Citrus Sinensis ID: 028025

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKVKHYSCTIL
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHcccHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccccHHccEEEEEEEcccccHHHHHHHHHHHHccEEEEHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHccccccccEEEEEEccHHHHHHHHHcHHHccccccHHHHHHHHHHHHHccHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mgtvvetpvkeadatvtvkkpTVVFvlggpgsgkgtqcaNIVEHfgythlsaGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEEsgndkflidgfprneenRAAFEAVTKIEPEFVLFFDCSEEEMERRILNrnqgreddnvETIRKRFKVFLESSLPVVQYYEAKgkvrkidaakpVAEVFDAVKavftpkdekvkhysctil
Flexible Loop (DISEMBL)
mgtvvetpvkeadatvtvkkptvvFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQnmikegkivpSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIlnrnqgreddnveTIRKRFKvflesslpvVQYYEAKGKVRKIDAAKPVAEVFDAvkavftpkdekvkhysctil
Low Complexity Region (SEG)
MGTVVETPVKEADAtvtvkkptvvfvLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKVKHYSCTIL
Disordered region (IsUnstruct)
*************ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK******TMIQNMIKEGKIVPSEVTIKLLQK*******DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE******************VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKVKHY*****
Disordered Region (DISOPRED)
**********************VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK*****GTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKVKHYSCTIL
Disordered Region (DISEMBL)
**********EADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE**********
Disordered Region (DISPRO)
*****E*****ADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKV********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKVKHYSCTIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
O04905	202	UMP/CMP kinase OS=Arabido	yes	no	0.906	0.965	0.841	2e-94
O24464	231	Adenylate kinase OS=Prunu	N/A	no	0.925	0.861	0.59	5e-65
Q5ZKE7	196	UMP-CMP kinase OS=Gallus	yes	no	0.841	0.923	0.549	2e-51
Q7ZX23	193	UMP-CMP kinase OS=Xenopus	N/A	no	0.841	0.937	0.539	2e-51
Q28H12	196	UMP-CMP kinase OS=Xenopus	no	no	0.841	0.923	0.539	2e-50
Q7ZWE9	196	UMP-CMP kinase OS=Danio r	no	no	0.860	0.943	0.533	2e-50
Q2KIW9	196	UMP-CMP kinase OS=Bos tau	yes	no	0.841	0.923	0.534	1e-49
P30085	196	UMP-CMP kinase OS=Homo sa	yes	no	0.841	0.923	0.534	1e-49
Q4KM73	196	UMP-CMP kinase OS=Rattus	yes	no	0.841	0.923	0.534	6e-49
Q29561	196	UMP-CMP kinase OS=Sus scr	yes	no	0.841	0.923	0.523	6e-49

>sp|O04905|UMPK_ARATH UMP/CMP kinase OS=Arabidopsis thaliana GN=PYR6 PE=1 SV=1

 Score =  344 bits (883), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 164/195 (84%), Positives = 183/195 (93%)

Query: 14  ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM 73
           A  + KKPTV+FVLGGPGSGKGTQCA IVEH+GYTHLSAGDLLRAEIKSGSENGTMIQNM
Sbjct: 7   ANGSGKKPTVIFVLGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNM 66

Query: 74  IKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS 133
           IKEGKIVPSEVTIKLLQKA++E+GNDKFLIDGFPRNEENRAAFE VT+IEP+FVLFFDC 
Sbjct: 67  IKEGKIVPSEVTIKLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCP 126

Query: 134 EEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF 193
           EEEME+R+L RNQGREDDN+ETIRKRFKVFLESSLPV+ YYEAKGKVRKI+AAKP+  VF
Sbjct: 127 EEEMEKRLLGRNQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEAVF 186

Query: 194 DAVKAVFTPKDEKVK 208
           + VKA+F+P+ EKV+
Sbjct: 187 EEVKAIFSPEAEKVE 201

Furnishes the cell with pyrimidines. Accepts UMP and CMP as phosphate acceptors with high activity; does not act on dCMP and dUMP.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 1EC: 4

>sp|O24464|KAD_PRUAR Adenylate kinase OS=Prunus armeniaca PE=2 SV=1

 Score =  247 bits (630), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 118/200 (59%), Positives = 150/200 (75%), Gaps = 1/200 (0%)

Query: 4   VVETPVKEADATVTVK-KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 62
           + ET   E++     K  P V FVLGGPGSGKGTQCA IVE FG+TH+SAGDLLR EI S
Sbjct: 29  IWETFTSESEIPTPSKGSPFVTFVLGGPGSGKGTQCAKIVEAFGFTHVSAGDLLRREIAS 88

Query: 63  GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI 122
           GS  G++I + I+EGKIVPS+VT++L+QK ME S N KFLIDGFPR+EENR AFE     
Sbjct: 89  GSAYGSVILSTIREGKIVPSQVTVELIQKEMESSDNYKFLIDGFPRSEENRKAFEQTIGA 148

Query: 123 EPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRK 182
           EP+ VLFFDC E+EM +R+LNRNQGR DDN++TI+KR ++F E + PV+ YY  +GK+ K
Sbjct: 149 EPDVVLFFDCPEQEMVKRVLNRNQGRVDDNIDTIKKRLEIFDELNWPVINYYSQRGKLHK 208

Query: 183 IDAAKPVAEVFDAVKAVFTP 202
           I+A   V E+F+ V+ +F P
Sbjct: 209 INAVGTVDEIFEKVRPIFAP 228

This small ubiquitous enzyme is essential for maintenance and cell growth.

Prunus armeniaca (taxid: 36596)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q5ZKE7|KCY_CHICK UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/191 (54%), Positives = 133/191 (69%), Gaps = 10/191 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAGDLLR E K  GS+ G +I+N IKEG+
Sbjct: 2   KPVVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGDLLRDERKRPGSQYGELIENYIKEGE 61

Query: 79  IVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++AM++     S  +KFLIDGFPRNE+N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKRAMDQTMAANSQKNKFLIDGFPRNEDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           C  E    R L R +  GR DDN E++ KR   +L+S+ P++  YE  GKVR++DA+K V
Sbjct: 122 CDNEICIGRCLERGKSSGRSDDNRESLEKRIHTYLQSTRPIIDLYERMGKVRRVDASKSV 181

Query: 190 AEVFDAVKAVF 200
            EVF+ V  +F
Sbjct: 182 DEVFEKVVQIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q7ZX23|KCY_XENLA UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=2

 Score =  201 bits (512), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 103/191 (53%), Positives = 133/191 (69%), Gaps = 10/191 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++GK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGK 61

Query: 79  IVPSEVTIKLLQKAME-----ESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LLQ+AME     ++   KFLIDGFPRNE+N   +E     K +  FVLFFD
Sbjct: 62  IVPVEITISLLQRAMERTMAFDANKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           C  E    R L R +  GR DDN E++ KR + +L+S+ P++  YE +GKVRK+DA+K V
Sbjct: 122 CDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKRGKVRKVDASKSV 181

Query: 190 AEVFDAVKAVF 200
            EVF  V+ +F
Sbjct: 182 DEVFTKVQNIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q28H12|KCY_XENTR UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2 SV=2

 Score =  199 bits (505), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/191 (53%), Positives = 134/191 (70%), Gaps = 10/191 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++G+
Sbjct: 2   KPFVVFVLGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGR 61

Query: 79  IVPSEVTIKLLQKAMEES----GN-DKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LLQ+AME++    GN  KFLIDGFPRNE+N   +E     K +  FVLFFD
Sbjct: 62  IVPVEITISLLQRAMEQTMALDGNKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           C  E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+K+DA+K V
Sbjct: 122 CDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKTGKVKKVDASKSV 181

Query: 190 AEVFDAVKAVF 200
            EVF  V+ +F
Sbjct: 182 DEVFTKVQDIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q7ZWE9|KCY_DANRE UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2

 Score =  198 bits (504), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/195 (53%), Positives = 137/195 (70%), Gaps = 10/195 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSGSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE++ YTHLSAGDLLR E  ++ SE G +I + IKEGK
Sbjct: 2   KPQVVFVLGGPGAGKGTQCARIVENYSYTHLSAGDLLREERSRTDSEFGQLIDSYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEESGND-----KFLIDGFPRNEENRAAF--EAVTKIEPEFVLFFD 131
           IVP ++TI LL+KAMEE+        +FLIDGFPRN++N   +  E   K + +FVLFFD
Sbjct: 62  IVPVQITINLLRKAMEETMKADEKKFRFLIDGFPRNQDNLQGWNTEMDGKADVKFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           CS E    R L R +  GR DDN E++ KR + +L+S+ P+++ YE +GKV++IDA++ V
Sbjct: 122 CSNEVCIDRCLERGKSSGRTDDNRESLEKRIQTYLQSTRPIIELYEKQGKVQRIDASRSV 181

Query: 190 AEVFDAVKAVFTPKD 204
            EVF  VK +    D
Sbjct: 182 DEVFADVKNILEKDD 196

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q2KIW9|KCY_BOVIN UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2

 Score =  196 bits (498), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 133/191 (69%), Gaps = 10/191 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GK
Sbjct: 2   KPQVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGK 61

Query: 79  IVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           C+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKVRKIDA+K V
Sbjct: 122 CNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVRKIDASKSV 181

Query: 190 AEVFDAVKAVF 200
            EVFD V  +F
Sbjct: 182 DEVFDEVVKIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|P30085|KCY_HUMAN UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3

 Score =  196 bits (497), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 133/191 (69%), Gaps = 10/191 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           C+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V
Sbjct: 122 CNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSV 181

Query: 190 AEVFDAVKAVF 200
            EVFD V  +F
Sbjct: 182 DEVFDEVVQIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q4KM73|KCY_RAT UMP-CMP kinase OS=Rattus norvegicus GN=Cmpk1 PE=1 SV=2

 Score =  193 bits (491), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 132/191 (69%), Gaps = 10/191 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           C+ E    R L R +  GR DDN E++ KR + +LES+ P++  YE  GKV+KIDA+K V
Sbjct: 122 CNNEICIDRCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKIDASKSV 181

Query: 190 AEVFDAVKAVF 200
            EVF  V  +F
Sbjct: 182 DEVFGDVMKIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q29561|KCY_PIG UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1

 Score =  193 bits (491), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 100/191 (52%), Positives = 133/191 (69%), Gaps = 10/191 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           +P VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GK
Sbjct: 2   RPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGK 61

Query: 79  IVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           C+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V
Sbjct: 122 CNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSV 181

Query: 190 AEVFDAVKAVF 200
            EVFD V  +F
Sbjct: 182 DEVFDEVVKIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
224136530	199	predicted protein [Populus trichocarpa]	0.879	0.949	0.915	3e-98
118488800	199	unknown [Populus trichocarpa]	0.879	0.949	0.910	9e-98
351726572	237	uncharacterized protein LOC100306603 [Gl	0.972	0.881	0.823	9e-98
255571119	210	uridylate kinase plant, putative [Ricinu	0.948	0.971	0.857	3e-97
224067399	199	predicted protein [Populus trichocarpa]	0.879	0.949	0.894	2e-96
357513083	208	Uridylate kinase [Medicago truncatula] g	0.958	0.990	0.805	1e-95
225454048	210	PREDICTED: uridylate kinase isoform 1 [V	0.962	0.985	0.831	1e-95
449432344	209	PREDICTED: UMP/CMP kinase-like [Cucumis	0.958	0.985	0.816	1e-95
351721579	207	uncharacterized protein LOC100500111 [Gl	0.958	0.995	0.826	2e-95
30690243	208	Uridylate kinase [Arabidopsis thaliana]	0.939	0.971	0.836	2e-95

>gi|224136530|ref|XP_002326883.1| predicted protein [Populus trichocarpa] gi|222835198|gb|EEE73633.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 173/189 (91%), Positives = 185/189 (97%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK
Sbjct: 9   KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 68

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           IVPSEVTIKLLQKAM++SGNDKFLIDGFPRNEENRAAFEAVTKIEP FVLFFDC EEEME
Sbjct: 69  IVPSEVTIKLLQKAMQDSGNDKFLIDGFPRNEENRAAFEAVTKIEPAFVLFFDCPEEEME 128

Query: 139 RRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 198
           RRIL+RNQGREDDN+ETIRKRFKVFLESSLPVV+YY++KGKV+K+DAAKP+ EVF+ VKA
Sbjct: 129 RRILSRNQGREDDNIETIRKRFKVFLESSLPVVEYYDSKGKVQKVDAAKPIDEVFEVVKA 188

Query: 199 VFTPKDEKV 207
           +FTPKDEKV
Sbjct: 189 IFTPKDEKV 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488800|gb|ABK96210.1| unknown [Populus trichocarpa]

 Score =  361 bits (927), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 172/189 (91%), Positives = 184/189 (97%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK
Sbjct: 9   KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 68

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           IVPSEVTI LLQKAM++SGNDKFLIDGFPRNEENRAAFEAVTKIEP FVLFFDC EEEME
Sbjct: 69  IVPSEVTINLLQKAMQDSGNDKFLIDGFPRNEENRAAFEAVTKIEPAFVLFFDCPEEEME 128

Query: 139 RRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 198
           RRIL+RNQGREDDN+ETIRKRFKVFLESSLPVV+YY++KGKV+K+DAAKP+ EVF+ VKA
Sbjct: 129 RRILSRNQGREDDNIETIRKRFKVFLESSLPVVEYYDSKGKVQKVDAAKPIDEVFEVVKA 188

Query: 199 VFTPKDEKV 207
           +FTPKDEKV
Sbjct: 189 IFTPKDEKV 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726572|ref|NP_001237387.1| uncharacterized protein LOC100306603 [Glycine max] gi|255629041|gb|ACU14865.1| unknown [Glycine max]

 Score =  361 bits (927), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 173/210 (82%), Positives = 192/210 (91%), Gaps = 1/210 (0%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
           MGTV E   K+A+ ++  K P+VVFVLGGPGSGKGTQCANIV++FGYTHLSAGDLLRAEI
Sbjct: 1   MGTV-EAANKDANGSLLEKNPSVVFVLGGPGSGKGTQCANIVQNFGYTHLSAGDLLRAEI 59

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
           KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM+ESGNDKFLIDGFPRNEENRAAFE VT
Sbjct: 60  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFEKVT 119

Query: 121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
            IEP FVLFFDC EEEMERR+L+RNQGREDDN+ETIRKRFKVFLESSLPV+ YY+AKGKV
Sbjct: 120 GIEPAFVLFFDCPEEEMERRLLSRNQGREDDNIETIRKRFKVFLESSLPVINYYDAKGKV 179

Query: 181 RKIDAAKPVAEVFDAVKAVFTPKDEKVKHY 210
            KIDAA+P+ EVF+ VKA+F PK++KV HY
Sbjct: 180 HKIDAARPIEEVFETVKAIFGPKNDKVNHY 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571119|ref|XP_002526510.1| uridylate kinase plant, putative [Ricinus communis] gi|223534185|gb|EEF35901.1| uridylate kinase plant, putative [Ricinus communis]

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 175/204 (85%), Positives = 188/204 (92%)

Query: 3   TVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 62
           +VV    KE +  V  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS
Sbjct: 4   SVVGVARKEENGDVVEKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 63

Query: 63  GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI 122
           GSENGTMIQNMIKEGKIVPSEVTIKLLQKAM+ESGNDKFLIDGFPRNEENRAAFE+VTKI
Sbjct: 64  GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFESVTKI 123

Query: 123 EPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRK 182
            PEFVLFFDCSEEEMERR+L+RNQGR DDN+ETIRKRFKVFLESS+PVV+YYE+KGKVRK
Sbjct: 124 VPEFVLFFDCSEEEMERRLLSRNQGRVDDNIETIRKRFKVFLESSIPVVEYYESKGKVRK 183

Query: 183 IDAAKPVAEVFDAVKAVFTPKDEK 206
           IDAAK + EVF+ VKA+F  KDEK
Sbjct: 184 IDAAKSIEEVFEDVKAIFAQKDEK 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067399|ref|XP_002302480.1| predicted protein [Populus trichocarpa] gi|118488191|gb|ABK95915.1| unknown [Populus trichocarpa] gi|222844206|gb|EEE81753.1| predicted protein [Populus trichocarpa]

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 169/189 (89%), Positives = 183/189 (96%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           KKP V+FVLGGPGSGKGTQCAN+VEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK
Sbjct: 9   KKPAVIFVLGGPGSGKGTQCANVVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 68

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           IVPSEVTIKLLQKAM+ESGNDKFLIDGFPRNEENRAAFEAVTKIEP FVLFF+C EEEME
Sbjct: 69  IVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFEAVTKIEPAFVLFFNCPEEEME 128

Query: 139 RRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 198
           +RIL+RNQGREDDN+ETIRKRF VFLESSLPVV+YY++KGKVRK+DAAK V EVF+AVKA
Sbjct: 129 KRILSRNQGREDDNIETIRKRFNVFLESSLPVVEYYDSKGKVRKVDAAKSVEEVFEAVKA 188

Query: 199 VFTPKDEKV 207
           +FTPK+EKV
Sbjct: 189 IFTPKEEKV 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513083|ref|XP_003626830.1| Uridylate kinase [Medicago truncatula] gi|217075148|gb|ACJ85934.1| unknown [Medicago truncatula] gi|355520852|gb|AET01306.1| Uridylate kinase [Medicago truncatula] gi|388507198|gb|AFK41665.1| unknown [Medicago truncatula]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 166/206 (80%), Positives = 191/206 (92%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
           MGTV+E   K+ + +V  K PTVVFVLGGPGSGKGTQCAN+VEHFG+THLSAGDLLRAEI
Sbjct: 1   MGTVIEAANKDTNGSVLNKNPTVVFVLGGPGSGKGTQCANVVEHFGFTHLSAGDLLRAEI 60

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
           KSGSENGTMIQNMIKEGKIVPSEVTI+LLQ+A++++GNDKFLIDGFPRNEENRAAFE VT
Sbjct: 61  KSGSENGTMIQNMIKEGKIVPSEVTIRLLQQAIKDNGNDKFLIDGFPRNEENRAAFERVT 120

Query: 121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
            IEP FVL+FDC EEEMERR+L+RNQGREDDN+ETIRKRFKVFL+SSLPV+ YY+AKGKV
Sbjct: 121 GIEPAFVLYFDCPEEEMERRLLSRNQGREDDNIETIRKRFKVFLDSSLPVINYYDAKGKV 180

Query: 181 RKIDAAKPVAEVFDAVKAVFTPKDEK 206
           RK+DAA+PV EVF++VKA+F PK+EK
Sbjct: 181 RKVDAARPVEEVFESVKAIFGPKNEK 206

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454048|ref|XP_002263322.1| PREDICTED: uridylate kinase isoform 1 [Vitis vinifera] gi|359489116|ref|XP_003633878.1| PREDICTED: uridylate kinase isoform 2 [Vitis vinifera] gi|359489119|ref|XP_003633879.1| PREDICTED: uridylate kinase isoform 3 [Vitis vinifera] gi|297744838|emb|CBI38106.3| unnamed protein product [Vitis vinifera]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 173/208 (83%), Positives = 190/208 (91%), Gaps = 1/208 (0%)

Query: 1   MGTVVETPVKEADATVTV-KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59
           MG+  E+ +KE +  +   KK  VVFVLGGPGSGKGTQCANIV+HFGYTHLSAGDLLRAE
Sbjct: 1   MGSAPESVIKETNENLLAEKKVKVVFVLGGPGSGKGTQCANIVKHFGYTHLSAGDLLRAE 60

Query: 60  IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV 119
           IKSGSENG MIQ+MIKEGKIVPSEVTIKLLQ+A+ E  NDKFLIDGFPRNEENRAAFEAV
Sbjct: 61  IKSGSENGNMIQSMIKEGKIVPSEVTIKLLQRAILEDSNDKFLIDGFPRNEENRAAFEAV 120

Query: 120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK 179
           TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV++YYE+KGK
Sbjct: 121 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVIEYYESKGK 180

Query: 180 VRKIDAAKPVAEVFDAVKAVFTPKDEKV 207
           VRKIDAA+ + EVF+AVKAVFTP +E+V
Sbjct: 181 VRKIDAAQSIEEVFEAVKAVFTPTNEQV 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432344|ref|XP_004133959.1| PREDICTED: UMP/CMP kinase-like [Cucumis sativus] gi|449515542|ref|XP_004164808.1| PREDICTED: UMP/CMP kinase-like [Cucumis sativus]

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 169/207 (81%), Positives = 191/207 (92%), Gaps = 1/207 (0%)

Query: 1   MGTVVET-PVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59
           MGTVV+  P+KE + ++  KKPTVVFVLGGPGSGKGTQCANIV+HFGYTHLSAGDLLRAE
Sbjct: 1   MGTVVDAAPIKETNGSLAEKKPTVVFVLGGPGSGKGTQCANIVQHFGYTHLSAGDLLRAE 60

Query: 60  IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV 119
           IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ+A+EE+GN+KFLIDGFPRNEENRAAFE V
Sbjct: 61  IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQRAIEETGNEKFLIDGFPRNEENRAAFEVV 120

Query: 120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK 179
           T IEP  VLFFDC EEEME+R+L+RN+GR DDN+ETIRKRF+VFLESS+PV+QYYE+K K
Sbjct: 121 TGIEPSIVLFFDCPEEEMEKRLLSRNEGRVDDNIETIRKRFRVFLESSIPVIQYYESKEK 180

Query: 180 VRKIDAAKPVAEVFDAVKAVFTPKDEK 206
           VRKIDAA+PV EVF++VKAVFTPK  K
Sbjct: 181 VRKIDAARPVEEVFESVKAVFTPKSAK 207

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721579|ref|NP_001236958.1| uncharacterized protein LOC100500111 [Glycine max] gi|255629285|gb|ACU14987.1| unknown [Glycine max]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 171/207 (82%), Positives = 189/207 (91%), Gaps = 1/207 (0%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
           MGTV E   K+A+ ++  K PTVVFVLGGPGSGKGTQCANIVE+FGYTHLSAGDLLRAEI
Sbjct: 1   MGTV-EAANKDANGSLLEKNPTVVFVLGGPGSGKGTQCANIVENFGYTHLSAGDLLRAEI 59

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
           KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM+ESGNDKFLIDGFPRNEENRAAFE VT
Sbjct: 60  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFEKVT 119

Query: 121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
            IEP FVLFF+C EEEMERR+L+RNQGREDDN+ETIR+RFKVFLESSLPV+ YY+AKGKV
Sbjct: 120 GIEPAFVLFFECPEEEMERRLLSRNQGREDDNIETIRRRFKVFLESSLPVINYYDAKGKV 179

Query: 181 RKIDAAKPVAEVFDAVKAVFTPKDEKV 207
           RKIDAA+P+ EVF+ VK +F PK+EK 
Sbjct: 180 RKIDAARPIEEVFETVKGIFGPKNEKA 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690243|ref|NP_850867.1| Uridylate kinase [Arabidopsis thaliana] gi|117958619|gb|ABK59674.1| At5g26667 [Arabidopsis thaliana] gi|332006175|gb|AED93558.1| Uridylate kinase [Arabidopsis thaliana]

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 169/202 (83%), Positives = 187/202 (92%)

Query: 14  ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM 73
           A  + KKPTV+FVLGGPGSGKGTQCA IVEH+GYTHLSAGDLLRAEIKSGSENGTMIQNM
Sbjct: 7   ANGSGKKPTVIFVLGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNM 66

Query: 74  IKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS 133
           IKEGKIVPSEVTIKLLQKA++E+GNDKFLIDGFPRNEENRAAFE VT+IEP+FVLFFDC 
Sbjct: 67  IKEGKIVPSEVTIKLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCP 126

Query: 134 EEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF 193
           EEEME+R+L RNQGREDDN+ETIRKRFKVFLESSLPV+ YYEAKGKVRKI+AAKP+  VF
Sbjct: 127 EEEMEKRLLGRNQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEAVF 186

Query: 194 DAVKAVFTPKDEKVKHYSCTIL 215
           + VKA+F+P+ EKVK  SC IL
Sbjct: 187 EEVKAIFSPEAEKVKLNSCAIL 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
TAIR|locus:1005716878	208	PYR6 [Arabidopsis thaliana (ta	0.879	0.908	0.851	2.7e-84
TAIR|locus:2101472	204	AT3G60180 [Arabidopsis thalian	0.930	0.980	0.695	1.6e-72
TAIR|locus:2122644	249	AT4G25280 [Arabidopsis thalian	0.855	0.738	0.6	2.3e-55
TAIR|locus:4515103290	136	AT3G60961 [Arabidopsis thalian	0.595	0.941	0.719	6e-48
UNIPROTKB|Q5ZKE7	196	CMPK1 "UMP-CMP kinase" [Gallus	0.809	0.887	0.538	4.4e-45
DICTYBASE|DDB_G0287495	195	pyrK "uridine monophosphate/cy	0.809	0.892	0.539	7.1e-45
ZFIN|ZDB-GENE-040426-2113	225	cmpk "cytidylate kinase" [Dani	0.827	0.791	0.526	5e-44
UNIPROTKB|Q2KIW9	196	CMPK1 "UMP-CMP kinase" [Bos ta	0.809	0.887	0.527	6.4e-44
UNIPROTKB|P30085	196	CMPK1 "UMP-CMP kinase" [Homo s	0.809	0.887	0.527	6.4e-44
UNIPROTKB|F1PIG2	228	CMPK1 "Uncharacterized protein	0.809	0.763	0.521	1e-43

TAIR|locus:1005716878 PYR6 [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
 Identities = 161/189 (85%), Positives = 177/189 (93%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
             LGGPGSGKGTQCA IVEH+GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI
Sbjct:    20 LGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 79

Query:    87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146
             KLLQKA++E+GNDKFLIDGFPRNEENRAAFE VT+IEP+FVLFFDC EEEME+R+L RNQ
Sbjct:    80 KLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCPEEEMEKRLLGRNQ 139

Query:   147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK 206
             GREDDN+ETIRKRFKVFLESSLPV+ YYEAKGKVRKI+AAKP+  VF+ VKA+F+P+ EK
Sbjct:   140 GREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEAVFEEVKAIFSPEAEK 199

Query:   207 VKHYSCTIL 215
             VK  SC IL
Sbjct:   200 VKLNSCAIL 208

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=ISS;IDA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0004127 "cytidylate kinase activity" evidence=IDA

GO:0009173 "pyrimidine ribonucleoside monophosphate metabolic process" evidence=TAS

TAIR|locus:2101472 AT3G60180 [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 139/200 (69%), Positives = 164/200 (82%)

Query:     1 MGTVVETPVKEADAXXXXXXXXXXXXLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
             M T ++ P K+               LGGPGSGKGTQCAN+V+HF YTH SAGDLLRAEI
Sbjct:     1 METPIDAPNKDEHECPRWKKSTVVFVLGGPGSGKGTQCANVVKHFSYTHFSAGDLLRAEI 60

Query:    61 KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
             KSGSE G MIQ+MI EG+IVPSE+T+KLL KAMEESGNDKFLIDGFPRNEENR  FE V 
Sbjct:    61 KSGSEFGAMIQSMIAEGRIVPSEITVKLLCKAMEESGNDKFLIDGFPRNEENRNVFENVA 120

Query:   121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
             +IEP FVLFFDC EEE+ERRI++RNQGREDDN+ETI+KRFKVF+ES+LP++ YYE+KGK+
Sbjct:   121 RIEPAFVLFFDCPEEELERRIMSRNQGREDDNIETIKKRFKVFVESTLPIISYYESKGKL 180

Query:   181 RKIDAAKPVAEVFDAVKAVF 200
             RKI+AAK   EVF+AV+ +F
Sbjct:   181 RKINAAKSSEEVFEAVRVLF 200

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2122644 AT4G25280 [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 111/185 (60%), Positives = 137/185 (74%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
             LGGPGSGKGTQC  IVE FG  HLSAGDLLR EI   +ENG MI N+IK+GKIVPSEVT+
Sbjct:    49 LGGPGSGKGTQCEKIVETFGLQHLSAGDLLRREIAMHTENGAMILNLIKDGKIVPSEVTV 108

Query:    87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146
             KL+QK +E S N KFLIDGFPR EENR AFE + + +P+ VLFFDC EEEM +R+LNRNQ
Sbjct:   109 KLIQKELESSDNRKFLIDGFPRTEENRVAFERIIRADPDVVLFFDCPEEEMVKRVLNRNQ 168

Query:   147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK 206
             GR DDN+ T++KR K+F   + PV+ YY+ KGK+  I+A   V ++F  V  +F    E+
Sbjct:   169 GRIDDNITTMKKRLKIFNALNRPVIDYYKNKGKLYTINAVGTVDDIFQHVLPIFN-SFEQ 227

Query:   207 VKHYS 211
             +K  S
Sbjct:   228 LKESS 232

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:4515103290 AT3G60961 [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 95/132 (71%), Positives = 115/132 (87%)

Query:    73 MIKEGKIVPSEVTIKLLQKAMEES----GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVL 128
             MI EG+IVPSE+T+KLL KAMEES    GNDKFLIDGFPRNEENR  FE V +IEP FVL
Sbjct:     1 MIAEGRIVPSEITVKLLCKAMEESFQVSGNDKFLIDGFPRNEENRIVFENVARIEPAFVL 60

Query:   129 FFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKP 188
             FFDC EEE+ERRI++RNQGREDDN+ETI+KRFKVF+ES+LP++ YY++KGK+RKI+AAK 
Sbjct:    61 FFDCPEEELERRIMSRNQGREDDNIETIKKRFKVFVESTLPIISYYQSKGKLRKINAAKS 120

Query:   189 VAEVFDAVKAVF 200
               EVF+AV+ +F
Sbjct:   121 SEEVFEAVRVLF 132

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

UNIPROTKB|Q5ZKE7 CMPK1 "UMP-CMP kinase" [Gallus gallus (taxid:9031)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 99/184 (53%), Positives = 127/184 (69%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA IVE +GYTHLSAGDLLR E K  GS+ G +I+N IKEG+IVP E+T
Sbjct:     9 LGGPGAGKGTQCARIVEKYGYTHLSAGDLLRDERKRPGSQYGELIENYIKEGEIVPVEIT 68

Query:    86 IKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
             I LL++AM++     S  +KFLIDGFPRNE+N   +      K +  FVLFFDC  E   
Sbjct:    69 ISLLKRAMDQTMAANSQKNKFLIDGFPRNEDNLQGWNKTMDGKADVSFVLFFDCDNEICI 128

Query:   139 RRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
              R L R +  GR DDN E++ KR   +L+S+ P++  YE  GKVR++DA+K V EVF+ V
Sbjct:   129 GRCLERGKSSGRSDDNRESLEKRIHTYLQSTRPIIDLYERMGKVRRVDASKSVDEVFEKV 188

Query:   197 KAVF 200
               +F
Sbjct:   189 VQIF 192

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

DICTYBASE|DDB_G0287495 pyrK "uridine monophosphate/cytidine monophosphate kinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 96/178 (53%), Positives = 127/178 (71%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
             LGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+IVPS VT+
Sbjct:    13 LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTV 72

Query:    87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
             KLL+ A++ +    FL+DGFPRNEEN  ++E   K  ++ +FVLFFDC EE M +R+L R
Sbjct:    73 KLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKR 132

Query:   145 NQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
              +  GR DDN+E+I+KRF  F   +  V+ +Y    KV+ I A + V EV++ V+ +F
Sbjct:   133 GESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLF 190

GO:0043100 "pyrimidine nucleobase salvage" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0046705 "CDP biosynthetic process" evidence=IDA

GO:0043173 "nucleotide salvage" evidence=IDA

GO:0033862 "UMP kinase activity" evidence=IDA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA;IDA

GO:0006225 "UDP biosynthetic process" evidence=IDA

GO:0005622 "intracellular" evidence=IC

GO:0004127 "cytidylate kinase activity" evidence=IEA;IDA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-040426-2113 cmpk "cytidylate kinase" [Danio rerio (taxid:7955)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 99/188 (52%), Positives = 133/188 (70%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSGSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA IVE++ YTHLSAGDLLR E  ++ SE G +I + IKEGKIVP ++T
Sbjct:    38 LGGPGAGKGTQCARIVENYSYTHLSAGDLLREERSRTDSEFGQLIDSYIKEGKIVPVQIT 97

Query:    86 IKLLQKAMEES--GNDK---FLIDGFPRNEENRAAF--EAVTKIEPEFVLFFDCSEEEME 138
             I LL+KAMEE+   ++K   FLIDGFPRN++N   +  E   K + +FVLFFDCS E   
Sbjct:    98 INLLRKAMEETMKADEKKFRFLIDGFPRNQDNLQGWNTEMDGKADVKFVLFFDCSNEVCI 157

Query:   139 RRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
              R L R +  GR DDN E++ KR + +L+S+ P+++ YE +GKV++IDA++ V EVF  V
Sbjct:   158 DRCLERGKSSGRTDDNRESLEKRIQTYLQSTRPIIELYEKQGKVQRIDASRSVDEVFADV 217

Query:   197 KAVFTPKD 204
             K +    D
Sbjct:   218 KNILEKDD 225

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q2KIW9 CMPK1 "UMP-CMP kinase" [Bos taurus (taxid:9913)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 97/184 (52%), Positives = 128/184 (69%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GKIVP E+T
Sbjct:     9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEIT 68

Query:    86 IKLLQKAMEES--GN---DKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
             I LL++ M+++   N   +KFLIDGFPRN++N   +      K +  FVLFFDC+ E   
Sbjct:    69 ISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128

Query:   139 RRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
              R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKVRKIDA+K V EVFD V
Sbjct:   129 ERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVRKIDASKSVDEVFDEV 188

Query:   197 KAVF 200
               +F
Sbjct:   189 VKIF 192

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

UNIPROTKB|P30085 CMPK1 "UMP-CMP kinase" [Homo sapiens (taxid:9606)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 97/184 (52%), Positives = 128/184 (69%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+T
Sbjct:     9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEIT 68

Query:    86 IKLLQKAMEES--GN---DKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
             I LL++ M+++   N   +KFLIDGFPRN++N   +      K +  FVLFFDC+ E   
Sbjct:    69 ISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128

Query:   139 RRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
              R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V EVFD V
Sbjct:   129 ERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEV 188

Query:   197 KAVF 200
               +F
Sbjct:   189 VQIF 192

GO:0005524 "ATP binding" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0006225 "UDP biosynthetic process" evidence=IEA

GO:0006227 "dUDP biosynthetic process" evidence=IEA

GO:0006240 "dCDP biosynthetic process" evidence=IEA

GO:0018963 "phthalate metabolic process" evidence=IEA

GO:0022602 "ovulation cycle process" evidence=IEA

GO:0033862 "UMP kinase activity" evidence=IEA

GO:0046705 "CDP biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0006222 "UMP biosynthetic process" evidence=TAS

UNIPROTKB|F1PIG2 CMPK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 96/184 (52%), Positives = 128/184 (69%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GKIVP E+T
Sbjct:    41 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPASQYGELIEKYIKDGKIVPVEIT 100

Query:    86 IKLLQKAMEES--GN---DKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
             I LL++ M+++   N   +KFLIDGFPRN++N   +      K +  FVLFFDC+ E   
Sbjct:   101 ISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 160

Query:   139 RRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
              R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V EVFD V
Sbjct:   161 ERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEV 220

Query:   197 KAVF 200
               +F
Sbjct:   221 VKIF 224

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7ZX23	KCY_XENLA	2, ., 7, ., 4, ., 1, 4	0.5392	0.8418	0.9378	N/A	no
Q89ZJ0	KAD_BACTN	2, ., 7, ., 4, ., 3	0.3655	0.8046	0.9153	yes	no
Q5LGH0	KAD_BACFN	2, ., 7, ., 4, ., 3	0.3783	0.8279	0.9417	yes	no
Q5ZKE7	KCY_CHICK	2, ., 7, ., 4, ., 1, 4	0.5497	0.8418	0.9234	yes	no
B9L9Y8	KAD_NAUPA	2, ., 7, ., 4, ., 3	0.3891	0.8279	0.9270	yes	no
Q8DML4	KAD_THEEB	2, ., 7, ., 4, ., 3	0.3567	0.8139	0.8974	yes	no
Q2KIW9	KCY_BOVIN	2, ., 7, ., 4, ., 1, 4	0.5340	0.8418	0.9234	yes	no
Q8P5P5	KAD_XANCP	2, ., 7, ., 4, ., 3	0.3631	0.8046	0.9251	yes	no
P15700	UMPK_YEAST	2, ., 7, ., 4, ., -	0.4890	0.8139	0.8578	yes	no
Q64XA6	KAD_BACFR	2, ., 7, ., 4, ., 3	0.3783	0.8279	0.9417	yes	no
Q8DS33	KAD_STRMU	2, ., 7, ., 4, ., 3	0.3398	0.8232	0.8349	yes	no
Q4KM73	KCY_RAT	2, ., 7, ., 4, ., 1, 4	0.5340	0.8418	0.9234	yes	no
Q8PH23	KAD_XANAC	2, ., 7, ., 4, ., 3	0.3631	0.8046	0.9251	yes	no
Q2P743	KAD_XANOM	2, ., 7, ., 4, ., 3	0.3611	0.8093	0.9304	yes	no
Q9DBP5	KCY_MOUSE	2, ., 7, ., 4, ., 1, 4	0.5340	0.8418	0.9234	yes	no
O04905	UMPK_ARATH	2, ., 7, ., 4, ., 1, 4	0.8410	0.9069	0.9653	yes	no
A6L0Z9	KAD_BACV8	2, ., 7, ., 4, ., 3	0.3978	0.8046	0.9153	yes	no
Q29561	KCY_PIG	2, ., 7, ., 4, ., 1, 4	0.5235	0.8418	0.9234	yes	no
P30085	KCY_HUMAN	2, ., 7, ., 4, ., 1, 4	0.5340	0.8418	0.9234	yes	no
A7HWT2	KAD_PARL1	2, ., 7, ., 4, ., 3	0.3440	0.8232	0.8634	yes	no
P20425	KCY_DICDI	2, ., 7, ., 4, ., 1, 4	0.5513	0.8418	0.9282	yes	no
O24464	KAD_PRUAR	2, ., 7, ., 4, ., 3	0.59	0.9255	0.8614	N/A	no
A5GVX9	KAD_SYNR3	2, ., 7, ., 4, ., 3	0.3406	0.8139	0.9615	yes	no
O59771	UMPK_SCHPO	2, ., 7, ., 4, ., -	0.4677	0.8232	0.9267	yes	no
A6LD69	KAD_PARD8	2, ., 7, ., 4, ., 3	0.3444	0.8093	0.9157	yes	no
Q3BPM9	KAD_XANC5	2, ., 7, ., 4, ., 3	0.3631	0.8046	0.9251	yes	no
Q4UYC6	KAD_XANC8	2, ., 7, ., 4, ., 3	0.3631	0.8046	0.9251	yes	no
Q5H4A4	KAD_XANOR	2, ., 7, ., 4, ., 3	0.3611	0.8093	0.9304	yes	no
Q6A6Q4	KAD_PROAC	2, ., 7, ., 4, ., 3	0.3262	0.8418	0.9576	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.921
4th Layer	2.7.4.14	0.914
3rd Layer	2.7.4.3	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	215
TIGR01359	183	TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family	1e-105
PLN02200	234	PLN02200, PLN02200, adenylate kinase family protei	5e-91
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	3e-68
TIGR01360	188	TIGR01360, aden_kin_iso1, adenylate kinase, isozym	2e-62
pfam00406	186	pfam00406, ADK, Adenylate kinase	3e-59
TIGR01351	210	TIGR01351, adk, adenylate kinase	3e-52
PRK00279	215	PRK00279, adk, adenylate kinase; Reviewed	1e-51
COG0563	178	COG0563, Adk, Adenylate kinase and related kinases	5e-44
PRK02496	184	PRK02496, adk, adenylate kinase; Provisional	8e-39
PRK14527	191	PRK14527, PRK14527, adenylate kinase; Provisional	1e-37
PRK14531	183	PRK14531, PRK14531, adenylate kinase; Provisional	4e-33
PRK14530	215	PRK14530, PRK14530, adenylate kinase; Provisional	8e-31
PRK14532	188	PRK14532, PRK14532, adenylate kinase; Provisional	1e-30
PRK14528	186	PRK14528, PRK14528, adenylate kinase; Provisional	2e-28
PLN02459	261	PLN02459, PLN02459, probable adenylate kinase	1e-24
PLN02842	505	PLN02842, PLN02842, nucleotide kinase	7e-24
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	1e-20
PRK14526	211	PRK14526, PRK14526, adenylate kinase; Provisional	2e-20
PLN02674	244	PLN02674, PLN02674, adenylate kinase	3e-19
PTZ00088	229	PTZ00088, PTZ00088, adenylate kinase 1; Provisiona	1e-15
PRK14529	223	PRK14529, PRK14529, adenylate kinase; Provisional	2e-14
pfam13207	114	pfam13207, AAA_17, AAA domain	5e-09
pfam13671	143	pfam13671, AAA_33, AAA domain	7e-06
pfam13238	128	pfam13238, AAA_18, AAA domain	2e-05
cd02020	147	cd02020, CMPK, Cytidine monophosphate kinase (CMPK	1e-04
PRK04182	180	PRK04182, PRK04182, cytidylate kinase; Provisional	2e-04
COG1102	179	COG1102, Cmk, Cytidylate kinase [Nucleotide transp	4e-04
COG0125	208	COG0125, Tmk, Thymidylate kinase [Nucleotide trans	0.001
cd01672	200	cd01672, TMPK, Thymidine monophosphate kinase (TMP	0.002
TIGR02173	171	TIGR02173, cyt_kin_arch, cytidylate kinase, putati	0.002

>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family

 Score =  300 bits (771), Expect = e-105
 Identities = 118/182 (64%), Positives = 149/182 (81%), Gaps = 4/182 (2%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           VVFVLGGPGSGKGTQCA IVE+FG+THLSAGDLLRAEIKSGSENG +I++MIK GKIVPS
Sbjct: 1   VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPS 60

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERR 140
           EVT+KLL+ A++  G+ KFLIDGFPRNEEN  A+E +   K+  +FVLFFDC EE M +R
Sbjct: 61  EVTVKLLKNAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKR 120

Query: 141 ILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 198
           +L R Q  GR DDN+E+I+KRF+ + E +LPV+++YE KGKV++I+A   V EVF+ V+ 
Sbjct: 121 LLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEK 180

Query: 199 VF 200
           +F
Sbjct: 181 IF 182

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. Length = 183

>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein

 Score =  266 bits (681), Expect = 5e-91
 Identities = 123/193 (63%), Positives = 144/193 (74%), Gaps = 1/193 (0%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           K P + FVLGGPGSGKGTQC  IVE FG+ HLSAGDLLR EI S SE+G MI N IKEGK
Sbjct: 41  KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGK 100

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           IVPSEVT+KL+QK ME S N+KFLIDGFPR EENR AFE +   EP  VLFFDC EEEM 
Sbjct: 101 IVPSEVTVKLIQKEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMV 160

Query: 139 RRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 198
           +R+LNRNQGR DDN++TI+KR KVF   +LPV+ YY  KGK+  I+A   V E+F+ V+ 
Sbjct: 161 KRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRP 220

Query: 199 VFTPKDEKVKHYS 211
           +F    E +K  S
Sbjct: 221 IFAAC-EAMKESS 232

Length = 234

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score =  207 bits (529), Expect = 3e-68
 Identities = 71/194 (36%), Positives = 107/194 (55%), Gaps = 24/194 (12%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
            + +LG PGSGKGTQ   + + +G  H+S GDLLR EI SG+E G   +  I  GK+VP 
Sbjct: 1   RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPD 60

