--CEEEEEcCCHHHHHHHHHHHHhc--------CCceEEECCCCCHHHHHH
Confidence 4678999997633 233344444 3 68999999876555554443332 357788888876211
Q ss_pred -------CCCCccEEEEccCC
Q 028002 140 -------EFAPYDAIHVGAAA 153 (215)
Q Consensus 140 -------~~~~~D~V~~~~~~ 153 (215)
..+..|+++.+...
T Consensus 99 ~~~~~~~~~g~iD~lVnnAG~ 119 (293)
T 3grk_A 99 VFETLEKKWGKLDFLVHAIGF 119 (293)
T ss_dssp HHHHHHHHTSCCSEEEECCCC
T ss_pred HHHHHHHhcCCCCEEEECCcc
Confidence 12578999887654
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.9 Score=37.53 Aligned_cols=93 Identities=18% Similarity=0.264 Sum_probs=59.8
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCCCC
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAP 143 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~ 143 (215)
+++|+-+|+|. |......+...| ..|+++|.++..++.+++ ..+.++.+|..+.. .....
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g--~~vvvId~d~~~v~~~~~-------------~g~~vi~GDat~~~~L~~agi~~ 68 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSG--VKMVVLDHDPDHIETLRK-------------FGMKVFYGDATRMDLLESAGAAK 68 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEECCHHHHHHHHH-------------TTCCCEESCTTCHHHHHHTTTTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHh-------------CCCeEEEcCCCCHHHHHhcCCCc
Confidence 46799999875 544433333323 689999999998887753 24567888887631 12257
Q ss_pred ccEEEEccCCCCch---HHHHHhcCCCcEEEEEeCC
Q 028002 144 YDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 144 ~D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+|++..+-.... -...+.+.|+..++.-..+
T Consensus 69 A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiara~~ 104 (413)
T 3l9w_A 69 AEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARD 104 (413)
T ss_dssp CSEEEECCSSHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred cCEEEECCCChHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 89888776553322 2345667788777775543
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=91.69 E-value=0.47 Score=42.53 Aligned_cols=46 Identities=20% Similarity=0.060 Sum_probs=35.6
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCC----CCeEEEEecChHHHHHHHHHH
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGP----QGRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~----~~~v~~~D~s~~~~~~a~~~~ 113 (215)
+..+|+|+.||.|+++.-+...++. -.-+.++|.++.+++.-+.|.
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 3468999999999999988776310 136789999999888776664
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=1.2 Score=37.64 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=53.9
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
-.+.+++-+|+|. |......++..| .+|+.+|.++.....+... ..++ .+..+. ...+|
T Consensus 263 L~GKtVvVtGaGgIG~aiA~~Laa~G--A~Viv~D~~~~~a~~Aa~~-------------g~dv--~~lee~---~~~aD 322 (488)
T 3ond_A 263 IAGKVAVVAGYGDVGKGCAAALKQAG--ARVIVTEIDPICALQATME-------------GLQV--LTLEDV---VSEAD 322 (488)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHHT-------------TCEE--CCGGGT---TTTCS
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHh-------------CCcc--CCHHHH---HHhcC
Confidence 4578999999983 433333344434 6899999998765554321 1121 122221 14589
Q ss_pred EEEEccCCCCch-HHHHHhcCCCcEEEEE
Q 028002 146 AIHVGAAAPEIP-QALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~-~~~~~~Lk~gG~lv~~ 173 (215)
+|+......+++ .+..+.+++|+.++-.
T Consensus 323 vVi~atG~~~vl~~e~l~~mk~gaiVvNa 351 (488)
T 3ond_A 323 IFVTTTGNKDIIMLDHMKKMKNNAIVCNI 351 (488)
T ss_dssp EEEECSSCSCSBCHHHHTTSCTTEEEEES
T ss_pred EEEeCCCChhhhhHHHHHhcCCCeEEEEc
Confidence 888776655555 5588899998877643
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=1.7 Score=33.09 Aligned_cols=77 Identities=12% Similarity=-0.002 Sum_probs=48.2
Q ss_pred CCCEEEEEcCC--ccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC---
Q 028002 68 PGMHALDIGSG--TGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--- 139 (215)
Q Consensus 68 ~~~~vLdiG~G--~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--- 139 (215)
.+.++|-.|++ .|. ++..+++. | .+|+.++.++...+.+.+.....+ ..++.++.+|+.+...
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~-G--~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~ 76 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEA-G--ARLIFTYAGERLEKSVHELAGTLD------RNDSIILPCDVTNDAEIET 76 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHT-T--CEEEEEESSGGGHHHHHHHHHTSS------SCCCEEEECCCSSSHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHC-C--CEEEEecCchHHHHHHHHHHHhcC------CCCceEEeCCCCCHHHHHH
Confidence 36789999976 332 33344444 3 689999988766665555444322 1378899999876321
Q ss_pred -------CCCCccEEEEccCC
Q 028002 140 -------EFAPYDAIHVGAAA 153 (215)
Q Consensus 140 -------~~~~~D~V~~~~~~ 153 (215)
..+.+|+++.+...
T Consensus 77 ~~~~~~~~~g~id~li~~Ag~ 97 (266)
T 3oig_A 77 CFASIKEQVGVIHGIAHCIAF 97 (266)
T ss_dssp HHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHhCCeeEEEEcccc
Confidence 11468988877653
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=91.52 E-value=1.7 Score=29.17 Aligned_cols=92 Identities=17% Similarity=0.108 Sum_probs=49.8
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCCCC
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAP 143 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~ 143 (215)
+++|+-+|+|. |......+...+ .+++++|.++..++...+. ..+.++.+|..+.. .....
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g--~~v~~~d~~~~~~~~~~~~------------~~~~~~~~d~~~~~~l~~~~~~~ 69 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDIDKDICKKASAE------------IDALVINGDCTKIKTLEDAGIED 69 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHH------------CSSEEEESCTTSHHHHHHTTTTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHh------------cCcEEEEcCCCCHHHHHHcCccc
Confidence 46899998865 433222222223 6899999998766544321 13445566654210 11246
Q ss_pred ccEEEEccCCCCch---HHHHHhcCCCcEEEEEeC
Q 028002 144 YDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 144 ~D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~~~~ 175 (215)
+|+|+...+..... ..+.+.+.++ .+++...
T Consensus 70 ~d~vi~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~ 103 (140)
T 1lss_A 70 ADMYIAVTGKEEVNLMSSLLAKSYGIN-KTIARIS 103 (140)
T ss_dssp CSEEEECCSCHHHHHHHHHHHHHTTCC-CEEEECS
T ss_pred CCEEEEeeCCchHHHHHHHHHHHcCCC-EEEEEec
Confidence 89988876553321 2344556665 5555443
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=91.36 E-value=0.065 Score=48.23 Aligned_cols=94 Identities=19% Similarity=0.173 Sum_probs=58.8
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE-EEeCCCCCC---C
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS-VHVGDGRKG---W 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~-~~~~d~~~~---~ 138 (215)
.++++.+||-.|+ | .|..+..+++..| .+|++++.++. .+..+ .+. +.+- ....++.+. .
T Consensus 342 ~l~~G~~VLI~gaaGgvG~~aiqlAk~~G--a~V~~t~~~~k-~~~l~-----lga------~~v~~~~~~~~~~~i~~~ 407 (795)
T 3slk_A 342 GLRPGESLLVHSAAGGVGMAAIQLARHLG--AEVYATASEDK-WQAVE-----LSR------EHLASSRTCDFEQQFLGA 407 (795)
T ss_dssp CCCTTCCEEEESTTBHHHHHHHHHHHHTT--CCEEEECCGGG-GGGSC-----SCG------GGEECSSSSTHHHHHHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeChHH-hhhhh-----cCh------hheeecCChhHHHHHHHH
Confidence 3678899999995 5 4899999999987 57898886542 11111 111 1110 000011000 0
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+|+....- ...+...++|+++|+++..
T Consensus 408 t~g~GvDvVld~~gg-~~~~~~l~~l~~~Gr~v~i 441 (795)
T 3slk_A 408 TGGRGVDVVLNSLAG-EFADASLRMLPRGGRFLEL 441 (795)
T ss_dssp SCSSCCSEEEECCCT-TTTHHHHTSCTTCEEEEEC
T ss_pred cCCCCeEEEEECCCc-HHHHHHHHHhcCCCEEEEe
Confidence 122479999986654 5668899999999999875
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=0.46 Score=39.48 Aligned_cols=87 Identities=15% Similarity=0.012 Sum_probs=56.4
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
-.+.+|.-+|.|. |......++.+| .+|+++|.++.....+.. ..+.+ .+..+.. ...|
T Consensus 209 L~GktVgIiG~G~IG~~vA~~Lka~G--a~Viv~D~~p~~a~~A~~-------------~G~~~--~sL~eal---~~AD 268 (436)
T 3h9u_A 209 IAGKTACVCGYGDVGKGCAAALRGFG--ARVVVTEVDPINALQAAM-------------EGYQV--LLVEDVV---EEAH 268 (436)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH-------------TTCEE--CCHHHHT---TTCS
T ss_pred ccCCEEEEEeeCHHHHHHHHHHHHCC--CEEEEECCChhhhHHHHH-------------hCCee--cCHHHHH---hhCC
Confidence 3478999999997 766666666665 689999999865544432 12221 1222222 3579
Q ss_pred EEEEccCCCCchH-HHHHhcCCCcEEEEE
Q 028002 146 AIHVGAAAPEIPQ-ALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~~-~~~~~Lk~gG~lv~~ 173 (215)
+|+......+++. +....+|+|++++-.
T Consensus 269 VVilt~gt~~iI~~e~l~~MK~gAIVINv 297 (436)
T 3h9u_A 269 IFVTTTGNDDIITSEHFPRMRDDAIVCNI 297 (436)
T ss_dssp EEEECSSCSCSBCTTTGGGCCTTEEEEEC
T ss_pred EEEECCCCcCccCHHHHhhcCCCcEEEEe
Confidence 9987766655553 677888988766554
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=91.04 E-value=0.91 Score=34.19 Aligned_cols=94 Identities=17% Similarity=0.072 Sum_probs=55.3
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
-.+.+||-+|+|. |..-...+...| .+|+.++.+.. ...++.... ..+.++........ ...+|
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~G--A~VtVvap~~~--~~l~~l~~~---------~~i~~i~~~~~~~d--L~~ad 93 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQEG--AAITVVAPTVS--AEINEWEAK---------GQLRVKRKKVGEED--LLNVF 93 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGGC--CCEEEECSSCC--HHHHHHHHT---------TSCEEECSCCCGGG--SSSCS
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCC--HHHHHHHHc---------CCcEEEECCCCHhH--hCCCC
Confidence 3468999999986 332222222223 67888876532 112222211 35677766554322 25699
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++....+.+-..+....+ -|.++-.+.+
T Consensus 94 LVIaAT~d~~~N~~I~~~ak-~gi~VNvvD~ 123 (223)
T 3dfz_A 94 FIVVATNDQAVNKFVKQHIK-NDQLVNMASS 123 (223)
T ss_dssp EEEECCCCTHHHHHHHHHSC-TTCEEEC---
T ss_pred EEEECCCCHHHHHHHHHHHh-CCCEEEEeCC
Confidence 99999888877777777777 7877654433
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.95 E-value=1.8 Score=29.89 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=55.3
Q ss_pred CCEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecC-hHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCCC
Q 028002 69 GMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHI-PELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFA 142 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~ 142 (215)
..+|+-+|+|. .+..+++.+. ....|+.+|.+ +...+...+... ..+.++.+|..+.. ....
T Consensus 3 ~~~vlI~G~G~--vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~----------~~~~~i~gd~~~~~~l~~a~i~ 70 (153)
T 1id1_A 3 KDHFIVCGHSI--LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----------DNADVIPGDSNDSSVLKKAGID 70 (153)
T ss_dssp CSCEEEECCSH--HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----------TTCEEEESCTTSHHHHHHHTTT
T ss_pred CCcEEEECCCH--HHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc----------CCCeEEEcCCCCHHHHHHcChh
Confidence 35788888754 4444443331 12689999997 454444332211 35778888876421 1235
Q ss_pred CccEEEEccCCCCch---HHHHHhcCCCcEEEEEeCC
Q 028002 143 PYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~~~~~ 176 (215)
.+|.|++.......- ....+.+.|...++.-..+
T Consensus 71 ~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~ 107 (153)
T 1id1_A 71 RCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp TCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred hCCEEEEecCChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 789888776554322 2345566677777775544
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=90.89 E-value=0.6 Score=44.27 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=35.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~ 113 (215)
..+++|+.||.|+++..+... |....+.++|+++.+++.-+.++
T Consensus 851 ~l~viDLFsG~GGlslGfe~A-G~~~vv~avEid~~A~~ty~~N~ 894 (1330)
T 3av4_A 851 KLRTLDVFSGCGGLSEGFHQA-GISETLWAIEMWDPAAQAFRLNN 894 (1330)
T ss_dssp CEEEEEETCTTSHHHHHHHHT-TSEEEEEEECCSHHHHHHHHHHC
T ss_pred CceEEecccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhC
Confidence 468999999999999998876 42135889999999888766554
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=90.57 E-value=0.86 Score=29.64 Aligned_cols=87 Identities=11% Similarity=0.094 Sum_probs=48.9
Q ss_pred CCEEEEEcCCccHHHHHHHHHh---CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC---CCC
Q 028002 69 GMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFA 142 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~ 142 (215)
+++|+-+|+| ..+..+++.+ | ..+++++|.++...+... . ..+.+...|..+... ...
T Consensus 5 ~~~v~I~G~G--~iG~~~~~~l~~~g-~~~v~~~~r~~~~~~~~~----~---------~~~~~~~~d~~~~~~~~~~~~ 68 (118)
T 3ic5_A 5 RWNICVVGAG--KIGQMIAALLKTSS-NYSVTVADHDLAALAVLN----R---------MGVATKQVDAKDEAGLAKALG 68 (118)
T ss_dssp CEEEEEECCS--HHHHHHHHHHHHCS-SEEEEEEESCHHHHHHHH----T---------TTCEEEECCTTCHHHHHHHTT
T ss_pred cCeEEEECCC--HHHHHHHHHHHhCC-CceEEEEeCCHHHHHHHH----h---------CCCcEEEecCCCHHHHHHHHc
Confidence 4689999995 4444333332 3 157999999987666543 1 355666777654210 114
Q ss_pred CccEEEEccCCCCchHHHHHhcCCCcEEEE
Q 028002 143 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~ 172 (215)
.+|+|+...+.... ..+.......|.-++
T Consensus 69 ~~d~vi~~~~~~~~-~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 69 GFDAVISAAPFFLT-PIIAKAAKAAGAHYF 97 (118)
T ss_dssp TCSEEEECSCGGGH-HHHHHHHHHTTCEEE
T ss_pred CCCEEEECCCchhh-HHHHHHHHHhCCCEE
Confidence 68999887754433 333333333343333
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.41 E-value=0.15 Score=40.64 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=39.8
Q ss_pred CCCeEEEeCCCCCCC--CCCCCccEEEEccCCCC--------------------chHHHHHhcCCCcEEEEEeCCC
Q 028002 124 EGSLSVHVGDGRKGW--PEFAPYDAIHVGAAAPE--------------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 124 ~~~v~~~~~d~~~~~--~~~~~~D~V~~~~~~~~--------------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.....++++|..+.. ...++||+|+++++... .+.++.++|+|||.+++.+.+.
T Consensus 12 ~~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 12 TSNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp CSSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred cCCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 357788899876422 23378999999998732 1246789999999999987764
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=90.35 E-value=0.16 Score=51.36 Aligned_cols=100 Identities=18% Similarity=0.091 Sum_probs=65.6
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE-eCCCCC---CC
Q 028002 65 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH-VGDGRK---GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~-~~d~~~---~~ 138 (215)
.+++|.+||-.|+ |. |..++.+++..| .+|++++.++...+.+++.+...+. ..+.-. ..++.+ ..
T Consensus 1664 ~l~~Ge~VLI~gaaGgVG~aAiqlAk~~G--a~Viat~~s~~k~~~l~~~~~~lga------~~v~~~~~~~~~~~i~~~ 1735 (2512)
T 2vz8_A 1664 RMQPGESVLIHSGSGGVGQAAIAIALSRG--CRVFTTVGSAEKRAYLQARFPQLDE------TCFANSRDTSFEQHVLRH 1735 (2512)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCTTCCS------TTEEESSSSHHHHHHHHT
T ss_pred cCCCCCEEEEEeCChHHHHHHHHHHHHcC--CEEEEEeCChhhhHHHHhhcCCCCc------eEEecCCCHHHHHHHHHh
Confidence 4688999999974 54 888899999876 5899999998887777664322221 111100 001000 01
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+|+.... ....+...++|+++|+++..
T Consensus 1736 t~g~GvDvVld~~g-~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A 1736 TAGKGVDLVLNSLA-EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp TTSCCEEEEEECCC-HHHHHHHHTTEEEEEEEEEC
T ss_pred cCCCCceEEEECCC-chHHHHHHHhcCCCcEEEEe
Confidence 11246999987654 45677889999999998874
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=90.19 E-value=3.3 Score=31.42 Aligned_cols=76 Identities=9% Similarity=-0.013 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCc--c---HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC---
Q 028002 68 PGMHALDIGSGT--G---YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~--G---~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--- 139 (215)
+++++|--|+++ | ..+..+++. | .+|+.++.++...+.+.+.+.+.+- .++.++..|+.+...
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~-G--a~Vvi~~r~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~v~~ 75 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQL-G--AKLVFTYRKERSRKELEKLLEQLNQ------PEAHLYQIDVQSDEEVIN 75 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHT-T--CEEEEEESSGGGHHHHHHHHGGGTC------SSCEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcCC------CcEEEEEccCCCHHHHHH
Confidence 467899999643 3 234444554 3 7899999999888887777665432 467888889875211
Q ss_pred -------CCCCccEEEEccC
Q 028002 140 -------EFAPYDAIHVGAA 152 (215)
Q Consensus 140 -------~~~~~D~V~~~~~ 152 (215)
..+..|+++.+..
T Consensus 76 ~~~~~~~~~G~iD~lvnnAg 95 (256)
T 4fs3_A 76 GFEQIGKDVGNIDGVYHSIA 95 (256)
T ss_dssp HHHHHHHHHCCCSEEEECCC
T ss_pred HHHHHHHHhCCCCEEEeccc
Confidence 1267898887754
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=90.18 E-value=0.51 Score=38.91 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=35.7
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCe----EEEEecChHHHHHHHHHHHh
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGR----AVGVEHIPELVVSSIQNIEK 115 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~----v~~~D~s~~~~~~a~~~~~~ 115 (215)
.+|+|+.||.|+.+..+.+...+-.- |.++|+++.+++.-+.++..
T Consensus 11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence 58999999999999999776311123 88899999988877776643
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=89.55 E-value=2.5 Score=33.36 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=52.0
Q ss_pred CEEEEEcCCc-c-HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC-CCCCCCCccE
Q 028002 70 MHALDIGSGT-G-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-GWPEFAPYDA 146 (215)
Q Consensus 70 ~~vLdiG~G~-G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~D~ 146 (215)
++|.-||+|. | .++..+.+. |...+|+++|.++..++.+.+ .+. +.-...+..+ . ....|+
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~-G~~~~V~~~dr~~~~~~~a~~----~G~--------~~~~~~~~~~~~---~~~aDv 97 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVD----LGI--------IDEGTTSIAKVE---DFSPDF 97 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHH----TTS--------CSEEESCTTGGG---GGCCSE
T ss_pred CEEEEEeeCHHHHHHHHHHHhC-CCCCEEEEEECCHHHHHHHHH----CCC--------cchhcCCHHHHh---hccCCE
Confidence 6899999986 4 445455554 432389999999987776543 221 1111222222 1 145799
Q ss_pred EEEccCCCC---chHHHHHhcCCCcEEEE
Q 028002 147 IHVGAAAPE---IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 147 V~~~~~~~~---~~~~~~~~Lk~gG~lv~ 172 (215)
|+...+... +.+++...++++..++-
T Consensus 98 Vilavp~~~~~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 98 VMLSSPVRTFREIAKKLSYILSEDATVTD 126 (314)
T ss_dssp EEECSCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEeCCHHHHHHHHHHHhhccCCCcEEEE
Confidence 987766544 33456677888765543
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.23 E-value=2.3 Score=32.61 Aligned_cols=77 Identities=16% Similarity=0.105 Sum_probs=47.4
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecC------------hHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 69 GMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHI------------PELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s------------~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
+.++|-.|++.| ++..+++.+ ....+|+.+|.+ ...++.+...+...+ .++.++.+|+.
T Consensus 10 gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~D~~ 81 (287)
T 3pxx_A 10 DKVVLVTGGARG-QGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG-------RKAYTAEVDVR 81 (287)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT-------SCEEEEECCTT
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC-------CceEEEEccCC
Confidence 578888887665 333333332 112689999987 555565555554432 47888899987
Q ss_pred CCCC----------CCCCccEEEEccCC
Q 028002 136 KGWP----------EFAPYDAIHVGAAA 153 (215)
Q Consensus 136 ~~~~----------~~~~~D~V~~~~~~ 153 (215)
+... ..+..|+++.+...
T Consensus 82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~ 109 (287)
T 3pxx_A 82 DRAAVSRELANAVAEFGKLDVVVANAGI 109 (287)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 6211 11478999877654
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=89.21 E-value=3.2 Score=33.47 Aligned_cols=78 Identities=17% Similarity=0.085 Sum_probs=46.2
Q ss_pred CCEEEEEcCCc-cHHHH-HHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCe
Q 028002 69 GMHALDIGSGT-GYLTA-CFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~-~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
+.+|+-+|||. |.... .++.. |. ++++.+|.+. ...+.+++++....- .-++
T Consensus 118 ~~~VlvvG~GglGs~va~~La~a-Gv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np-----~v~v 190 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATS-GI-GEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNS-----EISV 190 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHH-TC-SEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCT-----TSEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CC-CeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCC-----CCeE
Confidence 57999999986 55444 44444 55 7899999763 245566666665421 1245
Q ss_pred EEEeCCCCCCC--CCCCCccEEEEccCC
Q 028002 128 SVHVGDGRKGW--PEFAPYDAIHVGAAA 153 (215)
Q Consensus 128 ~~~~~d~~~~~--~~~~~~D~V~~~~~~ 153 (215)
+.....+.... .....||+|+.....
T Consensus 191 ~~~~~~i~~~~~~~~~~~~DlVvd~~Dn 218 (353)
T 3h5n_A 191 SEIALNINDYTDLHKVPEADIWVVSADH 218 (353)
T ss_dssp EEEECCCCSGGGGGGSCCCSEEEECCCC
T ss_pred EEeecccCchhhhhHhccCCEEEEecCC
Confidence 55554443211 113579999875543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=88.79 E-value=2.8 Score=32.10 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-----
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----- 139 (215)
+++.+|--|++.|. .+..+++. | .+|+.+|.+++.++...+.+...+ .++..+.+|+.+...
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~-G--a~Vv~~~~~~~~~~~~~~~i~~~g-------~~~~~~~~Dvt~~~~v~~~~ 75 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALN-D--SIVVAVELLEDRLNQIVQELRGMG-------KEVLGVKADVSKKKDVEEFV 75 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-C--CEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEccCCCHHHHHHHH
Confidence 46788888877763 33344444 3 789999999999888888777654 478889999876211
Q ss_pred -----CCCCccEEEEccC
Q 028002 140 -----EFAPYDAIHVGAA 152 (215)
Q Consensus 140 -----~~~~~D~V~~~~~ 152 (215)
..+..|+++.+..
T Consensus 76 ~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 76 RRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHcCCCCEEEECCc
Confidence 1267899988765
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=88.51 E-value=3.8 Score=32.12 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=32.9
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh------------------HHHHHHHHHHHhh
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP------------------ELVVSSIQNIEKS 116 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~------------------~~~~~a~~~~~~~ 116 (215)
..+|+-+|||. |......+.+.|- ++++.+|.+. ...+.+++++...
T Consensus 36 ~~~VlVvGaGGlGs~va~~La~aGV-G~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~i 101 (292)
T 3h8v_A 36 TFAVAIVGVGGVGSVTAEMLTRCGI-GKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNI 101 (292)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCBC------------CCTTSBHHHHHHHHHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCC-CEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhh
Confidence 57999999996 6654444334355 7899999776 4566677777654
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=88.44 E-value=4 Score=32.57 Aligned_cols=102 Identities=12% Similarity=0.106 Sum_probs=61.7
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc---------------CcccCCCeEEEe
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA---------------PLLKEGSLSVHV 131 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---------------~~~~~~~v~~~~ 131 (215)
.+...|+.+|||.......+.... +...++-+|. +..++.-++.+...+.. ..+...+..++.
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~ 173 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA 173 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHC-TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred CCCcEEEEeCCCCccHHHHhcCcC-CCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence 456789999999998888877652 3355666665 77777777766654210 000125788898
Q ss_pred CCCCCC-C--------CCCCCccEEEEccCCCCchH--------HHHHhcCCCcEEE
Q 028002 132 GDGRKG-W--------PEFAPYDAIHVGAAAPEIPQ--------ALIDQLKPGGRMV 171 (215)
Q Consensus 132 ~d~~~~-~--------~~~~~~D~V~~~~~~~~~~~--------~~~~~Lk~gG~lv 171 (215)
+|+.+. + ...+...++++-+.+..+.. .+.+.. |+|.++
T Consensus 174 ~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v 229 (334)
T 1rjd_A 174 CDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWI 229 (334)
T ss_dssp CCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEE
T ss_pred cCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEE
Confidence 998762 2 11134556676666644332 233333 777765
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=88.19 E-value=3.2 Score=30.54 Aligned_cols=90 Identities=19% Similarity=0.098 Sum_probs=52.2
Q ss_pred CEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----CCCCc
Q 028002 70 MHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EFAPY 144 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~~ 144 (215)
++|+-+|+|. .+..+++.+. ....|+.+|.++..++...+. ....++.+|..+... ....+
T Consensus 1 M~iiIiG~G~--~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~------------~~~~~i~gd~~~~~~l~~a~i~~a 66 (218)
T 3l4b_C 1 MKVIIIGGET--TAYYLARSMLSRKYGVVIINKDRELCEEFAKK------------LKATIIHGDGSHKEILRDAEVSKN 66 (218)
T ss_dssp CCEEEECCHH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH------------SSSEEEESCTTSHHHHHHHTCCTT
T ss_pred CEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH------------cCCeEEEcCCCCHHHHHhcCcccC
Confidence 3577888754 4444443331 126899999999877654322 245678888765210 12578
Q ss_pred cEEEEccCCCCch---HHHHHhcCCCcEEEEE
Q 028002 145 DAIHVGAAAPEIP---QALIDQLKPGGRMVIP 173 (215)
Q Consensus 145 D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~~ 173 (215)
|.|++........ ....+.+.+...++.-
T Consensus 67 d~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~ 98 (218)
T 3l4b_C 67 DVVVILTPRDEVNLFIAQLVMKDFGVKRVVSL 98 (218)
T ss_dssp CEEEECCSCHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred CEEEEecCCcHHHHHHHHHHHHHcCCCeEEEE
Confidence 9988776554322 2233445555666553
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.12 E-value=1.6 Score=35.43 Aligned_cols=105 Identities=12% Similarity=0.109 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+.. ...+.+||.++.+.|.++..++.. .++.+.-|-......+.|+..++.. ...+.+... .
T Consensus 27 ~~ll~~~~~-~~~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~----~~~~~~~~~--~ 94 (375)
T 4dcm_A 27 EYLLQQLDD-TEIRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGID----ESSVKFLDS--T 94 (375)
T ss_dssp HHHHHTTTT-CCCCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCC----GGGSEEEET--T
T ss_pred HHHHHhhhh-ccCCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCC----ccceEeccc--c
Confidence 344444432 234568999999999999888643 2345533555555667777776643 123555432 2
Q ss_pred CCCCCCCCccEEEEccCCC-----CchHHHHHhcCCCcEEEEEe
Q 028002 136 KGWPEFAPYDAIHVGAAAP-----EIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~-----~~~~~~~~~Lk~gG~lv~~~ 174 (215)
+.. ...||+|+.--+-. ..+..+...|++|+.+++..
T Consensus 95 ~~~--~~~~~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g 136 (375)
T 4dcm_A 95 ADY--PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA 136 (375)
T ss_dssp SCC--CSSCSEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred ccc--ccCCCEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence 222 26799987765532 23356778899999997754
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=87.86 E-value=1.6 Score=35.13 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=46.6
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+|+-+|||. |......+.+.|. ++++.+|.+. ...+.+.+++....- .-++.
T Consensus 36 ~~~VlivG~GGlG~~ia~~La~~Gv-g~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp-----~v~v~ 109 (346)
T 1y8q_A 36 ASRVLLVGLKGLGAEIAKNLILAGV-KGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNP-----MVDVK 109 (346)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCT-----TSEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCC-----CeEEE
Confidence 57999999985 6544443334355 7899998653 345666667665321 12455
Q ss_pred EEeCCCCCCCC-CCCCccEEEEccCCC
Q 028002 129 VHVGDGRKGWP-EFAPYDAIHVGAAAP 154 (215)
Q Consensus 129 ~~~~d~~~~~~-~~~~~D~V~~~~~~~ 154 (215)
....+...... -...||+|+......
T Consensus 110 ~~~~~~~~~~~~~~~~~dvVv~~~d~~ 136 (346)
T 1y8q_A 110 VDTEDIEKKPESFFTQFDAVCLTCCSR 136 (346)
T ss_dssp EECSCGGGCCHHHHTTCSEEEEESCCH
T ss_pred EEecccCcchHHHhcCCCEEEEcCCCH
Confidence 55444432111 014799998776543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=87.76 E-value=0.98 Score=36.47 Aligned_cols=70 Identities=10% Similarity=-0.063 Sum_probs=42.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC---CCCC
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~ 143 (215)
...++|+-+||| ..+..+++.+.....++..|.+...++.++ ..+..+..|+.+... ....
T Consensus 14 g~~mkilvlGaG--~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~--------------~~~~~~~~d~~d~~~l~~~~~~ 77 (365)
T 3abi_A 14 GRHMKVLILGAG--NIGRAIAWDLKDEFDVYIGDVNNENLEKVK--------------EFATPLKVDASNFDKLVEVMKE 77 (365)
T ss_dssp --CCEEEEECCS--HHHHHHHHHHTTTSEEEEEESCHHHHHHHT--------------TTSEEEECCTTCHHHHHHHHTT
T ss_pred CCccEEEEECCC--HHHHHHHHHHhcCCCeEEEEcCHHHHHHHh--------------ccCCcEEEecCCHHHHHHHHhC
Confidence 345789999984 455555555544578999999988776553 234445556543210 0145
Q ss_pred ccEEEEccC
Q 028002 144 YDAIHVGAA 152 (215)
Q Consensus 144 ~D~V~~~~~ 152 (215)
+|+|+...+
T Consensus 78 ~DvVi~~~p 86 (365)
T 3abi_A 78 FELVIGALP 86 (365)
T ss_dssp CSEEEECCC
T ss_pred CCEEEEecC
Confidence 798877654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=87.49 E-value=3.2 Score=32.18 Aligned_cols=77 Identities=14% Similarity=0.093 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHH-HHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC------
Q 028002 68 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPEL-VVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------ 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~-~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------ 139 (215)
.+.++|-.|++.| ++..+++.+ ....+|+.++.++.. .+...+.+...+ .++.++.+|+.+...
T Consensus 46 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------~~~~~~~~Dv~d~~~v~~~~~ 117 (291)
T 3ijr_A 46 KGKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG-------VKCVLLPGDLSDEQHCKDIVQ 117 (291)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT-------CCEEEEESCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC-------CcEEEEECCCCCHHHHHHHHH
Confidence 3578888887654 344443333 112689999987653 344444343322 478888999876211
Q ss_pred ----CCCCccEEEEccC
Q 028002 140 ----EFAPYDAIHVGAA 152 (215)
Q Consensus 140 ----~~~~~D~V~~~~~ 152 (215)
..+..|+++.+..
T Consensus 118 ~~~~~~g~iD~lvnnAg 134 (291)
T 3ijr_A 118 ETVRQLGSLNILVNNVA 134 (291)
T ss_dssp HHHHHHSSCCEEEECCC
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1146899887754
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=87.26 E-value=1.6 Score=33.92 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-----
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----- 139 (215)
+++.+|--|++.|. .+..+++. | .+|+.+|.+++.++.+.+.+. .+...+.+|+.+...
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~-G--a~V~i~~r~~~~l~~~~~~~g----------~~~~~~~~Dv~~~~~v~~~~ 94 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAE-G--ARVFITGRRKDVLDAAIAEIG----------GGAVGIQADSANLAELDRLY 94 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHC----------TTCEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHcC----------CCeEEEEecCCCHHHHHHHH
Confidence 46788888887763 33344444 3 789999999988776655442 356777888875211
Q ss_pred -----CCCCccEEEEccCC
Q 028002 140 -----EFAPYDAIHVGAAA 153 (215)
Q Consensus 140 -----~~~~~D~V~~~~~~ 153 (215)
..+..|+++.+...
T Consensus 95 ~~~~~~~G~iDiLVNNAG~ 113 (273)
T 4fgs_A 95 EKVKAEAGRIDVLFVNAGG 113 (273)
T ss_dssp HHHHHHHSCEEEEEECCCC
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 12578988877643
|
| >3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=87.21 E-value=2.5 Score=27.86 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=28.8
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEEeCC
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+.||+|+..+......+++.+...+.|.=+..++.
T Consensus 52 ~~~DvvLLgPQV~y~~~~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 52 GVYDLIILAPQVRSYYREMKVDAERLGIQIVATRG 86 (108)
T ss_dssp GGCSEEEECGGGGGGHHHHHHHHTTTTCEEEECCH
T ss_pred cCCCEEEEChHHHHHHHHHHHHhhhcCCcEEEeCH
Confidence 56999999999999999999988887876665543
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=87.18 E-value=6.6 Score=30.93 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=42.0
Q ss_pred CCCEEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 68 PGMHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+..+|.-+|+|. |. ++..++.. +...+++.+|+++...+.....+..... .....+.+...+. .. ....|
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~-~~~~ev~l~Di~~~~~~~~~~dl~~~~~---~~~~~~~i~~~~~-~a---l~~aD 76 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQ-GIADEIVLIDANESKAIGDAMDFNHGKV---FAPKPVDIWHGDY-DD---CRDAD 76 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSHHHHHHHHHHHHHHTT---SSSSCCEEEECCG-GG---TTTCS
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCCCEEEEEeCCcchHHHHHhhHHHHhh---hcCCCeEEEcCcH-HH---hCCCC
Confidence 346899999987 44 33333333 4346899999998755432222222110 1111444443322 21 24589
Q ss_pred EEEEccCC
Q 028002 146 AIHVGAAA 153 (215)
Q Consensus 146 ~V~~~~~~ 153 (215)
+|+.....
T Consensus 77 vViia~~~ 84 (316)
T 1ldn_A 77 LVVICAGA 84 (316)
T ss_dssp EEEECCSC
T ss_pred EEEEcCCC
Confidence 99888654
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=87.07 E-value=5.6 Score=30.24 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=47.7
Q ss_pred CEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028002 70 MHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
++||-.|+ |.++..+++.+- ...+|++++.++....... . .+++++.+|..+.. ...+|.|+
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~---------~~~~~~~~D~~d~~--~~~~d~vi 68 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR----A---------SGAEPLLWPGEEPS--LDGVTHLL 68 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH----H---------TTEEEEESSSSCCC--CTTCCEEE
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh----h---------CCCeEEEecccccc--cCCCCEEE
Confidence 68999994 888887777662 2268999999886544322 1 47888999987743 46789998
Q ss_pred EccCC
Q 028002 149 VGAAA 153 (215)
Q Consensus 149 ~~~~~ 153 (215)
.....
T Consensus 69 ~~a~~ 73 (286)
T 3ius_A 69 ISTAP 73 (286)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 77654
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=87.01 E-value=2.3 Score=35.85 Aligned_cols=87 Identities=14% Similarity=0.003 Sum_probs=55.9
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
-.+.+|.-+|.|. |......++.+| .+|+++|.++.....+. . ..+.+ .+..+.. ...|
T Consensus 255 l~GktVgIIG~G~IG~~vA~~l~~~G--~~Viv~d~~~~~~~~a~----~---------~g~~~--~~l~ell---~~aD 314 (479)
T 1v8b_A 255 ISGKIVVICGYGDVGKGCASSMKGLG--ARVYITEIDPICAIQAV----M---------EGFNV--VTLDEIV---DKGD 314 (479)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHHT--CEEEEECSCHHHHHHHH----T---------TTCEE--CCHHHHT---TTCS
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhCc--CEEEEEeCChhhHHHHH----H---------cCCEe--cCHHHHH---hcCC
Confidence 4578999999986 666666666655 68999999986542221 1 12222 1222211 4579
Q ss_pred EEEEccCCCCch-HHHHHhcCCCcEEEEE
Q 028002 146 AIHVGAAAPEIP-QALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~-~~~~~~Lk~gG~lv~~ 173 (215)
+|+......+++ .+..+.+|+|++|+=.
T Consensus 315 iVi~~~~t~~lI~~~~l~~MK~gailiNv 343 (479)
T 1v8b_A 315 FFITCTGNVDVIKLEHLLKMKNNAVVGNI 343 (479)
T ss_dssp EEEECCSSSSSBCHHHHTTCCTTCEEEEC
T ss_pred EEEECCChhhhcCHHHHhhcCCCcEEEEe
Confidence 998886666655 5677889998877643
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=86.95 E-value=1.9 Score=30.53 Aligned_cols=95 Identities=18% Similarity=0.106 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC-----CC
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-----FA 142 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~ 142 (215)
....|||+|-|+|..--.+...+ |+..++++|..-..-. ..-.+.-.++.+|+.+..+. ..
T Consensus 40 ~~GpVlElGLGNGRTydHLRe~~-P~R~I~vfDR~~~~hp-------------~~~P~~e~~ilGdi~~tL~~~~~r~g~ 105 (174)
T 3iht_A 40 LSGPVYELGLGNGRTYHHLRQHV-QGREIYVFERAVASHP-------------DSTPPEAQLILGDIRETLPATLERFGA 105 (174)
T ss_dssp CCSCEEEECCTTCHHHHHHHHHC-CSSCEEEEESSCCCCG-------------GGCCCGGGEEESCHHHHHHHHHHHHCS
T ss_pred CCCceEEecCCCChhHHHHHHhC-CCCcEEEEEeeeccCC-------------CCCCchHheecccHHHHHHHHHHhcCC
Confidence 34689999999999999999997 6689999995321100 01112334555554433221 12
Q ss_pred CccEEEEccCCC----------CchHHHHHhcCCCcEEEEEeCC
Q 028002 143 PYDAIHVGAAAP----------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 143 ~~D~V~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+.-+++++.... ++...+..+|.|||.++-..+-
T Consensus 106 ~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 106 TASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp CEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred ceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 333344443332 2335567899999999875444
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.80 E-value=7.8 Score=29.91 Aligned_cols=79 Identities=14% Similarity=0.067 Sum_probs=50.5
Q ss_pred CCEEEEEcCCccHHHHHH----HHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-----
Q 028002 69 GMHALDIGSGTGYLTACF----ALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----- 139 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l----~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----- 139 (215)
+.++|-.|++.| ++..+ ++......+|+.++.+...++...+.+..... ..++.++.+|+.+...
T Consensus 33 ~k~~lVTGas~G-IG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~Dv~d~~~v~~~~ 106 (287)
T 3rku_A 33 KKTVLITGASAG-IGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFP-----NAKVHVAQLDITQAEKIKPFI 106 (287)
T ss_dssp TCEEEEESTTSH-HHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCT-----TCEEEEEECCTTCGGGHHHHH
T ss_pred CCEEEEecCCCh-HHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCC-----CCeEEEEECCCCCHHHHHHHH
Confidence 578998887654 33333 44321112899999999888877766654311 1467888888875221
Q ss_pred -----CCCCccEEEEccCC
Q 028002 140 -----EFAPYDAIHVGAAA 153 (215)
Q Consensus 140 -----~~~~~D~V~~~~~~ 153 (215)
..+..|+++.+...
T Consensus 107 ~~~~~~~g~iD~lVnnAG~ 125 (287)
T 3rku_A 107 ENLPQEFKDIDILVNNAGK 125 (287)
T ss_dssp HTSCGGGCSCCEEEECCCC
T ss_pred HHHHHhcCCCCEEEECCCc
Confidence 12478999887653
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=86.77 E-value=0.69 Score=35.42 Aligned_cols=34 Identities=26% Similarity=0.248 Sum_probs=23.8
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP 103 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~ 103 (215)
+.+|+-+|||. |......+.+.|. ++++.+|.+.
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~Gv-g~i~lvD~d~ 62 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGAGV-GTLVLADDDD 62 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTC-SEEEEECCCB
T ss_pred cCcEEEEccCHHHHHHHHHHHHcCC-CeEEEEeCCC
Confidence 57999999985 6554444444455 7899998764
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.63 E-value=4.8 Score=30.77 Aligned_cols=99 Identities=18% Similarity=0.165 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecC-hHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC------
Q 028002 68 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHI-PELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------ 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------ 139 (215)
.+.++|-.|++.| ++..+++.+ ....+|+.++.+ ....+...+.+...+ .++.++.+|..+...
T Consensus 30 ~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~Dv~d~~~v~~~~~ 101 (271)
T 3v2g_A 30 AGKTAFVTGGSRG-IGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG-------GRAVAIRADNRDAEAIEQAIR 101 (271)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-------CcEEEEECCCCCHHHHHHHHH
Confidence 4678888887665 333333332 112578887554 455555555554432 477888888875211
Q ss_pred ----CCCCccEEEEccCCCC-------------------------chHHHHHhcCCCcEEEEEe
Q 028002 140 ----EFAPYDAIHVGAAAPE-------------------------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 140 ----~~~~~D~V~~~~~~~~-------------------------~~~~~~~~Lk~gG~lv~~~ 174 (215)
..+..|+++.+..... +.+.+.+.++.+|.++...
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 102 ETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred HHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 1147899988765311 1124566777888887753
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=86.08 E-value=8.3 Score=28.57 Aligned_cols=93 Identities=12% Similarity=-0.075 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCCCC
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAP 143 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~ 143 (215)
...+|+-+|+ |..+..+++.+...+.|+++|.++..++.++ ..+.++.+|..+.. .....