Query: 83  EVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMER 139
           E+ IKLL++ +++      F++DGFPR  +   A + +    I+P+ V+  D  +E +  
Sbjct: 61  EIVIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIE 120

Query: 140 RILNR---------------------NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG 178
           RIL R                        R DDN ETI+KR +V+ E + P++ YY+ KG
Sbjct: 121 RILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKG 180

Query: 179 KVRKIDAAKPVAEV 192
           K+ +ID +  + EV
Sbjct: 181 KLVEIDGSGDIDEV 194

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily

 Score =  192 bits (489), Expect = 2e-62
 Identities = 88/183 (48%), Positives = 123/183 (67%), Gaps = 7/183 (3%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
            K  ++F++GGPGSGKGTQC  IVE +G+THLS GDLLRAE+ SGSE G  +Q +++ G 
Sbjct: 1   AKCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGD 60

Query: 79  IVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEE 135
           +VP +  + LL+ AM  +      FLIDG+PR  +    FE   +I  P  VL+FDCSE+
Sbjct: 61  LVPLDTVLDLLKDAMVAALGTSKGFLIDGYPREVKQGEEFER--RIGPPTLVLYFDCSED 118

Query: 136 EMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF 193
            M +R+L R +  GR DDN +TI+KR + + +++ PV+ YYE KGK+RKI+A   V +VF
Sbjct: 119 TMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVF 178

Query: 194 DAV 196
             V
Sbjct: 179 LQV 181

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188

>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase

 Score =  184 bits (468), Expect = 3e-59
 Identities = 66/186 (35%), Positives = 100/186 (53%), Gaps = 32/186 (17%)

Query: 26  VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT 85
           +LG PG+GKGTQ   IV+ +G  HLS GDLLRAE+KSG+E G   +  + +G++VP EV 
Sbjct: 1   LLGPPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60

Query: 86  IKLLQKAME-ESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRIL 142
           I L+++ +E     + FL+DGFPR      A E + +  I+ ++V+ FD  +E +  R+ 
Sbjct: 61  IGLVKERLEQNDCKNGFLLDGFPRTVPQAEALEEMLEYGIKLDYVIEFDVPDEVLVERLT 120

Query: 143 NRNQ-----------------------------GREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET++KR + + + + PV+ Y
Sbjct: 121 GRRIHPNSGRSYHLEFNPPKVPGKDDVTGEPLSQRSDDNEETVKKRLETYHKQTEPVIDY 180

Query: 174 YEAKGK 179
           Y+ KGK
Sbjct: 181 YKKKGK 186

Length = 186

>gnl|CDD|233369 TIGR01351, adk, adenylate kinase

 Score =  167 bits (424), Expect = 3e-52
 Identities = 65/209 (31%), Positives = 109/209 (52%), Gaps = 32/209 (15%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           +V  LG PGSGKGTQ   I E +G  H+S GDLLRAEIK+G+  G   +  +++G++VP 
Sbjct: 2   LVL-LGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPD 60

Query: 83  EVTIKLLQKAMEESG--NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140
           E+  +L+++ + ++    + F++DGFPR      A +A+ K + + V+  D  +EE+  R
Sbjct: 61  EIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVER 120

Query: 141 ILNRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVV 171
           +  R                                REDD  E ++KR +V+ E + P++
Sbjct: 121 LSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLI 180

Query: 172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
            YY+ +G + +ID   P+ EV+  +    
Sbjct: 181 DYYKKRGILVQIDGNGPIDEVWKRILEAL 209

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 210

>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed

 Score =  165 bits (421), Expect = 1e-51
 Identities = 67/206 (32%), Positives = 106/206 (51%), Gaps = 33/206 (16%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I E +G  H+S GD+LRA +K+G+E G   ++ +  G++VP E+ I
Sbjct: 6   LGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVI 65

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            L+++ + +      FL+DGFPR      A + + K   I+ + V+  D  +EE+  R+ 
Sbjct: 66  GLVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLS 125

Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+RKR +V+ + + P++ Y
Sbjct: 126 GRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDY 185

Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAV 199
           Y+ KGK++KID    + EVF  +   
Sbjct: 186 YKKKGKLKKIDGTGSIDEVFADILKA 211

Length = 215

>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]

 Score =  144 bits (366), Expect = 5e-44
 Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 10/179 (5%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + +LG PG+GK T    + +  G  HL  GD+LRA I   +E G  I+  I +G++VP E
Sbjct: 3   ILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDE 62

Query: 84  VTIKLLQKAMEES-GNDKFLIDGFPRN---EENRAAFEAVTKIEPEFVLFFDCSEEEMER 139
           +   L+++ ++E+     F++DGFPR                +  + V+  D  EE +  
Sbjct: 63  IVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLE 122

Query: 140 RILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 198
           R+L R   REDDN ET++KR KV+ E + P+++YY        ID +  + EV   +  
Sbjct: 123 RLLGRR-VREDDNEETVKKRLKVYHEQTAPLIEYYS-----VTIDGSGEIEEVLADILK 175

Length = 178

>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional

 Score =  131 bits (332), Expect = 8e-39
 Identities = 63/181 (34%), Positives = 102/181 (56%), Gaps = 8/181 (4%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + EH    H+S GD+LR  IK  +  G   Q  + +G++VP ++ +
Sbjct: 7   LGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVL 66

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAF--EAVTKI--EPEFVLFFDCSEEEMERRI 141
            L+Q+ +++      +++DGFPR    +AAF  E + +I    E V+  D  ++ +  R+
Sbjct: 67  DLVQERLQQPDAANGWILDGFPRK-VTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERL 125

Query: 142 LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201
           L R  GR+DD  E IR+R +V+ E + P++ YY  + K+  ID  + V  V   +KA   
Sbjct: 126 LAR--GRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALA 183

Query: 202 P 202
           P
Sbjct: 184 P 184

Length = 184

>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional

 Score =  129 bits (325), Expect = 1e-37
 Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 11/192 (5%)

Query: 16  VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK 75
           +T  K  VV  LG PG+GKGTQ   + +  G   LS GD+LR  +  G+E G   + +++
Sbjct: 1   MTQTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIME 60

Query: 76  EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF------VLF 129
            G +VP E+ + L++  +      + + DGFPR     A  EA+ ++  E       V+ 
Sbjct: 61  AGDLVPDELILALIRDELAGMEPVRVIFDGFPRTL---AQAEALDRLLEELGARLLAVVL 117

Query: 130 FDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAK 187
            +  +EE+ RRI+ R   +GR DDN ET+R+R +V+ E + P+V YYEA+G ++++D   
Sbjct: 118 LEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLG 177

Query: 188 PVAEVFDAVKAV 199
              EV+  +   
Sbjct: 178 TPDEVYARILKA 189

Length = 191

>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional

 Score =  117 bits (294), Expect = 4e-33
 Identities = 54/176 (30%), Positives = 96/176 (54%), Gaps = 5/176 (2%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ A +    G  HLS GDLLR+E+ +GS  G   + ++  G++V   + +
Sbjct: 8   LGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVL 67

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILN 143
            +++  ++   +  +L+DGFPR      A E +    K   E V+  +  +  +  R+L 
Sbjct: 68  AIVESQLKALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLA 127

Query: 144 RNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           R  GR DDN   IR R +V+ E + P++ +Y  +G ++ ++A   +  + + ++ V
Sbjct: 128 R--GRADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKV 181

Length = 183

>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional

 Score =  112 bits (281), Expect = 8e-31
 Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 39/210 (18%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-----IKSGSENGTMIQNMIKEGK 78
           + +LG PG+GKGTQ +N+ E FG  H++ GD LRA          +E  T  + M   G+
Sbjct: 6   ILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYM-DAGE 64

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           +VP  V  +++++A+ ++  D F++DG+PRN E     E++T +  + VL+ D SEEE+ 
Sbjct: 65  LVPDAVVNEIVEEALSDA--DGFVLDGYPRNLEQAEYLESITDL--DVVLYLDVSEEELV 120

Query: 139 RRILNR--------------NQ---------------GREDDNVETIRKRFKVFLESSLP 169
            R+  R              NQ                R+DD  ET+R+R  VF E++ P
Sbjct: 121 DRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEP 180

Query: 170 VVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           V+++Y  +G + ++D  +   EV+  ++  
Sbjct: 181 VIEHYRDQGVLVEVDGEQTPDEVWADIQDA 210

Length = 215

>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional

 Score =  111 bits (278), Expect = 1e-30
 Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 10/184 (5%)

Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           G P +GKGTQ   +VE  G   LS GD+LRA I SGSE G  ++ ++  G++V  E+ I 
Sbjct: 7   GPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIA 66

Query: 88  LLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV-----TKIEPEFVLFFDCSEEEMERRI 141
           L+++ + E       + DGFPR      A + +      KI  + V+     +E +  RI
Sbjct: 67  LIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKI--DVVIRLKVDDEALIERI 124

Query: 142 LNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           + R   QGR DDN E    R   +   + P++ YY  +GK+ ++D    +  V  ++ A 
Sbjct: 125 VKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAA 184

Query: 200 FTPK 203
               
Sbjct: 185 LEGV 188

Length = 188

>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional

 Score =  105 bits (262), Expect = 2e-28
 Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 6/175 (3%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           +  +G PG+GKGTQ   + E      +S GD+LR  +K+ +  G   +  +  G +VP  
Sbjct: 4   IIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDS 63

Query: 84  VTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMER 139
           V I +++  + E+   + FL+DGFPR  E   A +A+ K      +  +  +  + E+ +
Sbjct: 64  VVIGIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLK 123

Query: 140 RILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV 192
           R+L R   +GR DDN  TI+ R   + + +LP++ +Y A+ K+ +++    + EV
Sbjct: 124 RLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEV 178

Length = 186

>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase

 Score = 96.8 bits (241), Expect = 1e-24
 Identities = 65/202 (32%), Positives = 89/202 (44%), Gaps = 50/202 (24%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           VF LG PG GKGT  + + +  G  H++ GDL+R EIKS    G  ++ ++ +GK+VP E
Sbjct: 33  VF-LGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDE 91

Query: 84  VTIKLLQK---AMEESGNDKFLIDGFPRNEENRAAFEAVTKIE-------PEFVLFFDCS 133
           +   LL K   A EE G   F++DGFPR        E VT I+        E VL   C 
Sbjct: 92  IIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKC- 150

Query: 134 EEEMERRIL-----NRN------------------------------QGREDDNVETIRK 158
              + RRI      N N                                R DD  E ++ 
Sbjct: 151 ---LGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKA 207

Query: 159 RFKVFLESSLPVVQYYEAKGKV 180
           R +V+ E S PV  +Y  +GK+
Sbjct: 208 RLRVYKEESQPVEDFYRKRGKL 229

Length = 261

>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase

 Score = 98.4 bits (245), Expect = 7e-24
 Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 30/201 (14%)

Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           G P SGKGTQC  IV  FG  H+S GDLLRAE+ +G++ G   +  +  G++VP E+ I 
Sbjct: 4   GAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIA 63

Query: 88  LLQK--AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
           ++    + E++    +L+DG+PR+     + E + KI P+  +  D  +E +  R + R 
Sbjct: 64  MVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEKL-KIRPDIFILLDVPDEILIDRCVGRR 122

Query: 146 QG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
                                      R DD  E ++ R +++ +++  ++  Y     +
Sbjct: 123 LDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSD--IM 180

Query: 181 RKIDAAKPVAEVFDAVKAVFT 201
            KID  +P   VF+ + ++ +
Sbjct: 181 VKIDGNRPKEVVFEEISSLLS 201

Length = 505

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score = 88.0 bits (218), Expect = 1e-20
 Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 12/179 (6%)

Query: 26  VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT 85
           +LG PG+GKGTQ   +V+ +G   LS GD+LRA + +G+  G   ++++  G +VP EV 
Sbjct: 5   LLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVV 64

Query: 86  IKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSE----EEM 137
           + ++   +E+    + F++DGFPR      A +A+ K   ++ + V+    +E      +
Sbjct: 65  VGIISDRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARV 124

Query: 138 ERRILN-RNQG---REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV 192
           E R+   R +G   R DD  E + KR   +   + P+V YY  K K+  +D    + EV
Sbjct: 125 ETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEV 183

Length = 333

>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional

 Score = 84.5 bits (209), Expect = 2e-20
 Identities = 60/201 (29%), Positives = 102/201 (50%), Gaps = 35/201 (17%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           +VF LG PGSGKGT    +     Y H+S GDL R  I + +  G  I+ +++ G++VP 
Sbjct: 3   LVF-LGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPD 61

Query: 83  EVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEF-VLFFDCSEEEMERR 140
            +TIK+++  +     ND F++DGFPRN  N+A  +A+ K  P   ++ F   EE + +R
Sbjct: 62  SITIKIVEDKINTIKNNDNFILDGFPRN-INQA--KALDKFLPNIKIINFLIDEELLIKR 118

Query: 141 ILNRN-------------------------QG----REDDNVETIRKRFKVFLESSLPVV 171
           +  R                          +G    R+DD  E+++ R + +   + P++
Sbjct: 119 LSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLI 178

Query: 172 QYYEAKGKVRKIDAAKPVAEV 192
           ++Y    ++  IDA+K + EV
Sbjct: 179 EFYSKCNRLNNIDASKDIDEV 199

Length = 211

>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase

 Score = 82.6 bits (204), Expect = 3e-19
 Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 37/213 (17%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + ++G PGSGKGTQ   I + +   HL+ GD+LRA + + +  G   +  + +G++V  +
Sbjct: 34  LILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 93

Query: 84  VTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAV-----TKIEPEFVLFFDCSEEEM 137
           + + ++ +AM++    K F++DGFPR        + +      KI+   VL F   +  +
Sbjct: 94  LVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDK--VLNFAIDDAIL 151

Query: 138 ERRILNR----NQG-------------------------REDDNVETIRKRFKVFLESSL 168
           E RI  R    + G                         R+DD    ++ R + F + + 
Sbjct: 152 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 211

Query: 169 PVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201
           PV+ YY  KG V  + A KP  EV   V+   +
Sbjct: 212 PVIDYYAKKGVVANLHAEKPPKEVTAEVQKALS 244

Length = 244

>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional

 Score = 72.1 bits (177), Expect = 1e-15
 Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 48/205 (23%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           +K P  + + G PG GKGT    + +     H++ G++LR EIK+ +  G  IQ ++  G
Sbjct: 3   LKGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSG 62

Query: 78  KIVPSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS- 133
            +VP  + I +++  + +  +D    F++DGFPRN +       +T I+    LF +   
Sbjct: 63  NLVPDNLVIAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKITNID----LFVNIYL 118

Query: 134 ------EEEMERRILN---RN-------------------------------QGREDDNV 153
                 ++ + RRI N   RN                               Q R DD  
Sbjct: 119 PRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQKRSDDTE 178

Query: 154 ETIRKRFKVFLESSLPVVQYYEAKG 178
           E +  R   +  ++ P++Q+++ + 
Sbjct: 179 EIVAHRLNTYESTNSPIIQFFKNEN 203

Length = 229

>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional

 Score = 69.4 bits (170), Expect = 2e-14
 Identities = 40/132 (30%), Positives = 74/132 (56%), Gaps = 3/132 (2%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + + G  GSGKGTQ A + + +   H+ +G + R  I  G+E G   +  I  G +VP +
Sbjct: 3   ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDD 62

Query: 84  VTIKLLQKAMEESGNDKFLIDGFPRN-EENRAAFEAVTK--IEPEFVLFFDCSEEEMERR 140
           +TI ++ + +++ G + +L+DGFPRN  +    +EA+ K  ++ ++V+      E  + R
Sbjct: 63  ITIPMILETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNR 122

Query: 141 ILNRNQGREDDN 152
           I+ R   + D+N
Sbjct: 123 IMGRRLCKNDNN 134

Length = 223

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 51.9 bits (124), Expect = 5e-09
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 12/126 (9%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           ++ + G PGSGK T    + E  G   +S  DLLR E  +  ++G +             
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGEL----------DDI 50

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
           ++ ++LL++ ++E    +++IDG   +       EA   +     L        + +R L
Sbjct: 51  DIDLELLEEILDELAKQEWVIDGVRESTLELRLEEADLVV--FLDLPLPACRFRLLKRRL 108

Query: 143 NRNQGR 148
            R +G 
Sbjct: 109 QRGRGE 114

Length = 114

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 30/147 (20%), Positives = 61/147 (41%), Gaps = 13/147 (8%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           ++ ++G PGSGK T    ++   G   LS+ D LR  ++ G     +       G++   
Sbjct: 1   LILMVGLPGSGKSTFARRLLRELGAVVLSS-DTLRKRLR-GDGPPDISYYARASGRVY-- 56

Query: 83  EVTIKLLQKAMEESGNDKFLID-GFPRNEENRAAFEAVTKIE--PEFVLFFDCSEEEMER 139
           +  ++L ++A+  +G    ++D      EE RA    + +    P  +++ +  EE +  
Sbjct: 57  QRLLELAREAL-RAGRP-VIVDATNLSREE-RARLIDLARRYGAPVRIVYLEAPEEVLRE 113

Query: 140 RILNRNQGREDD---NVETIRKRFKVF 163
           R   R +   D        + +    F
Sbjct: 114 RNAQRERSGGDPSDVPEAVLDRMLARF 140

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|222000 pfam13238, AAA_18, AAA domain

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 29/142 (20%), Positives = 46/142 (32%), Gaps = 18/142 (12%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + + G PGSGK T    + E  G        +LR   K       + + +  E K +  +
Sbjct: 1   ILITGTPGSGKTTLAKELAERLGD-------VLRDLAKENGLVLELDEEITDESKRLDED 53

Query: 84  VTIKLLQKAMEESGNDK----FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER 139
              KLL K  +           +IDG     E     + V        +      EE+  
Sbjct: 54  KLAKLLDKLEKIIEELAEGENVIIDGHLAELELERFKDLV-------FVVLRADPEELLE 106

Query: 140 RILNRNQGREDDNVETIRKRFK 161
           R+  R    E  +     +  K
Sbjct: 107 RLKKRGYSEEKISENDEAEILK 128

Length = 128

>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 40/142 (28%)

Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTM--IQNMIKEGKIVPSEV 84
           G  GSGK T    + +  G  +L  G +   E+ K  SE   +  ++  + E        
Sbjct: 6   GPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIPEVRKALDE-------- 57

Query: 85  TIKLLQKAMEESGNDKFLIDG-------FPRNEENRAAFEAVTKIEPEFVLFFDCSEEE- 136
                Q+ + +      +++G       FP         +A  KI      F   S E  
Sbjct: 58  ----RQRELAKKPG--IVLEGRDIGTVVFP---------DADLKI------FLTASPEVR 96

Query: 137 MERRILNRNQGREDDNVETIRK 158
            +RR        E  ++E I  
Sbjct: 97  AKRRAKQLQAKGEGVDLEEILA 118

Length = 147

>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 28 GGPGSGKGTQCANIVEHFGYTHLSAGDLLR 57
          G PGSGK T    + E  G  H+SAG++ R
Sbjct: 7  GPPGSGKTTVARLLAEKLGLKHVSAGEIFR 36

Length = 180

>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR 57
          V+ + G PGSGK T    + EH G   +SAG + R
Sbjct: 2  VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFR 36

Length = 179

>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 73/221 (33%)

Query: 28  GGPGSGKGTQCANIVEHF-------------GYTHLSAGDLLRAEIKSGSEN------GT 68
           G  G+GK TQ   + E               G T    G+ +R  + +G E         
Sbjct: 10  GIDGAGKTTQAELLKERLEERGIKVVLTREPGGT--PIGEKIRELLLNGEEKLSPKAEAL 67

Query: 69  M------------IQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI-----DGFPRNEE 111
           +            I+  +KEGK+V                  D+++       G  R  +
Sbjct: 68  LFAADRAQHLEEVIKPALKEGKVVIC----------------DRYVDSSLAYQGGGRGLD 111

Query: 112 NRAAFE----AVTKIEPEFVLFFDCSEEEMERRILNRNQGR------EDDNVETIRKRFK 161
                     A   ++P+  L+ D   E    RI  R + R      +D+ +E +R+ + 
Sbjct: 112 LDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKEDDEFLEKVREGYL 171

Query: 162 VFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202
                        +   ++  IDA++P+ EV + +  +   
Sbjct: 172 ELAA---------KFPERIIVIDASRPLEEVHEEILKILKE 203

Length = 208

>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 36/216 (16%), Positives = 64/216 (29%), Gaps = 69/216 (31%)

Query: 28  GGPGSGKGTQCANIVEHF---GYTHL--------SAGDLLRAEIKSGSENG--------- 67
           G  G+GK T    + E     GY  +          G+ +R  +    +           
Sbjct: 7   GIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLL 66

Query: 68  ----------TMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLID-----GFPRNEEN 112
                      +I+  +  GKIV S                D+F+       G  R    
Sbjct: 67  FAADRAQHVEEVIKPALARGKIVLS----------------DRFVDSSLAYQGAGRGLGE 110

Query: 113 RAAFE----AVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV-----ETIRKRFKVF 163
                    A   ++P+  +  D   E    RI  R +   D+       E +R+ +   
Sbjct: 111 ALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEFHERVREGYLEL 170

Query: 164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
                      +   ++  IDA++P+ EV   +   
Sbjct: 171 AA---------QEPERIIVIDASQPLEEVLAEILKA 197

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP). Length = 200

>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR 57
          ++ + G PGSGK T    + E      +SAGD+ R
Sbjct: 2  IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFR 36

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	100.0
PLN02674	244	adenylate kinase	100.0
PRK14531	183	adenylate kinase; Provisional	100.0
PLN02459	261	probable adenylate kinase	100.0
PLN02200	234	adenylate kinase family protein	100.0
PRK13808	333	adenylate kinase; Provisional	100.0
PRK14532	188	adenylate kinase; Provisional	100.0
PRK14527	191	adenylate kinase; Provisional	100.0
PRK14528	186	adenylate kinase; Provisional	100.0
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	100.0
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	100.0
PRK14529	223	adenylate kinase; Provisional	100.0
PRK00279	215	adk adenylate kinase; Reviewed	99.97
PRK02496	184	adk adenylate kinase; Provisional	99.97
PRK14526	211	adenylate kinase; Provisional	99.97
PTZ00088	229	adenylate kinase 1; Provisional	99.97
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.97
PRK14530	215	adenylate kinase; Provisional	99.96
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.96
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.96
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.95
PLN02842	505	nucleotide kinase	99.95
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	99.91
PRK01184	184	hypothetical protein; Provisional	99.86
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.83
PRK13973	213	thymidylate kinase; Provisional	99.82
PRK03839	180	putative kinase; Provisional	99.8
PRK06762	166	hypothetical protein; Provisional	99.79
PRK04040	188	adenylate kinase; Provisional	99.79
PRK06217	183	hypothetical protein; Validated	99.79
PRK13975	196	thymidylate kinase; Provisional	99.78
PHA02530	300	pseT polynucleotide kinase; Provisional	99.76
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.76
PRK13949	169	shikimate kinase; Provisional	99.76
PLN02924	220	thymidylate kinase	99.76
PRK13974	212	thymidylate kinase; Provisional	99.75
PRK08233	182	hypothetical protein; Provisional	99.75
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.75
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.74
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.74
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.74
PRK04182	180	cytidylate kinase; Provisional	99.74
PRK08356	195	hypothetical protein; Provisional	99.74
PRK00131	175	aroK shikimate kinase; Reviewed	99.74
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.73
PRK13948	182	shikimate kinase; Provisional	99.73
PRK00698	205	tmk thymidylate kinase; Validated	99.73
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.72
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.72
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.71
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	99.71
PRK13946	184	shikimate kinase; Provisional	99.71
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.71
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.71
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.71
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.7
PRK08118	167	topology modulation protein; Reviewed	99.7
PRK13947	171	shikimate kinase; Provisional	99.7
PRK03731	171	aroL shikimate kinase II; Reviewed	99.69
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.69
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	99.69
PRK07933	213	thymidylate kinase; Validated	99.69
PRK05057	172	aroK shikimate kinase I; Reviewed	99.68
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.68
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.67
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.66
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	99.66
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.66
PLN02422	232	dephospho-CoA kinase	99.66
PRK00625	173	shikimate kinase; Provisional	99.66
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.66
PTZ00451	244	dephospho-CoA kinase; Provisional	99.64
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.64
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.64
PRK13976	209	thymidylate kinase; Provisional	99.64
PRK12338	319	hypothetical protein; Provisional	99.64
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.63
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.63
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.63
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.61
PRK14737	186	gmk guanylate kinase; Provisional	99.61
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.61
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.61
PLN02199	303	shikimate kinase	99.61
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.6
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	99.6
PRK05480	209	uridine/cytidine kinase; Provisional	99.59
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.59
PRK05541	176	adenylylsulfate kinase; Provisional	99.59
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.59
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.58
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.58
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.58
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.58
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.57
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.57
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	99.57
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	99.57
PRK14738	206	gmk guanylate kinase; Provisional	99.56
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.56
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.55
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	99.55
PRK09825	176	idnK D-gluconate kinase; Provisional	99.54
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.54
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.54
PRK00023	225	cmk cytidylate kinase; Provisional	99.54
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	99.53
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.53
PRK07261	171	topology modulation protein; Provisional	99.52
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.52
PRK06547	172	hypothetical protein; Provisional	99.51
PRK11545	163	gntK gluconate kinase 1; Provisional	99.5
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.48
PRK04220	301	2-phosphoglycerate kinase; Provisional	99.48
PTZ00301	210	uridine kinase; Provisional	99.47
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.46
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.46
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.45
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.45
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	99.45
PRK00300	205	gmk guanylate kinase; Provisional	99.45
PRK00889	175	adenylylsulfate kinase; Provisional	99.44
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.44
PRK06696	223	uridine kinase; Validated	99.44
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	99.43
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.42
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.4
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.4
PRK12337	475	2-phosphoglycerate kinase; Provisional	99.4
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.39
PRK03846	198	adenylylsulfate kinase; Provisional	99.39
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	99.38
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.38
PRK07667	193	uridine kinase; Provisional	99.38
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.36
PLN02348	395	phosphoribulokinase	99.34
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	99.34
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	99.33
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	99.32
COG0645	170	Predicted kinase [General function prediction only	99.32
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	99.31
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.28
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.28
PLN02772	398	guanylate kinase	99.28
COG3709	192	Uncharacterized component of phosphonate metabolis	99.27
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	99.27
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	99.27
KOG3308	225	consensus Uncharacterized protein of the uridine k	99.27
PRK15453	290	phosphoribulokinase; Provisional	99.24
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	99.24
PHA03132	580	thymidine kinase; Provisional	99.24
PRK07429	327	phosphoribulokinase; Provisional	99.23
COG4639	168	Predicted kinase [General function prediction only	99.23
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	99.23
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	99.23
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	99.22
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.22
COG1660	286	Predicted P-loop-containing kinase [General functi	99.2
PRK05439	311	pantothenate kinase; Provisional	99.19
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	99.18
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	99.11
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	99.07
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	99.07
PLN02318	656	phosphoribulokinase/uridine kinase	99.05
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	99.05
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	99.03
PHA00729	226	NTP-binding motif containing protein	98.96
PHA03136	378	thymidine kinase; Provisional	98.95
KOG3062	281	consensus RNA polymerase II elongator associated p	98.86
PLN02165	334	adenylate isopentenyltransferase	98.85
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	98.85
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	98.8
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	98.72
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	98.71
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	98.66
PRK06761	282	hypothetical protein; Provisional	98.6
PHA03135	343	thymidine kinase; Provisional	98.59
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	98.58
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.55
PHA03134	340	thymidine kinase; Provisional	98.53
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.5
PHA03138	340	thymidine kinase; Provisional	98.49
PF00004	132	AAA: ATPase family associated with various cellula	98.43
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.43
PLN02840	421	tRNA dimethylallyltransferase	98.42
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	98.42
PF13173	128	AAA_14: AAA domain	98.4
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	98.39
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.38
PRK08099	399	bifunctional DNA-binding transcriptional repressor	98.38
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.37
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	98.33
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	98.29
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	98.28
PLN02748	468	tRNA dimethylallyltransferase	98.28
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	98.26
PF01712	146	dNK: Deoxynucleoside kinase; InterPro: IPR002624 T	98.24
PRK09087	226	hypothetical protein; Validated	98.23
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	98.22
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.21
PF05729	166	NACHT: NACHT domain	98.2
PRK14974	336	cell division protein FtsY; Provisional	98.2
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	98.18
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.18
smart00382	148	AAA ATPases associated with a variety of cellular	98.17
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.16
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	98.16
KOG4622	291	consensus Predicted nucleotide kinase [General fun	98.16
PHA03133	368	thymidine kinase; Provisional	98.16
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	98.15
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	98.15
PLN02796	347	D-glycerate 3-kinase	98.14
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	98.14
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	98.12
TIGR00959	428	ffh signal recognition particle protein. This mode	98.11
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.11
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	98.11
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.1
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.1
KOG0780	483	consensus Signal recognition particle, subunit Srp	98.1
PLN03046	460	D-glycerate 3-kinase; Provisional	98.08
CHL00181	287	cbbX CbbX; Provisional	98.08
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.08
PRK10867	433	signal recognition particle protein; Provisional	98.08
TIGR01223	182	Pmev_kin_anim phosphomevalonate kinase, animal typ	98.08
COG4240	300	Predicted kinase [General function prediction only	98.06
COG3911	183	Predicted ATPase [General function prediction only	98.02
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	98.02
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.01
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	98.01
CHL00195	489	ycf46 Ycf46; Provisional	98.01
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.0
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	97.99
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.98
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.98
PRK06620	214	hypothetical protein; Validated	97.98
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.97
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.97
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.96
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.95
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	97.95
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.95
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.95
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.95
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.94
PRK09169	2316	hypothetical protein; Validated	97.94
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	97.94
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.93
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	97.93
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.92
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	97.92
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.91
PF13245	76	AAA_19: Part of AAA domain	97.9
PF07726	131	AAA_3: ATPase family associated with various cellu	97.9
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.89
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.89
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.89
PRK04328	249	hypothetical protein; Provisional	97.88
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	97.88
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.88
COG1855	604	ATPase (PilT family) [General function prediction	97.88
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.88
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.85
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.85
PRK06067	234	flagellar accessory protein FlaH; Validated	97.84
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.83
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.83
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.83
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.82
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.81
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.81
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.81
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	97.81
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.8
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.8
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.8
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.8
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.8
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	97.79
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.79
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.78
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.78
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.78
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.77
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.77
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	97.77
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.77
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	97.77
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.76
PRK12377	248	putative replication protein; Provisional	97.76
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	97.75
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.75
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.75
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.75
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.75
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.74
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.74
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	97.74
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.74
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.74
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	97.73
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.72
PRK10416	318	signal recognition particle-docking protein FtsY;	97.72
PRK04195	482	replication factor C large subunit; Provisional	97.72
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	97.72
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.71
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.71
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.71
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.7
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	97.7
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.7
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.7
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	97.68
PRK10646	153	ADP-binding protein; Provisional	97.68
COG0802	149	Predicted ATPase or kinase [General function predi	97.68
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	97.68
PRK13695	174	putative NTPase; Provisional	97.68
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.68
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.68
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	97.68
PRK14088	440	dnaA chromosomal replication initiation protein; P	97.67
KOG1969	877	consensus DNA replication checkpoint protein CHL12	97.67
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.67
KOG1533	290	consensus Predicted GTPase [General function predi	97.67
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.67
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.67
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.66
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.66
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	97.65
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.65
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	97.65
PHA02244	383	ATPase-like protein	97.65
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.64
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	97.64
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.64
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	97.63
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	97.63
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	97.63
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.63
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	97.63
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.63
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.63
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.62
PRK13342	413	recombination factor protein RarA; Reviewed	97.62
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	97.62
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.62
PF00693	281	Herpes_TK: Thymidine kinase from herpesvirus; Inte	97.62
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.62
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.62
KOG0234	438	consensus Fructose-6-phosphate 2-kinase/fructose-2	97.62
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	97.62
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.62
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	97.61
PRK12422	445	chromosomal replication initiation protein; Provis	97.61
KOG2170	344	consensus ATPase of the AAA+ superfamily [General	97.61
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.6
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.6
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	97.6
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.59
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.59
PRK09354	349	recA recombinase A; Provisional	97.59
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.59
cd03116	159	MobB Molybdenum is an essential trace element in t	97.58
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.58
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.58
PRK08084	235	DNA replication initiation factor; Provisional	97.57
PRK13768	253	GTPase; Provisional	97.57
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.57
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	97.57
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.57
PRK15455	644	PrkA family serine protein kinase; Provisional	97.57
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.57
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.57
PRK14086	617	dnaA chromosomal replication initiation protein; P	97.57
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.56
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.56
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.56
PRK06893	229	DNA replication initiation factor; Validated	97.56
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.56
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.55
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.55
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	97.55
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.55
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.54
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	97.54
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.54
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.54
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.54
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.54
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.54
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.54
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.54
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	97.54
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.53
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.53
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.53
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.53
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	97.53
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.53
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	97.53
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.52
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	97.52
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.52
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	97.52
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.52
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.51
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	97.51
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.51
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.51
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.51
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.51
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.51
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.51
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.51
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	97.5
CHL00176	638	ftsH cell division protein; Validated	97.5
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.5
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.5
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	97.5
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.5
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	97.5
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	97.5
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.5
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.49
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.49
PRK12402	337	replication factor C small subunit 2; Reviewed	97.49
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.49
PRK04296	190	thymidine kinase; Provisional	97.49
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.49
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	97.49
COG1127	263	Ttg2A ABC-type transport system involved in resist	97.49
PRK07940	394	DNA polymerase III subunit delta'; Validated	97.49
PHA02624	647	large T antigen; Provisional	97.48
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.48
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.48
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.48
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.48
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.48
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.48
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.47
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.47
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.47
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.47
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.47
PLN03025	319	replication factor C subunit; Provisional	97.47
cd03246	173	ABCC_Protease_Secretion This family represents the	97.47
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	97.46
KOG0609	542	consensus Calcium/calmodulin-dependent serine prot	97.46
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.46
PRK08181	269	transposase; Validated	97.46
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.46
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	97.46
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.46
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	97.46
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.45
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.45
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.45
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.45
PRK10908	222	cell division protein FtsE; Provisional	97.44
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.44
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	97.44
PHA02544	316	44 clamp loader, small subunit; Provisional	97.44
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.43
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	97.43
PRK09183	259	transposase/IS protein; Provisional	97.43
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.43
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.43
cd03234	226	ABCG_White The White subfamily represents ABC tran	97.43
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.43
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	97.43
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.43
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	97.43
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	97.43
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	97.43
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	97.42
KOG2878	282	consensus Predicted kinase [General function predi	97.42
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	97.42
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	97.42
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	97.42
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.42
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	97.42
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.42
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	97.42
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	97.42
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.42
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.42
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.41
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.41
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.41
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	97.41
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.41
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	97.41
PRK13764	602	ATPase; Provisional	97.41
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	97.41
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.41
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	97.41
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	97.41
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	97.41
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.41
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	97.41

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=6.6e-35  Score=200.82  Aligned_cols=185  Identities=55%  Similarity=1.006  Sum_probs=172.8

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc-CCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (215)
                      .+.++++|++.|+|||||-|.|.+++++++|.|++.||++|+...+ +++.+..+.+++.+|..+|.+...++++.++.+
T Consensus         4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~   83 (195)
T KOG3079|consen    4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS   83 (195)
T ss_pred             cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence            4567899999999999999999999999999999999999999999 999999999999999999999999999999988


Q ss_pred             cCC-CeEEEeCCCCCHHHHHHHHHhcCC-CCcEEEEEecCHHHHHHHHhhccCC--CCCCcHHHHHHHHHHHhhcchhHH
Q 028025           96 SGN-DKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQG--REDDNVETIRKRFKVFLESSLPVV  171 (215)
Q Consensus        96 ~~~-~~~iidg~~~~~~~~~~~~~~~~~-~~~~~i~L~~~~e~~~~R~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~  171 (215)
                      ... .++++||||++.++...|.. ... .+++++|++|+.|++.+|+..|.++  |.+++.+.+.+|++.|.....|++
T Consensus        84 ~~~~~~fLIDGyPR~~~q~~~fe~-~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi  162 (195)
T KOG3079|consen   84 SGDSNGFLIDGYPRNVDQLVEFER-KIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVI  162 (195)
T ss_pred             cCCCCeEEecCCCCChHHHHHHHH-HhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHH
Confidence            774 45999999999999999998 555 7999999999999999999999333  899999999999999999999999


Q ss_pred             HHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       172 ~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      ++|+..+.+..+|++.+++++++.+.+.+..
T Consensus       163 ~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  163 EYYEKKGKLLKINAERSVDDVFEEVVTAIDA  193 (195)
T ss_pred             HHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999999999999988764

>PLN02674 adenylate kinase

Probab=100.00  E-value=3.1e-33  Score=206.62  Aligned_cols=183  Identities=30%  Similarity=0.574  Sum_probs=167.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (215)
                      ...++.|+|.|+|||||||+|+.|++++|+.+++.|+++|..+..+++.+..+...+..|..+|++....++.+++....
T Consensus        28 ~~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~  107 (244)
T PLN02674         28 SKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS  107 (244)
T ss_pred             cccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcC
Confidence            34467899999999999999999999999999999999999999999999999999999999999999999999997765


Q ss_pred             -CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc----cC-----------------------
Q 028025           98 -NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR----NQ-----------------------  146 (215)
Q Consensus        98 -~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r----~~-----------------------  146 (215)
                       ..++|+||||++..+...|...   .+..++.+|+|++|.+++.+|+..|    ..                       
T Consensus       108 ~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~  187 (244)
T PLN02674        108 CQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP  187 (244)
T ss_pred             cCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCc
Confidence             6899999999999999988763   3568999999999999999999988    11                       


Q ss_pred             --CCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhh
Q 028025          147 --GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       147 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l  200 (215)
                        .|.++..+.+.+|+..|.+...++.++|...+.++.+|++.+++++++.|...+
T Consensus       188 L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l  243 (244)
T PLN02674        188 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL  243 (244)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence              267888999999999999999999999999888999999999999999998876

>PRK14531 adenylate kinase; Provisional

Probab=100.00  E-value=7.1e-32  Score=194.40  Aligned_cols=178  Identities=30%  Similarity=0.612  Sum_probs=161.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (215)
                      ++.|+|+|+|||||||+++.|++.+|+.+++.+++++..+..+++.+.....++..|...+++....++...+....+.+
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g   81 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGG   81 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCc
Confidence            45799999999999999999999999999999999999988888888888888999999999999999988887645778


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (215)
                      +|+||||.+..+...|...   ....++.+|+|++|++++.+|+..|  ++.++..+.+.+|+..|+....++.++|...
T Consensus        82 ~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R--~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~  159 (183)
T PRK14531         82 WLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLAR--GRADDNEAVIRNRLEVYREKTAPLIDHYRQR  159 (183)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999988877653   3456788999999999999999998  8888889999999999999999999999988


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhh
Q 028025          178 GKVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       178 ~~~~~id~~~~~~e~~~~i~~~l  200 (215)
                      +.+..+|++.+++++++.|.+.|
T Consensus       160 ~~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        160 GLLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh
Confidence            88999999999999999998876

>PLN02459 probable adenylate kinase

Probab=100.00  E-value=9.5e-32  Score=199.44  Aligned_cols=191  Identities=30%  Similarity=0.586  Sum_probs=172.4

Q ss_pred             ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028025           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (215)
Q Consensus        13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (215)
                      ..++..++++.|+|.|+|||||||+|+.|++.+|+.+++.++++|..+..+++.+..+..++..|..+|++++..++..+
T Consensus        21 ~~~~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~  100 (261)
T PLN02459         21 DRSLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKR  100 (261)
T ss_pred             cCCccccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHH
Confidence            45555567788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcc---CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc----cC-------------------
Q 028025           93 MEES---GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----NQ-------------------  146 (215)
Q Consensus        93 ~~~~---~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r----~~-------------------  146 (215)
                      +.+.   ...++|+||||++..+...|.. . ..++.+|+|+++.+++.+|+..|    ..                   
T Consensus       101 l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~-~-~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~  178 (261)
T PLN02459        101 LEAGEEEGESGFILDGFPRTVRQAEILEG-V-TDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPG  178 (261)
T ss_pred             HhcccccCCceEEEeCCCCCHHHHHHHHh-c-CCCCEEEEEECCHHHHHHHhhccccccccCcccccccccccccccccc
Confidence            8764   2689999999999999999986 3 46899999999999999999987    10                   


Q ss_pred             -----------------CCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025          147 -----------------GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       147 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                                       +|.++..+.+.+|+..|.+...++.++|...+.++.+|++++++++++.|...|.....
T Consensus       179 ~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~~  254 (261)
T PLN02459        179 IVMPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDDE  254 (261)
T ss_pred             ccCCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhhh
Confidence                             46778899999999999999999999999999999999999999999999999875433

>PLN02200 adenylate kinase family protein

Probab=100.00  E-value=1.4e-31  Score=198.80  Aligned_cols=190  Identities=63%  Similarity=1.036  Sum_probs=168.2

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (215)
                      .+.+..|++|+|.|+|||||||+|+.|++++|+.+++.++++++.+....+.+..+...+..|...+++....++...+.
T Consensus        37 ~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~  116 (234)
T PLN02200         37 SSKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEME  116 (234)
T ss_pred             CccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Confidence            34455688999999999999999999999999999999999999988888888888888899999999988888888887


Q ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHH
Q 028025           95 ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY  174 (215)
Q Consensus        95 ~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (215)
                      ...+.++|+||||.+..++..+.+.....||.+|+|+++++++.+|+.+|..++.++..+.+.+|+..|.....++.++|
T Consensus       117 ~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y  196 (234)
T PLN02200        117 SSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYY  196 (234)
T ss_pred             cCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            65567899999999998888887634457999999999999999999988556677888999999999999999999999


Q ss_pred             HhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025          175 EAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (215)
Q Consensus       175 ~~~~~~~~id~~~~~~e~~~~i~~~l~~~~  204 (215)
                      ...+.++.||++.+++++++.|.+.+....
T Consensus       197 ~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~  226 (234)
T PLN02200        197 SKKGKLYTINAVGTVDEIFEQVRPIFAACE  226 (234)
T ss_pred             HhcCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            888889999999999999999999987654

>PRK13808 adenylate kinase; Provisional

Probab=100.00  E-value=1.3e-31  Score=205.24  Aligned_cols=184  Identities=29%  Similarity=0.581  Sum_probs=165.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  100 (215)
                      +.|+|.|||||||||+++.|++.||+.+++.||+++..+..+++.+..+..++..|..+|++++..++.+.+.... ..+
T Consensus         1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G   80 (333)
T PRK13808          1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG   80 (333)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence            4689999999999999999999999999999999999998999999999999999999999999999999887654 679


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc-c-------CCCCCCcHHHHHHHHHHHhhcchh
Q 028025          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR-N-------QGREDDNVETIRKRFKVFLESSLP  169 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r-~-------~~~~~~~~~~~~~~~~~~~~~~~~  169 (215)
                      ||+||||++.++...|..+   ....||++|+|++|++++.+|+..| .       ..+.++..+.+.+|+..|+....+
T Consensus        81 ~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~P  160 (333)
T PRK13808         81 FILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEP  160 (333)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHH
Confidence            9999999999999887653   4568999999999999999999987 1       146778899999999999999999


Q ss_pred             HHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025          170 VVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       170 ~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                      +.++|.+.+.++.||++.++++++++|...|.....
T Consensus       161 Ll~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~  196 (333)
T PRK13808        161 LVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGA  196 (333)
T ss_pred             HHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence            999999888899999999999999999999875543

>PRK14532 adenylate kinase; Provisional

Probab=100.00  E-value=5.7e-31  Score=190.84  Aligned_cols=180  Identities=31%  Similarity=0.596  Sum_probs=161.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCeE
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF  101 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  101 (215)
                      .|+|.|+|||||||+|+.|++++|+.+++.|++++..+..+++.+..+...+..|..++++....++...+.... +.++
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~   81 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGA   81 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence            589999999999999999999999999999999999988888888888888999999999999999988886654 7899


Q ss_pred             EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028025          102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (215)
                      |+||||.+..+...+..+   ....||.+|+|++|++++.+|+.+|  ..+++++..+.+.+|+..|+....++.++|.+
T Consensus        82 vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~  161 (188)
T PRK14532         82 IFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAG  161 (188)
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999988877543   4568999999999999999999988  35678888889999999999999998899988


Q ss_pred             cCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          177 KGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       177 ~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      .+.++.+|++.++++++++|...+..
T Consensus       162 ~~~~~~id~~~~~eev~~~I~~~l~~  187 (188)
T PRK14532        162 QGKLTEVDGMGSIEAVAASIDAALEG  187 (188)
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            77789999999999999999988753

>PRK14527 adenylate kinase; Provisional

Probab=100.00  E-value=5.4e-31  Score=191.21  Aligned_cols=183  Identities=33%  Similarity=0.651  Sum_probs=164.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (215)
                      ..++.+|+|.|+|||||||+|+.|++++++.+++.|++++.....+.+.+.....++..+...+++....++.+.+....
T Consensus         3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~   82 (191)
T PRK14527          3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME   82 (191)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence            45788999999999999999999999999999999999999888888888888888899999999999999999887655


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHHH
Q 028025           98 NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQ  172 (215)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (215)
                      +.++|+||||.+..+...+..+   .+..++.+++|++|++++.+|+.+|  ..++.++..+.+.+|+..|.....++.+
T Consensus        83 ~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~  162 (191)
T PRK14527         83 PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVD  162 (191)
T ss_pred             CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHH
Confidence            6689999999998888766653   4567888999999999999999999  4568888899999999999999999999


Q ss_pred             HHHhcCcEEEEcCCCCHHHHHHHHHHhh
Q 028025          173 YYEAKGKVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       173 ~~~~~~~~~~id~~~~~~e~~~~i~~~l  200 (215)
                      +|.+.+.++.||++.++++++++|...+
T Consensus       163 ~y~~~~~~~~id~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        163 YYEARGHLKRVDGLGTPDEVYARILKAL  190 (191)
T ss_pred             HHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence            9999888999999999999999998765

>PRK14528 adenylate kinase; Provisional

Probab=100.00  E-value=7.4e-31  Score=189.20  Aligned_cols=179  Identities=28%  Similarity=0.590  Sum_probs=162.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  100 (215)
                      +.|+|.|+|||||||+|+.|++.+|+.+++.|++++..+..+.+.+..+..++..|...++.....++.+.+.... ..+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g   81 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG   81 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence            4689999999999999999999999999999999999998888888888999999999999998888988887654 678


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (215)
                      +|+||||.+..+...+..+   ....+|.+|+|++|++++.+|+..|  ..++.++..+.+.+|+..|+....++.++|.
T Consensus        82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~  161 (186)
T PRK14528         82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYA  161 (186)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence            9999999999998887763   3467999999999999999999998  5678888999999999999999999999999


Q ss_pred             hcCcEEEEcCCCCHHHHHHHHHHhh
Q 028025          176 AKGKVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       176 ~~~~~~~id~~~~~~e~~~~i~~~l  200 (215)
                      ..+.++.+|++.++++++..|.+.+
T Consensus       162 ~~~~~~~i~~~~~~~~v~~~~~~~~  186 (186)
T PRK14528        162 AQKKLSQVNGVGSLEEVTSLIQKEL  186 (186)
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHhC
Confidence            9999999999999999999987653

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=100.00  E-value=8.4e-31  Score=189.29  Aligned_cols=178  Identities=66%  Similarity=1.105  Sum_probs=158.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEE
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (215)
                      +|+|.|+|||||||+|+.|++++|+.+++.+|+++..+..+++.+..+..++.+|...+++....++...+....+.++|
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v   80 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL   80 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence            48999999999999999999999999999999999998877788888888899999999999999999888765578899


Q ss_pred             EeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcC
Q 028025          103 IDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG  178 (215)
Q Consensus       103 idg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (215)
                      +||||.+..+...|..+  ....|+.+|+|++|++++.+|+.+|  ..++.++..+.+.+|+..|.....++.++|...+
T Consensus        81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~  160 (183)
T TIGR01359        81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKG  160 (183)
T ss_pred             EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999888877763  3357999999999999999999998  2356667788999999999999999999898877


Q ss_pred             cEEEEcCCCCHHHHHHHHHHhh
Q 028025          179 KVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       179 ~~~~id~~~~~~e~~~~i~~~l  200 (215)
                      .++.||++.+++++++.|.+.+
T Consensus       161 ~~~~Id~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       161 KVKEINAEGSVEEVFEDVEKIF  182 (183)
T ss_pred             CEEEEECCCCHHHHHHHHHHHh
Confidence            7899999999999999998876

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>TIGR01351 adk adenylate kinases

Probab=100.00  E-value=2.3e-30  Score=190.59  Aligned_cols=177  Identities=36%  Similarity=0.696  Sum_probs=160.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC--CCeE
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--NDKF  101 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  101 (215)
                      |+|.|+|||||||+|+.|++++|+.+++.+|+++..+...++.+..+...+..|..++++.+..++...+....  +.++
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~   81 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF   81 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence            89999999999999999999999999999999999988888888889999999999999999999999997633  6799


Q ss_pred             EEeCCCCCHHHHHHHHHhcCC-CCcEEEEEecCHHHHHHHHhhcc------------------------C-----CCCCC
Q 028025          102 LIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRN------------------------Q-----GREDD  151 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~-~~~~~i~L~~~~e~~~~R~~~r~------------------------~-----~~~~~  151 (215)
                      |+||||.+..+...+.. ... .++.+|+|++|.+++.+|+..|.                        .     +|.++
T Consensus        82 ilDGfPrt~~Qa~~l~~-~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD  160 (210)
T TIGR01351        82 ILDGFPRTLSQAEALDA-LLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDD  160 (210)
T ss_pred             EEeCCCCCHHHHHHHHH-HhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCC
Confidence            99999999999998887 555 68999999999999999999881                        0     26678


Q ss_pred             cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      ..+.+.+|+..|+....++.++|...+.++.+|++.+++++++.|.+.|.
T Consensus       161 ~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  210 (210)
T TIGR01351       161 TEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEALK  210 (210)
T ss_pred             CHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhhC
Confidence            89999999999999999999999998889999999999999999998763

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14529 adenylate kinase; Provisional

Probab=100.00  E-value=1.5e-30  Score=190.26  Aligned_cols=179  Identities=26%  Similarity=0.547  Sum_probs=158.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      +.|+|.|+|||||||+++.|++++++.+++.++++++.+..+++.+..+.+++..|..+|+++...++.+++......++
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~   80 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW   80 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence            35899999999999999999999999999999999999888899999999999999999999999999999987667899


Q ss_pred             EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc---cC----------------------------C
Q 028025          102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR---NQ----------------------------G  147 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r---~~----------------------------~  147 (215)
                      |+||||++..+...|...   ....|+.+|+|++|.+++.+|+..|   ..                            +
T Consensus        81 iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~  160 (223)
T PRK14529         81 LLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELST  160 (223)
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCcccc
Confidence            999999999999988753   3568999999999999999999988   10                            2


Q ss_pred             CCCCc-HHHHHHHHHHHhhc---chhHHHHHHh-----cCcEEEEcCCCCHHHHHHHHHHhh
Q 028025          148 REDDN-VETIRKRFKVFLES---SLPVVQYYEA-----KGKVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       148 ~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~id~~~~~~e~~~~i~~~l  200 (215)
                      |.++. .+.+.+|+..|++.   ..++.++|..     .+.++.+|++++++++++.|.+.+
T Consensus       161 R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l  222 (223)
T PRK14529        161 RADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL  222 (223)
T ss_pred             CCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            56664 67999999999987   4467789985     567999999999999999998876

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.97  E-value=1.3e-29  Score=187.13  Aligned_cols=181  Identities=36%  Similarity=0.696  Sum_probs=161.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  100 (215)
                      +.|+|.|+|||||||+|+.|++++|+.+++.+++++..+..+.+.+..+...+..+...+++....++.+.+.... ..+
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g   80 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG   80 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence            4699999999999999999999999999999999999988888888889999999999999999999999887654 458


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------CCC
Q 028025          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGR  148 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~-----------------------------~~~  148 (215)
                      +|+||||.+..+...+.+.   ....++.+|+|++|.+++.+|+..|.                             .++
T Consensus        81 ~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r  160 (215)
T PRK00279         81 FLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQR  160 (215)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCC
Confidence            9999999999888877542   34578899999999999999999882                             145


Q ss_pred             CCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      .++..+.+.+|+..|.....++.++|...+.++.||++.+++++++.|...|..
T Consensus       161 ~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (215)
T PRK00279        161 ADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK  214 (215)
T ss_pred             CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            678899999999999999999999999888899999999999999999988764

>PRK02496 adk adenylate kinase; Provisional

Probab=99.97  E-value=3.6e-29  Score=180.76  Aligned_cols=178  Identities=33%  Similarity=0.633  Sum_probs=159.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  100 (215)
                      +.|+|.|+|||||||+|+.|++.+|+.+++.|++++..+..+.+.+.....++..+...+++....++...+.+.. ..+
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g   81 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG   81 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence            5699999999999999999999999999999999999988888888888888999999999999999998887544 568


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (215)
                      +|+||||.+..+...+..+   ....|+.+|+|++|.+++.+|+..|  ++.++..+.+.+|+..|.....++.++|...
T Consensus        82 ~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R--~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~  159 (184)
T PRK02496         82 WILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLAR--GRKDDTEEVIRRRLEVYREQTAPLIDYYRDR  159 (184)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999998887766653   3357899999999999999999998  7777888999999999999999999999887


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          178 GKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       178 ~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      +.++.||++.++++++++|...+.
T Consensus       160 ~~~~~Ida~~~~~~V~~~i~~~l~  183 (184)
T PRK02496        160 QKLLTIDGNQSVEAVTTELKAALA  183 (184)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC
Confidence            788999999999999999998774

>PRK14526 adenylate kinase; Provisional

Probab=99.97  E-value=1.8e-29  Score=184.38  Aligned_cols=179  Identities=30%  Similarity=0.573  Sum_probs=161.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCeE
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF  101 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  101 (215)
                      .|+|.|+|||||||+++.|++.+++.+++.|++++..+..+.+.+..+...+..+...|++....++.+.+.... ..++
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~   81 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNF   81 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcE
Confidence            588999999999999999999999999999999999988888889999999999999999999999999987654 6789


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------CCCCCCc
Q 028025          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDN  152 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~-----------------------------~~~~~~~  152 (215)
                      |+||||++..+...|.. .... ..+++|.+|++++.+|+..|.                             .+|.++.
T Consensus        82 ilDGfPR~~~Qa~~l~~-~~~~-~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~  159 (211)
T PRK14526         82 ILDGFPRNINQAKALDK-FLPN-IKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDK  159 (211)
T ss_pred             EEECCCCCHHHHHHHHH-hcCC-CEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCC
Confidence            99999999999999887 4333 357889999999999999871                             1477889


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      .+.+.+|+..|+....++.++|...+.++.+|++.+++++++.|.+.|...
T Consensus       160 ~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~~  210 (211)
T PRK14526        160 EESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISKK  210 (211)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHccc
Confidence            999999999999999999999999888999999999999999999988753

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.97  E-value=6.4e-29  Score=183.36  Aligned_cols=179  Identities=23%  Similarity=0.490  Sum_probs=160.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--c
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--S   96 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   96 (215)
                      ..|+.|+|.|+|||||||+|+.|++.+|+.+++.|+++++.+..++..+..+.+++..|...+++.+.+++...+.+  .
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~   83 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTD   83 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcc
Confidence            45678999999999999999999999999999999999999888888999999999999999999999999999876  3


Q ss_pred             C-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc------------------------------
Q 028025           97 G-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN------------------------------  145 (215)
Q Consensus        97 ~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~------------------------------  145 (215)
                      . ..++++||||++..+...+.. . ..++++|+|+++.+++.+|+..|.                              
T Consensus        84 ~~~~g~iLDGfPRt~~Qa~~l~~-~-~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c  161 (229)
T PTZ00088         84 DCFKGFILDGFPRNLKQCKELGK-I-TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADC  161 (229)
T ss_pred             ccCceEEEecCCCCHHHHHHHHh-c-CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCcc
Confidence            3 689999999999999988876 3 578999999999999999998871                              


Q ss_pred             ---------CCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCc-EEEE---cCCCCHHHHHHHHHHh
Q 028025          146 ---------QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK-VRKI---DAAKPVAEVFDAVKAV  199 (215)
Q Consensus       146 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i---d~~~~~~e~~~~i~~~  199 (215)
                               .+|.++..+.+.+|+..|.+...++.++|...+. ++.+   |++.+++++++.|.+.
T Consensus       162 ~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~  228 (229)
T PTZ00088        162 EGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR  228 (229)
T ss_pred             cccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence                     0466777899999999999999999999999887 7777   7899999999988764

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.97  E-value=7.5e-28  Score=174.63  Aligned_cols=182  Identities=48%  Similarity=0.877  Sum_probs=155.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc--C
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G   97 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   97 (215)
                      +.++|+|.|+|||||||+|+.|++.+|+.+++.|++++..+......+..+...+..+...+...+...+...+...  .
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   81 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGT   81 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCc
Confidence            34689999999999999999999999999999999999887666666667777778888888887777777766542  2


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (215)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (215)
                      +.++|+||+|....+...+.. ....|+++|+|++|++++.+|+.+|  ..++.++..+.+.+|+..|+....++..+|.
T Consensus        82 ~~~~i~dg~~~~~~q~~~~~~-~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~  160 (188)
T TIGR01360        82 SKGFLIDGYPREVKQGEEFER-RIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYE  160 (188)
T ss_pred             CCeEEEeCCCCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHH
Confidence            789999999998888887776 6677999999999999999999988  2457777888999999999998888888888


Q ss_pred             hcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          176 AKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       176 ~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      ..+.++.+|++.+++++++.|...++.
T Consensus       161 ~~~~~~~id~~~~~~~v~~~i~~~l~~  187 (188)
T TIGR01360       161 TKGKLRKINAEGTVDDVFLQVCTAIDK  187 (188)
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            777788999999999999999988753

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14530 adenylate kinase; Provisional

Probab=99.96  E-value=2.1e-27  Score=175.50  Aligned_cols=176  Identities=35%  Similarity=0.656  Sum_probs=149.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH-----HcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-----KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (215)
                      +.|+|.|+|||||||+|+.|++.+|+.+++.|++++...     ......+. ....+..|...+++....++...+.. 
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~-   81 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD-   81 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc-
Confidence            369999999999999999999999999999999999876     22333333 45567888999999888888887654 


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-c----------------------------CC
Q 028025           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N----------------------------QG  147 (215)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~----------------------------~~  147 (215)
                       ..++|+||||.+..+...+.. . ..++.+|+|++|.+++.+|+.+| .                            ..
T Consensus        82 -~~~~IldG~pr~~~q~~~l~~-~-~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~  158 (215)
T PRK14530         82 -ADGFVLDGYPRNLEQAEYLES-I-TDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQ  158 (215)
T ss_pred             -CCCEEEcCCCCCHHHHHHHHH-h-cCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccC
Confidence             468999999999988887765 2 45889999999999999999887 1                            13


Q ss_pred             CCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          148 REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      +.++..+.+.+|+..|.....++.++|...+.++.||++.+++++++.|...|..
T Consensus       159 R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  213 (215)
T PRK14530        159 RDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD  213 (215)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence            5667788999999999999999999999888889999999999999999998864

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.96  E-value=3.7e-27  Score=171.83  Aligned_cols=168  Identities=41%  Similarity=0.758  Sum_probs=149.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCeE
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF  101 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  101 (215)
                      .|+|+|+|||||||+|+.|++.+|+.+++.+++++..+......+..+...+..+...+.+....++...+.... +.++
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~   80 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF   80 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence            389999999999999999999999999999999999988887888888888888899999999999998887643 6789


Q ss_pred             EEeCCCCCHHHHHHHHHhcCC---CCcEEEEEecCHHHHHHHHhhcc---------------------CCCCCCcHHHHH
Q 028025          102 LIDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSEEEMERRILNRN---------------------QGREDDNVETIR  157 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~---~~~~~i~L~~~~e~~~~R~~~r~---------------------~~~~~~~~~~~~  157 (215)
                      |+||||.+..+...|.. ...   .++++|+|++|++++.+|+.+|.                     ..+.++..+.+.
T Consensus        81 vldg~Pr~~~q~~~l~~-~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i~  159 (194)
T cd01428          81 ILDGFPRTVDQAEALDE-LLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIK  159 (194)
T ss_pred             EEeCCCCCHHHHHHHHH-HHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHHH
Confidence            99999999999888887 444   78999999999999999999982                     136677889999


Q ss_pred             HHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHH
Q 028025          158 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAE  191 (215)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e  191 (215)
                      +|+..|.....++.++|...+.++.+|++.++++
T Consensus       160 ~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~  193 (194)
T cd01428         160 KRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDE  193 (194)
T ss_pred             HHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCc
Confidence            9999999999999999999888999999888775

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.96  E-value=2.2e-26  Score=163.58  Aligned_cols=172  Identities=34%  Similarity=0.657  Sum_probs=156.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  100 (215)
                      +.|+|.|+|||||||+|+.|++++++.|++.|++++......++.+.....++..+..+++......+...+.... ..+
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~   80 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG   80 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence            4699999999999999999999999999999999999999999999999999999999999999999999998764 228


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCC-CCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028025          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQG-REDDNVETIRKRFKVFLESSLPVVQYYEA  176 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (215)
                      +|+||||.+..+...+...   .+...+.++.++++.+.+..|+..|  . +.++..+.+.+|+..|+....++..+|. 
T Consensus        81 ~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r--~~r~dd~~~~~~~R~~~y~~~~~pli~~y~-  157 (178)
T COG0563          81 FILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGR--RVREDDNEETVKKRLKVYHEQTAPLIEYYS-  157 (178)
T ss_pred             EEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCc--cccccCCHHHHHHHHHHHHhcccchhhhhe-
Confidence            9999999999999888864   2468899999999999999999988  3 7888999999999999999999998887 


Q ss_pred             cCcEEEEcCCCCHHHHHHHHHHhh
Q 028025          177 KGKVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       177 ~~~~~~id~~~~~~e~~~~i~~~l  200 (215)
                          +.+|+..+++++++.+...+
T Consensus       158 ----~~id~~~~i~~v~~~i~~~l  177 (178)
T COG0563         158 ----VTIDGSGEIEEVLADILKAL  177 (178)
T ss_pred             ----eeccCCCCHHHHHHHHHHhh
Confidence                88999999999999998765

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.95  E-value=1.2e-26  Score=162.45  Aligned_cols=146  Identities=44%  Similarity=0.850  Sum_probs=129.7

Q ss_pred             EEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc-CCCeEEEe
Q 028025           26 VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFLID  104 (215)
Q Consensus        26 i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iid  104 (215)
                      |.|||||||||+|+.||+++|+.+++.+++++..+...++.+..+.+.+.+|..+|++++..++...+... ...++|+|
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild   80 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD   80 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999876 48999999


Q ss_pred             CCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcC
Q 028025          105 GFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG  178 (215)
Q Consensus       105 g~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (215)
                      |||.+..+...|...   ....|+.+|+|++|.+.+.+|+.+       +..+.+.+|+..|++...++.++|.+.+
T Consensus        81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~-------d~~~~i~~Rl~~y~~~~~~i~~~y~~~g  150 (151)
T PF00406_consen   81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ-------DNEEVIKKRLEEYRENTEPILDYYKEQG  150 (151)
T ss_dssp             SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT-------GSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999888762   467889999999999999999984       6678999999999999999999998754

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PLN02842 nucleotide kinase

Probab=99.95  E-value=4.8e-26  Score=182.59  Aligned_cols=180  Identities=30%  Similarity=0.641  Sum_probs=159.2

Q ss_pred             EEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC--CCeEE
Q 028025           25 FVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--NDKFL  102 (215)
Q Consensus        25 ~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i  102 (215)
                      +|.|+|||||||+|+.|++++++.+++.+++++..+..+++.+..+.+++..|...+++.+..++.+++....  ..++|
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I   80 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL   80 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence            4899999999999999999999999999999999989999999999999999999999999999988886543  56799


Q ss_pred             EeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc----c---------------------CCCCCCcHHHHH
Q 028025          103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----N---------------------QGREDDNVETIR  157 (215)
Q Consensus       103 idg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r----~---------------------~~~~~~~~~~~~  157 (215)
                      +||||.+..+...+.. ....||++|+|++|++++.+|+.+|    .                     .+|.++..+.+.
T Consensus        81 LDGfPRt~~Qa~~Le~-~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ik  159 (505)
T PLN02842         81 LDGYPRSFAQAQSLEK-LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVK  159 (505)
T ss_pred             EeCCCCcHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHH
Confidence            9999999999888887 6778999999999999999999877    1                     146678899999


Q ss_pred             HHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcccc
Q 028025          158 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKV  207 (215)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~~  207 (215)
                      +|+..|.+...++..+|..  .+..+|++.++++++++|.+.|......+
T Consensus       160 kRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~~~L~~~  207 (505)
T PLN02842        160 ARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLSQIQKDA  207 (505)
T ss_pred             HHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999888864  47889999999999999998887665443

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=99.91  E-value=2.2e-22  Score=145.80  Aligned_cols=185  Identities=38%  Similarity=0.655  Sum_probs=165.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-C
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-N   98 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   98 (215)
                      ++...++.|+|||||+|+|..+++.++..+++.+|++|+.+..+++.+......++.+...+++++..++...+.... .
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~   93 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ   93 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence            678899999999999999999999999999999999999999999999999999999999999999887777776653 7


Q ss_pred             CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc----c-------------------------CCCC
Q 028025           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----N-------------------------QGRE  149 (215)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r----~-------------------------~~~~  149 (215)
                      .++++||||++..+...+.. ....+|.+|.|++|.+.+.+|+..|    .                         .++.
T Consensus        94 ~~~ildg~Prt~~qa~~l~~-~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~  172 (235)
T KOG3078|consen   94 KGFILDGFPRTVQQAEELLD-RIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQRE  172 (235)
T ss_pred             cccccCCCCcchHHHHHHHH-ccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCc
Confidence            89999999999998888777 8899999999999999999999887    1                         1356


Q ss_pred             CCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK  206 (215)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~  206 (215)
                      ++.++.+..|+..|.+...++.++|...+.+..+++.. .++++..|...+.....+
T Consensus       173 dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~~  228 (235)
T KOG3078|consen  173 DDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKVPE  228 (235)
T ss_pred             cccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhhhh
Confidence            78899999999999999999999999998777777766 899999999888766443

>PRK01184 hypothetical protein; Provisional

Probab=99.86  E-value=4.2e-19  Score=128.25  Aligned_cols=170  Identities=24%  Similarity=0.337  Sum_probs=112.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc-CCC-----cHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSE-----NGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (215)
                      ++|+|+|+|||||||+++ +++++|+.+++.||+++..+.. +.+     ++........  . +.......++...+..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~--~-~~~~~~~~~~~~~i~~   77 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK--E-LGMDAVAKRTVPKIRE   77 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH--H-HChHHHHHHHHHHHHh
Confidence            589999999999999987 6789999999999999988743 221     2222222111  1 1122223343444544


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCC--CcHHHHHHHHHHHhhcchhHHHH
Q 028025           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRED--DNVETIRKRFKVFLESSLPVVQY  173 (215)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  173 (215)
                      .++..+|+||+ ....+...+.+ ....+..+|++.+|++++.+|+..|  ++..  ...+.+.++......  .+..+.
T Consensus        78 ~~~~~vvidg~-r~~~e~~~~~~-~~~~~~~~i~v~~~~~~~~~Rl~~R--~~~~d~~~~~~~~~r~~~q~~--~~~~~~  151 (184)
T PRK01184         78 KGDEVVVIDGV-RGDAEVEYFRK-EFPEDFILIAIHAPPEVRFERLKKR--GRSDDPKSWEELEERDERELS--WGIGEV  151 (184)
T ss_pred             cCCCcEEEeCC-CCHHHHHHHHH-hCCcccEEEEEECCHHHHHHHHHHc--CCCCChhhHHHHHHHHHHHhc--cCHHHH
Confidence            45789999998 56677777766 4444668999999999999999988  4432  245667666654321  112222


Q ss_pred             HHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          174 YEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       174 ~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      +. ... ++|+++.+.+++..++.+++...
T Consensus       152 ~~-~ad-~vI~N~~~~~~l~~~v~~~~~~~  179 (184)
T PRK01184        152 IA-LAD-YMIVNDSTLEEFRARVRKLLERI  179 (184)
T ss_pred             HH-hcC-EEEeCCCCHHHHHHHHHHHHHHH
Confidence            32 223 55567779999999999887643

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.83  E-value=1.3e-18  Score=117.97  Aligned_cols=169  Identities=17%  Similarity=0.203  Sum_probs=104.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      ++|.|.|+|||||||+|+.||+++|+.+++.|.++|+......-.-..+..+-.....+ +......... +..  ..++
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~i-D~~iD~rq~e-~a~--~~nv   76 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEI-DKEIDRRQKE-LAK--EGNV   76 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchh-hHHHHHHHHH-HHH--cCCe
Confidence            57999999999999999999999999999999999998766332333343333322221 1111222222 222  5788


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH-hcC--
Q 028025          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE-AKG--  178 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--  178 (215)
                      |++|.      ...|.. . ..+|+.|||.+|.++..+|+.+|+.....+.......|-..-.+   ...+.|. +.+  
T Consensus        77 Vlegr------LA~Wi~-k-~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~k---RY~~~YgIDidDl  145 (179)
T COG1102          77 VLEGR------LAGWIV-R-EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKK---RYKKIYGIDIDDL  145 (179)
T ss_pred             EEhhh------hHHHHh-c-cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---HHHHHhCCCCccc
Confidence            88874      344443 3 67899999999999999999998332222222222222221111   1122232 111  


Q ss_pred             --cEEEEcC-CCCHHHHHHHHHHhhCCCcc
Q 028025          179 --KVRKIDA-AKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       179 --~~~~id~-~~~~~e~~~~i~~~l~~~~~  205 (215)
                        .-+++|+ .-++++++.-+...+.....
T Consensus       146 SiyDLVinTs~~~~~~v~~il~~aid~~~~  175 (179)
T COG1102         146 SIYDLVINTSKWDPEEVFLILLDAIDALSI  175 (179)
T ss_pred             eeeEEEEecccCCHHHHHHHHHHHHHhhcc
Confidence              2345555 66888888888887765543

>PRK13973 thymidylate kinase; Provisional

Probab=99.82  E-value=5.3e-18  Score=124.98  Aligned_cols=174  Identities=22%  Similarity=0.307  Sum_probs=110.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh---CCeEeeH--------HHHHHHHHHcC--CCcHHHHHHHHHcCCCCCHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSA--------GDLLRAEIKSG--SENGTMIQNMIKEGKIVPSEVTIK   87 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~---~~~~i~~--------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   87 (215)
                      +++|+|+|++||||||+++.|++.+   |+.++..        ++.+|+.+...  ...+......+...  ...+.+..
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~~   80 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVEE   80 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHHH
Confidence            6899999999999999999999999   7776654        77777766542  12222222222211  11122234


Q ss_pred             HHHHHHHccCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccC----CCC
Q 028025           88 LLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQ----GRE  149 (215)
Q Consensus        88 ~~~~~~~~~~~~~~iidg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~----~~~  149 (215)
                      .+...+..  +..||.|+|..+            ..+...+...  ..+.||++|||++|++++.+|+.+|..    ++.
T Consensus        81 ~i~~~l~~--g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~  158 (213)
T PRK13973         81 VIRPALAR--GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRF  158 (213)
T ss_pred             HHHHHHHC--CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCch
Confidence            45555543  788999986522            2233444321  346899999999999999999998811    122


Q ss_pred             C-CcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025          150 D-DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (215)
Q Consensus       150 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~  204 (215)
                      + ...+...++...|...    .+.+  ...+.+||++.+++++.++|...+....
T Consensus       159 e~~~~~~~~~~~~~y~~l----~~~~--~~~~~~Ida~~~~e~V~~~I~~~i~~~~  208 (213)
T PRK13973        159 EKEDLAFHEKRREAFLQI----AAQE--PERCVVIDATASPEAVAAEIWAAVDQRL  208 (213)
T ss_pred             hhchHHHHHHHHHHHHHH----HHhC--CCcEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence            2 1233444444444432    1111  2357889999999999999998886543

>PRK03839 putative kinase; Provisional

Probab=99.80  E-value=6e-18  Score=121.79  Aligned_cols=153  Identities=19%  Similarity=0.338  Sum_probs=97.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-cCCCe
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDK  100 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  100 (215)
                      ++|+|+|+|||||||+++.|++++++.+++.|++++..  .   .......   .+.     .....+...+.. ..+..
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~--~---~~~~~~~---~~~-----~~~~~l~~~~~~~~~~~~   67 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK--G---IGEEKDD---EME-----IDFDKLAYFIEEEFKEKN   67 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc--C---CcccCCh---hhh-----cCHHHHHHHHHHhccCCC
Confidence            36999999999999999999999999999999987653  1   1110000   001     112222222222 12566


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHH-HHHhhcchhHHHHHHhcCc
Q 028025          101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF-KVFLESSLPVVQYYEAKGK  179 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  179 (215)
                      +|+||+..           ....++.+|||+++++++.+|+..|  +..   ...+.... ..+.+.  ...+.+.....
T Consensus        68 vIidG~~~-----------~l~~~~~vi~L~~~~~~~~~Rl~~R--~~~---~~~~~~~~~~~~~~~--~~~~~~~~r~~  129 (180)
T PRK03839         68 VVLDGHLS-----------HLLPVDYVIVLRAHPKIIKERLKER--GYS---KKKILENVEAELVDV--CLCEALEEKEK  129 (180)
T ss_pred             EEEEeccc-----------cccCCCEEEEEECCHHHHHHHHHHc--CCC---HHHHHHHHHHHHHHH--HHHHHHHhcCC
Confidence            99999642           1235788999999999999999987  321   11111111 111110  12244555667


Q ss_pred             EEEEcCC-CCHHHHHHHHHHhhCCCcc
Q 028025          180 VRKIDAA-KPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       180 ~~~id~~-~~~~e~~~~i~~~l~~~~~  205 (215)
                      ++.+|++ .++++++++|.+.+.....
T Consensus       130 ~~~Id~~~~s~eev~~~I~~~l~~~~~  156 (180)
T PRK03839        130 VIEVDTTGKTPEEVVEEILELIKSGKK  156 (180)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence            8899985 6999999999999876533

>PRK06762 hypothetical protein; Provisional

Probab=99.79  E-value=3.7e-17  Score=116.18  Aligned_cols=158  Identities=16%  Similarity=0.222  Sum_probs=97.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh--CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (215)
                      +|++|+|+|+|||||||+|+.|++.+  ++.+++.|.+.+.. .....          .......+......+..+.  .
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l-~~~~~----------~~~~~~~~~~~~~~~~~~~--~   67 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM-LRVKD----------GPGNLSIDLIEQLVRYGLG--H   67 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh-ccccC----------CCCCcCHHHHHHHHHHHHh--C
Confidence            47899999999999999999999999  56677775544332 21110          0011112222333333332  2


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCC-CCcHHHHHHHHHHHhhcchhHHHHH
Q 028025           98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRE-DDNVETIRKRFKVFLESSLPVVQYY  174 (215)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  174 (215)
                      +..+|+|+..........+..+  ....+...|||++|.+++.+|+.+|  +.. ....+.+..++....    .+    
T Consensus        68 g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R--~~~~~~~~~~l~~~~~~~~----~~----  137 (166)
T PRK06762         68 CEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTR--PKSHEFGEDDMRRWWNPHD----TL----  137 (166)
T ss_pred             CCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcc--cccccCCHHHHHHHHhhcC----Cc----
Confidence            7789999865433333333332  3344678999999999999999988  331 223455554433322    11    


Q ss_pred             HhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          175 EAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       175 ~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      . ....++++++.++++++++|...+.
T Consensus       138 ~-~~~~~~~~~~~~~~~v~~~i~~~~~  163 (166)
T PRK06762        138 G-VIGETIFTDNLSLKDIFDAILTDIG  163 (166)
T ss_pred             C-CCCeEEecCCCCHHHHHHHHHHHhc
Confidence            1 1235677778899999999988764

>PRK04040 adenylate kinase; Provisional

Probab=99.79  E-value=9.6e-18  Score=120.82  Aligned_cols=172  Identities=15%  Similarity=0.236  Sum_probs=106.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh--CCeEeeHHHHHHHHHHcCC--CcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGS--ENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~--~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (215)
                      +++|+|+|+|||||||+++.|++.+  ++.+++.|+++++......  ...+.+...    ....+..+.......+...
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l----~~~~~~~~~~~a~~~i~~~   77 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKL----PPEEQKELQREAAERIAEM   77 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhC----ChhhhHHHHHHHHHHHHHh
Confidence            6789999999999999999999999  8999999999887765522  222222211    1111112222333333332


Q ss_pred             C-CCeEEEeCCCCCHH--------HHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHhhc
Q 028025           97 G-NDKFLIDGFPRNEE--------NRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLES  166 (215)
Q Consensus        97 ~-~~~~iidg~~~~~~--------~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~  166 (215)
                      . +..+|+||+.....        ....+   ....|+.+|++.+++++..+|..+. .++|..+..+.+..++......
T Consensus        78 ~~~~~~~~~~h~~i~~~~g~~~~~~~~~~---~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~  154 (188)
T PRK04040         78 AGEGPVIVDTHATIKTPAGYLPGLPEWVL---EELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAA  154 (188)
T ss_pred             hcCCCEEEeeeeeeccCCCCcCCCCHHHH---hhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHH
Confidence            2 56699999653111        11122   3458899999999999988887742 2367777777777766554332


Q ss_pred             chhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhh
Q 028025          167 SLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       167 ~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l  200 (215)
                      ... +..+......+++|.++.+++.++++...+
T Consensus       155 a~~-~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii  187 (188)
T PRK04040        155 AMA-YAVLTGATVKIVENREGLLEEAAEEIVEVL  187 (188)
T ss_pred             HHH-HHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence            111 111222233445555555999999998776

>PRK06217 hypothetical protein; Validated

Probab=99.79  E-value=1.4e-17  Score=120.00  Aligned_cols=161  Identities=17%  Similarity=0.241  Sum_probs=103.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      +.|+|+|+|||||||+++.|++.+|+.+++.|++++..  .+..+.          ...+.+.....+...+..  +..+
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~--~~~~   67 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPFT----------TKRPPEERLRLLLEDLRP--REGW   67 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCcc----------ccCCHHHHHHHHHHHHhc--CCCE
Confidence            56999999999999999999999999999998877632  111111          122333334444444432  5679


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc---CCC---CCC----cHHHHHHHHHHHhhcc---h
Q 028025          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN---QGR---EDD----NVETIRKRFKVFLESS---L  168 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~---~~~---~~~----~~~~~~~~~~~~~~~~---~  168 (215)
                      |+||++..  ....    ....+|.+|||++|.+++..|+.+|.   .++   ...    ....+.++...|....   .
T Consensus        68 vi~G~~~~--~~~~----~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~  141 (183)
T PRK06217         68 VLSGSALG--WGDP----LEPLFDLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDTAGPEGR  141 (183)
T ss_pred             EEEccHHH--HHHH----HHhhCCEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccCCCCCcc
Confidence            99997632  2121    23457889999999999999999882   122   111    1223444443443211   1


Q ss_pred             hH---HHHHHhc-CcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          169 PV---VQYYEAK-GKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       169 ~~---~~~~~~~-~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      .+   ..++... ..++.+++..+++++++.|...|.+
T Consensus       142 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~  179 (183)
T PRK06217        142 SLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS  179 (183)
T ss_pred             cHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence            11   1222322 4678889988999999999998854

>PRK13975 thymidylate kinase; Provisional

Probab=99.78  E-value=5.3e-17  Score=118.45  Aligned_cols=171  Identities=19%  Similarity=0.281  Sum_probs=95.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEe--e----HHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL--S----AGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (215)
                      +++|+|+|++||||||+++.|++.++..+.  .    .+..++..+.............+....    ......+...+.
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r----~~~~~~i~~~~~   77 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADR----VEHVKEIEEDLK   77 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHH----HHHHHHHHHHHc
Confidence            478999999999999999999999985322  1    123344433222111111111110000    000111222222


Q ss_pred             ccCCCeEEEeCCCCC-----------HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH-H
Q 028025           95 ESGNDKFLIDGFPRN-----------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK-V  162 (215)
Q Consensus        95 ~~~~~~~iidg~~~~-----------~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~-~  162 (215)
                         ...+|.|+|..+           ..+...+.. ....|+++|||++|++++.+|+..|  +++......+.++.. .
T Consensus        78 ---~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~-~~~~pd~vi~L~~~~e~~~~Rl~~r--~~~~~~~~~~~~~~~~~  151 (196)
T PRK13975         78 ---KRDVVCDRYVYSSIAYQSVQGIDEDFIYSINR-YAKKPDLVFLLDVDIEEALKRMETR--DKEIFEKKEFLKKVQEK  151 (196)
T ss_pred             ---CCEEEEECchhHHHHHhcccCCCHHHHHHHHh-CCCCCCEEEEEcCCHHHHHHHHhcc--CccccchHHHHHHHHHH
Confidence               367899976532           122222333 3467999999999999999999988  433222223333332 3


Q ss_pred             HhhcchhHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhCCC
Q 028025          163 FLESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~~~  203 (215)
                      |.+...  ...+.....++++|++ .++++++++|.+.+...
T Consensus       152 y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~  191 (196)
T PRK13975        152 YLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDK  191 (196)
T ss_pred             HHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            332211  1112222347888884 89999999999888644

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.76  E-value=1.2e-17  Score=129.71  Aligned_cols=164  Identities=21%  Similarity=0.240  Sum_probs=105.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (215)
                      +.+|++.|+|||||||+|+.|++++ ++.+++.|++ +..+......+..  .+...............+...+.  .+.
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~-r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~--~g~   76 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL-RQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK--SGK   76 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH-HHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHH--cCC
Confidence            5789999999999999999999999 8999999664 4443322111100  00000000001122233333333  268


Q ss_pred             eEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHH---HHHHHHhhcchhHHHHH
Q 028025          100 KFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR---KRFKVFLESSLPVVQYY  174 (215)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  174 (215)
                      .+|+|+++.....+..|..+  .....-.+++|.+|.+++.+|+.+|  +.+....+.+.   ++++.+...+.|++..+
T Consensus        77 ~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~  154 (300)
T PHA02530         77 SVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR--GERAVPEDVLRSMFKQMKEYRGLVWPVYTAD  154 (300)
T ss_pred             eEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc--CcCCCCHHHHHHHHHHHHHhcCCCCceeccC
Confidence            89999988887777766553  1112223799999999999999999  54444555555   78888877777776666


Q ss_pred             HhcCcEEEEcCCCCHHH
Q 028025          175 EAKGKVRKIDAAKPVAE  191 (215)
Q Consensus       175 ~~~~~~~~id~~~~~~e  191 (215)
                      .....++.+|.++++.+
T Consensus       155 ~~~~~~~~~D~dgtl~~  171 (300)
T PHA02530        155 PGLPKAVIFDIDGTLAK  171 (300)
T ss_pred             CCCCCEEEEECCCcCcC
Confidence            55556788886666543

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.76  E-value=1.8e-16  Score=114.98  Aligned_cols=174  Identities=22%  Similarity=0.340  Sum_probs=104.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC-CCC-CHHHH-------HH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-KIV-PSEVT-------IK   87 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~-------~~   87 (215)
                      ++++|+|.|.-||||||+++.|++.+.   +.++-.    ++  +.+++.++.+.+.+.++ ... +....       .+
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t----rE--P~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~   75 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT----RE--PGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQ   75 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE----eC--CCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999994   333321    11  33455555565555543 111 11111       12


Q ss_pred             HHHHHHHc--cCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028025           88 LLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (215)
Q Consensus        88 ~~~~~~~~--~~~~~~iidg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~  151 (215)
                      .+.+.+..  ..+..||.|.|..+            .++...+.+.  ....||+.+||++|+++..+|+.+|  +...+
T Consensus        76 h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r--~~~~~  153 (208)
T COG0125          76 HLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKR--GELRD  153 (208)
T ss_pred             HHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhc--CCccc
Confidence            22222221  12789999986643            2344444331  2348999999999999999999988  22211


Q ss_pred             cHHHHHHHHHHHhhcchhHHHHHHhcC--cEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025          152 NVETIRKRFKVFLESSLPVVQYYEAKG--KVRKIDAAKPVAEVFDAVKAVFTPKD  204 (215)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~id~~~~~~e~~~~i~~~l~~~~  204 (215)
                      ..+   ..-..+++.++..+..+....  .+++||++.+++++.+.|...+....
T Consensus       154 r~E---~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l  205 (208)
T COG0125         154 RFE---KEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERL  205 (208)
T ss_pred             hhh---hHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHhh
Confidence            111   111112222222221122222  48999999999999999998887543

>PRK13949 shikimate kinase; Provisional

Probab=99.76  E-value=3e-16  Score=111.35  Aligned_cols=160  Identities=19%  Similarity=0.240  Sum_probs=95.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEE
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (215)
                      .|+|.|+|||||||+++.|++.+++.+++.|+++.....  ....+.+.   ..+.....+...+++.. +... ...||
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~--~~~~~~~~---~~g~~~fr~~e~~~l~~-l~~~-~~~vi   75 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH--KTVGDIFA---ERGEAVFRELERNMLHE-VAEF-EDVVI   75 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC--ccHHHHHH---HhCHHHHHHHHHHHHHH-HHhC-CCEEE
Confidence            599999999999999999999999999999887765421  11222111   22222223333444444 3222 33344


Q ss_pred             EeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC---cHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025          103 IDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD---NVETIRKRFKVFLESSLPVVQYYEAK  177 (215)
Q Consensus       103 idg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (215)
                      ..|  .+........+..     .+++|||++|++.+.+|+..+.++|+..   ..+.+.+.+...+....++   |.. 
T Consensus        76 s~Ggg~~~~~~~~~~l~~-----~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~---Y~~-  146 (169)
T PRK13949         76 STGGGAPCFFDNMELMNA-----SGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPF---YRQ-  146 (169)
T ss_pred             EcCCcccCCHHHHHHHHh-----CCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHH---HHh-
Confidence            344  3344444445544     4679999999999999997431133322   2233444444444443443   555 