T Consensus 8 ~~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~--------------~~~~~i~gd~~~~~~l~~a~i~~ 71 (234)
T 2aef_A 8 KSRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR--------------SGANFVHGDPTRVSDLEKANVRG 71 (234)
T ss_dssp --CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH--------------TTCEEEESCTTCHHHHHHTTCTT
T ss_pred CCCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh--------------cCCeEEEcCCCCHHHHHhcCcch
Confidence 3568999987 5666777776633222999999988765543 14678888876421 12357
Q ss_pred ccEEEEccCCCCc---hHHHHHhcCCCcEEEEEeCC
Q 028002 144 YDAIHVGAAAPEI---PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 144 ~D~V~~~~~~~~~---~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|.|++..+-... .....+.+.|+..++.-+.+
T Consensus 72 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~ 107 (234)
T 2aef_A 72 ARAVIVDLESDSETIHCILGIRKIDESVRIIAEAER 107 (234)
T ss_dssp CSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEECSS
T ss_pred hcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 8988877654321 12345567777677765543
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=85.89 E-value=11 Score=29.43 Aligned_cols=39 Identities=26% Similarity=0.114 Sum_probs=25.2
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHH
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVV 107 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~ 107 (215)
.++|.-+|+|. |......+...+...+|+.+|.++..++
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~ 46 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVE 46 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHH
Confidence 47899999987 5433333323232238999999986655
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=85.82 E-value=4 Score=31.08 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=58.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEec-ChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC------
Q 028002 68 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEH-IPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------ 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~-s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------ 139 (215)
.+.++|-.|++.| ++..+++.+ ....+|+.++. +....+...+.+...+ .++.++.+|+.+...
T Consensus 17 ~~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~ 88 (270)
T 3is3_A 17 DGKVALVTGSGRG-IGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG-------SDAIAIKADIRQVPEIVKLFD 88 (270)
T ss_dssp TTCEEEESCTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------CCEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-------CcEEEEEcCCCCHHHHHHHHH
Confidence 3568888886654 344443333 11257887765 4555555555554432 478888899876211
Q ss_pred ----CCCCccEEEEccCCCC-------------------------chHHHHHhcCCCcEEEEEeC
Q 028002 140 ----EFAPYDAIHVGAAAPE-------------------------IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 140 ----~~~~~D~V~~~~~~~~-------------------------~~~~~~~~Lk~gG~lv~~~~ 175 (215)
..+..|+++.+..... +.+.+.+.++.+|.++....
T Consensus 89 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 89 QAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 1146899887765311 11345667788888877543
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=85.51 E-value=9.5 Score=30.55 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=24.5
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP 103 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~ 103 (215)
+.+||-+|||. |......+...|- ++++.+|.+.
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGV-g~ItlvD~D~ 68 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNGT 68 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEecCCE
Confidence 57999999996 6555544444455 7899998764
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=85.50 E-value=7.5 Score=30.09 Aligned_cols=74 Identities=15% Similarity=0.033 Sum_probs=46.4
Q ss_pred CCEEEEEcCCc-cHH----HHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----
Q 028002 69 GMHALDIGSGT-GYL----TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---- 139 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~----~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---- 139 (215)
+.++|-.|++. ..+ +..+++. | .+|+.++.++...+...+..... ..+.++.+|+.+...
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~-G--~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~Dv~d~~~v~~~ 98 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQ-G--AEVALTYLSETFKKRVDPLAESL--------GVKLTVPCDVSDAESVDNM 98 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHT-T--CEEEEEESSGGGHHHHHHHHHHH--------TCCEEEECCTTCHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHC-C--CEEEEEeCChHHHHHHHHHHHhc--------CCeEEEEcCCCCHHHHHHH
Confidence 57899999754 233 3344444 3 68999999876655555444332 245788888876211
Q ss_pred ------CCCCccEEEEccCC
Q 028002 140 ------EFAPYDAIHVGAAA 153 (215)
Q Consensus 140 ------~~~~~D~V~~~~~~ 153 (215)
..+..|+++.+...
T Consensus 99 ~~~~~~~~g~iD~lVnnAG~ 118 (296)
T 3k31_A 99 FKVLAEEWGSLDFVVHAVAF 118 (296)
T ss_dssp HHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHcCCCCEEEECCCc
Confidence 11478999887754
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=85.37 E-value=3.5 Score=32.01 Aligned_cols=78 Identities=15% Similarity=0.033 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecCh--HHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-----
Q 028002 68 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIP--ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----- 139 (215)
.+.++|-.|++.| ++..+++.+ ....+|+.++.+. ...+...+.+...+ .++.++.+|+.+...
T Consensus 48 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Dv~d~~~v~~~~ 119 (294)
T 3r3s_A 48 KDRKALVTGGDSG-IGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG-------RKAVLLPGDLSDESFARSLV 119 (294)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT-------CCEEECCCCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC-------CcEEEEEecCCCHHHHHHHH
Confidence 3578888887654 444444333 1126788888763 34444444444332 467888888875211
Q ss_pred -----CCCCccEEEEccCC
Q 028002 140 -----EFAPYDAIHVGAAA 153 (215)
Q Consensus 140 -----~~~~~D~V~~~~~~ 153 (215)
..+..|+++.+...
T Consensus 120 ~~~~~~~g~iD~lv~nAg~ 138 (294)
T 3r3s_A 120 HKAREALGGLDILALVAGK 138 (294)
T ss_dssp HHHHHHHTCCCEEEECCCC
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 11478998877654
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=85.07 E-value=2.8 Score=32.13 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC------
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~------ 138 (215)
+++.+|--|++.|. .+..+++. | .+|+..|.+++.++...+.+...+ .++..+.+|+.+..
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~-G--a~Vvi~~~~~~~~~~~~~~l~~~g-------~~~~~~~~Dv~~~~~v~~~~ 77 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAA-G--ARVILNDIRATLLAESVDTLTRKG-------YDAHGVAFDVTDELAIEAAF 77 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-T--CEEEECCSCHHHHHHHHHHHHHTT-------CCEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEeeCCCHHHHHHHH
Confidence 46788888877653 33334444 2 789999999998888877776644 46778888887621
Q ss_pred ----CCCCCccEEEEccCC
Q 028002 139 ----PEFAPYDAIHVGAAA 153 (215)
Q Consensus 139 ----~~~~~~D~V~~~~~~ 153 (215)
...+..|+++.+...
T Consensus 78 ~~~~~~~G~iDiLVNNAG~ 96 (255)
T 4g81_D 78 SKLDAEGIHVDILINNAGI 96 (255)
T ss_dssp HHHHHTTCCCCEEEECCCC
T ss_pred HHHHHHCCCCcEEEECCCC
Confidence 123678999888754
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=85.01 E-value=3.2 Score=35.08 Aligned_cols=87 Identities=13% Similarity=-0.002 Sum_probs=54.5
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
-.+.+|.-+|.|. |......++.+| .+|+++|.++.....+. . ..+.+ .+..+.. ...|
T Consensus 275 L~GktVgIIG~G~IG~~vA~~l~~~G--~~V~v~d~~~~~~~~a~----~---------~G~~~--~~l~ell---~~aD 334 (494)
T 3d64_A 275 IAGKIAVVAGYGDVGKGCAQSLRGLG--ATVWVTEIDPICALQAA----M---------EGYRV--VTMEYAA---DKAD 334 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTT--CEEEEECSCHHHHHHHH----T---------TTCEE--CCHHHHT---TTCS
T ss_pred cCCCEEEEEccCHHHHHHHHHHHHCC--CEEEEEeCChHhHHHHH----H---------cCCEe--CCHHHHH---hcCC
Confidence 4578999999886 665555555544 68999999986532221 1 12222 1222211 4579
Q ss_pred EEEEccCCCCch-HHHHHhcCCCcEEEEE
Q 028002 146 AIHVGAAAPEIP-QALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~~~~-~~~~~~Lk~gG~lv~~ 173 (215)
+|+......+++ .+..+.+|+|.+|+=.
T Consensus 335 iVi~~~~t~~lI~~~~l~~MK~gAilINv 363 (494)
T 3d64_A 335 IFVTATGNYHVINHDHMKAMRHNAIVCNI 363 (494)
T ss_dssp EEEECSSSSCSBCHHHHHHCCTTEEEEEC
T ss_pred EEEECCCcccccCHHHHhhCCCCcEEEEc
Confidence 998876555555 5778899998776643
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=84.83 E-value=2.7 Score=34.12 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=31.2
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 111 (215)
-.+.+|+-+|+|. |......+...| .+|++.|.++..++...+
T Consensus 171 L~GktV~V~G~G~VG~~~A~~L~~~G--akVvv~D~~~~~l~~~a~ 214 (364)
T 1leh_A 171 LEGLAVSVQGLGNVAKALCKKLNTEG--AKLVVTDVNKAAVSAAVA 214 (364)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH
T ss_pred CCcCEEEEECchHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH
Confidence 3578999999987 666555555545 579999999887664443
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=84.77 E-value=5.8 Score=31.19 Aligned_cols=95 Identities=16% Similarity=0.102 Sum_probs=49.2
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc-CcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 70 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA-PLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 70 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
++|.-+|+|. |. ++..+++. | .+|+.++.++ .+.. +..+.. .........+.......... ....+|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~-g--~~V~~~~r~~--~~~i----~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D 73 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT-G--HCVSVVSRSD--YETV----KAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD 73 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT-T--CEEEEECSTT--HHHH----HHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC-C--CeEEEEeCCh--HHHH----HhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence 5799999997 43 44444544 3 6899999876 2333 222211 00001222221111111111 113689
Q ss_pred EEEEccCCC---CchHHHHHhcCCCcEEEEE
Q 028002 146 AIHVGAAAP---EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 146 ~V~~~~~~~---~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|+..-... .+.+.+...++++..++..
T Consensus 74 lVilavK~~~~~~~l~~l~~~l~~~t~Iv~~ 104 (320)
T 3i83_A 74 CTLLCIKVVEGADRVGLLRDAVAPDTGIVLI 104 (320)
T ss_dssp EEEECCCCCTTCCHHHHHTTSCCTTCEEEEE
T ss_pred EEEEecCCCChHHHHHHHHhhcCCCCEEEEe
Confidence 998776543 4556667777777765543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.65 E-value=8.8 Score=29.44 Aligned_cols=80 Identities=13% Similarity=0.035 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC-CC------
Q 028002 68 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-WP------ 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~------ 139 (215)
.+.++|-.|++.| ++..+++.+ ....+|++++.++...+.+.+.+...+ ..++.++..|+.+. ..
T Consensus 11 ~~k~vlITGas~G-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~Dl~~~~~~v~~~~~ 83 (311)
T 3o26_A 11 KRRCAVVTGGNKG-IGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN------HENVVFHQLDVTDPIATMSSLAD 83 (311)
T ss_dssp -CCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------CCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEecCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CCceEEEEccCCCcHHHHHHHHH
Confidence 3567888876654 444444433 112689999999988777766665432 14788999998774 10
Q ss_pred ----CCCCccEEEEccCCC
Q 028002 140 ----EFAPYDAIHVGAAAP 154 (215)
Q Consensus 140 ----~~~~~D~V~~~~~~~ 154 (215)
..+..|+++.+....
T Consensus 84 ~~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 84 FIKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHHHSSCCEEEECCCCC
T ss_pred HHHHhCCCCCEEEECCccc
Confidence 014789999887653
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=84.55 E-value=2.8 Score=28.12 Aligned_cols=92 Identities=14% Similarity=0.115 Sum_probs=49.1
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC--CC--CCCC
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WP--EFAP 143 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~--~~~~ 143 (215)
+.+|+-+|+|. |......+...| .+++++|.++...+.+++ ....++.+|..+. +. ....
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g--~~v~~~d~~~~~~~~~~~-------------~~~~~~~~d~~~~~~l~~~~~~~ 70 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMG--HEVLAVDINEEKVNAYAS-------------YATHAVIANATEENELLSLGIRN 70 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCCEEEESCHHHHHTTTT-------------TCSEEEECCTTCHHHHHTTTGGG
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-------------hCCEEEEeCCCCHHHHHhcCCCC
Confidence 45799999864 433333333323 579999998765443221 1234556665431 00 1246
Q ss_pred ccEEEEccCCC-Cch---HHHHHhcCCCcEEEEEeCC
Q 028002 144 YDAIHVGAAAP-EIP---QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 144 ~D~V~~~~~~~-~~~---~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+|+...... +.. ....+.+.+. .+++...+
T Consensus 71 ~d~vi~~~~~~~~~~~~~~~~~~~~~~~-~ii~~~~~ 106 (144)
T 2hmt_A 71 FEYVIVAIGANIQASTLTTLLLKELDIP-NIWVKAQN 106 (144)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHHTTCS-EEEEECCS
T ss_pred CCEEEECCCCchHHHHHHHHHHHHcCCC-eEEEEeCC
Confidence 89998877654 221 2234445665 66554443
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.44 E-value=2.6 Score=38.97 Aligned_cols=76 Identities=9% Similarity=-0.007 Sum_probs=45.1
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
+.+||-+|||. |......+.+.|- ++++.+|.+. ...+.+++++.... +.-.+.
T Consensus 27 ~s~VlIvG~GGlGseiak~La~aGV-g~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lN-----P~v~v~ 100 (1015)
T 3cmm_A 27 TSNVLILGLKGLGVEIAKNVVLAGV-KSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELN-----AYVPVN 100 (1015)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHCC-SEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSC-----TTSCEE
T ss_pred cCEEEEECCChHHHHHHHHHHHcCC-CeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHC-----CCCeEE
Confidence 57999999975 6544433333365 7899999662 23555666665432 112445
Q ss_pred EEeCCCCCCCCCCCCccEEEEccC
Q 028002 129 VHVGDGRKGWPEFAPYDAIHVGAA 152 (215)
Q Consensus 129 ~~~~d~~~~~~~~~~~D~V~~~~~ 152 (215)
........... ..||+|+....
T Consensus 101 ~~~~~l~~~~l--~~~DvVv~~~d 122 (1015)
T 3cmm_A 101 VLDSLDDVTQL--SQFQVVVATDT 122 (1015)
T ss_dssp ECCCCCCSTTG--GGCSEEEECTT
T ss_pred EecCCCCHHHH--hcCCEEEEcCC
Confidence 44444432222 47999997755
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=84.43 E-value=4.3 Score=33.74 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=42.0
Q ss_pred CCCEEEEEcCCccHHH-HHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 68 PGMHALDIGSGTGYLT-ACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~-~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
++.+|+-+|.|....+ ..++...| .+|++.|..+.......+.+.. ..+.+..+........ +.+|+
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G--~~V~~~D~~~~~~~~~~~~L~~---------~gi~~~~g~~~~~~~~-~~~d~ 75 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLG--AIVTVNDGKPFDENPTAQSLLE---------EGIKVVCGSHPLELLD-EDFCY 75 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTT--CEEEEEESSCGGGCHHHHHHHH---------TTCEEEESCCCGGGGG-SCEEE
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEeCCcccCChHHHHHHh---------CCCEEEECCChHHhhc-CCCCE
Confidence 4678999999864433 33333334 7999999865311112233443 3456665543221111 23899
Q ss_pred EEEccCCC
Q 028002 147 IHVGAAAP 154 (215)
Q Consensus 147 V~~~~~~~ 154 (215)
|+.++..+
T Consensus 76 vv~spgi~ 83 (451)
T 3lk7_A 76 MIKNPGIP 83 (451)
T ss_dssp EEECTTSC
T ss_pred EEECCcCC
Confidence 98887663
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.30 E-value=6.3 Score=29.35 Aligned_cols=77 Identities=14% Similarity=-0.012 Sum_probs=50.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---------
Q 028002 69 GMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--------- 138 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--------- 138 (215)
++++|-.|++.| ++..+++.+ ....+|+.++.++...+...+.+...+ .++.++..|..+..
T Consensus 5 ~k~vlITGas~g-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~ 76 (247)
T 3lyl_A 5 EKVALVTGASRG-IGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG-------FKARGLVLNISDIESIQNFFAEI 76 (247)
T ss_dssp TCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CceEEEEecCCCHHHHHHHHHHH
Confidence 567888876544 444444333 112689999999988877776665543 47888888887521
Q ss_pred -CCCCCccEEEEccCC
Q 028002 139 -PEFAPYDAIHVGAAA 153 (215)
Q Consensus 139 -~~~~~~D~V~~~~~~ 153 (215)
...+..|+++.+...
T Consensus 77 ~~~~~~id~li~~Ag~ 92 (247)
T 3lyl_A 77 KAENLAIDILVNNAGI 92 (247)
T ss_dssp HHTTCCCSEEEECCCC
T ss_pred HHHcCCCCEEEECCCC
Confidence 112468999877654
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=84.15 E-value=10 Score=29.81 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=40.4
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 70 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 70 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
++|.-+|+|. |. ++..++.. +...+++.+|+++..++.....+... .. +. ....+...+. .. ....|+|
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~-g~~~~V~l~D~~~~~~~~~~~~l~~~-~~--~~-~~~~i~~~d~-~~---~~~aDvV 71 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMK-GFAREMVLIDVDKKRAEGDALDLIHG-TP--FT-RRANIYAGDY-AD---LKGSDVV 71 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECSSHHHHHHHHHHHHHH-GG--GS-CCCEEEECCG-GG---GTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCCCeEEEEeCChHHHHHHHHHHHhh-hh--hc-CCcEEEeCCH-HH---hCCCCEE
Confidence 3678899986 43 33334444 32248999999988776544333221 10 00 1223333331 11 2468999
Q ss_pred EEccCC
Q 028002 148 HVGAAA 153 (215)
Q Consensus 148 ~~~~~~ 153 (215)
+.....
T Consensus 72 iiav~~ 77 (319)
T 1a5z_A 72 IVAAGV 77 (319)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 877664
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=83.35 E-value=9.3 Score=29.19 Aligned_cols=77 Identities=14% Similarity=0.095 Sum_probs=44.6
Q ss_pred CCEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHH-HHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-------
Q 028002 69 GMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPEL-VVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------- 139 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~-~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------- 139 (215)
+.++|-.|++. .++..+++.+- ...+|++++.++.. .+...+.+...+ .++.++.+|..+...
T Consensus 29 ~k~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~ 100 (283)
T 1g0o_A 29 GKVALVTGAGR-GIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG-------SDAACVKANVGVVEDIVRMFEE 100 (283)
T ss_dssp TCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC-------CCeEEEEcCCCCHHHHHHHHHH
Confidence 56788777654 44444444331 12689998887643 344334443322 467888888765210
Q ss_pred ---CCCCccEEEEccCC
Q 028002 140 ---EFAPYDAIHVGAAA 153 (215)
Q Consensus 140 ---~~~~~D~V~~~~~~ 153 (215)
..+..|+++.+...
T Consensus 101 ~~~~~g~iD~lv~~Ag~ 117 (283)
T 1g0o_A 101 AVKIFGKLDIVCSNSGV 117 (283)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHcCCCCEEEECCCc
Confidence 11468999877654
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=83.31 E-value=9.5 Score=33.15 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=32.8
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhh
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKS 116 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~ 116 (215)
+.+||-+|||. |......+.+.|- ++++.+|.+. ...+.+++++...
T Consensus 326 ~arVLIVGaGGLGs~vA~~La~aGV-G~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~i 392 (615)
T 4gsl_A 326 NTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI 392 (615)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhh
Confidence 46999999996 6655444444455 7999999765 3456677777664
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=83.09 E-value=5.4 Score=30.54 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=48.6
Q ss_pred CEEEEEcCCc-cHH-HHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCC-CccE
Q 028002 70 MHALDIGSGT-GYL-TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA-PYDA 146 (215)
Q Consensus 70 ~~vLdiG~G~-G~~-~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~D~ 146 (215)
++|.-||+|. |.. +..+++. |...+|+++|.++..++.+++ .+. .. . ...+..+.. . ..|+
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~-g~~~~V~~~d~~~~~~~~~~~----~g~------~~-~-~~~~~~~~~---~~~aDv 65 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVD----LGI------ID-E-GTTSIAKVE---DFSPDF 65 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHH----TTS------CS-E-EESCGGGGG---GTCCSE
T ss_pred cEEEEEecCHHHHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHH----CCC------cc-c-ccCCHHHHh---cCCCCE
Confidence 3688899886 443 3333333 322379999999887765542 221 00 1 112221111 3 6899
Q ss_pred EEEccCCCC---chHHHHHhcCCCcEEEE
Q 028002 147 IHVGAAAPE---IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 147 V~~~~~~~~---~~~~~~~~Lk~gG~lv~ 172 (215)
|+...+... +.+.+...++++..++.
T Consensus 66 Vilavp~~~~~~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 66 VMLSSPVRTFREIAKKLSYILSEDATVTD 94 (281)
T ss_dssp EEECSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 987765543 33456667888775554
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=82.53 E-value=11 Score=29.24 Aligned_cols=85 Identities=16% Similarity=0.224 Sum_probs=48.5
Q ss_pred CCEEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 69 GMHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 69 ~~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.++|.-||+|. |. ++..+++. | .+|+++|.++..++...+. +. .....+..+.. ...|+
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~-G--~~V~~~dr~~~~~~~~~~~----g~---------~~~~~~~~e~~---~~aDv 67 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRA-G--LSTWGADLNPQACANLLAE----GA---------CGAAASAREFA---GVVDA 67 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T--CEEEEECSCHHHHHHHHHT----TC---------SEEESSSTTTT---TTCSE
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-C--CeEEEEECCHHHHHHHHHc----CC---------ccccCCHHHHH---hcCCE
Confidence 46899999986 43 44444444 3 6899999999877665431 21 11122322222 35798
Q ss_pred EEEccCCCCchHHH-------HHhcCCCcEEEE
Q 028002 147 IHVGAAAPEIPQAL-------IDQLKPGGRMVI 172 (215)
Q Consensus 147 V~~~~~~~~~~~~~-------~~~Lk~gG~lv~ 172 (215)
|+...+.....+.+ ...+++|..++-
T Consensus 68 vi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~ 100 (303)
T 3g0o_A 68 LVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMV 100 (303)
T ss_dssp EEECCSSHHHHHHHHC--CCCGGGSCTTCEEEE
T ss_pred EEEECCCHHHHHHHHhChhhHHhhCCCCCEEEe
Confidence 88776654333333 345666655543
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=81.97 E-value=9.5 Score=29.81 Aligned_cols=97 Identities=20% Similarity=0.272 Sum_probs=48.7
Q ss_pred CEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028002 70 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 70 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
++|.-+|+|. |......+...+...+++.+|+++..++.....+.. .. . +. ....+...+. . .....|+|+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~-~~-~-~~-~~~~i~~~~~-~---a~~~aDvVI 72 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAH-AA-P-VS-HGTRVWHGGH-S---ELADAQVVI 72 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTT-SC-C-TT-SCCEEEEECG-G---GGTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhh-hh-h-hc-CCeEEEECCH-H---HhCCCCEEE
Confidence 3688899987 443333333323334899999998766532222211 10 0 10 2233333232 1 124579998
Q ss_pred EccCCCC-------------------chHHHHHhcCCCcEEEEEeC
Q 028002 149 VGAAAPE-------------------IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 149 ~~~~~~~-------------------~~~~~~~~Lk~gG~lv~~~~ 175 (215)
.....+. +.+.+.++ .|++++++.++
T Consensus 73 i~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tN 117 (304)
T 2v6b_A 73 LTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSN 117 (304)
T ss_dssp ECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSS
T ss_pred EcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecC
Confidence 7764332 11334444 69998887443
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=81.86 E-value=5.2 Score=34.98 Aligned_cols=79 Identities=9% Similarity=0.003 Sum_probs=46.9
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh-------------------HHHHHHHHHHHhhcccCcccCCCeE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~-------------------~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
..+|+-+|||. |......+.+.|- ++++.+|.+. .-.+.+++++.... +.-++.
T Consensus 17 ~s~VlVVGaGGLGsevak~La~aGV-G~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iN-----P~v~V~ 90 (640)
T 1y8q_B 17 GGRVLVVGAGGIGCELLKNLVLTGF-SHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFY-----PKANIV 90 (640)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTC-CEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTC-----TTCEEE
T ss_pred cCeEEEECcCHHHHHHHHHHHHcCC-CeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHC-----CCCeEE
Confidence 47999999986 6544444334465 7899999654 22455566665432 113555
Q ss_pred EEeCCCCCCCCC---CCCccEEEEccCC
Q 028002 129 VHVGDGRKGWPE---FAPYDAIHVGAAA 153 (215)
Q Consensus 129 ~~~~d~~~~~~~---~~~~D~V~~~~~~ 153 (215)
.....+...... ...||+|+....-
T Consensus 91 a~~~~i~~~~~~~~~~~~~DlVvda~Dn 118 (640)
T 1y8q_B 91 AYHDSIMNPDYNVEFFRQFILVMNALDN 118 (640)
T ss_dssp EEESCTTSTTSCHHHHTTCSEEEECCSC
T ss_pred EEecccchhhhhHhhhcCCCEEEECCCC
Confidence 666655432111 1479999987543
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=81.52 E-value=9.6 Score=28.69 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-----
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----- 139 (215)
.+.++|-.|++.|. ++..+++. | .+|+.++.++...+...+.+...+ .++.++.+|..+...
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~-G--~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~Dv~d~~~v~~~~ 80 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKA-G--ASVVVTDLKSEGAEAVAAAIRQAG-------GKAIGLECNVTDEQHREAVI 80 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHH-T--CEEEEEESSHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-C--CEEEEEeCCHHHHHHHHHHHHhcC-------CcEEEEECCCCCHHHHHHHH
Confidence 35688888876652 33344444 3 689999999988877776665533 478888898876211
Q ss_pred -----CCCCccEEEEccCC
Q 028002 140 -----EFAPYDAIHVGAAA 153 (215)
Q Consensus 140 -----~~~~~D~V~~~~~~ 153 (215)
..+..|+++.+...
T Consensus 81 ~~~~~~~g~id~lv~nAg~ 99 (256)
T 3gaf_A 81 KAALDQFGKITVLVNNAGG 99 (256)
T ss_dssp HHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 11478999877653
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=81.21 E-value=2 Score=34.75 Aligned_cols=85 Identities=11% Similarity=0.010 Sum_probs=54.3
Q ss_pred CCCCEEEEE--cCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CC--
Q 028002 67 KPGMHALDI--GSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GW-- 138 (215)
Q Consensus 67 ~~~~~vLdi--G~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~-- 138 (215)
.++.+||-+ |+|. |..+..+++..| .+|++++.++..++.+++ .+. +.+ +.....+ ..
T Consensus 169 ~~g~~vlV~gag~G~vG~~a~q~a~~~G--a~Vi~~~~~~~~~~~~~~----lGa------~~~--~~~~~~~~~~~v~~ 234 (379)
T 3iup_A 169 LEGHSALVHTAAASNLGQMLNQICLKDG--IKLVNIVRKQEQADLLKA----QGA------VHV--CNAASPTFMQDLTE 234 (379)
T ss_dssp HTTCSCEEESSTTSHHHHHHHHHHHHHT--CCEEEEESSHHHHHHHHH----TTC------SCE--EETTSTTHHHHHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHh----CCC------cEE--EeCCChHHHHHHHH
Confidence 578899998 5554 777888888876 479999999998888764 332 111 1111111 00
Q ss_pred -CCCCCccEEEEccCCCCchHHHHHhcC
Q 028002 139 -PEFAPYDAIHVGAAAPEIPQALIDQLK 165 (215)
Q Consensus 139 -~~~~~~D~V~~~~~~~~~~~~~~~~Lk 165 (215)
.....+|+|+.........+.+.+.|+
T Consensus 235 ~t~~~g~d~v~d~~g~~~~~~~~~~~l~ 262 (379)
T 3iup_A 235 ALVSTGATIAFDATGGGKLGGQILTCME 262 (379)
T ss_dssp HHHHHCCCEEEESCEEESHHHHHHHHHH
T ss_pred HhcCCCceEEEECCCchhhHHHHHHhcc
Confidence 011369999988776666666666663
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=81.04 E-value=18 Score=28.43 Aligned_cols=99 Identities=17% Similarity=0.243 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
+..+|.-+|+|. |......+...+-..++..+|+++..++....-+.... . +. .++.+..++ ... ....|+
T Consensus 4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~-~--~~-~~~~v~~~~-~~a---~~~aDv 75 (318)
T 1ez4_A 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ-A--FT-APKKIYSGE-YSD---CKDADL 75 (318)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG-G--GS-CCCEEEECC-GGG---GTTCSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH-H--hc-CCeEEEECC-HHH---hCCCCE
Confidence 447899999986 44333333332333589999999877664222232211 0 11 344555432 221 245799
Q ss_pred EEEccCCCCch-------------------HHHHHhcCCCcEEEEEeC
Q 028002 147 IHVGAAAPEIP-------------------QALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 147 V~~~~~~~~~~-------------------~~~~~~Lk~gG~lv~~~~ 175 (215)
|+.....+.-+ +.+.+ ..|+|++++.++
T Consensus 76 Vii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~-~~p~a~iiv~tN 122 (318)
T 1ez4_A 76 VVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVD-SGFDGIFLVAAN 122 (318)
T ss_dssp EEECCCC----------CHHHHHHHHHHHHHHHHH-TTCCSEEEECSS
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEeCC
Confidence 98877553211 12223 379999998543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=80.78 E-value=9.6 Score=28.42 Aligned_cols=78 Identities=19% Similarity=0.151 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-------
Q 028002 68 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------- 139 (215)
.+.++|-.|++.| ++..+++.+ ....+|+.++.++...+...+.+...+ .++.++.+|+.+...
T Consensus 8 ~~k~vlITGas~g-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T 3qiv_A 8 ENKVGIVTGSGGG-IGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG-------GTAISVAVDVSDPESAKAMADR 79 (253)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------CEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------CcEEEEEccCCCHHHHHHHHHH
Confidence 3578888887654 444444333 112689999999988887777665532 467888888876211
Q ss_pred ---CCCCccEEEEccCC
Q 028002 140 ---EFAPYDAIHVGAAA 153 (215)
Q Consensus 140 ---~~~~~D~V~~~~~~ 153 (215)
..+..|+++.+...
T Consensus 80 ~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 80 TLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHcCCCCEEEECCCc
Confidence 11378999887654
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=80.78 E-value=6.8 Score=29.50 Aligned_cols=77 Identities=18% Similarity=0.147 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-------
Q 028002 68 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------- 139 (215)
.+.++|-.|++.| ++..+++.+ ....+|+.++.++..++...+.+...+ .++.++.+|+.+...
T Consensus 6 ~~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~ 77 (252)
T 3h7a_A 6 RNATVAVIGAGDY-IGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG-------GRIVARSLDARNEDEVTAFLNA 77 (252)
T ss_dssp CSCEEEEECCSSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT-------CEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CeEEEEECcCCCHHHHHHHHHH
Confidence 3578888887765 333333332 112689999999988887777666543 478888999875211
Q ss_pred ---CCCCccEEEEccCC
Q 028002 140 ---EFAPYDAIHVGAAA 153 (215)
Q Consensus 140 ---~~~~~D~V~~~~~~ 153 (215)
. +..|+++.+...
T Consensus 78 ~~~~-g~id~lv~nAg~ 93 (252)
T 3h7a_A 78 ADAH-APLEVTIFNVGA 93 (252)
T ss_dssp HHHH-SCEEEEEECCCC
T ss_pred HHhh-CCceEEEECCCc
Confidence 1 468988877654
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=80.77 E-value=18 Score=30.06 Aligned_cols=96 Identities=21% Similarity=0.189 Sum_probs=54.1
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh-------hcccCc--ccCCCeEEEeCCCCCCC
Q 028002 70 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-------SAAAPL--LKEGSLSVHVGDGRKGW 138 (215)
Q Consensus 70 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-------~~~~~~--~~~~~v~~~~~d~~~~~ 138 (215)
.+|.-||+|. |. ++..+++. | ..|+++|.++..++.+++.+.. .+.... .......+ ..+. +.
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~-G--~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~-~~- 111 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARV-G--ISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSST-KE- 111 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT-T--CEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCG-GG-
T ss_pred CEEEEECcCHHHHHHHHHHHhC-C--CeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCH-HH-
Confidence 5799999997 43 34444443 3 6899999999988877664321 110000 00011222 3332 11
Q ss_pred CCCCCccEEEEccCCC-----CchHHHHHhcCCCcEEEEE
Q 028002 139 PEFAPYDAIHVGAAAP-----EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~-----~~~~~~~~~Lk~gG~lv~~ 173 (215)
....|+|+..-+-. .+...+...++++..++.+
T Consensus 112 --~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~sn 149 (463)
T 1zcj_A 112 --LSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTN 149 (463)
T ss_dssp --GTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred --HCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeC
Confidence 14689988776542 2334566778887766543
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.62 E-value=12 Score=28.25 Aligned_cols=75 Identities=13% Similarity=0.041 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-----
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----- 139 (215)
.+.++|-.|++.|. ++..+++. | .+|+.++.++..++...+.+...+ .++.++.+|+.+...
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~-G--~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~ 79 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQ-G--ADLVLAARTVERLEDVAKQVTDTG-------RRALSVGTDITDDAQVAHLV 79 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHC-c--CEEEEEeCCHHHHHHHHHHHHhcC-------CcEEEEEcCCCCHHHHHHHH
Confidence 46789988887653 33344443 3 689999999988887777665533 478889999876211
Q ss_pred -----CCCCccEEEEccC
Q 028002 140 -----EFAPYDAIHVGAA 152 (215)
Q Consensus 140 -----~~~~~D~V~~~~~ 152 (215)
..+..|+++.+..
T Consensus 80 ~~~~~~~g~id~lv~nAg 97 (264)
T 3ucx_A 80 DETMKAYGRVDVVINNAF 97 (264)
T ss_dssp HHHHHHTSCCSEEEECCC
T ss_pred HHHHHHcCCCcEEEECCC
Confidence 1247899987763
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=80.41 E-value=16 Score=27.73 Aligned_cols=74 Identities=23% Similarity=0.217 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-----C
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-----P 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-----~ 139 (215)
+++.+|--|.+.|. .+..+++. | .+|+..|.+.. +.+.+.+...+ .++..+.+|+.+.. .
T Consensus 8 ~GKvalVTGas~GIG~aiA~~la~~-G--a~Vvi~~r~~~--~~~~~~~~~~g-------~~~~~~~~Dv~d~~~v~~~~ 75 (247)
T 4hp8_A 8 EGRKALVTGANTGLGQAIAVGLAAA-G--AEVVCAARRAP--DETLDIIAKDG-------GNASALLIDFADPLAAKDSF 75 (247)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-T--CEEEEEESSCC--HHHHHHHHHTT-------CCEEEEECCTTSTTTTTTSS
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHc-C--CEEEEEeCCcH--HHHHHHHHHhC-------CcEEEEEccCCCHHHHHHHH
Confidence 46788888877763 33344444 3 78999998754 23333344433 46778888876532 2
Q ss_pred CCCCccEEEEccCC
Q 028002 140 EFAPYDAIHVGAAA 153 (215)
Q Consensus 140 ~~~~~D~V~~~~~~ 153 (215)
..+..|+++.+...
T Consensus 76 ~~g~iDiLVNNAGi 89 (247)
T 4hp8_A 76 TDAGFDILVNNAGI 89 (247)
T ss_dssp TTTCCCEEEECCCC
T ss_pred HhCCCCEEEECCCC
Confidence 33679999888754
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=80.40 E-value=4.2 Score=32.28 Aligned_cols=44 Identities=30% Similarity=0.342 Sum_probs=32.2
Q ss_pred CCEEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh
Q 028002 69 GMHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 115 (215)
Q Consensus 69 ~~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 115 (215)
..+|--||+|+ |. .+..++.. | ..|+.+|++++.++.+.+++..
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~-G--~~V~l~D~~~~~l~~~~~~i~~ 51 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASG-G--FRVKLYDIEPRQITGALENIRK 51 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-T--CCEEEECSCHHHHHHHHHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-C--CeEEEEECCHHHHHHHHHHHHH
Confidence 46899999998 43 44444544 3 7899999999998887766643
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=80.07 E-value=11 Score=29.24 Aligned_cols=78 Identities=15% Similarity=0.058 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-------
Q 028002 68 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------- 139 (215)
.+.++|-.|++.| ++..+++.+ ....+|+.++.++..++.+.+.+...+ .++.++..|+.+...
T Consensus 30 ~gk~vlVTGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~Dv~d~~~v~~~~~~ 101 (301)
T 3tjr_A 30 DGRAAVVTGGASG-IGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG-------FDAHGVVCDVRHLDEMVRLADE 101 (301)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------CceEEEEccCCCHHHHHHHHHH
Confidence 4678898887755 333333332 112689999999998888777766533 478888999876211
Q ss_pred ---CCCCccEEEEccCC
Q 028002 140 ---EFAPYDAIHVGAAA 153 (215)
Q Consensus 140 ---~~~~~D~V~~~~~~ 153 (215)
..+..|+++.+...
T Consensus 102 ~~~~~g~id~lvnnAg~ 118 (301)
T 3tjr_A 102 AFRLLGGVDVVFSNAGI 118 (301)
T ss_dssp HHHHHSSCSEEEECCCC
T ss_pred HHHhCCCCCEEEECCCc
Confidence 01478999887654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=80.06 E-value=2.5 Score=35.36 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=46.6
Q ss_pred CCEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----CCCC
Q 028002 69 GMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EFAP 143 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~ 143 (215)
.++|+-+|||. .+..+++.+. .+..|+.+|.++..++.+.+.+ .+..+.+|..+... .-+.
T Consensus 3 ~M~iiI~G~G~--vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~------------~~~~i~Gd~~~~~~L~~Agi~~ 68 (461)
T 4g65_A 3 AMKIIILGAGQ--VGGTLAENLVGENNDITIVDKDGDRLRELQDKY------------DLRVVNGHASHPDVLHEAGAQD 68 (461)
T ss_dssp CEEEEEECCSH--HHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS------------SCEEEESCTTCHHHHHHHTTTT
T ss_pred cCEEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc------------CcEEEEEcCCCHHHHHhcCCCc
Confidence 47888888864 4455566553 2368999999999887765432 46788999876311 2256
Q ss_pred ccEEEEcc
Q 028002 144 YDAIHVGA 151 (215)
Q Consensus 144 ~D~V~~~~ 151 (215)
.|++++..