Q ss_pred             CcEEEEcC-CCCHHHHHHHHHHh
Q 028025          178 GKVRKIDA-AKPVAEVFDAVKAV  199 (215)
Q Consensus       178 ~~~~~id~-~~~~~e~~~~i~~~  199 (215)
                      .+ +++|. +.+++++++.|.+.
T Consensus       147 ad-~~id~~~~~~~e~~~~I~~~  168 (169)
T PRK13949        147 AK-IIFNADKLEDESQIEQLVQR  168 (169)
T ss_pred             CC-EEEECCCCCHHHHHHHHHHh
Confidence            33 45554 56899999988764

>PLN02924 thymidylate kinase

Probab=99.76  E-value=1.4e-16  Score=117.40  Aligned_cols=171  Identities=22%  Similarity=0.307  Sum_probs=101.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHH-HH----------H
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE-VT----------I   86 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~   86 (215)
                      .+++++|+|+|++||||||+++.|++.++...+.. ..++. ...+...+..+...+......... ..          .
T Consensus        13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~   90 (220)
T PLN02924         13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKR   90 (220)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999996432222 11111 011233444444444332222111 00          1


Q ss_pred             HHHHHHHHccCCCeEEEeCCCCC-----------HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHH
Q 028025           87 KLLQKAMEESGNDKFLIDGFPRN-----------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET  155 (215)
Q Consensus        87 ~~~~~~~~~~~~~~~iidg~~~~-----------~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~  155 (215)
                      ..+..++.  .+..||.|.|..+           .+++..+.. ..+.||++|||++|++++.+|...+  +...+.. +
T Consensus        91 ~~I~pal~--~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~-~~~~PDlvi~Ld~~~~~a~~R~~~~--~~~~E~~-~  164 (220)
T PLN02924         91 SLMERKLK--SGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEV-GLPAPDLVLYLDISPEEAAERGGYG--GERYEKL-E  164 (220)
T ss_pred             HHHHHHHH--CCCEEEEccchhHHHHHHHhcCCCHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHhccC--ccccccH-H
Confidence            22333333  2889999987653           233333443 5678999999999999999996533  1111222 2


Q ss_pred             HHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025          156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (215)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~  204 (215)
                      +.++....       +..+.. ..+.+||++.+++++.++|...+....
T Consensus       165 ~~~rv~~~-------Y~~la~-~~~~vIDa~~sieeV~~~I~~~I~~~l  205 (220)
T PLN02924        165 FQKKVAKR-------FQTLRD-SSWKIIDASQSIEEVEKKIREVVLDTV  205 (220)
T ss_pred             HHHHHHHH-------HHHHhh-cCEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            23333222       222222 346788999999999999988876543

>PRK13974 thymidylate kinase; Provisional

Probab=99.75  E-value=5.6e-17  Score=119.48  Aligned_cols=174  Identities=21%  Similarity=0.308  Sum_probs=112.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH--HHHHHHHHHcCCCcHHHHHHHHHcC--CCCCHHHHH----------
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA--GDLLRAEIKSGSENGTMIQNMIKEG--KIVPSEVTI----------   86 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------   86 (215)
                      +.+|+|.|++||||||+++.|++.+.......  .+......+.+...+..+.+++...  ...++....          
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~   82 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ   82 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence            57999999999999999999999885211100  0000001123455666666665421  122222111          


Q ss_pred             ---HHHHHHHHccCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCC
Q 028025           87 ---KLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRE  149 (215)
Q Consensus        87 ---~~~~~~~~~~~~~~~iidg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~  149 (215)
                         ..+...+.  .+..||.|.|..+            .++...+...  ....|+++|||++|++++.+|+..|  .  
T Consensus        83 ~~~~~i~~~l~--~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R--~--  156 (212)
T PRK13974         83 HVSKIIRPALE--NGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNR--K--  156 (212)
T ss_pred             HHHHHHHHHHH--CCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--c--
Confidence               12222222  2677887765322            2234444332  3457999999999999999999876  2  


Q ss_pred             CCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      ++   .+.++...|+....+.+..|.+.+.+..+|++.++++++++|...+...
T Consensus       157 dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~  207 (212)
T PRK13974        157 PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNN  207 (212)
T ss_pred             cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            22   2445666778888888888888788889999999999999999888653

>PRK08233 hypothetical protein; Provisional

Probab=99.75  E-value=2.7e-17  Score=118.65  Aligned_cols=168  Identities=17%  Similarity=0.169  Sum_probs=95.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP---SEVTIKLLQKAMEE   95 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~   95 (215)
                      ++++|+|.|+|||||||+|+.|++.++. .++..|+ ++...     .......+...+....   .+.+.+.+......
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   75 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR-YDFDN-----CPEDICKWIDKGANYSEWVLTPLIKDIQELIAK   75 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC-EEccc-----CchhhhhhhhccCChhhhhhHHHHHHHHHHHcC
Confidence            3589999999999999999999999963 3333322 22100     0011222222222221   11122233332222


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (215)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (215)
                      .....+++|+. ..... ..+    ...+|++|||++|.+++.+|+.+|  .......+.+.+++..|....++.+..+.
T Consensus        76 ~~~~~vivd~~-~~~~~-~~~----~~~~d~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~~~~~y~~~~  147 (182)
T PRK08233         76 SNVDYIIVDYP-FAYLN-SEM----RQFIDVTIFIDTPLDIAMARRILR--DFKEDTGNEIHNDLKHYLNYARPLYLEAL  147 (182)
T ss_pred             CCceEEEEeee-hhhcc-HHH----HHHcCEEEEEcCCHHHHHHHHHHH--HhhhccccchhhHHHHHHHHHHHHHHHHh
Confidence            21245666753 21111 112    224789999999999999998777  21111223455666666665555533221


Q ss_pred             h---cCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          176 A---KGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       176 ~---~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      .   ....+++|++.++++++++|...+.
T Consensus       148 ~~~~~~~~~vId~~~~~e~i~~~i~~~l~  176 (182)
T PRK08233        148 HTVKPNADIVLDGALSVEEIINQIEEELY  176 (182)
T ss_pred             hcCccCCeEEEcCCCCHHHHHHHHHHHHH
Confidence            1   1346778998999999999998876

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.75  E-value=1.2e-16  Score=115.90  Aligned_cols=163  Identities=17%  Similarity=0.175  Sum_probs=105.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHH------cCCCCCHHH-----------
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK------EGKIVPSEV-----------   84 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-----------   84 (215)
                      ++|+|+|++||||||+++.|++.+|+.++++|++.++.+..+.+....+.+.+.      +|..+....           
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            479999999999999999999988999999999999988777655555544442      120111110           


Q ss_pred             -------H----HHHHHHHHHccC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025           85 -------T----IKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (215)
Q Consensus        85 -------~----~~~~~~~~~~~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~  152 (215)
                             +    ...+...+.... ...+++|.-. ..+  ..+.    ..+|.+|+++||.+++.+|+.+|  +  +.+
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pl-l~E--~~~~----~~~D~ii~V~a~~e~r~~Rl~~R--~--g~s  150 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVIPL-LFE--AKLT----DLCSEIWVVDCSPEQQLQRLIKR--D--GLT  150 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHH-hcC--cchH----hCCCEEEEEECCHHHHHHHHHHc--C--CCC
Confidence                   1    122222232222 4567777411 111  1222    24788999999999999999988  2  445


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      .+++.+|+....    +... ..... -++|+++++.+++.+++.+++.
T Consensus       151 ~e~~~~ri~~Q~----~~~~-k~~~a-D~vI~N~g~~e~l~~qv~~~l~  193 (195)
T PRK14730        151 EEEAEARINAQW----PLEE-KVKLA-DVVLDNSGDLEKLYQQVDQLLK  193 (195)
T ss_pred             HHHHHHHHHhCC----CHHH-HHhhC-CEEEECCCCHHHHHHHHHHHHh
Confidence            677777765422    1111 12222 3577788899999999988764

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.74  E-value=1.1e-16  Score=111.30  Aligned_cols=165  Identities=19%  Similarity=0.280  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      +-|+++|++||||||+.+.||+.+++.+++.|.++.....  ....+.+.   ..|+..+...-...+.+..... +.++
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g--~sI~eIF~---~~GE~~FR~~E~~vl~~l~~~~-~~Vi   76 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG--MSIAEIFE---EEGEEGFRRLETEVLKELLEED-NAVI   76 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC--cCHHHHHH---HHhHHHHHHHHHHHHHHHhhcC-CeEE
Confidence            4699999999999999999999999999999998887632  22222221   2333333344455555555442 2222


Q ss_pred             EEeC-CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcE
Q 028025          102 LIDG-FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV  180 (215)
Q Consensus       102 iidg-~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (215)
                      -.-| ...+.+.+..+.. .    ..+|||++|.+++++|+..+ +.|+--....-.+.+....+...++   |.+.. .
T Consensus        77 aTGGG~v~~~enr~~l~~-~----g~vv~L~~~~e~l~~Rl~~~-~~RPll~~~~~~~~l~~L~~~R~~~---Y~e~a-~  146 (172)
T COG0703          77 ATGGGAVLSEENRNLLKK-R----GIVVYLDAPFETLYERLQRD-RKRPLLQTEDPREELEELLEERQPL---YREVA-D  146 (172)
T ss_pred             ECCCccccCHHHHHHHHh-C----CeEEEEeCCHHHHHHHhccc-cCCCcccCCChHHHHHHHHHHHHHH---HHHhC-c
Confidence            2222 3344555555554 2    26999999999999999843 1222111111122333333333344   44443 4


Q ss_pred             EEEcCCCCHHHHHHHHHHhhCC
Q 028025          181 RKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       181 ~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      ++++++...++++++|.+.+..
T Consensus       147 ~~~~~~~~~~~v~~~i~~~l~~  168 (172)
T COG0703         147 FIIDTDDRSEEVVEEILEALEG  168 (172)
T ss_pred             EEecCCCCcHHHHHHHHHHHHH
Confidence            6666655558999999888764

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.74  E-value=1.8e-16  Score=113.10  Aligned_cols=172  Identities=21%  Similarity=0.306  Sum_probs=100.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc----CCCc--HHHHHHHHHc--------------CCC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS----GSEN--GTMIQNMIKE--------------GKI   79 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~----~~~~--~~~~~~~~~~--------------~~~   79 (215)
                      +.++|.|.||+||||||+|+.||++||+.|+++|.+||.....    +...  ...+......              +..
T Consensus         3 ~~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~ged   82 (222)
T COG0283           3 AAIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGED   82 (222)
T ss_pred             CceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCch
Confidence            3489999999999999999999999999999999999976543    2111  1122221111              111


Q ss_pred             CCHHHH-------------HHHHHHHHHc------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHH
Q 028025           80 VPSEVT-------------IKLLQKAMEE------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR  140 (215)
Q Consensus        80 ~~~~~~-------------~~~~~~~~~~------~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R  140 (215)
                      ....+.             ...++..+..      ..+.++|+||.-  +-.     . -.+..++-|||++++|+..+|
T Consensus        83 vs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRD--iGT-----v-V~PdA~lKiFLtAS~e~RA~R  154 (222)
T COG0283          83 VSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRD--IGT-----V-VFPDAELKIFLTASPEERAER  154 (222)
T ss_pred             hhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCC--Ccc-----e-ECCCCCeEEEEeCCHHHHHHH
Confidence            111111             1111111111      013668889832  111     0 446778899999999996665


Q ss_pred             Hh-hc-cCCCCCCcHHHHHHHHH--HHhhcchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhC
Q 028025          141 IL-NR-NQGREDDNVETIRKRFK--VFLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFT  201 (215)
Q Consensus       141 ~~-~r-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~  201 (215)
                      .. +. ..+.... .+.+.+.+.  ++.+..+.... +......+++|+ +.+++|++++|..++.
T Consensus       155 R~~q~~~~g~~~~-~e~ll~eI~~RD~~D~~R~~~P-Lk~A~DA~~iDTs~msieeVv~~il~~~~  218 (222)
T COG0283         155 RYKQLQAKGFSEV-FEELLAEIKERDERDSNRAVAP-LKPAEDALLLDTSSLSIEEVVEKILELIR  218 (222)
T ss_pred             HHHHHHhccCcch-HHHHHHHHHHhhhccccCcCCC-CcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence            54 43 3332222 444444433  33333333211 233345667766 7899999999999886

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.74  E-value=1.2e-16  Score=116.09  Aligned_cols=162  Identities=17%  Similarity=0.167  Sum_probs=104.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC-----CCCCHH-------------
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE-------------   83 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-------------   83 (215)
                      .+|+|+|++||||||+++.|++ +|+.++++|.+.++.+..+.+....+.+.+..+     ..+...             
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~   81 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR   81 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence            5899999999999999999988 999999999999988776655444444333211     111111             


Q ss_pred             -----HHH----HHHHHHHHccC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028025           84 -----VTI----KLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (215)
Q Consensus        84 -----~~~----~~~~~~~~~~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~  153 (215)
                           ++.    ..+...+.... ...+++|.-.. .+  ..    ....+|.+|++++|+++..+|+.+|    ...+.
T Consensus        82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll-~e--~~----~~~~~D~vi~V~a~~e~~~~Rl~~R----~~~s~  150 (194)
T PRK00081         82 KKLEAILHPLIREEILEQLQEAESSPYVVLDIPLL-FE--NG----LEKLVDRVLVVDAPPETQLERLMAR----DGLSE  150 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHh-hc--CC----chhhCCeEEEEECCHHHHHHHHHHc----CCCCH
Confidence                 111    12222222222 25778885221 11  11    1234789999999999999999987    23456


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      +.+..|+.....    ... ..... .++|+++++++++.+++..+++
T Consensus       151 e~~~~ri~~Q~~----~~~-~~~~a-d~vI~N~g~~e~l~~qv~~i~~  192 (194)
T PRK00081        151 EEAEAIIASQMP----REE-KLARA-DDVIDNNGDLEELRKQVERLLQ  192 (194)
T ss_pred             HHHHHHHHHhCC----HHH-HHHhC-CEEEECCCCHHHHHHHHHHHHH
Confidence            677777765332    111 11222 3677777899999999988774

>PRK04182 cytidylate kinase; Provisional

Probab=99.74  E-value=4.9e-16  Score=111.84  Aligned_cols=167  Identities=20%  Similarity=0.222  Sum_probs=94.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      ++|+|+|++||||||+++.|++.+|+.+++.+++++............+...... .......+...+.. +.. .+.++
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~-~~~~~   77 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEE-DPEIDKEIDRRQLE-IAE-KEDNV   77 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhc-CchHHHHHHHHHHH-HHh-cCCCE
Confidence            4799999999999999999999999999999998888654422222222221111 11111111222221 211 24567


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchh-HHHHHH-----
Q 028025          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP-VVQYYE-----  175 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----  175 (215)
                      |++|.....     +   ....++++|||++|++++.+|+..|  ..  .......+.+......... ....|.     
T Consensus        78 Vi~g~~~~~-----~---~~~~~~~~V~l~a~~e~~~~Rl~~r--~~--~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~  145 (180)
T PRK04182         78 VLEGRLAGW-----M---AKDYADLKIWLKAPLEVRAERIAER--EG--ISVEEALEETIEREESEAKRYKEYYGIDIDD  145 (180)
T ss_pred             EEEEeecce-----E---ecCCCCEEEEEECCHHHHHHHHHhc--cC--CCHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            888742111     1   1122678999999999999999987  21  1122222211111100000 011111     


Q ss_pred             -hcCcEEEEcC-CCCHHHHHHHHHHhhCCCc
Q 028025          176 -AKGKVRKIDA-AKPVAEVFDAVKAVFTPKD  204 (215)
Q Consensus       176 -~~~~~~~id~-~~~~~e~~~~i~~~l~~~~  204 (215)
                       .... +++|+ ..+++++++.|...+....
T Consensus       146 ~~~~d-~~idt~~~~~~~~~~~I~~~~~~~~  175 (180)
T PRK04182        146 LSIYD-LVINTSRWDPEGVFDIILTAIDKLL  175 (180)
T ss_pred             ccccc-EEEECCCCCHHHHHHHHHHHHHHHh
Confidence             1222 55555 6799999999998886543

>PRK08356 hypothetical protein; Provisional

Probab=99.74  E-value=1.2e-16  Score=116.28  Aligned_cols=169  Identities=20%  Similarity=0.267  Sum_probs=100.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcC-CCc----HHHH------HHHHHcCCCCCH----HHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG-SEN----GTMI------QNMIKEGKIVPS----EVT   85 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~-~~~----~~~~------~~~~~~~~~~~~----~~~   85 (215)
                      .++|+|+|||||||||+|+.|+ ++|+.+++.++.++...... ...    ...+      ..++..+...++    ..+
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~   83 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL   83 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence            4689999999999999999996 58999999988654432221 100    0000      122222222221    333


Q ss_pred             HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC----cHHHHHHHHH
Q 028025           86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD----NVETIRKRFK  161 (215)
Q Consensus        86 ~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~----~~~~~~~~~~  161 (215)
                      ...+.+.+..  ...+++||+ .+..+...+.. .   ...+|||++|.+++.+|+.+|  +....    ..+.+.++..
T Consensus        84 ~~~~~~~~~~--~~~ividG~-r~~~q~~~l~~-~---~~~vi~l~~~~~~~~~Rl~~R--~~~~~~~~~~~e~~~~~~~  154 (195)
T PRK08356         84 IRLAVDKKRN--CKNIAIDGV-RSRGEVEAIKR-M---GGKVIYVEAKPEIRFERLRRR--GAEKDKGIKSFEDFLKFDE  154 (195)
T ss_pred             HHHHHHHhcc--CCeEEEcCc-CCHHHHHHHHh-c---CCEEEEEECCHHHHHHHHHhc--CCccccccccHHHHHHHHH
Confidence            3344444422  346999999 88888877775 2   247999999999999999988  32211    2333332221


Q ss_pred             HHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          162 VFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                       .+...... ..+.....++++ ++.+.+++.++|.+++..
T Consensus       155 -~~~~l~~~-~~~~~~aD~vI~-N~~~~e~~~~~i~~~~~~  192 (195)
T PRK08356        155 -WEEKLYHT-TKLKDKADFVIV-NEGTLEELRKKVEEILRE  192 (195)
T ss_pred             -HHHHhhhh-hhHHHhCcEEEE-CCCCHHHHHHHHHHHHHH
Confidence             11111011 112233444554 457999999999988753

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.74  E-value=2.7e-16  Score=112.65  Aligned_cols=171  Identities=21%  Similarity=0.323  Sum_probs=95.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (215)
                      |.+++.|+|+|+|||||||+|+.|++.+++.+++.|++++...  +....+.+.   ..+...........+......  
T Consensus         1 ~~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~--g~~~~~~~~---~~g~~~~~~~~~~~~~~l~~~--   73 (175)
T PRK00131          1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA--GKSIPEIFE---EEGEAAFRELEEEVLAELLAR--   73 (175)
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc--CCCHHHHHH---HHCHHHHHHHHHHHHHHHHhc--
Confidence            3567899999999999999999999999999999988776542  222222111   111111112223334433332  


Q ss_pred             CCeEEEeCC--CCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025           98 NDKFLIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (215)
Q Consensus        98 ~~~~iidg~--~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (215)
                      ...++..|.  .........+.     ....+|||.+|.+.+.+|+.+|.. ++........+.+..+.....+.   |.
T Consensus        74 ~~~vi~~g~~~~~~~~~r~~l~-----~~~~~v~l~~~~~~~~~R~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~---~~  144 (175)
T PRK00131         74 HNLVISTGGGAVLREENRALLR-----ERGTVVYLDASFEELLRRLRRDRN-RPLLQTNDPKEKLRDLYEERDPL---YE  144 (175)
T ss_pred             CCCEEEeCCCEeecHHHHHHHH-----hCCEEEEEECCHHHHHHHhcCCCC-CCcCCCCChHHHHHHHHHHHHHH---HH
Confidence            223444331  11122222221     234789999999999999987721 11111111122222222222222   33


Q ss_pred             hcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025          176 AKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (215)
Q Consensus       176 ~~~~~~~id~~~~~~e~~~~i~~~l~~~~  204 (215)
                      ....+++..++.+++++++.|.+.+....
T Consensus       145 ~~~dl~idt~~~~~~e~~~~I~~~v~~~~  173 (175)
T PRK00131        145 EVADITVETDGRSPEEVVNEILEKLEAAW  173 (175)
T ss_pred             hhcCeEEeCCCCCHHHHHHHHHHHHHhhc
Confidence            32334444458899999999999887544

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.73  E-value=1.5e-15  Score=108.33  Aligned_cols=163  Identities=16%  Similarity=0.173  Sum_probs=94.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      ++|+|+|++||||||+|+.|++.+|+.+++.|++++............+.........+ ...+...+.....  .+..+
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~--~~~~~   77 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEI-DKKIDRRIHEIAL--KEKNV   77 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHH-HHHHHHHHHHHHh--cCCCE
Confidence            47999999999999999999999999999999988876543221112222221111111 1111222222211  25678


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchh-HHHHHHh----
Q 028025          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP-VVQYYEA----  176 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----  176 (215)
                      |+||.....      .  ....+++.|||.+|++++.+|+.+|  +  ..+.+...+++..-...... ...+|..    
T Consensus        78 Vi~g~~~~~------~--~~~~~d~~v~v~a~~~~r~~R~~~R--~--~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~  145 (171)
T TIGR02173        78 VLESRLAGW------I--VREYADVKIWLKAPLEVRARRIAKR--E--GKSLTVARSETIEREESEKRRYLKFYGIDIDD  145 (171)
T ss_pred             EEEecccce------e--ecCCcCEEEEEECCHHHHHHHHHHc--c--CCCHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            889854211      1  1234678999999999999999987  2  22333333333221111111 1111211    


Q ss_pred             -cCcEEEEcC-CCCHHHHHHHHHHhh
Q 028025          177 -KGKVRKIDA-AKPVAEVFDAVKAVF  200 (215)
Q Consensus       177 -~~~~~~id~-~~~~~e~~~~i~~~l  200 (215)
                       ...-+++|+ ..++++ ++.|...+
T Consensus       146 ~~~ydl~i~t~~~~~~~-~~~i~~~~  170 (171)
T TIGR02173       146 LSIYDLVINTSNWDPNN-VDIILDAL  170 (171)
T ss_pred             cccccEEEECCCCCHHH-HHHHHHHh
Confidence             123356666 679999 99998765

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK13948 shikimate kinase; Provisional

Probab=99.73  E-value=3.7e-16  Score=111.67  Aligned_cols=166  Identities=16%  Similarity=0.148  Sum_probs=96.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (215)
                      ..+..|+++|++||||||+++.|++.+++.+++.|.++.+...  ....+.+.   ..|+....+.....++..+..  .
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g--~si~~if~---~~Ge~~fR~~E~~~l~~l~~~--~   80 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG--KSIPEIFR---HLGEAYFRRCEAEVVRRLTRL--D   80 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh--CCHHHHHH---HhCHHHHHHHHHHHHHHHHhc--C
Confidence            4568899999999999999999999999999999887766532  12222221   223323333334444444432  2


Q ss_pred             CeEEEe--CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028025           99 DKFLID--GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (215)
Q Consensus        99 ~~~iid--g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (215)
                      ..+|.=  |.+........+.+     ...+|||+++++++.+|+..+  .++-.......+++...+....++   |..
T Consensus        81 ~~VIa~GgG~v~~~~n~~~l~~-----~g~vV~L~~~~e~l~~Rl~~~--~RPll~~~~~~~~l~~l~~~R~~~---Y~~  150 (182)
T PRK13948         81 YAVISLGGGTFMHEENRRKLLS-----RGPVVVLWASPETIYERTRPG--DRPLLQVEDPLGRIRTLLNEREPV---YRQ  150 (182)
T ss_pred             CeEEECCCcEEcCHHHHHHHHc-----CCeEEEEECCHHHHHHHhcCC--CCCCCCCCChHHHHHHHHHHHHHH---HHh
Confidence            223321  23333333344433     245899999999999999544  332221111122333333333333   443


Q ss_pred             cCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          177 KGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       177 ~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                       ..+.+..++.++++++++|...+..
T Consensus       151 -a~~~i~t~~~~~~ei~~~i~~~l~~  175 (182)
T PRK13948        151 -ATIHVSTDGRRSEEVVEEIVEKLWA  175 (182)
T ss_pred             -CCEEEECCCCCHHHHHHHHHHHHHH
Confidence             3333333467999999999888854

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.73  E-value=1.7e-15  Score=111.34  Aligned_cols=168  Identities=18%  Similarity=0.266  Sum_probs=95.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC---eEeeHHHHHHHHHHcCCCcHHHHHHHHHc--CCCCCHHHH---------
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKE--GKIVPSEVT---------   85 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------   85 (215)
                      ++++|+|+|++||||||+++.|++.++.   .++..    +.  +.+...++.+...+..  ....+....         
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~----~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   75 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT----RE--PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ   75 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe----eC--CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence            4679999999999999999999998732   11111    00  1112233333333331  111111110         


Q ss_pred             --HHHHHHHHHccCCCeEEEeCCCCCH------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCC
Q 028025           86 --IKLLQKAMEESGNDKFLIDGFPRNE------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRE  149 (215)
Q Consensus        86 --~~~~~~~~~~~~~~~~iidg~~~~~------------~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~  149 (215)
                        ...+...+.  .+..+|+|.++.+.            .+...+...  ..+.||++|||++|++++.+|+.+|  +..
T Consensus        76 ~~~~~i~~~l~--~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R--~~~  151 (205)
T PRK00698         76 HLEEVIKPALA--RGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRAR--GEL  151 (205)
T ss_pred             HHHHHHHHHHH--CCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--CCc
Confidence              111222222  27899999655331            222232221  2367999999999999999999988  321


Q ss_pred             C---CcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          150 D---DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       150 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      .   .....+.+++...+.   .+..  .....++++|++.+++++.++|.+.+..
T Consensus       152 ~~~~~~~~~~~~~~~~~y~---~~~~--~~~~~~~~Id~~~~~e~v~~~i~~~i~~  202 (205)
T PRK00698        152 DRIEQEGLDFFERVREGYL---ELAE--KEPERIVVIDASQSLEEVHEDILAVIKA  202 (205)
T ss_pred             chhhhhhHHHHHHHHHHHH---HHHH--hCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence            1   111233334332221   1111  1223578899999999999999888754

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.72  E-value=2e-15  Score=110.37  Aligned_cols=167  Identities=19%  Similarity=0.308  Sum_probs=93.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC---CCCHHHH-------HHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK---IVPSEVT-------IKL   88 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~   88 (215)
                      ++|+|+|++||||||+++.|++.+   |+.++....      +.....+..+..++....   ..+....       ...
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   74 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH   74 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence            579999999999999999999999   554443311      001112222333222211   1111000       111


Q ss_pred             HHHHHH--ccCCCeEEEeCCCCCH------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCC-
Q 028025           89 LQKAME--ESGNDKFLIDGFPRNE------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDD-  151 (215)
Q Consensus        89 ~~~~~~--~~~~~~~iidg~~~~~------------~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~-  151 (215)
                      +.+.+.  ...+..+|+|.++..-            .+...+...  ....|+.+|||+++++++.+|+.+|  +.... 
T Consensus        75 ~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~  152 (200)
T cd01672          75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEAR--GRDDRD  152 (200)
T ss_pred             HHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--CCcchh
Confidence            111111  1238899999655331            122222221  3457999999999999999999988  33221 


Q ss_pred             --cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          152 --NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       152 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                        ....+.+++...+.   .+...+  ...++++|++.++++++++|...+.
T Consensus       153 ~~~~~~~~~~~~~~y~---~~~~~~--~~~~~~id~~~~~e~i~~~i~~~i~  199 (200)
T cd01672         153 EQEGLEFHERVREGYL---ELAAQE--PERIIVIDASQPLEEVLAEILKAIL  199 (200)
T ss_pred             hhhhHHHHHHHHHHHH---HHHHhC--CCeEEEEeCCCCHHHHHHHHHHHHh
Confidence              12233333322211   111111  1357899999999999999988774

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.72  E-value=8.8e-16  Score=111.95  Aligned_cols=166  Identities=16%  Similarity=0.244  Sum_probs=87.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC---eEee--------HHHHHHHHHHcCC--CcHHHHHHHHHcCCCCCHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY---THLS--------AGDLLRAEIKSGS--ENGTMIQNMIKEGKIVPSEVTIK   87 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~---~~i~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   87 (215)
                      +++|+|+|++||||||+++.|++.++.   .++.        .++.++..+....  .........+....  .......
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~--r~~~~~~   80 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAAD--RHEHLED   80 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHH--HHHHHHH
Confidence            578999999999999999999999953   2321        2233333321110  00000000000000  0001112


Q ss_pred             HHHHHHHccCCCeEEEeCCCCCH------------HHHHHHHHhcCC--CCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028025           88 LLQKAMEESGNDKFLIDGFPRNE------------ENRAAFEAVTKI--EPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (215)
Q Consensus        88 ~~~~~~~~~~~~~~iidg~~~~~------------~~~~~~~~~~~~--~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~  153 (215)
                      .+...+.  .+..+|+|.+..+-            .+...+.. ...  .|+++|||++|++++.+|+..|  +...  .
T Consensus        81 ~i~~~l~--~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~-~~~~~~~d~~i~l~~~~~~~~~R~~~r--~~~~--~  153 (195)
T TIGR00041        81 KIKPALA--EGKLVISDRYVFSSIAYQGGARGIDEDLVLELNE-DALGDMPDLTIYLDIDPEVALERLRKR--GELD--R  153 (195)
T ss_pred             HHHHHHh--CCCEEEECCcccHHHHHccccCCCCHHHHHHHHH-HhhCCCCCEEEEEeCCHHHHHHHHHhc--CCcc--h
Confidence            2233332  26789999654221            22233333 223  3999999999999999999988  3211  1


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHH
Q 028025          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV  196 (215)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i  196 (215)
                      +.. .....+........+.+.....+.++|++.+++++..+|
T Consensus       154 ~~~-~~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~~i  195 (195)
T TIGR00041       154 EEF-EKLDFFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI  195 (195)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence            111 111111111111122233244688999999999998764

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.71  E-value=6.8e-16  Score=106.34  Aligned_cols=154  Identities=18%  Similarity=0.299  Sum_probs=96.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      |.|+|+|.||+||||+|+.|+ .+|+.+++..++..+.- -.....+..     ....+..+.....++..+   .....
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~-~~~~~de~r-----~s~~vD~d~~~~~le~~~---~~~~~   70 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENG-LYTEYDELR-----KSVIVDVDKLRKRLEELL---REGSG   70 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcC-CeeccCCcc-----ceEEeeHHHHHHHHHHHh---ccCCe
Confidence            579999999999999999998 99999998877766530 000000000     001111222233333333   25678


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHH-HhhcchhHHHHHHhcCcE
Q 028025          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV-FLESSLPVVQYYEAKGKV  180 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  180 (215)
                      |+|++.     ..     ..+.+|++|.|.++++.+.+|+.+|  |-+.+   .+.+.+.. .....  +.+..+....+
T Consensus        71 Ivd~H~-----~h-----l~~~~dlVvVLR~~p~~L~~RLk~R--Gy~~e---KI~ENveAEi~~vi--~~EA~E~~~~v  133 (180)
T COG1936          71 IVDSHL-----SH-----LLPDCDLVVVLRADPEVLYERLKGR--GYSEE---KILENVEAEILDVI--LIEAVERFEAV  133 (180)
T ss_pred             Eeechh-----hh-----cCCCCCEEEEEcCCHHHHHHHHHHc--CCCHH---HHHHHHHHHHHHHH--HHHHHHhcCce
Confidence            889753     11     2224899999999999999999999  54432   22222221 11110  11222333567


Q ss_pred             EEEcC-CCCHHHHHHHHHHhhCC
Q 028025          181 RKIDA-AKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       181 ~~id~-~~~~~e~~~~i~~~l~~  202 (215)
                      ..+|. +.+++++++.|...+..
T Consensus       134 ~evdtt~~s~ee~~~~i~~ii~~  156 (180)
T COG1936         134 IEVDTTNRSPEEVAEEIIDIIGG  156 (180)
T ss_pred             EEEECCCCCHHHHHHHHHHHHcc
Confidence            88887 77999999999999984

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=99.71  E-value=2.1e-16  Score=112.52  Aligned_cols=32  Identities=28%  Similarity=0.507  Sum_probs=28.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      .-++|+|.|+.|+||||||+.||++++..++.
T Consensus         3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~   34 (216)
T COG1428           3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVFY   34 (216)
T ss_pred             cccEEEEecccccCHHHHHHHHHHHhCCceee
Confidence            35789999999999999999999999965543

>PRK13946 shikimate kinase; Provisional

Probab=99.71  E-value=1.8e-15  Score=109.17  Aligned_cols=166  Identities=20%  Similarity=0.267  Sum_probs=98.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (215)
                      .++.|+++|++||||||+++.|++.+|+.+++.|.......  +....+.+..   .+...........+......  +.
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~~--~~   81 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLKG--GP   81 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHhc--CC
Confidence            45689999999999999999999999999999987655542  2222222211   11111122223344443322  44


Q ss_pred             eEEEeCC--CCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCC----CCcHHHHHHHHHHHhhcchhHHHH
Q 028025          100 KFLIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRE----DDNVETIRKRFKVFLESSLPVVQY  173 (215)
Q Consensus       100 ~~iidg~--~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  173 (215)
                      .||..|.  +........+..     -.+.|||++|++++.+|+..|. +++    ....+.+.+.    .....++   
T Consensus        82 ~Vi~~ggg~~~~~~~r~~l~~-----~~~~v~L~a~~e~~~~Rl~~r~-~rp~~~~~~~~~~i~~~----~~~R~~~---  148 (184)
T PRK13946         82 LVLATGGGAFMNEETRAAIAE-----KGISVWLKADLDVLWERVSRRD-TRPLLRTADPKETLARL----MEERYPV---  148 (184)
T ss_pred             eEEECCCCCcCCHHHHHHHHc-----CCEEEEEECCHHHHHHHhcCCC-CCCcCCCCChHHHHHHH----HHHHHHH---
Confidence            5555542  233333333332     3478999999999999998871 111    1222222222    2222222   


Q ss_pred             HHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025          174 YEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK  206 (215)
Q Consensus       174 ~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~  206 (215)
                      |.. .++.+.++..+++++++.|...+.....+
T Consensus       149 y~~-~dl~i~~~~~~~~~~~~~i~~~i~~~~~~  180 (184)
T PRK13946        149 YAE-ADLTVASRDVPKEVMADEVIEALAAYLEK  180 (184)
T ss_pred             HHh-CCEEEECCCCCHHHHHHHHHHHHHHhhcc
Confidence            443 34556666889999999999988765544

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.71  E-value=1.4e-15  Score=110.72  Aligned_cols=166  Identities=15%  Similarity=0.168  Sum_probs=107.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCC-----HHH------------
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP-----SEV------------   84 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------------   84 (215)
                      ++|+|+|++||||||+++.|++ +|+.+++.|++.++.+..+......+.+.+..+...+     ...            
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~   80 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT   80 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence            4799999999999999999987 8999999999999888877655555555443322211     000            


Q ss_pred             ----------HHHHHHHHHHcc--C-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028025           85 ----------TIKLLQKAMEES--G-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (215)
Q Consensus        85 ----------~~~~~~~~~~~~--~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~  151 (215)
                                +...+.+.+...  . ...++++.-. ..+.  .    ....+|.+||+++|+++..+|+.+|    .+.
T Consensus        81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~pl-L~e~--g----~~~~~D~vi~V~a~~e~ri~Rl~~R----~g~  149 (200)
T PRK14734         81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPL-LVEK--G----LDRKMDLVVVVDVDVEERVRRLVEK----RGL  149 (200)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeec-eeEc--C----ccccCCeEEEEECCHHHHHHHHHHc----CCC
Confidence                      011122222111  1 2455555311 1110  1    1235789999999999999999987    234


Q ss_pred             cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                      +.+.+.+|+..+...    .. ..... .++|+++++++++.+++..+++....
T Consensus       150 s~e~~~~ri~~Q~~~----~~-k~~~a-d~vI~N~g~~e~l~~~v~~~~~~~~~  197 (200)
T PRK14734        150 DEDDARRRIAAQIPD----DV-RLKAA-DIVVDNNGTREQLLAQVDGLIAEILS  197 (200)
T ss_pred             CHHHHHHHHHhcCCH----HH-HHHhC-CEEEECcCCHHHHHHHHHHHHHHHHh
Confidence            567777777765442    11 11222 36788888999999999988765543

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.71  E-value=1.9e-15  Score=107.01  Aligned_cols=156  Identities=17%  Similarity=0.228  Sum_probs=91.3

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHH----HHcCCCcHH-HHHHHHHcCCCCCHHHHHHHHHHHHHccCC
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (215)
                      |+|.|++||||||+++.|++.++..+++.|++....    ...+..... ....+        .....+.+...+..  +
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~--~   70 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPW--------LQNLNDASTAAAAK--N   70 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHH--------HHHHHHHHHHHHhc--C
Confidence            578999999999999999999999999998864221    111111110 00000        00112222223322  3


Q ss_pred             CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcC
Q 028025           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG  178 (215)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (215)
                      ..+|+|...........+.. .. ....++||++|.+++.+|+..|  +......+.+..++..+..   +.    ....
T Consensus        71 ~~~Vi~~t~~~~~~r~~~~~-~~-~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~~---~~----~~e~  139 (163)
T TIGR01313        71 KVGIITCSALKRHYRDILRE-AE-PNLHFIYLSGDKDVILERMKAR--KGHFMKADMLESQFAALEE---PL----ADET  139 (163)
T ss_pred             CCEEEEecccHHHHHHHHHh-cC-CCEEEEEEeCCHHHHHHHHHhc--cCCCCCHHHHHHHHHHhCC---CC----CCCC
Confidence            34455543333333333333 22 2334799999999999999988  3322234455555443321   11    1113


Q ss_pred             cEEEEcCCCCHHHHHHHHHHhh
Q 028025          179 KVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       179 ~~~~id~~~~~~e~~~~i~~~l  200 (215)
                      .++++|++.+++++.++|...+
T Consensus       140 ~~~~id~~~~~~~~~~~~~~~~  161 (163)
T TIGR01313       140 DVLRVDIDQPLEGVEEDCIAVV  161 (163)
T ss_pred             ceEEEECCCCHHHHHHHHHHHH
Confidence            5799999999999999988765

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.71  E-value=2.6e-15  Score=108.89  Aligned_cols=168  Identities=17%  Similarity=0.138  Sum_probs=103.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHH-----HcCCCCCHH----------
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-----KEGKIVPSE----------   83 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----------   83 (215)
                      ..|+.|+|+|.+||||||+++.|++.+|+.+++.|.+.++.+.. ......+.+.+     .++ .+...          
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g-~idR~~L~~~vF~d~   81 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNK-QINRAMLRAIITESK   81 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCC-CcCHHHHHHHHhCCH
Confidence            45789999999999999999999999999999999988887654 22212222111     111 11111          


Q ss_pred             ------------HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028025           84 ------------VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (215)
Q Consensus        84 ------------~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~  151 (215)
                                  .+...+.+.+.......+++|. |...+.  .+.  ....+|.+|++.||+++..+|+.+|    ...
T Consensus        82 ~~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~ei-pLL~E~--~~~--~~~~~D~vi~V~a~~e~ri~Rl~~R----d~~  152 (204)
T PRK14733         82 EAKKWLEDYLHPVINKEIKKQVKESDTVMTIVDI-PLLGPY--NFR--HYDYLKKVIVIKADLETRIRRLMER----DGK  152 (204)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEe-chhhhc--cCc--hhhhCCEEEEEECCHHHHHHHHHHc----CCC
Confidence                        1122222333322234677774 111111  100  0124788999999999999999987    344


Q ss_pred             cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCC-CHHHHHHHHHHhhCCC
Q 028025          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAK-PVAEVFDAVKAVFTPK  203 (215)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~e~~~~i~~~l~~~  203 (215)
                      +.+.+.+|+..-...    .+ ..... -++|++++ +.+++..++.+.+..+
T Consensus       153 s~~~a~~ri~~Q~~~----ee-k~~~a-D~VI~N~g~~~~~l~~~~~~~~~~~  199 (204)
T PRK14733        153 NRQQAVAFINLQISD----KE-REKIA-DFVIDNTELTDQELESKLITTINEI  199 (204)
T ss_pred             CHHHHHHHHHhCCCH----HH-HHHhC-CEEEECcCCCHHHHHHHHHHHHHHH
Confidence            567777776543221    11 12222 26777777 9999999998877654

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.70  E-value=2.2e-15  Score=111.60  Aligned_cols=172  Identities=15%  Similarity=0.242  Sum_probs=92.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHH-HHHHHHH-HcCCCcHH------HHHHHHHcCC---CCCHHHHH-----
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAG-DLLRAEI-KSGSENGT------MIQNMIKEGK---IVPSEVTI-----   86 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~-~~~~~~~-~~~~~~~~------~~~~~~~~~~---~~~~~~~~-----   86 (215)
                      +|+|.|+.||||||+++.|+++++..++... ....... +.+...++      .+..+..+..   ........     
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~   80 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS   80 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence            5899999999999999999999987655332 1111000 01111111      1222332222   12211111     


Q ss_pred             --HHHHHHHH--ccCCCeEEEeCCCCCH------------------HHHHHHHHh---cCCCCcEEEEEecCHHHHHHHH
Q 028025           87 --KLLQKAME--ESGNDKFLIDGFPRNE------------------ENRAAFEAV---TKIEPEFVLFFDCSEEEMERRI  141 (215)
Q Consensus        87 --~~~~~~~~--~~~~~~~iidg~~~~~------------------~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~  141 (215)
                        +.+...+.  ...+..+|+|++..+.                  .+...+...   ..+.||++|||++|++.+.+|+
T Consensus        81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri  160 (219)
T cd02030          81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI  160 (219)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence              11111111  0126789999874331                  111111110   2368999999999999999999


Q ss_pred             hhccCCCCCC--cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCC--CCHHHHHHHHHH
Q 028025          142 LNRNQGREDD--NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAA--KPVAEVFDAVKA  198 (215)
Q Consensus       142 ~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~e~~~~i~~  198 (215)
                      .+|  ++..+  ...+..++++..+..+-  ...|.....++++|++  .++++++++|..
T Consensus       161 ~~R--~~~~e~~~~~~yl~~l~~~y~~~~--~~~~~~~~~~i~id~~~~~~~e~i~~~I~~  217 (219)
T cd02030         161 KKR--GDPHEMKVTSAYLQDIENAYKKTF--LPEISEHSEVLQYDWTEAGDTEKVVEDIEY  217 (219)
T ss_pred             HHc--CCchhhcccHHHHHHHHHHHHHHH--HHhhccCCCEEEEeCCChhhHHHHHHHHHc
Confidence            988  43221  22233334443332110  1113345578999987  788888877654

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK08118 topology modulation protein; Reviewed

Probab=99.70  E-value=5e-16  Score=110.02  Aligned_cols=98  Identities=20%  Similarity=0.307  Sum_probs=70.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      +.|+|+|+|||||||+|+.|++.+++.+++.|+++...   +             ....+.+....++...+.   ...+
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~---~-------------w~~~~~~~~~~~~~~~~~---~~~w   62 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP---N-------------WEGVPKEEQITVQNELVK---EDEW   62 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc---C-------------CcCCCHHHHHHHHHHHhc---CCCE
Confidence            46999999999999999999999999999998876531   0             022233333444444443   4579


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      |+||.+....     .. ....+|.+|||++|.+++..|+.+|
T Consensus        63 VidG~~~~~~-----~~-~l~~~d~vi~Ld~p~~~~~~R~~~R   99 (167)
T PRK08118         63 IIDGNYGGTM-----DI-RLNAADTIIFLDIPRTICLYRAFKR   99 (167)
T ss_pred             EEeCCcchHH-----HH-HHHhCCEEEEEeCCHHHHHHHHHHH
Confidence            9999643211     11 2235899999999999999999888