T Consensus 69 ad~~ia~t 76 (461)
T 4g65_A 69 ADMLVAVT 76 (461)
T ss_dssp CSEEEECC
T ss_pred CCEEEEEc
Confidence 88887654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 215 | ||||
| d1i1na_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 5e-56 | |
| d1r18a_ | 223 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 2e-50 | |
| d1jg1a_ | 215 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 9e-42 | |
| d1vbfa_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 5e-34 | |
| d1dl5a1 | 213 | c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methylt | 1e-32 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 6e-24 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 1e-20 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 1e-16 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 3e-13 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 3e-12 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 3e-09 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 6e-09 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 3e-08 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 4e-07 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 4e-07 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 7e-07 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 2e-06 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 8e-06 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 8e-05 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 1e-04 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 1e-04 | |
| d2nxca1 | 254 | c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT | 3e-04 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 4e-04 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 4e-04 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.001 | |
| d1im8a_ | 225 | c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) | 0.001 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 0.002 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 0.003 |
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 175 bits (444), Expect = 5e-56
Identities = 112/217 (51%), Positives = 145/217 (66%), Gaps = 5/217 (2%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ ATISAPHMHA L+
Sbjct: 11 LIHNLRKNGIIKTDKVFEVMLATDRSHYAKC--NPYMDSPQSIGFQATISAPHMHAYALE 68
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV S+ N+ K
Sbjct: 69 LLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTL 128
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--NIF 178
L G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG
Sbjct: 129 -LSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGN 187
Query: 179 QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 188 QMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRW 224
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 161 bits (408), Expect = 2e-50
Identities = 96/212 (45%), Positives = 130/212 (61%), Gaps = 10/212 (4%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
++ L+ +GVI S V++ M+ DR + P PY+D+P IG TISAPHMHA L+
Sbjct: 15 LIRQLKDHGVIASDAVAQAMKETDRKHYSPRN--PYMDAPQPIGGGVTISAPHMHAFALE 72
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-----RAVGVEHIPELVVSSIQNIEK 115
L ++LKPG LD+GSG+GYLTACF + +G R VG+EH ELV S N+
Sbjct: 73 YLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNT 132
Query: 116 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 175
+ L G L + GDGRKG+P APY+AIHVGAAAP+ P LI+QL GGR+++PVG
Sbjct: 133 DDRSML-DSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVG 191
Query: 176 --NIFQDLKVVDKNQDGSLSIWSETSVRYVPL 205
Q ++ DK+ +G + + V YVPL
Sbjct: 192 PDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 223
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 215 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 138 bits (349), Expect = 9e-42
Identities = 84/219 (38%), Positives = 124/219 (56%), Gaps = 19/219 (8%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATC 58
VE L+ G+I SK+V R V D ++D P+ I T+SAPHM A
Sbjct: 11 TVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIM 70
Query: 59 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
L++ NLKPGM+ L++G+G+G+ A + +V +E IPELV + +N+E+
Sbjct: 71 LEI--ANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLER--- 123
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--N 176
++ V +GDG KG+P APYD I V A AP+IP+ LI+QLK GG+++IPVG +
Sbjct: 124 ---AGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYH 180
Query: 177 IFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215
++Q+L V K +DG + I + V +VPL GW
Sbjct: 181 LWQELLEVRKTKDG-IKIKNHGGVAFVPLIGEY----GW 214
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Score = 119 bits (298), Expect = 5e-34
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 19/208 (9%)
Query: 11 ITSKKVSEVMETIDRACFVPDGTPP--YVDSPMAIGYNATISAPHMHATCLQLLEENLKP 68
I +++++E +DR+ F+P+ Y + A+ I+ ++ L E +L
Sbjct: 11 IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELDLHK 70
Query: 69 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 128
G L+IG+G GY TA A +V + V VE ++ A+ L ++
Sbjct: 71 GQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMY--------NYASKLLSYYNNIK 119
Query: 129 VHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG-NIFQDLKVVDKN 187
+ +GDG G+ E PYD + V A AP + +QLK GG M++P+G Q L V K
Sbjct: 120 LILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKVIKK 179
Query: 188 QDGSLSIWSETSVRYVPLTSRDAQLRGW 215
+ S+ + V + + G+
Sbjct: 180 GNS-PSLENLGEVMFGRIGGLY----GF 202
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Score = 115 bits (288), Expect = 1e-32
Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 19/217 (8%)
Query: 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPP---YVDSPMAI----GYNATISAPH 53
+ L+ YGV S +++ I R F+ P Y D + +T S P
Sbjct: 5 LFWILKKYGV--SDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPS 62
Query: 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 113
+ A ++ + + GM L+IG GTGY A + +VG +G V VE+ ++ + +N+
Sbjct: 63 LMALFMEWVGLD--KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV 120
Query: 114 EKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173
E+ ++ GDG G PEF+PYD I V E+P+ QLK GGR+++P
Sbjct: 121 ERLGIENVIF------VCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP 174
Query: 174 VGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSR 208
+ + + K +D L + R++
Sbjct: 175 INLKLSRRQPAFLFKKKDPYLVGNYKLETRFITAGGN 211
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.9 bits (235), Expect = 6e-24
Identities = 37/180 (20%), Positives = 67/180 (37%), Gaps = 14/180 (7%)
Query: 34 PPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ 93
P D + + I+ P L ++ ++ PG L+ GSG+G ++ + VG Q
Sbjct: 66 PALEDYVVLMKRGTAITFPKDINMILSMM--DINPGDTVLEAGSGSGGMSLFLSKAVGSQ 123
Query: 94 GRAVGVEHIPELVVSSIQNIEKSAAAPLLKE-----GSLSVHVGDGRKG--WPEFAPYDA 146
GR + E + + +N + + L ++ D + +DA
Sbjct: 124 GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDA 183
Query: 147 IHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQDLKVVD---KNQDGSLSIW-SETSVR 201
+ + P LK GG + V NI Q ++++D + SE VR
Sbjct: 184 VALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKISEVIVR 243
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 84.7 bits (209), Expect = 1e-20
Identities = 42/205 (20%), Positives = 73/205 (35%), Gaps = 17/205 (8%)
Query: 7 HYGVITSKKV------SEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQ 60
H G I V S V + V D M++ + P A +
Sbjct: 33 HRGSIAHDAVIGLEQGSVVKSSNGALFLVLRPLLV--DYVMSMPRGPQVIYPKDAAQIVH 90
Query: 61 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
++ PG L+ G+G+G LT VGP G+ + E + + +N+ P
Sbjct: 91 EG--DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 148
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQ 179
+ + V D D + AP E+ A+ L GG +++ V + Q
Sbjct: 149 P---DNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQ 205
Query: 180 DLKVVD--KNQDGSLSIWS-ETSVR 201
++V+ + + + ET R
Sbjct: 206 LSRIVEALRAKQCWTEPRAWETLQR 230
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 74.0 bits (181), Expect = 1e-16
Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 7/152 (4%)
Query: 34 PPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ 93
P +D M + I P + +L ++K G +D G G+G + A A VG
Sbjct: 71 PSLIDEIMNMKRRTQIVYPKDSSFIAMML--DVKEGDRIIDTGVGSGAMCAVLARAVGSS 128
Query: 94 GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153
G+ E E + +S +++ V D +G+ E
Sbjct: 129 GKVFAYEKREEFA-----KLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDP 183
Query: 154 PEIPQALIDQLKPGGRMVIPVGNIFQDLKVVD 185
+ LK GGR Q + +
Sbjct: 184 WNYIDKCWEALKGGGRFATVCPTTNQVQETLK 215
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 64.3 bits (156), Expect = 3e-13
Identities = 33/197 (16%), Positives = 68/197 (34%), Gaps = 11/197 (5%)
Query: 7 HYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENL 66
H G+ + + + ++ V D +P Y + I + + + L
Sbjct: 28 HLGISRVIEPGDELIVSGKSFIVSDFSPMYFGRVIRRN--TQIISEIDASYIIMRC--GL 83
Query: 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 126
+PGM L++G G+G +++ + +G VE + + ++ N+ + G+
Sbjct: 84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE-----FYDIGN 138
Query: 127 LSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDK 186
+ D + I Q + +KPG + N Q K V
Sbjct: 139 VRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLS 198
Query: 187 -NQDGSLSIWS-ETSVR 201
+ G + + E R
Sbjct: 199 LSASGMHHLETVELMKR 215
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 61.0 bits (147), Expect = 3e-12
Identities = 28/148 (18%), Positives = 61/148 (41%), Gaps = 13/148 (8%)
Query: 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124
A+D+G GTG +T A V ++ PE + ++ N+++
Sbjct: 30 EPGKNDVAVDVGCGTGGVTLELAGRVRR---VYAIDRNPEAISTTEMNLQRHGLGD---- 82
Query: 125 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGNIFQDL 181
++++ GD + + D VG + E+ + + D+LKPGGR+++ +
Sbjct: 83 -NVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKF 141
Query: 182 KVVD--KNQDGSLSIWSETSVRYVPLTS 207
+ ++ ++ ++I R L
Sbjct: 142 EAMECLRDLGFDVNITELNIARGRALDR 169
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 53.1 bits (126), Expect = 3e-09
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 4/121 (3%)
Query: 52 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111
+AT ++L +KPG LD+GSG+G + +A G G++ + +
Sbjct: 19 EEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHGI--TGTGIDMSSLFTAQAKR 74
Query: 112 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMV 171
E+ + + + A A + + L LKPGG M+
Sbjct: 75 RAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML 134
Query: 172 I 172
I
Sbjct: 135 I 135
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.8 bits (126), Expect = 6e-09
Identities = 23/165 (13%), Positives = 50/165 (30%), Gaps = 15/165 (9%)
Query: 52 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111
P+ + Q LK G +D+GSG G AL G + G E + + +I
Sbjct: 202 PNFLSDVYQQC--QLKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTIL 258
Query: 112 NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA---------IHVGAAAPEIPQA--- 159
E+ L L+ +K + + ++ ++ +
Sbjct: 259 QYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEK 318
Query: 160 LIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVP 204
++ K G +++ ++ N + +
Sbjct: 319 ILQTAKVGCKIISLKSLRSLTYQINFYNVENIFNRLKVQRYDLKE 363
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 50.0 bits (118), Expect = 3e-08
Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 3/120 (2%)
Query: 53 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112
H H+ L + + LDIG+G G+ F+ V +GV+ E+V +
Sbjct: 1 HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSF 57
Query: 113 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 172
++ + + + + + A H + + + + LK GR ++
Sbjct: 58 AQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLL 117
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 46.9 bits (110), Expect = 4e-07
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 4/114 (3%)
Query: 60 QLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 118
+L++ LK LD+ +G G++ FA V + V + +++ + IE +
Sbjct: 6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGH 62
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 172
+ + + + + A H LK GG++++
Sbjct: 63 QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLL 116
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (111), Expect = 4e-07
Identities = 27/168 (16%), Positives = 49/168 (29%), Gaps = 26/168 (15%)
Query: 60 QLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE---K 115
Q+++E + +D+GSG G + A GVE + K
Sbjct: 142 QMIDEIKMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRK 200
Query: 116 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ-------LKPGG 168
K ++ GD + + + Q +K GG
Sbjct: 201 WMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGG 260
Query: 169 RMVIP--------------VGNIFQDLKVVDKNQDGSLSIWSETSVRY 202
R+V + +I ++VV+ + W+ V Y
Sbjct: 261 RIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSPLKGSVSWTGKPVSY 308
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 46.4 bits (109), Expect = 7e-07
Identities = 16/117 (13%), Positives = 40/117 (34%), Gaps = 2/117 (1%)
Query: 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124
+ +H +D G G GYL ++ + G++ L+ + + E
Sbjct: 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLE 83
Query: 125 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQDL 181
G + + + + + Q +I +K GG+++ + ++
Sbjct: 84 GDATEIELNDKYDIAICH--AFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNM 138
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 44.3 bits (104), Expect = 2e-06
Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 2/134 (1%)
Query: 54 MHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112
+ A + L+ +KPG L +G +G + + +VG +G+ G+E P ++ +
Sbjct: 58 LGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPI 117
Query: 113 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 172
+E+ + + + D A I A LK GG +I
Sbjct: 118 VEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAE-VYLKRGGYGMI 176
Query: 173 PVGNIFQDLKVVDK 186
V + D+ +
Sbjct: 177 AVKSRSIDVTKEPE 190
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 8e-06
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 14/126 (11%)
Query: 65 NLKPGMHALDIGSGTGYLT-----ACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 119
+ K + L IG G G + A G VE E + + + K +
Sbjct: 37 DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL 96
Query: 120 PLLKEGSLSVHVGDGRKGWPEFAP---YDAIHVGAAAPEIP------QALIDQLKPGGRM 170
+K + + E +D IH+ + + L +M
Sbjct: 97 ENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKM 156
Query: 171 VIPVGN 176
+I V +
Sbjct: 157 LIIVVS 162
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 40.1 bits (92), Expect = 8e-05
Identities = 25/137 (18%), Positives = 43/137 (31%), Gaps = 8/137 (5%)
Query: 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPEL 105
T H LEE LK LD+G GTG + + V V+ E+
Sbjct: 20 YETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLF---LQERGFEVVLVDPSKEM 76
Query: 106 VVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLK 165
+ + + K+ ++ A D + + + L
Sbjct: 77 LEVAREKGVKNVVEAKAED-----LPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLV 131
Query: 166 PGGRMVIPVGNIFQDLK 182
P G ++ V N + L+
Sbjct: 132 PDGLLIATVDNFYTFLQ 148
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 39.9 bits (92), Expect = 1e-04
Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 8/124 (6%)
Query: 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 113
MH ++ +PG + L++GS G T+ VE E + + +
Sbjct: 7 MHPFMVRAFTPFFRPG-NLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRL 62
Query: 114 EKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173
+ + + + H+ + + D L GGR+ +
Sbjct: 63 KDGITYIHSRFEDAQLPRRYD----NIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV 118
Query: 174 VGNI 177
N
Sbjct: 119 CPNA 122
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 39.9 bits (92), Expect = 1e-04
Identities = 35/155 (22%), Positives = 53/155 (34%), Gaps = 19/155 (12%)
Query: 34 PPYVDSPMAIGYNATISAPH---MHATCLQLLEENL-KPGMHALDIGSGTGYLTACFALM 89
P + M A + A H + + L E L LDIG G GY T FA
Sbjct: 46 DPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFA-- 103
Query: 90 VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 149
+ +PE+ + + + A + ++ V + DAI
Sbjct: 104 ----------DALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR 153
Query: 150 GAAAPEIPQALIDQLKPGGRM--VIPVGNIFQDLK 182
AP + L +KPGG + P +LK
Sbjct: 154 -IYAPCKAEELARVVKPGGWVITATPGPRHLMELK 187
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Score = 38.3 bits (88), Expect = 3e-04
Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 11/153 (7%)
Query: 23 IDRACFVPDGTPPYVDS---PMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGT 79
+ + G L+ L +L+PG LD+G+G+
Sbjct: 72 APPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGS 131
Query: 80 GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP 139
G L G+A+GV+ P ++ + N +++ P EGS + +
Sbjct: 132 GVLAIAAEK---LGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGS-----LEAALPFG 183
Query: 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 172
F A + + L PGGR ++
Sbjct: 184 PFDLLVANLYAELHAALAPRYREALVPGGRALL 216
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 38.0 bits (87), Expect = 4e-04
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 9/86 (10%)
Query: 60 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE-KSAA 118
L+ K G LD+G G G + G+ + ++ + + + A
Sbjct: 16 CLIRLYTKRGDSVLDLGCGKGGDLLKYE--------RAGIGEYYGVDIAEVSINDARVRA 67
Query: 119 APLLKEGSLSVHVGDGRKGWPEFAPY 144
+ + + D +
Sbjct: 68 RNMKRRFKVFFRAQDSYGRHMDLGKE 93
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 37.8 bits (86), Expect = 4e-04
Identities = 15/120 (12%), Positives = 26/120 (21%), Gaps = 12/120 (10%)
Query: 65 NLKPGMHALDIGSGTGYLTACFA----LMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120
N+ PG L G + + +VG + VE +
Sbjct: 17 NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKV 76
Query: 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMVI 172
G + A + AA Q L + ++
Sbjct: 77 YAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL 136
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 36.6 bits (83), Expect = 0.001
Identities = 21/143 (14%), Positives = 42/143 (29%), Gaps = 1/143 (0%)
Query: 45 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE 104
A + ++ EN LD+ GTG LT AV +
Sbjct: 14 IRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEML 72
Query: 105 LVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQL 164
+ + ++ S + I + +A+ + L
Sbjct: 73 SEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHL 132
Query: 165 KPGGRMVIPVGNIFQDLKVVDKN 187
K GG + + + ++ +V+ N
Sbjct: 133 KEGGVFIFDINSYYKLSQVLGNN 155
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Score = 36.3 bits (82), Expect = 0.001
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 52 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPE 104
++ L E + + D+G G T + P + +G+++
Sbjct: 23 SNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQP 76
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 35.8 bits (82), Expect = 0.002
Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 16/126 (12%)
Query: 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 115
A L+ L+ L +G+ +G + A +V +G VE+ + ++ +
Sbjct: 44 AMILKGHRLKLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVR- 101
Query: 116 SAAAPLLKEGSLSVHVGDGRK-GWPEFAPYDAIHVGAAAPEIPQALI------DQLKPGG 168
+ ++ + D K + + Q I LK G
Sbjct: 102 -------ERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKG 154
Query: 169 RMVIPV 174
+VI V
Sbjct: 155 EVVIMV 160
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.3 bits (80), Expect = 0.003
Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 20/128 (15%)
Query: 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAV-GVEHIPELVVSSIQNIEKSAAAPLLK 123
LD+ GTG + +G +V V+ +++ +++ P
Sbjct: 53 RQHGCHRVLDVACGTGVDSIMLV----EEGFSVTSVDASDKMLKYALKERWNRRKEPAFD 108
Query: 124 EGSLSVHVGDGRKGWPEFA--PYDAIHVGAAAPEIPQALIDQ-------------LKPGG 168
+ + I +G + +P + DQ ++PGG
Sbjct: 109 KWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGG 168
Query: 169 RMVIPVGN 176
+VI N
Sbjct: 169 LLVIDHRN 176
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 215 | |||
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 100.0 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 100.0 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 100.0 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 100.0 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.97 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.83 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.82 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.81 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.8 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.79 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.79 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.79 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.78 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.77 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.77 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.76 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.72 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.71 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.71 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.71 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.7 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.7 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.69 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.69 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.68 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.68 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.67 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.67 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.66 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.65 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.65 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.65 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.63 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.6 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.59 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.59 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.58 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.57 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.57 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.56 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.55 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.55 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.52 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.51 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.51 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.51 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.49 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.48 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.47 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.47 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.45 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.45 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.45 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.45 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.45 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.44 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.44 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.44 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.42 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.39 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.39 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.39 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.39 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.38 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.37 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.36 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.35 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.35 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.25 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.23 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.18 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 99.18 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.13 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 99.09 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 99.07 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 99.04 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.03 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.95 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.94 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.94 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.9 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.9 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.9 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.88 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.87 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.86 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.86 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.83 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.79 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.77 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.73 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.73 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.6 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.58 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.56 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.52 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.5 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.45 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 98.41 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 98.4 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.37 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 98.32 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 98.28 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 98.23 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 98.14 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 98.13 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 98.11 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.05 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 98.03 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 98.0 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.98 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.93 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 97.93 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.85 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.83 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 97.77 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.74 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.71 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.64 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.55 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 97.46 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.42 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.35 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 97.33 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 97.28 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 97.26 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.22 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.15 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.11 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.8 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.72 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.38 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.21 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.0 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 95.84 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.62 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 95.58 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.45 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 95.36 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.11 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.9 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.85 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.62 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.48 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.02 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 93.41 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 93.26 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 92.56 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 91.3 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 90.75 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 90.4 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 90.18 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 90.02 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 89.77 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 89.69 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 89.34 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 88.83 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 88.76 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 87.52 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 87.29 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 87.13 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 87.06 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 86.86 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 86.59 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 86.39 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 86.3 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 86.24 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 86.11 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 85.9 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 85.84 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 85.5 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.31 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 84.99 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 84.38 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 84.25 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 84.11 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 83.6 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 83.48 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 83.46 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 83.32 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 83.14 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 82.77 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 82.53 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 82.39 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 81.78 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 81.71 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 81.21 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 80.96 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 80.7 |
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.1e-39 Score=245.87 Aligned_cols=212 Identities=53% Similarity=0.882 Sum_probs=192.2
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCCCCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCcc
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTG 80 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G 80 (215)
|||+|++.|+++++++.++|+.+||+.|+|+ .+|.|.+++++.++++++|.+.+.+++.|...++++.+|||+|||+|
T Consensus 11 mv~~l~~~g~i~~~~v~~a~~~vpRe~Fvp~--~aY~D~~l~i~~~~~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsG 88 (224)
T d1i1na_ 11 LIHNLRKNGIIKTDKVFEVMLATDRSHYAKC--NPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSG 88 (224)
T ss_dssp HHHHHHHTTSCCSHHHHHHHHTSCGGGTCSS--CTTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTS
T ss_pred HHHHHHHcCCCCCHHHHHHHHhCCHHHcCCc--ccCCCCCccccchhhhhhhHHHHHHHHHHhhccCCCCeEEEecCCCC
Confidence 7999999999999999999999999999996 58999999999999999999999999999655899999999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchHHH
Q 028002 81 YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQAL 160 (215)
Q Consensus 81 ~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~~~ 160 (215)
+.+..+++..++.++|+++|.++.+++.|++++...+.. .....++.+..+|....++..++||+|++....+++++.+
T Consensus 89 y~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~-~~~~~~~~~~~gD~~~~~~~~~~fD~I~~~~~~~~ip~~l 167 (224)
T d1i1na_ 89 ILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT-LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQAL 167 (224)
T ss_dssp HHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTH-HHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCHHH
T ss_pred HHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcc-cccccceEEEEeecccccchhhhhhhhhhhcchhhcCHHH
Confidence 999999999888889999999999999999998765432 1234688999999988777768999999999999999999
Q ss_pred HHhcCCCcEEEEEeCCC--ceeEEEEEEcCCCceEEEeeceEEEeecccCccccCCC
Q 028002 161 IDQLKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 215 (215)
Q Consensus 161 ~~~Lk~gG~lv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 215 (215)
.+.|||||+|+++++.. .+.+..+.+..++.|.....++++|+|++..+++...|
T Consensus 168 ~~~LkpGG~LV~pv~~~~~~q~l~~~~k~~~~~~~~~~l~~v~fvPl~~~~~~~~~~ 224 (224)
T d1i1na_ 168 IDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRW 224 (224)
T ss_dssp HHTEEEEEEEEEEESCTTSCEEEEEEEECTTSCEEEEEEEEECCCBCCCHHHHCCCC
T ss_pred HhhcCCCcEEEEEEccCCCcEEEEEEEEeCCCeEEEEEEeeEEEECCCCchhhccCC
Confidence 99999999999998653 56778888888889999999999999999999999988
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=3.2e-36 Score=230.06 Aligned_cols=202 Identities=47% Similarity=0.817 Sum_probs=179.3
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCCCCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCcc
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTG 80 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G 80 (215)
|||+|++.|++++++|.++|+++||+.|+|+. +|.|.+++++.++++++|.+.+.+++.|...++++.+|||+|||+|
T Consensus 15 lv~~l~~~gvi~~~~v~~a~~~vpRe~Fvp~~--aY~D~~lpi~~~~~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsG 92 (223)
T d1r18a_ 15 LIRQLKDHGVIASDAVAQAMKETDRKHYSPRN--PYMDAPQPIGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSG 92 (223)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHTSCGGGTCSSC--TTBSSCEEEETTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTS
T ss_pred HHHHHHHcCCCCCHHHHHHHHhCCHHHcCCcc--ccCCCCccccCCceeehhhhHHHHHHHHhhccCCCCeEEEecCCCC
Confidence 79999999999999999999999999999974 9999999999999999999999999998545889999999999999
Q ss_pred HHHHHHHHHhCCC-----CeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC
Q 028002 81 YLTACFALMVGPQ-----GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE 155 (215)
Q Consensus 81 ~~~~~l~~~~~~~-----~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~ 155 (215)
+.+..+++.+++. .+|+++|.++.+++.+++++...... .....++.+..+|....++..++||+|++.+..++
T Consensus 93 Y~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~-~~~~~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~ 171 (223)
T d1r18a_ 93 YLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS-MLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPD 171 (223)
T ss_dssp HHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH-HHHHTSEEEEESCGGGCCGGGCSEEEEEECSCBSS
T ss_pred HHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh-hcCccEEEEEecccccccccccceeeEEEEeechh
Confidence 9999999887543 38999999999999999987654221 01236899999999988887789999999999999
Q ss_pred chHHHHHhcCCCcEEEEEeCC--CceeEEEEEEcCCCceEEEeeceEEEeec
Q 028002 156 IPQALIDQLKPGGRMVIPVGN--IFQDLKVVDKNQDGSLSIWSETSVRYVPL 205 (215)
Q Consensus 156 ~~~~~~~~Lk~gG~lv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 205 (215)
+++.+.+.||+||+|++++.. ..+.+..+.+..++.|.....+.++|+|+
T Consensus 172 ~p~~l~~~Lk~gG~lV~pvg~~~~~q~l~~i~k~~~g~~~~~~l~~v~FvPL 223 (223)
T d1r18a_ 172 TPTELINQLASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 223 (223)
T ss_dssp CCHHHHHTEEEEEEEEEEESCSSSCEEEEEEEECTTSCEEEEEEEEECCCCC
T ss_pred chHHHHHhcCCCcEEEEEEecCCCcEEEEEEEEeCCCcEEEEEEeeEEeecC
Confidence 999999999999999999864 45778889998889999999999999996
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=9.7e-36 Score=225.72 Aligned_cols=197 Identities=40% Similarity=0.651 Sum_probs=179.5
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC--CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCC
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSG 78 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G 78 (215)
|||+|++.|++++++|.+||+++||+.|+|+. ..+|.|.+++++.++++++|.+.+.+++.+. ++++.+|||+|||
T Consensus 11 lv~~L~~~g~i~~~~v~~A~~~VpRe~Fvp~~~~~~AY~D~~l~i~~g~~is~P~~~a~ml~~L~--l~~g~~VLeIGsG 88 (215)
T d1jg1a_ 11 TVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIMLEIAN--LKPGMNILEVGTG 88 (215)
T ss_dssp HHHHHHHTTSCCSHHHHHHHHHSCGGGGSCGGGGGGTTSSSCEECSTTCEECCHHHHHHHHHHHT--CCTTCCEEEECCT
T ss_pred HHHHHHHcCCCCCHHHHHHHHcCCchhcCCHHHhhcccccCCcccchhhhhhhhhhHHHHHHhhc--cCccceEEEecCC
Confidence 68999999999999999999999999999988 7889999999999999999999999999998 9999999999999
Q ss_pred ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchH
Q 028002 79 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQ 158 (215)
Q Consensus 79 ~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~ 158 (215)
+|+.+..+++..+ ++|+++|.++.+++.+++++...+. .++.++.+|....++..++||+|++.+..+++++
T Consensus 89 sGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~------~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~~ip~ 160 (215)
T d1jg1a_ 89 SGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGV------KNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPE 160 (215)
T ss_dssp TSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEEEECSBBSSCCH
T ss_pred CChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCC------ceeEEEECccccCCcccCcceeEEeecccccCCH
Confidence 9999999998874 6799999999999999999998765 6999999999988887789999999999999999
Q ss_pred HHHHhcCCCcEEEEEeCCC--ceeEEEEEEcCCCceEEEeeceEEEeecccC
Q 028002 159 ALIDQLKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPLTSR 208 (215)
Q Consensus 159 ~~~~~Lk~gG~lv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 208 (215)
.+.+.|+|||+|++++... .+.+..+++. ++.|.....++++|+|+...
T Consensus 161 ~l~~qL~~gGrLv~pv~~~~~~q~l~~~~k~-~~~~~~~~l~~v~fvPl~g~ 211 (215)
T d1jg1a_ 161 PLIEQLKIGGKLIIPVGSYHLWQELLEVRKT-KDGIKIKNHGGVAFVPLIGE 211 (215)
T ss_dssp HHHHTEEEEEEEEEEECSSSSCEEEEEEEEE-TTEEEEEEEEEECCCBCBST
T ss_pred HHHHhcCCCCEEEEEEccCCccEEEEEEEEE-CCEEEEEEEccEEEEcCCCc
Confidence 9999999999999998654 3555556554 66698899999999999754
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-32 Score=209.62 Aligned_cols=197 Identities=30% Similarity=0.473 Sum_probs=168.2
Q ss_pred ChhhhhhcCCCCCHHHHHHHHhCcCcCCCCCC---CCCCcCCCccc----cCCcccchhHHHHHHHHHHHhcCCCCCEEE
Q 028002 1 MVEHLQHYGVITSKKVSEVMETIDRACFVPDG---TPPYVDSPMAI----GYNATISAPHMHATCLQLLEENLKPGMHAL 73 (215)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~y~~~~~~~----~~~~~~~~~~~~~~~l~~l~~~~~~~~~vL 73 (215)
|++.|++.|+ +++|.+||..+||+.|+|+. +..|.|.++.. ....++++|.+.+.+++.+. ++++++||
T Consensus 5 l~~~l~~~gi--~~~v~~a~~~v~Re~Fv~~~~~~~~~~~d~~~~~~~~~~~~~~i~~P~~~a~~l~~l~--l~~g~~VL 80 (213)
T d1dl5a1 5 LFWILKKYGV--SDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKGMRVL 80 (213)
T ss_dssp HHHHHHHTTC--CHHHHHHHHHSCGGGGCSSCCCHHHHTSSSCEEEEECSSCEEEECCHHHHHHHHHHTT--CCTTCEEE
T ss_pred HHHHHHHcCC--CHHHHHHHHcCCHHHcCCchhhhhhhccCcccCcccCCccceeeccchhhHHHHHhhh--ccccceEE
Confidence 5788999995 56999999999999999886 23566766543 34457889999999999997 99999999
Q ss_pred EEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCC
Q 028002 74 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 74 diG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
|+|||+|+.+..+++.+++.++|+++|+++.+++.|++++...+. .++.++.+|..+.++..++||+|++....
T Consensus 81 diG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~------~n~~~~~~d~~~~~~~~~~fD~I~~~~~~ 154 (213)
T d1dl5a1 81 EIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------ENVIFVCGDGYYGVPEFSPYDVIFVTVGV 154 (213)
T ss_dssp EECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred EecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc------cccccccCchHHccccccchhhhhhhccH
Confidence 999999999999999988888999999999999999999988665 68999999988877766789999999999
Q ss_pred CCchHHHHHhcCCCcEEEEEeCCC---ceeEEEEEEcCCCceEEEeeceEEEeecccC
Q 028002 154 PEIPQALIDQLKPGGRMVIPVGNI---FQDLKVVDKNQDGSLSIWSETSVRYVPLTSR 208 (215)
Q Consensus 154 ~~~~~~~~~~Lk~gG~lv~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 208 (215)
+++++.+.+.|||||+|+++.+.. .+....+++ .++.+..+...+++|+|+...
T Consensus 155 ~~~p~~l~~~LkpGG~lv~pv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Fvpl~g~ 211 (213)
T d1dl5a1 155 DEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKK-KDPYLVGNYKLETRFITAGGN 211 (213)
T ss_dssp SCCCHHHHHHEEEEEEEEEEBCBGGGTBCEEEEEEE-ETTEEEEEEEEECCCCBCCGG
T ss_pred HHhHHHHHHhcCCCcEEEEEECccCCcEEEEEEEEE-eCCeEEEEEEeeEEEEECCCC
Confidence 999999999999999999988643 234444444 467888889999999998764
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.97 E-value=2.4e-31 Score=202.58 Aligned_cols=183 Identities=29% Similarity=0.438 Sum_probs=161.2
Q ss_pred CCCHHHHHHHHhCcCcCCCCCC--CCCCcCC--CccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHH
Q 028002 11 ITSKKVSEVMETIDRACFVPDG--TPPYVDS--PMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACF 86 (215)
Q Consensus 11 ~~~~~~~~~~~~~~r~~~~~~~--~~~y~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l 86 (215)
|+++++.+||.++||+.|+|+. ..+|.|. +++++.+.++++|...+.+++.+. ++++++|||+|||+|+.+..+
T Consensus 11 I~~~~v~~A~~~VpRe~Fvp~~~~~~AY~d~~~~l~i~~g~~~~~p~~~a~ml~~L~--l~~g~~VLdIG~GsGy~ta~L 88 (224)
T d1vbfa_ 11 IKTQELAEAFNKVDRSLFLPENLKDYAYAHTHEALPILPGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALI 88 (224)
T ss_dssp CCCHHHHHHHHHSCHHHHSCGGGGGGSSSSTTCCEEEETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHH
T ss_pred CCCHHHHHHHHcCcHHHcCChhhhhcCccCcccCcccCCCCceehhhhHHHHHHHhh--hcccceEEEecCCCCHHHHHH
Confidence 6999999999999999999987 4567654 588888999999999999999997 999999999999999999999
Q ss_pred HHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCCchHHHHHhcCC
Q 028002 87 ALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 166 (215)
Q Consensus 87 ~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~ 166 (215)
++.. ++|+++|.++..++.|++++... .++.++.+|....++..++||+|++.+..+++++.+.+.|||
T Consensus 89 a~l~---~~V~aiE~~~~~~~~A~~~~~~~--------~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~ip~~l~~qLk~ 157 (224)
T d1vbfa_ 89 AEIV---DKVVSVEINEKMYNYASKLLSYY--------NNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKE 157 (224)
T ss_dssp HHHS---SEEEEEESCHHHHHHHHHHHTTC--------SSEEEEESCGGGCCGGGCCEEEEEESSBBSSCCHHHHHTEEE
T ss_pred HHHh---cccccccccHHHHHHHHHHHhcc--------cccccccCchhhcchhhhhHHHHHhhcchhhhhHHHHHhcCC
Confidence 9885 78999999999999999876542 689999999988777768899999999999999999999999
Q ss_pred CcEEEEEeCCC-ceeEEEEEEcCCCceEEEeeceEEEeeccc
Q 028002 167 GGRMVIPVGNI-FQDLKVVDKNQDGSLSIWSETSVRYVPLTS 207 (215)
Q Consensus 167 gG~lv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 207 (215)
||+|+++++.. .+.+..+.+. ++.+..+..++++|.|+..
T Consensus 158 GGrLV~pvg~~~~q~l~~i~k~-~~~~~~~~l~~v~F~pl~g 198 (224)
T d1vbfa_ 158 GGIMILPIGVGRVQKLYKVIKK-GNSPSLENLGEVMFGRIGG 198 (224)
T ss_dssp EEEEEEEECSSSSEEEEEEECC-TTSCEEEEEEEECCCBCCS
T ss_pred CCEEEEEEcCCCceEEEEEEEE-CCceEEEEeeeEEEEECCC
Confidence 99999998764 4667777775 5668888899999999876
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.83 E-value=3.4e-21 Score=148.28 Aligned_cols=134 Identities=20% Similarity=0.259 Sum_probs=99.1
Q ss_pred CCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhc
Q 028002 38 DSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 117 (215)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~ 117 (215)
+....+..+..+.+|...+.++..+. ++||++|||+|||+|.++..+++.+++.++|+++|.++.+++.|++++..++
T Consensus 57 ~~~~~~~r~~qiiypkD~~~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~ 134 (250)
T d1yb2a1 57 YFGRVIRRNTQIISEIDASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY 134 (250)
T ss_dssp GHHHHC------------------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS
T ss_pred HHHhhCCCCCcccCHHHHHHHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc
Confidence 33344555667778887888888887 9999999999999999999999998888999999999999999999998765
Q ss_pred ccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC-CchHHHHHhcCCCcEEEEEeCCCce
Q 028002 118 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQ 179 (215)
Q Consensus 118 ~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~-~~~~~~~~~Lk~gG~lv~~~~~~~~ 179 (215)
.. .++++..+|+.+..++ +.||.|+++.+.+ .+++.+.+.|||||+|++.+|+..|
T Consensus 135 ~~-----~nv~~~~~Di~~~~~~-~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Q 191 (250)
T d1yb2a1 135 DI-----GNVRTSRSDIADFISD-QMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQ 191 (250)
T ss_dssp CC-----TTEEEECSCTTTCCCS-CCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEESSHHH
T ss_pred CC-----CceEEEEeeeeccccc-ceeeeeeecCCchHHHHHHHHHhcCCCceEEEEeCCcCh
Confidence 43 7999999999887655 7899999876554 4678999999999999998887544
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=7.5e-20 Score=141.62 Aligned_cols=133 Identities=21% Similarity=0.289 Sum_probs=113.5
Q ss_pred cccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCc
Q 028002 42 AIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL 121 (215)
Q Consensus 42 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 121 (215)
.+.....+.+|...+.++..+. ++|+++|||+|||+|+++..+++.+++.++|+++|.++++++.|++++.....
T Consensus 72 ~~~r~tqiiypkD~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~--- 146 (264)
T d1i9ga_ 72 SMPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG--- 146 (264)
T ss_dssp TSCSCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT---
T ss_pred hccCCccccchHHHHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc---
Confidence 4555677888999999999998 99999999999999999999999999999999999999999999999887532
Q ss_pred ccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC-CchHHHHHhcCCCcEEEEEeCCCce
Q 028002 122 LKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQ 179 (215)
Q Consensus 122 ~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~-~~~~~~~~~Lk~gG~lv~~~~~~~~ 179 (215)
....++.+.++|..+...+++.||.|+++.+-+ ..++.+.++|||||++++.+|+..|
T Consensus 147 ~~~~nv~~~~~d~~~~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Q 205 (264)
T d1i9ga_ 147 QPPDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVATVTQ 205 (264)
T ss_dssp SCCTTEEEECSCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEESSHHH
T ss_pred CCCceEEEEecccccccccCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEeCccCh
Confidence 122689999999887655558999999876654 4668899999999999998888643
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.81 E-value=9e-20 Score=139.65 Aligned_cols=109 Identities=20% Similarity=0.268 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
....+++.+. ++++.+|||+|||+|..+..+++.+ .+++|+|+|+.+++.|++++...+. +++.++++|
T Consensus 4 ~~~~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~------~~~~~~~~d 72 (234)
T d1xxla_ 4 SLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGV------ENVRFQQGT 72 (234)
T ss_dssp HHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTC------CSEEEEECB
T ss_pred HHHHHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccc------ccccccccc
Confidence 3556677776 9999999999999999999999874 6899999999999999999888664 589999999
Q ss_pred CCCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEE
Q 028002 134 GRKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIP 173 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~ 173 (215)
+.+...+.++||+|++...++++ ++++.++|||||++++.
T Consensus 73 ~~~~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~ 118 (234)
T d1xxla_ 73 AESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLV 118 (234)
T ss_dssp TTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEE
Confidence 98866566899999999988765 46789999999999885
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.80 E-value=2e-19 Score=137.17 Aligned_cols=109 Identities=20% Similarity=0.257 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
+.++++.+. ++++.+|||||||+|..+..+++.. .+|+|+|+|+.+++.|++++...+. +++++.++|.
T Consensus 4 ~~~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~------~~i~~~~~d~ 72 (231)
T d1vl5a_ 4 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDA 72 (231)
T ss_dssp HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC
T ss_pred HHHHHHhcC--CCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhccccccc------cccccccccc
Confidence 567788876 8999999999999999999999874 6899999999999999999887654 6899999999
Q ss_pred CCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEe
Q 028002 135 RKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~ 174 (215)
.+.....++||+|++...++++ ++++.++|||||++++..
T Consensus 73 ~~l~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 73 EQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp -CCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 8865555899999999988765 367899999999999853
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=8.2e-20 Score=142.04 Aligned_cols=130 Identities=24% Similarity=0.350 Sum_probs=111.1
Q ss_pred ccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccC
Q 028002 41 MAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 120 (215)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~ 120 (215)
..+..+..+.+|...+.++..+. ++|+++|||+|||+|.++..+++.+++.++|+++|.++.+++.|++++...+..
T Consensus 78 ~~~~r~~qiiypkd~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~- 154 (266)
T d1o54a_ 78 MNMKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI- 154 (266)
T ss_dssp HTCCC-CCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG-
T ss_pred hhccCCccccchHHHHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc-
Confidence 34555677888998999999998 999999999999999999999999888899999999999999999999987764
Q ss_pred cccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC-CchHHHHHhcCCCcEEEEEeCCCc
Q 028002 121 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 121 ~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~-~~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
.++.+...|....... ..||.|+.+.+-+ .+++.+.++|||||+|++.+|+..
T Consensus 155 ----~~v~~~~~d~~~~~~~-~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~ 208 (266)
T d1o54a_ 155 ----ERVTIKVRDISEGFDE-KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTN 208 (266)
T ss_dssp ----GGEEEECCCGGGCCSC-CSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEESSHH
T ss_pred ----cCcEEEeccccccccc-cceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEeCccc
Confidence 6888888887665544 6799998876654 477999999999999999888743
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.79 E-value=2.7e-19 Score=132.38 Aligned_cols=117 Identities=26% Similarity=0.381 Sum_probs=100.2
Q ss_pred cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE
Q 028002 49 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 49 ~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
+++.++...++..+. ++++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|+++++.+++. ++++
T Consensus 16 ~t~~eir~~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~~gl~-----~~v~ 85 (186)
T d1l3ia_ 16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLG-----DNVT 85 (186)
T ss_dssp CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCC-----TTEE
T ss_pred CChHHHHHHHHHhcC--CCCCCEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHHcCCC-----cceE
Confidence 466677788888886 8999999999999999999998763 68999999999999999999998765 6899
Q ss_pred EEeCCCCCCCCCCCCccEEEEccCCCC---chHHHHHhcCCCcEEEEEeC
Q 028002 129 VHVGDGRKGWPEFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 129 ~~~~d~~~~~~~~~~~D~V~~~~~~~~---~~~~~~~~Lk~gG~lv~~~~ 175 (215)
++++|+.+.......||.|+++....+ +.+.+.+.|||||++++...
T Consensus 86 ~~~gda~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 86 LMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp EEESCHHHHHTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEECchhhcccccCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEee
Confidence 999998776655578999999987765 44677899999999998754
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=5.3e-19 Score=136.23 Aligned_cols=114 Identities=24% Similarity=0.285 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE
Q 028002 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 130 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~ 130 (215)
.+.....+.+.+. +.|+.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.|+++....+.. ++++++
T Consensus 18 ~~~~~~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl~-----~~v~~~ 88 (245)
T d1nkva_ 18 TEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVS-----ERVHFI 88 (245)
T ss_dssp CHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEE
T ss_pred CHHHHHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHHhhcc-----ccchhh
Confidence 4445666777765 89999999999999999999988753 68999999999999999998887765 679999
Q ss_pred eCCCCCCCCCCCCccEEEEccCCCCc------hHHHHHhcCCCcEEEEEe
Q 028002 131 VGDGRKGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 131 ~~d~~~~~~~~~~~D~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~ 174 (215)
.+|+.+..++ ++||+|++...+.++ ++++.++|||||++++..
T Consensus 89 ~~d~~~~~~~-~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 89 HNDAAGYVAN-EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp ESCCTTCCCS-SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred hhHHhhcccc-CceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence 9999886544 899999998876554 367899999999999964
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=9.8e-20 Score=140.62 Aligned_cols=148 Identities=22% Similarity=0.383 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHh------CcCcCCCCCCC-------CCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcC
Q 028002 11 ITSKKVSEVMET------IDRACFVPDGT-------PPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGS 77 (215)
Q Consensus 11 ~~~~~~~~~~~~------~~r~~~~~~~~-------~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~ 77 (215)
+.+++|.+..+. +.+-...|+|. ....+..++||.|.|.++ ..+++.+....+++.+|||+||
T Consensus 54 i~~~dW~~~w~~~~~p~~~~~~~v~~~~~~~~~~~~~i~i~pg~aFGTG~H~TT----~l~l~~l~~~~~~g~~VLDiGc 129 (254)
T d2nxca1 54 VGDEDWLEAWRRDLKPALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETT----RLALKALARHLRPGDKVLDLGT 129 (254)
T ss_dssp CCHHHHHHHHHHHCCCEEETTEEEECTTCCCCSSSEEEECCCC-----CCSHHH----HHHHHHHHHHCCTTCEEEEETC
T ss_pred cCcchHHHHHHhhCCCEEECCEEEEeccccCCCcceEEEEccccccCccccchh----hHHHHHHHhhcCccCEEEEccc
Confidence 577788766544 12222334442 122244667899988874 4455555555788999999999
Q ss_pred CccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC---
Q 028002 78 GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP--- 154 (215)
Q Consensus 78 G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~--- 154 (215)
|+|.++..+++. | .+|+|+|+|+.+++.|++++..++. +..+..++.....+. ++||+|+++...+
T Consensus 130 GsG~l~i~aa~~-g--~~V~gvDis~~av~~A~~na~~n~~-------~~~~~~~d~~~~~~~-~~fD~V~ani~~~~l~ 198 (254)
T d2nxca1 130 GSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGV-------RPRFLEGSLEAALPF-GPFDLLVANLYAELHA 198 (254)
T ss_dssp TTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTC-------CCEEEESCHHHHGGG-CCEEEEEEECCHHHHH
T ss_pred chhHHHHHHHhc-C--CEEEEEECChHHHHHHHHHHHHcCC-------ceeEEeccccccccc-cccchhhhccccccHH
Confidence 999999988876 4 6899999999999999999988764 457788887654433 7899999875443
Q ss_pred CchHHHHHhcCCCcEEEEE
Q 028002 155 EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 155 ~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+.+.+.++|||||+|+++
T Consensus 199 ~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 199 ALAPRYREALVPGGRALLT 217 (254)
T ss_dssp HHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEE
Confidence 3456788999999999986
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.77 E-value=2e-18 Score=130.83 Aligned_cols=110 Identities=20% Similarity=0.237 Sum_probs=90.6
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+...+...++++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.|++++...+ .++.++.+|+.+
T Consensus 26 ~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~---~~v~giD~S~~~i~~ak~~~~~~~-------~~~~~~~~d~~~ 95 (226)
T d1ve3a1 26 TLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE-------SNVEFIVGDARK 95 (226)
T ss_dssp HHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT-------CCCEEEECCTTS
T ss_pred HHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhh---cccccccccccchhhhhhhhcccc-------cccccccccccc
Confidence 3344444457888999999999999999999863 689999999999999999887654 367888899888
Q ss_pred CCCCCCCccEEEEccCCCCch--------HHHHHhcCCCcEEEEEeCC
Q 028002 137 GWPEFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~~~ 176 (215)
.....++||+|++..+++++. +++.++|||||++++.+++
T Consensus 96 l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 96 LSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 666668999999999887653 4688999999999998765
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.3e-18 Score=138.54 Aligned_cols=141 Identities=21% Similarity=0.238 Sum_probs=112.8
Q ss_pred CcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh
Q 028002 36 YVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 115 (215)
Q Consensus 36 y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 115 (215)
+.+....+..+..+.+|...+.++..+. +.||++|||+|||+|+++..+++.++++++|+++|+++.+++.|++++..
T Consensus 68 ~~d~~~~~~r~tqiiypkD~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~ 145 (324)
T d2b25a1 68 LEDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 145 (324)
T ss_dssp HHHHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCCcccccccHHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHH
Confidence 3344445666778889999999999998 99999999999999999999999999989999999999999999999987
Q ss_pred hcccC-----cccCCCeEEEeCCCCCCCC--CCCCccEEEEccCCC-CchHHHHHhcCCCcEEEEEeCCCc
Q 028002 116 SAAAP-----LLKEGSLSVHVGDGRKGWP--EFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 116 ~~~~~-----~~~~~~v~~~~~d~~~~~~--~~~~~D~V~~~~~~~-~~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
.+... ....+++++..+|+..... ....||.|+.+.+.+ ..++.+.++|||||+|++.+|+..