>PRK13947 shikimate kinase; Provisional

Probab=99.70  E-value=1.6e-15  Score=108.35  Aligned_cols=162  Identities=16%  Similarity=0.254  Sum_probs=91.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEE
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (215)
                      .|+|.|+|||||||+++.||+.+|+.+++.|.+++...  +....+.+..   .+..........+++. +... ...++
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~--g~~~~~~~~~---~ge~~~~~~e~~~~~~-l~~~-~~~vi   75 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT--GMTVAEIFEK---DGEVRFRSEEKLLVKK-LARL-KNLVI   75 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc--CCcHHHHHHH---hChHHHHHHHHHHHHH-Hhhc-CCeEE
Confidence            49999999999999999999999999999988776652  2222221111   1111111121223332 2221 23333


Q ss_pred             EeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcE
Q 028025          103 IDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV  180 (215)
Q Consensus       103 idg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (215)
                      --|  ++........+.+     .+.+|||+++++.+.+|+..| ..++........+++........+   +|. ...+
T Consensus        76 ~~g~g~vl~~~~~~~l~~-----~~~vv~L~~~~~~l~~Rl~~r-~~rp~~~~~~~~~~i~~~~~~r~~---~y~-~ad~  145 (171)
T PRK13947         76 ATGGGVVLNPENVVQLRK-----NGVVICLKARPEVILRRVGKK-KSRPLLMVGDPEERIKELLKEREP---FYD-FADY  145 (171)
T ss_pred             ECCCCCcCCHHHHHHHHh-----CCEEEEEECCHHHHHHHhcCC-CCCCCCCCCChHHHHHHHHHHHHH---HHH-hcCE
Confidence            222  2333334444433     246999999999999999876 122211112222333322222222   233 2234


Q ss_pred             EEEcCCCCHHHHHHHHHH-hhC
Q 028025          181 RKIDAAKPVAEVFDAVKA-VFT  201 (215)
Q Consensus       181 ~~id~~~~~~e~~~~i~~-~l~  201 (215)
                      ++.+++.+++++++.|.. ++.
T Consensus       146 ~Idt~~~~~~~i~~~I~~~~~~  167 (171)
T PRK13947        146 TIDTGDMTIDEVAEEIIKAYLK  167 (171)
T ss_pred             EEECCCCCHHHHHHHHHHHHHh
Confidence            555568899999999988 554

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.69  E-value=4.9e-15  Score=105.75  Aligned_cols=164  Identities=18%  Similarity=0.281  Sum_probs=91.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      ..|+|+|++||||||+++.|++.+|+.+++.|.+.....  +....+.+.   ..+..........++. .+..  ...+
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~--g~~~~~~~~---~~g~~~~~~~e~~~~~-~~~~--~~~v   74 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS--NMTVAEIVE---REGWAGFRARESAALE-AVTA--PSTV   74 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh--CCCHHHHHH---HHCHHHHHHHHHHHHH-HhcC--CCeE
Confidence            458899999999999999999999999999988776542  222222111   1111111111123332 2221  2333


Q ss_pred             EEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025          102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN--QGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (215)
Q Consensus       102 iidg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (215)
                      |.-|  +.........+..     .+++|||++|++++.+|+..|.  ..++..........+..+.+...   ..|...
T Consensus        75 i~~ggg~vl~~~~~~~l~~-----~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~---~~y~~~  146 (171)
T PRK03731         75 IATGGGIILTEENRHFMRN-----NGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAERE---ALYREV  146 (171)
T ss_pred             EECCCCccCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHH---HHHHHh
Confidence            3333  2222333333332     5579999999999999998761  11221111111122222222212   223332


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          178 GKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       178 ~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      . .+++|++.++++++++|...+..
T Consensus       147 a-~~~Id~~~~~e~v~~~i~~~l~~  170 (171)
T PRK03731        147 A-HHIIDATQPPSQVVSEILSALAQ  170 (171)
T ss_pred             C-CEEEcCCCCHHHHHHHHHHHHhc
Confidence            2 37888889999999999988753

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.69  E-value=1.4e-15  Score=111.57  Aligned_cols=167  Identities=20%  Similarity=0.273  Sum_probs=102.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHH----H--c--CC-CCCHHH-----
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI----K--E--GK-IVPSEV-----   84 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~--~--~~-~~~~~~-----   84 (215)
                      ..+++|+|+|++||||||+++.|++ +|+.++++|.+.++....+......+...+    .  .  +. .+....     
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v   81 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV   81 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence            3468899999999999999999986 899999998887776544332222222111    0  0  11 011111     


Q ss_pred             -----------------HHHHHHHHHHcc---CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           85 -----------------TIKLLQKAMEES---GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        85 -----------------~~~~~~~~~~~~---~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                                       ....+.+.+...   +...+++|+- ...+.  .    ....+|.+|++.+|++++.+|+.+|
T Consensus        82 f~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~p-LL~e~--~----~~~~~d~ii~V~a~~e~~~~Rl~~R  154 (208)
T PRK14731         82 FSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAA-ILFES--G----GDAGLDFIVVVAADTELRLERAVQR  154 (208)
T ss_pred             hCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEee-eeeec--C----chhcCCeEEEEECCHHHHHHHHHHc
Confidence                             011222222211   1246666652 11111  1    1234789999999999999999988


Q ss_pred             cCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          145 NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                        +.  ...+.+.+|+..........     ... .++|+++++.+++.+++.++++..
T Consensus       155 --~~--~s~e~~~~Ri~~q~~~~~~~-----~~a-d~vI~N~g~~e~l~~~i~~~~~~~  203 (208)
T PRK14731        155 --GM--GSREEIRRRIAAQWPQEKLI-----ERA-DYVIYNNGTLDELKAQTEQLYQVL  203 (208)
T ss_pred             --CC--CCHHHHHHHHHHcCChHHHH-----HhC-CEEEECCCCHHHHHHHHHHHHHHH
Confidence              43  35678888887644432221     222 356777889999999999887543

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=99.69  E-value=5.5e-15  Score=100.98  Aligned_cols=172  Identities=17%  Similarity=0.266  Sum_probs=109.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHHHHHc--CCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKS--GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (215)
                      +++++++|.||+||||+++.+.+.+ .+.+++.|+++.+....  .....+.+       ..+|.+.+..+...+.....
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~-------Rklp~e~Q~~lq~~Aa~rI~   76 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEM-------RKLPLENQRELQAEAAKRIA   76 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHH-------hcCCHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999 88899999998776544  23333322       34555555554444333222


Q ss_pred             --CCeEEEeCCCCCH------HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHhhcch
Q 028025           98 --NDKFLIDGFPRNE------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESSL  168 (215)
Q Consensus        98 --~~~~iidg~~~~~------~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~~~  168 (215)
                        ..-+|+|++....      ...-.|-- ....||.++.|+++++....|..+. .+.+..++.+++..+++.-+...-
T Consensus        77 ~~~~~iivDtH~~IkTP~GylpgLP~~Vl-~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~  155 (189)
T COG2019          77 EMALEIIVDTHATIKTPAGYLPGLPSWVL-EELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAM  155 (189)
T ss_pred             HhhhceEEeccceecCCCccCCCCcHHHH-HhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHH
Confidence              3338889643211      11111111 3467999999999999977776665 556777777777766544332211


Q ss_pred             hHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025          169 PVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       169 ~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~~  202 (215)
                      .  ........+.++.+ ++.+++..+.|...|..
T Consensus       156 a--~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~  188 (189)
T COG2019         156 A--YAILLGATVKIVENHEGDPEEAAEEIVELLDR  188 (189)
T ss_pred             H--HHHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            1  11112234555555 67899999999888753

>PRK07933 thymidylate kinase; Validated

Probab=99.69  E-value=4.7e-15  Score=109.10  Aligned_cols=171  Identities=13%  Similarity=0.124  Sum_probs=93.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC---CeEee----------HHHHHHHHHHcCCC---cHHHHHHHHHcCCCCCHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFG---YTHLS----------AGDLLRAEIKSGSE---NGTMIQNMIKEGKIVPSEVT   85 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~---~~~i~----------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   85 (215)
                      ++|+|+|+.||||||+++.|++.+.   ..++-          .++.++..+.....   ........+-.....  +. 
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~--~~-   77 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRA--GA-   77 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhh--hh-
Confidence            5899999999999999999999994   22221          13445554443110   011111111111110  00 


Q ss_pred             HHHHHHHHHccCCCeEEEeCCCCCHH-----------------HHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccC
Q 028025           86 IKLLQKAMEESGNDKFLIDGFPRNEE-----------------NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQ  146 (215)
Q Consensus        86 ~~~~~~~~~~~~~~~~iidg~~~~~~-----------------~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~  146 (215)
                      ...+..++..  +..||.|+|..+--                 +...+...  ..+.||++|||++|++++.+|+.+|  
T Consensus        78 ~~~I~p~l~~--g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R--  153 (213)
T PRK07933         78 RDELAGLLAA--HDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRR--  153 (213)
T ss_pred             HHHHHHHHhC--CCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhh--
Confidence            1223334332  78999998764421                 11112110  2247999999999999999999988  


Q ss_pred             CCCC--CcHHHHHHHHHHHhhcchhHHHH-HHh--cCcEEEEcCCCCHHHHHHHHHHhh
Q 028025          147 GRED--DNVETIRKRFKVFLESSLPVVQY-YEA--KGKVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       147 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~id~~~~~~e~~~~i~~~l  200 (215)
                      ++..  ...+.+++ -..|....+..+.. ...  +..++++|++.+++++.++|.+.+
T Consensus       154 ~~~~~~~~~d~~E~-~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~  211 (213)
T PRK07933        154 AAQDADRARDAYER-DDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL  211 (213)
T ss_pred             ccccCCcccccccc-cHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence            3210  00000000 01122222222211 121  336788999999999999998765

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.68  E-value=4.2e-15  Score=105.89  Aligned_cols=164  Identities=16%  Similarity=0.249  Sum_probs=92.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (215)
                      +...|+|.|++||||||+++.|++.+++.+++.|..+....  +....+.+..   .+.........+.+.... .. +.
T Consensus         3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~--g~~i~~~~~~---~g~~~fr~~e~~~l~~l~-~~-~~   75 (172)
T PRK05057          3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADIGWVFDV---EGEEGFRDREEKVINELT-EK-QG   75 (172)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh--CcCHhHHHHH---hCHHHHHHHHHHHHHHHH-hC-CC
Confidence            45679999999999999999999999999999987655432  2222222111   111111111233444422 21 23


Q ss_pred             eEEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCC-CCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025          100 KFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGRE-DDNVETIRKRFKVFLESSLPVVQYYE  175 (215)
Q Consensus       100 ~~iidg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (215)
                      .++.-|  .+........+..     .+.+|||++|.+++.+|+..+ .++-. ......   .+........++   |.
T Consensus        76 ~vi~~ggg~v~~~~~~~~l~~-----~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~---~~~~l~~~R~~~---Y~  144 (172)
T PRK05057         76 IVLATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRDKKRPLLQVDDPRE---VLEALANERNPL---YE  144 (172)
T ss_pred             EEEEcCCchhCCHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHH---HHHHHHHHHHHH---HH
Confidence            333222  2222233333333     357999999999999999765 22111 111222   233333333444   44


Q ss_pred             hcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          176 AKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       176 ~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      ....+.+..+..+++++++.|.+.+.
T Consensus       145 ~~Ad~~idt~~~s~~ei~~~i~~~l~  170 (172)
T PRK05057        145 EIADVTIRTDDQSAKVVANQIIHMLE  170 (172)
T ss_pred             hhCCEEEECCCCCHHHHHHHHHHHHh
Confidence            43434443346799999999988775

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.68  E-value=1.6e-14  Score=104.61  Aligned_cols=173  Identities=13%  Similarity=0.215  Sum_probs=102.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcH-HHHHHHHHc----CCCCCHHHH---------
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG-TMIQNMIKE----GKIVPSEVT---------   85 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~---------   85 (215)
                      .+++|+|+|+|||||||+|+.|++++++.++..+|++|+.+....... ....+.+..    +........         
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~   81 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA   81 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999999877533221 000110000    111111111         


Q ss_pred             -----HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccC-CCCCCcHHHHHH
Q 028025           86 -----IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQ-GREDDNVETIRK  158 (215)
Q Consensus        86 -----~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~e~~~~R~~~r~~-~~~~~~~~~~~~  158 (215)
                           ..++...+.  .|..+|+|+............. .  . ..++++.+ +++++.+|+..|.. .......+.+.+
T Consensus        82 v~~~L~~va~~~l~--~G~sVIvEgv~l~p~~~~~~~~-~--~-v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~  155 (197)
T PRK12339         82 IMPGINRVIRRALL--NGEDLVIESLYFHPPMIDENRT-N--N-IRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAE  155 (197)
T ss_pred             HHHHHHHHHHHHHH--cCCCEEEEecCcCHHHHHHHHh-c--C-eEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHH
Confidence                 122222332  2899999986554444432222 1  2 24566654 67888899999821 112233444555


Q ss_pred             HHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhh
Q 028025          159 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l  200 (215)
                      .+...+....-+.+..++. ++-++++. ++++.++.+...+
T Consensus       156 ~~~~ir~i~~~l~~~a~~~-~i~~i~~~-~~~~~~~~~~~~~  195 (197)
T PRK12339        156 HLPEYRTIMDYSIADARGY-NIKVIDTD-NYREARNPLLDPI  195 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHc-CCCeecCc-cHHHHHHHHHHHh
Confidence            5555554444444443333 46677664 8888888776654

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.67  E-value=5.6e-15  Score=106.80  Aligned_cols=168  Identities=15%  Similarity=0.165  Sum_probs=99.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHH----HHc-CCCcHHHHHHHHHcCCCCCHHHH-------HHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKS-GSENGTMIQNMIKEGKIVPSEVT-------IKL   88 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~   88 (215)
                      ..+|+|.||+||||||+++.|+..++..++..+..+...    ... -....+.+......+.+......       ..-
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~   81 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIE   81 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHH
Confidence            357999999999999999999998875544433221111    000 11122223333333322111000       012


Q ss_pred             HHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcch
Q 028025           89 LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSL  168 (215)
Q Consensus        89 ~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~  168 (215)
                      ++..+..  +..+|++|..   .......+ ....+..+|||++|.+++.+|+.+|  ++.  ..+.+.+|+....    
T Consensus        82 ~~~~l~~--g~~VI~~G~~---~~~~~~~~-~~~~~~~vi~l~~s~e~l~~RL~~R--~~~--~~~~i~~rl~r~~----  147 (186)
T PRK10078         82 IDLWLHA--GFDVLVNGSR---AHLPQARA-RYQSALLPVCLQVSPEILRQRLENR--GRE--NASEINARLARAA----  147 (186)
T ss_pred             HHHHHhC--CCEEEEeChH---HHHHHHHH-HcCCCEEEEEEeCCHHHHHHHHHHh--CCC--CHHHHHHHHHHhh----
Confidence            4444433  6778888752   22223333 3345566899999999999999977  332  4456777764321    


Q ss_pred             hHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcccc
Q 028025          169 PVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKV  207 (215)
Q Consensus       169 ~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~~  207 (215)
                          .+. ....+++|++.++++++++|...+.....+.
T Consensus       148 ----~~~-~ad~~vi~~~~s~ee~~~~i~~~l~~~~~~~  181 (186)
T PRK10078        148 ----RYQ-PQDCHTLNNDGSLRQSVDTLLTLLHLSQKEK  181 (186)
T ss_pred             ----hhc-cCCEEEEeCCCCHHHHHHHHHHHHhhcCccc
Confidence                122 2346778888899999999999998665544

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.66  E-value=9.5e-15  Score=105.61  Aligned_cols=166  Identities=15%  Similarity=0.188  Sum_probs=102.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCC----------------CCHH-
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI----------------VPSE-   83 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~-   83 (215)
                      .++|.|+|.|||||||+++.+++ +|+.+++.|+..++.+..+.+....+...+.....                .... 
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~   80 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA   80 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence            57899999999999999999988 99999999999998877765444333333221111                0000 


Q ss_pred             ------HHHHHHHHHH----HccCCCeEEEeCCCCCHHHHHHHHHhcC-CCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025           84 ------VTIKLLQKAM----EESGNDKFLIDGFPRNEENRAAFEAVTK-IEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (215)
Q Consensus        84 ------~~~~~~~~~~----~~~~~~~~iidg~~~~~~~~~~~~~~~~-~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~  152 (215)
                            +...++...+    .......+++|        ...+.+... ..+|.+|++.||+++..+|+.+|  +  ..+
T Consensus        81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~e--------iplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R--~--~~~  148 (201)
T COG0237          81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLE--------IPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKR--D--GLD  148 (201)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhCCceEEE--------chHHHhccccccCCEEEEEECCHHHHHHHHHhc--C--CCC
Confidence                  0011222221    11112244444        233333111 12789999999999999999998  4  444


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                      .+....++......    .+.+.-.  -++++++.+++++.+++...++....
T Consensus       149 ~e~~~~~~~~Q~~~----~ek~~~a--d~vi~n~~~i~~l~~~i~~~~~~~~~  195 (201)
T COG0237         149 EEDAEARLASQRDL----EEKLALA--DVVIDNDGSIENLLEQIEKLLKELLG  195 (201)
T ss_pred             HHHHHHHHHhcCCH----HHHHhhc--CChhhcCCCHHHHHHHHHHHHHHHHh
Confidence            55555554443322    2222222  36788888999999999888765543

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=99.66  E-value=2.2e-15  Score=109.06  Aligned_cols=160  Identities=21%  Similarity=0.321  Sum_probs=88.4

Q ss_pred             EEcCCCCChHHHHHHHHHHhC---CeEee--------HHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025           26 VLGGPGSGKGTQCANIVEHFG---YTHLS--------AGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (215)
Q Consensus        26 i~G~~gsGKsTla~~La~~~~---~~~i~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (215)
                      |+|+.||||||+++.|++.+.   ..++.        .+..++..+.............+.....  .......+...+.
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r--~~~~~~~I~~~l~   78 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADR--AWHLARVIRPALK   78 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHH--HHHHHHTHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHH--HHHHHHHHHHHHc
Confidence            689999999999999999994   22111        2444555444222222222111110000  0011123333333


Q ss_pred             ccCCCeEEEeCCCCC------------HHHHHHHHHhcCC--CCcEEEEEecCHHHHHHHHhhccC-CCCCCcHHHHHHH
Q 028025           95 ESGNDKFLIDGFPRN------------EENRAAFEAVTKI--EPEFVLFFDCSEEEMERRILNRNQ-GREDDNVETIRKR  159 (215)
Q Consensus        95 ~~~~~~~iidg~~~~------------~~~~~~~~~~~~~--~~~~~i~L~~~~e~~~~R~~~r~~-~~~~~~~~~~~~~  159 (215)
                      .  +..||+|.|..+            ..+...+.. ...  .||++|||+++++++.+|+..|.. ............+
T Consensus        79 ~--g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~-~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~  155 (186)
T PF02223_consen   79 R--GKIVICDRYIYSTLAYQGAKGELDIDWIWRLNK-DIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRR  155 (186)
T ss_dssp             T--TSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHH-HHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHH
T ss_pred             C--CCEEEEechhHHHHHhCccccCCcchhhhHHHH-HhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHH
Confidence            2  899999964321            233333333 222  999999999999999999999822 1111222222222


Q ss_pred             HHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHH
Q 028025          160 FKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV  196 (215)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i  196 (215)
                      ..   ...   .+.....++++++|++.++++++++|
T Consensus       156 ~~---~~y---~~l~~~~~~~~iid~~~~~e~v~~~I  186 (186)
T PF02223_consen  156 VR---EAY---LELAKDPNNWVIIDASRSIEEVHEQI  186 (186)
T ss_dssp             HH---HHH---HHHHHTTTTEEEEETTS-HHHHHHHH
T ss_pred             HH---HHH---HHHHcCCCCEEEEECCCCHHHHHhhC
Confidence            22   221   12223456799999999999999886

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.66  E-value=2.5e-15  Score=104.08  Aligned_cols=113  Identities=20%  Similarity=0.366  Sum_probs=74.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcH---HHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG---TMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (215)
                      +|+++|+|||||||+++.|++.+++.+++.|++.........+..   .......       ...+...+...+..  +.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~--g~   71 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERA-------YQILNAAIRKALRN--GN   71 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHH-------HHHHHHHHHHHHHT--T-
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHH-------HHHHHHHHHHHHHc--CC
Confidence            689999999999999999999999999999886665432211110   0010000       11223444444433  77


Q ss_pred             eEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025          100 KFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      .+|+|+.......+..+..+  ....+..+|+++++.+++.+|+..|
T Consensus        72 ~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R  118 (143)
T PF13671_consen   72 SVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQR  118 (143)
T ss_dssp             EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTT
T ss_pred             CceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhc
Confidence            89999766665555555553  3333556999999999999999999

...

>PLN02422 dephospho-CoA kinase

Probab=99.66  E-value=9.4e-15  Score=107.76  Aligned_cols=163  Identities=19%  Similarity=0.142  Sum_probs=102.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHc-----CCCCCHHHH------------
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT------------   85 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~------------   85 (215)
                      +|+|+|.+||||||+++.|+ ++|+.++++|++.++.+..+......+.+.+..     ...+....+            
T Consensus         3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~   81 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQ   81 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence            69999999999999999998 689999999999999888765433333332211     111111111            


Q ss_pred             ------HHHHHHHH----Hc---cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025           86 ------IKLLQKAM----EE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (215)
Q Consensus        86 ------~~~~~~~~----~~---~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~  152 (215)
                            ...+...+    ..   .....+++|.- ...+  ..    ....+|.+|++++|+++..+|+.+|  +  ..+
T Consensus        82 ~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eip-LL~E--~~----~~~~~D~vI~V~a~~e~ri~RL~~R--~--g~s  150 (232)
T PLN02422         82 LLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIP-LLFE--TK----MDKWTKPVVVVWVDPETQLERLMAR--D--GLS  150 (232)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeh-hhhh--cc----hhhhCCEEEEEECCHHHHHHHHHHc--C--CCC
Confidence                  12221111    11   11347777741 1111  11    1234789999999999999999988  2  455


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      .+.+.+|+......    .. ..... .++|+++++.+++..++.++++..
T Consensus       151 ~eea~~Ri~~Q~~~----ee-k~~~A-D~VI~N~gs~e~L~~qv~~ll~~l  195 (232)
T PLN02422        151 EEQARNRINAQMPL----DW-KRSKA-DIVIDNSGSLEDLKQQFQKVLEKI  195 (232)
T ss_pred             HHHHHHHHHHcCCh----hH-HHhhC-CEEEECCCCHHHHHHHHHHHHHHH
Confidence            67777776443221    11 12222 367778889999999998777554

>PRK00625 shikimate kinase; Provisional

Probab=99.66  E-value=1e-14  Score=103.54  Aligned_cols=112  Identities=14%  Similarity=0.177  Sum_probs=68.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcC--CCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG--SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (215)
                      +.|+|+|+|||||||+++.|++++++.+++.|++++......  ....+.+.   ..|...........+.. +..  ..
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~---~~Ge~~fr~~E~~~l~~-l~~--~~   74 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQ---AYGEEGFCREEFLALTS-LPV--IP   74 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHH---HHCHHHHHHHHHHHHHH-hcc--CC
Confidence            359999999999999999999999999999999888753221  11222221   12222222222333332 222  33


Q ss_pred             eEEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025          100 KFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus       100 ~~iidg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      .+|..|  .+...+....+.     ....+|||++|.+++.+|+.+|
T Consensus        75 ~VIs~GGg~~~~~e~~~~l~-----~~~~Vv~L~~~~e~l~~Rl~~R  116 (173)
T PRK00625         75 SIVALGGGTLMIEPSYAHIR-----NRGLLVLLSLPIATIYQRLQKR  116 (173)
T ss_pred             eEEECCCCccCCHHHHHHHh-----cCCEEEEEECCHHHHHHHHhcC
Confidence            344333  222233323322     2356999999999999999988

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.66  E-value=4e-15  Score=107.89  Aligned_cols=163  Identities=16%  Similarity=0.165  Sum_probs=101.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC-----CCCCHH--------------
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE--------------   83 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--------------   83 (215)
                      +|+|+|++||||||+++.|++ +|+.+++.|.+.+..+..+......+.+.+...     ..+...              
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~   79 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK   79 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence            489999999999999999965 799999999999988776655444444332111     111111              


Q ss_pred             ----HHHHHH----HHHHHcc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028025           84 ----VTIKLL----QKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (215)
Q Consensus        84 ----~~~~~~----~~~~~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~  154 (215)
                          ++...+    ...+... .+..+++|. |...+.  .    ....+|.+|++.+|+++..+|+.+|    ...+.+
T Consensus        80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~-pLL~E~--~----~~~~~D~vi~V~a~~e~r~~RL~~R----~g~s~e  148 (196)
T PRK14732         80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEV-PLLFET--D----AYTLCDATVTVDSDPEESILRTISR----DGMKKE  148 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEe-eeeeEc--C----chhhCCEEEEEECCHHHHHHHHHHc----CCCCHH
Confidence                112222    2222221 134566664 222221  1    1224789999999999999999988    334567


Q ss_pred             HHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      .+..|+..-.    +... ...... ++++++++.+++..++..+++..
T Consensus       149 ~a~~ri~~Q~----~~~~-k~~~aD-~vI~N~~~~~~l~~~v~~l~~~~  191 (196)
T PRK14732        149 DVLARIASQL----PITE-KLKRAD-YIVRNDGNREGLKEECKILYSTL  191 (196)
T ss_pred             HHHHHHHHcC----CHHH-HHHhCC-EEEECCCCHHHHHHHHHHHHHHH
Confidence            7777776522    2222 233333 56677779999999999877543

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.64  E-value=1.2e-14  Score=108.27  Aligned_cols=166  Identities=14%  Similarity=0.069  Sum_probs=103.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHc-----CCCCCHHHH-----------
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT-----------   85 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----------   85 (215)
                      ++|+|+|.+||||||+++.|++.+|+.++++|.+.++.+..+......+.+.+..     ...+....+           
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~   81 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR   81 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            5799999999999999999999899999999999999877665443333332211     111111111           


Q ss_pred             -----------HHHHHHHHH------------ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh
Q 028025           86 -----------IKLLQKAME------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL  142 (215)
Q Consensus        86 -----------~~~~~~~~~------------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~  142 (215)
                                 ...+.+.+.            ..+...+++|.-. .++.  .+   ....+|.++++.+|.++..+|+.
T Consensus        82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPL-L~E~--~~---~~~~~D~iv~V~a~~e~ri~RL~  155 (244)
T PTZ00451         82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPT-LFET--KT---FTYFVSASVVVSCSEERQIERLR  155 (244)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEech-hhcc--Cc---hhhcCCeEEEEECCHHHHHHHHH
Confidence                       111111221            1112477888421 1110  00   11246899999999999999999


Q ss_pred             hccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCC--CCHHHHHHHHHHhhCCC
Q 028025          143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAA--KPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       143 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~e~~~~i~~~l~~~  203 (215)
                      +|    .+.+.+++.+|+..-..    ... ...... ++|+++  ++.+++..++..++...
T Consensus       156 ~R----~g~s~eea~~Ri~~Q~~----~~e-k~~~aD-~VI~N~~~g~~~~L~~~v~~~~~~~  208 (244)
T PTZ00451        156 KR----NGFSKEEALQRIGSQMP----LEE-KRRLAD-YIIENDSADDLDELRGSVCDCVAWM  208 (244)
T ss_pred             Hc----CCCCHHHHHHHHHhCCC----HHH-HHHhCC-EEEECCCCCCHHHHHHHHHHHHHHH
Confidence            87    34566788888765221    111 223333 455566  89999999999877543

>TIGR00152 dephospho-CoA kinase

Probab=99.64  E-value=1.1e-14  Score=105.38  Aligned_cols=157  Identities=18%  Similarity=0.268  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHH------cCCCCCH--------------
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK------EGKIVPS--------------   82 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--------------   82 (215)
                      +|+|+|.+||||||+++.|++..++.+++.|++.++.+..+.+....+.+.+.      +|. +..              
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~-idr~~L~~~vf~~~~~~   79 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGE-LDRKALGERVFNDPEEL   79 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCC-CCHHHHHHHHhCCHHHH
Confidence            48999999999999999999987799999999999888776544333332221      111 111              


Q ss_pred             --------HHHHHHHHHHHHccC--CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025           83 --------EVTIKLLQKAMEESG--NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (215)
Q Consensus        83 --------~~~~~~~~~~~~~~~--~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~  152 (215)
                              ..+...+.+.+....  +..++++.... .+  ..    ....+|.++++.++.+++.+|+.+|  +  ..+
T Consensus        80 ~~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll-~e--~~----~~~~~D~vv~V~~~~~~~~~Rl~~R--~--~~s  148 (188)
T TIGR00152        80 KWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLL-FE--NK----LRSLCDRVIVVDVSPQLQLERLMQR--D--NLT  148 (188)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHh-hh--CC----cHHhCCEEEEEECCHHHHHHHHHHc--C--CCC
Confidence                    011122222232221  34677764221 11  01    1224788999999999999999988  2  455


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHH
Q 028025          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK  197 (215)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~  197 (215)
                      .+.+.+|+.....    ... ..... -++|+++++++++..++.
T Consensus       149 ~~~~~~r~~~q~~----~~~-~~~~a-d~vI~N~~~~e~l~~~~~  187 (188)
T TIGR00152       149 EEEVQKRLASQMD----IEE-RLARA-DDVIDNSATLADLVKQLE  187 (188)
T ss_pred             HHHHHHHHHhcCC----HHH-HHHhC-CEEEECCCCHHHHHHHHh
Confidence            6777777766432    111 12222 366777889999988875

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.64  E-value=2.1e-14  Score=96.22  Aligned_cols=154  Identities=19%  Similarity=0.234  Sum_probs=101.0

Q ss_pred             EcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcc--CCCeE
Q 028025           27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---IKLLQKAMEES--GNDKF  101 (215)
Q Consensus        27 ~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~  101 (215)
                      .|.+||||||+++.||+++++.+++-|++....          ....+..|..+.++..   .+.+...+.+.  .+..+
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~a----------Ni~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~   70 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPA----------NIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV   70 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHH----------HHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence            489999999999999999999999998865432          1233344455544322   23333333331  24445


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEE
Q 028025          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR  181 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (215)
                      |+-.......-+..+.. ..+. -.+|||+.+.+++.+|+..|  ..+.-...-+..++.....   |     .....++
T Consensus        71 vi~CSALKr~YRD~LR~-~~~~-~~Fv~L~g~~~~i~~Rm~~R--~gHFM~~~ll~SQfa~LE~---P-----~~de~vi  138 (161)
T COG3265          71 VIACSALKRSYRDLLRE-ANPG-LRFVYLDGDFDLILERMKAR--KGHFMPASLLDSQFATLEE---P-----GADEDVL  138 (161)
T ss_pred             EEecHHHHHHHHHHHhc-cCCC-eEEEEecCCHHHHHHHHHhc--ccCCCCHHHHHHHHHHhcC---C-----CCCCCEE
Confidence            55543333333333333 2223 34999999999999999999  6666667666666555332   1     1112589


Q ss_pred             EEcCCCCHHHHHHHHHHhhCC
Q 028025          182 KIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       182 ~id~~~~~~e~~~~i~~~l~~  202 (215)
                      .||.+.+++++++++...++.
T Consensus       139 ~idi~~~~e~vv~~~~~~l~~  159 (161)
T COG3265         139 TIDIDQPPEEVVAQALAWLKE  159 (161)
T ss_pred             EeeCCCCHHHHHHHHHHHHhc
Confidence            999999999999999988864

>PRK13976 thymidylate kinase; Provisional

Probab=99.64  E-value=6.6e-14  Score=102.48  Aligned_cols=166  Identities=17%  Similarity=0.149  Sum_probs=92.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC-----eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCC-HHH-----------
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP-SEV-----------   84 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------   84 (215)
                      ++|+|+|..||||||+++.|++.|.-     .++-.    ++  +.+...++.+.+.+....... ...           
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~----~e--P~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~   74 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT----RE--PGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH   74 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe----eC--CCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence            47999999999999999999998842     11110    00  112223333333332111111 110           


Q ss_pred             HHHHHHHHHHccCCCeEEEeCCCCC------------HHHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028025           85 TIKLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (215)
Q Consensus        85 ~~~~~~~~~~~~~~~~~iidg~~~~------------~~~~~~~~~~-~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~  151 (215)
                      +...+...+.  .|..||.|.|..+            .++...+... ..+.||+.|||++|++++.+|+.++  +....
T Consensus        75 ~~~~I~p~l~--~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~--~~e~~  150 (209)
T PRK13976         75 FVKVILPALL--QGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN--GYEFM  150 (209)
T ss_pred             HHHHHHHHHH--CCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc--chhcc
Confidence            1122333333  2889999986644            1233333321 2357999999999999999998654  22212


Q ss_pred             cHHHHHHHHHHHhhcchhHHHHHHh-cCcEEEEcC---CCC---HHHHHHHHHHhhCCCc
Q 028025          152 NVETIRKRFKVFLESSLPVVQYYEA-KGKVRKIDA---AKP---VAEVFDAVKAVFTPKD  204 (215)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~id~---~~~---~~e~~~~i~~~l~~~~  204 (215)
                      ..+.+.+-...|...       ... ....+++|+   +.+   ++++.++|.+.+....
T Consensus       151 ~~~~l~~v~~~Y~~l-------~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~  203 (209)
T PRK13976        151 DLEFYDKVRKGFREI-------VIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVT  203 (209)
T ss_pred             cHHHHHHHHHHHHHH-------HHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHH
Confidence            233322222223221       222 224677777   345   9999999988886554

>PRK12338 hypothetical protein; Provisional

Probab=99.64  E-value=3.4e-14  Score=108.94  Aligned_cols=181  Identities=15%  Similarity=0.197  Sum_probs=103.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcC--CCcHHH----HHHHHH---cCC-CCC------
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG--SENGTM----IQNMIK---EGK-IVP------   81 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~--~~~~~~----~~~~~~---~~~-~~~------   81 (215)
                      |.+|.+|+|+|+|||||||+|+.||+++|+.++..+|.++..+...  .+....    ....++   ... ..+      
T Consensus         1 m~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~   80 (319)
T PRK12338          1 MRKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELIC   80 (319)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHH
Confidence            3468899999999999999999999999999997789999876552  111001    111111   111 111      


Q ss_pred             ------HHHHHHHHHHHHHc--cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCC
Q 028025           82 ------SEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDD  151 (215)
Q Consensus        82 ------~~~~~~~~~~~~~~--~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~  151 (215)
                            ...+...+...+..  .++..+|+||.-........... ....+-.+++|..+++...+|...|  ...+.. 
T Consensus        81 ~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~-~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r~~-  158 (319)
T PRK12338         81 AGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQF-EENASIHFFILSADEEVHKERFVKRAMEIKRGG-  158 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhh-cccCceEEEEEECCHHHHHHHHHHhhhccCCch-
Confidence                  11222222222322  24889999996444333332111 1122334666678899999999998  222322 


Q ss_pred             cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                         ...+.+...+.....+.+. .....+.++++ .+.++.++.+.+.+.+...
T Consensus       159 ---~~l~~f~~Ir~Iq~~l~~~-A~e~~VpvI~N-~did~Tv~~ile~I~e~s~  207 (319)
T PRK12338        159 ---KQLEYFRENRIIHDHLVEQ-AREHNVPVIKN-DDIDCTVKKMLSYIREVCV  207 (319)
T ss_pred             ---hhhhChHHHHHHHHHHHHh-HhhCCCceeCC-CcHHHHHHHHHHHHHhheE
Confidence               2222222222222223333 22234556655 4899999999888876544

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.63  E-value=1.5e-14  Score=117.79  Aligned_cols=173  Identities=19%  Similarity=0.288  Sum_probs=100.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHH----HHcCCCc--HHHHHHHHHcCC--------------
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSEN--GTMIQNMIKEGK--------------   78 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~--------------   78 (215)
                      .++++|.|.|++||||||+++.|++++|+.+++.|+++|..    +..+...  ...+...+.+-.              
T Consensus       282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~  361 (512)
T PRK13477        282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVW  361 (512)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEE
Confidence            36789999999999999999999999999999999999985    2222211  122222221000              


Q ss_pred             ----CCCH-----------------HHHHHH---HHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCH
Q 028025           79 ----IVPS-----------------EVTIKL---LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (215)
Q Consensus        79 ----~~~~-----------------~~~~~~---~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~  134 (215)
                          .+..                 ..+.+.   .++.+..  ..++|+||.-  .-+      ...+..++.|||++++
T Consensus       362 ~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~--~~~iV~eGRD--igt------vV~P~AdlKIfL~As~  431 (512)
T PRK13477        362 INGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGE--KGGLVAEGRD--IGT------HVFPDAELKIFLTASV  431 (512)
T ss_pred             eCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhh--cCCEEEEccc--cee------EEcCCCCEEEEEECCH
Confidence                0000                 000111   1111221  4468888832  110      0345678999999999


Q ss_pred             HHHHHHHhhc--cCCCCCCcHHHHHHHHHH--HhhcchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025          135 EEMERRILNR--NQGREDDNVETIRKRFKV--FLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       135 e~~~~R~~~r--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~~  202 (215)
                      +++.+|+.++  .++......+.+.+.+..  +.+..+.....|... ..+++|+ +.+++++++.|...++.
T Consensus       432 evRa~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~-dai~IDTs~lsieeVv~~Il~~i~~  503 (512)
T PRK13477        432 EERARRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKAD-DAIELITDGLSIEEVVDKIIDLYRD  503 (512)
T ss_pred             HHHHHHHHhhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccC-CeEEEECCCCCHHHHHHHHHHHHHH
Confidence            9999986544  223222233444443322  112222222223322 3466665 77999999999998864

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.63  E-value=2.9e-14  Score=96.16  Aligned_cols=161  Identities=17%  Similarity=0.225  Sum_probs=102.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH-------HHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-------IKLLQKAM   93 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~   93 (215)
                      +.+|++.|++||||||+++.|++++++.+++.||+.....          .+.+..|..+.++..       ...+...+
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~N----------veKM~~GipLnD~DR~pWL~~i~~~~~~~l   81 (191)
T KOG3354|consen   12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPAN----------VEKMTQGIPLNDDDRWPWLKKIAVELRKAL   81 (191)
T ss_pred             ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHH----------HHHHhcCCCCCcccccHHHHHHHHHHHHHh
Confidence            4589999999999999999999999999999988754331          122233333332211       22222333


Q ss_pred             HccCCCeEEEeCCCCCHHHHHHHHHh-------cCCCC-cEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhh
Q 028025           94 EESGNDKFLIDGFPRNEENRAAFEAV-------TKIEP-EFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE  165 (215)
Q Consensus        94 ~~~~~~~~iidg~~~~~~~~~~~~~~-------~~~~~-~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~  165 (215)
                      .  +++++|+........-+..+...       ..+.. -.+|+|.++.|++..|+.+|  ..+.-..+-+..++.....
T Consensus        82 ~--~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R--~gHFMp~~lleSQf~~LE~  157 (191)
T KOG3354|consen   82 A--SGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKR--KGHFMPADLLESQFATLEA  157 (191)
T ss_pred             h--cCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhc--ccccCCHHHHHHHHHhccC
Confidence            2  48889987643322222222221       11112 24899999999999999999  5555566666666554332


Q ss_pred             cchhHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhCC
Q 028025          166 SSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTP  202 (215)
Q Consensus       166 ~~~~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~~  202 (215)
                      -   .    .+..+++.|+.. .+++++++.|.+.+..
T Consensus       158 p---~----~~e~div~isv~~~~~e~iv~tI~k~~~~  188 (191)
T KOG3354|consen  158 P---D----ADEEDIVTISVKTYSVEEIVDTIVKMVAL  188 (191)
T ss_pred             C---C----CCccceEEEeeccCCHHHHHHHHHHHHHh
Confidence            1   1    112257888774 8999999999887653

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.63  E-value=1.4e-14  Score=109.52  Aligned_cols=160  Identities=18%  Similarity=0.307  Sum_probs=93.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (215)
                      +|+|+|+|||||||+|+.|++.++     ..+++. |.++.....   +.......       ........+...+..  
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~---~~~~~e~~-------~~~~~~~~i~~~l~~--   67 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPV---WKEKYEEF-------IRDSTLYLIKTALKN--   67 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHH---hhHHhHHH-------HHHHHHHHHHHHHhC--
Confidence            589999999999999999999883     344544 445443211   00000011       112223455555543  


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025           98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (215)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (215)
                      +..+|+|+.......+..+...  ....+..+||+++|.+++.+|...|  +.. ...+.+.+.+..|..   +... +.
T Consensus        68 ~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R--~~~-~~~~~i~~l~~r~e~---p~~~-~~  140 (249)
T TIGR03574        68 KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER--GEK-IPNEVIKDMYEKFDE---PGTK-YS  140 (249)
T ss_pred             CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC--CCC-CCHHHHHHHHHhhCC---CCCC-CC
Confidence            5679999865443333333321  3345667999999999999999888  432 223334333333322   1111 11


Q ss_pred             hcCcEEEEcCCC--CHHHHHHHHHHhhCC
Q 028025          176 AKGKVRKIDAAK--PVAEVFDAVKAVFTP  202 (215)
Q Consensus       176 ~~~~~~~id~~~--~~~e~~~~i~~~l~~  202 (215)
                      .....+++|++.  +.+++++.|...+..
T Consensus       141 wd~~~~~vd~~~~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       141 WDLPDLTIDTTKKIDYNEILEEILEISEN  169 (249)
T ss_pred             ccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence            122467888754  778999999887654

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.61  E-value=8.7e-14  Score=99.62  Aligned_cols=160  Identities=13%  Similarity=0.115  Sum_probs=89.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC--eEeeHHHHHHHHHHcCCCcHHHHHHHHHcC--CCCC-------HHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSENGTMIQNMIKEG--KIVP-------SEVTIKLL   89 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~   89 (215)
                      ..+|+++|+|||||||+|+.|++.++.  .+++.|++...........   .......+  ...+       .......+
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~y~~~~~~~   78 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDA---EGGIEFDGDGGVSPGPEFRLLEGAWYEAV   78 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhccc---ccccccCccCCcccchHHHHHHHHHHHHH
Confidence            458999999999999999999999864  4456766544321111100   00000000  0011       11112233


Q ss_pred             HHHHHccCCCeEEEeCCCC-CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcch
Q 028025           90 QKAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSL  168 (215)
Q Consensus        90 ~~~~~~~~~~~~iidg~~~-~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~  168 (215)
                      ...+.  .|..+|+|.... .......+.. ....+...|++.||.+++.+|+.+|  +...  . .+....  + .   
T Consensus        79 ~~~l~--~G~~VIvD~~~~~~~~~r~~~~~-~~~~~~~~v~l~~~~~~l~~R~~~R--~~~~--~-~~~~~~--~-~---  144 (175)
T cd00227          79 AAMAR--AGANVIADDVFLGRAALQDCWRS-FVGLDVLWVGVRCPGEVAEGRETAR--GDRV--P-GQARKQ--A-R---  144 (175)
T ss_pred             HHHHh--CCCcEEEeeeccCCHHHHHHHHH-hcCCCEEEEEEECCHHHHHHHHHhc--CCcc--c-hHHHHH--H-H---
Confidence            33332  288999997443 3333344544 2233457999999999999999988  3221  1 111110  0 0   