T Consensus 146 ~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~P~i~ 216 (324)
T d2b25a1 146 WRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNIT 216 (324)
T ss_dssp HHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEESSHH
T ss_pred hhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEeCCHH
Confidence 54320 0123689999999876433 236799999876554 477899999999999999888653
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.76 E-value=3.4e-18 Score=134.30 Aligned_cols=102 Identities=24% Similarity=0.193 Sum_probs=89.4
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+.++.+|||+|||+|..+..+++..+ .+|+|+|+|+.+++.|+++....++. +++++..+|+.+...+.++||
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~i~~a~~~~~~~gl~-----~~v~~~~~d~~~l~~~~~sfD 137 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLA-----DNITVKYGSFLEIPCEDNSYD 137 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCT-----TTEEEEECCTTSCSSCTTCEE
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEeccchhhhhhhccccccccc-----ccccccccccccccccccccc
Confidence 67899999999999999999998764 68999999999999999999887765 689999999988765668999
Q ss_pred EEEEccCCCCch------HHHHHhcCCCcEEEEEe
Q 028002 146 AIHVGAAAPEIP------QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~~------~~~~~~Lk~gG~lv~~~ 174 (215)
+|++...++++. +++.++|||||+|++..
T Consensus 138 ~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 138 FIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEE
Confidence 999998876654 67899999999999864
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.72 E-value=2.2e-17 Score=127.56 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=87.4
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCC
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAP 143 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~ 143 (215)
...++.+|||+|||+|..+..+++. +. .+|+|+|+|+.+++.|++++...+.. .++.+.++|+..... ..++
T Consensus 21 ~~~~~~~VLDlGCG~G~~~~~~~~~-~~-~~v~GiD~S~~~l~~A~~r~~~~~~~-----~~v~f~~~D~~~~~~~~~~~ 93 (252)
T d1ri5a_ 21 YTKRGDSVLDLGCGKGGDLLKYERA-GI-GEYYGVDIAEVSINDARVRARNMKRR-----FKVFFRAQDSYGRHMDLGKE 93 (252)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHH-TC-SEEEEEESCHHHHHHHHHHHHTSCCS-----SEEEEEESCTTTSCCCCSSC
T ss_pred hCCCcCEEEEecccCcHHHHHHHHc-CC-CeEEEecCCHHHHHHHHHHHHhcCCC-----cceEEEEcchhhhccccccc
Confidence 4778899999999999999999887 33 68999999999999999988765432 578999999865443 3468
Q ss_pred ccEEEEccCCCCch----------HHHHHhcCCCcEEEEEeCCC
Q 028002 144 YDAIHVGAAAPEIP----------QALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 144 ~D~V~~~~~~~~~~----------~~~~~~Lk~gG~lv~~~~~~ 177 (215)
||+|++...+++++ +++.++|||||++++++++.
T Consensus 94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~ 137 (252)
T d1ri5a_ 94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137 (252)
T ss_dssp EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence 99999999887653 46789999999999988764
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.71 E-value=2.2e-17 Score=127.04 Aligned_cols=111 Identities=17% Similarity=0.133 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
....+++.+.....++.+|||+|||+|.++..+++.. .+++|+|.|+.|++.|++++...+ .+++++++|
T Consensus 23 ~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~~~-------~~v~~~~~d 92 (246)
T d1y8ca_ 23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQG-------LKPRLACQD 92 (246)
T ss_dssp HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTT-------CCCEEECCC
T ss_pred HHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccccC-------ccceeeccc
Confidence 3445555554334556899999999999999999874 689999999999999999887654 378999999
Q ss_pred CCCCCCCCCCccEEEEcc-CCCC---------chHHHHHhcCCCcEEEEEeC
Q 028002 134 GRKGWPEFAPYDAIHVGA-AAPE---------IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~-~~~~---------~~~~~~~~Lk~gG~lv~~~~ 175 (215)
+.+.... ++||+|+|.. .+.+ +++.+.++|+|||.|++.+.
T Consensus 93 ~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 93 ISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GGGCCCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhhhccc-ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 9876544 7899999863 3322 34678999999999998654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.71 E-value=6.4e-17 Score=122.81 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
+...+...+..+.+++.+|||+|||+|..+..+++... +..+|+|+|+|+.|++.|++++...... .++.+..+
T Consensus 25 ~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~-----~~~~~~~~ 99 (225)
T d1im8a_ 25 IITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-----IPVEILCN 99 (225)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCS-----SCEEEECS
T ss_pred HHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhccc-----chhhhccc
Confidence 34444445555678899999999999999999998652 4579999999999999999998765543 57788888
Q ss_pred CCCCCCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028002 133 DGRKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 133 d~~~~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
|..+... +.+|+|++...++++ ++++.+.|||||.+++..
T Consensus 100 d~~~~~~--~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 100 DIRHVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp CTTTCCC--CSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcccc--ccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence 8766433 678999988776543 467899999999999864
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.71 E-value=3.9e-17 Score=125.75 Aligned_cols=100 Identities=19% Similarity=0.176 Sum_probs=83.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+..+|||+|||+|..+..+++.. .+|+|+|+|+.|++.|++++...+ .++++.++|+.+...+ ++||
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~~---~~v~gvD~s~~mi~~a~~~~~~~~-------~~i~~~~~d~~~l~~~-~~fD 107 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKERN-------LKIEFLQGDVLEIAFK-NEFD 107 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT-------CCCEEEESCGGGCCCC-SCEE
T ss_pred CCCCCEEEEeCCCCCccchhhcccc---eEEEEEeecccccccccccccccc-------ccchheehhhhhcccc-cccc
Confidence 4556799999999999999999873 689999999999999999987654 3789999999886655 6899
Q ss_pred EEEEcc-CCCC--------chHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGA-AAPE--------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~-~~~~--------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++.. .+.+ +++++.++|||||++++.+++
T Consensus 108 ~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 999874 3332 345789999999999997655
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.70 E-value=8.2e-17 Score=119.60 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+++.+. ..++.+|||+|||+|.++..+++.. .+++++|+|+.+++.+++++..++.. ..++.+..+|..
T Consensus 42 ~lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~----~~~i~~~~~d~~ 112 (194)
T d1dusa_ 42 KILVENVV--VDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLD----NYDIRVVHSDLY 112 (194)
T ss_dssp HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCT----TSCEEEEECSTT
T ss_pred HHHHHhCC--cCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCc----cceEEEEEcchh
Confidence 44566655 6778999999999999999998864 68999999999999999999876643 246899999988
Q ss_pred CCCCCCCCccEEEEccCCCC-------chHHHHHhcCCCcEEEEEeCC
Q 028002 136 KGWPEFAPYDAIHVGAAAPE-------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 136 ~~~~~~~~~D~V~~~~~~~~-------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+...+ +.||+|+++.+++. +++.+.++|+|||.+++.+..
T Consensus 113 ~~~~~-~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 159 (194)
T d1dusa_ 113 ENVKD-RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp TTCTT-SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred hhhcc-CCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence 75444 79999999988754 335678999999999886644
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.70 E-value=1.2e-16 Score=119.01 Aligned_cols=99 Identities=18% Similarity=0.153 Sum_probs=83.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+.+ .+|||+|||+|..+..++++. .+|+++|+|+.+++.++++....+. +++.+...|.....++ ++||
T Consensus 29 ~~~-grvLDiGcG~G~~~~~la~~g---~~v~gvD~s~~~l~~a~~~~~~~~~------~~~~~~~~d~~~~~~~-~~fD 97 (198)
T d2i6ga1 29 VAP-GRTLDLGCGNGRNSLYLAANG---YDVTAWDKNPASMANLERIKAAEGL------DNLQTDLVDLNTLTFD-GEYD 97 (198)
T ss_dssp SCS-CEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEECCTTTCCCC-CCEE
T ss_pred CCC-CcEEEECCCCCHHHHHHHHHh---hhhccccCcHHHHHHHHHHhhhccc------cchhhhheeccccccc-cccc
Confidence 444 599999999999999999984 6899999999999999998887655 5789999998876665 7899
Q ss_pred EEEEccCCCCc--------hHHHHHhcCCCcEEEEEeC
Q 028002 146 AIHVGAAAPEI--------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 146 ~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~~ 175 (215)
+|++...++++ ++++.++|+|||++++...
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 98 FILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp EEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999887654 3567889999999998653
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.69 E-value=2e-16 Score=124.23 Aligned_cols=109 Identities=19% Similarity=0.201 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
....+++.+. +++|.+|||||||.|.++..+++..| .+++|+++|+..++.+++++...++. ..+.+...|
T Consensus 49 k~~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~-----~~v~~~~~d 119 (291)
T d1kpia_ 49 KRKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSP-----RRKEVRIQG 119 (291)
T ss_dssp HHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCS-----SCEEEEECC
T ss_pred HHHHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccc-----hhhhhhhhc
Confidence 4556666665 89999999999999999999998875 79999999999999999999887765 678888887
Q ss_pred CCCCCCCCCCccEEEEccCCCCc---------------hHHHHHhcCCCcEEEEEe
Q 028002 134 GRKGWPEFAPYDAIHVGAAAPEI---------------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~~~---------------~~~~~~~Lk~gG~lv~~~ 174 (215)
... ..++||.|++...++|+ ++.+.++|||||++++.+
T Consensus 120 ~~~---~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 120 WEE---FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp GGG---CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ccc---cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 643 23789999999988764 457899999999999853
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1e-16 Score=124.84 Aligned_cols=99 Identities=22% Similarity=0.265 Sum_probs=85.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|..+..+++.+ ++.+++|+|+|+.+++.|+++. .++.+.++|+.+.....++||
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~-----------~~~~~~~~d~~~l~~~~~sfD 149 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY-----------PQVTFCVASSHRLPFSDTSMD 149 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTSCSBCTTCEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc-----------ccccceeeehhhccCCCCCEE
Confidence 4567899999999999999999884 6689999999999999988652 578999999988766668999
Q ss_pred EEEEccCCCCchHHHHHhcCCCcEEEEEeCCC
Q 028002 146 AIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+|++....++ ++++.++|||||.|++++++.
T Consensus 150 ~v~~~~~~~~-~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 150 AIIRIYAPCK-AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp EEEEESCCCC-HHHHHHHEEEEEEEEEEEECT
T ss_pred EEeecCCHHH-HHHHHHHhCCCcEEEEEeeCC
Confidence 9999887765 578999999999999998753
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.68 E-value=2.3e-16 Score=123.43 Aligned_cols=109 Identities=22% Similarity=0.184 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
....+++.+. ++++.+|||||||+|.++..+++..| .+|+|+|+|+..++.|++++...++. ..+.+...|
T Consensus 40 k~~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~-----~~~~~~~~d 110 (280)
T d2fk8a1 40 KVDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTN-----RSRQVLLQG 110 (280)
T ss_dssp HHHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCS-----SCEEEEESC
T ss_pred HHHHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccc-----cchhhhhhh
Confidence 3455555554 78999999999999999999998865 68999999999999999999887764 567777777
Q ss_pred CCCCCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028002 134 GRKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
.... .++||.|++...++++ ++.+.++|||||++++..
T Consensus 111 ~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 111 WEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp GGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 6543 2689999999988765 357899999999999853
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=1.8e-16 Score=123.13 Aligned_cols=137 Identities=18% Similarity=0.249 Sum_probs=105.7
Q ss_pred CCCCcCCCccccCCcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 028002 33 TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 33 ~~~y~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 112 (215)
...|....+..+.+..++.|+....+...+......+.+|||+|||+|..++.++... ++.+++++|+|+.+++.|++|
T Consensus 73 ~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~N 151 (274)
T d2b3ta1 73 VREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRN 151 (274)
T ss_dssp EEEETTEEEECCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHH
T ss_pred cEEEeeeEEEEeccccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHH
Confidence 3445555677788888888873333323333334556789999999999999999985 678999999999999999999
Q ss_pred HHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCC-------------------------------CchHHHH
Q 028002 113 IEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-------------------------------EIPQALI 161 (215)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~-------------------------------~~~~~~~ 161 (215)
+..++. .+++++++|.....+. ++||+|+++++.- .+.+.+.
T Consensus 152 a~~~~~------~~v~~~~~d~~~~~~~-~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~ 224 (274)
T d2b3ta1 152 AQHLAI------KNIHILQSDWFSALAG-QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSR 224 (274)
T ss_dssp HHHHTC------CSEEEECCSTTGGGTT-CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHG
T ss_pred HHHhCc------ccceeeecccccccCC-CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHH
Confidence 988765 4799999998876554 6899999998751 0224566
Q ss_pred HhcCCCcEEEEEeCCC
Q 028002 162 DQLKPGGRMVIPVGNI 177 (215)
Q Consensus 162 ~~Lk~gG~lv~~~~~~ 177 (215)
++|+|||.+++.++..
T Consensus 225 ~~L~~~G~l~lEig~~ 240 (274)
T d2b3ta1 225 NALVSGGFLLLEHGWQ 240 (274)
T ss_dssp GGEEEEEEEEEECCSS
T ss_pred HhcCCCCEEEEEECch
Confidence 8899999999987653
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.67 E-value=1.4e-16 Score=124.97 Aligned_cols=103 Identities=18% Similarity=0.247 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
+.++.+|||+|||+|..+..+++..+...+|+|+|+|+.+++.|++++...+ .++++..+|+...... ++||
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~-------~~~~f~~~d~~~~~~~-~~fD 96 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-------YDSEFLEGDATEIELN-DKYD 96 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS-------SEEEEEESCTTTCCCS-SCEE
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc-------cccccccccccccccc-CCce
Confidence 5567899999999999999999876555789999999999999999887643 3688999998875444 6899
Q ss_pred EEEEccCCCCc------hHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~~------~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|++...++++ ++++.+.|||||.+++..++
T Consensus 97 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 97 IAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp EEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 99999988765 36789999999999997765
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=1e-16 Score=122.67 Aligned_cols=100 Identities=21% Similarity=0.160 Sum_probs=79.0
Q ss_pred HHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC
Q 028002 62 LEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 141 (215)
Q Consensus 62 l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (215)
+..+..++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.|+++. ...++.+++.+.....
T Consensus 36 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~l~~a~~~~------------~~~~~~~~~~~l~~~~ 100 (246)
T d2avna1 36 LEEYLKNPCRVLDLGGGTGKWSLFLQERG---FEVVLVDPSKEMLEVAREKG------------VKNVVEAKAEDLPFPS 100 (246)
T ss_dssp HHHHCCSCCEEEEETCTTCHHHHHHHTTT---CEEEEEESCHHHHHHHHHHT------------CSCEEECCTTSCCSCT
T ss_pred HHHhcCCCCEEEEECCCCchhcccccccc---eEEEEeeccccccccccccc------------cccccccccccccccc
Confidence 34456778899999999999999999873 68999999999999998752 1235677887765555
Q ss_pred CCccEEEEcc-CCCC------chHHHHHhcCCCcEEEEEeCC
Q 028002 142 APYDAIHVGA-AAPE------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 142 ~~~D~V~~~~-~~~~------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
++||+|++.. .+++ +++++.++|||||.+++++++
T Consensus 101 ~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 101 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 8999999865 4433 346788999999999998764
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=5.5e-16 Score=121.35 Aligned_cols=108 Identities=22% Similarity=0.139 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
....+++.+. +++|.+|||||||.|..+..+++..| .+|+|+++|+..++.|++++...+.. +++++..+|
T Consensus 50 k~~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g~~-----~~v~~~~~d 120 (285)
T d1kpga_ 50 KIDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENL-----RSKRVLLAG 120 (285)
T ss_dssp HHHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCC-----SCEEEEESC
T ss_pred HHHHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhhhh-----hhhHHHHhh
Confidence 3455555655 89999999999999999999998875 79999999999999999998887765 789999998
Q ss_pred CCCCCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEE
Q 028002 134 GRKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIP 173 (215)
Q Consensus 134 ~~~~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~ 173 (215)
.... +++||.|++...++++ ++++.++|||||++++.
T Consensus 121 ~~~~---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 121 WEQF---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp GGGC---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred hhcc---cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence 7654 2689999999887664 36788999999999973
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.1e-16 Score=121.19 Aligned_cols=102 Identities=20% Similarity=0.198 Sum_probs=85.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|..+..+++.. . .+|+|+|+|+.+++.|++++...+. .++++.++|+.+.....++||
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~~vD~s~~~l~~ak~~~~~~~~------~~~~f~~~d~~~~~~~~~~fD 129 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPL-F-REVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCCGLQDFTPEPDSYD 129 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTT-C-SEEEEEESCHHHHHHHHHHTGGGGG------GEEEEEECCGGGCCCCSSCEE
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhc-C-CEEEEeecCHHHhhccccccccccc------ccccccccccccccccccccc
Confidence 4556899999999999999887653 2 6899999999999999998876554 478999999988666568999
Q ss_pred EEEEccCCCCch--------HHHHHhcCCCcEEEEEeC
Q 028002 146 AIHVGAAAPEIP--------QALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 146 ~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~~ 175 (215)
+|++...++++. +++.+.|||||.+++..+
T Consensus 130 ~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~ 167 (222)
T d2ex4a1 130 VIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN 167 (222)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence 999999887753 467899999999999643
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.65 E-value=1.6e-16 Score=117.60 Aligned_cols=115 Identities=16% Similarity=0.085 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccC------cccCCCeE
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP------LLKEGSLS 128 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~------~~~~~~v~ 128 (215)
...++..+. +.++.+|||+|||+|..+..++++ | .+|+|+|+|+.+++.|+++.+...... ........
T Consensus 9 ~~~~~~~l~--~~~~~rvLd~GCG~G~~a~~la~~-G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T d1pjza_ 9 LQQYWSSLN--VVPGARVLVPLCGKSQDMSWLSGQ-G--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE 83 (201)
T ss_dssp HHHHHHHHC--CCTTCEEEETTTCCSHHHHHHHHH-C--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred HHHHHHHcC--CCCCCEEEEecCcCCHHHHHHHHc-C--CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence 445567776 889999999999999999999998 4 799999999999999999886533210 01124567
Q ss_pred EEeCCCCCCCC-CCCCccEEEEccCCCCch--------HHHHHhcCCCcEEEEEe
Q 028002 129 VHVGDGRKGWP-EFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 129 ~~~~d~~~~~~-~~~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~ 174 (215)
+..+|.....+ ....||+|++...++++. +.+.++|||||.+++..
T Consensus 84 ~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 84 IWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp EEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred eecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 78888766543 225799999988876654 46789999999988754
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.65 E-value=1.9e-16 Score=120.27 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+++.+.... ++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++.. .++.++.++..+
T Consensus 10 ~~~~~~~~~~-~~~~VLDiGcG~G~~~~~l~~~g---~~v~giD~s~~~i~~a~~~~~----------~~~~~~~~~~~~ 75 (225)
T d2p7ia1 10 FMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLK----------DGITYIHSRFED 75 (225)
T ss_dssp HHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSC----------SCEEEEESCGGG
T ss_pred HHHHHhhhhC-CCCcEEEEeCCCcHHHHHHHHcC---CeEEEEeCcHHHhhhhhcccc----------cccccccccccc
Confidence 3344444333 45689999999999999998773 579999999999999987632 478999999877
Q ss_pred CCCCCCCccEEEEccCCCCch------HHHH-HhcCCCcEEEEEeCCC
Q 028002 137 GWPEFAPYDAIHVGAAAPEIP------QALI-DQLKPGGRMVIPVGNI 177 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~------~~~~-~~Lk~gG~lv~~~~~~ 177 (215)
..++ ++||+|++...++++. .++. ++|+|||.+++.+|+.
T Consensus 76 ~~~~-~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~ 122 (225)
T d2p7ia1 76 AQLP-RRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 122 (225)
T ss_dssp CCCS-SCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred cccc-cccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCc
Confidence 6554 7999999999987754 3555 6899999999998763
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.63 E-value=6.3e-16 Score=119.40 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=85.9
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+++.+. ..++.+|||+|||+|..+..++.... ..|+++|+++.+++.|++++... .++++.++++.+
T Consensus 84 ~fl~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~--------~~~~~~~~d~~~ 151 (254)
T d1xtpa_ 84 NFIASLP--GHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM--------PVGKFILASMET 151 (254)
T ss_dssp HHHHTST--TCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS--------SEEEEEESCGGG
T ss_pred HHHhhCC--CCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhcccccc--------ccceeEEccccc
Confidence 3444443 45678999999999999998886643 58999999999999999876432 468899999887
Q ss_pred CCCCCCCccEEEEccCCCCch--------HHHHHhcCCCcEEEEEeC
Q 028002 137 GWPEFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~~ 175 (215)
..+..++||+|++...++++. +++.+.|+|||.+++..+
T Consensus 152 ~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 152 ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp CCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 766668999999999987763 467899999999999643
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.60 E-value=4.8e-15 Score=110.51 Aligned_cols=102 Identities=17% Similarity=0.270 Sum_probs=85.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCCcc
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D 145 (215)
+...|||||||+|..+..+|+. .|+..++|+|+++.++..+.+++...+. .|+.++.+|+.... ...+++|
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~-~p~~~~iGiD~~~~~i~~a~~~~~~~~l------~Nv~~~~~Da~~l~~~~~~~~~d 101 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQ-NPDINYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADTLTDVFEPGEVK 101 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHH-CTTSEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGGHHHHCCTTSCC
T ss_pred CCceEEEEEecCcHHHHHHHHh-CCCCcEEEeecchHHHHHHHHHHHHHhc------cCchhcccchhhhhcccCchhhh
Confidence 3458999999999999999998 5779999999999999999999888665 69999999987532 2347899
Q ss_pred EEEEccCCC--------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~--------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.|++..+.+ .+++.+.++|||||.|++.+..
T Consensus 102 ~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~ 146 (204)
T d2fcaa1 102 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 146 (204)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred ccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence 998887664 2557889999999999998754
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.59 E-value=6.4e-15 Score=110.34 Aligned_cols=101 Identities=21% Similarity=0.220 Sum_probs=80.3
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC---C
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE---F 141 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~ 141 (215)
.++|+++|||+|||+|..+..+++.. +.++|+|+|+++.+++.++++.+.. .++.++.+|....... .
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~--------~ni~~i~~d~~~~~~~~~~~ 123 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRER--------NNIIPLLFDASKPWKYSGIV 123 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHC--------SSEEEECSCTTCGGGTTTTC
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhcc--------CCceEEEeeccCcccccccc
Confidence 47999999999999999999999987 4579999999999999999887653 5899999988753221 2
Q ss_pred CCccEEEEccCCCC----chHHHHHhcCCCcEEEEEe
Q 028002 142 APYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 142 ~~~D~V~~~~~~~~----~~~~~~~~Lk~gG~lv~~~ 174 (215)
..+|+|+.+..... ++.++.+.|||||.+++..
T Consensus 124 ~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 124 EKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence 35666666544333 4467889999999999864
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=3.6e-15 Score=113.32 Aligned_cols=119 Identities=17% Similarity=0.063 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc-----------
Q 028002 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA----------- 119 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~----------- 119 (215)
.|.+...+.+.+. ..++.+|||+|||+|..+..+++. | .+|+|+|+|+.+++.++++.......
T Consensus 30 ~~~l~~~~~~~l~--~~~~~rvLd~GCG~G~~a~~LA~~-G--~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~ 104 (229)
T d2bzga1 30 HQLLKKHLDTFLK--GKSGLRVFFPLCGKAVEMKWFADR-G--HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKV 104 (229)
T ss_dssp CHHHHHHHHHHHT--TCCSCEEEETTCTTCTHHHHHHHT-T--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEE
T ss_pred CHHHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHHhC-C--CcEEEEeCCHHHHHHHHHHhhccccccchhcccccce
Confidence 3444455545554 678899999999999999999998 4 68999999999999998876532210
Q ss_pred CcccCCCeEEEeCCCCCCC-CCCCCccEEEEccCCCCch--------HHHHHhcCCCcEEEEEe
Q 028002 120 PLLKEGSLSVHVGDGRKGW-PEFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPV 174 (215)
Q Consensus 120 ~~~~~~~v~~~~~d~~~~~-~~~~~~D~V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~~ 174 (215)
......++++.++|..... ...+.||+|+....++++. +.+.++|||||.+++.+
T Consensus 105 ~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 105 FKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV 168 (229)
T ss_dssp EEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence 0012257899999987643 3347899999998887653 57899999999987765
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=6.5e-15 Score=111.44 Aligned_cols=102 Identities=25% Similarity=0.374 Sum_probs=83.5
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC---CCCC
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WPEF 141 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~ 141 (215)
.++||++|||+|||+|..+..+++..|+.++|+++|+++.+++.+++++... .++..+..|.... ....
T Consensus 70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~--------~~~~~i~~d~~~~~~~~~~~ 141 (227)
T d1g8aa_ 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--------RNIVPILGDATKPEEYRALV 141 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--------TTEEEEECCTTCGGGGTTTC
T ss_pred ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc--------CCceEEEEECCCcccccccc
Confidence 3789999999999999999999999999899999999999999998876542 4677888776542 1223
Q ss_pred CCccEEEEccCCCC----chHHHHHhcCCCcEEEEEe
Q 028002 142 APYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 142 ~~~D~V~~~~~~~~----~~~~~~~~Lk~gG~lv~~~ 174 (215)
..+|+|+++..... +++++.+.|||||.+++++
T Consensus 142 ~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 142 PKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceEEEEEEccccchHHHHHHHHHHhcccCCeEEEEE
Confidence 67899988766543 4567889999999999865
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.57 E-value=4.4e-15 Score=110.99 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=75.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++..+ .+++|+|+|+.+++.+++ .++.+.++|+.+.....++||
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~~-------~~~~giD~s~~~~~~a~~-------------~~~~~~~~d~~~l~~~~~~fD 93 (208)
T d1vlma_ 34 LLPEGRGVEIGVGTGRFAVPL-------KIKIGVEPSERMAEIARK-------------RGVFVLKGTAENLPLKDESFD 93 (208)
T ss_dssp HCCSSCEEEETCTTSTTHHHH-------TCCEEEESCHHHHHHHHH-------------TTCEEEECBTTBCCSCTTCEE
T ss_pred hCCCCeEEEECCCCccccccc-------ceEEEEeCChhhcccccc-------------ccccccccccccccccccccc
Confidence 445678999999999876544 357899999999999875 367899999987766668999
Q ss_pred EEEEccCCCCch------HHHHHhcCCCcEEEEEeCCC
Q 028002 146 AIHVGAAAPEIP------QALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~~~~~~------~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+|++...++++. +++.++|+|||.+++..++.
T Consensus 94 ~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 94 FALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 131 (208)
T ss_dssp EEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ccccccccccccccccchhhhhhcCCCCceEEEEecCC
Confidence 999999887654 57899999999999987654
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.57 E-value=1.4e-14 Score=111.67 Aligned_cols=107 Identities=23% Similarity=0.273 Sum_probs=87.2
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.++..+. ..+..+|||+|||+|..+..++++. |..+++++|+ +.+++.+++++...+.. ++++++.+|+.+
T Consensus 71 ~~~~~~d--~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~-----~rv~~~~~D~~~ 141 (253)
T d1tw3a2 71 APAAAYD--WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLS-----DRVDVVEGDFFE 141 (253)
T ss_dssp HHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCT-----TTEEEEECCTTS
T ss_pred HHHhhcC--CccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcc-----cchhhccccchh
Confidence 4444444 5666899999999999999999985 6689999998 67899999998887654 689999999876
Q ss_pred CCCCCCCccEEEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028002 137 GWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
..+ .+||+|++...++++ ++++.+.|||||+|++..
T Consensus 142 ~~~--~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 142 PLP--RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp CCS--SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hcc--cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence 443 579999999888764 356889999999999853
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.56 E-value=5e-14 Score=104.88 Aligned_cols=102 Identities=15% Similarity=0.206 Sum_probs=85.4
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--CCCCCcc
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPYD 145 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~D 145 (215)
....|||||||+|..+..+|+.. |+..++|+|+++.++..|.+++...+. .|+.+..+|+.... .+.+++|
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l------~Ni~~~~~da~~l~~~~~~~~~~ 103 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSDLTDYFEDGEID 103 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSCGGGTSCTTCCS
T ss_pred CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhcc------ccceeeecCHHHHhhhccCCcee
Confidence 34589999999999999999994 779999999999999999999888765 69999999987532 2447899
Q ss_pred EEEEccCCC--------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~--------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.|++..+.+ .+++.+.++|||||.|.+.+..
T Consensus 104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~ 148 (204)
T d1yzha1 104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 148 (204)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred hhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence 998887654 2456789999999999998754
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=6.7e-15 Score=115.78 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...+...+. ..++.+|||+|||+|..+..+++. | .+|+|+|+|+.|++.|+++....+.... .....+...++
T Consensus 45 ~~~l~~~l~--~~~~~~vLD~GcG~G~~~~~la~~-g--~~v~gvD~S~~ml~~A~~~~~~~~~~~~--~~~~~~~~~~~ 117 (292)
T d1xvaa_ 45 KAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEE-G--FSVTSVDASDKMLKYALKERWNRRKEPA--FDKWVIEEANW 117 (292)
T ss_dssp HHHHHHHHH--HTTCCEEEESSCTTSHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTTTSHH--HHTCEEEECCG
T ss_pred HHHHHHHhh--hcCCCEEEEecCCCcHHHHHHHHc-C--CeeeeccCchHHHHHHHHHHHhcccccc--cceeeeeeccc
Confidence 345555565 456789999999999999999987 3 6899999999999999998766443211 12344555554
Q ss_pred CC---CCCCCCCccEEEEcc-CCCC-------------chHHHHHhcCCCcEEEEEeC
Q 028002 135 RK---GWPEFAPYDAIHVGA-AAPE-------------IPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 135 ~~---~~~~~~~~D~V~~~~-~~~~-------------~~~~~~~~Lk~gG~lv~~~~ 175 (215)
.. ..+..+.||.|++.. ++.+ +++++.++|||||+|++.+.
T Consensus 118 ~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 118 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp GGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 32 123337899998764 3333 45789999999999999764
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.55 E-value=1.9e-14 Score=109.14 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=77.9
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCC
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAP 143 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~ 143 (215)
+++|+++|||+|||+|..+..+++. ++.++|+|+|+|+.+++.++++.... .++.++.++...... ....
T Consensus 71 ~ikpG~~VLDlGcGsG~~~~~la~~-~~~g~V~aVDiS~~~i~~a~~~a~~~--------~ni~~i~~d~~~~~~~~~~~ 141 (230)
T d1g8sa_ 71 PIKRDSKILYLGASAGTTPSHVADI-ADKGIVYAIEYAPRIMRELLDACAER--------ENIIPILGDANKPQEYANIV 141 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHH-TTTSEEEEEESCHHHHHHHHHHTTTC--------TTEEEEECCTTCGGGGTTTC
T ss_pred CCCCCCEEEEeCEEcCHHHHHHHHh-CCCCEEEEEeCcHHHHHHHHHHHhhh--------cccceEEEeeccCccccccc
Confidence 3788999999999999999999998 57789999999999999998875432 578888888765432 2245
Q ss_pred ccEEEEccCCCC------chHHHHHhcCCCcEEEEEe
Q 028002 144 YDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 144 ~D~V~~~~~~~~------~~~~~~~~Lk~gG~lv~~~ 174 (215)
+|++++.....+ +..++.+.|||||.+++..
T Consensus 142 ~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEe
Confidence 666544444433 3467889999999999864
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.52 E-value=1.8e-14 Score=114.77 Aligned_cols=111 Identities=20% Similarity=0.285 Sum_probs=89.5
Q ss_pred HHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-
Q 028002 60 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW- 138 (215)
Q Consensus 60 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~- 138 (215)
..+....+++.+|||+|||+|..++.+++. |. .+|+++|+++.+++.+++++..++.. .+++++++|+.+..
T Consensus 137 ~~~~~~~~~g~~VLDl~~g~G~~si~~a~~-ga-~~V~~vD~s~~al~~a~~N~~~ngl~-----~~~~~~~~d~~~~~~ 209 (324)
T d2as0a2 137 LALEKWVQPGDRVLDVFTYTGGFAIHAAIA-GA-DEVIGIDKSPRAIETAKENAKLNGVE-----DRMKFIVGSAFEEME 209 (324)
T ss_dssp HHHGGGCCTTCEEEETTCTTTHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHHHHTTCG-----GGEEEEESCHHHHHH
T ss_pred HHHHhhcCCCCeeecccCcccchhhhhhhc-CC-cEEEeecCCHHHHHHHHHHHHHcCCC-----ccceeeechhhhhhH
Confidence 334444778999999999999999999876 44 68999999999999999999998865 57899999976532
Q ss_pred ---CCCCCccEEEEccCCC---------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 139 ---PEFAPYDAIHVGAAAP---------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 139 ---~~~~~~D~V~~~~~~~---------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
....+||+|+++++.. .+...+.++|+|||+|++++++.
T Consensus 210 ~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 210 KLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp HHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred HHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 1236899999998752 24456778999999999987764
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.4e-14 Score=110.09 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=75.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC--CCCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEFAP 143 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~ 143 (215)
..++.+|||||||+|..+..+++. ++ .+++++|+|+.+++.|++++.... .++.++..++... ....++
T Consensus 51 ~~~g~~VLdIGcG~G~~a~~~a~~-~~-~~v~~id~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 121 (229)
T d1zx0a1 51 SSKGGRVLEVGFGMAIAASKVQEA-PI-DEHWIIECNDGVFQRLRDWAPRQT-------HKVIPLKGLWEDVAPTLPDGH 121 (229)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTS-CE-EEEEEEECCHHHHHHHHHHGGGCS-------SEEEEEESCHHHHGGGSCTTC
T ss_pred ccCCCeEEEeeccchHHHHHHHHc-CC-CeEEEeCCCHHHHHHHHHHhhhcc-------ccccccccccccccccccccc
Confidence 467889999999999999999876 33 689999999999999999876543 4667777765431 223378
Q ss_pred ccEEEEccCC-----CC------chHHHHHhcCCCcEEEE
Q 028002 144 YDAIHVGAAA-----PE------IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 144 ~D~V~~~~~~-----~~------~~~~~~~~Lk~gG~lv~ 172 (215)
||.|+.+... .+ +.+++.++|||||+|++
T Consensus 122 fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 122 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred ccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence 9999876543 22 33568899999999987
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=1.5e-14 Score=104.94 Aligned_cols=120 Identities=18% Similarity=0.073 Sum_probs=86.2
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028002 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
.++...+.+.+...+.....++.+|||+|||+|.+++.++++ | .+++++|.|+.+++.+++++...+.. .
T Consensus 21 Rpt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~-g--a~vv~vD~~~~a~~~~~~N~~~~~~~-----~-- 90 (171)
T d1ws6a1 21 RPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE-G--WEAVLVEKDPEAVRLLKENVRRTGLG-----A-- 90 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT-T--CEEEEECCCHHHHHHHHHHHHHHTCC-----C--
T ss_pred CCCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhc-c--chhhhcccCHHHHhhhhHHHHhhccc-----c--
Confidence 344444455666677656778899999999999999998887 4 67999999999999999999987653 2
Q ss_pred EEEeCCCCCC----CCCCCCccEEEEccCCCC----chHHH--HHhcCCCcEEEEEeCCC
Q 028002 128 SVHVGDGRKG----WPEFAPYDAIHVGAAAPE----IPQAL--IDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 128 ~~~~~d~~~~----~~~~~~~D~V~~~~~~~~----~~~~~--~~~Lk~gG~lv~~~~~~ 177 (215)
.+...+.... .....+||+|++++++.. ....+ ..+|+|||++++..+..
T Consensus 91 ~v~~~~~d~~~~~~~~~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~~~~ 150 (171)
T d1ws6a1 91 RVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp EEECSCHHHHHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred ceeeeehhcccccccccCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEEecCC
Confidence 3444443221 112368999999987542 22333 34799999999876543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.51 E-value=6.4e-14 Score=108.09 Aligned_cols=100 Identities=22% Similarity=0.212 Sum_probs=86.2
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
...++.+|||+|||+|.+++.+++. +. .+|+++|+++.+++.+++++..+++. ++++++++|+.+.... +.|
T Consensus 104 ~~~~g~~VlD~~aG~G~~~l~~a~~-~~-~~V~avd~n~~a~~~~~~N~~~n~l~-----~~v~~~~~D~~~~~~~-~~~ 175 (260)
T d2frna1 104 VAKPDELVVDMFAGIGHLSLPIAVY-GK-AKVIAIEKDPYTFKFLVENIHLNKVE-----DRMSAYNMDNRDFPGE-NIA 175 (260)
T ss_dssp HCCTTCEEEETTCTTTTTHHHHHHH-TC-CEEEEECCCHHHHHHHHHHHHHTTCT-----TTEEEECSCTTTCCCC-SCE
T ss_pred hcCCccEEEECcceEcHHHHHHHHh-CC-cEEEEecCCHHHHHHHHHHHHHhCCC-----ceEEEEEcchHHhccC-CCC
Confidence 3678999999999999999999987 43 68999999999999999999998875 6799999999876554 789
Q ss_pred cEEEEccCC--CCchHHHHHhcCCCcEEEE
Q 028002 145 DAIHVGAAA--PEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 145 D~V~~~~~~--~~~~~~~~~~Lk~gG~lv~ 172 (215)
|.|+++.+. ..+++.+.+.|++||++.+
T Consensus 176 D~Ii~~~p~~~~~~l~~a~~~l~~gG~lh~ 205 (260)
T d2frna1 176 DRILMGYVVRTHEFIPKALSIAKDGAIIHY 205 (260)
T ss_dssp EEEEECCCSSGGGGHHHHHHHEEEEEEEEE
T ss_pred CEEEECCCCchHHHHHHHHhhcCCCCEEEE
Confidence 999987654 4566788999999999865
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.49 E-value=2.4e-14 Score=101.91 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=86.4
Q ss_pred HHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC
Q 028002 57 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 57 ~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~ 136 (215)
.+...|.. --++.+|||+|||+|.+++.++.+ |. .+|+++|.++.+++.+++++...+.. ++++++++|+..
T Consensus 4 ~~fn~l~~-~~~g~~vlDl~~GtG~~~iea~~r-ga-~~v~~ve~~~~a~~~~~~n~~~~~~~-----~~~~ii~~D~~~ 75 (152)
T d2esra1 4 AIFNMIGP-YFNGGRVLDLFAGSGGLAIEAVSR-GM-SAAVLVEKNRKAQAIIQDNIIMTKAE-----NRFTLLKMEAER 75 (152)
T ss_dssp HHHHHHCS-CCCSCEEEEETCTTCHHHHHHHHT-TC-CEEEEECCCHHHHHHHHHHHHTTTCG-----GGEEEECSCHHH
T ss_pred HHHHHHHh-hCCCCeEEEcCCccCHHHHHHHHh-Cc-ceeeeehhchhhhhhhhhhhhhcccc-----cchhhhcccccc
Confidence 34455542 235889999999999999988887 55 69999999999999999999887764 579999999865
Q ss_pred CCC-CCCCccEEEEccCCCC-----chHHHH--HhcCCCcEEEEEeCC
Q 028002 137 GWP-EFAPYDAIHVGAAAPE-----IPQALI--DQLKPGGRMVIPVGN 176 (215)
Q Consensus 137 ~~~-~~~~~D~V~~~~~~~~-----~~~~~~--~~Lk~gG~lv~~~~~ 176 (215)
... ..++||+|+++++... .++.+. ++|+++|.+++.++.
T Consensus 76 ~l~~~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 76 AIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp HHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred cccccccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 322 2378999999988632 223333 469999999997654
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=1.8e-13 Score=109.24 Aligned_cols=98 Identities=21% Similarity=0.216 Sum_probs=78.0
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++..++++ |. .+|+++|.++ +++.|++....++.. .++.++.++..+...+.++||
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~-Ga-~~V~avd~s~-~~~~a~~~~~~~~~~-----~~i~~i~~~~~~l~~~~~~~D 107 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKH-GA-KHVIGVDMSS-IIEMAKELVELNGFS-----DKITLLRGKLEDVHLPFPKVD 107 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CC-SEEEEEESST-HHHHHHHHHHHTTCT-----TTEEEEESCTTTSCCSSSCEE
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHh-CC-CEEEEEeCCH-HHHHHHHHHHHhCcc-----ccceEEEeehhhccCccccee
Confidence 456899999999999999988887 44 6899999986 668888888877665 789999999887765557999
Q ss_pred EEEEccCCCC---------chHHHHHhcCCCcEEE
Q 028002 146 AIHVGAAAPE---------IPQALIDQLKPGGRMV 171 (215)
Q Consensus 146 ~V~~~~~~~~---------~~~~~~~~Lk~gG~lv 171 (215)
+|++...... +..+..++|||||.++
T Consensus 108 ~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 108 IIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 9998654321 2345568999999875
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.47 E-value=2.3e-14 Score=113.84 Aligned_cols=103 Identities=22% Similarity=0.192 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~ 141 (215)
..++.+|||++||+|..+..++... .+|+++|.|+.+++.+++++..+++ .+++++.+|..+.. ...
T Consensus 143 ~~~g~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl------~~~~~i~~d~~~~~~~~~~~~ 213 (318)
T d1wxxa2 143 RFRGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDLLRRLEKEG 213 (318)
T ss_dssp GCCEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHHHHHHHHTT
T ss_pred HhCCCeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCC------CCcceeeccHHHHhhhhHhhh
Confidence 3468899999999999999988653 7899999999999999999998876 57999999976521 133
Q ss_pred CCccEEEEccCCC---------------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 142 APYDAIHVGAAAP---------------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 142 ~~~D~V~~~~~~~---------------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
++||+|+++++.- .+...+.++|+|||.|++++++.