Q ss_pred             hHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhh
Q 028025          169 PVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVF  200 (215)
Q Consensus       169 ~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l  200 (215)
                         ..+......+.+|++ .++++++++|...|
T Consensus       145 ---~~~~~~~~dl~iDts~~s~~e~a~~i~~~l  174 (175)
T cd00227         145 ---VVHAGVEYDLEVDTTHKTPIECARAIAARV  174 (175)
T ss_pred             ---HhcCCCcceEEEECCCCCHHHHHHHHHHhc
Confidence               001112234677775 58999999998776

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.61  E-value=2.9e-14  Score=102.65  Aligned_cols=168  Identities=20%  Similarity=0.239  Sum_probs=102.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc---C----CCcHHHHHHHHHcCCCCCHH--------
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---G----SENGTMIQNMIKEGKIVPSE--------   83 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~--------   83 (215)
                      .++++|+|+||+|||||||++.|.+.+.-.+++.....|.....   +    .-..+.+...+..+.++...        
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG   81 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG   81 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence            46789999999999999999999888743233333333322111   0    01224455555555543321        


Q ss_pred             HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028025           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVETIRKRFKV  162 (215)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~  162 (215)
                      ...+.++..+..  +..+|+|-   .......+.. ..+..-++||+.+ +.+++.+|+.+|    .....+.+.+|+..
T Consensus        82 t~~~~i~~~~~~--g~~~i~d~---~~~g~~~l~~-~~~~~~~~Ifi~pps~e~l~~RL~~R----~~~s~e~i~~Rl~~  151 (186)
T PRK14737         82 TPKAFIEDAFKE--GRSAIMDI---DVQGAKIIKE-KFPERIVTIFIEPPSEEEWEERLIHR----GTDSEESIEKRIEN  151 (186)
T ss_pred             CcHHHHHHHHHc--CCeEEEEc---CHHHHHHHHH-hCCCCeEEEEEECCCHHHHHHHHHhc----CCCCHHHHHHHHHH
Confidence            114445666544  88999984   3455555555 4333326888888 468899999977    33456778888876


Q ss_pred             HhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      ....    .. +...... +|+++ +++++.+++..++...
T Consensus       152 ~~~e----~~-~~~~~D~-vI~N~-dle~a~~ql~~ii~~~  185 (186)
T PRK14737        152 GIIE----LD-EANEFDY-KIIND-DLEDAIADLEAIICGK  185 (186)
T ss_pred             HHHH----Hh-hhccCCE-EEECc-CHHHHHHHHHHHHhcC
Confidence            4321    11 2222334 44444 8999999999888653

>TIGR00017 cmk cytidylate kinase

Probab=99.61  E-value=8.2e-14  Score=102.57  Aligned_cols=170  Identities=21%  Similarity=0.295  Sum_probs=96.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH----HcCCC--cHHHHHHHHHc-----------------C
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSE--NGTMIQNMIKE-----------------G   77 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~----~~~~~--~~~~~~~~~~~-----------------~   77 (215)
                      +++|.|.||+||||||+++.|++++++.+++.|++++...    ..+..  ....+......                 +
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   81 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNG   81 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence            5789999999999999999999999999999999987662    11211  11111111110                 0


Q ss_pred             CCCCH-----------------HHHHHHHHHHHHcc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHH
Q 028025           78 KIVPS-----------------EVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER  139 (215)
Q Consensus        78 ~~~~~-----------------~~~~~~~~~~~~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~  139 (215)
                      ..+..                 ..+...+.....+. ...++|+||...  .+  .    ..+..++.|||++|.++..+
T Consensus        82 ~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~~~~Vi~Gr~~--~~--~----v~~~a~~~ifl~a~~~~Ra~  153 (217)
T TIGR00017        82 EDVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKNDGIIADGRDI--GT--V----VFPNAEVKIFLDASVEERAK  153 (217)
T ss_pred             cchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCEEEEEcCc--ce--E----EeCCCCEEEEEECCHHHHHH
Confidence            00000                 00011222111111 245799998521  11  0    23346789999999999888


Q ss_pred             HHhhc-cCCCCCCcHHHHHHHHHHH--hhcchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHh
Q 028025          140 RILNR-NQGREDDNVETIRKRFKVF--LESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAV  199 (215)
Q Consensus       140 R~~~r-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~  199 (215)
                      |...+ .........+.+.+.+..-  .+..+.. ..+......+++|+ ..+++++++.|..+
T Consensus       154 Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~-~~~~~a~~~i~Idts~l~ieevv~~I~~~  216 (217)
T TIGR00017       154 RRYKQLQIKGNEVNFEELLAEIKERDDRDSNREV-APLKKADDALYLDTSNLSIDEVVEKILEY  216 (217)
T ss_pred             HHHHHHhccCCCCCHHHHHHHHHHHHhccccccc-CcccCCCCeEEEECCCCCHHHHHHHHHHh
Confidence            88766 1111133345555554322  1222222 22233334466666 77999999998764

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.61  E-value=1.1e-14  Score=104.61  Aligned_cols=128  Identities=20%  Similarity=0.243  Sum_probs=82.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC-----CCCH---------------
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-----IVPS---------------   82 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---------------   82 (215)
                      +|+|+|+|||||||+++.|++ +|+.++++|++.++.+..+......+...+....     .+..               
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~   79 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence            489999999999999999988 9999999999999987776655555544432211     1111               


Q ss_pred             ---HHHHHHHHHH----HHccC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028025           83 ---EVTIKLLQKA----MEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (215)
Q Consensus        83 ---~~~~~~~~~~----~~~~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~  154 (215)
                         .+....+...    +.... ...+++|+... .+  ..+.    ..+|.++++++|+++..+|+..|    .....+
T Consensus        80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~plL-~e--~~~~----~~~D~vv~V~a~~~~ri~Rl~~R----d~~s~~  148 (179)
T cd02022          80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDIPLL-FE--TGLE----KLVDRVIVVDAPPEIQIERLMKR----DGLSEE  148 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCEEEEEehHh-hc--CCcH----HhCCeEEEEECCHHHHHHHHHHc----CCCCHH
Confidence               1112222222    22222 25677775211 11  1111    24788999999999999999987    234567


Q ss_pred             HHHHHHHH
Q 028025          155 TIRKRFKV  162 (215)
Q Consensus       155 ~~~~~~~~  162 (215)
                      .+.+|+..
T Consensus       149 ~~~~r~~~  156 (179)
T cd02022         149 EAEARIAS  156 (179)
T ss_pred             HHHHHHHh
Confidence            77777665

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PLN02199 shikimate kinase

Probab=99.61  E-value=1.5e-13  Score=103.84  Aligned_cols=174  Identities=15%  Similarity=0.174  Sum_probs=102.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (215)
                      +...|+|+|.+||||||+++.|++.+|+.+++.|.++++... +....+.+.   ..|.....+.-.+.+.+....   .
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G~sI~eIf~---~~GE~~FR~~E~e~L~~L~~~---~  173 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-GTSVAEIFV---HHGENFFRGKETDALKKLSSR---Y  173 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-CCCHHHHHH---HhCHHHHHHHHHHHHHHHHhc---C
Confidence            356899999999999999999999999999999998888633 333332222   223333333334555554322   2


Q ss_pred             eEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCC---CcHHH---HHHHHHHHhhcchhHHH
Q 028025          100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGRED---DNVET---IRKRFKVFLESSLPVVQ  172 (215)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~  172 (215)
                      .+|+..-.........+..+.   -..+|||++|.+++.+|+... ...|+-   ...+.   ...++...++...++  
T Consensus       174 ~~VIStGGG~V~~~~n~~~L~---~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~pl--  248 (303)
T PLN02199        174 QVVVSTGGGAVIRPINWKYMH---KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEA--  248 (303)
T ss_pred             CEEEECCCcccCCHHHHHHHh---CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHH--
Confidence            333331111111112222211   246999999999999999852 112221   11211   124454445544455  


Q ss_pred             HHHhcCcEEEE------------cCCCCHHHHHHHHHHhhCCCcccc
Q 028025          173 YYEAKGKVRKI------------DAAKPVAEVFDAVKAVFTPKDEKV  207 (215)
Q Consensus       173 ~~~~~~~~~~i------------d~~~~~~e~~~~i~~~l~~~~~~~  207 (215)
                       |.. ..+.+.            .++.++++++.+|...+.....+.
T Consensus       249 -Y~~-Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~~  293 (303)
T PLN02199        249 -YTN-ANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKE  293 (303)
T ss_pred             -HHh-CCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhhc
Confidence             555 333333            246799999999988887666543

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.60  E-value=9.1e-14  Score=107.92  Aligned_cols=166  Identities=16%  Similarity=0.268  Sum_probs=94.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (215)
                      +.++..|+|+|+|||||||+++.|++.+|+.+++.|..+...  .+....+.+..   .+...........+...+... 
T Consensus       130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~--~G~~i~ei~~~---~G~~~fr~~e~~~l~~ll~~~-  203 (309)
T PRK08154        130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIERE--AGLSVSEIFAL---YGQEGYRRLERRALERLIAEH-  203 (309)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHH--hCCCHHHHHHH---HCHHHHHHHHHHHHHHHHhhC-
Confidence            456778999999999999999999999999999987765543  12222221111   122111223234444444322 


Q ss_pred             CCeEEEeCCC--CCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCC----CCcHHHHHHHHHHHhhcchhHH
Q 028025           98 NDKFLIDGFP--RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRE----DDNVETIRKRFKVFLESSLPVV  171 (215)
Q Consensus        98 ~~~~iidg~~--~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~  171 (215)
                      +..+|-.|..  ........+..     ..++|||.+|++++.+|+.+|...++    ....+.+.+.+.    ...++ 
T Consensus       204 ~~~VI~~Ggg~v~~~~~~~~l~~-----~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~----~R~~~-  273 (309)
T PRK08154        204 EEMVLATGGGIVSEPATFDLLLS-----HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILA----SREPL-  273 (309)
T ss_pred             CCEEEECCCchhCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHH----HHHHH-
Confidence            3334433321  11122222222     34699999999999999987721121    112233333222    22233 


Q ss_pred             HHHHhcCcEEEEcC-CCCHHHHHHHHHHhhCCC
Q 028025          172 QYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       172 ~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~~~  203 (215)
                        |.. .. +++|+ ..++++++++|...+...
T Consensus       274 --y~~-ad-~~I~t~~~s~ee~~~~I~~~l~~~  302 (309)
T PRK08154        274 --YAR-AD-AVVDTSGLTVAQSLARLRELVRPA  302 (309)
T ss_pred             --HHh-CC-EEEECCCCCHHHHHHHHHHHHHHH
Confidence              322 22 45555 559999999999888543

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=99.60  E-value=6.1e-14  Score=94.06  Aligned_cols=156  Identities=17%  Similarity=0.251  Sum_probs=95.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (215)
                      .+-|+|+|.||+||||+|..||+.+++.++..+++.++.-..     +...+-.+ -..+..+.+...++..+..   .+
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~-----~gyDE~y~-c~i~DEdkv~D~Le~~m~~---Gg   77 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLY-----EGYDEEYK-CHILDEDKVLDELEPLMIE---GG   77 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcch-----hccccccc-CccccHHHHHHHHHHHHhc---CC
Confidence            456999999999999999999999999999999998874111     11111111 1334455667778888764   67


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH--HHhhcchhHHHHHHhcC
Q 028025          101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK--VFLESSLPVVQYYEAKG  178 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  178 (215)
                      .|+|-+..     ..|..   .-+|+++.|.+|.+++..|+..|  +.+..   .+...++  .+.-......+.|+. .
T Consensus        78 ~IVDyHgC-----d~Fpe---rwfdlVvVLr~~~s~LY~RL~sR--gY~e~---Ki~eNiecEIfgv~~eea~eSy~~-~  143 (176)
T KOG3347|consen   78 NIVDYHGC-----DFFPE---RWFDLVVVLRTPNSVLYDRLKSR--GYSEK---KIKENIECEIFGVVLEEARESYSP-K  143 (176)
T ss_pred             cEEeeccc-----Cccch---hheeEEEEEecCchHHHHHHHHc--CCCHH---HHhhhcchHHHHHHHHHHHHHcCC-c
Confidence            88885432     22211   23578999999999999999998  53332   2222221  111111111222332 2


Q ss_pred             cEEEEcCCCCHHHHHHHHHHhh
Q 028025          179 KVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       179 ~~~~id~~~~~~e~~~~i~~~l  200 (215)
                      .+..+.++ +.++....|.+.+
T Consensus       144 iV~eL~s~-~~Eem~~ni~ri~  164 (176)
T KOG3347|consen  144 IVVELQSE-TKEEMESNISRIL  164 (176)
T ss_pred             ceeecCcC-CHHHHHHHHHHHH
Confidence            45555554 5577777765544

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.59  E-value=4.6e-14  Score=103.97  Aligned_cols=175  Identities=15%  Similarity=0.219  Sum_probs=92.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (215)
                      +.++.+|+|.|++||||||+++.|++.++   ..+++.|+++......  .........+........+.+.+.+.....
T Consensus         3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~   80 (209)
T PRK05480          3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHL--SFEERVKTNYDHPDAFDHDLLIEHLKALKA   80 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccC--CHHHhcccCccCcccccHHHHHHHHHHHHc
Confidence            35789999999999999999999999983   5667777765422100  000000000000011111112222211110


Q ss_pred             ----------------------ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025           95 ----------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (215)
Q Consensus        95 ----------------------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~  152 (215)
                                            ..+...+|+||......  ..    ....+|..|||++|.+++..|...|.....+..
T Consensus        81 ~~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~----~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~  154 (209)
T PRK05480         81 GKAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ER----LRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRS  154 (209)
T ss_pred             CCccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hh----HhhhhceeEEEeCChhHHHHHHHhhcchhcCCC
Confidence                                  11245788898643211  11    122467899999999999999888821111234


Q ss_pred             HHHHHHHHHHH-hhcchhHHHHHHhcCcEEEEcCCC----CHHHHHHHHHHhhC
Q 028025          153 VETIRKRFKVF-LESSLPVVQYYEAKGKVRKIDAAK----PVAEVFDAVKAVFT  201 (215)
Q Consensus       153 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~id~~~----~~~e~~~~i~~~l~  201 (215)
                      .+.+.+++... ..........+.... -++++++.    +.+++.++|..++.
T Consensus       155 ~e~~~~~~~~~~~~~~~~~i~~~~~~A-D~vI~~~~~~~~~~~~l~~~i~~~~~  207 (209)
T PRK05480        155 LESVINQYLSTVRPMHLQFIEPSKRYA-DIIIPEGGKNRVAIDILKAKIRQLLE  207 (209)
T ss_pred             HHHHHHHHHHhhhhhHHhhccHhhcce-eEEecCCCcchHHHHHHHHHHHHHhh
Confidence            45555544322 111111122222233 35565444    78888888877664

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.59  E-value=1e-14  Score=104.02  Aligned_cols=152  Identities=17%  Similarity=0.192  Sum_probs=89.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC-----CCCHHHH-----------
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-----IVPSEVT-----------   85 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----------   85 (215)
                      ++|+|+|..||||||+++.|++ +|+.++++|.+.+..+..+......+.+.+...-     .+....+           
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~   79 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL   79 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence            5899999999999999999977 9999999999998887766655445444332211     1111111           


Q ss_pred             -----------HHHHHHHHHccCC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028025           86 -----------IKLLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (215)
Q Consensus        86 -----------~~~~~~~~~~~~~-~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~  153 (215)
                                 ...+...+..... ..+++|.-. ..+.  .    ....+|.+|++.+|+++..+|+.+|    .+.+.
T Consensus        80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pL-L~E~--~----~~~~~D~vi~V~a~~e~ri~Rl~~R----~~~~~  148 (180)
T PF01121_consen   80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPL-LFES--G----LEKLCDEVIVVYAPEEIRIKRLMER----DGLSE  148 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TT-TTTT--T----GGGGSSEEEEEE--HHHHHHHHHHH----HTSTH
T ss_pred             HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcch-hhhh--h----HhhhhceEEEEECCHHHHHHHHHhh----CCCcH
Confidence                       2222232333223 677888522 1111  1    2234789999999999999999988    34556


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHH
Q 028025          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAE  191 (215)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e  191 (215)
                      +.+.+++..-..    ...... .. -++|+++++.+|
T Consensus       149 ~~~~~ri~~Q~~----~~~k~~-~a-d~vI~N~g~~~~  180 (180)
T PF01121_consen  149 EEAEARIASQMP----DEEKRK-RA-DFVIDNNGSLEE  180 (180)
T ss_dssp             HHHHHHHHTS------HHHHHH-H--SEEEE-SSHHH-
T ss_pred             HHHHHHHHhCCC----HHHHHH-hC-CEEEECCCCCCC
Confidence            677776554222    111112 22 267777777654

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.59  E-value=8.4e-14  Score=99.83  Aligned_cols=161  Identities=19%  Similarity=0.231  Sum_probs=86.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (215)
                      ..+|.+|+|+|+|||||||+++.|++.++     ..+++.+. ++..+.... ... ... ..      .......+...
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~-~r~~~~~~~-~~~-~~~-~~------~~~~~~~l~~~   73 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE-LREILGHYG-YDK-QSR-IE------MALKRAKLAKF   73 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH-HHhhcCCCC-CCH-HHH-HH------HHHHHHHHHHH
Confidence            35678999999999999999999999985     55665544 444322210 000 000 00      00112223333


Q ss_pred             HHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHhhcchhHH
Q 028025           93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESSLPVV  171 (215)
Q Consensus        93 ~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (215)
                      +.. .+..||+|+... ......... ....+.+.|||++|++++.+|..++ .+....   +.+    ........+. 
T Consensus        74 l~~-~g~~VI~~~~~~-~~~~~~~~~-~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~---~~~----~~~~~~~~~~-  142 (176)
T PRK05541         74 LAD-QGMIVIVTTISM-FDEIYAYNR-KHLPNYFEVYLKCDMEELIRRDQKGLYTKALK---GEI----KNVVGVDIPF-  142 (176)
T ss_pred             HHh-CCCEEEEEeCCc-HHHHHHHHH-hhcCCeEEEEEeCCHHHHHHhchhhHHHHHHc---Ccc----cccccCCCcc-
Confidence            332 377899997542 222222222 3344567999999999999997532 000000   011    1111111111 


Q ss_pred             HHHHhcCcEEEEcCC--CCHHHHHHHHHHhhCC
Q 028025          172 QYYEAKGKVRKIDAA--KPVAEVFDAVKAVFTP  202 (215)
Q Consensus       172 ~~~~~~~~~~~id~~--~~~~e~~~~i~~~l~~  202 (215)
                        |.... -+++|++  .++++++++|...+..
T Consensus       143 --~~~~A-d~vI~~~~~~~~~~~v~~i~~~l~~  172 (176)
T PRK05541        143 --DEPKA-DLVIDNSCRTSLDEKVDLILNKLKL  172 (176)
T ss_pred             --cCCCC-CEEEeCCCCCCHHHHHHHHHHHHHH
Confidence              22223 3455554  4899999888877743

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.59  E-value=3.7e-14  Score=98.64  Aligned_cols=144  Identities=15%  Similarity=0.186  Sum_probs=83.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEE
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (215)
                      +|.|.|+|||||||+|+.|++++++.+++.|.+..+....      .. ..... .......+...+.. +..  ...+|
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~------~~-~~~~~-~~~i~~~l~~~~~~-~~~--~~~~V   69 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK------LA-SEVAA-IPEVRKALDERQRE-LAK--KPGIV   69 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHH------HH-HHhcc-cHhHHHHHHHHHHH-Hhh--CCCEE
Confidence            5899999999999999999999999999987432221100      00 00000 00001111222222 221  45799


Q ss_pred             EeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHhhcc-hhHHHHHHhcCcE
Q 028025          103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESS-LPVVQYYEAKGKV  180 (215)
Q Consensus       103 idg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  180 (215)
                      +||......        ....++++|||++|++...+|+.+| ...+...+.+.+.+++..-.... .....+|.....-
T Consensus        70 idg~~~~~~--------~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d  141 (147)
T cd02020          70 LEGRDIGTV--------VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDA  141 (147)
T ss_pred             EEeeeeeeE--------EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCc
Confidence            998642111        1234789999999999999999986 22334556666666665443321 2223334334444


Q ss_pred             EEEcC
Q 028025          181 RKIDA  185 (215)
Q Consensus       181 ~~id~  185 (215)
                      +++|+
T Consensus       142 l~i~~  146 (147)
T cd02020         142 IVIDT  146 (147)
T ss_pred             EEEeC
Confidence            56654

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.58  E-value=5.1e-14  Score=102.45  Aligned_cols=116  Identities=22%  Similarity=0.357  Sum_probs=64.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH-------HHHHHHHHHc
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-------IKLLQKAMEE   95 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~   95 (215)
                      +|+|+|++||||||+++.|++++++.++....-      .....+..+...+.+.........       .+.+......
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~------~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~   74 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVE------PDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH   74 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCcccccccc------ccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence            489999999999999999999988754432110      000001111111111111111111       1112222111


Q ss_pred             -cCCCeEEEeCCCCCHH------------------HHHHHHH-h--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           96 -SGNDKFLIDGFPRNEE------------------NRAAFEA-V--TKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        96 -~~~~~~iidg~~~~~~------------------~~~~~~~-~--~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                       ..+..+|+|+++.+..                  ....+.. +  ....||++|||+++++++.+|+.+|
T Consensus        75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R  145 (193)
T cd01673          75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKR  145 (193)
T ss_pred             cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence             1378999998765311                  0111111 1  2467999999999999999999988

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.58  E-value=1.1e-13  Score=114.85  Aligned_cols=172  Identities=17%  Similarity=0.224  Sum_probs=101.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (215)
                      +.+...|+++|+|||||||+++.||+.+|+.+++.|+.+.+..  +....+.+.   ..|+..+.+.-.+.+.+....  
T Consensus         3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~--g~si~eif~---~~Ge~~FR~~E~~~l~~~~~~--   75 (542)
T PRK14021          3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI--GMSIPSYFE---EYGEPAFREVEADVVADMLED--   75 (542)
T ss_pred             CCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH--CcCHHHHHH---HHHHHHHHHHHHHHHHHHHhc--
Confidence            3456789999999999999999999999999999999877653  222222221   234433444445555554432  


Q ss_pred             CCeEE-EeC-CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025           98 NDKFL-IDG-FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (215)
Q Consensus        98 ~~~~i-idg-~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (215)
                      ...+| ..| .+...+....+.+ ....-..+|||+++++++.+|+..+ ..|+-... ...+++...+....++   |.
T Consensus        76 ~~~VIs~GGG~v~~~~n~~~L~~-~~~~~g~vv~L~~~~~~l~~Rl~~~-~~RPll~~-~~~~~~~~l~~~R~~~---Y~  149 (542)
T PRK14021         76 FDGIFSLGGGAPMTPSTQHALAS-YIAHGGRVVYLDADPKEAMERANRG-GGRPMLNG-DANKRWKKLFKQRDPV---FR  149 (542)
T ss_pred             CCeEEECCCchhCCHHHHHHHHH-HHhcCCEEEEEECCHHHHHHHHhCC-CCCCCCCC-CcHHHHHHHHHHHHHH---HH
Confidence            22233 233 2333333333322 1112236999999999999999754 12222111 1123333344433444   55


Q ss_pred             hcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          176 AKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       176 ~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      ....+.+..+..++++++++|...+..
T Consensus       150 ~~Ad~~i~~~~~~~~~~~~~i~~~~~~  176 (542)
T PRK14021        150 QVANVHVHTRGLTPQAAAKKLIDMVAE  176 (542)
T ss_pred             hhCCEEEECCCCCHHHHHHHHHHHHHh
Confidence            444444444467999999999888764

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.58  E-value=1.9e-13  Score=95.42  Aligned_cols=128  Identities=16%  Similarity=0.179  Sum_probs=76.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH----HcCCCcHHHHHHHHHcCCCCCHHHH---HHHHHHHHHc
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENGTMIQNMIKEGKIVPSEVT---IKLLQKAMEE   95 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~   95 (215)
                      +|+|.|+|||||||+|+.|++.++..+++.|++.....    ..+....+..          .....   .......+. 
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~-   69 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDED----------RWPWLQALTDALLAKLA-   69 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccc----------hhhHHHHHHHHHHHHHH-
Confidence            48999999999999999999999999999877654321    1111111000          00111   111111111 


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028025           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF  163 (215)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~  163 (215)
                      ..+..+|+|+..........+..+....+..+||+.+|.+++.+|+..|  .......+.+......+
T Consensus        70 ~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~  135 (150)
T cd02021          70 SAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAAR--KGHFMPADLLDSQFETL  135 (150)
T ss_pred             hCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhc--ccCCCCHHHHHHHHHHh
Confidence            1366788887555555555555411123456999999999999999988  32223344555544443

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.58  E-value=1.1e-13  Score=95.65  Aligned_cols=168  Identities=18%  Similarity=0.196  Sum_probs=100.1

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh---CC-eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHH
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF---GY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ   90 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~---~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (215)
                      .+.+.++.+|+++|.+||||||+|.+|.+++   |+ .++--||-+|.-+..+-.+...-...        +-.....+.
T Consensus        17 ~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~e--------niRRvaevA   88 (197)
T COG0529          17 ALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIE--------NIRRVAEVA   88 (197)
T ss_pred             HHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHH--------HHHHHHHHH
Confidence            3445678999999999999999999999998   33 33444577887766544443221110        001133344


Q ss_pred             HHHHccCCCeEEEeCCCCCH-HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchh
Q 028025           91 KAMEESGNDKFLIDGFPRNE-ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP  169 (215)
Q Consensus        91 ~~~~~~~~~~~iidg~~~~~-~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  169 (215)
                      +.+... |..+++. +...+ ..+....++......+-||++||.++|.+|--+.          -+.+........+..
T Consensus        89 kll~da-G~iviva-~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKG----------LYkKAr~GeI~~fTG  156 (197)
T COG0529          89 KLLADA-GLIVIVA-FISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKG----------LYKKARAGEIKNFTG  156 (197)
T ss_pred             HHHHHC-CeEEEEE-eeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchH----------HHHHHHcCCCCCCcC
Confidence            444432 4444443 33333 2333333322223457899999999999994332          222222222334444


Q ss_pred             HHHHHHhcC-cEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025          170 VVQYYEAKG-KVRKIDA-AKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       170 ~~~~~~~~~-~~~~id~-~~~~~e~~~~i~~~l~~  202 (215)
                      +...|+.+. +-+.+|+ ..++++.+++|..++..
T Consensus       157 id~pYE~P~~Pel~l~t~~~~vee~v~~i~~~l~~  191 (197)
T COG0529         157 IDSPYEAPENPELHLDTDRNSVEECVEQILDLLKE  191 (197)
T ss_pred             CCCCCCCCCCCeeEeccccCCHHHHHHHHHHHHHh
Confidence            445565543 6677776 68999999999988864

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.57  E-value=2.7e-14  Score=101.03  Aligned_cols=113  Identities=15%  Similarity=0.204  Sum_probs=66.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCc---HHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSEN---GTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (215)
                      ++|+++|+|||||||+|+.|++.+.   +.+++.+.-+...+.+...+   .+...+.+       .+....++..++. 
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~-------~ks~~rlldSalk-   73 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESF-------LKSVERLLDSALK-   73 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHH-------HHHHHHHHHHHhc-
Confidence            5799999999999999999999984   44443322122211111111   11111111       1122335555554 


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           96 SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                        +..||+|.....-..+..+...  ....+..+||+.+|.++|.+|...|
T Consensus        74 --n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~er  122 (261)
T COG4088          74 --NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRER  122 (261)
T ss_pred             --ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccC
Confidence              6789999744322222222211  5566777999999999999999776

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.57  E-value=8.5e-14  Score=97.42  Aligned_cols=164  Identities=16%  Similarity=0.222  Sum_probs=106.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc---C----CCcHHHHHHHHHcCCCCCHHHH-------
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---G----SENGTMIQNMIKEGKIVPSEVT-------   85 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~-------   85 (215)
                      ++.+++|+||+|+||||+++.|-+..+ ..++.....|...++   |    .-..+.+.+.+..+.++.....       
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT   81 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT   81 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence            688999999999999999999988884 445554555543222   1    1233667777777666542211       


Q ss_pred             -HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecC-HHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028025           86 -IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFKVF  163 (215)
Q Consensus        86 -~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~-~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~  163 (215)
                       ...++..+..  |..+++|   ........... ..+ ....||+.+| .+++.+|+..|    ..++.+.+.+|+...
T Consensus        82 ~~~~ve~~~~~--G~~vild---Id~qGa~qvk~-~~p-~~v~IFi~pPs~eeL~~RL~~R----gtds~e~I~~Rl~~a  150 (191)
T COG0194          82 SREPVEQALAE--GKDVILD---IDVQGALQVKK-KMP-NAVSIFILPPSLEELERRLKGR----GTDSEEVIARRLENA  150 (191)
T ss_pred             cHHHHHHHHhc--CCeEEEE---EehHHHHHHHH-hCC-CeEEEEEcCCCHHHHHHHHHcc----CCCCHHHHHHHHHHH
Confidence             4455555554  7888888   22333444444 444 4456777764 57799999866    667889999999887


Q ss_pred             hhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      .....    .+... ..+++|.  +++..++.+...+..
T Consensus       151 ~~Ei~----~~~~f-dyvivNd--d~e~a~~~l~~ii~a  182 (191)
T COG0194         151 KKEIS----HADEF-DYVIVND--DLEKALEELKSIILA  182 (191)
T ss_pred             HHHHH----HHHhC-CEEEECc--cHHHHHHHHHHHHHH
Confidence            76533    23333 3455554  678888888777653

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=99.57  E-value=3.8e-13  Score=94.75  Aligned_cols=164  Identities=16%  Similarity=0.255  Sum_probs=106.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCC-----HH-------------
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP-----SE-------------   83 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-------------   83 (215)
                      .+|.++|..||||||+++.+ +.+|+++++.|.+-|+.+..+.+....+.+.+...-..+     .+             
T Consensus         2 ~iVGLTGgiatGKStVs~~f-~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r   80 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVF-KALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR   80 (225)
T ss_pred             eEEEeecccccChHHHHHHH-HHcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence            57999999999999999999 589999999999999999987766655555443321111     00             


Q ss_pred             ----------HHHHHHHHHHH--ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028025           84 ----------VTIKLLQKAME--ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (215)
Q Consensus        84 ----------~~~~~~~~~~~--~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~  151 (215)
                                +..+++.+-..  ..+...+++| .|..++.  .+.+    .+...|.+.||.++..+|+..|    .+.
T Consensus        81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~--~~~~----~~~~tvvV~cd~~~Ql~Rl~~R----d~l  149 (225)
T KOG3220|consen   81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA--KLLK----ICHKTVVVTCDEELQLERLVER----DEL  149 (225)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH--hHHh----heeeEEEEEECcHHHHHHHHHh----ccc
Confidence                      00111111111  1125566666 3322332  2232    2345899999999999999988    356


Q ss_pred             cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      +.++.++|+..-..    +.+..+..  .+++|++.+++++.++|...+...
T Consensus       150 se~dAe~Rl~sQmp----~~~k~~~a--~~Vi~Nng~~~~l~~qv~~v~~~~  195 (225)
T KOG3220|consen  150 SEEDAENRLQSQMP----LEKKCELA--DVVIDNNGSLEDLYEQVEKVLALL  195 (225)
T ss_pred             cHHHHHHHHHhcCC----HHHHHHhh--heeecCCCChHHHHHHHHHHHHHh
Confidence            67777788766443    22222222  478888899999999988766543

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.57  E-value=1.7e-13  Score=95.15  Aligned_cols=176  Identities=20%  Similarity=0.338  Sum_probs=117.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH-----------H
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------I   86 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~   86 (215)
                      +.+..+|++.|.-+|||||.+..|.+.+.- ...... ...........+..+..++.+....++...           .
T Consensus         2 ~~rg~liV~eGlDrsgKstQ~~~l~~~l~~-~~~~~~-l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~   79 (208)
T KOG3327|consen    2 MIRGALIVLEGLDRSGKSTQCGKLVESLIP-GLDPAE-LLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHV   79 (208)
T ss_pred             CCCccEEeeeccccCCceeehhHHHHHHHh-ccChHH-hhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHH
Confidence            356789999999999999999999998842 222212 222334456677777788777666665543           3


Q ss_pred             HHHHHHHHccCCCeEEEeCCCCC-----------HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHH
Q 028025           87 KLLQKAMEESGNDKFLIDGFPRN-----------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET  155 (215)
Q Consensus        87 ~~~~~~~~~~~~~~~iidg~~~~-----------~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~  155 (215)
                      +.+.+.+..  +-.+|+|.|..+           .+|+..+.. ..++||+++||+++++.+.+| ..+  |........
T Consensus        80 ~~i~e~l~k--g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~-gL~KPDlvlfL~v~p~~~a~r-ggf--G~Erye~v~  153 (208)
T KOG3327|consen   80 SLIKEKLAK--GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDV-GLPKPDLVLFLDVSPEDAARR-GGF--GEERYETVA  153 (208)
T ss_pred             HHHHHHHhc--CCeEEEecceecchhhhhhcCCCcchhhCCcc-CCCCCCeEEEEeCCHHHHHHh-cCc--chhHHHHHH
Confidence            455555544  778999987654           466666666 788999999999999995544 333  222222233


Q ss_pred             HHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025          156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK  206 (215)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~  206 (215)
                      +.++...+++...     -.+..+..++|++.+++++.+.|..++++....
T Consensus       154 fqekv~~~~q~l~-----r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~~  199 (208)
T KOG3327|consen  154 FQEKVLVFFQKLL-----RKEDLNWHVVDASKSVEKVHQQVRSLVENVLSE  199 (208)
T ss_pred             HHHHHHHHHHHHH-----hccCCCeEEEecCccHHHHHHHHHHHHHHhccC
Confidence            3344333332211     013446889999999999999998888766554

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.56  E-value=6.2e-14  Score=102.84  Aligned_cols=170  Identities=18%  Similarity=0.224  Sum_probs=98.8

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc---CC----CcHHHHHHHHHcCCCCCHH------
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GS----ENGTMIQNMIKEGKIVPSE------   83 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~------   83 (215)
                      .+.++.+|+|+||+||||||+++.|.+......+......+.....   +.    -..+.+......+.++...      
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~   88 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY   88 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence            3557889999999999999999999764311111110111110000   00    0123344444444433211      


Q ss_pred             --HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec--CHHHHHHHHhhccCCCCCCcHHHHHHH
Q 028025           84 --VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC--SEEEMERRILNRNQGREDDNVETIRKR  159 (215)
Q Consensus        84 --~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~--~~e~~~~R~~~r~~~~~~~~~~~~~~~  159 (215)
                        .....+...+..  +..+|+|..   ...+..+.+ .  .|+.++++.+  +.+++.+|+.+|  +  .+..+.+.+|
T Consensus        89 YGt~~~~i~~~~~~--g~~vi~~~~---~~g~~~l~~-~--~pd~~~if~~pps~e~l~~Rl~~R--~--~~~~~~~~~R  156 (206)
T PRK14738         89 YGVPKAPVRQALAS--GRDVIVKVD---VQGAASIKR-L--VPEAVFIFLAPPSMDELTRRLELR--R--TESPEELERR  156 (206)
T ss_pred             ecCCHHHHHHHHHc--CCcEEEEcC---HHHHHHHHH-h--CCCeEEEEEeCCCHHHHHHHHHHc--C--CCCHHHHHHH
Confidence              012345555543  777888853   344444544 3  3566555554  466889999987  3  3456788888


Q ss_pred             HHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          160 FKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      +..+......     .....++++|++.++++++++|...+.+.
T Consensus       157 l~~~~~e~~~-----~~~~~~~iId~~~~~e~v~~~i~~~l~~~  195 (206)
T PRK14738        157 LATAPLELEQ-----LPEFDYVVVNPEDRLDEAVAQIMAIISAE  195 (206)
T ss_pred             HHHHHHHHhc-----ccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            8766543221     11225788999889999999999999754

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.56  E-value=4e-13  Score=94.17  Aligned_cols=109  Identities=20%  Similarity=0.309  Sum_probs=63.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEEE
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI  103 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii  103 (215)
                      |+|+|+|||||||+++.|++.+++.+++.|+++......  ...+.+...   +...........+.. +... +..++.
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~~---~~~~~~~~e~~~~~~-~~~~-~~~vi~   74 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAEE---GEEGFRELEREVLLL-LLTK-ENAVIA   74 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHHH---CHHHHHHHHHHHHHH-Hhcc-CCcEEE
Confidence            789999999999999999999999999998887665321  222222111   111001111122222 2221 333333


Q ss_pred             eC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025          104 DG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus       104 dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      .|  +.........+     .....+|||++|++++.+|+..|
T Consensus        75 ~g~~~i~~~~~~~~~-----~~~~~~i~l~~~~e~~~~R~~~r  112 (154)
T cd00464          75 TGGGAVLREENRRLL-----LENGIVVWLDASPEELLERLARD  112 (154)
T ss_pred             CCCCccCcHHHHHHH-----HcCCeEEEEeCCHHHHHHHhccC
Confidence            33  21222211111     23457999999999999999887

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.55  E-value=5.1e-13  Score=96.03  Aligned_cols=162  Identities=17%  Similarity=0.223  Sum_probs=91.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCe---EeeHHHHHHHHHHcCCC----cHHHHHHHHHcCCCCC--------HHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYT---HLSAGDLLRAEIKSGSE----NGTMIQNMIKEGKIVP--------SEVTI   86 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~---~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~   86 (215)
                      .+|+|+|+|||||||+++.|+..++..   .+....+.+.....+..    ..+.+......+.+..        .-. .
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~   80 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI-P   80 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC-h
Confidence            479999999999999999999987531   11110111111001111    1112222222221100        000 1


Q ss_pred             HHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhc
Q 028025           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES  166 (215)
Q Consensus        87 ~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~  166 (215)
                      ..+...+.  .+..++++|..   .....+.. ... ...+|||+++.+++.+|+..|  +++  ..+.+.+++......
T Consensus        81 ~~i~~~~~--~g~~vv~~g~~---~~~~~~~~-~~~-~~~~i~l~~~~~~~~~Rl~~R--~~~--~~~~~~~rl~~~~~~  149 (179)
T TIGR02322        81 AEIDQWLE--AGDVVVVNGSR---AVLPEARQ-RYP-NLLVVNITASPDVLAQRLAAR--GRE--SREEIEERLARSARF  149 (179)
T ss_pred             HHHHHHHh--cCCEEEEECCH---HHHHHHHH-HCC-CcEEEEEECCHHHHHHHHHHc--CCC--CHHHHHHHHHHHhhc
Confidence            12333333  26789999752   22233333 223 346999999999999999988  443  346677776543221


Q ss_pred             chhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          167 SLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       167 ~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      .      . ....+++++++.++++++++|..++..
T Consensus       150 ~------~-~~~~~~vi~~~~~~ee~~~~i~~~l~~  178 (179)
T TIGR02322       150 A------A-APADVTTIDNSGSLEVAGETLLRLLRK  178 (179)
T ss_pred             c------c-ccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence            0      0 223466688888999999999988853

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=99.55  E-value=4.9e-13  Score=98.59  Aligned_cols=173  Identities=16%  Similarity=0.291  Sum_probs=98.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee---HHHHHHHHH--------Hc--CCCcHHHHHHHHHcC-CCCCH---
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS---AGDLLRAEI--------KS--GSENGTMIQNMIKEG-KIVPS---   82 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~---~~~~~~~~~--------~~--~~~~~~~~~~~~~~~-~~~~~---   82 (215)
                      +-++|++.|+.|||||++|+.||+++|+.++.   .|+++-...        ..  +......+..+..+. .....   
T Consensus        70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q  149 (393)
T KOG3877|consen   70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQ  149 (393)
T ss_pred             cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHH
Confidence            46799999999999999999999999987775   333322111        00  000001111111111 01111   


Q ss_pred             --------HHHHHHHHHHHHccCCCeEEEeCCCCCH-HH-----------------HHHHHHh---cCCCCcEEEEEecC
Q 028025           83 --------EVTIKLLQKAMEESGNDKFLIDGFPRNE-EN-----------------RAAFEAV---TKIEPEFVLFFDCS  133 (215)
Q Consensus        83 --------~~~~~~~~~~~~~~~~~~~iidg~~~~~-~~-----------------~~~~~~~---~~~~~~~~i~L~~~  133 (215)
                              .....++++.+.-  |++|+++..|.+- -+                 ...+.+.   ....|.++|||+.|
T Consensus       150 ~r~y~~R~~QY~dAL~HiL~T--GQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~P  227 (393)
T KOG3877|consen  150 DRIYNCRFDQYLDALAHILNT--GQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTP  227 (393)
T ss_pred             HHHHHhHHHHHHHHHHHHHhc--CCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCC
Confidence                    1123445555433  9999999887651 11                 1111111   33579999999999


Q ss_pred             HHHHHHHHhhccCCCCCCc---HHHHHHHHHH-HhhcchhHHHHHHhcCcEEEEcC--CCCHHHHHHHHHHh
Q 028025          134 EEEMERRILNRNQGREDDN---VETIRKRFKV-FLESSLPVVQYYEAKGKVRKIDA--AKPVAEVFDAVKAV  199 (215)
Q Consensus       134 ~e~~~~R~~~r~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~id~--~~~~~e~~~~i~~~  199 (215)
                      .+.+.+++++|  +...+.   .+...+-++. |.+.   .+..++....++..|.  .++.+.+++.|..+
T Consensus       228 v~~v~~~Ik~r--g~~~Eik~~s~aYL~diE~~YK~~---fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIErl  294 (393)
T KOG3877|consen  228 VNKVLENIKRR--GNTDEIKTVSEAYLKDIEESYKDS---FLREYSNHSEILAYDWTKPGDTDAVVEDIERL  294 (393)
T ss_pred             cHHHHHHHHhc--CCCcceeehhHHHHHHHHHHHHHH---HHHHHhhhhheeeeecccCCCchhHHHhhhhh
Confidence            99999999998  444332   2222222221 2221   2334555556777765  45677788888654

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.54  E-value=2.4e-13  Score=97.12  Aligned_cols=164  Identities=15%  Similarity=0.191  Sum_probs=97.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH----HcCCCcHHHHHHHHHcCCCCC-HHHHHHHHHHHHHc
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENGTMIQNMIKEGKIVP-SEVTIKLLQKAMEE   95 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   95 (215)
                      +.+++|.|++||||||+++.|+..++..+++.+++.....    ..+....+        ....+ ...+....... ..
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~--------~~~~~~~~~~~~~~~~~-~~   73 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTD--------EDRLPWLERLNDASYSL-YK   73 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCc--------ccchHHHHHHHHHHHHH-Hh
Confidence            3579999999999999999999999988887766432110    00111100        01111 11112222222 12


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (215)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (215)
                      ....++|+..+. ....+..+.  ....+..+|||++|++++.+|+.+|  ..+....+.+..++..+...       -.
T Consensus        74 ~~~~g~iv~s~~-~~~~R~~~r--~~~~~~~~v~l~a~~~~l~~Rl~~R--~~~~~~~~vl~~Q~~~~e~~-------~~  141 (176)
T PRK09825         74 KNETGFIVCSSL-KKQYRDILR--KSSPNVHFLWLDGDYETILARMQRR--AGHFMPPDLLQSQFDALERP-------CA  141 (176)
T ss_pred             cCCCEEEEEEec-CHHHHHHHH--hhCCCEEEEEEeCCHHHHHHHHhcc--cCCCCCHHHHHHHHHHcCCC-------CC
Confidence            124566664443 333333333  3344567999999999999999999  33334455555444433311       01