T Consensus 214 ~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 214 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 6899999998752 23346788999999999988764
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.47 E-value=2.3e-13 Score=104.89 Aligned_cols=100 Identities=25% Similarity=0.330 Sum_probs=83.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..+..+|||||||+|..+..++++. |+.+++++|+ +.+++.+++++...+.. +++.++.+|.....+ ..||
T Consensus 79 ~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~-----~ri~~~~~d~~~~~p--~~~D 149 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLA-----DRVTVAEGDFFKPLP--VTAD 149 (256)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCT-----TTEEEEECCTTSCCS--CCEE
T ss_pred CccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCc-----ceeeeeeeecccccc--ccch
Confidence 4566899999999999999999995 7789999997 78899999998877654 689999999876544 4699
Q ss_pred EEEEccCCCCc--------hHHHHHhcCCCcEEEEEe
Q 028002 146 AIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 146 ~V~~~~~~~~~--------~~~~~~~Lk~gG~lv~~~ 174 (215)
+|++...++++ ++++.+.|||||++++.-
T Consensus 150 ~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d 186 (256)
T d1qzza2 150 VVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD 186 (256)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEE
Confidence 99999888754 356889999999999853
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=5e-13 Score=103.23 Aligned_cols=135 Identities=15% Similarity=0.203 Sum_probs=99.3
Q ss_pred CCCcCCCccccCCcccchhH---HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHH
Q 028002 34 PPYVDSPMAIGYNATISAPH---MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSI 110 (215)
Q Consensus 34 ~~y~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~ 110 (215)
..|....+.++.+..++.|+ ++..++..+. ..+..+|+|+|||+|..+..+++. ++.+|+++|+|+.+++.|+
T Consensus 75 ~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~--~~~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~ 150 (271)
T d1nv8a_ 75 KEFMGLSFLVEEGVFVPRPETEELVELALELIR--KYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIAR 150 (271)
T ss_dssp EEETTEEEECCTTSCCCCTTHHHHHHHHHHHHH--HHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHH
T ss_pred EEEeeeEEEEecCccCchhhhhhhhhhhhhhhc--cccccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHH
Confidence 34445556667777787777 2233333333 233468999999999999998854 4589999999999999999
Q ss_pred HHHHhhcccCcccCCCeEEEeCCCCCCCCC-CCCccEEEEccCCCC--------------------------chHHHHHh
Q 028002 111 QNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAIHVGAAAPE--------------------------IPQALIDQ 163 (215)
Q Consensus 111 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~~D~V~~~~~~~~--------------------------~~~~~~~~ 163 (215)
+|+..++.. .++.+..+++.+.... .++||+|+++++.-. +.+-+.++
T Consensus 151 ~Na~~~~~~-----~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~ 225 (271)
T d1nv8a_ 151 KNAERHGVS-----DRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRY 225 (271)
T ss_dssp HHHHHTTCT-----TSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHC
T ss_pred HHHHHcCCC-----ceeEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHh
Confidence 999987765 5788888988775542 268999999987400 00225678
Q ss_pred cCCCcEEEEEeCCC
Q 028002 164 LKPGGRMVIPVGNI 177 (215)
Q Consensus 164 Lk~gG~lv~~~~~~ 177 (215)
|+|||++++.++..
T Consensus 226 L~~~G~l~~Eig~~ 239 (271)
T d1nv8a_ 226 DTSGKIVLMEIGED 239 (271)
T ss_dssp CCTTCEEEEECCTT
T ss_pred cCCCCEEEEEECHH
Confidence 99999999998754
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=5e-13 Score=105.80 Aligned_cols=98 Identities=20% Similarity=0.206 Sum_probs=76.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++..+++. |+ .+|+++|.++.+.. +++.....+.. .++.++.++..+......+||
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~-Ga-~~V~aid~s~~~~~-a~~~~~~~~~~-----~~i~~~~~~~~~l~~~~~~~D 104 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKA-GA-KKVLGVDQSEILYQ-AMDIIRLNKLE-----DTITLIKGKIEEVHLPVEKVD 104 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEESSTHHHH-HHHHHHHTTCT-----TTEEEEESCTTTSCCSCSCEE
T ss_pred cCCcCEEEEECCCCCHHHHHHHHc-CC-CEEEEEeCHHHHHH-HHHHHHHhCCC-----ccceEEEeeHHHhcCccccce
Confidence 557899999999999999999987 55 68999999998764 55555555543 789999999988665557999
Q ss_pred EEEEccCCCC---------chHHHHHhcCCCcEEE
Q 028002 146 AIHVGAAAPE---------IPQALIDQLKPGGRMV 171 (215)
Q Consensus 146 ~V~~~~~~~~---------~~~~~~~~Lk~gG~lv 171 (215)
+|++...... +.....++|||||.++
T Consensus 105 ~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 105 VIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp EEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 9998654432 2234567899999986
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.45 E-value=8.5e-14 Score=110.30 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=86.3
Q ss_pred cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----C
Q 028002 65 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----E 140 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~ 140 (215)
...++.+|||++||+|.+++.++.. |. .+|+++|+|+.+++.+++++..++.. ..+++++.+|+.+.+. .
T Consensus 141 ~~~~g~~VLdlf~~~G~~sl~aa~~-ga-~~V~~vD~s~~a~~~a~~N~~~n~l~----~~~~~~i~~d~~~~l~~~~~~ 214 (317)
T d2b78a2 141 GSAAGKTVLNLFSYTAAFSVAAAMG-GA-MATTSVDLAKRSRALSLAHFEANHLD----MANHQLVVMDVFDYFKYARRH 214 (317)
T ss_dssp TTTBTCEEEEETCTTTHHHHHHHHT-TB-SEEEEEESCTTHHHHHHHHHHHTTCC----CTTEEEEESCHHHHHHHHHHT
T ss_pred HhhCCCceeecCCCCcHHHHHHHhC-CC-ceEEEecCCHHHHHHHHHHHHHhccc----CcceEEEEccHHHHHHHHHhh
Confidence 3667899999999999999888764 43 68999999999999999999887753 3589999999865322 3
Q ss_pred CCCccEEEEccCC---------------CCchHHHHHhcCCCcEEEEEeCCC
Q 028002 141 FAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 141 ~~~~D~V~~~~~~---------------~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
..+||+|+++++. ..+...+.++|+|||.|++++++.
T Consensus 215 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 215 HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 3689999999873 124456788999999999988764
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3.6e-13 Score=101.17 Aligned_cols=112 Identities=23% Similarity=0.303 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+.. ..+..+|||+|||+|+.+..++..+..+++++++|.++...+.|++++...+.. ++++++.+++
T Consensus 47 ~g~lL~~L~~-~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~-----~~i~~~~Gda 120 (219)
T d2avda1 47 QAQLLANLAR-LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE-----HKIDLRLKPA 120 (219)
T ss_dssp HHHHHHHHHH-HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT-----TTEEEEESCH
T ss_pred HHHHHHHHHH-ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc-----ceEEEEEeeh
Confidence 4666666652 445689999999999999999998866799999999999999999999988765 7899999997
Q ss_pred CCCCC------CCCCccEEEEccCCCCch---HHHHHhcCCCcEEEE
Q 028002 135 RKGWP------EFAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVI 172 (215)
Q Consensus 135 ~~~~~------~~~~~D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~ 172 (215)
.+..+ ..++||+|+.+..-.... +.+.++|+|||.+++
T Consensus 121 ~e~l~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~ 167 (219)
T d2avda1 121 LETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAV 167 (219)
T ss_dssp HHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEE
T ss_pred hhcchhhhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 65321 236899999998876654 578899999999998
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.3e-13 Score=110.01 Aligned_cols=121 Identities=17% Similarity=0.082 Sum_probs=89.6
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc---CcccCCC
Q 028002 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA---PLLKEGS 126 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~---~~~~~~~ 126 (215)
..+.....+++.+. ++++++|||+|||+|..+..+++..+ ..+++|+|+++.+++.|++........ ......+
T Consensus 135 ~~~~~~~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~ 211 (328)
T d1nw3a_ 135 TSFDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE 211 (328)
T ss_dssp CCHHHHHHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred hHHHHHHHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence 34556778888876 89999999999999999999998854 368999999999999998876553210 0122368
Q ss_pred eEEEeCCCCCCCCCCC--CccEEEEccCCC-----CchHHHHHhcCCCcEEEEE
Q 028002 127 LSVHVGDGRKGWPEFA--PYDAIHVGAAAP-----EIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 127 v~~~~~d~~~~~~~~~--~~D~V~~~~~~~-----~~~~~~~~~Lk~gG~lv~~ 173 (215)
++++++|+.+...... .+|+|+++.... ..+.++.+.|||||++++.
T Consensus 212 i~~~~gd~~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 212 YTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp EEEEECCTTSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred eEEEECcccccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEe
Confidence 9999999876432211 357888765432 2335678899999999874
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.44 E-value=2.2e-13 Score=102.77 Aligned_cols=113 Identities=23% Similarity=0.292 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
...++..+.. ..+..+|||+|+++|+.+..++..++++++++++|.++...+.|++++...+.. ++++++.+++
T Consensus 47 ~g~~L~~L~~-~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~-----~~i~~~~g~a 120 (227)
T d1susa1 47 EGQFLSMLLK-LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD-----HKIDFREGPA 120 (227)
T ss_dssp HHHHHHHHHH-HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG-----GGEEEEESCH
T ss_pred HHHHHHHHHH-hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc-----cceeeeehHH
Confidence 4555665542 334579999999999999999999877799999999999999999999988765 6899999998
Q ss_pred CCCCC-------CCCCccEEEEccCCCCch---HHHHHhcCCCcEEEEE
Q 028002 135 RKGWP-------EFAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVIP 173 (215)
Q Consensus 135 ~~~~~-------~~~~~D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~~ 173 (215)
.+..+ ..++||+|+.+..-...+ +.+.++|+|||.+++-
T Consensus 121 ~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 121 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp HHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred HHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEc
Confidence 75432 136899999998776644 5778999999999983
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=3.5e-13 Score=106.94 Aligned_cols=98 Identities=20% Similarity=0.190 Sum_probs=76.9
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||+|||+|.++..+++. |. .+|+++|.++.+ ..+++.+..++.. +++.++.++..+.....++||
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~-Ga-~~V~avd~s~~~-~~a~~~~~~n~~~-----~~v~~~~~~~~~~~~~~~~~D 102 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKA-GA-RKVIGIECSSIS-DYAVKIVKANKLD-----HVVTIIKGKVEEVELPVEKVD 102 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-TC-SEEEEEECSTTH-HHHHHHHHHTTCT-----TTEEEEESCTTTCCCSSSCEE
T ss_pred cCCcCEEEEEecCCcHHHHHHHHh-CC-CEEEEEcCcHHH-hhhhhHHHHhCCc-----cccceEeccHHHcccccceeE
Confidence 446899999999999999999887 55 589999999764 6667777776654 689999999988665557999
Q ss_pred EEEEccCCC---------CchHHHHHhcCCCcEEE
Q 028002 146 AIHVGAAAP---------EIPQALIDQLKPGGRMV 171 (215)
Q Consensus 146 ~V~~~~~~~---------~~~~~~~~~Lk~gG~lv 171 (215)
+|++..... .+...+.++|||||.++
T Consensus 103 ~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 103 IIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp EEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 998765432 23346678999999986
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.6e-13 Score=107.06 Aligned_cols=107 Identities=20% Similarity=0.186 Sum_probs=76.1
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhC---C--CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC-----
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVG---P--QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----- 136 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~---~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~----- 136 (215)
++..+|||+|||+|..+..+++.+. + ...++++|+|+.+++.+++++...... ..-.+++...++..
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 115 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL---ENVKFAWHKETSSEYQSRM 115 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC---TTEEEEEECSCHHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc---ccccccchhhhhhhhcchh
Confidence 3345899999999999888876531 1 247899999999999999987653321 11133444444321
Q ss_pred -CCCCCCCccEEEEccCCCCch------HHHHHhcCCCcEEEEEeCC
Q 028002 137 -GWPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 137 -~~~~~~~~D~V~~~~~~~~~~------~~~~~~Lk~gG~lv~~~~~ 176 (215)
.....++||+|++...++++. +.+.++|+|||.|++.+.+
T Consensus 116 ~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 116 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 162 (280)
T ss_dssp TTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEec
Confidence 122347899999999886643 5789999999999987754
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.42 E-value=2.8e-13 Score=99.12 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=94.3
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCC
Q 028002 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 125 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~ 125 (215)
+..++...+...+...+. +.-++.+|||++||+|.++..++.+ |. .+|+++|.++.+++.+++++...+.. .
T Consensus 20 ~~RPt~~~vrealFn~l~-~~~~~~~vLDlfaGsG~~g~ea~sr-Ga-~~v~~ve~~~~a~~~~~~N~~~~~~~-----~ 91 (182)
T d2fhpa1 20 NTRPTTDKVKESIFNMIG-PYFDGGMALDLYSGSGGLAIEAVSR-GM-DKSICIEKNFAALKVIKENIAITKEP-----E 91 (182)
T ss_dssp SSCCCCHHHHHHHHHHHC-SCCSSCEEEETTCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHHHHHTCG-----G
T ss_pred CcCcCcHHHHHHHHHHHH-HhcCCCEEEEcccccccccceeeec-ch-hHHHHHHHHHHHHHHHHHHhhhhhcc-----c
Confidence 334455556667777775 3456899999999999999999988 44 68999999999999999999877654 5
Q ss_pred CeEEEeCCCCCCCC----CCCCccEEEEccCCCC-----chHHHH--HhcCCCcEEEEEeCCC
Q 028002 126 SLSVHVGDGRKGWP----EFAPYDAIHVGAAAPE-----IPQALI--DQLKPGGRMVIPVGNI 177 (215)
Q Consensus 126 ~v~~~~~d~~~~~~----~~~~~D~V~~~~~~~~-----~~~~~~--~~Lk~gG~lv~~~~~~ 177 (215)
++.++++|+..... ...+||+|++++++.. .++.+. .+|+++|++++.+...
T Consensus 92 ~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~~~ 154 (182)
T d2fhpa1 92 KFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT 154 (182)
T ss_dssp GEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred ccccccccchhhhhhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcCCC
Confidence 89999999865321 2358999999998632 234443 3699999999876543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.39 E-value=9.9e-13 Score=103.11 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=83.2
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCC
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 135 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~ 135 (215)
..+.+.+. ...++.+|||++||+|.+++.++.. | .+|+++|.|+.+++.|++|+..++.. ..+++++++|+.
T Consensus 121 ~~~~~~~~-~~~~~~rVLdlf~~tG~~sl~aa~~-G--A~V~~VD~s~~al~~a~~N~~ln~~~----~~~~~~i~~D~~ 192 (309)
T d2igta1 121 EWLKNAVE-TADRPLKVLNLFGYTGVASLVAAAA-G--AEVTHVDASKKAIGWAKENQVLAGLE----QAPIRWICEDAM 192 (309)
T ss_dssp HHHHHHHH-HSSSCCEEEEETCTTCHHHHHHHHT-T--CEEEEECSCHHHHHHHHHHHHHHTCT----TSCEEEECSCHH
T ss_pred HHHHHHHh-hccCCCeEEEecCCCcHHHHHHHhC-C--CeEEEEeChHHHHHHHHHhhhhhccc----CCcEEEEeCCHH
Confidence 33333443 3556789999999999999999876 3 58999999999999999999887753 247899999987
Q ss_pred CCCC----CCCCccEEEEccCC----------------CCchHHHHHhcCCCcEEEEEe
Q 028002 136 KGWP----EFAPYDAIHVGAAA----------------PEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 136 ~~~~----~~~~~D~V~~~~~~----------------~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
..+. ....||+|+++++. ..+...+..+|+|||.+++.+
T Consensus 193 ~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 193 KFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp HHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred HhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 5432 22689999999863 112245678999998755543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=6.7e-14 Score=107.61 Aligned_cols=118 Identities=18% Similarity=0.033 Sum_probs=77.0
Q ss_pred HHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCccc--------------
Q 028002 58 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK-------------- 123 (215)
Q Consensus 58 ~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-------------- 123 (215)
+.+.+.....++.+|||+|||+|..+..++... . .+|+|+|+|+.+++.|++++..........
T Consensus 41 ~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~-~-~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (257)
T d2a14a1 41 LHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS-F-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSG 118 (257)
T ss_dssp HHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGT-E-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGG
T ss_pred HHHHhcccCCCCCEEEEECCCCCHhHHHHhccc-c-CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccc
Confidence 333333234567899999999999887776552 2 579999999999999999886533210000
Q ss_pred ---------CCCe-EEEeCCCC----CCCCCCCCccEEEEccCCCCc----------hHHHHHhcCCCcEEEEEeCCC
Q 028002 124 ---------EGSL-SVHVGDGR----KGWPEFAPYDAIHVGAAAPEI----------PQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 124 ---------~~~v-~~~~~d~~----~~~~~~~~~D~V~~~~~~~~~----------~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
...+ .....+.. ......+.||+|++...++++ ++++.++|||||.+++.....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~ 196 (257)
T d2a14a1 119 RWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR 196 (257)
T ss_dssp GHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence 0001 11222221 112234789999998877554 367889999999999976543
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.39 E-value=1.2e-12 Score=106.34 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccC---cccCCCe
Q 028002 51 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP---LLKEGSL 127 (215)
Q Consensus 51 ~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~---~~~~~~v 127 (215)
.+.....+++.+. ++++++|||+|||+|..+..+|...+. .+++|+|+++.+++.|+++........ .......
T Consensus 201 ~~~~i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~-~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~ 277 (406)
T d1u2za_ 201 LPNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV 277 (406)
T ss_dssp CHHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred CHHHHHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 4556888889887 999999999999999999999988753 589999999999999999887543210 0111233
Q ss_pred EEE-eCCCCCCCC---CCCCccEEEEccCC-----CCchHHHHHhcCCCcEEEEE
Q 028002 128 SVH-VGDGRKGWP---EFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 128 ~~~-~~d~~~~~~---~~~~~D~V~~~~~~-----~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+. .++...... ....+|+|+++... .+.+.++.+.|||||++++.
T Consensus 278 ~~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 278 EFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp EEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred eeeeeechhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 332 333322111 11357888876533 23446788999999999874
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=7.7e-13 Score=96.84 Aligned_cols=119 Identities=15% Similarity=0.071 Sum_probs=88.0
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028002 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
.++...+...+...+... -.+.+|||++||+|.++..++.+ |. .+|+.+|.++.+++.+++++..... .+.
T Consensus 24 RPt~~~vre~lfn~l~~~-~~~~~vLDlfaGsG~~giealsr-Ga-~~v~~VE~~~~a~~~~k~N~~~~~~------~~~ 94 (183)
T d2fpoa1 24 RPTTDRVRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSR-YA-AGATLIEMDRAVSQQLIKNLATLKA------GNA 94 (183)
T ss_dssp ---CHHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHT-TC-SEEEEECSCHHHHHHHHHHHHHTTC------CSE
T ss_pred CcCcHHHHHHHHhhhhcc-cchhhhhhhhccccceeeeEEec-Cc-ceeEEEEEeechhhHHHHHHhhccc------cce
Confidence 444444556666666532 35689999999999999999887 45 6899999999999999999987543 578
Q ss_pred EEEeCCCCCCCC-CCCCccEEEEccCCCC-ch----HHHH--HhcCCCcEEEEEeC
Q 028002 128 SVHVGDGRKGWP-EFAPYDAIHVGAAAPE-IP----QALI--DQLKPGGRMVIPVG 175 (215)
Q Consensus 128 ~~~~~d~~~~~~-~~~~~D~V~~~~~~~~-~~----~~~~--~~Lk~gG~lv~~~~ 175 (215)
.++.+|+..... ...+||+|++++++.. .. +.+. .+|+++|.+++.+.
T Consensus 95 ~ii~~d~~~~l~~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 95 RVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp EEECSCHHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred eeeeecccccccccccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 899998765432 3368999999998754 22 2333 35899999998653
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.38 E-value=5e-13 Score=100.16 Aligned_cols=112 Identities=13% Similarity=0.200 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
..+++..+.. ..+..+|||+|||+|+.+..+++.++++++++++|.++.+.+.|++++...+.. ++++++.++.
T Consensus 44 ~G~lL~~lv~-~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~-----~~i~l~~Gd~ 117 (214)
T d2cl5a1 44 KGQIMDAVIR-EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ-----DKVTILNGAS 117 (214)
T ss_dssp HHHHHHHHHH-HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG-----GGEEEEESCH
T ss_pred HHHHHHHHHH-hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC-----ccceeeeccc
Confidence 3455555542 333479999999999999999988766789999999999999999999887765 6899999998
Q ss_pred CCCCC------CCCCccEEEEccCCCCch-----HHHHHhcCCCcEEEE
Q 028002 135 RKGWP------EFAPYDAIHVGAAAPEIP-----QALIDQLKPGGRMVI 172 (215)
Q Consensus 135 ~~~~~------~~~~~D~V~~~~~~~~~~-----~~~~~~Lk~gG~lv~ 172 (215)
.+..+ ..+.||+|+.+..-.... .+..++|+|||++++
T Consensus 118 ~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 118 QDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp HHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cccccchhhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence 75432 235799999987654432 334567999998876
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.37 E-value=1.1e-12 Score=96.71 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=70.1
Q ss_pred CcccchhHHHHHHHHHHHh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028002 46 NATISAPHMHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
.++.+.+.+.+.++..+.. .--.|.+|||+|||+|.++..++.. |+ .+|+++|+++.+++.|++++
T Consensus 25 eQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~-ga-~~V~~vDid~~a~~~ar~N~----------- 91 (197)
T d1ne2a_ 25 EQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL-GA-ESVTAFDIDPDAIETAKRNC----------- 91 (197)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT-TB-SEEEEEESCHHHHHHHHHHC-----------
T ss_pred ccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHc-CC-CcccccccCHHHHHHHHHcc-----------
Confidence 5566666666666554431 1224789999999999999887776 44 68999999999999998874
Q ss_pred CCeEEEeCCCCCCCCCCCCccEEEEccCC
Q 028002 125 GSLSVHVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
.+++++.+|+.... ++||+|++++++
T Consensus 92 ~~~~~~~~D~~~l~---~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 92 GGVNFMVADVSEIS---GKYDTWIMNPPF 117 (197)
T ss_dssp TTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred ccccEEEEehhhcC---CcceEEEeCccc
Confidence 46789999986632 689999999887
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.36 E-value=6.3e-12 Score=93.21 Aligned_cols=97 Identities=23% Similarity=0.220 Sum_probs=73.0
Q ss_pred CcccchhHHHHHHHHHHHh-cCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccC
Q 028002 46 NATISAPHMHATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 124 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~ 124 (215)
+++.+.+.+...++..... .--.|.+|||+|||+|.++..++.. |. .+|+++|+|+.+++.+++++...+
T Consensus 23 ~qy~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~-g~-~~v~~vdi~~~~~~~a~~N~~~~~------- 93 (201)
T d1wy7a1 23 EQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-GA-KEVICVEVDKEAVDVLIENLGEFK------- 93 (201)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-TC-SEEEEEESCHHHHHHHHHHTGGGT-------
T ss_pred ccCCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHc-CC-CEEEEEcCcHHHHHHHHHHHHHcC-------
Confidence 3444555555555543321 1235789999999999999988766 44 689999999999999999987654
Q ss_pred CCeEEEeCCCCCCCCCCCCccEEEEccCCC
Q 028002 125 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAP 154 (215)
Q Consensus 125 ~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~ 154 (215)
.+.++..+|.... .++||+|++++++.
T Consensus 94 ~~~~~~~~d~~~~---~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 94 GKFKVFIGDVSEF---NSRVDIVIMNPPFG 120 (201)
T ss_dssp TSEEEEESCGGGC---CCCCSEEEECCCCS
T ss_pred CCceEEECchhhh---CCcCcEEEEcCccc
Confidence 4678888887664 26799999999863
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=7.7e-13 Score=106.64 Aligned_cols=149 Identities=18% Similarity=0.189 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
++..+++.+. ..++.+|||+.||+|.+++.+++.. .+|+|+|.++.+++.|++++..++. .++.++.++
T Consensus 200 l~~~v~~~~~--~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i------~n~~~~~~~ 268 (358)
T d1uwva2 200 MVARALEWLD--VQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGL------QNVTFYHEN 268 (358)
T ss_dssp HHHHHHHHHT--CCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECC
T ss_pred HHHHHHHhhc--cCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhccc------ccceeeecc
Confidence 3444445544 6678899999999999999999875 7999999999999999999988776 699999998
Q ss_pred CCCCCCC----CCCccEEEEccCCCCchHHHHHh--cCCCcEEEEEeCCCceeEEEEEEcCCCceEEEeeceEEEeeccc
Q 028002 134 GRKGWPE----FAPYDAIHVGAAAPEIPQALIDQ--LKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTS 207 (215)
Q Consensus 134 ~~~~~~~----~~~~D~V~~~~~~~~~~~~~~~~--Lk~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 207 (215)
....... ...+|+|+.+++-..+.+.+..+ ++|.-.++++++. ....+.+....+..|.......+.+.|.|+
T Consensus 269 ~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~~~~~~ivYVSCnp-~TlaRDl~~l~~~gy~l~~i~~~D~FP~T~ 347 (358)
T d1uwva2 269 LEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNP-ATLARDSEALLKAGYTIARLAMLDMFPHTG 347 (358)
T ss_dssp TTSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHHHCCSEEEEEESCH-HHHHHHHHHHHHTTCEEEEEEEECCSTTSS
T ss_pred hhhhhhhhhhhhccCceEEeCCCCccHHHHHHHHHHcCCCEEEEEeCCH-HHHHHHHHHHHHCCCeEeEEEEEecCCCCc
Confidence 8765432 25799999999876655433332 3666666666543 222333333335679999999999999999
Q ss_pred CccccCC
Q 028002 208 RDAQLRG 214 (215)
Q Consensus 208 ~~~~~~~ 214 (215)
+.|.+..
T Consensus 348 HvE~v~~ 354 (358)
T d1uwva2 348 HLESMVL 354 (358)
T ss_dssp CCEEEEE
T ss_pred cEEEEEE
Confidence 9887643
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.35 E-value=1.3e-12 Score=96.15 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
+..++++.+. +.++..+||++||+|..+..+++.+ ++++++|+|.++.+++.+++++.... .++.+++++
T Consensus 11 ll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~-------~r~~~~~~~ 80 (192)
T d1m6ya2 11 MVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS-------DRVSLFKVS 80 (192)
T ss_dssp THHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT-------TTEEEEECC
T ss_pred HHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhcccc-------ccccchhHH
Confidence 4778899987 8889999999999999999999996 66899999999999999999887643 589999998
Q ss_pred CCCC-----CCCCCCccEEEEccCCC---------------CchHHHHHhcCCCcEEEEEeCC
Q 028002 134 GRKG-----WPEFAPYDAIHVGAAAP---------------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 134 ~~~~-----~~~~~~~D~V~~~~~~~---------------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+.+. ....++||.|+.+.+.. ..++.+.++|+|||.+++....
T Consensus 81 f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 81 YREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp GGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred HhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 7642 11237899999887652 1224567899999999986654
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=7.1e-11 Score=90.27 Aligned_cols=80 Identities=13% Similarity=0.041 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC------CC
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------EF 141 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~ 141 (215)
+..++||+|||+|..+..+++.. ++.+++|+|+++.+++.|++++..+++. .++.+...+...... ..
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~-----~~~~~~~~~~~~~~~~~~~~~~~ 134 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLS-----DLIKVVKVPQKTLLMDALKEESE 134 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCT-----TTEEEEECCTTCSSTTTSTTCCS
T ss_pred ccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCC-----cceeeeeeccHHhhhhhhhhccc
Confidence 34689999999999999999886 5689999999999999999999988775 678888766543221 23
Q ss_pred CCccEEEEccCC
Q 028002 142 APYDAIHVGAAA 153 (215)
Q Consensus 142 ~~~D~V~~~~~~ 153 (215)
+.||+|+|++++
T Consensus 135 ~~fD~ivsNPPY 146 (250)
T d2h00a1 135 IIYDFCMCNPPF 146 (250)
T ss_dssp CCBSEEEECCCC
T ss_pred CceeEEEecCcc
Confidence 579999999986
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=9.7e-12 Score=95.98 Aligned_cols=118 Identities=17% Similarity=0.104 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCc--------------
Q 028002 56 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL-------------- 121 (215)
Q Consensus 56 ~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~-------------- 121 (215)
..+-+.+.....++.+|||+|||+|..+...+.... .+|+++|+|+.+++.+++++......-.
T Consensus 42 ~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 119 (263)
T d2g72a1 42 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGK 119 (263)
T ss_dssp HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCS
T ss_pred HHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccc
Confidence 344444443455678999999999987755444322 5899999999999999987653211000
Q ss_pred ----------ccCCCeEEEeCCCCCCC------CCCCCccEEEEccCCCCc----------hHHHHHhcCCCcEEEEEeC
Q 028002 122 ----------LKEGSLSVHVGDGRKGW------PEFAPYDAIHVGAAAPEI----------PQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 122 ----------~~~~~v~~~~~d~~~~~------~~~~~~D~V~~~~~~~~~----------~~~~~~~Lk~gG~lv~~~~ 175 (215)
.......+...|+.... ...+.||+|++...++++ ++++.++|||||.|++...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 120 GECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp CCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 00011234455554321 122579999998876543 3567889999999998643
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.18 E-value=5.6e-11 Score=86.68 Aligned_cols=122 Identities=12% Similarity=0.035 Sum_probs=87.2
Q ss_pred ccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCe
Q 028002 48 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 127 (215)
Q Consensus 48 ~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v 127 (215)
.++...+...+...+...+ .+.+|||+.||||.++..++.+ |. .+++.+|.+..+++..+++++..+.. ....
T Consensus 24 RPt~~~vrealFn~l~~~~-~~~~vLDlFaGsG~~glEalSR-GA-~~v~fVE~~~~a~~~ik~Ni~~l~~~----~~~~ 96 (183)
T d2ifta1 24 RPTGDRVKETLFNWLMPYI-HQSECLDGFAGSGSLGFEALSR-QA-KKVTFLELDKTVANQLKKNLQTLKCS----SEQA 96 (183)
T ss_dssp ----CHHHHHHHHHHHHHH-TTCEEEETTCTTCHHHHHHHHT-TC-SEEEEECSCHHHHHHHHHHHHHTTCC----TTTE
T ss_pred CcCcHHHHHHHHHHhhhhc-ccceEeecccCccceeeeeeee-cc-eeeEEeecccchhhhHhhHHhhhccc----cccc
Confidence 3444445666677775333 5789999999999999999998 55 69999999999999999999876542 2356
Q ss_pred EEEeCCCCCC---CCCCCCccEEEEccCCCCc-----hHHHH--HhcCCCcEEEEEeCC
Q 028002 128 SVHVGDGRKG---WPEFAPYDAIHVGAAAPEI-----PQALI--DQLKPGGRMVIPVGN 176 (215)
Q Consensus 128 ~~~~~d~~~~---~~~~~~~D~V~~~~~~~~~-----~~~~~--~~Lk~gG~lv~~~~~ 176 (215)
.+...|.... .....+||+|+++++...- ++.+. .+|+++|.+++..+.
T Consensus 97 ~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 97 EVINQSSLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEK 155 (183)
T ss_dssp EEECSCHHHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred ccccccccccccccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence 6666664432 2233579999999998652 23333 468999999997654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.18 E-value=8.3e-11 Score=92.72 Aligned_cols=106 Identities=17% Similarity=0.203 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCcc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 145 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D 145 (215)
..++.+|||++||.|+=+..++..+...+.+++.|.++..+...++++...+. .++.+...|..........||
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~------~~i~~~~~d~~~~~~~~~~fD 187 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILFHSSSLHIGELNVEFD 187 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEESSCGGGGGGGCCCEE
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh------hcccccccccccccccccccc
Confidence 78899999999999999999999887778999999999999999999988765 577777777665444446899
Q ss_pred EEEEccCCCC----------------------------chHHHHHhcCCCcEEEEEeCCC
Q 028002 146 AIHVGAAAPE----------------------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 146 ~V~~~~~~~~----------------------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.|+++.++.. ++..+.+.|||||.|++++++.
T Consensus 188 ~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 9999887511 2235678999999999998874
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.13 E-value=2.8e-10 Score=90.27 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=80.6
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCC----CCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGP----QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~----~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (215)
..++.+|||.|||+|.+...+...+.. ..+++|+|+++.++..|+.++...+ ....+..+|.......
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~~~- 186 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-------QKMTLLHQDGLANLLV- 186 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-------CCCEEEESCTTSCCCC-
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh-------hhhhhhcccccccccc-
Confidence 455679999999999999988766522 2479999999999999988876654 4567777776655444
Q ss_pred CCccEEEEccCCCC------------------------chHHHHHhcCCCcEEEEEeCCC
Q 028002 142 APYDAIHVGAAAPE------------------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 142 ~~~D~V~~~~~~~~------------------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.+||+|++++++.. ++..+.+.|+|||++++.+|+.
T Consensus 187 ~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 187 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred ccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 78999999998621 2456789999999988877654
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=7.6e-10 Score=86.35 Aligned_cols=105 Identities=14% Similarity=0.170 Sum_probs=84.1
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC---CC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE---FA 142 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~ 142 (215)
..++.+|||++||.|+-+..++..+++.++++++|+++..++..++++...+. .++.+...|.....+. .+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~------~~~~~~~~d~~~~~~~~~~~~ 165 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAVSPSDPRYH 165 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGSCTTCGGGT
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc------cceeeeehhhhhhcccccccc
Confidence 78899999999999999999999887778999999999999999999998765 6889988887654332 25
Q ss_pred CccEEEEccCCCCc-------------------h-----------HHHHHhcCCCcEEEEEeCCC
Q 028002 143 PYDAIHVGAAAPEI-------------------P-----------QALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 143 ~~D~V~~~~~~~~~-------------------~-----------~~~~~~Lk~gG~lv~~~~~~ 177 (215)
.||.|+++.++... . ..+. .+++||.|++++++-
T Consensus 166 ~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 166 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred eeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 79999999875210 0 0112 479999999998763
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=99.07 E-value=3.9e-10 Score=85.17 Aligned_cols=91 Identities=14% Similarity=0.058 Sum_probs=71.3
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEE
Q 028002 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 129 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~ 129 (215)
..+.+...+++.+. +.++++|||||||+|.+|..+++.. .+++++|+++.+++..++++.. .+++++
T Consensus 5 ~d~~i~~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~--------~~n~~i 71 (235)
T d1qama_ 5 TSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD--------HDNFQV 71 (235)
T ss_dssp CCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT--------CCSEEE
T ss_pred CCHHHHHHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhc--------ccchhh
Confidence 34455677777765 7889999999999999999999884 7899999999999998876543 268999
Q ss_pred EeCCCCCCCCCCCCccEEEEccCC
Q 028002 130 HVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 130 ~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
+.+|+............|+++.++
T Consensus 72 ~~~D~l~~~~~~~~~~~vv~NLPY 95 (235)
T d1qama_ 72 LNKDILQFKFPKNQSYKIFGNIPY 95 (235)
T ss_dssp ECCCGGGCCCCSSCCCEEEEECCG
T ss_pred hhhhhhhccccccccceeeeeehh
Confidence 999998754432344467777665
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=4.5e-10 Score=87.31 Aligned_cols=105 Identities=20% Similarity=0.291 Sum_probs=81.3
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC-CCCCCCc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-WPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~ 144 (215)
..++.+|||+++|.|+=+..++..+ .+++++++|.++..+...+++++..+. .++.....+.... ....+.|
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r~g~------~~~~~~~~~~~~~~~~~~~~f 172 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGM------KATVKQGDGRYPSQWCGEQQF 172 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTC------CCEEEECCTTCTHHHHTTCCE
T ss_pred ccccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhcccc------cceeeeccccccchhcccccc
Confidence 7889999999999999999999874 558999999999999999999988765 3555544443321 1233689
Q ss_pred cEEEEccCCCC----------------------------chHHHHHhcCCCcEEEEEeCCC
Q 028002 145 DAIHVGAAAPE----------------------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~~~----------------------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|.|+++.++.. +++.+.+.|||||+|++++++.
T Consensus 173 d~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 173 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred cEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 99999987611 2234667899999999999874
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.03 E-value=2.3e-10 Score=85.57 Aligned_cols=107 Identities=22% Similarity=0.176 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC
Q 028002 53 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 132 (215)
Q Consensus 53 ~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~ 132 (215)
.+...|++.+. ..++.+|||.|||+|.+...+.+.......++|+|+++..+..+ ....+..+
T Consensus 6 ~i~~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------------~~~~~~~~ 68 (223)
T d2ih2a1 6 EVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------PWAEGILA 68 (223)
T ss_dssp HHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------TTEEEEES
T ss_pred HHHHHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------------ccceeeee
Confidence 34556666665 67789999999999999988887766557899999998754322 34567777
Q ss_pred CCCCCCCCCCCccEEEEccCCCC-----------------------------------chHHHHHhcCCCcEEEEEeCCC
Q 028002 133 DGRKGWPEFAPYDAIHVGAAAPE-----------------------------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 133 d~~~~~~~~~~~D~V~~~~~~~~-----------------------------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
+....... ..||+|+++++... ++..+.+.|++||++.+.+|+.
T Consensus 69 ~~~~~~~~-~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~ 147 (223)
T d2ih2a1 69 DFLLWEPG-EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 147 (223)
T ss_dssp CGGGCCCS-SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred ehhccccc-cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence 77665444 78999999987521 1235678999999999877654
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.95 E-value=7e-10 Score=86.28 Aligned_cols=106 Identities=17% Similarity=0.175 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~ 146 (215)
...+||-+|.|.|..+..+++. .+..+++++|+++.+++.+++.+..... .+..++++++.+|+..... ..+.||+
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEIDp~Vi~~a~~~~~~~~~--~~~d~rv~v~~~Da~~~l~~~~~~yDv 165 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKH-DSVEKAILCEVDGLVIEAARKYLKQTSC--GFDDPRAEIVIANGAEYVRKFKNEFDV 165 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTS-TTCSEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred CCceEEEecCCchHHHHHHHhc-CCCceEEEecCCHHHHHHHHHHHHhhcc--cccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence 3479999999999999999876 3457899999999999999987754332 1345799999999876543 2368999
Q ss_pred EEEccCCC-----------CchHHHHHhcCCCcEEEEEeCC
Q 028002 147 IHVGAAAP-----------EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 147 V~~~~~~~-----------~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
|+++...+ ++.+.+.+.|+|||++++..++
T Consensus 166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 99875332 2346789999999999997655
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.94 E-value=1.4e-09 Score=83.95 Aligned_cols=107 Identities=21% Similarity=0.210 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
....+||-+|-|.|..+..+.+.. +..+++++|+++.+++.|++.+..... ....++++++.+|+..... ..++||
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~--~~~d~r~~i~~~D~~~~l~~~~~~yD 150 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAG--KLDDPRVDVQVDDGFMHIAKSENQYD 150 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHT--TTTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcc--cccCCCeEEEechHHHHHhhcCCCCC
Confidence 445799999999999999998763 447999999999999999998754322 1345799999999876433 236899
Q ss_pred EEEEccCC----------CCchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~----------~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+.+... .++.+.+.+.|+|+|+++...++
T Consensus 151 vIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s 191 (274)
T d1iy9a_ 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (274)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence 99988643 23457899999999999987654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.94 E-value=5.3e-10 Score=87.86 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=81.5
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
....+||.+|.|.|..+..+++. .+..+++++|+++.+++.|++.+..... .....++++++.+|+..... ...+||
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~-~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLERTEERYD 153 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred CCcceEEEeCCCchHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCccccc-CccCCCceEEEEchHHHHhhhcCCccc
Confidence 34579999999999999998876 4557999999999999999998754221 11344799999999876433 236899
Q ss_pred EEEEccCCC-------------CchHHHHHhcCCCcEEEEEeC
Q 028002 146 AIHVGAAAP-------------EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 146 ~V~~~~~~~-------------~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
+|+++..-+ ++.+.+.+.|+|||++++..+
T Consensus 154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 999775321 234678999999999998553
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.90 E-value=1.3e-09 Score=85.26 Aligned_cols=107 Identities=16% Similarity=0.109 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
....+||-+|.|.|..+..+++. .+..+++++|+++.+++.+++.+..... .+..++++++.+|+..... ....||
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~-~~v~~v~~VEID~~Vv~~a~~~~~~~~~--~~~dprv~i~i~Da~~~l~~~~~~yD 181 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMSC--GFSHPKLDLFCGDGFEFLKNHKNEFD 181 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTSG--GGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHc-CCcceEEEEcccHHHHHHHHhhchhhcc--ccCCCCeEEEEchHHHHHHhCCCCCC
Confidence 34579999999999999999876 3447999999999999999988754322 2455899999999876433 236899
Q ss_pred EEEEccCC----------CCchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~----------~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+++... .++.+.+.+.|+|||+++.-..+
T Consensus 182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s 222 (312)
T d2b2ca1 182 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 222 (312)
T ss_dssp EEEECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence 99988643 23457889999999999997654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.90 E-value=5.3e-09 Score=85.66 Aligned_cols=124 Identities=17% Similarity=0.168 Sum_probs=94.2
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCC------------CeEEEEecChHHHHHHHHHH
Q 028002 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ------------GRAVGVEHIPELVVSSIQNI 113 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~------------~~v~~~D~s~~~~~~a~~~~ 113 (215)
|++.+...+...|++.+. ..++.+|+|.+||+|.+...+.+.+... ..++|+|+++.....|+-++
T Consensus 142 G~f~TP~~Iv~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~ 219 (425)
T d2okca1 142 GQYFTPRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL 219 (425)
T ss_dssp GGGCCCHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred hhhccchhhhHhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhh
Confidence 667777777888888776 6678899999999999998887765211 25999999999999998887
Q ss_pred HhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEEEccCCCC-----------------------chHHHHHhcCCCcEE
Q 028002 114 EKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE-----------------------IPQALIDQLKPGGRM 170 (215)
Q Consensus 114 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~~~~~~~~-----------------------~~~~~~~~Lk~gG~l 170 (215)
.-.+.. .....+..+|....... ..||+|++++++.. ++..+.+.|++||++
T Consensus 220 ~l~g~~----~~~~~i~~~d~l~~~~~-~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~ 294 (425)
T d2okca1 220 YLHGIG----TDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRA 294 (425)
T ss_dssp HHTTCC----SSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred hhcCCc----cccceeecCchhhhhcc-cccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeE
Confidence 665532 23456677777655444 78999999998721 335678999999998
Q ss_pred EEEeCC
Q 028002 171 VIPVGN 176 (215)
Q Consensus 171 v~~~~~ 176 (215)
.+.+|+
T Consensus 295 ~iI~p~ 300 (425)
T d2okca1 295 AVVLPD 300 (425)
T ss_dssp EEEEEH
T ss_pred EEEech
Confidence 887664
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.90 E-value=8.8e-11 Score=89.28 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=74.8
Q ss_pred cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE
Q 028002 49 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 49 ~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
+..+.+...+++.+. ..++++|||||||+|.+|..+++.. .+++++|+|+.+++.+++++.. ..++.
T Consensus 12 L~d~~ii~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~~--------~~n~~ 78 (245)
T d1yuba_ 12 LTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKL--------NTRVT 78 (245)
T ss_dssp CCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTT--------CSEEE
T ss_pred cCCHHHHHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhhh--------ccchh
Confidence 445566788888876 7888999999999999999999984 7899999999998877665432 26899
Q ss_pred EEeCCCCCCCCCCCCccEEEEccCCC
Q 028002 129 VHVGDGRKGWPEFAPYDAIHVGAAAP 154 (215)
Q Consensus 129 ~~~~d~~~~~~~~~~~D~V~~~~~~~ 154 (215)
++.+|+.+.......++.|+++.+..
T Consensus 79 ii~~D~l~~~~~~~~~~~vv~NLPY~ 104 (245)
T d1yuba_ 79 LIHQDILQFQFPNKQRYKIVGNIPYH 104 (245)
T ss_dssp ECCSCCTTTTCCCSSEEEEEEECCSS
T ss_pred hhhhhhhccccccceeeeEeeeeehh
Confidence 99999987655546677788888764
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=1.1e-09 Score=84.89 Aligned_cols=107 Identities=20% Similarity=0.157 Sum_probs=83.0
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCcc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 145 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D 145 (215)
+...+||-+|.|.|..+..+.+.. +..+++++|+++.+++.|++.+..+.. ....++++++.+|+..... ..++||
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~--~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAI--GYSSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhcc--ccCCCCceEEEccHHHHHhcCCCCCC
Confidence 344799999999999999998763 447999999999999999998754321 1345799999999875432 236899
Q ss_pred EEEEccCC----------CCchHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~----------~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
+|+++..- .++.+.+.+.|+|||.+++.+.+
T Consensus 154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 99988643 23457889999999999996644
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.87 E-value=1.2e-09 Score=84.51 Aligned_cols=108 Identities=20% Similarity=0.183 Sum_probs=80.7
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcc----cCcccCCCeEEEeCCCCCCCCCC
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA----APLLKEGSLSVHVGDGRKGWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~v~~~~~d~~~~~~~~ 141 (215)
.....+||.+|.|.|..+..+++. +. .+++++|+++.+++.|++.+..... ......++++++.+|+.......
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~-~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~ 147 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQH-DV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN 147 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTS-CC-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred CCCCceEEEecCCchHHHHHHHHh-CC-ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence 344589999999999999888865 44 6899999999999999986632110 00122478999999987544444
Q ss_pred CCccEEEEccCCC----------CchHHHHHhcCCCcEEEEEeC
Q 028002 142 APYDAIHVGAAAP----------EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 142 ~~~D~V~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
++||+|+++...+ ++.+.+.+.|+|||++++..+
T Consensus 148 ~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~ 191 (276)
T d1mjfa_ 148 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 191 (276)
T ss_dssp CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence 7899999876542 244678999999999998553
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=1.2e-08 Score=75.31 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=84.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
++.+++|+|||.|.-++.++-. .|+.+++.+|.+...+...++.....+. .++++++..+.+.... .+||+|
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~-~p~~~~~Lves~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~~~~~-~~fD~V 136 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIV-RPEAHFTLLDSLGKRVRFLRQVQHELKL------ENIEPVQSRVEEFPSE-PPFDGV 136 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTTC------SSEEEEECCTTTSCCC-SCEEEE
T ss_pred cCCceeeeeccCCceeeehhhh-cccceEEEEecchHHHHHHHHHHHHcCC------cceeeeccchhhhccc-ccccee
Confidence 4579999999999999999877 5779999999999999999888887665 6899999988875543 689999
Q ss_pred EEccCC--CCchHHHHHhcCCCcEEEEEeCCC
Q 028002 148 HVGAAA--PEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 148 ~~~~~~--~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
++.+.. ..+.+-+.+.++++|.+++.-+..
T Consensus 137 ~sRA~~~~~~ll~~~~~~l~~~g~~~~~KG~~ 168 (207)
T d1jsxa_ 137 ISRAFASLNDMVSWCHHLPGEQGRFYALKGQM 168 (207)
T ss_dssp ECSCSSSHHHHHHHHTTSEEEEEEEEEEESSC
T ss_pred hhhhhcCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 887654 346677788999999999986654
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.86 E-value=3.4e-09 Score=82.31 Aligned_cols=108 Identities=22% Similarity=0.222 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC--CCCCc
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPY 144 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~ 144 (215)
....+||-+|-|.|..+..+++.. +..+++++|+++.+++.+++.+..... ....++++++.+|+..... ..++|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~--~~~~~r~~i~~~Da~~~l~~~~~~~y 155 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAI--GYEDPRVNLVIGDGVAFLKNAAEGSY 155 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG--GGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred CCCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhc--cccCCCcEEEEccHHHHHhhccccCc
Confidence 334799999999999999998863 446899999999999999998754322 1445899999999775442 23589
Q ss_pred cEEEEccCCC----------CchHHHHHhcCCCcEEEEEeCCC
Q 028002 145 DAIHVGAAAP----------EIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~~----------~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|+|+.+..-+ ++.+.+.+.|+|||++++.+++.
T Consensus 156 DvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 156 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred cEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 9999876542 24468899999999999976553
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=1.5e-08 Score=77.97 Aligned_cols=93 Identities=24% Similarity=0.302 Sum_probs=75.1
Q ss_pred cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE
Q 028002 49 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 49 ~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
+..+.+...+++.+. ..++..|||||+|+|.+|..+++.. .+++++|+|+.+++..++.+...... .+++
T Consensus 4 L~d~~i~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~-----~~~~ 73 (278)
T d1zq9a1 4 LKNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVA-----SKLQ 73 (278)
T ss_dssp ECCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTG-----GGEE
T ss_pred cCCHHHHHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccc-----cchh
Confidence 445667788888775 7788999999999999999999984 69999999999999999887654322 5899
Q ss_pred EEeCCCCCCCCCCCCccEEEEccCC
Q 028002 129 VHVGDGRKGWPEFAPYDAIHVGAAA 153 (215)
Q Consensus 129 ~~~~d~~~~~~~~~~~D~V~~~~~~ 153 (215)
++.+|+..... ..++.|+.+.++
T Consensus 74 ~i~~D~l~~~~--~~~~~vV~NLPY 96 (278)
T d1zq9a1 74 VLVGDVLKTDL--PFFDTCVANLPY 96 (278)
T ss_dssp EEESCTTTSCC--CCCSEEEEECCG
T ss_pred hhHHHHhhhhh--hhhhhhhcchHH
Confidence 99999987543 346778887765
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.79 E-value=8.6e-09 Score=74.57 Aligned_cols=109 Identities=23% Similarity=0.249 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 133 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d 133 (215)
++.++++.+. +.++..++|.++|.|+.+..+++.. ++|+|+|.++.+++.+++.. ..++.+++++
T Consensus 6 ll~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~~---~~viaiD~D~~ai~~a~~~~----------~~~~~~~~~~ 70 (182)
T d1wg8a2 6 LYQEALDLLA--VRPGGVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKGLH----------LPGLTVVQGN 70 (182)
T ss_dssp THHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHTC----------CTTEEEEESC
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhccc---CcEEEEhhhhhHHHHHhhcc----------ccceeEeehH
Confidence 4678888887 8899999999999999999998863 79999999999998887531 2588999988
Q ss_pred CCCCC-----CCCCCccEEEEccCCCC---------------chHHHHHhcCCCcEEEEEeCCC
Q 028002 134 GRKGW-----PEFAPYDAIHVGAAAPE---------------IPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 134 ~~~~~-----~~~~~~D~V~~~~~~~~---------------~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
..+.. ...+.+|.|+.+..... .++...+.|++||.+++.+...
T Consensus 71 f~~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs 134 (182)
T d1wg8a2 71 FRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS 134 (182)
T ss_dssp GGGHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred HHHHHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence 76521 12367999998876522 2356678899999999876543
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.77 E-value=2.2e-08 Score=73.21 Aligned_cols=108 Identities=14% Similarity=0.105 Sum_probs=68.2
Q ss_pred CCCCEEEEEcCCccHHH----HHHHHHhC---CCCeEEEEecChHHHHHHHHHHHhhccc--------------Cccc--
Q 028002 67 KPGMHALDIGSGTGYLT----ACFALMVG---PQGRAVGVEHIPELVVSSIQNIEKSAAA--------------PLLK-- 123 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~----~~l~~~~~---~~~~v~~~D~s~~~~~~a~~~~~~~~~~--------------~~~~-- 123 (215)
.+..+||++|||+|... +.+..... ..-+++|+|+++.+++.|++........ ....
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 44569999999999743 33333322 1247999999999999997533111000 0000
Q ss_pred ---------CCCeEEEeCCCCCC-CCCCCCccEEEEccCCCC--------chHHHHHhcCCCcEEEEEe
Q 028002 124 ---------EGSLSVHVGDGRKG-WPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 124 ---------~~~v~~~~~d~~~~-~~~~~~~D~V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~~ 174 (215)
...+.+...+.... .+..+.||+|+|...+.. +++.+.+.|+|||+|++-.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 02344555554433 223478999999998754 4456889999999998843
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=1.4e-08 Score=85.21 Aligned_cols=128 Identities=18% Similarity=0.209 Sum_probs=88.5
Q ss_pred CcccchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCC-----------------CeEEEEecChHHHHH
Q 028002 46 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ-----------------GRAVGVEHIPELVVS 108 (215)
Q Consensus 46 ~~~~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~-----------------~~v~~~D~s~~~~~~ 108 (215)
|++.+...+...|++.+. ..++.+|+|.+||+|.+...+.+.+... ..++|+|+++.+...
T Consensus 144 GqfyTP~~Iv~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~l 221 (524)
T d2ar0a1 144 GQYFTPRPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 221 (524)
T ss_dssp -CCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred chhccccchhHhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHH
Confidence 667777777788888776 6778899999999999988877654211 258999999999999
Q ss_pred HHHHHHhhcccCcccCCCeEEEeCCCCCC-CCCCCCccEEEEccCCCC--------------------chHHHHHhcCCC
Q 028002 109 SIQNIEKSAAAPLLKEGSLSVHVGDGRKG-WPEFAPYDAIHVGAAAPE--------------------IPQALIDQLKPG 167 (215)
Q Consensus 109 a~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~D~V~~~~~~~~--------------------~~~~~~~~Lk~g 167 (215)
|+-++.-.+....+.. .-.+..++.... ......||+|++++++-. ++..+.+.|++|
T Consensus 222 a~~nl~l~~~~~~i~~-~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~g 300 (524)
T d2ar0a1 222 ALMNCLLHDIEGNLDH-GGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 300 (524)
T ss_dssp HHHHHHTTTCCCBGGG-TBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred HHHHHHhhcccccccc-cchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcccc
Confidence 9888765543311111 112333443321 112257999999998721 446788999999
Q ss_pred cEEEEEeCC
Q 028002 168 GRMVIPVGN 176 (215)
Q Consensus 168 G~lv~~~~~ 176 (215)
|++.+.+|+
T Consensus 301 Gr~aiIlP~ 309 (524)
T d2ar0a1 301 GRAAVVVPD 309 (524)
T ss_dssp EEEEEEEEH
T ss_pred CcEEEEEeh
Confidence 999887654
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.73 E-value=3.8e-08 Score=74.48 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=70.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
....+|||+|||+|.++..++++. |..+++.+|.. ..++ ... ..++++++.+|..+..+ ..|+
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~-------~~~-----~~~ri~~~~gd~~~~~p---~~D~ 142 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKY-PLIKGINFDLP-QVIE-------NAP-----PLSGIEHVGGDMFASVP---QGDA 142 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHT-------TCC-----CCTTEEEEECCTTTCCC---CEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecch-hhhh-------ccC-----CCCCeEEecCCcccccc---cceE
Confidence 445799999999999999999995 77899999974 3322 111 22789999999876554 3599
Q ss_pred EEEccCCCCch--------HHHHHhcCCCcEEEEE
Q 028002 147 IHVGAAAPEIP--------QALIDQLKPGGRMVIP 173 (215)
Q Consensus 147 V~~~~~~~~~~--------~~~~~~Lk~gG~lv~~ 173 (215)
+++...+++.. +++.+.|+|||++++.
T Consensus 143 ~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~ 177 (244)
T d1fp1d2 143 MILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIV 177 (244)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99988887644 5678999999999884
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=1.2e-07 Score=68.28 Aligned_cols=102 Identities=23% Similarity=0.291 Sum_probs=75.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
+.++.+... .++++.+|||+||++|+.+..+++..+..++++++|..+- -..+++.++.+|.
T Consensus 10 L~EI~~k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------------~~i~~~~~~~~d~ 71 (180)
T d1ej0a_ 10 LDEIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------------DPIVGVDFLQGDF 71 (180)
T ss_dssp HHHHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------------CCCTTEEEEESCT
T ss_pred HHHHHHHhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------------cccCCceEeeccc
Confidence 345555554 4688999999999999999999988877789999997652 1126888999998
Q ss_pred CCCC--------CCCCCccEEEEccCCCC-----------------chHHHHHhcCCCcEEEEEe
Q 028002 135 RKGW--------PEFAPYDAIHVGAAAPE-----------------IPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 135 ~~~~--------~~~~~~D~V~~~~~~~~-----------------~~~~~~~~Lk~gG~lv~~~ 174 (215)
.... ....++|+|+++..... .+.-+.+.|++||.+++=+
T Consensus 72 ~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 72 RDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp TSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 7521 12367999999986521 1123578999999999844
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=2.5e-08 Score=75.70 Aligned_cols=93 Identities=11% Similarity=0.000 Sum_probs=70.1
Q ss_pred cchhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeE
Q 028002 49 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 128 (215)
Q Consensus 49 ~~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~ 128 (215)
+..+.+...+++.+. ..++..|||||||+|.+|..+++.. .+++++|+|+.+++..++.... .++++
T Consensus 4 L~d~~~~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~--------~~~~~ 70 (252)
T d1qyra_ 4 LNDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHPFL--------GPKLT 70 (252)
T ss_dssp ECCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCTTT--------GGGEE
T ss_pred cCCHHHHHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHhhh--------ccchh
Confidence 455667888888886 7788999999999999999999874 7899999999999988764322 15899
Q ss_pred EEeCCCCCCCCCC-----CCccEEEEccCCC
Q 028002 129 VHVGDGRKGWPEF-----APYDAIHVGAAAP 154 (215)
Q Consensus 129 ~~~~d~~~~~~~~-----~~~D~V~~~~~~~ 154 (215)
++.+|+....... +.--.|+.+.++.
T Consensus 71 ii~~D~l~~~~~~~~~~~~~~~~vvgNlPY~ 101 (252)
T d1qyra_ 71 IYQQDAMTFNFGELAEKMGQPLRVFGNLPYN 101 (252)
T ss_dssp EECSCGGGCCHHHHHHHHTSCEEEEEECCTT
T ss_pred HHhhhhhhhcccccccccCCCeEEEecchHH
Confidence 9999997643210 1222566666653
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.56 E-value=1.2e-07 Score=71.02 Aligned_cols=111 Identities=17% Similarity=0.189 Sum_probs=73.1
Q ss_pred chhHHHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHh---CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCC
Q 028002 50 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 126 (215)
Q Consensus 50 ~~~~~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~ 126 (215)
..|..+..+.+.+. ..+ ..+|||+|++.|..+..++..+ +.+++++++|+++....... ....+
T Consensus 64 k~p~d~~~~~eli~-~~K-Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----------~~~~~ 130 (232)
T d2bm8a1 64 KDPDTQAVYHDMLW-ELR-PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----------SDMEN 130 (232)
T ss_dssp SCHHHHHHHHHHHH-HHC-CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----------GGCTT
T ss_pred cCHHHHHHHHHHHH-HhC-CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----------ccccc
Confidence 45665555545554 244 4699999999998887766543 56689999999875432211 12268
Q ss_pred eEEEeCCCCCCCC----CCCCccEEEEccCCCCc--hH--HHHHhcCCCcEEEEE
Q 028002 127 LSVHVGDGRKGWP----EFAPYDAIHVGAAAPEI--PQ--ALIDQLKPGGRMVIP 173 (215)
Q Consensus 127 v~~~~~d~~~~~~----~~~~~D~V~~~~~~~~~--~~--~~~~~Lk~gG~lv~~ 173 (215)
++++.+|..+... ....+|.|+.++.-..- .. .+.++|++||++++.
T Consensus 131 I~~i~gDs~~~~~~~~l~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIve 185 (232)
T d2bm8a1 131 ITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIE 185 (232)
T ss_dssp EEEEECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEEC
T ss_pred eeeeecccccHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEE
Confidence 9999998764211 22468988887663221 11 345789999999983
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.52 E-value=2.6e-07 Score=69.79 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=68.3
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
....+|+|+|||+|..+..++++. |+.+++..|.. ..++.+ .. .++++++.+|+.+..+ .+|+
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~~-------~~-----~~rv~~~~gD~f~~~p---~aD~ 141 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDRP-QVVENL-------SG-----SNNLTYVGGDMFTSIP---NADA 141 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHTTC-------CC-----BTTEEEEECCTTTCCC---CCSE
T ss_pred cCceEEEEecCCccHHHHHHHHhC-CCCeEEEecCH-HHHHhC-------cc-----cCceEEEecCcccCCC---CCcE
Confidence 334689999999999999999995 77899999984 333221 21 2799999999876543 5799
Q ss_pred EEEccCCCCch--------HHHHHhcCCC---cEEEE
Q 028002 147 IHVGAAAPEIP--------QALIDQLKPG---GRMVI 172 (215)
Q Consensus 147 V~~~~~~~~~~--------~~~~~~Lk~g---G~lv~ 172 (215)
+++...+++.. +++.+.|+|| |++++
T Consensus 142 ~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli 178 (244)
T d1fp2a2 142 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTI 178 (244)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEE
T ss_pred EEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEE
Confidence 99998887544 5678899998 66666
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.50 E-value=4.5e-07 Score=68.42 Aligned_cols=90 Identities=14% Similarity=0.198 Sum_probs=68.2
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
....+|+|+|||+|..+..++++. |+.+++++|..+. ++.+ ....++.+..+|..+..+. .|.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v-i~~~------------~~~~r~~~~~~d~~~~~P~---ad~ 142 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPHV-IEDA------------PSYPGVEHVGGDMFVSIPK---ADA 142 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTTT-TTTC------------CCCTTEEEEECCTTTCCCC---CSC
T ss_pred cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHHh-hhhc------------ccCCceEEecccccccCCC---cce
Confidence 334789999999999999999995 7789999998653 2211 1226899999998776543 466
Q ss_pred EEEccCCCC--------chHHHHHhcCCCcEEEEE
Q 028002 147 IHVGAAAPE--------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 147 V~~~~~~~~--------~~~~~~~~Lk~gG~lv~~ 173 (215)
++....++. +++++.+.|+|||++++.
T Consensus 143 ~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~ 177 (243)
T d1kyza2 143 VFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVA 177 (243)
T ss_dssp EECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred EEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 666666654 446788999999998884
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.45 E-value=3e-07 Score=68.93 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---CCCCCc
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFAPY 144 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~~ 144 (215)
+..+++|+|||.|.-++.++-.. |+.+++.+|.+...+.+.+......++ .++.++.+.+.... ...+.|
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L------~n~~i~~~R~E~~~~~~~~~~~~ 142 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDRAETFGQRKDVRESY 142 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESCHHHHTTCTTTTTCE
T ss_pred CCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCC------CCcEEEeehhhhccccccccccc
Confidence 45799999999999999888764 678999999999999998888877665 68888887765422 123689
Q ss_pred cEEEEccCC--CCchHHHHHhcCCCcEEEEEeCCC
Q 028002 145 DAIHVGAAA--PEIPQALIDQLKPGGRMVIPVGNI 177 (215)
Q Consensus 145 D~V~~~~~~--~~~~~~~~~~Lk~gG~lv~~~~~~ 177 (215)
|+|++-+.. ..+.+.+...+++||.+++.-+..
T Consensus 143 D~v~sRAva~l~~ll~~~~~~l~~~g~~i~~KG~~ 177 (239)
T d1xdza_ 143 DIVTARAVARLSVLSELCLPLVKKNGLFVALKAAS 177 (239)
T ss_dssp EEEEEECCSCHHHHHHHHGGGEEEEEEEEEEECC-
T ss_pred eEEEEhhhhCHHHHHHHHhhhcccCCEEEEECCCC
Confidence 999988655 456677889999999999976553
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=98.41 E-value=1.6e-06 Score=61.44 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=71.3
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-----
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----- 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----- 138 (215)
.++++.+||-+|||. |.++..+++..| .+++++|.++..++.+++. +. ...+...+.....
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~~----ga-------~~~~~~~~~~~~~~~~~~ 89 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNC----GA-------DVTLVVDPAKEEESSIIE 89 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHT----TC-------SEEEECCTTTSCHHHHHH
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHHc----CC-------cEEEeccccccccchhhh
Confidence 388999999999996 888888998876 6899999999999988763 11 1222221111110
Q ss_pred ----CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 ----PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ----~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+.+|+|+.....+...+.+.++++++|.+++.
T Consensus 90 ~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 90 RIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp HHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEEC
T ss_pred hhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEE
Confidence 01256899998888877888999999999999874
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=98.40 E-value=7e-07 Score=63.86 Aligned_cols=96 Identities=21% Similarity=0.262 Sum_probs=72.3
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC------C
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~------~ 137 (215)
.++++.+||-+|||. |..+..+++..|. .+|+++|.++..++.+++. +. ..++...-.. .
T Consensus 24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~l----Ga--------~~~i~~~~~~~~~~v~~ 90 (174)
T d1jqba2 24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFY----GA--------TDILNYKNGHIEDQVMK 90 (174)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHH----TC--------SEEECGGGSCHHHHHHH
T ss_pred CCCCCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHHHHHhh----Cc--------cccccccchhHHHHHHH
Confidence 488999999999997 8999999998765 5799999999998888652 21 1122111111 0
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+.........+...++++|+|.+++.
T Consensus 91 ~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 91 LTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp HTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred HhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEE
Confidence 112246999999988888889999999999999985
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.37 E-value=3.8e-07 Score=72.92 Aligned_cols=108 Identities=15% Similarity=0.076 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcc---------cCCCeEEEeCCCCCCC
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL---------KEGSLSVHVGDGRKGW 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~---------~~~~v~~~~~d~~~~~ 138 (215)
++.+|||..||+|..++..+...+ ..+|++.|+|+.+++.+++|+..++..... ....+.+...|+....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 468999999999999998887755 368999999999999999999887653111 1124556666654322
Q ss_pred C-CCCCccEEEEccCC--CCchHHHHHhcCCCcEEEEEeCC
Q 028002 139 P-EFAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 139 ~-~~~~~D~V~~~~~~--~~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
. ....||+|..++-- ..+++.+.+.++.||.|.++.-+
T Consensus 124 ~~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 124 AERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HHSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HhhcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEecC
Confidence 2 22579999888632 23668889999999999998644
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=2.2e-06 Score=60.83 Aligned_cols=101 Identities=18% Similarity=0.077 Sum_probs=73.8
Q ss_pred HHHHHhcCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC
Q 028002 59 LQLLEENLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 137 (215)
Q Consensus 59 l~~l~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~ 137 (215)
++... ++++.+|+-+|+|. |.++..+++..|. .+|+++|.++..++.+++. +. +. +...+..+.
T Consensus 19 ~~~~~--~~~gd~VlI~G~G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~----Ga------~~--~~~~~~~~~ 83 (171)
T d1pl8a2 19 CRRGG--VTLGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEI----GA------DL--VLQISKESP 83 (171)
T ss_dssp HHHHT--CCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT----TC------SE--EEECSSCCH
T ss_pred HHHhC--CCCCCEEEEECCCccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHh----CC------cc--ccccccccc
Confidence 44443 88899999999998 8888888888764 5899999999999988752 22 11 222111110
Q ss_pred C--------CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 138 W--------PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 138 ~--------~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
. .....+|+|+.....+...+.+.+++++||++++.-
T Consensus 84 ~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 84 QEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp HHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECS
T ss_pred ccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEe
Confidence 0 011468999998888888899999999999998853
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=98.28 E-value=2.2e-06 Score=61.46 Aligned_cols=95 Identities=14% Similarity=0.088 Sum_probs=70.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC--------
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-------- 136 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~-------- 136 (215)
+++|.+||-+|+|. |.++..+++..|. .+|+++|.++..++.+++. +. . .++...-.+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~l----Ga-------~-~vi~~~~~~~~~~~~~i 92 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEI----GA-------D-LTLNRRETSVEERRKAI 92 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHT----TC-------S-EEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEECCCccchhheeccccccc-ccccccccccccccccccc----cc-------e-EEEeccccchHHHHHHH
Confidence 67899999999997 8999999999864 4899999999999988652 21 1 112111110
Q ss_pred -CCCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 137 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 137 -~~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.......+|+|+.........+.+.+.|++||++++.
T Consensus 93 ~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 93 MDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp HHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred HHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEE
Confidence 0112246999998888888889999999999999774
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.23 E-value=2.2e-06 Score=61.12 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=71.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-----C
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-----P 139 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-----~ 139 (215)
++++.+||-+|||. |..+..+++..|. ..++++|.++..++.+++. +. ..++..+..+.. .
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~----Ga--------~~~i~~~~~~~~~~i~~~ 92 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQL----GA--------THVINSKTQDPVAAIKEI 92 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHH----TC--------SEEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHc----CC--------eEEEeCCCcCHHHHHHHH
Confidence 78899999999997 7888888888765 6789999999999988753 21 123322221110 0
Q ss_pred CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
..+.+|+|+.........+.+.++++++|++++.
T Consensus 93 t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 93 TDGGVNFALESTGSPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp TTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEEC
T ss_pred cCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEE
Confidence 1257999999888888889999999999999874
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.14 E-value=1e-06 Score=62.54 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=66.3
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-CCCCC-CCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKG-WPEF 141 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~~-~~~~ 141 (215)
.++++.+||.+|+|. |.++..+++..| .+++++|.++..++.+++. +. + .++.. +..+. ....
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~~l----Ga------~--~~i~~~~~~~~~~~~~ 89 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMKM----GA------D--HYIATLEEGDWGEKYF 89 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHHH----TC------S--EEEEGGGTSCHHHHSC
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhhcc----CC------c--EEeeccchHHHHHhhh
Confidence 488999999999996 889999998876 6899999999998888652 22 1 12211 11110 0122
Q ss_pred CCccEEEEccCC--CCchHHHHHhcCCCcEEEEE
Q 028002 142 APYDAIHVGAAA--PEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 142 ~~~D~V~~~~~~--~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+.+|.|+..... ...++...+.|+++|++++.
T Consensus 90 ~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 90 DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEEC
T ss_pred cccceEEEEecCCccchHHHHHHHhhccceEEEe
Confidence 579988775433 22456788999999999885
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=98.13 E-value=6.6e-06 Score=58.59 Aligned_cols=96 Identities=16% Similarity=0.090 Sum_probs=72.4
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-----
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----- 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----- 138 (215)
.++++.+|+-+|||. |..+..+++..|. ..|+.+|.++..++.+++. +. -.++.....+..
T Consensus 25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~----Ga--------~~~i~~~~~~~~~~~~~ 91 (174)
T d1e3ia2 25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKAL----GA--------TDCLNPRELDKPVQDVI 91 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHT----TC--------SEEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHh----CC--------CcccCCccchhhhhhhH
Confidence 378999999999998 9999999999865 6899999999998888762 21 122221111100
Q ss_pred --CCCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028002 139 --PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 139 --~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
...+.+|+|+.....+...+...+.+++| |.+++.
T Consensus 92 ~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 92 TELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp HHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred hhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEec
Confidence 01257999999988888889999999996 999885
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.11 E-value=7.1e-06 Score=64.18 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=63.6
Q ss_pred CCc-ccchhHHHHHHHHHHHhc----CCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc
Q 028002 45 YNA-TISAPHMHATCLQLLEEN----LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 119 (215)
Q Consensus 45 ~~~-~~~~~~~~~~~l~~l~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~ 119 (215)
+|+ ++..+.+...+++.+.-. ...+..|||+|+|.|.+|..+....++ .+++++|.++...+..++.+..
T Consensus 15 ~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~~L~~~~~~---- 89 (322)
T d1i4wa_ 15 YGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKFEG---- 89 (322)
T ss_dssp GGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHTTT----
T ss_pred ccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhccC----
Confidence 344 467888888998887411 124678999999999999999987544 6899999999999988766432
Q ss_pred CcccCCCeEEEeCCCCC
Q 028002 120 PLLKEGSLSVHVGDGRK 136 (215)
Q Consensus 120 ~~~~~~~v~~~~~d~~~ 136 (215)
.++.++.+|+..
T Consensus 90 -----~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 90 -----SPLQILKRDPYD 101 (322)
T ss_dssp -----SSCEEECSCTTC
T ss_pred -----CCcEEEeCchhh
Confidence 578999998763
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.05 E-value=7.7e-06 Score=61.34 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=62.5
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcc---cCCCeEEEeCCCCCCCCC-CCCcc
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL---KEGSLSVHVGDGRKGWPE-FAPYD 145 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~---~~~~v~~~~~d~~~~~~~-~~~~D 145 (215)
.+|||..||.|..+..++... .+|+++|.++......++.+......... -..+++++.+|..+.... .+.||
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G---~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CEEEECCCcccHHHHHHHhCC---CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 489999999999999999884 78999999998877777666543321000 014889999997654432 35799
Q ss_pred EEEEccCCCC
Q 028002 146 AIHVGAAAPE 155 (215)
Q Consensus 146 ~V~~~~~~~~ 155 (215)
+|+.++++++
T Consensus 167 vIYlDPMFp~ 176 (250)
T d2oyra1 167 VVYLDPMFPH 176 (250)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCcc
Confidence 9999998853
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=98.03 E-value=8.4e-06 Score=57.58 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=70.3
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC-CCCCCC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-GWPEFA 142 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 142 (215)
.++++.+||-+|+|. |.++..+++..| .+++++|.++...+.+++ .+. + .++...... ......
T Consensus 27 ~~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~~~a~~----lGa------d--~~i~~~~~~~~~~~~~ 92 (168)
T d1uufa2 27 QAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKA----LGA------D--EVVNSRNADEMAAHLK 92 (168)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH----HTC------S--EEEETTCHHHHHTTTT
T ss_pred CCCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHHHHHhc----cCC------c--EEEECchhhHHHHhcC
Confidence 389999999999997 899999999876 577889999988877764 222 1 122211111 111225
Q ss_pred CccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 143 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+|.++.........+...+.++++|++++.
T Consensus 93 ~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 93 SFDFILNTVAAPHNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp CEEEEEECCSSCCCHHHHHTTEEEEEEEEEC
T ss_pred CCceeeeeeecchhHHHHHHHHhcCCEEEEe
Confidence 7999998888888889999999999999985
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.00 E-value=2.7e-05 Score=56.35 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=67.6
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-----
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----- 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----- 138 (215)
.++++.+||.+|||. |.++..+++..+. .+|+++|.++..++.|++. + .+...-.....+
T Consensus 22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~~----G---------a~~~~~~~~~~~~~~i~ 87 (195)
T d1kola2 22 GVGPGSTVYVAGAGPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQ----G---------FEIADLSLDTPLHEQIA 87 (195)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT----T---------CEEEETTSSSCHHHHHH
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhhcc-cceeeecccchhhHhhhhc----c---------ccEEEeCCCcCHHHHHH
Confidence 489999999999998 7788888887654 6899999999999988753 2 122221111111
Q ss_pred --CCCCCccEEEEccCC---------------CCchHHHHHhcCCCcEEEEE
Q 028002 139 --PEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 --~~~~~~D~V~~~~~~---------------~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+++..... ...++.+.+.++|||.+++.
T Consensus 88 ~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 88 ALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp HHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred HHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 122468998866543 23568899999999999885
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.98 E-value=1.5e-05 Score=56.51 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=70.7
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC-----CC
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-----GW 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~-----~~ 138 (215)
.++++.+||-+|+|. |..+..+++..+. ..++++|.++..++.+++. +. ..++..+... ..
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~----ga--------~~~i~~~~~~~~~~~~~ 95 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERL----GA--------DHVVDARRDPVKQVMEL 95 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHT----TC--------SEEEETTSCHHHHHHHH
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHHHHhhc----cc--------ceeecCcccHHHHHHHh
Confidence 368899999999998 7788888888765 6899999999988888753 21 1222222110 00
Q ss_pred CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+|+.........+...+.|+++|++++.
T Consensus 96 ~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 96 TRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp TTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEEC
T ss_pred hCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEE
Confidence 12256999999888877888899999999999974
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.93 E-value=1.1e-05 Score=56.69 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=65.7
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----C
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----E 140 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~ 140 (215)
++++.+|+-+|+|. |..+..+++..| .+++++|.++..++.+++ .+. -.++.....+... .
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~----~Ga--------~~~i~~~~~~~~~~~~~~ 90 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARK----LGA--------SLTVNARQEDPVEAIQRD 90 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTC--------SEEEETTTSCHHHHHHHH
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhhc----cCc--------cccccccchhHHHHHHHh
Confidence 88999999999997 889999999876 689999999999888865 222 1222222111100 0
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+|.++.........+...+.|+++|++++.
T Consensus 91 ~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 91 IGGAHGVLVTAVSNSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp HSSEEEEEECCSCHHHHHHHHTTEEEEEEEEEC
T ss_pred hcCCcccccccccchHHHHHHHHhcCCcEEEEE
Confidence 123455555555556778889999999999874
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=97.93 E-value=3.8e-05 Score=54.46 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=68.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-----
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----- 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----- 138 (215)
.++++.+||-+|||. |..+..+++..|. .+|+++|.++..++.+++ .+. -.++.....+..
T Consensus 24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~----lGa--------~~~i~~~~~d~~~~~~~ 90 (174)
T d1p0fa2 24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIE----LGA--------TECLNPKDYDKPIYEVI 90 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHH----TTC--------SEEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHH----cCC--------cEEEcCCCchhHHHHHH
Confidence 388999999999997 7788888888765 689999999999999875 222 122211111110
Q ss_pred --CCCCCccEEEEccCCCCchHHHHHhcCC-CcEEEEE
Q 028002 139 --PEFAPYDAIHVGAAAPEIPQALIDQLKP-GGRMVIP 173 (215)
Q Consensus 139 --~~~~~~D~V~~~~~~~~~~~~~~~~Lk~-gG~lv~~ 173 (215)
...+.+|.|+.........+.....+++ +|.+++.
T Consensus 91 ~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~v 128 (174)
T d1p0fa2 91 CEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVL 128 (174)
T ss_dssp HHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred HHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEE
Confidence 1225799999888887777777777755 5888774
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.85 E-value=3.8e-05 Score=57.07 Aligned_cols=110 Identities=10% Similarity=0.028 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 55 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 55 ~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
+.++.+.. .+.++.+|+|+|||.|+.+..++.+. ....+.|+++--...+. ......+..+-+++...+.
T Consensus 55 l~~~~~~~--~~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~-------P~~~~~~~~ni~~~~~~~d 124 (257)
T d2p41a1 55 LRWFVERN--LVTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEE-------PIPMSTYGWNLVRLQSGVD 124 (257)
T ss_dssp HHHHHHTT--SSCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCC-------CCCCCSTTGGGEEEECSCC
T ss_pred HHHHHHhc--CccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccC-------Cccccccccccccchhhhh
Confidence 34444543 37888999999999999999998763 33567777763211000 0000001113445555443
Q ss_pred CCCCCCCCCccEEEEccCCC------------CchHHHHHhcCCCcEEEEEeC
Q 028002 135 RKGWPEFAPYDAIHVGAAAP------------EIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~------------~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
....++ +..|+|+|+..-. .+++.+.+.|+|||-+++=+-
T Consensus 125 v~~l~~-~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl 176 (257)
T d2p41a1 125 VFFIPP-ERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 176 (257)
T ss_dssp TTTSCC-CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred HHhcCC-CcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEEC
Confidence 333333 7899999996431 133456789999999888543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.83 E-value=2.4e-05 Score=55.19 Aligned_cols=95 Identities=21% Similarity=0.198 Sum_probs=68.3
Q ss_pred CCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC------
Q 028002 66 LKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG------ 137 (215)
Q Consensus 66 ~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~------ 137 (215)
++++.+||-+|+ |. |..+..+++..+. .+|+++|.++...+.+++. +. + .++..+..+.
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~~----Ga------~--~~i~~~~~~~~~~~~~ 91 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRA----GA------D--YVINASMQDPLAEIRR 91 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHH----TC------S--EEEETTTSCHHHHHHH
T ss_pred CCCCCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHHc----CC------c--eeeccCCcCHHHHHHH
Confidence 888999999996 53 7777778887654 6899999999988888752 21 1 2222221111
Q ss_pred CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 ~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......||+|+....-....+.+.+.++|||.+++.
T Consensus 92 ~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 92 ITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp HTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEEC
T ss_pred HhhcccchhhhcccccchHHHhhhhhcccCCEEEEe
Confidence 012256999998887777778889999999999875
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.77 E-value=4.2e-05 Score=53.61 Aligned_cols=94 Identities=21% Similarity=0.188 Sum_probs=65.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---- 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---- 139 (215)
.++++.+||-.|+|+ |..+..+++..| .++++++.++..++.+++ .+. + .++. .......
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~~~r~~~~k~----~Ga------~--~~~~-~~~~~~~~~~~ 88 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKE----LGA------D--LVVN-PLKEDAAKFMK 88 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH----TTC------S--EEEC-TTTSCHHHHHH
T ss_pred CCCCCCEEEEeecccchhhhhHHHhcCC--CeEeccCCCHHHhhhhhh----cCc------c--eecc-cccchhhhhcc
Confidence 488999999999998 788888888865 579999999999888765 222 1 1111 1111100
Q ss_pred -CCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 140 -EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 -~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
....+|.++.+.......+...+.|+++|.+++.
T Consensus 89 ~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 89 EKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp HHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEEC
T ss_pred cccCCCceEEeecCCHHHHHHHHHHhccCCceEec
Confidence 0123455555666667788999999999999885
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.74 E-value=0.00015 Score=51.09 Aligned_cols=97 Identities=16% Similarity=0.125 Sum_probs=70.2
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC-CCCCC----
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-GRKGW---- 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d-~~~~~---- 138 (215)
.++++.+||-.|||. |.++..+++..|. ..|+++|.++...+.+++. +.. .++... ..+..
T Consensus 25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~l----Ga~--------~~i~~~~~~~~~~~~~ 91 (176)
T d2fzwa2 25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEF----GAT--------ECINPQDFSKPIQEVL 91 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHH----TCS--------EEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEecchhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHh----CCc--------EEEeCCchhhHHHHHH
Confidence 388999999999986 7788888888765 6899999999998888752 221 222111 11100
Q ss_pred --CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 139 --PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 139 --~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
...+.+|+|+.........+.+..++++||.+++..
T Consensus 92 ~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 92 IEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp HHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred HHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEE
Confidence 122579999998888888889999999998776643
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.71 E-value=0.00012 Score=51.97 Aligned_cols=96 Identities=16% Similarity=0.087 Sum_probs=66.2
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC-CCCCC-----
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKG----- 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~-d~~~~----- 137 (215)
.++++.+|+-+|||. |..+..+++..|. .+|+++|.+++.++.|++. +. -.++.. +....
T Consensus 26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~----GA--------~~~in~~~~~~~~~~~~ 92 (176)
T d1d1ta2 26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAV----GA--------TECISPKDSTKPISEVL 92 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHH----TC--------SEEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhc----CC--------cEEECccccchHHHHHH
Confidence 378899999999997 7788888888764 6899999999999999864 21 112211 11110
Q ss_pred -CCCCCCccEEEEccCCCCchHHHHHhc-CCCcEEEEE
Q 028002 138 -WPEFAPYDAIHVGAAAPEIPQALIDQL-KPGGRMVIP 173 (215)
Q Consensus 138 -~~~~~~~D~V~~~~~~~~~~~~~~~~L-k~gG~lv~~ 173 (215)
......+|+++...............+ +.+|.+++.
T Consensus 93 ~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~v 130 (176)
T d1d1ta2 93 SEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVV 130 (176)
T ss_dssp HHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEEC
T ss_pred HHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEE
Confidence 012257999988877766666555555 555888875
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=6.7e-05 Score=53.01 Aligned_cols=94 Identities=21% Similarity=0.162 Sum_probs=65.6
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---C--
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---G-- 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~-- 137 (215)
+++++.+||-.|+ | .|..+..+++..| .++++++.+++..+.+++ .+. + .++...-.+ .
T Consensus 25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga------~--~vi~~~~~~~~~~i~ 90 (174)
T d1yb5a2 25 CVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQ----NGA------H--EVFNHREVNYIDKIK 90 (174)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH----TTC------S--EEEETTSTTHHHHHH
T ss_pred CCCCCCEEEEEeccccccccccccccccC--cccccccccccccccccc----cCc------c--cccccccccHHHHhh
Confidence 4788999999996 4 4888889999876 689999888887777654 332 1 122111111 0
Q ss_pred -CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 -~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+.... ....+...+.|+|+|.++..
T Consensus 91 ~~t~~~g~d~v~d~~g-~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 91 KYVGEKGIDIIIEMLA-NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HHHCTTCEEEEEESCH-HHHHHHHHHHEEEEEEEEEC
T ss_pred hhhccCCceEEeeccc-HHHHHHHHhccCCCCEEEEE
Confidence 112357999998766 35677889999999999874
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.55 E-value=0.00014 Score=54.25 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 114 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 114 (215)
+..++++.. ..+|..|||..||+|..+.++.+.. .+.+|+|+++..++.|+++++
T Consensus 201 L~~~lI~~~---s~~gd~VlDpF~GSGTT~~aa~~~~---R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 201 LIERIIRAS---SNPNDLVLDCFMGSGTTAIVAKKLG---RNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHH---CCTTCEEEESSCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCCCEEEECCCCchHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHc
Confidence 455666554 5788999999999999998877763 899999999999999999875
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=97.46 E-value=0.00054 Score=48.14 Aligned_cols=96 Identities=16% Similarity=0.081 Sum_probs=66.9
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEe-CCCCCCC----
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGW---- 138 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~---- 138 (215)
.++++.+||-+|+|. |.....+++..+. .+|+++|.++...+.+++. +. ...+. .+..+..
T Consensus 25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~-~~Vi~~~~~~~k~~~a~~~----Ga--------~~~i~~~~~~~~~~~~~ 91 (176)
T d2jhfa2 25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGA-ARIIGVDINKDKFAKAKEV----GA--------TECVNPQDYKKPIQEVL 91 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHT----TC--------SEEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHcCC-ceEEeecCcHHHHHHHHHh----CC--------eeEEecCCchhHHHHHH
Confidence 389999999999986 5566677777654 7999999999999988753 21 12221 1111110
Q ss_pred --CCCCCccEEEEccCCCCchHHHHHhcCCC-cEEEEE
Q 028002 139 --PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIP 173 (215)
Q Consensus 139 --~~~~~~D~V~~~~~~~~~~~~~~~~Lk~g-G~lv~~ 173 (215)
...+.+|+|+.........+.+...++++ |.+++.