Q ss_pred             hcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025          176 AKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       176 ~~~~~~~id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                      ....++.+|++.+++++.+.+...+..++.
T Consensus       142 ~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~  171 (176)
T PRK09825        142 DEHDIARIDVNHDIENVTEQCRQAVQAFRQ  171 (176)
T ss_pred             CcCCeEEEECCCCHHHHHHHHHHHHHHHHh
Confidence            123589999999999999888888876544

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.54  E-value=2.7e-13  Score=108.42  Aligned_cols=166  Identities=19%  Similarity=0.229  Sum_probs=99.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC-----CCCCHHH------------
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEV------------   84 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------------   84 (215)
                      ..|+|+|.+||||||+++.|++ +|+.++++|.+.++.+..+......+.+.+...     ..+....            
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~   80 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR   80 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            4699999999999999999987 899999999999988776654333333322111     1111110            


Q ss_pred             ----------HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028025           85 ----------TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (215)
Q Consensus        85 ----------~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~  154 (215)
                                +...+.+.+...++..+++.+.|...+.  .    ....+|.+||+++|.++..+|+..| ++   ...+
T Consensus        81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~--~----~~~~~D~iI~V~ap~e~ri~Rl~~r-Rg---~s~~  150 (395)
T PRK03333         81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES--G----MAPLFHLVVVVDADVEVRVRRLVEQ-RG---MAEA  150 (395)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC--C----chhhCCEEEEEECCHHHHHHHHHhc-CC---CCHH
Confidence                      1122222232333445555554422221  1    1234689999999999999999874 12   2334


Q ss_pred             HHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (215)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~  204 (215)
                      ....++.....     .+...... -++++++.+++++..++..+++...
T Consensus       151 ~a~~ri~~Q~~-----~e~k~~~A-D~vIdN~~s~e~l~~~v~~~l~~~~  194 (395)
T PRK03333        151 DARARIAAQAS-----DEQRRAVA-DVWLDNSGTPDELVEAVRALWADRL  194 (395)
T ss_pred             HHHHHHHhcCC-----hHHHHHhC-CEEEECCCCHHHHHHHHHHHHHHHH
Confidence            44444433211     11112222 3667788899999999887775443

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.54  E-value=4.6e-13  Score=94.24  Aligned_cols=155  Identities=20%  Similarity=0.328  Sum_probs=85.1

Q ss_pred             CCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEEEeC-CCC
Q 028025           30 PGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDG-FPR  108 (215)
Q Consensus        30 ~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iidg-~~~  108 (215)
                      |||||||+++.||+.+++.+++.|+++....  +....+.+..   .|.........+++...+... +.++..-| ...
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~--g~si~~i~~~---~G~~~fr~~E~~~l~~l~~~~-~~VIa~GGG~~~   74 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT--GMSISEIFAE---EGEEAFRELESEALRELLKEN-NCVIACGGGIVL   74 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH--TSHHHHHHHH---HHHHHHHHHHHHHHHHHHCSS-SEEEEE-TTGGG
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHh--CCcHHHHHHc---CChHHHHHHHHHHHHHHhccC-cEEEeCCCCCcC
Confidence            7999999999999999999999999887652  2222222221   122222233345555554432 22333323 434


Q ss_pred             CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCC
Q 028025          109 NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAK  187 (215)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~  187 (215)
                      ..+....+..     ...+|||+.+++.+.+|+..+ .++....... .......+. ..   ...|..... ++++.+.
T Consensus        75 ~~~~~~~L~~-----~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~-~~~~~~~~~-~R---~~~Y~~~a~-~~v~~~~  143 (158)
T PF01202_consen   75 KEENRELLKE-----NGLVIYLDADPEELAERLRARDNRPLLKGKME-HEEILELLF-ER---EPLYEQAAD-IVVDTDG  143 (158)
T ss_dssp             SHHHHHHHHH-----HSEEEEEE--HHHHHHHHHHHCTSGGTCSHHH-HHHHHHHHH-HH---HHHHHHHSS-EEEETSS
T ss_pred             cHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCh-HHHHHHHHH-HH---HHHHHhcCe-EEEeCCC
Confidence            4444444443     346999999999999999877 2121222221 011111122 22   233444443 4555544


Q ss_pred             C-HHHHHHHHHHhhC
Q 028025          188 P-VAEVFDAVKAVFT  201 (215)
Q Consensus       188 ~-~~e~~~~i~~~l~  201 (215)
                      . +++++++|.+.|+
T Consensus       144 ~~~~~i~~~i~~~l~  158 (158)
T PF01202_consen  144 SPPEEIAEEILEFLK  158 (158)
T ss_dssp             CHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHhC
Confidence            4 4999999998774

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.54  E-value=6.4e-13  Score=98.58  Aligned_cols=172  Identities=22%  Similarity=0.288  Sum_probs=96.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHH----cCCCcH--HHHHHHHHcCC----------------
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSENG--TMIQNMIKEGK----------------   78 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~----------------   78 (215)
                      +++|.|.|++||||||+++.|++++|+.+++.|+++|....    .+....  ....+....-.                
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNG   83 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECC
Confidence            57999999999999999999999999999999999887433    232221  12222111100                


Q ss_pred             -CCCHH-------------HHHHHHHHHHHc-----cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHH
Q 028025           79 -IVPSE-------------VTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER  139 (215)
Q Consensus        79 -~~~~~-------------~~~~~~~~~~~~-----~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~  139 (215)
                       .+...             .....+++.+..     ....++|++|..    ....    .....++.|||.+|.+...+
T Consensus        84 ~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~----~~~~----vl~~a~~~ifl~a~~e~R~~  155 (225)
T PRK00023         84 EDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRD----IGTV----VFPDAELKIFLTASAEERAE  155 (225)
T ss_pred             cchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecC----hheE----EeCCCCEEEEEECCHHHHHH
Confidence             00000             000112221111     124578999842    0111    33446789999999998777


Q ss_pred             HHhhc--cCCCCCCcHHHHHHHHHHHhh--cchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025          140 RILNR--NQGREDDNVETIRKRFKVFLE--SSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       140 R~~~r--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~~  202 (215)
                      |...+  ..+ ...+.+.+.+.+.....  ..+. ...+...+..+++|+ ..+++++++.|..+++.
T Consensus       156 Rr~~~~~~~g-~~~~~~~~~~~i~~rD~~~~~r~-~~~l~~~~d~l~IDTs~l~~ee~v~~I~~~i~~  221 (225)
T PRK00023        156 RRYKELQAKG-ISVDFEDLLAEIKERDERDSNRA-VAPLKPAEDALLLDTSGLSIEEVVEKILALVEE  221 (225)
T ss_pred             HHHHHHHhcC-CCCCHHHHHHHHHHHHHhhhhcc-cccccccCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence            65544  112 12334444444332211  1111 111112233477776 56999999999998853

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=99.53  E-value=7.4e-13  Score=112.62  Aligned_cols=171  Identities=19%  Similarity=0.263  Sum_probs=100.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH----HcCCCcH--HHHHHHHHcCC-------------CC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENG--TMIQNMIKEGK-------------IV   80 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~-------------~~   80 (215)
                      ..++|.|.||+||||||+++.|++++++.+++.|.++|...    ..+....  ..+......-.             .+
T Consensus       441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (661)
T PRK11860        441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDV  520 (661)
T ss_pred             CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEc
Confidence            35689999999999999999999999999999999999873    2232221  12222111100             00


Q ss_pred             CHH-----------------HHHHHH---HHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHH
Q 028025           81 PSE-----------------VTIKLL---QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR  140 (215)
Q Consensus        81 ~~~-----------------~~~~~~---~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R  140 (215)
                      ..+                 .+.+.+   ++.+..  ..++|+||.-  .-+      ...+..++.|||++++++..+|
T Consensus       521 ~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~--~~~~v~eGRd--igt------vv~p~a~~kifl~a~~~~Ra~R  590 (661)
T PRK11860        521 TDAIRTEAAGMGASRVSALPAVRAALLALQRSFRR--LPGLVADGRD--MGT------VIFPDAALKVFLTASAEARAER  590 (661)
T ss_pred             hhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhh--CCCEEEECCC--Ccc------EECCCCCeEEEEECChhHHHHH
Confidence            000                 001111   111221  4578999842  111      0456788999999999998777


Q ss_pred             Hhhc--cCCCCCCcHHHHHHHHH--HHhhcchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025          141 ILNR--NQGREDDNVETIRKRFK--VFLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       141 ~~~r--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~~  202 (215)
                      ..+.  ..+. ..+.+.+.+.+.  ++.+..+.. ..+......++||+ ..+++|+++.|..+++.
T Consensus       591 r~~~~~~~~~-~~~~~~~~~~~~~Rd~~d~~R~~-~pl~~~~da~~idts~~~~~~v~~~i~~~i~~  655 (661)
T PRK11860        591 RYKQLISKGI-SANIADLLADLEARDARDTQRSV-APLKPAQDALLLDNSDLTIEQAVAQVLDWWQE  655 (661)
T ss_pred             HHHHHHhCCC-CCCHHHHHHHHHHHhHHhhcCCC-CCCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence            7653  2232 223333333221  222222221 12233345677777 66999999999999863

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.53  E-value=1.3e-13  Score=99.51  Aligned_cols=146  Identities=18%  Similarity=0.313  Sum_probs=83.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC---eEeeHHHHHHHHHHcCC----------C---cHHHHH---HHHHcCCC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGS----------E---NGTMIQ---NMIKEGKI   79 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~---~~i~~~~~~~~~~~~~~----------~---~~~~~~---~~~~~~~~   79 (215)
                      .++.+|.|.|++||||||+|+.|++.|+.   ..++.|+++...-....          +   ..+.+.   ..+..|+.
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~   85 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP   85 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence            45689999999999999999999999984   47888887764311100          0   001111   11222322


Q ss_pred             CCHHHHHHHHH-----HHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc---cCCCCCC
Q 028025           80 VPSEVTIKLLQ-----KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR---NQGREDD  151 (215)
Q Consensus        80 ~~~~~~~~~~~-----~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r---~~~~~~~  151 (215)
                      +.... .+...     +.....+..++|++|+..-.+  ..+.    ...|+.||++++.+++..|...|   .+|+.  
T Consensus        86 v~~P~-yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr----~~~d~kIfvdtd~D~RliRri~RD~~~rg~~--  156 (218)
T COG0572          86 VDLPV-YDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLR----DLMDLKIFVDTDADVRLIRRIKRDVQERGRD--  156 (218)
T ss_pred             ccccc-cchhcccccCCccccCCCcEEEEeccccccc--HHHH----hhcCEEEEEeCCccHHHHHHHHHHHHHhCCC--
Confidence            21111 01110     111122378999999653333  1222    23678999999999988887777   33432  


Q ss_pred             cHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025          152 NVETIRKRFKVFLESSLPVVQYYEAK  177 (215)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (215)
                       .   ...+..|....+|....|-.+
T Consensus       157 -~---e~vi~qy~~~vkp~~~~fIep  178 (218)
T COG0572         157 -L---ESVIEQYVKTVRPMYEQFIEP  178 (218)
T ss_pred             -H---HHHHHHHHHhhChhhhhccCc
Confidence             2   334444655666665555443

>PRK07261 topology modulation protein; Provisional

Probab=99.52  E-value=7.4e-14  Score=99.41  Aligned_cols=99  Identities=18%  Similarity=0.241  Sum_probs=70.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      +.|+|.|+|||||||+|+.|++.+++.+++.|.+....     .+           ...+.+.....+...+.+   ..+
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~---~~w   61 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP-----NW-----------QERDDDDMIADISNFLLK---HDW   61 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc-----cc-----------ccCCHHHHHHHHHHHHhC---CCE
Confidence            46999999999999999999999999999887653211     00           122333445555555543   349


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      |+||.+........+.     .+|.+|+|++|...+..|+.+|
T Consensus        62 Iidg~~~~~~~~~~l~-----~ad~vI~Ld~p~~~~~~R~lkR   99 (171)
T PRK07261         62 IIDGNYSWCLYEERMQ-----EADQIIFLNFSRFNCLYRAFKR   99 (171)
T ss_pred             EEcCcchhhhHHHHHH-----HCCEEEEEcCCHHHHHHHHHHH
Confidence            9999864322222333     4788999999999999999888

>smart00072 GuKc Guanylate kinase homologues

Probab=99.52  E-value=1.5e-13  Score=99.19  Aligned_cols=163  Identities=20%  Similarity=0.365  Sum_probs=100.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC--CeEeeHHHHHHHHHHc---CCC----cHHHHHHHHHcCCCCCHH--------
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSE--------   83 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~--------   83 (215)
                      +..|+|.||+||||+|+++.|.+.+.  +..+.. ...|.....   +..    ..+.+......+.+++..        
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~-~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YG   80 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVS-HTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYG   80 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeee-ecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcc
Confidence            46799999999999999999999863  322211 222221111   111    225666666666654422        


Q ss_pred             HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe-cCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028025           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNRNQGREDDNVETIRKRFKV  162 (215)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~-~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~  162 (215)
                      ...+.+...+..  +..+|+|..+.   ....+.. ....| ++||+. .+.+++.+|+.+|    ..+..+.+.+|+..
T Consensus        81 t~~~~i~~~~~~--~~~~ild~~~~---~~~~l~~-~~~~~-~vIfi~~~s~~~l~~rl~~R----~~~~~~~i~~rl~~  149 (184)
T smart00072       81 TSKETIRQVAEQ--GKHCLLDIDPQ---GVKQLRK-AQLYP-IVIFIAPPSSEELERRLRGR----GTETAERIQKRLAA  149 (184)
T ss_pred             cCHHHHHHHHHc--CCeEEEEECHH---HHHHHHH-hCCCc-EEEEEeCcCHHHHHHHHHhc----CCCCHHHHHHHHHH
Confidence            124456666644  78999997643   3344444 44444 688887 5667799999977    34456778888876


Q ss_pred             HhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      .....    ..+. ....+++ ++ ++++.++++...+.+
T Consensus       150 a~~~~----~~~~-~fd~~I~-n~-~l~~~~~~l~~~i~~  182 (184)
T smart00072      150 AQKEA----QEYH-LFDYVIV-ND-DLEDAYEELKEILEA  182 (184)
T ss_pred             HHHHH----hhhc-cCCEEEE-Cc-CHHHHHHHHHHHHHh
Confidence            54321    1221 1224444 43 788999999888754

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK06547 hypothetical protein; Provisional

Probab=99.51  E-value=4.3e-14  Score=100.32  Aligned_cols=126  Identities=16%  Similarity=0.206  Sum_probs=74.5

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHH-HcCCCCCH--HHHHHHHHHH
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPS--EVTIKLLQKA   92 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~   92 (215)
                      +.+..+++|+|.|++||||||+++.|++.++..+++.|+++... .........+...+ ..++....  +.........
T Consensus        10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~   88 (172)
T PRK06547         10 LCGGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGW-HGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDW   88 (172)
T ss_pred             hhcCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccc-ccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCc
Confidence            45678899999999999999999999999999999998876532 11111111122222 22221100  0000000000


Q ss_pred             HHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        93 ~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      ....++..+|++|..........+..  .....+.|||++|.+++.+|+.+|
T Consensus        89 ~~l~~~~vVIvEG~~al~~~~r~~~d--~~g~v~~I~ld~~~~vr~~R~~~R  138 (172)
T PRK06547         89 VSVEPGRRLIIEGVGSLTAANVALAS--LLGEVLTVWLDGPEALRKERALAR  138 (172)
T ss_pred             EEeCCCCeEEEEehhhccHHHHHHhc--cCCCEEEEEEECCHHHHHHHHHhc
Confidence            11113568889995433333222221  122237999999999999999988

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.50  E-value=2.2e-12  Score=91.17  Aligned_cols=155  Identities=13%  Similarity=0.139  Sum_probs=86.7

Q ss_pred             EcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH----HcCCCcHHHHHHHHHcCCCCCH-HHHHHHHHHHHHccCCCeE
Q 028025           27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENGTMIQNMIKEGKIVPS-EVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        27 ~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  101 (215)
                      .|+|||||||+++.|++.++..+++.|.+.....    ..+....+.        ...+. ........... ...+..+
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~v   71 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDD--------DRKPWLQALNDAAFAMQ-RTNKVSL   71 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChh--------hHHHHHHHHHHHHHHHH-HcCCceE
Confidence            4999999999999999999998888865421110    001111110        00000 01111111111 2224455


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEE
Q 028025          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR  181 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (215)
                      |+ ........+..+.  ....+..++||++|++++.+|+..|.  .+.-.++-+...+..+.    +..   .....++
T Consensus        72 iv-~s~~~~~~r~~~~--~~~~~~~~v~l~a~~~~l~~Rl~~R~--~~~a~~~vl~~Q~~~~e----p~~---~~e~~~~  139 (163)
T PRK11545         72 IV-CSALKKHYRDLLR--EGNPNLSFIYLKGDFDVIESRLKARK--GHFFKTQMLVTQFETLQ----EPG---ADETDVL  139 (163)
T ss_pred             EE-EecchHHHHHHHH--ccCCCEEEEEEECCHHHHHHHHHhcc--CCCCCHHHHHHHHHHcC----CCC---CCCCCEE
Confidence            55 3323333333333  33445679999999999999999992  22223444444333322    110   0112478


Q ss_pred             EEcCCCCHHHHHHHHHHhhCC
Q 028025          182 KIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       182 ~id~~~~~~e~~~~i~~~l~~  202 (215)
                      .+|++.+++++...+...++.
T Consensus       140 ~id~~~~~~~~~~~~~~~~~~  160 (163)
T PRK11545        140 VVDIDQPLEGVVASTIEVIKK  160 (163)
T ss_pred             EEeCCCCHHHHHHHHHHHHHH
Confidence            899998999999999888753

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.48  E-value=6e-14  Score=94.37  Aligned_cols=106  Identities=30%  Similarity=0.486  Sum_probs=59.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----cCC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE----SGN   98 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   98 (215)
                      +|+|.|+|||||||+|+.|++++|+.+++.|+++........          ..+.........+.+...+..    ...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~   70 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIER----------DDDEREYIDADIDLLDDILEQLQNKPDN   70 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHG----------CTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEecccccc----------CcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence            689999999999999999999999999999994321100000          000000011122333333322    247


Q ss_pred             CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      ..+|+||... ... ..    .....+.+||+.++.+.+..|+.+|
T Consensus        71 ~~~ii~g~~~-~~~-~~----~~~~~~~~i~l~~~~~~~~~~~~~R  110 (121)
T PF13207_consen   71 DNWIIDGSYE-SEM-EI----RLPEFDHVIYLDAPDEECRERRLKR  110 (121)
T ss_dssp             -EEEEECCSC-HCC-HS----CCHHGGCEEEEEEEEHHHHHHHHHH
T ss_pred             CeEEEeCCCc-cch-hh----hhhcCCEEEEEECCCHHHHHHHHHH
Confidence            7899999432 111 00    1112346899998888544444433

...

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=99.48  E-value=4.3e-12  Score=96.59  Aligned_cols=176  Identities=19%  Similarity=0.264  Sum_probs=97.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCC------CcHHHHHHHHHc--CCCCCHH-H-----
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS------ENGTMIQNMIKE--GKIVPSE-V-----   84 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~-~-----   84 (215)
                      .+|++|+|.|++||||||+|..|++++|+..+-..|.+++.+....      .........+..  ....+++ .     
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~  169 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFE  169 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHH
Confidence            5789999999999999999999999999874433577776654311      000001111110  0011111 1     


Q ss_pred             ---------HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe-cCHHHHHHHHhhc--cCCCCCCc
Q 028025           85 ---------TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNR--NQGREDDN  152 (215)
Q Consensus        85 ---------~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~-~~~e~~~~R~~~r--~~~~~~~~  152 (215)
                               ....+...+.+  +..+|++|.-....+...+.. ..... +.+++. .+++...+|...|  ...++.  
T Consensus       170 ~~~~~v~~gi~~~I~~~~~~--g~s~IiEGvhl~P~~i~~~~~-~~~~~-i~~~l~i~~ee~h~~RF~~R~~~~~r~~--  243 (301)
T PRK04220        170 RHVEPVSVGVEAVIERALKE--GISVIIEGVHIVPGFIKEKYL-ENPNV-FMFVLTLSDEEAHKARFYARARVSRRPA--  243 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHh--CCcEEEecCCCCHHHHHHhhh-cCCCE-EEEEEEECCHHHHHHHHHHHHhhhCCch--
Confidence                     12333333333  899999997665666555443 44443 344444 5668899999888  222322  


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                       +...+.+...+.....+.+.....+ +-+||+. ++++.++.+.+.+.+.
T Consensus       244 -~~y~~~~~~ir~iq~~l~~~a~~~~-ip~I~n~-~i~~s~~~~~~~i~~~  291 (301)
T PRK04220        244 -ERYLKNFEIIREINDYIVEKAKKHG-VPVIENI-SIEETVDKILEIITER  291 (301)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHhC-CCeecCc-cHHHHHHHHHHHHHHH
Confidence             2222333333333333444444433 4556663 6777777666655443

>PTZ00301 uridine kinase; Provisional

Probab=99.47  E-value=6e-13  Score=97.33  Aligned_cols=169  Identities=18%  Similarity=0.238  Sum_probs=85.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHHHHHHHH-----c-----CCCcH---HHHH---HHHHcC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIK-----S-----GSENG---TMIQ---NMIKEG   77 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~~~~~~~-----~-----~~~~~---~~~~---~~~~~~   77 (215)
                      .++|.|.|+|||||||+|+.|+++++       ..+++.|++++....     .     +.+..   +.+.   ..+..+
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g   82 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG   82 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence            47899999999999999999988872       235666666543210     0     00000   0011   111222


Q ss_pred             CCCCHHH----HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc---cCCCCC
Q 028025           78 KIVPSEV----TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR---NQGRED  150 (215)
Q Consensus        78 ~~~~~~~----~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r---~~~~~~  150 (215)
                      ..+....    ..........-.+..++|+||...-..  ..+..    ..|+.||++++.+++..|...|   ++|+  
T Consensus        83 ~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~--~~l~~----l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~--  154 (210)
T PTZ00301         83 KTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN--AELRN----EMDCLIFVDTPLDICLIRRAKRDMRERGR--  154 (210)
T ss_pred             CcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC--HHHHH----hCCEEEEEeCChhHHHHHHHhhhHHhcCC--
Confidence            1111000    000001111111367889999643111  12222    3578999999999999999888   2333  


Q ss_pred             CcHHHHHHHHHHHhhcchhHHHHHHhcC---cEEEEcCCCCHHHHHHHHHHhhC
Q 028025          151 DNVETIRKRFKVFLESSLPVVQYYEAKG---KVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                       ..+.+.++   |.....+....|-.+.   .-+++......+..+..+...+.
T Consensus       155 -~~e~v~~~---~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~  204 (210)
T PTZ00301        155 -TFESVIEQ---YEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLN  204 (210)
T ss_pred             -CHHHHHHH---HHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHH
Confidence             34444433   4443344443343221   22444444455555554444443

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.46  E-value=1.4e-11  Score=87.08  Aligned_cols=164  Identities=15%  Similarity=0.169  Sum_probs=85.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC--CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC-CCC-HHHHHHHHHHHHHcc-
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-IVP-SEVTIKLLQKAMEES-   96 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~-   96 (215)
                      .+|++.|+|.|||||+|+.|.+.+.  |.+++.|.+..............+. +-.... .-+ .......+...+... 
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~iaa~a   80 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLE-PAGDRPDGGPLFRRLYAAMHAAIAAMA   80 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEE-EETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCcccc-ccccCCchhHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999995  6788887776654322110000000 000000 000 011122222222221 


Q ss_pred             -CCCeEEEeCCCCCHHH-HHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHH
Q 028025           97 -GNDKFLIDGFPRNEEN-RAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY  174 (215)
Q Consensus        97 -~~~~~iidg~~~~~~~-~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (215)
                       .|..||+|.......+ ...|..+....+-++|-+.||.+++.+|-..|  +....-.   ...  .+......  ..|
T Consensus        81 ~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~R--gDR~~G~---a~~--q~~~Vh~~--~~Y  151 (174)
T PF07931_consen   81 RAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERAR--GDRPIGL---AAW--QAEHVHEG--GRY  151 (174)
T ss_dssp             HTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHH--TSSSTTH---HHH--HTTGGGTT-----
T ss_pred             hCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhc--CCcchHH---HHH--HHhhcccC--CCC
Confidence             2889999987666664 55664434456678999999999999999988  2211111   111  11111111  112


Q ss_pred             HhcCcEEEEcC-CCCHHHHHHHHHHhh
Q 028025          175 EAKGKVRKIDA-AKPVAEVFDAVKAVF  200 (215)
Q Consensus       175 ~~~~~~~~id~-~~~~~e~~~~i~~~l  200 (215)
                          . +.+|+ ..+++|.++.|.+.+
T Consensus       152 ----D-leVDTs~~sp~ecA~~I~~~~  173 (174)
T PF07931_consen  152 ----D-LEVDTSATSPEECAREILARL  173 (174)
T ss_dssp             ----S-EEEETTSS-HHHHHHHHHTT-
T ss_pred             ----C-EEEECCCCCHHHHHHHHHHHh
Confidence                2 45555 679999999998776

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.46  E-value=1.3e-12  Score=94.10  Aligned_cols=163  Identities=17%  Similarity=0.233  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc---CCC----cHHHHHHHHHcCCCCCH--------HHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPS--------EVTI   86 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~--------~~~~   86 (215)
                      .+|+|.||+||||||+++.|++.++..++......+.....   +..    ....+......+.++..        ....
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~   81 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK   81 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence            57999999999999999999998765444332222221110   000    11223333333332211        1113


Q ss_pred             HHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhc
Q 028025           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES  166 (215)
Q Consensus        87 ~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~  166 (215)
                      ..+...+.+  +..+|+|..   ......+.. ....+..++++.++.+.+.+|+..|  +  .+..+.+.+|+......
T Consensus        82 ~~i~~~~~~--g~~vi~d~~---~~~~~~~~~-~~~~~~~i~~~~~~~e~~~~Rl~~r--~--~~~~~~i~~rl~~~~~~  151 (180)
T TIGR03263        82 SPVEEALAA--GKDVLLEID---VQGARQVKK-KFPDAVSIFILPPSLEELERRLRKR--G--TDSEEVIERRLAKAKKE  151 (180)
T ss_pred             HHHHHHHHC--CCeEEEECC---HHHHHHHHH-hCCCcEEEEEECCCHHHHHHHHHHc--C--CCCHHHHHHHHHHHHHH
Confidence            445555543  788999853   344444554 4444445666677789999999987  3  34556777787665432


Q ss_pred             chhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          167 SLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       167 ~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      .    . +......++.| + +.++++.++..++.
T Consensus       152 ~----~-~~~~~d~~i~n-~-~~~~~~~~l~~~~~  179 (180)
T TIGR03263       152 I----A-HADEFDYVIVN-D-DLEKAVEELKSIIL  179 (180)
T ss_pred             H----h-ccccCcEEEEC-C-CHHHHHHHHHHHHh
Confidence            1    1 12223344544 3 78999999988764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.45  E-value=7.8e-12  Score=90.29  Aligned_cols=159  Identities=18%  Similarity=0.224  Sum_probs=87.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHHHHHHHcCCCcHH-HHHHHHHcCCCCCHHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQKA   92 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   92 (215)
                      .++.+|+|+|+|||||||+++.|+..+   +  ..+++.|+ ++..+..+..+.. .......        . ...+...
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~-~r~~l~~~~~~~~~~~~~~~~--------~-~~~~~~~   85 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN-VRHGLNKDLGFSEEDRKENIR--------R-IGEVAKL   85 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH-HHhhhccccCCCHHHHHHHHH--------H-HHHHHHH
Confidence            567899999999999999999999987   2  34555544 4443322211111 0000000        0 1112222


Q ss_pred             HHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhH
Q 028025           93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV  170 (215)
Q Consensus        93 ~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (215)
                      +.. .|..+|+|+.......+..+..+....+..++||++|.+++.+|...+  ...+.+        .+..+..    .
T Consensus        86 ~~~-~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~--------~~~~l~~----~  152 (184)
T TIGR00455        86 FVR-NGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNG--------EIKGFTG----I  152 (184)
T ss_pred             HHc-CCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcC--------CccCccc----c
Confidence            222 388999998655566666666532223456899999999999993211  000000        0000100    1


Q ss_pred             HHHHHh-cCcEEEEcC-CCCHHHHHHHHHHhh
Q 028025          171 VQYYEA-KGKVRKIDA-AKPVAEVFDAVKAVF  200 (215)
Q Consensus       171 ~~~~~~-~~~~~~id~-~~~~~e~~~~i~~~l  200 (215)
                      ...|.. ....++||+ ..++++++++|...+
T Consensus       153 ~~~y~~p~~adl~Idt~~~~~~~~~~~i~~~l  184 (184)
T TIGR00455       153 DSPYEAPENPEVVLDTDQNDREECVGQIIEKL  184 (184)
T ss_pred             cCCCCCCCCCcEEEECCCCCHHHHHHHHHHhC
Confidence            111332 223467765 569999999887653

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.45  E-value=1.9e-12  Score=111.03  Aligned_cols=174  Identities=17%  Similarity=0.237  Sum_probs=102.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc----CCCcHH----------HHHHHHHc-----------
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS----GSENGT----------MIQNMIKE-----------   76 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~----~~~~~~----------~~~~~~~~-----------   76 (215)
                      ++|.|.|||||||||+|+.||+++|+.+++.|.++|.....    +.....          .+......           
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDS   81 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCC
Confidence            37999999999999999999999999999999999875421    221111          11111111           


Q ss_pred             ------CCCCCHHH-----------------H---HHHHHHHHH-ccC-------CCeEEEeCCCCCHHHHHHHHHhcCC
Q 028025           77 ------GKIVPSEV-----------------T---IKLLQKAME-ESG-------NDKFLIDGFPRNEENRAAFEAVTKI  122 (215)
Q Consensus        77 ------~~~~~~~~-----------------~---~~~~~~~~~-~~~-------~~~~iidg~~~~~~~~~~~~~~~~~  122 (215)
                            +..+...+                 +   ....++.+. ..+       +.++|+||.-  ..+      ...+
T Consensus        82 ~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~~~~~~~~~~~~~~~~~~v~eGRd--igt------vv~p  153 (712)
T PRK09518         82 PGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRAYIAREASADSFSGGLGIVAEGRD--ITT------VVAP  153 (712)
T ss_pred             cEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCccccccccCcEEEecCc--cce------EEec
Confidence                  00000000                 0   111122221 111       2389999842  111      1456


Q ss_pred             CCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH--HHhhcchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHh
Q 028025          123 EPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK--VFLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAV  199 (215)
Q Consensus       123 ~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~  199 (215)
                      ..++-|||+++.++..+|...+  ... .+.+.+.+.+.  ++.+. +.. .++......+++|+ ..+++++++.|..+
T Consensus       154 ~a~~K~~l~A~~~~Ra~Rr~~~--~~~-~~~~~~~~~~~~Rd~~d~-R~~-~pl~~~~da~~idts~~~~~~v~~~i~~~  228 (712)
T PRK09518        154 DAEVRILLTAREEVRQARRSGQ--DRS-ETPGVVLEDVAARDEADS-KVT-SFLSAADGVTTLDNSDLDFDETLDLLIGL  228 (712)
T ss_pred             CCCeEEEEECCHHHHHHHHHHh--hhc-CCHHHHHHHHHHHhhhcc-ccc-CCCCCCCCeEEEECCCCCHHHHHHHHHHH
Confidence            7889999999999988888766  111 33333333332  22233 222 22333345677776 78999999999999


Q ss_pred             hCCCccccc
Q 028025          200 FTPKDEKVK  208 (215)
Q Consensus       200 l~~~~~~~~  208 (215)
                      ++.......
T Consensus       229 i~~~~~~~~  237 (712)
T PRK09518        229 VEDAIEEQE  237 (712)
T ss_pred             HHhhhhhhh
Confidence            987766543

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=99.45  E-value=3.6e-12  Score=109.78  Aligned_cols=44  Identities=25%  Similarity=0.407  Sum_probs=39.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK   61 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~   61 (215)
                      +...++|.|.|||||||||+|+.||+.+++.+++.|.++|....
T Consensus        31 ~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a~   74 (863)
T PRK12269         31 PMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTL   74 (863)
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHH
Confidence            33446999999999999999999999999999999999998743

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.45  E-value=7.7e-12  Score=91.86  Aligned_cols=168  Identities=18%  Similarity=0.255  Sum_probs=94.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc---CCC----cHHHHHHHHHcCCCCCH--------H
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPS--------E   83 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~--------~   83 (215)
                      .++.+|+|.|++||||||+++.|++.++..++......+.....   +..    ..+.+......+.+...        .
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~   82 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG   82 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence            46778999999999999999999998763222222221111000   000    11222222222222110        0


Q ss_pred             HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028025           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF  163 (215)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~  163 (215)
                      .....+...+..  +..+|+|..+   .....+.. ....+..+++..++.+++.+|+..|  +  .+..+.+.+|+..+
T Consensus        83 ~~~~~i~~~l~~--g~~vi~dl~~---~g~~~l~~-~~~~~~~I~i~~~s~~~l~~Rl~~R--~--~~~~~~i~~rl~~~  152 (205)
T PRK00300         83 TPRSPVEEALAA--GKDVLLEIDW---QGARQVKK-KMPDAVSIFILPPSLEELERRLRGR--G--TDSEEVIARRLAKA  152 (205)
T ss_pred             CcHHHHHHHHHc--CCeEEEeCCH---HHHHHHHH-hCCCcEEEEEECcCHHHHHHHHHhc--C--CCCHHHHHHHHHHH
Confidence            112334444443  7788888543   33344444 3333333444466788999999987  3  35567888888776


Q ss_pred             hhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      .....    .+.. ...+++|+  +++++++++...+...
T Consensus       153 ~~~~~----~~~~-~d~vi~n~--~~e~~~~~l~~il~~~  185 (205)
T PRK00300        153 REEIA----HASE-YDYVIVND--DLDTALEELKAIIRAE  185 (205)
T ss_pred             HHHHH----hHHh-CCEEEECC--CHHHHHHHHHHHHHHH
Confidence            54322    2222 23455543  7999999999988765

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.44  E-value=8e-12  Score=89.49  Aligned_cols=161  Identities=18%  Similarity=0.209  Sum_probs=86.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHH-HHHHHHcCCCCCHHHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTM-IQNMIKEGKIVPSEVTIKLLQKAM   93 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   93 (215)
                      ++.+|+|+|+|||||||+++.|+..+.     ..+++.|.+ +..+..+...... ......         ....+...+
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r~~~~~---------~~~~~a~~~   72 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDRDTNIR---------RIGFVANLL   72 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhHHHHHH---------HHHHHHHHH
Confidence            467999999999999999999999883     456666543 4433322111100 000000         011222222


Q ss_pred             HccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHH
Q 028025           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY  173 (215)
Q Consensus        94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (215)
                      .. .+.++++|+..........+.. .. ....++||++|.+++.+|.. |  +..   .......+..+.....++   
T Consensus        73 ~~-~g~~vi~~~~~~~~~~~~~l~~-~~-~~~~~v~l~~~~e~~~~R~~-~--~l~---~~~~~~~i~~~~~~~~~~---  140 (175)
T PRK00889         73 TR-HGVIVLVSAISPYRETREEVRA-NI-GNFLEVFVDAPLEVCEQRDV-K--GLY---AKARAGEIKHFTGIDDPY---  140 (175)
T ss_pred             Hh-CCCEEEEecCCCCHHHHHHHHh-hc-CCeEEEEEcCCHHHHHHhCc-c--cHH---HHHHcCCCCCCcccCCCC---
Confidence            22 3677888875333344444444 32 23459999999999999952 2  100   000000000011111121   


Q ss_pred             HH-hcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          174 YE-AKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       174 ~~-~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      |. ....+.+.+++.++++++++|...+..
T Consensus       141 ~~p~~ad~~i~~~~~~~~~~~~~i~~~l~~  170 (175)
T PRK00889        141 EPPLNPEVECRTDLESLEESVDKVLQKLEE  170 (175)
T ss_pred             CCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            22 123455555677999999999998853

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.44  E-value=2.7e-12  Score=97.36  Aligned_cols=158  Identities=16%  Similarity=0.225  Sum_probs=74.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (215)
                      ++|+|+|.|||||||+|+.|++.+.     ..+++.+++ .  +.... +.....+...      ...+...+.+.+.. 
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~-~--~~~~~-y~~~~~Ek~~------R~~l~s~v~r~ls~-   70 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSL-G--IDRND-YADSKKEKEA------RGSLKSAVERALSK-   70 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHH-H---TTSS-S--GGGHHHH------HHHHHHHHHHHHTT-
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccccc-c--cchhh-hhchhhhHHH------HHHHHHHHHHhhcc-
Confidence            4799999999999999999999863     345554333 2  11111 1100000000      11224455555543 


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHH
Q 028025           97 GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY  174 (215)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (215)
                       ...||+|+-......+..+..+  ....+..+||+.++.+.+.+|..+|  +......+++..++..-.+.-.+ ...|
T Consensus        71 -~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R--~~~~~~~~e~i~~m~~RfE~P~~-~nrW  146 (270)
T PF08433_consen   71 -DTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKR--PEPERYPEETIDDMIQRFEEPDP-KNRW  146 (270)
T ss_dssp             --SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHT--T-S--S-HHHHHHHHHH---TTS-S-GG
T ss_pred             -CeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhcc--CCCCCCCHHHHHHHHHHhcCCCC-CCCc
Confidence             6899999855544444444433  4555567999999999999999998  33322333333333221111111 1223


Q ss_pred             HhcCcEEEEcC---CCCHHHHHHHH
Q 028025          175 EAKGKVRKIDA---AKPVAEVFDAV  196 (215)
Q Consensus       175 ~~~~~~~~id~---~~~~~e~~~~i  196 (215)
                      +.+  .+.++.   ..+.+++++.+
T Consensus       147 D~p--lf~i~~~~~~~~~~~I~~~l  169 (270)
T PF08433_consen  147 DSP--LFTIDSSDEELPLEEIWNAL  169 (270)
T ss_dssp             GS---SEEEE-TTS---HHHHHHHH
T ss_pred             cCC--eEEEecCCCCCCHHHHHHHH
Confidence            333  455552   44566777776

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK06696 uridine kinase; Validated

Probab=99.44  E-value=7.3e-13  Score=98.47  Aligned_cols=121  Identities=19%  Similarity=0.230  Sum_probs=69.4

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh---CCeE--eeHHHHHHHHHHc---C--CC--------cHHHHHHHHHc--
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---GYTH--LSAGDLLRAEIKS---G--SE--------NGTMIQNMIKE--   76 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~---~~~~--i~~~~~~~~~~~~---~--~~--------~~~~~~~~~~~--   76 (215)
                      ..+++.+|+|.|++||||||+|+.|++.+   |..+  ++.|+++......   +  ..        ..+.+.+.+..  
T Consensus        18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l   97 (223)
T PRK06696         18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPL   97 (223)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhc
Confidence            35678999999999999999999999999   4444  4577776543221   0  00        01122222111  


Q ss_pred             --CCC--CC---HHHHH-HHHHHHHH-ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           77 --GKI--VP---SEVTI-KLLQKAME-ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        77 --~~~--~~---~~~~~-~~~~~~~~-~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                        +..  +.   ..... ........ ..++..+|+||.....   ..+.    ...|++|||++|.+++.+|+..|
T Consensus        98 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~---~~~~----~~~d~~i~v~~~~e~~~~R~~~R  167 (223)
T PRK06696         98 GPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLR---PELR----DLWDYKIFLDTDFEVSRRRGAKR  167 (223)
T ss_pred             cCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhh---hhHH----hhCCEEEEEECCHHHHHHHHHHh
Confidence              110  00   01001 11111111 1225688999853211   1222    24578999999999999999988

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=99.43  E-value=3.2e-11  Score=92.17  Aligned_cols=150  Identities=19%  Similarity=0.244  Sum_probs=82.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--cC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--SG   97 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   97 (215)
                      ...+|+|+|++||||||+++.|. ..|+.+++.                           .+......+++.....  ..
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~---------------------------~~~~L~~~l~~~~~~~~~~~   56 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN---------------------------LPPSLLPKLVELLAQSGGIR   56 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHH-HcCCeEECC---------------------------cCHHHHHHHHHHHHhcCCCC
Confidence            34589999999999999999995 568766632                           1122222232222221  12


Q ss_pred             CCeEEEeCCCCCH--HHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHH
Q 028025           98 NDKFLIDGFPRNE--ENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY  174 (215)
Q Consensus        98 ~~~~iidg~~~~~--~~~~~~~~~-~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (215)
                      .-.+++|......  .....+..+ .......+|||+++.+++.+|+..+.+.++-.....+.+.+...+....+    +
T Consensus        57 ~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~p----l  132 (288)
T PRK05416         57 KVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAP----L  132 (288)
T ss_pred             CeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhh----H
Confidence            4577888632211  111222222 11223358999999999999997531122211111222222222222222    2


Q ss_pred             HhcCcEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025          175 EAKGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       175 ~~~~~~~~id~-~~~~~e~~~~i~~~l~~  202 (215)
                      ..... ++||+ +.+++++.++|...+..
T Consensus       133 ~~~AD-ivIDTs~ls~~el~e~I~~~l~~  160 (288)
T PRK05416        133 RERAD-LVIDTSELSVHQLRERIRERFGG  160 (288)
T ss_pred             HHhCC-EEEECCCCCHHHHHHHHHHHHhc
Confidence            23333 44555 66999999999998865

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.42  E-value=9.9e-12  Score=101.90  Aligned_cols=102  Identities=22%  Similarity=0.364  Sum_probs=78.9

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (215)
                      .+.++.+|++.|+|||||||+|+.+++..++.+++.|++- .                       ...........+.+ 
T Consensus       365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg-~-----------------------~~~~~~~a~~~L~~-  419 (526)
T TIGR01663       365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG-S-----------------------TQNCLTACERALDQ-  419 (526)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH-H-----------------------HHHHHHHHHHHHhC-
Confidence            4567899999999999999999999999999999997641 1                       01123445555544 


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           97 GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                       +..+|+|+.......+..|..+  ....+-.++++++|.+++.+|+..|
T Consensus       420 -G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R  468 (526)
T TIGR01663       420 -GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFR  468 (526)
T ss_pred             -CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhh
Confidence             7899999988777777766665  3333556899999999999999988

Note that the EC number for the kinase function is: 2.7.1.78

>TIGR00235 udk uridine kinase

Probab=99.40  E-value=3.4e-12  Score=93.84  Aligned_cols=174  Identities=14%  Similarity=0.201  Sum_probs=87.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHH-----Hc-CCCc-------HHHHHHH---HHcCC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEI-----KS-GSEN-------GTMIQNM---IKEGK   78 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~-----~~-~~~~-------~~~~~~~---~~~~~   78 (215)
                      ++++.+|+|.|++||||||+++.|+..++   ..+++.|+++....     .. +..+       ...+.+.   +..+.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~   82 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS   82 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence            45678999999999999999999999885   56677766543210     00 0000       0001111   11111