T Consensus 92 ~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 92 TEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp HHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEEC
T ss_pred HHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEe
Confidence 12257999999988888888888888887 455543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.42 E-value=0.00017 Score=50.31 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=66.0
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
..+|+-+|+|. |..+...++.+| .+|+.+|.+.+.++..+..+.. +++....+-..........|+|
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~~~~l~~l~~~~~~----------~~~~~~~~~~~l~~~~~~aDiv 99 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS----------RVELLYSNSAEIETAVAEADLL 99 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG----------GSEEEECCHHHHHHHHHTCSEE
T ss_pred CcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCcHHHHHHHHHhhcc----------cceeehhhhhhHHHhhccCcEE
Confidence 47999999998 888888898887 7999999999998877665432 4444443322111111358999
Q ss_pred EEccCC-----CC-chHHHHHhcCCCcEEEE
Q 028002 148 HVGAAA-----PE-IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 148 ~~~~~~-----~~-~~~~~~~~Lk~gG~lv~ 172 (215)
+...-. +. +-++..+.+|||.+++=
T Consensus 100 I~aalipG~~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 100 IGAVLVPGRRAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp EECCCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred EEeeecCCcccCeeecHHHHhhcCCCcEEEE
Confidence 887644 23 33789999999998874
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.35 E-value=6.8e-05 Score=52.90 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=63.8
Q ss_pred cCCCCCEEEEEcC-Cc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCC
Q 028002 65 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA 142 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 142 (215)
+++++++||-.|+ |. |..+..+++..| .++++++.++...+.+++ .+.. .+ +...+.........
T Consensus 24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~~----lGa~------~~-i~~~~~~~~~~~~~ 90 (171)
T d1iz0a2 24 QARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPLA----LGAE------EA-ATYAEVPERAKAWG 90 (171)
T ss_dssp TCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHHH----TTCS------EE-EEGGGHHHHHHHTT
T ss_pred CCCCCCEEEEEeccccchhhhhhhhcccc--cccccccccccccccccc----cccc------ee-eehhhhhhhhhccc
Confidence 4789999999985 54 788888999876 689999998887777654 3321 11 11111111111225
Q ss_pred CccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 143 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 143 ~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.+|+|+.... ...+...++|+++|.++..
T Consensus 91 g~D~v~d~~G--~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 91 GLDLVLEVRG--KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp SEEEEEECSC--TTHHHHHTTEEEEEEEEEC
T ss_pred cccccccccc--hhHHHHHHHHhcCCcEEEE
Confidence 6999987544 3467888999999999874
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.33 E-value=0.00044 Score=52.04 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 115 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 115 (215)
+..+++... ..++..|||..||+|..+.+..+.. .+.+|+|+++...+.|++++..
T Consensus 196 L~~~~I~~~---s~~gdiVLDpF~GSGTT~~Aa~~lg---R~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 196 VIERLVRAL---SHPGSTVLDFFAGSGVTARVAIQEG---RNSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp HHHHHHHHH---SCTTCEEEETTCTTCHHHHHHHHHT---CEEEEEESSTHHHHHHHHHHHH
T ss_pred HHHHHHHhh---cCCCCEEEecCCCCcHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHH
Confidence 455666654 6789999999999999988888773 8999999999999999999875
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=97.28 E-value=0.00023 Score=54.60 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh
Q 028002 54 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 115 (215)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 115 (215)
+..+++... ..+++.|||..||+|..+.++... | .+.+|+|+++..++.|++++.+
T Consensus 239 L~~rlI~~~---s~~gdiVlDpF~GSGTT~~AA~~l-g--R~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 239 LPEFFIRML---TEPDDLVVDIFGGSNTTGLVAERE-S--RKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHH---CCTTCEEEETTCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHhhhhc---ccCCCEEEecCCCCcHHHHHHHHc-C--CcEEEEeCCHHHHHHHHHHHHh
Confidence 566666654 678999999999999998888776 3 8999999999999999887654
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=97.26 E-value=0.0009 Score=46.86 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=64.1
Q ss_pred cCCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----
Q 028002 65 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---- 139 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---- 139 (215)
.++++.+|+-+|+|. |..+..+++..+. .+|+++|.++..++.+++ .+.. .++...-.+...
T Consensus 25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~-~~Vi~~~~~~~rl~~a~~----~GAd--------~~in~~~~~~~~~~~~ 91 (175)
T d1cdoa2 25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGA-KRIIAVDLNPDKFEKAKV----FGAT--------DFVNPNDHSEPISQVL 91 (175)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH----TTCC--------EEECGGGCSSCHHHHH
T ss_pred CCCCCCEEEEEecCCccchHHHHHHHHhh-chheeecchHHHHHHHHH----cCCc--------EEEcCCCcchhHHHHH
Confidence 488999999999998 5555566666544 789999999999888875 2221 222211111110
Q ss_pred ---CCCCccEEEEccCCCCchHHHHHhcCCCcEEEE
Q 028002 140 ---EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 140 ---~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~ 172 (215)
....+|+|+...........+..++++||..++
T Consensus 92 ~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 92 SKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp HHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEE
T ss_pred HhhccCCcceeeeecCCHHHHHHHHHHhhCCCccee
Confidence 124699999888887777888888777654444
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.00094 Score=46.90 Aligned_cols=94 Identities=17% Similarity=0.127 Sum_probs=66.3
Q ss_pred cCCCCCEEEEEcCCc--cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeC---CCCCC--
Q 028002 65 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRKG-- 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~---d~~~~-- 137 (215)
.++++.+||-.|+|. |..+..+++..| .+|++++.++...+.+++. +. + .++.. |+.+.
T Consensus 25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~~l----Ga------~--~vi~~~~~d~~~~v~ 90 (179)
T d1qora2 25 EIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALKA----GA------W--QVINYREEDLVERLK 90 (179)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHHH----TC------S--EEEETTTSCHHHHHH
T ss_pred CCCCCCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHHhc----CC------e--EEEECCCCCHHHHHH
Confidence 378899999996665 788888899876 6899999999998888652 32 1 22221 11111
Q ss_pred -CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 -~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+.... ....+.....++++|.+++.
T Consensus 91 ~~t~g~g~d~v~d~~g-~~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 91 EITGGKKVRVVYDSVG-RDTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp HHTTTCCEEEEEECSC-GGGHHHHHHTEEEEEEEEEC
T ss_pred HHhCCCCeEEEEeCcc-HHHHHHHHHHHhcCCeeeec
Confidence 112357898887765 45678899999999988774
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.15 E-value=0.00078 Score=47.48 Aligned_cols=94 Identities=21% Similarity=0.190 Sum_probs=64.4
Q ss_pred cCCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---C--
Q 028002 65 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---G-- 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~-- 137 (215)
+++++.+||-.|. | .|..+..+++..| .+++++..+++..+.+++ .+. + .++...-.+ .
T Consensus 22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g--~~vi~~~~~~~~~~~l~~----~Ga------~--~vi~~~~~~~~~~v~ 87 (183)
T d1pqwa_ 22 RLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLSR----LGV------E--YVGDSRSVDFADEIL 87 (183)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHT----TCC------S--EEEETTCSTHHHHHH
T ss_pred CCCCCCEEEEECCCCCcccccchhhcccc--ccceeeeccccccccccc----ccc------c--ccccCCccCHHHHHH
Confidence 3788999999874 4 3889999999886 678888878877776653 332 1 222211111 1
Q ss_pred -CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 -~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+....- ...+.+.++|+++|+++..
T Consensus 88 ~~t~~~g~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 88 ELTDGYGVDVVLNSLAG-EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HHTTTCCEEEEEECCCT-HHHHHHHHTEEEEEEEEEC
T ss_pred HHhCCCCEEEEEecccc-hHHHHHHHHhcCCCEEEEE
Confidence 0122579999987764 5678889999999999884
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.11 E-value=0.00083 Score=47.47 Aligned_cols=94 Identities=18% Similarity=0.157 Sum_probs=66.4
Q ss_pred cCCCCCEEEEEcCCc--cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC-----
Q 028002 65 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----- 137 (215)
Q Consensus 65 ~~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~----- 137 (215)
+++++++||-.|++. |..+..+++..| .+++++..+++..+.+++. +. + .++..+-...
T Consensus 26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~----Ga------~--~vi~~~~~~~~~~~~ 91 (182)
T d1v3va2 26 GVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQI----GF------D--AAFNYKTVNSLEEAL 91 (182)
T ss_dssp CCCSSCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHT----TC------S--EEEETTSCSCHHHHH
T ss_pred CCCCCCEEEEEeCCCchhHHHHHHHHccC--CEEEEeCCCHHHHHHHHhh----hh------h--hhcccccccHHHHHH
Confidence 478899999988865 678888899876 6899999998887776642 22 1 2222211111
Q ss_pred -CCCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 138 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 138 -~~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
......+|+|+.... ....+...+.|+++|.++..
T Consensus 92 ~~~~~~Gvd~v~D~vG-~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 92 KKASPDGYDCYFDNVG-GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp HHHCTTCEEEEEESSC-HHHHHHHGGGEEEEEEEEEC
T ss_pred HHhhcCCCceeEEecC-chhhhhhhhhccCCCeEEee
Confidence 112257999988765 45678899999999999874
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.80 E-value=0.0013 Score=46.33 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=60.6
Q ss_pred CCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC---CCCC----
Q 028002 69 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE---- 140 (215)
Q Consensus 69 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~---- 140 (215)
..+|+-||+|. |..+...+..+| .+|+.+|.++..++..+.....+-..........+-..+.... .+..
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 46999999998 888888888886 7999999999988877654322100000000000000000000 0000
Q ss_pred -----CCCccEEEEccCCC-----C-chHHHHHhcCCCcEEEE
Q 028002 141 -----FAPYDAIHVGAAAP-----E-IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 141 -----~~~~D~V~~~~~~~-----~-~~~~~~~~Lk~gG~lv~ 172 (215)
....|+|+...-.+ . +-+++.+.+|||.+++=
T Consensus 107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVD 149 (183)
T d1l7da1 107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID 149 (183)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEE
Confidence 13579998876543 2 34789999999998874
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.72 E-value=0.0026 Score=44.71 Aligned_cols=97 Identities=9% Similarity=-0.056 Sum_probs=64.5
Q ss_pred CCCCCEEEEEcCCc--cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCC--CCCCC
Q 028002 66 LKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GWPEF 141 (215)
Q Consensus 66 ~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~ 141 (215)
.+++.+||-.|++. |..+..+++..| .+|+++-.+++..+.+++ .+.. .+.-...+..+ .....
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~G--a~Viat~~s~~k~~~~~~----lGa~------~vi~~~~~~~~~~~~~~~ 96 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKRG--YTVEASTGKAAEHDYLRV----LGAK------EVLAREDVMAERIRPLDK 96 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCTTCHHHHHH----TTCS------EEEECC---------CCS
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHcC--CceEEecCchHHHHHHHh----cccc------eeeecchhHHHHHHHhhc
Confidence 55678999998654 788889998876 689999988888887764 2322 11111111111 11133
Q ss_pred CCccEEEEccCCCCchHHHHHhcCCCcEEEEEeC
Q 028002 142 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 142 ~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
+.+|+|+..-. ....+...+.|++||+++...+
T Consensus 97 ~gvD~vid~vg-g~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 97 QRWAAAVDPVG-GRTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp CCEEEEEECST-TTTHHHHHHTEEEEEEEEECSC
T ss_pred cCcCEEEEcCC-chhHHHHHHHhCCCceEEEeec
Confidence 68998887654 4568889999999999998543
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.38 E-value=0.0026 Score=47.23 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=57.8
Q ss_pred CCCCEEEEEcCCccHHHHHHHHHhCC---------------------------------------CCeEEEEecChHHHH
Q 028002 67 KPGMHALDIGSGTGYLTACFALMVGP---------------------------------------QGRAVGVEHIPELVV 107 (215)
Q Consensus 67 ~~~~~vLdiG~G~G~~~~~l~~~~~~---------------------------------------~~~v~~~D~s~~~~~ 107 (215)
..+..++|-.||+|.+.+.++-.... ...++|.|+++.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 44567999999999988876542100 024678888888888
Q ss_pred HHH---HHHHhhcccCcccCCCeEEEeCCCCCCCC-----CCCCccEEEEccCC
Q 028002 108 SSI---QNIEKSAAAPLLKEGSLSVHVGDGRKGWP-----EFAPYDAIHVGAAA 153 (215)
Q Consensus 108 ~a~---~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~D~V~~~~~~ 153 (215)
.|+ +++...++. ..+.+...|+.+..+ .....++|+++++.
T Consensus 129 ~A~~~r~n~~~Agl~-----~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPY 177 (249)
T d1o9ga_ 129 AARRLRERLTAEGGA-----LPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPY 177 (249)
T ss_dssp HHHHHHHHHHHTTSS-----CCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCG
T ss_pred HHHHHHHHHHHcCCC-----ceeeeeecchhccCcchhccCCCCCCEEEeCCCc
Confidence 874 567666655 688999998865322 22567999999975
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.21 E-value=0.021 Score=43.27 Aligned_cols=92 Identities=24% Similarity=0.140 Sum_probs=64.0
Q ss_pred CEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccEEE
Q 028002 70 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAIH 148 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~V~ 148 (215)
++|+|+.||.|.++..+... |- ..+.++|+++.+.+.-+.++ .-.+..+|+.+... .....|+++
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G~-~~~~a~e~d~~a~~~~~~N~------------~~~~~~~Di~~~~~~~~~~~dll~ 66 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-GF-RIICANEYDKSIWKTYESNH------------SAKLIKGDISKISSDEFPKCDGII 66 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-TC-EEEEEEECCHHHHHHHHHHC------------CSEEEESCTTTSCGGGSCCCSEEE
T ss_pred CeEEEeCcCcCHHHHHHHHC-CC-EEEEEEeCCHHHHHHHHHHC------------CCCCccCChhhCCHhHcccccEEe
Confidence 47999999999999888776 54 45779999998877666553 23456788776533 224689999
Q ss_pred EccCCCCch-------------------HHHHHhcCCCcEEEEEeC
Q 028002 149 VGAAAPEIP-------------------QALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 149 ~~~~~~~~~-------------------~~~~~~Lk~gG~lv~~~~ 175 (215)
...+++.+- -++.+.++|.-+++=.++
T Consensus 67 ~g~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~ 112 (324)
T d1dcta_ 67 GGPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVK 112 (324)
T ss_dssp ECCCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred ecccccccccccccccccccccchHHHHHHHHHhhCCceeeccccc
Confidence 988774322 135677888755554443
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.00 E-value=0.022 Score=39.94 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=59.6
Q ss_pred CCCC--CEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---
Q 028002 66 LKPG--MHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--- 138 (215)
Q Consensus 66 ~~~~--~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--- 138 (215)
++++ .+||-.|+ | .|..+..+++.+|. ..++++..+++......+. .+. + .++...-.+..
T Consensus 26 ~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga-~~vi~~~~~~e~~~~l~~~---~ga------d--~vi~~~~~~~~~~~ 93 (187)
T d1vj1a2 26 ISAGSNQTMVVSGAAGACGSLAGQIGHLLGC-SRVVGICGTQEKCLFLTSE---LGF------D--AAVNYKTGNVAEQL 93 (187)
T ss_dssp CCTTSCCEEEESSTTSTTGGGHHHHHHHTTC-SEEEEEESSHHHHHHHHHH---SCC------S--EEEETTSSCHHHHH
T ss_pred CCCCCCCEEEEECCCchhhHHHHHHHHHcCC-cceecccchHHHHhhhhhc---ccc------e--EEeeccchhHHHHH
Confidence 5655 78999883 4 49999999998865 4677777666554443322 221 1 12222111100
Q ss_pred --CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 --PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 --~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
...+.+|+|+.... ....+...+.|+++|+++..
T Consensus 94 ~~~~~~GvDvv~D~vG-g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 94 REACPGGVDVYFDNVG-GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp HHHCTTCEEEEEESSC-HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHhccCceEEEecCC-chhHHHHhhhccccccEEEe
Confidence 01256999987765 35567889999999999863
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=95.84 E-value=0.0035 Score=44.39 Aligned_cols=100 Identities=11% Similarity=0.090 Sum_probs=58.8
Q ss_pred cCCCCCEEEEE--cCC-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEE-eCCCCCCC--
Q 028002 65 NLKPGMHALDI--GSG-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH-VGDGRKGW-- 138 (215)
Q Consensus 65 ~~~~~~~vLdi--G~G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~-~~d~~~~~-- 138 (215)
.++++.+||-+ |+| .|..+..+++..| .+++++-.++...+...+.+++.+.+ .+-.. ..+..+..
T Consensus 25 ~~~~g~~vli~~ga~g~vG~~aiqlAk~~G--a~vI~~v~~~~~~~~~~~~~~~lGad------~vi~~~~~~~~~~~~~ 96 (189)
T d1gu7a2 25 KLTPGKDWFIQNGGTSAVGKYASQIGKLLN--FNSISVIRDRPNLDEVVASLKELGAT------QVITEDQNNSREFGPT 96 (189)
T ss_dssp CCCTTTCEEEESCTTSHHHHHHHHHHHHHT--CEEEEEECCCTTHHHHHHHHHHHTCS------EEEEHHHHHCGGGHHH
T ss_pred CCCCCCEEEEEeCCCchHHHHHHHHHhhcC--CeEEEEEecccccchHHhhhhhcccc------EEEeccccchhHHHHH
Confidence 36788888777 333 3678888899886 57777654544444444455555432 11111 11111100
Q ss_pred ------CCCCCccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 139 ------PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 139 ------~~~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
.....+|+|+..-. ........+.|+++|.++..
T Consensus 97 v~~~~~~~g~~vdvv~D~vg-~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 97 IKEWIKQSGGEAKLALNCVG-GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHHHHHTCCEEEEEESSC-HHHHHHHHHTSCTTCEEEEC
T ss_pred HHHHHhhccCCceEEEECCC-cchhhhhhhhhcCCcEEEEE
Confidence 01246888886544 34557788999999998864
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.62 E-value=0.021 Score=39.25 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=53.6
Q ss_pred EEEEEcCCc-c-HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028002 71 HALDIGSGT-G-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 71 ~vLdiG~G~-G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
+|+-+|||. | +++..+.+. +...+|+++|.++..++.+++. + .+.....+.... .....|+|+
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~~~~~~a~~~----~--------~~~~~~~~~~~~--~~~~~dlIi 67 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDL----G--------IIDEGTTSIAKV--EDFSPDFVM 67 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHT----T--------SCSEEESCGGGG--GGTCCSEEE
T ss_pred EEEEEccCHHHHHHHHHHHhc-CCCeEEEEEECChHHHHHHHHh----h--------cchhhhhhhhhh--hcccccccc
Confidence 588899997 4 455555554 5557899999999999888753 1 122222221111 113579998
Q ss_pred EccCCCC---chHHHHHhcCCCcEEEE
Q 028002 149 VGAAAPE---IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 149 ~~~~~~~---~~~~~~~~Lk~gG~lv~ 172 (215)
...+... +++++...++++..++-
T Consensus 68 la~p~~~~~~vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 68 LSSPVRTFREIAKKLSYILSEDATVTD 94 (171)
T ss_dssp ECSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred ccCCchhhhhhhhhhhccccccccccc
Confidence 8777543 44567777877655543
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=95.58 E-value=0.01 Score=41.07 Aligned_cols=95 Identities=14% Similarity=0.059 Sum_probs=62.7
Q ss_pred CCCCCEEEEEcC-C-ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC-CCC--CCC
Q 028002 66 LKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-RKG--WPE 140 (215)
Q Consensus 66 ~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~-~~~--~~~ 140 (215)
.+++.+||--|+ | .|..+..+++.+| .+|+++..+++..+.+++ .+. +.+ +...+. ... ...
T Consensus 21 ~~~~~~VLV~gaaGgVG~~avQlAk~~G--a~Viat~~s~~k~~~~~~----lGa------d~v-i~~~~~~~~~~~~~~ 87 (167)
T d1tt7a2 21 SPEKGSVLVTGATGGVGGIAVSMLNKRG--YDVVASTGNREAADYLKQ----LGA------SEV-ISREDVYDGTLKALS 87 (167)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHT--CCEEEEESSSSTHHHHHH----HTC------SEE-EEHHHHCSSCCCSSC
T ss_pred CCCCCEEEEeCCcchHHHHHHHHHHHcC--CceEEEecCHHHHHHHHh----hcc------cce-Eeccchhchhhhccc
Confidence 344667888774 3 3789999999987 689999998887777654 232 122 111111 111 112
Q ss_pred CCCccEEEEccCCCCchHHHHHhcCCCcEEEEEe
Q 028002 141 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 174 (215)
Q Consensus 141 ~~~~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~ 174 (215)
.+.+|+|+..-. ....+...+.|+++|++++.-
T Consensus 88 ~~gvd~vid~vg-g~~~~~~~~~l~~~G~iv~~G 120 (167)
T d1tt7a2 88 KQQWQGAVDPVG-GKQLASLLSKIQYGGSVAVSG 120 (167)
T ss_dssp CCCEEEEEESCC-THHHHHHHTTEEEEEEEEECC
T ss_pred CCCceEEEecCc-HHHHHHHHHHhccCceEEEee
Confidence 357998876654 456688999999999998853
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.45 E-value=0.028 Score=42.76 Aligned_cols=72 Identities=15% Similarity=0.083 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-CCCCccE
Q 028002 68 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~ 146 (215)
.+.+|||+.||.|.++..+.+. |- .-+.++|+++.+++.-+.++.. ...+|+.+... ....+|+
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G~-~~v~a~e~d~~a~~~~~~N~~~-------------~~~~Di~~~~~~~~~~~Dl 74 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-GA-ECVYSNEWDKYAQEVYEMNFGE-------------KPEGDITQVNEKTIPDHDI 74 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TC-EEEEEECCCHHHHHHHHHHHSC-------------CCBSCGGGSCGGGSCCCSE
T ss_pred CCCeEEEECccccHHHHHHHHC-CC-eEEEEEeCCHHHHHHHHHHCCC-------------CCcCchhcCchhhcceeee
Confidence 4689999999999999988766 54 4577899999998887776532 11355554322 1246899
Q ss_pred EEEccCCC
Q 028002 147 IHVGAAAP 154 (215)
Q Consensus 147 V~~~~~~~ 154 (215)
++...+++
T Consensus 75 l~ggpPCq 82 (327)
T d2c7pa1 75 LCAGFPCQ 82 (327)
T ss_dssp EEEECCCT
T ss_pred eecccccc
Confidence 99888764
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=95.36 E-value=0.044 Score=42.68 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=44.1
Q ss_pred cccC-CcccchhHHHHHHHH--------HHHh-cCCCCCEEEEEcCCccHHHHHHHHHhCC------CCeEEEEecChHH
Q 028002 42 AIGY-NATISAPHMHATCLQ--------LLEE-NLKPGMHALDIGSGTGYLTACFALMVGP------QGRAVGVEHIPEL 105 (215)
Q Consensus 42 ~~~~-~~~~~~~~~~~~~l~--------~l~~-~~~~~~~vLdiG~G~G~~~~~l~~~~~~------~~~v~~~D~s~~~ 105 (215)
++|. |.++++|.+...+-+ .+.. ...+..+|+|+|+|+|.++..+++.+.. ..+++.+|.|+..
T Consensus 43 ~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L 122 (365)
T d1zkda1 43 PLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 122 (365)
T ss_dssp -------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred CCCCCCCeECCCchHHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhH
Confidence 4554 456788874332222 2211 1223458999999999999888776531 2479999999987
Q ss_pred HHHHHHHHH
Q 028002 106 VVSSIQNIE 114 (215)
Q Consensus 106 ~~~a~~~~~ 114 (215)
.+.-++++.
T Consensus 123 ~~~Q~~~l~ 131 (365)
T d1zkda1 123 RQKQQTLLA 131 (365)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHHhc
Confidence 776665544
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.11 E-value=0.012 Score=45.15 Aligned_cols=75 Identities=11% Similarity=-0.005 Sum_probs=50.3
Q ss_pred CCEEEEEcCCccHHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCC---CCCc
Q 028002 69 GMHALDIGSGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE---FAPY 144 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~ 144 (215)
..+|+|+.||.|.++..+... |-.. -+.++|+++.+++.-+.++ +...+..+|+.+.... ...+
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~-----------~~~~~~~~di~~~~~~~~~~~~~ 69 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF-----------PHTQLLAKTIEGITLEEFDRLSF 69 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC-----------TTSCEECSCGGGCCHHHHHHHCC
T ss_pred CCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC-----------CCCCcccCchhhCCHhHcCCCCc
Confidence 368999999999999888665 4332 3678999998887766553 2334555666543321 1368
Q ss_pred cEEEEccCCCC
Q 028002 145 DAIHVGAAAPE 155 (215)
Q Consensus 145 D~V~~~~~~~~ 155 (215)
|+++...+++.
T Consensus 70 Dll~ggpPCq~ 80 (343)
T d1g55a_ 70 DMILMSPPCQP 80 (343)
T ss_dssp SEEEECCC---
T ss_pred cEEEeeccccc
Confidence 99998887743
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.90 E-value=0.012 Score=41.08 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=58.4
Q ss_pred CCEEEEEcCC--ccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCC---CCCCCCCCCC
Q 028002 69 GMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD---GRKGWPEFAP 143 (215)
Q Consensus 69 ~~~vLdiG~G--~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~ 143 (215)
+.+||-.|+. .|..+..+++.+| .+|+++..+++..+.+++ .+.+ .++..+ ..... ....
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~G--a~Via~~~~~~k~~~~~~----lGad--------~vi~~~~~~~~~~l-~~~~ 96 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLG--YQVVAVSGRESTHEYLKS----LGAS--------RVLPRDEFAESRPL-EKQV 96 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHH----HTEE--------EEEEGGGSSSCCSS-CCCC
T ss_pred CCcEEEEEccccchHHHHHHHHHcC--CCeEEEecchhHHHHHHh----hccc--------cccccccHHHHHHH-Hhhc
Confidence 3477766543 3788889999986 689999989888777654 2221 122211 11111 2256
Q ss_pred ccEEEEccCCCCchHHHHHhcCCCcEEEEE
Q 028002 144 YDAIHVGAAAPEIPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~ 173 (215)
+|.|+ +...........+.|+++|+++..
T Consensus 97 ~~~vv-D~Vgg~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 97 WAGAI-DTVGDKVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp EEEEE-ESSCHHHHHHHHHTEEEEEEEEEC
T ss_pred CCeeE-EEcchHHHHHHHHHhccccceEee
Confidence 78775 445556778899999999999885
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.85 E-value=0.046 Score=37.25 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=50.0
Q ss_pred CEEEEEcCCc-c-HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 70 MHALDIGSGT-G-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 70 ~~vLdiG~G~-G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
++|.-||+|. | .++..+.+. | .+|+++|.++..++.+++. + .++....+. +. ....|+|
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~-g--~~V~~~d~~~~~~~~a~~~----~--------~~~~~~~~~-~~---~~~~DiI 61 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR-G--HYLIGVSRQQSTCEKAVER----Q--------LVDEAGQDL-SL---LQTAKII 61 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T--CEEEEECSCHHHHHHHHHT----T--------SCSEEESCG-GG---GTTCSEE
T ss_pred CEEEEEeecHHHHHHHHHHHHC-C--CEEEEEECCchHHHHHHHh----h--------ccceeeeec-cc---ccccccc
Confidence 4678889986 4 445555544 3 6899999999887776542 1 111111111 11 1468999
Q ss_pred EEccCCC---CchHHHHHhcCCCcEEEE
Q 028002 148 HVGAAAP---EIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 148 ~~~~~~~---~~~~~~~~~Lk~gG~lv~ 172 (215)
+...+.. .+.+++...++++-.++-
T Consensus 62 ilavp~~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 62 FLCTPIQLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp EECSCHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred cccCcHhhhhhhhhhhhhhcccccceee
Confidence 8766543 344566666777665543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.62 E-value=0.11 Score=38.20 Aligned_cols=78 Identities=15% Similarity=0.091 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC------
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~------ 138 (215)
+++.+|-.|++.|. .+..+++. | .+|+.++.++..++.+.+.+...+.. .++.++.+|+.+.-
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~-G--~~Vv~~~r~~~~l~~~~~~l~~~~~~-----~~~~~~~~Dls~~~~v~~~v 80 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQ-G--LKVVGCARTVGNIEELAAECKSAGYP-----GTLIPYRCDLSNEEDILSMF 80 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTTCS-----SEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcCCC-----ceEEEEEccCCCHHHHHHHH
Confidence 36789999988763 33334443 3 78999999999999888877765432 46788899987621
Q ss_pred ----CCCCCccEEEEccCC
Q 028002 139 ----PEFAPYDAIHVGAAA 153 (215)
Q Consensus 139 ----~~~~~~D~V~~~~~~ 153 (215)
...+..|+++.+...
T Consensus 81 ~~~~~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 81 SAIRSQHSGVDICINNAGL 99 (257)
T ss_dssp HHHHHHHCCCSEEEECCCC
T ss_pred HHHHHhcCCCCEEEecccc
Confidence 112678988877643
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.48 E-value=0.036 Score=35.43 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecCh--HHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIP--ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.+.+||-+|.|. |.--...+...| .+++.++... .....+ .. .++++.......... ..+
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~g--a~v~v~~~~~~~~~~~~~----~~---------~~i~~~~~~~~~~dl--~~~ 73 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAG--ARLTVNALTFIPQFTVWA----NE---------GMLTLVEGPFDETLL--DSC 73 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTT--BEEEEEESSCCHHHHHHH----TT---------TSCEEEESSCCGGGG--TTC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCChHHHHHH----hc---------CCceeeccCCCHHHh--CCC
Confidence 468999999987 432222222223 5677765443 332222 11 467777766554322 468
Q ss_pred cEEEEccCCCCchHHHHHhcCCCcEEEEEeC
Q 028002 145 DAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 175 (215)
Q Consensus 145 D~V~~~~~~~~~~~~~~~~Lk~gG~lv~~~~ 175 (215)
++|+....-+.+-..+.+..++.|.++=...
T Consensus 74 ~lv~~at~d~~~n~~i~~~a~~~~ilVNv~D 104 (113)
T d1pjqa1 74 WLAIAATDDDTVNQRVSDAAESRRIFCNVVD 104 (113)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred cEEeecCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence 9999888887777888889999998875443
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.02 E-value=0.093 Score=40.67 Aligned_cols=84 Identities=8% Similarity=-0.085 Sum_probs=45.8
Q ss_pred CEEEEEcCCccHHHHHH-------H-HHh-------CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC
Q 028002 70 MHALDIGSGTGYLTACF-------A-LMV-------GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 134 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l-------~-~~~-------~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~ 134 (215)
.+|.|+||.+|..+..+ . +.. .+.-+|..-|.-.+-....-+.+...... ...--+.-+.+.+
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~--~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV--DGVCFINGVPGSF 130 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSC--TTCEEEEEEESCS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccC--CCCeEEEecCCch
Confidence 56999999999877421 1 110 12246777776665444433333221110 0000123345666
Q ss_pred CCCCCCCCCccEEEEccCCCC
Q 028002 135 RKGWPEFAPYDAIHVGAAAPE 155 (215)
Q Consensus 135 ~~~~~~~~~~D~V~~~~~~~~ 155 (215)
...+.+.++.+++++...+++
T Consensus 131 Y~rLfP~~Slh~~~Ss~alHW 151 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSYSLMW 151 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTB
T ss_pred hhhcCCCCceEEeeehhhhhh
Confidence 665556689999988876644
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.41 E-value=0.22 Score=32.30 Aligned_cols=87 Identities=14% Similarity=0.039 Sum_probs=52.4
Q ss_pred CEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCCCCc
Q 028002 70 MHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAPY 144 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~ 144 (215)
++|+-+|+|. .+..+++.+. .+..|+.+|.+++.++.+.+. ....++.+|..+.. .....+
T Consensus 1 M~IvI~G~G~--~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~------------~~~~vi~Gd~~~~~~l~~~~i~~a 66 (132)
T d1lssa_ 1 MYIIIAGIGR--VGYTLAKSLSEKGHDIVLIDIDKDICKKASAE------------IDALVINGDCTKIKTLEDAGIEDA 66 (132)
T ss_dssp CEEEEECCSH--HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH------------CSSEEEESCTTSHHHHHHTTTTTC
T ss_pred CEEEEECCCH--HHHHHHHHHHHCCCCcceecCChhhhhhhhhh------------hhhhhccCcccchhhhhhcChhhh
Confidence 4688888754 4444443331 126899999999988876542 24578889887521 122568
Q ss_pred cEEEEccCCCCc---hHHHHHhcCCCcEE
Q 028002 145 DAIHVGAAAPEI---PQALIDQLKPGGRM 170 (215)
Q Consensus 145 D~V~~~~~~~~~---~~~~~~~Lk~gG~l 170 (215)
|.+++....... .....+.+.+.-.+
T Consensus 67 ~~vv~~t~~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 67 DMYIAVTGKEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHTTCCCEE
T ss_pred hhhcccCCcHHHHHHHHHHHHHcCCceEE
Confidence 888876554321 12344556666433
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=93.26 E-value=0.15 Score=40.07 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=42.8
Q ss_pred CCCCCEEEEEcCCccHHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHhhc
Q 028002 66 LKPGMHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSA 117 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~s~~~~~~a~~~~~~~~ 117 (215)
+.++..++|+|+-.|..+..+++.... ..+|+++|+++...+..++++..+.
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~ 262 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT 262 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence 456779999999999999888776532 3689999999999999999887654
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.56 E-value=0.13 Score=37.97 Aligned_cols=97 Identities=20% Similarity=0.164 Sum_probs=62.6
Q ss_pred CCEE-EEEcCCccHHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC------
Q 028002 69 GMHA-LDIGSGTGYLTACFALMVG--PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------ 139 (215)
Q Consensus 69 ~~~v-LdiG~G~G~~~~~l~~~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------ 139 (215)
|++| |--|++. .++..+++.+- ...+|+..+.+++.++.+.+.+...+ .++.++..|+.+...
T Consensus 2 g~rVAlVTGas~-GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~Dvs~~~sv~~~~~ 73 (275)
T d1wmaa1 2 GIHVALVTGGNK-GIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-------LSPRFHQLDIDDLQSIRALRD 73 (275)
T ss_dssp CCCEEEESSCSS-HHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT-------CCCEEEECCTTCHHHHHHHHH
T ss_pred CCeEEEECCCCC-HHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEEecCCHHHHHHHHH
Confidence 5566 4445444 44444433321 12689999999999998888887654 467888999876211
Q ss_pred ----CCCCccEEEEccCCCC-------------------------chHHHHHhcCCCcEEEEE
Q 028002 140 ----EFAPYDAIHVGAAAPE-------------------------IPQALIDQLKPGGRMVIP 173 (215)
Q Consensus 140 ----~~~~~D~V~~~~~~~~-------------------------~~~~~~~~Lk~gG~lv~~ 173 (215)
..+..|+++.+..... +.+.+...|+++|.++..
T Consensus 74 ~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni 136 (275)
T d1wmaa1 74 FLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 136 (275)
T ss_dssp HHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 1257999998875421 112456777888987764
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=91.30 E-value=1.2 Score=29.25 Aligned_cols=89 Identities=13% Similarity=0.167 Sum_probs=53.9
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 70 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 70 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
++|.=||||. |. +...+.+. ++ .+++..|.+++..+...+.. .+... .+... ....|+|
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~-~~-~~i~v~~r~~~~~~~l~~~~------------~~~~~-~~~~~----v~~~Div 61 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQ-GG-YRIYIANRGAEKRERLEKEL------------GVETS-ATLPE----LHSDDVL 61 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-CS-CEEEEECSSHHHHHHHHHHT------------CCEEE-SSCCC----CCTTSEE
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-CC-CcEEEEeCChhHHHHhhhhc------------ccccc-ccccc----ccccceE
Confidence 4677789987 43 44445555 44 68999999998776655431 22222 12211 1347988
Q ss_pred EEccCCCCchHHHHHhcCCCcEEEEEeCCCc
Q 028002 148 HVGAAAPEIPQALIDQLKPGGRMVIPVGNIF 178 (215)
Q Consensus 148 ~~~~~~~~~~~~~~~~Lk~gG~lv~~~~~~~ 178 (215)
+..-. +.....+.+-+++.+.+++++..+.
T Consensus 62 ~lavk-P~~~~~v~~~l~~~~~~viS~~ag~ 91 (152)
T d1yqga2 62 ILAVK-PQDMEAACKNIRTNGALVLSVAAGL 91 (152)
T ss_dssp EECSC-HHHHHHHHTTCCCTTCEEEECCTTC
T ss_pred EEecC-HHHHHHhHHHHhhcccEEeecccCC
Confidence 76543 3344556666777788888775543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=90.75 E-value=0.78 Score=33.17 Aligned_cols=78 Identities=21% Similarity=0.166 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--------
Q 028002 68 PGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------- 138 (215)
+++.+|-.|++.| ++..+++.+- ...+|+.++.++..++.+.+.+...+ .++..+.+|+.+..
T Consensus 9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g-------~~~~~~~~Dvt~~~~v~~~~~~ 80 (251)
T d2c07a1 9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG-------YESSGYAGDVSKKEEISEVINK 80 (251)
T ss_dssp SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT-------CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEccCCCHHHHHHHHHH
Confidence 4667788886655 5555655552 22699999999999988888776643 46788889987621
Q ss_pred --CCCCCccEEEEccCC
Q 028002 139 --PEFAPYDAIHVGAAA 153 (215)
Q Consensus 139 --~~~~~~D~V~~~~~~ 153 (215)
...+..|+++.+...
T Consensus 81 ~~~~~g~iDilvnnag~ 97 (251)
T d2c07a1 81 ILTEHKNVDILVNNAGI 97 (251)
T ss_dssp HHHHCSCCCEEEECCCC
T ss_pred HHHhcCCceeeeecccc
Confidence 122689988877643
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.40 E-value=0.79 Score=33.05 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=55.0
Q ss_pred CCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-------
Q 028002 69 GMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------- 138 (215)
Q Consensus 69 ~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~------- 138 (215)
|..+|--|++.|. ++..+++. | .+|+..|.+++.++...+.+...+ .++..+.+|..+..
T Consensus 7 Gkv~lITGas~GIG~~ia~~la~~-G--~~V~l~~r~~~~l~~~~~~~~~~~-------~~~~~~~~Dvs~~~~v~~~~~ 76 (244)
T d1yb1a_ 7 GEIVLITGAGHGIGRLTAYEFAKL-K--SKLVLWDINKHGLEETAAKCKGLG-------AKVHTFVVDCSNREDIYSSAK 76 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEeeCCCHHHHHHHHH
Confidence 6788888888863 44455555 3 789999999999988888877643 57888999988621
Q ss_pred ---CCCCCccEEEEccCC
Q 028002 139 ---PEFAPYDAIHVGAAA 153 (215)
Q Consensus 139 ---~~~~~~D~V~~~~~~ 153 (215)
...+..|+++.+...
T Consensus 77 ~i~~~~g~idilinnag~ 94 (244)
T d1yb1a_ 77 KVKAEIGDVSILVNNAGV 94 (244)
T ss_dssp HHHHHTCCCSEEEECCCC
T ss_pred HHHHHcCCCceeEeeccc
Confidence 123678998877754
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=90.18 E-value=0.89 Score=29.11 Aligned_cols=91 Identities=11% Similarity=0.027 Sum_probs=50.3
Q ss_pred EEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----CCCCcc
Q 028002 71 HALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EFAPYD 145 (215)
Q Consensus 71 ~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~~D 145 (215)
+++-+|+|. .+..+++.+. .+..|+.+|.+++.++.++. .....+.+|..+... .....|
T Consensus 2 ~~iIiG~G~--~G~~la~~L~~~g~~vvvid~d~~~~~~~~~-------------~~~~~~~gd~~~~~~l~~a~i~~a~ 66 (134)
T d2hmva1 2 QFAVIGLGR--FGGSIVKELHRMGHEVLAVDINEEKVNAYAS-------------YATHAVIANATEENELLSLGIRNFE 66 (134)
T ss_dssp CEEEECCSH--HHHHHHHHHHHTTCCCEEEESCHHHHHHTTT-------------TCSEEEECCTTCTTHHHHHTGGGCS
T ss_pred EEEEECCCH--HHHHHHHHHHHCCCeEEEecCcHHHHHHHHH-------------hCCcceeeecccchhhhccCCcccc
Confidence 355667764 3344433331 12689999999998887642 234566788765321 124678
Q ss_pred EEEEccCCCCc---hHHHHHhcCCCcEEEEEeCC
Q 028002 146 AIHVGAAAPEI---PQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 146 ~V~~~~~~~~~---~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.+++..+-... .-.....+.+...++.-..+
T Consensus 67 ~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~ 100 (134)
T d2hmva1 67 YVIVAIGANIQASTLTTLLLKELDIPNIWVKAQN 100 (134)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred EEEEEcCchHHhHHHHHHHHHHcCCCcEEeeccc
Confidence 77766554321 12233445566666654433
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=90.02 E-value=1.3 Score=29.03 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=56.3
Q ss_pred CEEEEEcCCccHHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC----CCCCc
Q 028002 70 MHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EFAPY 144 (215)
Q Consensus 70 ~~vLdiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~~ 144 (215)
.+++-+|+|. .+..+++.+. .+..++.+|.++.......+.... ..+.++.+|..+... .-+..
T Consensus 4 nHiII~G~g~--~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~---------~~~~vi~Gd~~d~~~L~~a~i~~a 72 (153)
T d1id1a_ 4 DHFIVCGHSI--LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG---------DNADVIPGDSNDSSVLKKAGIDRC 72 (153)
T ss_dssp SCEEEECCSH--HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC---------TTCEEEESCTTSHHHHHHHTTTTC
T ss_pred CEEEEECCCH--HHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc---------CCcEEEEccCcchHHHHHhccccC
Confidence 4677777764 3344433331 126899999998754433333322 478899999876311 22568
Q ss_pred cEEEEccCCCCch---HHHHHhcCCCcEEEEEeCC
Q 028002 145 DAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 145 D~V~~~~~~~~~~---~~~~~~Lk~gG~lv~~~~~ 176 (215)
|.|++...-...- -...+.+.|...++.-+.+
T Consensus 73 ~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~ 107 (153)
T d1id1a_ 73 RAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp SEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred CEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcC
Confidence 8888776543211 2234566777777776544
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=89.77 E-value=0.78 Score=29.32 Aligned_cols=86 Identities=9% Similarity=-0.017 Sum_probs=56.9
Q ss_pred CCccHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----CCCCCccEEEEccC
Q 028002 77 SGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAPYDAIHVGAA 152 (215)
Q Consensus 77 ~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~~D~V~~~~~ 152 (215)
||.|..+..+++.+. ...++.+|.++...+..+. ..+.++.+|..+.. ..-+..+.+++...
T Consensus 6 ~G~g~~g~~l~~~L~-~~~i~vi~~d~~~~~~~~~-------------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~ 71 (129)
T d2fy8a1 6 CGWSESTLECLRELR-GSEVFVLAEDENVRKKVLR-------------SGANFVHGDPTRVSDLEKANVRGARAVIVNLE 71 (129)
T ss_dssp ESCCHHHHHHHHTSC-GGGEEEEESCTTHHHHHHH-------------TTCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred ECCCHHHHHHHHHHc-CCCCEEEEcchHHHHHHHh-------------cCccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence 456778888888774 3678999999998765532 36788899987521 12256788877654
Q ss_pred CCC---chHHHHHhcCCCcEEEEEeCC
Q 028002 153 APE---IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 153 ~~~---~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
-.. ..-...+.+.|...++..+.+
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~iia~~~~ 98 (129)
T d2fy8a1 72 SDSETIHCILGIRKIDESVRIIAEAER 98 (129)
T ss_dssp SHHHHHHHHHHHHHHCSSSCEEEECSS
T ss_pred chhhhHHHHHHHHHHCCCceEEEEEcC
Confidence 422 112345677888887776554
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=89.69 E-value=0.45 Score=33.45 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHH
Q 028002 67 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSI 110 (215)
Q Consensus 67 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~ 110 (215)
-.+.+|+--|+|. |......+...| .+++..|.++..+..+.
T Consensus 25 L~gk~v~IqG~G~VG~~~A~~L~~~G--akvvv~d~d~~~~~~~~ 67 (201)
T d1c1da1 25 LDGLTVLVQGLGAVGGSLASLAAEAG--AQLLVADTDTERVAHAV 67 (201)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEecchHHHHHHHH
Confidence 3568999999997 655555544445 79999999998877654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.34 E-value=0.51 Score=32.81 Aligned_cols=43 Identities=28% Similarity=0.399 Sum_probs=31.9
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHh
Q 028002 70 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 115 (215)
Q Consensus 70 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~ 115 (215)
.+|--+|+|+ |. .+..++.. | ..|+.+|.+++.++.+.+++..
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~-G--~~V~l~D~~~~~l~~a~~~i~~ 49 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAAT-G--HTVVLVDQTEDILAKSKKGIEE 49 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T--CEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHhC-C--CcEEEEECChHHHHHHHhhHHH
Confidence 3788999998 43 33344444 3 7899999999999988777653
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=88.83 E-value=1.6 Score=31.70 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecC-hHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC-----
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHI-PELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----- 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s-~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----- 138 (215)
+++++|-.|++.|. ++..+++. | .+|+..+.+ ++.++...+.+...+ .++.+..+|..+..
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~-G--a~Vvi~~~~~~~~~~~~~~~~~~~g-------~~~~~~~~D~~~~~~v~~~ 86 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRR-G--CKVIVNYANSTESAEEVVAAIKKNG-------SDAACVKANVGVVEDIVRM 86 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-T--CEEEEEESSCHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-C--CEEEEEeCCchHHHHHHHHHHHhhC-------CceeeEeCCCCCHHHHHHH
Confidence 36788888887663 34444444 3 688888876 456666666666544 46888888887621
Q ss_pred -----CCCCCccEEEEccCC
Q 028002 139 -----PEFAPYDAIHVGAAA 153 (215)
Q Consensus 139 -----~~~~~~D~V~~~~~~ 153 (215)
...+..|+++.+...
T Consensus 87 ~~~~~~~~g~idilV~nag~ 106 (272)
T d1g0oa_ 87 FEEAVKIFGKLDIVCSNSGV 106 (272)
T ss_dssp HHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHhCCCCcccccccc
Confidence 112578988877643
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=88.76 E-value=1.4 Score=26.79 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=45.0
Q ss_pred CCCCEEEEEcCC-ccH--HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCC
Q 028002 67 KPGMHALDIGSG-TGY--LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 143 (215)
Q Consensus 67 ~~~~~vLdiG~G-~G~--~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (215)
....+|.=+|.| +|. ++..+.++ | .+|+|.|....... +.+.+ ..+.+..+...... ..
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~-G--~~VsGSD~~~~~~~---~~L~~---------~Gi~v~~g~~~~~i---~~ 67 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNE-G--YQISGSDIADGVVT---QRLAQ---------AGAKIYIGHAEEHI---EG 67 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHH-T--CEEEEEESCCSHHH---HHHHH---------TTCEEEESCCGGGG---TT
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhC-C--CEEEEEeCCCChhh---hHHHH---------CCCeEEECCccccC---CC
Confidence 445678778755 464 34455555 4 79999998643211 23333 24555555544333 35
Q ss_pred ccEEEEccCCCCchHHHHHh
Q 028002 144 YDAIHVGAAAPEIPQALIDQ 163 (215)
Q Consensus 144 ~D~V~~~~~~~~~~~~~~~~ 163 (215)
.|+|+.+...+.--.++...
T Consensus 68 ~d~vV~S~AI~~~npel~~A 87 (96)
T d1p3da1 68 ASVVVVSSAIKDDNPELVTS 87 (96)
T ss_dssp CSEEEECTTSCTTCHHHHHH
T ss_pred CCEEEECCCcCCCCHHHHHH
Confidence 79998888775533344433
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=87.52 E-value=1.5 Score=31.59 Aligned_cols=77 Identities=16% Similarity=0.105 Sum_probs=51.1
Q ss_pred CCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC---------
Q 028002 69 GMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--------- 138 (215)
Q Consensus 69 ~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--------- 138 (215)
++.+|--|++.| +...+++.+ ....+|+.++.+++.++...+.+...+ .++..+.+|+.+..
T Consensus 2 gKValITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g-------~~~~~~~~Dvs~~~~v~~~~~~~ 73 (257)
T d2rhca1 2 SEVALVTGATSG-IGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG-------VEADGRTCDVRSVPEIEALVAAV 73 (257)
T ss_dssp CCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEeecCCHHHHHHHHHHH
Confidence 445677776655 333333333 112689999999999988888777643 47888999987621
Q ss_pred -CCCCCccEEEEccCC
Q 028002 139 -PEFAPYDAIHVGAAA 153 (215)
Q Consensus 139 -~~~~~~D~V~~~~~~ 153 (215)
...+..|+++.+...
T Consensus 74 ~~~~g~iDilVnnAG~ 89 (257)
T d2rhca1 74 VERYGPVDVLVNNAGR 89 (257)
T ss_dssp HHHTCSCSEEEECCCC
T ss_pred HHHhCCCCEEEecccc
Confidence 122678988877643
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=87.29 E-value=2.8 Score=27.88 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=52.1
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCC--CCCCC-CCCCc
Q 028002 70 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG--RKGWP-EFAPY 144 (215)
Q Consensus 70 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~--~~~~~-~~~~~ 144 (215)
.+|--+|+|. |. ++..+++. | .+|+.+|.++..++..++.-..... ........... ..... ....+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~-G--~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~e~~~~a 73 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK-G--QSVLAWDIDAQRIKEIQDRGAIIAE-----GPGLAGTAHPDLLTSDIGLAVKDA 73 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T--CEEEEECSCHHHHHHHHHHTSEEEE-----SSSCCEEECCSEEESCHHHHHTTC
T ss_pred CEEEEECccHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHcCCCchh-----hhhhhhhhhhhhhhhhhHhHhcCC
Confidence 5788899997 43 34444544 4 6999999999887766543111000 01111111110 01000 01468
Q ss_pred cEEEEccCCC---CchHHHHHhcCCCcEEEE
Q 028002 145 DAIHVGAAAP---EIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 145 D~V~~~~~~~---~~~~~~~~~Lk~gG~lv~ 172 (215)
|+|+...... .+.+++..+|+++-.+++
T Consensus 74 D~iii~v~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 74 DVILIVVPAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp SEEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred CEEEEEEchhHHHHHHHHhhhccCCCCEEEE
Confidence 9988765543 344667788888876654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=87.13 E-value=1.7 Score=31.44 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC------
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~------ 138 (215)
+++.+|-.|++.|. .+..+++. | .+|+.+|.+++.++.+.+.+...+ .++..+.+|+.+..
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~-G--a~V~~~~r~~~~l~~~~~~~~~~g-------~~~~~~~~Dv~~~~~v~~~~ 73 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEE-G--TAIALLDMNREALEKAEASVREKG-------VEARSYVCDVTSEEAVIGTV 73 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHTTT-------SCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEccCCCHHHHHHHH
Confidence 47788988877663 33444444 3 789999999999998888877644 46788889987521
Q ss_pred ----CCCCCccEEEEccC
Q 028002 139 ----PEFAPYDAIHVGAA 152 (215)
Q Consensus 139 ----~~~~~~D~V~~~~~ 152 (215)
...+..|+++.+..
T Consensus 74 ~~~~~~~g~iDilVnnaG 91 (260)
T d1zema1 74 DSVVRDFGKIDFLFNNAG 91 (260)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHhCCCCeehhhhc
Confidence 11257898887754
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.06 E-value=0.74 Score=31.42 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=47.5
Q ss_pred CEEEEEcCCc-cHHHHHHHHHhCCCCeEEEE-ecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 70 MHALDIGSGT-GYLTACFALMVGPQGRAVGV-EHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 70 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~-D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
.+|.-+|||. |.......+.. ++.+++++ |.+++..+...+. .+.. .... ...|..+.... ...|+|
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~-~~~~i~ai~d~~~~~~~~~~~~---~~~~-----~~~~-~~~~~~~ll~~-~~iD~v 70 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLA-PNATISGVASRSLEKAKAFATA---NNYP-----ESTK-IHGSYESLLED-PEIDAL 70 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHH---TTCC-----TTCE-EESSHHHHHHC-TTCCEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-CCCEEEEEEeCCccccccchhc---cccc-----ccee-ecCcHHHhhhc-ccccee
Confidence 3678899996 65555555553 44677764 8887765444332 2211 1122 22333222222 468988
Q ss_pred EEccCCCCchHHHHHhcCCCcEEEE
Q 028002 148 HVGAAAPEIPQALIDQLKPGGRMVI 172 (215)
Q Consensus 148 ~~~~~~~~~~~~~~~~Lk~gG~lv~ 172 (215)
+...+...-.+.+...|+.|=-+++
T Consensus 71 ~I~tp~~~h~~~~~~~l~~g~~v~~ 95 (184)
T d1ydwa1 71 YVPLPTSLHVEWAIKAAEKGKHILL 95 (184)
T ss_dssp EECCCGGGHHHHHHHHHTTTCEEEE
T ss_pred eecccchhhcchhhhhhhccceeec
Confidence 7766554434444444554433333
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=86.86 E-value=2 Score=31.04 Aligned_cols=76 Identities=14% Similarity=0.067 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC------
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~------ 138 (215)
+++++|-.|++.|. .+..+++. | .+|+.++.++..++.+.+.+...+ ..+.++.+|+.+.-
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~-G--~~V~i~~r~~~~l~~~~~~~~~~~-------~~~~~~~~D~s~~~~~~~~~ 74 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGL-G--ARVYTCSRNEKELDECLEIWREKG-------LNVEGSVCDLLSRTERDKLM 74 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcC-------CCceEEEeecCCHHHHHHHH
Confidence 47889999987652 33344444 3 789999999999888888877654 46778889987521
Q ss_pred ----C-CCCCccEEEEccCC
Q 028002 139 ----P-EFAPYDAIHVGAAA 153 (215)
Q Consensus 139 ----~-~~~~~D~V~~~~~~ 153 (215)
. ..+..|+++.+...
T Consensus 75 ~~~~~~~~g~idilinnag~ 94 (258)
T d1ae1a_ 75 QTVAHVFDGKLNILVNNAGV 94 (258)
T ss_dssp HHHHHHTTSCCCEEEECCCC
T ss_pred HHHHHHhCCCcEEEeccccc
Confidence 0 11468888876643
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.59 E-value=1.9 Score=30.78 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC------C
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG------W 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~------~ 138 (215)
.|+++|-.|++.|. .+..+++. | .+|+.+|.+++.++...+.+ ..+..+..|+.+. .
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~-G--~~V~~~~r~~~~l~~~~~~~-----------~~~~~~~~Dv~d~~~v~~~~ 71 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHAT-G--ARVVAVSRTQADLDSLVREC-----------PGIEPVCVDLGDWEATERAL 71 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHS-----------TTCEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-C--CEEEEEECCHHHHHHHHHhc-----------CCCeEEEEeCCCHHHHHHHH
Confidence 57899999987762 33344443 3 78999999988777655432 3566777887652 1
Q ss_pred CCCCCccEEEEccCC
Q 028002 139 PEFAPYDAIHVGAAA 153 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~ 153 (215)
...++.|+++.+...
T Consensus 72 ~~~g~iDilVnnAg~ 86 (244)
T d1pr9a_ 72 GSVGPVDLLVNNAAV 86 (244)
T ss_dssp TTCCCCCEEEECCCC
T ss_pred HHhCCceEEEecccc
Confidence 223689998877643
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=86.39 E-value=0.89 Score=31.28 Aligned_cols=75 Identities=12% Similarity=0.071 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC---CCCC
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WPEF 141 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~ 141 (215)
++.+||-.|++.|. .+..+++. | .+|+.++.+.+.++...+.+.... ++.+...|..+. ....
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~-G--~~V~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~d~~~~~~~~~~~ 90 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGE-G--AEVVLCGRKLDKAQAAADSVNKRF--------KVNVTAAETADDASRAEAV 90 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-T--CEEEEEESSHHHHHHHHHHHHHHH--------TCCCEEEECCSHHHHHHHT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhh-c--cchhhcccchHHHHHHHHHHHhcc--------chhhhhhhcccHHHHHHHh
Confidence 57899999976652 33344444 3 789999999999888877776542 223333343321 1112
Q ss_pred CCccEEEEccCC
Q 028002 142 APYDAIHVGAAA 153 (215)
Q Consensus 142 ~~~D~V~~~~~~ 153 (215)
+..|+++.+...
T Consensus 91 ~~iDilin~Ag~ 102 (191)
T d1luaa1 91 KGAHFVFTAGAI 102 (191)
T ss_dssp TTCSEEEECCCT
T ss_pred cCcCeeeecCcc
Confidence 568999887653
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=86.30 E-value=0.71 Score=27.00 Aligned_cols=44 Identities=11% Similarity=-0.006 Sum_probs=35.0
Q ss_pred CCCCCEEEEEcCCc--cHHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 028002 66 LKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 111 (215)
Q Consensus 66 ~~~~~~vLdiG~G~--G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 111 (215)
.+++.+||-.|... |..++.+++.+| .+|+++-.+++..+.+++
T Consensus 29 ~~~~~~vlI~gasGgVG~~aiQlak~~G--~~Vi~~t~s~~k~~~~~~ 74 (77)
T d1o8ca2 29 RPQDGEIVVTGASGGVGSTAVALLHKLG--YQVVAVSGRESTHEYLKS 74 (77)
T ss_dssp CGGGCEEEESSTTSHHHHHHHHHHHHTT--CCEEEEESCGGGHHHHHH
T ss_pred ccCCCcEEEEeCCCcHHHHHHHHHHHcC--CeEEEEECCHHHHHHHHH
Confidence 46778888877643 788888998876 689999999988887764
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=86.24 E-value=2.2 Score=30.72 Aligned_cols=78 Identities=15% Similarity=0.159 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--------
Q 028002 68 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------- 138 (215)
+++++|-.|++.| ++..+++.+ ....+|+.++.+++.++.+.+.+...+ .++..+.+|+.+..
T Consensus 10 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g-------~~~~~~~~Dvs~~~~~~~~~~~ 81 (255)
T d1fmca_ 10 DGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-------GQAFACRCDITSEQELSALADF 81 (255)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------CcEEEEEccCCCHHHHHHHHHH
Confidence 4678887776655 444444433 223789999999999888888777644 46788889987621
Q ss_pred --CCCCCccEEEEccCC
Q 028002 139 --PEFAPYDAIHVGAAA 153 (215)
Q Consensus 139 --~~~~~~D~V~~~~~~ 153 (215)
...+..|+++.+...
T Consensus 82 ~~~~~g~iDilvnnAG~ 98 (255)
T d1fmca_ 82 AISKLGKVDILVNNAGG 98 (255)
T ss_dssp HHHHHSSCCEEEECCCC
T ss_pred HHHHcCCCCEeeeCCcC
Confidence 112578988877643
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.11 E-value=1.6 Score=31.35 Aligned_cols=80 Identities=18% Similarity=0.111 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-------
Q 028002 68 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP------- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------- 139 (215)
.|+.+|-.|++.| +...+++.+ ....+|+.+|.+++.++.+.+.+.... ...++.++.+|+.+...
T Consensus 2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~ 75 (254)
T d2gdza1 2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF-----EPQKTLFIQCDVADQQQLRDTFRK 75 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS-----CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc-----CCCcEEEEEeecCCHHHHHHHHHH
Confidence 3678888887765 333333332 112789999999998888777665432 11478888999876211
Q ss_pred ---CCCCccEEEEccCC
Q 028002 140 ---EFAPYDAIHVGAAA 153 (215)
Q Consensus 140 ---~~~~~D~V~~~~~~ 153 (215)
..+..|+++.+...
T Consensus 76 ~~~~~G~iDilVnnAg~ 92 (254)
T d2gdza1 76 VVDHFGRLDILVNNAGV 92 (254)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHcCCcCeecccccc
Confidence 12578999888755
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=85.90 E-value=2.9 Score=27.90 Aligned_cols=74 Identities=16% Similarity=0.137 Sum_probs=43.0
Q ss_pred CCCCCEEEEEcCCcc-HHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 66 LKPGMHALDIGSGTG-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
..++.+||-+|||.- ......+...+ .+++.+..+....+...+.+... ..+... +..+. ....+
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g--~~i~I~nRt~~ka~~l~~~~~~~--------~~~~~~--~~~~~--~~~~~ 80 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLD--CAVTITNRTVSRAEELAKLFAHT--------GSIQAL--SMDEL--EGHEF 80 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHHTGGG--------SSEEEC--CSGGG--TTCCC
T ss_pred CCCCCEEEEECCcHHHHHHHHHhcccc--eEEEeccchHHHHHHHHHHHhhc--------cccccc--ccccc--ccccc
Confidence 356789999999863 33333333434 47999999887766655554432 123222 22111 12568
Q ss_pred cEEEEccCC
Q 028002 145 DAIHVGAAA 153 (215)
Q Consensus 145 D~V~~~~~~ 153 (215)
|+|+...+.
T Consensus 81 dliIN~Tp~ 89 (170)
T d1nyta1 81 DLIINATSS 89 (170)
T ss_dssp SEEEECCSC
T ss_pred ceeeccccc
Confidence 988876644
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=85.84 E-value=2 Score=30.87 Aligned_cols=75 Identities=17% Similarity=0.122 Sum_probs=49.5
Q ss_pred EEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC----------C
Q 028002 71 HALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----------P 139 (215)
Q Consensus 71 ~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----------~ 139 (215)
.+|-.|++.| ++..+++.+ ....+|+.+|.+++.++...+.+...+ .++..+.+|+.+.. .
T Consensus 3 ValITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g-------~~~~~~~~Dv~~~~~v~~~~~~~~~ 74 (255)
T d1gega_ 3 VALVTGAGQG-IGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG-------GHAVAVKVDVSDRDQVFAAVEQARK 74 (255)
T ss_dssp EEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEEcCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 3567777655 333333332 112789999999999988888777644 47788889987621 1
Q ss_pred CCCCccEEEEccCC
Q 028002 140 EFAPYDAIHVGAAA 153 (215)
Q Consensus 140 ~~~~~D~V~~~~~~ 153 (215)
..++.|+++.+...
T Consensus 75 ~~g~iDilVnnAG~ 88 (255)
T d1gega_ 75 TLGGFDVIVNNAGV 88 (255)
T ss_dssp HTTCCCEEEECCCC
T ss_pred HhCCccEEEecccc
Confidence 22679998877643
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=85.50 E-value=2.3 Score=31.06 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--------
Q 028002 68 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------- 138 (215)
+|+++|-.|++.| ++..+++.+ ....+|+.+|.++..++.+.+.+....- .++.++.+|..+..
T Consensus 24 ~gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g------~~~~~~~~D~~~~~~v~~~~~~ 96 (294)
T d1w6ua_ 24 QGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG------NKVHAIQCDVRDPDMVQNTVSE 96 (294)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS------SCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcC------CceEEEEecccChHHHHHHhhh
Confidence 3578888888765 333333332 1127999999999888877766654321 46778888887521
Q ss_pred --CCCCCccEEEEccCC
Q 028002 139 --PEFAPYDAIHVGAAA 153 (215)
Q Consensus 139 --~~~~~~D~V~~~~~~ 153 (215)
...+..|+++.+...
T Consensus 97 ~~~~~g~iDilvnnAg~ 113 (294)
T d1w6ua_ 97 LIKVAGHPNIVINNAAG 113 (294)
T ss_dssp HHHHTCSCSEEEECCCC
T ss_pred hhhhccccchhhhhhhh
Confidence 112678988877643
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=85.31 E-value=2.3 Score=30.61 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC------
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~------ 138 (215)
+++++|-.|++.|. .+..+++. | .+|+.+|.+++.++.+.+.+...+ .++.+..+|+.+..
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~-G--a~V~~~~r~~~~l~~~~~~~~~~g-------~~~~~~~~Dv~~~~~v~~~~ 76 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASL-G--ASVYTCSRNQKELNDCLTQWRSKG-------FKVEASVCDLSSRSERQELM 76 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTT-------CEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcC-------CCceEEEeeCCCHHHHHHHH
Confidence 47888988887653 33344444 2 689999999999988887776643 46778888887511
Q ss_pred ----CC-CCCccEEEEccCC
Q 028002 139 ----PE-FAPYDAIHVGAAA 153 (215)
Q Consensus 139 ----~~-~~~~D~V~~~~~~ 153 (215)
.. .+..|+++.+...
T Consensus 77 ~~~~~~~~~~idilvnnAG~ 96 (259)
T d2ae2a_ 77 NTVANHFHGKLNILVNNAGI 96 (259)
T ss_dssp HHHHHHTTTCCCEEEECCCC
T ss_pred HHHHHHhCCCceEEEECCce
Confidence 11 1368999887653
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=84.99 E-value=3.8 Score=27.24 Aligned_cols=52 Identities=10% Similarity=-0.118 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCCCEEEEEcCCcc-HHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 028002 58 CLQLLEENLKPGMHALDIGSGTG-YLTACFALMVGPQGRAVGVEHIPELVVSSIQN 112 (215)
Q Consensus 58 ~l~~l~~~~~~~~~vLdiG~G~G-~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~ 112 (215)
+++... ..++.+||-+|||.- ......+...|. .+++.+..+.+..+...+.
T Consensus 8 ~l~~~~--~~~~~~vlIlGaGGaarai~~aL~~~g~-~~I~I~nR~~~ka~~L~~~ 60 (167)
T d1npya1 8 LIEKYH--LNKNAKVIVHGSGGMAKAVVAAFKNSGF-EKLKIYARNVKTGQYLAAL 60 (167)
T ss_dssp HHHHTT--CCTTSCEEEECSSTTHHHHHHHHHHTTC-CCEEEECSCHHHHHHHHHH
T ss_pred HHHHcC--CCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecccHHHHHHHHHh
Confidence 344433 456789999999974 333333444444 5799999998766655443
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=84.38 E-value=3.7 Score=26.54 Aligned_cols=78 Identities=17% Similarity=0.068 Sum_probs=41.7
Q ss_pred CEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEEE
Q 028002 70 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 148 (215)
Q Consensus 70 ~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V~ 148 (215)
++|.-+|+|. |......+...+...++..+|+++...+.....+..... .......+...+..+.. ...|+|+
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~---~~~~~~~i~~~~~~~~~---~dadvvv 74 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP---VGLFDTKVTGSNDYADT---ANSDIVI 74 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH---HHTCCCEEEEESCGGGG---TTCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccc---hhcccceEEecCCHHHh---cCCeEEE
Confidence 3677789875 544444433323346899999999776544333322111 11134444433322222 4578888
Q ss_pred EccCC
Q 028002 149 VGAAA 153 (215)
Q Consensus 149 ~~~~~ 153 (215)
.....
T Consensus 75 itag~ 79 (142)
T d1guza1 75 ITAGL 79 (142)
T ss_dssp ECCSC
T ss_pred EEEec
Confidence 77654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=84.25 E-value=3.3 Score=29.74 Aligned_cols=77 Identities=19% Similarity=0.184 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-----
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----- 139 (215)
+++++|-.|++.|. .+..+++. | .+|+.+|.+++.++.+.+.+...... .++..+.+|+.+...
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~-G--a~V~i~~r~~~~l~~~~~~~~~~~~~-----~~~~~~~~Dvt~~~~v~~~~ 74 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAE-G--AKLSLVDVSSEGLEASKAAVLETAPD-----AEVLTTVADVSDEAQVEAYV 74 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHHCTT-----CCEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhhCCC-----CeEEEEeccCCCHHHHHHHH
Confidence 36788888887763 34455554 3 78999999999988887776654321 477888899876211
Q ss_pred -----CCCCccEEEEccC
Q 028002 140 -----EFAPYDAIHVGAA 152 (215)
Q Consensus 140 -----~~~~~D~V~~~~~ 152 (215)
..+..|+++.+..
T Consensus 75 ~~~~~~~G~iDiLVnnAG 92 (258)
T d1iy8a_ 75 TATTERFGRIDGFFNNAG 92 (258)
T ss_dssp HHHHHHHSCCSEEEECCC
T ss_pred HHHHHHhCCCCEEEECCc
Confidence 1267899887764
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=84.11 E-value=1.7 Score=25.99 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=40.1
Q ss_pred EEEEEcC-CccHH--HHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccEE
Q 028002 71 HALDIGS-GTGYL--TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 147 (215)
Q Consensus 71 ~vLdiG~-G~G~~--~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~V 147 (215)
+|-=+|- |+|.. +..+.++ | ..|+|.|..+... .+.+...+ +.+..+.-.+.. ...|+|
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~~~-G--~~VsGSD~~~~~~---t~~L~~~G---------i~i~~gh~~~~i---~~~d~v 64 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEFSN-G--NDVYGSNIEETER---TAYLRKLG---------IPIFVPHSADNW---YDPDLV 64 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-T--CEEEEECSSCCHH---HHHHHHTT---------CCEESSCCTTSC---CCCSEE
T ss_pred EEEEEeECHHHHHHHHHHHHhC-C--CeEEEEeCCCChh---HHHHHHCC---------CeEEeeeccccc---CCCCEE
Confidence 4444553 34543 3344444 3 7999999887432 22355543 444444222222 357999
Q ss_pred EEccCCCCchHHHHHh
Q 028002 148 HVGAAAPEIPQALIDQ 163 (215)
Q Consensus 148 ~~~~~~~~~~~~~~~~ 163 (215)
+.+...+.--.++...
T Consensus 65 V~SsAI~~~npel~~A 80 (89)
T d1j6ua1 65 IKTPAVRDDNPEIVRA 80 (89)
T ss_dssp EECTTCCTTCHHHHHH
T ss_pred EEecCcCCCCHHHHHH
Confidence 8888776544444433
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.60 E-value=3.2 Score=29.48 Aligned_cols=72 Identities=22% Similarity=0.237 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCC------C
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG------W 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~------~ 138 (215)
+|+++|-.|++.|. .+..+++. | .+|+.++.+++.++...+.+ ..+..+..|+.+. .
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~-G--a~V~~~~r~~~~l~~~~~~~-----------~~~~~~~~Dv~~~~~v~~~~ 69 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHAS-G--AKVVAVTRTNSDLVSLAKEC-----------PGIEPVCVDLGDWDATEKAL 69 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHS-----------TTCEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHhc-----------CCCeEEEEeCCCHHHHHHHH
Confidence 47889988877663 33334443 2 78999999987766554332 3566777887652 1
Q ss_pred CCCCCccEEEEccCC
Q 028002 139 PEFAPYDAIHVGAAA 153 (215)
Q Consensus 139 ~~~~~~D~V~~~~~~ 153 (215)
...++.|+++.+...
T Consensus 70 ~~~g~iDilVnnAg~ 84 (242)
T d1cyda_ 70 GGIGPVDLLVNNAAL 84 (242)
T ss_dssp TTCCCCSEEEECCCC
T ss_pred HHcCCCeEEEECCcc
Confidence 123679998877643
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=83.48 E-value=0.22 Score=30.22 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
++.+|+-+|-|- |..+..++...| .+|++.|..+..... +.+. ....+..+...... ...+|.
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g--~~v~~~D~~~~~~~~--~~~~----------~~~~~~~~~~~~~~--~~~~d~ 67 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRMTPPGL--DKLP----------EAVERHTGSLNDEW--LMAADL 67 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTT--CCCEEEESSSSCTTG--GGSC----------TTSCEEESBCCHHH--HHHCSE
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCC--CEEEEeeCCcCchhH--HHHh----------hccceeecccchhh--hccCCE
Confidence 367899999995 654444444434 789999975531110 0000 23334443322111 146899
Q ss_pred EEEccCCCCchHHHHHhcC
Q 028002 147 IHVGAAAPEIPQALIDQLK 165 (215)
Q Consensus 147 V~~~~~~~~~~~~~~~~Lk 165 (215)
|+.++..+.-...+....+
T Consensus 68 vi~SPGi~~~~~~~~~a~~ 86 (93)
T d2jfga1 68 IVASPGIALAHPSLSAAAD 86 (93)
T ss_dssp EEECTTSCTTSHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHH
Confidence 9998887644444433333
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=83.46 E-value=0.98 Score=31.04 Aligned_cols=99 Identities=9% Similarity=0.050 Sum_probs=54.0
Q ss_pred CEEEEEcCCc-cH-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhccc----Cccc-------CCCeEEEeCCCCC
Q 028002 70 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA----PLLK-------EGSLSVHVGDGRK 136 (215)
Q Consensus 70 ~~vLdiG~G~-G~-~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~-------~~~v~~~~~d~~~ 136 (215)
.+|--+|+|+ |. .+..++.. | .+|+.+|.+++.++.+.+++...... ..+. ..++.. ..+. .
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~-G--~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~-~ 79 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASK-G--TPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSY-G 79 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHT-T--CCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSS-T
T ss_pred CEEEEECcCHHHHHHHHHHHhC-C--CeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-cccc-c
Confidence 3588899998 43 23334443 3 68999999999988877765432110 0000 011222 1111 1
Q ss_pred CCCCCCCccEEEEccCCC-----CchHHHHHhcCCCcEEEEEeCC
Q 028002 137 GWPEFAPYDAIHVGAAAP-----EIPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 137 ~~~~~~~~D~V~~~~~~~-----~~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
. ....|+|+-..+-. .++.++-+.++++-.|.-++..
T Consensus 80 ~---~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~ 121 (186)
T d1wdka3 80 D---FGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST 121 (186)
T ss_dssp T---GGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS
T ss_pred c---ccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEecccc
Confidence 1 14578887643321 2445666777777766655443
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.32 E-value=2.3 Score=30.90 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-----
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----- 139 (215)
+|+++|-.|++.|. .+..+++. | .+|+.+|.+++.++.+.+.+...+.. ..++..+.+|+.+...
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~-G--a~V~~~~r~~~~l~~~~~~i~~~~~~----~~~~~~~~~Dv~~~~~v~~~~ 75 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKE-G--AQVTITGRNEDRLEETKQQILKAGVP----AEKINAVVADVTEASGQDDII 75 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTTCC----GGGEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEEeeCCCHHHHHHHH
Confidence 36788888887763 33344444 2 78999999999999888887765421 1468889999876211
Q ss_pred -----CCCCccEEEEccC
Q 028002 140 -----EFAPYDAIHVGAA 152 (215)
Q Consensus 140 -----~~~~~D~V~~~~~ 152 (215)
..+..|+++.+..
T Consensus 76 ~~~~~~~G~iDilVnnAG 93 (274)
T d1xhla_ 76 NTTLAKFGKIDILVNNAG 93 (274)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHcCCceEEEeecc
Confidence 1257899887754
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.14 E-value=2.8 Score=30.22 Aligned_cols=76 Identities=14% Similarity=0.034 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-----
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----- 139 (215)
+++++|-.|++.|. .+..+++. | .+|+.++.++..++.+.+.+...+ .++....+|+.+...
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~-G--a~V~~~~r~~~~l~~~~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~ 76 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGF-G--AVIHTCARNEYELNECLSKWQKKG-------FQVTGSVCDASLRPEREKLM 76 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTT-------CCEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcC-------CceEEEeccCCCHHHHHHHH
Confidence 47889998887763 33344444 3 789999999998888877776543 478888888875210
Q ss_pred -----C-CCCccEEEEccCC
Q 028002 140 -----E-FAPYDAIHVGAAA 153 (215)
Q Consensus 140 -----~-~~~~D~V~~~~~~ 153 (215)
. .+..|+++.+...
T Consensus 77 ~~~~~~~~g~idilvnnAG~ 96 (259)
T d1xq1a_ 77 QTVSSMFGGKLDILINNLGA 96 (259)
T ss_dssp HHHHHHHTTCCSEEEEECCC
T ss_pred HHHHHHhCCCcccccccccc
Confidence 1 1578998877643
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.77 E-value=4.5 Score=26.36 Aligned_cols=79 Identities=15% Similarity=0.174 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCccE
Q 028002 68 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 146 (215)
Q Consensus 68 ~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~ 146 (215)
.+.+|--+|+|. |......+...+--.++..+|+++...+--..-+..-.. +....+.+...|.... ...|+
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~---~~~~~~~~~~~d~~~l----~daDv 77 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKV---FAPKPVDIWHGDYDDC----RDADL 77 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTT---SSSSCCEEEECCGGGT----TTCSE
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCcc---ccCCCeEEEECCHHHh----cccee
Confidence 456899999986 654444443334436899999998875432222322111 1223455555554332 45799
Q ss_pred EEEccCC
Q 028002 147 IHVGAAA 153 (215)
Q Consensus 147 V~~~~~~ 153 (215)
|+.....
T Consensus 78 vvitag~ 84 (148)
T d1ldna1 78 VVICAGA 84 (148)
T ss_dssp EEECCSC
T ss_pred EEEeccc
Confidence 9876654
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.53 E-value=5.1 Score=26.77 Aligned_cols=87 Identities=16% Similarity=0.096 Sum_probs=53.6
Q ss_pred CCCCCEEEEEcCCc-cHHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 66 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
.-.+++|.-+|-|. |.-....++.+| .+|+.+|++|...-.|. . +...+.. ..+.. ...
T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G--~~V~v~e~dp~~al~A~--~-----------dG~~v~~--~~~a~---~~a 80 (163)
T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGFG--ARVIITEIDPINALQAA--M-----------EGYEVTT--MDEAC---QEG 80 (163)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCHHHHHHHH--H-----------TTCEECC--HHHHT---TTC
T ss_pred eecCCEEEEeccccccHHHHHHHHhCC--CeeEeeecccchhHHhh--c-----------CceEeee--hhhhh---hhc
Confidence 45688999998886 655555555554 79999999985422221 1 1222221 11111 346
Q ss_pred cEEEEccCCCC-chHHHHHhcCCCcEEEE
Q 028002 145 DAIHVGAAAPE-IPQALIDQLKPGGRMVI 172 (215)
Q Consensus 145 D~V~~~~~~~~-~~~~~~~~Lk~gG~lv~ 172 (215)
|++++.....+ +-.+-.+.||+|-+|.-
T Consensus 81 divvtaTGn~~vI~~eh~~~MKdgaIL~N 109 (163)
T d1li4a1 81 NIFVTTTGCIDIILGRHFEQMKDDAIVCN 109 (163)
T ss_dssp SEEEECSSCSCSBCHHHHTTCCTTEEEEE
T ss_pred cEEEecCCCccchhHHHHHhccCCeEEEE
Confidence 88888877755 44677888888765543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=82.39 E-value=2.7 Score=30.31 Aligned_cols=76 Identities=14% Similarity=0.066 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCccHHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC--------
Q 028002 68 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-------- 138 (215)
+++.+|-.|++.| +...+++.+ ....+|+.+|.+++.++.+.+.+... ..+.++.+|+.+..
T Consensus 5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~--------~~~~~~~~Dv~~~~~v~~~~~~ 75 (268)
T d2bgka1 5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP--------DVISFVHCDVTKDEDVRNLVDT 75 (268)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT--------TTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC--------CceEEEEccCCCHHHHHHHHHH
Confidence 4788999998776 333333332 12278999999998888777665432 46778888887521
Q ss_pred --CCCCCccEEEEccC
Q 028002 139 --PEFAPYDAIHVGAA 152 (215)
Q Consensus 139 --~~~~~~D~V~~~~~ 152 (215)
...+..|+++.+..
T Consensus 76 ~~~~~g~iD~lVnnAG 91 (268)
T d2bgka1 76 TIAKHGKLDIMFGNVG 91 (268)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCcceeccccc
Confidence 11257898887664
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=81.78 E-value=2.7 Score=30.46 Aligned_cols=78 Identities=22% Similarity=0.176 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCC------
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 138 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~------ 138 (215)
+++++|-.|++.|. .+..+++. | .+|+.++.+++.++.+.+.+...+. ...++..+.+|+.+..
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~-G--a~V~l~~r~~~~l~~~~~~l~~~~~----~~~~~~~~~~Dvs~~~~v~~~~ 76 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQE-G--ANVTITGRSSERLEETRQIILKSGV----SEKQVNSVVADVTTEDGQDQII 76 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHTTTC----CGGGEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcCC----CCCceEEEEccCCCHHHHHHHH
Confidence 36788888877652 33344444 3 7899999999999988888776432 1246888999987621
Q ss_pred ----CCCCCccEEEEccC
Q 028002 139 ----PEFAPYDAIHVGAA 152 (215)
Q Consensus 139 ----~~~~~~D~V~~~~~ 152 (215)
...+..|+++.+..
T Consensus 77 ~~~~~~~g~iDilvnnAG 94 (272)
T d1xkqa_ 77 NSTLKQFGKIDVLVNNAG 94 (272)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHhCCceEEEeCCc
Confidence 11257898887753
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=81.71 E-value=2.9 Score=30.10 Aligned_cols=78 Identities=21% Similarity=0.184 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-----
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----- 139 (215)
+++.+|-.|++.|. .+..+++. | .+|+.++.+++.++.+.+.+...+. ...++.++.+|+.+.-.
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~-G--a~V~~~~r~~~~l~~~~~~l~~~~~----~~~~~~~~~~Dvt~~~~v~~~~ 76 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFARE-G--AKVTITGRHAERLEETRQQILAAGV----SEQNVNSVVADVTTDAGQDEIL 76 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHTTC----CGGGEEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcCC----CcCceEEEEccCCCHHHHHHHH
Confidence 36778888877653 33334444 3 7899999999999888888776542 12468899999875211
Q ss_pred -----CCCCccEEEEccC
Q 028002 140 -----EFAPYDAIHVGAA 152 (215)
Q Consensus 140 -----~~~~~D~V~~~~~ 152 (215)
..+..|+++.+..
T Consensus 77 ~~~~~~~g~iDilvnnAG 94 (264)
T d1spxa_ 77 STTLGKFGKLDILVNNAG 94 (264)
T ss_dssp HHHHHHHSCCCEEEECCC
T ss_pred HHHHHHhCCCCEeecccc
Confidence 1257898877653
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.21 E-value=3.4 Score=29.76 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCccH---HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCC-----
Q 028002 68 PGMHALDIGSGTGY---LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----- 139 (215)
Q Consensus 68 ~~~~vLdiG~G~G~---~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~----- 139 (215)
+|.++|-.|+++|. ++..+++. | .+|+.++.+++.++.+.+.+..... ..+.....|......
T Consensus 13 ~GK~alITGassGIG~aiA~~la~~-G--~~Vil~~r~~~~l~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~ 83 (269)
T d1xu9a_ 13 QGKKVIVTGASKGIGREMAYHLAKM-G--AHVVVTARSKETLQKVVSHCLELGA------ASAHYIAGTMEDMTFAEQFV 83 (269)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHHHHTC------SEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHhhhhc------ccchhhhhhhhhHHHHHHHH
Confidence 47889999988873 44444544 3 7999999999998888776554322 356666666654110
Q ss_pred -----CCCCccEEEEccC
Q 028002 140 -----EFAPYDAIHVGAA 152 (215)
Q Consensus 140 -----~~~~~D~V~~~~~ 152 (215)
..+..|+++.+..
T Consensus 84 ~~~~~~~g~~~~li~nag 101 (269)
T d1xu9a_ 84 AQAGKLMGGLDMLILNHI 101 (269)
T ss_dssp HHHHHHHTSCSEEEECCC
T ss_pred HHHHHHhCCccccccccc
Confidence 1256788876654
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=80.96 E-value=5.9 Score=26.42 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=47.2
Q ss_pred CCCCCEEEEEcCCccHHHH-HHHHHhCCCCeEEEEecChHHHHHHHHHHHhhcccCcccCCCeEEEeCCCCCCCCCCCCc
Q 028002 66 LKPGMHALDIGSGTGYLTA-CFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 144 (215)
Q Consensus 66 ~~~~~~vLdiG~G~G~~~~-~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (215)
..++.+||-+|||.-.-+. ..+.. +. .+++.+..+.+..+...+++... .++.....+.. ....+
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~-~~-~~i~I~nR~~~~a~~l~~~~~~~--------~~~~~~~~~~~----~~~~~ 80 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQ-AQ-QNIVLANRTFSKTKELAERFQPY--------GNIQAVSMDSI----PLQTY 80 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHH-TT-CEEEEEESSHHHHHHHHHHHGGG--------SCEEEEEGGGC----CCSCC
T ss_pred CCCCCEEEEECCcHHHHHHHHHHcc-cC-ceeeeccchHHHHHHHHHHHhhc--------cccchhhhccc----ccccc
Confidence 3467899999998633222 32333 34 68999999998877777766542 24444443321 12679
Q ss_pred cEEEEccCC
Q 028002 145 DAIHVGAAA 153 (215)
Q Consensus 145 D~V~~~~~~ 153 (215)
|+|+...+.
T Consensus 81 diiIN~tp~ 89 (171)
T d1p77a1 81 DLVINATSA 89 (171)
T ss_dssp SEEEECCCC
T ss_pred ceeeecccc
Confidence 999888665
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=80.70 E-value=0.33 Score=35.34 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=33.9
Q ss_pred EEEeCCCCC---CCCCCCCccEEEEccCCC----------C-------chHHHHHhcCCCcEEEEEeCC
Q 028002 128 SVHVGDGRK---GWPEFAPYDAIHVGAAAP----------E-------IPQALIDQLKPGGRMVIPVGN 176 (215)
Q Consensus 128 ~~~~~d~~~---~~~~~~~~D~V~~~~~~~----------~-------~~~~~~~~Lk~gG~lv~~~~~ 176 (215)
.++.+|..+ .+++ +++|+|+.+++.. . ..+++.++|||+|.+++....
T Consensus 6 ~~~~~D~le~l~~l~d-~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~ 73 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPD-DSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL 73 (279)
T ss_dssp EEEECCHHHHHHTSCT-TCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred eEEechHHHHHhhCcC-CCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCc
Confidence 466677654 3333 7899999999752 1 224688999999999986643
|