Q ss_pred             CCCHHHH----HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcH
Q 028025           79 IVPSEVT----IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNV  153 (215)
Q Consensus        79 ~~~~~~~----~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~~~~  153 (215)
                      .......    ...........+...+|+||.+...+  ..+.    ..+|.+|||+++.+++..|+..| ...+. ...
T Consensus        83 ~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~--~~~~----~~~d~~I~v~~~~~~~l~R~~~R~~~~rg-~~~  155 (207)
T TIGR00235        83 PIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFD--ERLR----DLMDLKIFVDTPLDIRLIRRIERDINERG-RSL  155 (207)
T ss_pred             CEecccceeecCCCCCceEEeCCCCEEEEEehhhhch--HhHH----HhCCEEEEEECChhHHHHHHHHHHHHhhC-CCH
Confidence            1100000    00000000011256889998653222  1122    24778999999999999998877 11111 222


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHhc---CcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          154 ETIRKRFKVFLESSLPVVQYYEAK---GKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      +...++   |.....+....+...   ..-+++++....+..++.+...++
T Consensus       156 ~~~~~~---~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~  203 (207)
T TIGR00235       156 DSVIDQ---YRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIK  203 (207)
T ss_pred             HHHHHH---HHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHH
Confidence            333333   222222222112111   123566666666777766655543

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.40  E-value=5.8e-12  Score=87.14  Aligned_cols=112  Identities=20%  Similarity=0.202  Sum_probs=64.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHH-HHHHHHcCCCCCHHHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTM-IQNMIKEGKIVPSEVTIKLLQKAM   93 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   93 (215)
                      ++.+|+|+|.|||||||+|+.|.++|.     ..+++. |.+|..+..+-.+... -...+.         ....+...+
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~e~~r---------r~~~~A~ll   70 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDREENIR---------RIAEVAKLL   70 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHHHHHH---------HHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHHHHHH---------HHHHHHHHH
Confidence            578999999999999999999999983     455655 5555543332222111 001111         123333444


Q ss_pred             HccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh
Q 028025           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL  142 (215)
Q Consensus        94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~  142 (215)
                      .. .|..+|+...-...+.+............+.|||+||.+++.+|-.
T Consensus        71 ~~-~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~  118 (156)
T PF01583_consen   71 AD-QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDP  118 (156)
T ss_dssp             HH-TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTT
T ss_pred             Hh-CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCc
Confidence            43 3888888864444444444444212224579999999999999954

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=99.40  E-value=6.9e-11  Score=94.60  Aligned_cols=177  Identities=14%  Similarity=0.136  Sum_probs=93.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcH---------HHHHHHHHcCC------CCCHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG---------TMIQNMIKEGK------IVPSE   83 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~------~~~~~   83 (215)
                      .+|.+|++.|+|||||||++..|++++++..+-..|.+++.+..-....         .........+.      .....
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~  332 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAE  332 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchHH
Confidence            4699999999999999999999999999975544466766554421100         00011111111      01111


Q ss_pred             H--------------HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCC
Q 028025           84 V--------------TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGR  148 (215)
Q Consensus        84 ~--------------~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~e~~~~R~~~r~~~~  148 (215)
                      .              ...+++..+..  +..+|+||.-........... .... .+.+.+.+ +++...+|+..|....
T Consensus       333 vi~Gf~~q~~~V~~gi~~vI~r~l~e--G~SvIIEGVHl~P~~i~~~~~-~~~~-~i~flv~isdeeeH~~Rf~~Ra~~~  408 (475)
T PRK12337        333 VLRGFRDQVQQVAVGLGAIQERSAQE--GTSLVLEGVHLVPGYLRHPYQ-AGAL-VVPMLVTLPDEALHRRRFELRDRET  408 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc--CCeEEEECCCCCHHHHHHHHh-cCCc-eEEEEEEECCHHHHHHHHHHHhhhc
Confidence            1              13334444443  899999995433333332221 2222 22345555 5667899999881111


Q ss_pred             C-CCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          149 E-DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       149 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      . ....+...+.+...+....-+....... ++-+|++. ++++.++.+.+.+.
T Consensus       409 ~~~r~~~ky~~~f~~IR~IQdyLv~~A~~~-~ipvI~n~-nid~tv~~~l~~i~  460 (475)
T PRK12337        409 GASRPRERYLRHFEEIRLIQDHLLRLARQE-GVPVLPGE-DLDESIDKALEVVL  460 (475)
T ss_pred             cCCCchhHHHHhHHHHHHHHHHHHHHHHHc-CCCeecCc-cHHHHHHHHHHHHH
Confidence            1 1123344444444444333344433333 34456553 66666666655544

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.39  E-value=1.6e-11  Score=100.56  Aligned_cols=151  Identities=21%  Similarity=0.282  Sum_probs=85.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      |.|+|+|+|||||||+++.|++.+++.+++.|+.+.+.  .+....+.+..   .+.....+.-.+.+++....  ...+
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~--~g~~i~~i~~~---~Ge~~fr~~E~~~l~~l~~~--~~~V   73 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR--EGRSVRRIFEE---DGEEYFRLKEKELLRELVER--DNVV   73 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH--cCCCHHHHHHH---hhhHHHHHHHHHHHHHHhhc--CCEE
Confidence            36999999999999999999999999999999887663  23222222221   22222223333444443222  2223


Q ss_pred             EEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCC--CcHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025          102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRED--DNVETIRKRFKVFLESSLPVVQYYEAK  177 (215)
Q Consensus       102 iidg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (215)
                      +-.|  .......+..+..      ..+|||+++.+++.+|+..+  +|+-  ...+.+    ...+....++   |...
T Consensus        74 is~Gggvv~~~~~r~~l~~------~~vI~L~as~e~l~~Rl~~~--~RPLl~~~~e~l----~~L~~~R~~l---Y~~~  138 (488)
T PRK13951         74 VATGGGVVIDPENRELLKK------EKTLFLYAPPEVLMERVTTE--NRPLLREGKERI----REIWERRKQF---YTEF  138 (488)
T ss_pred             EECCCccccChHHHHHHhc------CeEEEEECCHHHHHHHhccC--CCCCccccHHHH----HHHHHHHHHH---Hhcc
Confidence            3233  1222233333322      35899999999999999876  4442  122222    2222222333   4332


Q ss_pred             CcEEEEcC-CCCHHHHHHHHH
Q 028025          178 GKVRKIDA-AKPVAEVFDAVK  197 (215)
Q Consensus       178 ~~~~~id~-~~~~~e~~~~i~  197 (215)
                         ..+|. +.++++++++|.
T Consensus       139 ---~~IDt~~~s~~e~~~~iv  156 (488)
T PRK13951        139 ---RGIDTSKLNEWETTALVV  156 (488)
T ss_pred             ---cEEECCCCCHHHHHHHHH
Confidence               34555 567777776663

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.39  E-value=2.3e-11  Score=88.80  Aligned_cols=158  Identities=20%  Similarity=0.219  Sum_probs=83.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHH--HH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL--LQ   90 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   90 (215)
                      +.++.+|+|+|++||||||+++.|+..+     +..+++.|++. ..+.......          .....+....+  +.
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~-~~~~~~~~~~----------~~~~~~~~~~l~~~a   89 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR-HGLCSDLGFS----------DADRKENIRRVGEVA   89 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH-hhhhhcCCcC----------cccHHHHHHHHHHHH
Confidence            3578899999999999999999999987     24556554433 2211111000          00001111111  12


Q ss_pred             HHHHccCCCeEEEeCCCC-CHHHHHHHHHhcCCCCcE-EEEEecCHHHHHHHHhhc---cCCCCCCcHHHHHHHHHHHhh
Q 028025           91 KAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEF-VLFFDCSEEEMERRILNR---NQGREDDNVETIRKRFKVFLE  165 (215)
Q Consensus        91 ~~~~~~~~~~~iidg~~~-~~~~~~~~~~~~~~~~~~-~i~L~~~~e~~~~R~~~r---~~~~~~~~~~~~~~~~~~~~~  165 (215)
                      ..+.. .+..+|. ++.. ....+..+.. ......+ +|||++|.+++.+|.. |   ...+.++ .       ..+..
T Consensus        90 ~~~~~-~G~~VI~-~~~~~~~~~R~~~r~-~l~~~~~i~V~L~~~~e~~~~R~~-r~l~~~~~~~~-~-------~~l~~  157 (198)
T PRK03846         90 KLMVD-AGLVVLT-AFISPHRAERQMVRE-RLGEGEFIEVFVDTPLAICEARDP-KGLYKKARAGE-I-------RNFTG  157 (198)
T ss_pred             HHHhh-CCCEEEE-EeCCCCHHHHHHHHH-HcccCCEEEEEEcCCHHHHHhcCc-hhHHHHhhcCC-c-------cCccc
Confidence            22222 2555554 4443 3455555555 2222234 7999999999999922 2   0011000 0       01111


Q ss_pred             cchhHHHHHHhcC-cEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025          166 SSLPVVQYYEAKG-KVRKIDA-AKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       166 ~~~~~~~~~~~~~-~~~~id~-~~~~~e~~~~i~~~l~~  202 (215)
                      .    ...|..+. ..++||+ +.++++++++|...+..
T Consensus       158 ~----r~~Y~~p~~ad~~Idt~~~~~~~vv~~Il~~l~~  192 (198)
T PRK03846        158 I----DSVYEAPESPEIHLDTGEQLVTNLVEQLLDYLRQ  192 (198)
T ss_pred             c----cccCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Confidence            1    11144221 2356664 67999999999988854

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=99.38  E-value=3.6e-12  Score=86.51  Aligned_cols=106  Identities=28%  Similarity=0.403  Sum_probs=57.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc-CCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH----ccCC
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME----ESGN   98 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~   98 (215)
                      |+|.|+|||||||+|+.|+++++       +.+...... +......-.................++.....    ...+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLG-------DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKG   73 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC-------HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CEEECCCCCCHHHHHHHHHHHHC-------cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccC
Confidence            78999999999999999999983       222222111 11111000011122233344443333332222    2347


Q ss_pred             CeEEEeCCCCCHHHHHHHHHhcCCCCcEE-EEEecCHHHHHHHHhhc
Q 028025           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFV-LFFDCSEEEMERRILNR  144 (215)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~-i~L~~~~e~~~~R~~~r  144 (215)
                      ..+|+|+.......        ....... |+|+||++++.+|+.+|
T Consensus        74 ~~~iid~~~~~~~~--------~~~~~~~~i~L~~~~e~~~~R~~~R  112 (129)
T PF13238_consen   74 RNIIIDGILSNLEL--------ERLFDIKFIFLDCSPEELRKRLKKR  112 (129)
T ss_dssp             SCEEEEESSEEECE--------TTEEEESSEEEE--HHHHHHHHHCT
T ss_pred             CcEEEecccchhcc--------cccceeeEEEEECCHHHHHHHHHhC
Confidence            88999986532211        0111122 99999999999999988

...

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.38  E-value=1.2e-11  Score=103.07  Aligned_cols=165  Identities=15%  Similarity=0.119  Sum_probs=89.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC------eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY------THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (215)
                      .++.+|+|+|+|||||||+++.|++.++.      .+++.| .++..+.....+.+.-.....        .....+...
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er~~~~--------~~l~~~a~~  460 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDRDLNI--------LRIGFVASE  460 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHHHHHH--------HHHHHHHHH
Confidence            45789999999999999999999999985      677764 455543322211111100000        001112222


Q ss_pred             HHccCCCeEEEeCCCCCHHHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHH
Q 028025           93 MEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV  171 (215)
Q Consensus        93 ~~~~~~~~~iidg~~~~~~~~~~~~~~-~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (215)
                      +... |.++|+|........+..+..+ ......++|||++|.+++.+|..+.   -.....   ...+..+.....+  
T Consensus       461 v~~~-Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~---Ll~~~~---~~~i~~l~~~R~~--  531 (568)
T PRK05537        461 ITKN-GGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKG---LYAKAR---EGKIKGFTGISDP--  531 (568)
T ss_pred             HHhC-CCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcccc---ccccch---hchhhcccccccc--
Confidence            3222 7888888643323333333332 1111225899999999999996432   000000   0112222221122  


Q ss_pred             HHHHhcCcEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025          172 QYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       172 ~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~~  202 (215)
                       +|......++||+ ..++++++++|...+..
T Consensus       532 -yy~p~~Adl~IDt~~~s~~eiv~~Il~~L~~  562 (568)
T PRK05537        532 -YEPPANPELVIDTTNVTPDECAHKILLYLEE  562 (568)
T ss_pred             -ccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence             2321222366666 46999999999988764

>PRK07667 uridine kinase; Provisional

Probab=99.38  E-value=8.7e-12  Score=90.58  Aligned_cols=131  Identities=16%  Similarity=0.211  Sum_probs=75.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHc---C-CCcH---------HHHH----HHHHc
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKS---G-SENG---------TMIQ----NMIKE   76 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~---~-~~~~---------~~~~----~~~~~   76 (215)
                      +.+.+|.|.|+|||||||+|+.|++.++     ..+++.|+++......   + ....         ..+.    ..+..
T Consensus        15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~   94 (193)
T PRK07667         15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQN   94 (193)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcC
Confidence            4558999999999999999999999884     5688898877654322   1 1110         0010    11111


Q ss_pred             CCCCCHHHH----HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025           77 GKIVPSEVT----IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (215)
Q Consensus        77 ~~~~~~~~~----~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~  152 (215)
                      +..+.....    ...........+...+|+||.....   ..+..    .+|.+|++++|+++..+|+.+|    ....
T Consensus        95 ~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~---~~~~~----~~d~~v~V~~~~~~~~~R~~~r----~~~~  163 (193)
T PRK07667         95 ETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQR---KEWRD----FFHYMVYLDCPRETRFLRESEE----TQKN  163 (193)
T ss_pred             CCeEEEeeeccccccccccceecCCCCEEEEEehhhhh---hhHHh----hceEEEEEECCHHHHHHHHhcc----cHhH
Confidence            111110000    0001011111125789999964211   22222    3689999999999999999976    3334


Q ss_pred             HHHHHHHH
Q 028025          153 VETIRKRF  160 (215)
Q Consensus       153 ~~~~~~~~  160 (215)
                      .+..++|+
T Consensus       164 ~~~~~~r~  171 (193)
T PRK07667        164 LSKFKNRY  171 (193)
T ss_pred             HHHHHHHh
Confidence            44444443

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.36  E-value=1.3e-11  Score=90.15  Aligned_cols=35  Identities=29%  Similarity=0.515  Sum_probs=29.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh---CCeEeeHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLR   57 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~---~~~~i~~~~~~~   57 (215)
                      +|+|.|++||||||+++.|+..+   +..+++.|+++.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~   38 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK   38 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence            58999999999999999999987   367788877653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PLN02348 phosphoribulokinase

Probab=99.34  E-value=8.4e-12  Score=97.98  Aligned_cols=133  Identities=15%  Similarity=0.234  Sum_probs=73.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC--------------------eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY--------------------THLSAGDLLRAEIKSGSENGTMIQNMIKEGK   78 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~--------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (215)
                      .++.+|.|.|++||||||+++.|++.++.                    .+++.||++..........+.   .. .+..
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~---t~-ldP~  122 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGV---TA-LDPR  122 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCC---cc-CCcc
Confidence            46889999999999999999999999962                    478888875321110000000   00 0000


Q ss_pred             CCCHHHHHHHHHHHHH---------------------ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHH
Q 028025           79 IVPSEVTIKLLQKAME---------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (215)
Q Consensus        79 ~~~~~~~~~~~~~~~~---------------------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~  137 (215)
                      ....+.+.+.+.....                     ..+...+|+||...-...     . ....+|+.|||+++.++.
T Consensus       123 a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e-----~-lr~l~D~~IyVd~~~dvr  196 (395)
T PLN02348        123 ANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDE-----R-VRDLLDFSIYLDISDDVK  196 (395)
T ss_pred             cccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCc-----c-ccccCcEEEEEECCHHHH
Confidence            0011111111111110                     112678899984211110     1 233578999999999998


Q ss_pred             HHHHhhccCCCCCCcHHHHHHHHH
Q 028025          138 ERRILNRNQGREDDNVETIRKRFK  161 (215)
Q Consensus       138 ~~R~~~r~~~~~~~~~~~~~~~~~  161 (215)
                      ..|..+|...+.+...+++.+++.
T Consensus       197 l~RRI~RD~~eRG~S~EeV~~~i~  220 (395)
T PLN02348        197 FAWKIQRDMAERGHSLESIKASIE  220 (395)
T ss_pred             HHHHHHhhHhhcCCCHHHHHHHHH
Confidence            877777711112234566666654

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=99.34  E-value=1.3e-10  Score=84.93  Aligned_cols=178  Identities=19%  Similarity=0.247  Sum_probs=98.8

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCC------cHHHHHHHHH----cCCCCC----H
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSE------NGTMIQNMIK----EGKIVP----S   82 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~----~   82 (215)
                      .+..|.+|+|.|+||+||||+|..+|.++|...+-..|.+|+.+..-..      .....-.+++    .....|    .
T Consensus        85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF  164 (299)
T COG2074          85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGF  164 (299)
T ss_pred             ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhH
Confidence            3456999999999999999999999999998777766888888766211      1111111111    111110    0


Q ss_pred             HH----H----HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe-cCHHHHHHHHhhc--cC--CCC
Q 028025           83 EV----T----IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNR--NQ--GRE  149 (215)
Q Consensus        83 ~~----~----~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~-~~~e~~~~R~~~r--~~--~~~  149 (215)
                      ..    +    ...+++++.+  |..+|++|.-........ .. .... .+.++|. .+++....|+.+|  .+  .++
T Consensus       165 ~dqa~~V~~GI~~VI~RAi~e--G~~lIIEGvHlVPg~i~~-~~-~~~n-~~~~~l~i~dee~Hr~RF~~R~~~t~~~rp  239 (299)
T COG2074         165 EDQASAVMVGIEAVIERAIEE--GEDLIIEGVHLVPGLIKE-EA-LGNN-VFMFMLYIADEELHRERFYDRIRYTHASRP  239 (299)
T ss_pred             HHHhHHHHHHHHHHHHHHHhc--CcceEEEeeeeccccccH-hh-hccc-eEEEEEEeCCHHHHHHHHHHHHHHHhccCc
Confidence            11    1    2334455543  899999983211111111 00 1112 2344444 4677788999988  22  222


Q ss_pred             CCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (215)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~  204 (215)
                         .....+.+..++....-+.+..++. ++=++++. +.++.++.+.+.+.+..
T Consensus       240 ---~~Ryl~yf~EiR~I~Dyl~~~Are~-gVPvI~n~-di~etv~~il~~i~~~~  289 (299)
T COG2074         240 ---GGRYLEYFKEIRTIHDYLVERAREH-GVPVIEND-DIDETVDRILEDIRKRT  289 (299)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHhc-CCCeeccc-cHHHHHHHHHHHHHHHH
Confidence               2344444444444433333433333 35566654 77888888777765443

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=99.33  E-value=3.1e-10  Score=85.34  Aligned_cols=149  Identities=18%  Similarity=0.240  Sum_probs=89.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---cCC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE---SGN   98 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~   98 (215)
                      .+|+|+|.+||||||..+.| |.+||..+                           .++|..++.++++.....   ...
T Consensus         2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cv---------------------------DNlP~~Ll~~l~~~~~~~~~~~~~   53 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRAL-EDLGYYCV---------------------------DNLPPSLLPQLIELLAQSNSKIEK   53 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHH-HhcCeeEE---------------------------cCCcHHHHHHHHHHHHhcCCCCce
Confidence            47999999999999999999 88999877                           344444444444433311   125


Q ss_pred             CeEEEeCCCCC--HHHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025           99 DKFLIDGFPRN--EENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (215)
Q Consensus        99 ~~~iidg~~~~--~~~~~~~~~~-~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (215)
                      -.+++|-....  ......+.++ .....-.++||+|+.+++.+|.....+..+-.....+.+.++..++.    +....
T Consensus        54 ~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~----L~~lr  129 (284)
T PF03668_consen   54 VAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKEREL----LEPLR  129 (284)
T ss_pred             EEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHH----HHHHH
Confidence            56788852211  1111122221 22223349999999999999998641121111111122334444443    33345


Q ss_pred             hcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          176 AKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       176 ~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      ....+++..++.++.++.+.|...+..
T Consensus       130 ~~Ad~vIDTs~l~~~~Lr~~i~~~~~~  156 (284)
T PF03668_consen  130 ERADLVIDTSNLSVHQLRERIRERFGG  156 (284)
T ss_pred             HhCCEEEECCCCCHHHHHHHHHHHhcc
Confidence            555555555588999999999998864

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=99.32  E-value=1.2e-12  Score=95.18  Aligned_cols=109  Identities=18%  Similarity=0.237  Sum_probs=60.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCC---------eEeeHHHHHHHHHHc-----C-CCcHHHHHHHHHcCCCCCHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGY---------THLSAGDLLRAEIKS-----G-SENGTMIQNMIKEGKIVPSEVTIK   87 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~---------~~i~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~   87 (215)
                      +|.|+|++||||||+|+.|++.++.         ..++.++.+......     . ....      .........+.+.+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~------~~~p~a~d~~~l~~   74 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYN------FDHPDAFDFDLLKE   74 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSS------TTSGGGBSHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccC------CCCccccCHHHHHH
Confidence            6899999999999999999999972         344555443322100     0 0000      00001112222333


Q ss_pred             HHHHHHH----------------------ccCCCeEEEeCCCCC-HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           88 LLQKAME----------------------ESGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        88 ~~~~~~~----------------------~~~~~~~iidg~~~~-~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      .+.....                      ..+..++|+||.... .+.   +.    ...|+.|||+++.+++..|...|
T Consensus        75 ~l~~L~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~---l~----~l~D~~ifld~~~~~~l~Rri~R  147 (194)
T PF00485_consen   75 DLKALKNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEE---LR----DLFDLKIFLDADEDLRLERRIQR  147 (194)
T ss_dssp             HHHHHHTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHC---HG----GG-SEEEEEEE-HHHHHHHHHHH
T ss_pred             HHHHHhCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeee---ec----ccceeEEEecccHHHHHHHHhhh
Confidence            3322111                      012578899995422 222   22    24678999999999988888777

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>COG0645 Predicted kinase [General function prediction only]

Probab=99.32  E-value=2.5e-10  Score=78.95  Aligned_cols=117  Identities=25%  Similarity=0.281  Sum_probs=74.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-cC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP---SEVTIKLLQKAMEE-SG   97 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~   97 (215)
                      +++++.|.|||||||+|+.|++.++..++..|++ +..+...+...+ -    ..+-..+   ......++...... ..
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~i-rk~L~g~p~~~r-~----~~g~ys~~~~~~vy~~l~~~A~l~l~~   75 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVI-RKRLFGVPEETR-G----PAGLYSPAATAAVYDELLGRAELLLSS   75 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHH-HHHhcCCccccc-C----CCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999999999999665 444344111000 0    0001111   01112222222111 12


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      |..||+|+......++..+..+  ...-+...|.+.++.+++..|+..|
T Consensus        76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR  124 (170)
T COG0645          76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAAR  124 (170)
T ss_pred             CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHh
Confidence            9999999976666555555543  2333456799999999999999999

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=99.31  E-value=7e-12  Score=89.90  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=32.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRA   58 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~   58 (215)
                      +|+|.|+|||||||+|+.|++.+ +..+++.|+++..
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~   37 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP   37 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence            58999999999999999999999 6889999888764

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.28  E-value=1.1e-10  Score=99.25  Aligned_cols=162  Identities=19%  Similarity=0.197  Sum_probs=91.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHH--HHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL--LQK   91 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   91 (215)
                      .++.+|+++|.|||||||+|+.|+++++     +.+++.|+ ++..+..+......-.          ......+  +..
T Consensus       458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~~~~~~~~r----------~~~~~~l~~~a~  526 (632)
T PRK05506        458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRDLGFSDADR----------VENIRRVAEVAR  526 (632)
T ss_pred             CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCCCCCCHHHH----------HHHHHHHHHHHH
Confidence            4689999999999999999999999973     46677755 5544332211111100          0011111  112


Q ss_pred             HHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHH
Q 028025           92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV  171 (215)
Q Consensus        92 ~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (215)
                      .+. ..+..+++|........+..+..+....+..++||+++.+.+.+|. .|  +.....   -...+..+.....   
T Consensus       527 ~~~-~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~-~r--~L~~~~---~~~~l~~l~~~r~---  596 (632)
T PRK05506        527 LMA-DAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD-PK--GLYAKA---RAGEIKNFTGIDS---  596 (632)
T ss_pred             HHH-hCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC-Cc--chhhhc---ccccccccccccc---
Confidence            222 2278899997544455555555421112447999999999999994 23  111000   0011111111111   


Q ss_pred             HHHHh-cCcEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025          172 QYYEA-KGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       172 ~~~~~-~~~~~~id~-~~~~~e~~~~i~~~l~~  202 (215)
                       .|.. ....+++|+ +.++++++++|...+..
T Consensus       597 -~y~~P~~a~~~Id~~~~s~~e~v~~Ii~~l~~  628 (632)
T PRK05506        597 -PYEAPENPELRLDTTGRSPEELAEQVLELLRR  628 (632)
T ss_pred             -CCCCCCCCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence             1332 223466766 77999999999988854

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.28  E-value=2.3e-10  Score=79.60  Aligned_cols=109  Identities=20%  Similarity=0.216  Sum_probs=65.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh---CC--eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHH--HHHHHHc
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL--LQKAMEE   95 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~---~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   95 (215)
                      +|+|+|.|||||||+|+.|++.+   +.  .+++. |.++..+.....+...        .  ..+....+  +...+..
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~~--------~--~~~~~~~~~~~a~~l~~   69 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSRE--------D--REENIRRIAEVAKLLAD   69 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCcc--------h--HHHHHHHHHHHHHHHHh
Confidence            47899999999999999999998   53  44544 4455443322111100        0  00111111  1122222


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhh
Q 028025           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (215)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~  143 (215)
                       .+..+|+|........+..+..+....+..++|+++|.+++.+|..+
T Consensus        70 -~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          70 -AGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             -CCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence             37889999765555555555553223455689999999999999654

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PLN02772 guanylate kinase

Probab=99.28  E-value=1.6e-10  Score=90.79  Aligned_cols=169  Identities=20%  Similarity=0.296  Sum_probs=99.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHc---C----CCcHHHHHHHHHcCCCCCHHH-------
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---G----SENGTMIQNMIKEGKIVPSEV-------   84 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~-------   84 (215)
                      +.+.|+|+||+||||+||++.|.+.+.. ..+......|.....   +    ....+.+......+.++....       
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG  213 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG  213 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence            5678999999999999999999887631 112222233322111   0    011144555555555543221       


Q ss_pred             -HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028025           85 -TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF  163 (215)
Q Consensus        85 -~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~  163 (215)
                       -.+.++..+.+  ++.+|+|   ........+.. ....+-.++++..+.+++.+|+..|  +.  +..+.+.+|+..+
T Consensus       214 Tsk~~V~~vl~~--Gk~vILd---LD~qGar~Lr~-~~l~~v~IFI~PPSlEeLe~RL~~R--Gt--eseE~I~kRL~~A  283 (398)
T PLN02772        214 TSIEAVEVVTDS--GKRCILD---IDVQGARSVRA-SSLEAIFIFICPPSMEELEKRLRAR--GT--ETEEQIQKRLRNA  283 (398)
T ss_pred             ccHHHHHHHHHh--CCcEEEe---CCHHHHHHHHH-hcCCeEEEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHHHH
Confidence             14556666554  7888888   44455555555 4444433444455689999999987  43  3567888998876


Q ss_pred             hhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      ......  ..+......+++|+  ++++.++++.++|..
T Consensus       284 ~~Ei~~--~~~~~~fD~vIvND--dLe~A~~~L~~iL~~  318 (398)
T PLN02772        284 EAELEQ--GKSSGIFDHILYND--NLEECYKNLKKLLGL  318 (398)
T ss_pred             HHHHhh--ccccCCCCEEEECC--CHHHHHHHHHHHHhh
Confidence            432110  00111223455543  889999999888753

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=99.27  E-value=5.2e-10  Score=76.41  Aligned_cols=165  Identities=17%  Similarity=0.196  Sum_probs=99.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC----CeEeeHHHHHHHHHHcC----CCcHHHHHHHHHcCCCCCHHHH------
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSG----SENGTMIQNMIKEGKIVPSEVT------   85 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~----~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~------   85 (215)
                      +..+|++.||+|+||-|+.......+.    +.++.. -+.|..-..+    .-....+...-..+-+.-....      
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrR-vITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Yg   82 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRR-VITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYG   82 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEE-EecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCcccc
Confidence            567899999999999999999988884    222221 1122111110    0111112221111111000000      


Q ss_pred             -HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHh
Q 028025           86 -IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFL  164 (215)
Q Consensus        86 -~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~  164 (215)
                       -..+...+..  |..+++.|.-....+   ... .+. --+++.+.++++++.+|+..|  ||  ++.+++..|+..-.
T Consensus        83 ip~eId~wl~~--G~vvl~NgSRa~Lp~---arr-ry~-~Llvv~ita~p~VLaqRL~~R--GR--Es~eeI~aRL~R~a  151 (192)
T COG3709          83 IPAEIDLWLAA--GDVVLVNGSRAVLPQ---ARR-RYP-QLLVVCITASPEVLAQRLAER--GR--ESREEILARLARAA  151 (192)
T ss_pred             CchhHHHHHhC--CCEEEEeccHhhhHH---HHH-hhh-cceeEEEecCHHHHHHHHHHh--cc--CCHHHHHHHHHhhc
Confidence             1123333333  889999875332222   222 333 235899999999999999988  65  66888988877643


Q ss_pred             hcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          165 ESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      ..       -...+.++.||+++.++..-+.....+...
T Consensus       152 ~~-------~~~~~dv~~idNsG~l~~ag~~ll~~l~~~  183 (192)
T COG3709         152 RY-------TAGPGDVTTIDNSGELEDAGERLLALLHQD  183 (192)
T ss_pred             cc-------ccCCCCeEEEcCCCcHHHHHHHHHHHHHhh
Confidence            32       123567999999999999999988888744

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=99.27  E-value=2e-11  Score=89.23  Aligned_cols=118  Identities=21%  Similarity=0.338  Sum_probs=64.5

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh---CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCC-------HHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP-------SEVTI   86 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~   86 (215)
                      +..+|.++++.|+|||||||++..+.+.+   ++.+++.|++ +...    +....+...  ......       ..+..
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~----p~~~~~~~~--~~~~~~~~~~~~a~~~~~   83 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFH----PDYDELLKA--DPDEASELTQKEASRLAE   83 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGS----TTHHHHHHH--HCCCTHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhc----cchhhhhhh--hhhhhHHHHHHHHHHHHH
Confidence            44689999999999999999999999987   6888988764 3221    111111111  001110       11223


Q ss_pred             HHHHHHHHccCCCeEEEeCCCCCHHHHH-HHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           87 KLLQKAMEESGNDKFLIDGFPRNEENRA-AFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        87 ~~~~~~~~~~~~~~~iidg~~~~~~~~~-~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      .+++..+..  +..+++|+......... .+..+  .+... .++++.++++....|...|
T Consensus        84 ~~~~~a~~~--~~nii~E~tl~~~~~~~~~~~~~k~~GY~v-~l~~v~~~~e~s~~rv~~R  141 (199)
T PF06414_consen   84 KLIEYAIEN--RYNIIFEGTLSNPSKLRKLIREAKAAGYKV-ELYYVAVPPELSIERVRQR  141 (199)
T ss_dssp             HHHHHHHHC--T--EEEE--TTSSHHHHHHHHHHHCTT-EE-EEEEE---HHHHHHHHHHH
T ss_pred             HHHHHHHHc--CCCEEEecCCCChhHHHHHHHHHHcCCceE-EEEEEECCHHHHHHHHHHH
Confidence            344444443  78999999776555444 22222  34443 4788899999999999999

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=99.27  E-value=1.3e-10  Score=83.81  Aligned_cols=164  Identities=20%  Similarity=0.333  Sum_probs=95.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHc---CCC----cHHHHHHHHHcCCCCCHH--------
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSE--------   83 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~--------   83 (215)
                      ++..|+|+||+|||||||++.|.+.++- .........|.....   +..    ..+.+......+.++...        
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG   80 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG   80 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence            3568999999999999999999998752 111111112221110   111    123344444444332211        


Q ss_pred             HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecC-HHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028025           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFKV  162 (215)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~-~e~~~~R~~~r~~~~~~~~~~~~~~~~~~  162 (215)
                      .....+...+..  +..+++|.   +...+..+.. ....| ++||+.++ .+.+.+|+..|    ..+..+.+..|+..
T Consensus        81 t~~~~i~~~~~~--gk~~il~~---~~~g~~~L~~-~~~~~-~~IfI~~~s~~~l~~~l~~r----~~~~~~~i~~r~~~  149 (183)
T PF00625_consen   81 TSKSAIDKVLEE--GKHCILDV---DPEGVKQLKK-AGFNP-IVIFIKPPSPEVLKRRLRRR----GDESEEEIEERLER  149 (183)
T ss_dssp             EEHHHHHHHHHT--TTEEEEEE---THHHHHHHHH-CTTTE-EEEEEEESSHHHHHHHHHTT----THCHHHHHHHHHHH
T ss_pred             hccchhhHhhhc--CCcEEEEc---cHHHHHHHHh-cccCc-eEEEEEccchHHHHHHHhcc----ccccHHHHHHHHHH
Confidence            114555555554  78888883   3566677776 66666 47888765 67788887766    33456677777766


Q ss_pred             HhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      .......    +.. -..++. ++ ++++++++|.++|+
T Consensus       150 ~~~~~~~----~~~-fd~vi~-n~-~le~~~~~l~~ii~  181 (183)
T PF00625_consen  150 AEKEFEH----YNE-FDYVIV-ND-DLEEAVKELKEIIE  181 (183)
T ss_dssp             HHHHHGG----GGG-SSEEEE-CS-SHHHHHHHHHHHHH
T ss_pred             HHHHHhH----hhc-CCEEEE-Cc-CHHHHHHHHHHHHH
Confidence            5543222    222 234444 33 89999999998874

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=99.27  E-value=1.2e-10  Score=82.23  Aligned_cols=176  Identities=16%  Similarity=0.191  Sum_probs=96.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHHHHHcCC----CcH-------------HHHHHHHHcCCCC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGS----ENG-------------TMIQNMIKEGKIV   80 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~~~~~~~----~~~-------------~~~~~~~~~~~~~   80 (215)
                      .+..+|.|.|.+.|||||||+.|...| |..+|+.||++...-.-..    ...             +.+...+......
T Consensus         2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~   81 (225)
T KOG3308|consen    2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNA   81 (225)
T ss_pred             ceEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCcccc
Confidence            355789999999999999999999998 5789999998764432211    011             1111222222222


Q ss_pred             CHHHHHHHHHH--------H--HHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCC
Q 028025           81 PSEVTIKLLQK--------A--MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRED  150 (215)
Q Consensus        81 ~~~~~~~~~~~--------~--~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~  150 (215)
                      +. ....++..        +  ........+++|||....  ...    ....+|..|.+..+-+++.+|...|..-.+.
T Consensus        82 ~~-ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~--y~p----~~~~~d~~im~~~~y~~~krRr~~Rt~y~p~  154 (225)
T KOG3308|consen   82 PE-AREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYN--YKP----QVDLFDRIIMLTLDYETCKRRREARTYYPPD  154 (225)
T ss_pred             ch-HhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEe--cch----hhhhhhhheeeeccHHHHHHhhcccccCCCC
Confidence            21 11111111        1  111226789999976221  111    1123556899999999999999988111111


Q ss_pred             Cc---HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025          151 DN---VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK  206 (215)
Q Consensus       151 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~  206 (215)
                      +.   ...++.++..+...    .+ +........+|++.+-+.+-..|...+......
T Consensus       155 ~tgyfd~~~~P~Y~~~~~~----~~-d~~~h~~~flngdvs~e~~~~~v~~~i~~~~~~  208 (225)
T KOG3308|consen  155 DTGYFDPVVWPHYEKNFEE----AR-DRSRHDSLFLNGDVSEEKLDDKVNESINQRQQI  208 (225)
T ss_pred             CCccccCccchHHHHHHHH----HH-hhcccceeeecccchhhhchhhhhhhhcccccc
Confidence            11   11112222222111    00 122224678888888888888887777544433

>PRK15453 phosphoribulokinase; Provisional

Probab=99.24  E-value=4.8e-11  Score=89.82  Aligned_cols=39  Identities=21%  Similarity=0.294  Sum_probs=33.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR   57 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~   57 (215)
                      .++++|+|+|.|||||||+++.|++.++     ..+++.|++++
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            5678999999999999999999999884     46677777664

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=99.24  E-value=5.1e-11  Score=88.15  Aligned_cols=121  Identities=16%  Similarity=0.255  Sum_probs=63.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHHHHHHHH---------cCCCc---HHHHHHHH---HcC-CC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIK---------SGSEN---GTMIQNMI---KEG-KI   79 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~~~~~~~---------~~~~~---~~~~~~~~---~~~-~~   79 (215)
                      +|.|.|++||||||+|+.|+..+.       ..+++.|+++.....         .+.+.   .+.+.+.+   ..+ ..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~   80 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN   80 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence            588999999999999999999883       356777776532210         01100   01111111   111 11


Q ss_pred             CCHHHH----HHHHHHHHH-ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           80 VPSEVT----IKLLQKAME-ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        80 ~~~~~~----~~~~~~~~~-~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      +.....    ......... ..+..++|+||..........|.. .....|+.|||++|.+++.+|+.+|
T Consensus        81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~-l~~~~D~~ifvd~~~~~~~~rl~~R  149 (220)
T cd02025          81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLF-VSDFFDFSIYVDADEDDIEKWYIKR  149 (220)
T ss_pred             EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhh-HHHhCCeEEEEECCHHHHHHHHHHH
Confidence            100000    000000010 112568999995322221111222 2234678999999999987777766

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PHA03132 thymidine kinase; Provisional

Probab=99.24  E-value=3e-10  Score=93.55  Aligned_cols=27  Identities=26%  Similarity=0.329  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      .++|+|+|+.||||||+++.|++.++.
T Consensus       257 ~~fIv~EGidGsGKTTlik~L~e~lg~  283 (580)
T PHA03132        257 ACFLFLEGVMGVGKTTLLNHMRGILGD  283 (580)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            688999999999999999999999843

>PRK07429 phosphoribulokinase; Provisional

Probab=99.23  E-value=2e-10  Score=89.45  Aligned_cols=139  Identities=16%  Similarity=0.227  Sum_probs=74.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHH---HHH-cCC-Cc------HHHHH---HHHHcCCCC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRA---EIK-SGS-EN------GTMIQ---NMIKEGKIV   80 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~---~~~-~~~-~~------~~~~~---~~~~~~~~~   80 (215)
                      +.++.+|.|+|++||||||+++.|++.++   ..+++.|+++..   ... .+. ..      .+.+.   ..+..++.+
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I   84 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI   84 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence            45789999999999999999999999987   567788776421   000 000 00      00000   111122111


Q ss_pred             CHHHHHH---HHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHH
Q 028025           81 PSEVTIK---LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR  157 (215)
Q Consensus        81 ~~~~~~~---~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~  157 (215)
                      .......   .........+...+|+||.....+.  .+    ...+|+.|||+++.++...|..+|...+.+...+.+.
T Consensus        85 ~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l~~~--~l----r~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~  158 (327)
T PRK07429         85 LKPIYNHETGTFDPPEYIEPNKIVVVEGLHPLYDE--RV----RELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVL  158 (327)
T ss_pred             ecceeecCCCCcCCcEecCCCcEEEEechhhcCcH--hH----HhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHH
Confidence            1000000   0000000112568899995311111  11    1246889999999999988877762122233456666


Q ss_pred             HHHHH
Q 028025          158 KRFKV  162 (215)
Q Consensus       158 ~~~~~  162 (215)
                      +++..
T Consensus       159 ~~i~~  163 (327)
T PRK07429        159 AEIEA  163 (327)
T ss_pred             HHHHH
Confidence            66544

>COG4639 Predicted kinase [General function prediction only]

Probab=99.23  E-value=5.3e-10  Score=75.97  Aligned_cols=114  Identities=19%  Similarity=0.154  Sum_probs=72.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (215)
                      +.++++.|+|||||||+|+..  .....+++.+++-+.. ..  ..+....   .......-+.....++..+.+  |..
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~l-g~--~~~~e~s---qk~~~~~~~~l~~~l~qrl~~--Gk~   71 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLL-GV--SASKENS---QKNDELVWDILYKQLEQRLRR--GKF   71 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHh-hh--chhhhhc---cccHHHHHHHHHHHHHHHHHc--CCe
Confidence            468999999999999999953  2357788887754432 10  0000000   000000112224445555554  899


Q ss_pred             EEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025          101 FLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      .|+|++....+.+..+..+  .+......|+++.|.+.|.+|.+.|
T Consensus        72 tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~  117 (168)
T COG4639          72 TIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR  117 (168)
T ss_pred             EEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence            9999988766666665554  4555556899999999999998755

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=99.23  E-value=1.1e-10  Score=87.08  Aligned_cols=133  Identities=15%  Similarity=0.179  Sum_probs=73.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCC-----eE-eeHHHHHHHHH--Hc-CCCcHHHHHHHHHcCCCCCHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-----TH-LSAGDLLRAEI--KS-GSENGTMIQNMIKEGKIVPSEVTIKL   88 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~-----~~-i~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (215)
                      ..++.+|+|.|++||||||+++.|+..+..     .+ ++.|+++....  .. +...      ................
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~------~~~~~~~~d~~~~~~~  103 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRP------RKGAPETFDVAGLAAL  103 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhccccc------ccCCCCCCCHHHHHHH
Confidence            357899999999999999999999998852     23 55555432210  00 0000      0000000111111111


Q ss_pred             HHHHH-------------------H----c-cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           89 LQKAM-------------------E----E-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        89 ~~~~~-------------------~----~-~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      +....                   .    . .....+|+||....... ..|.. ....+|.+|||++|.+++.+|+..|
T Consensus       104 l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~-~~~~~-l~~~~D~vi~v~~~~~~~~~R~~~R  181 (229)
T PRK09270        104 LRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDE-EPWRR-LAGLFDFTIFLDAPAEVLRERLVAR  181 (229)
T ss_pred             HHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeecc-ccHHH-HHhhCCEEEEEECCHHHHHHHHHHH
Confidence            11110                   0    0 02457888986543221 12222 2335789999999999999999988


Q ss_pred             --cCCCCCCcHHHHHHHHH
Q 028025          145 --NQGREDDNVETIRKRFK  161 (215)
Q Consensus       145 --~~~~~~~~~~~~~~~~~  161 (215)
                        ..+.   ..+++.+++.
T Consensus       182 ~~~~g~---s~~~~~~~~~  197 (229)
T PRK09270        182 KLAGGL---SPEAAEAFVL  197 (229)
T ss_pred             HHhcCC---CHHHHHHHHH
Confidence              2333   3456666654

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=99.23  E-value=1e-09  Score=77.19  Aligned_cols=69  Identities=17%  Similarity=0.155  Sum_probs=40.7

Q ss_pred             CCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH--hcCcEEEEcCCCCHH
Q 028025          121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE--AKGKVRKIDAAKPVA  190 (215)
Q Consensus       121 ~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~id~~~~~~  190 (215)
                      ...+|.+|||.++|++|.+|+..|.+......+....+.++..++.|-- ...+.  ..-+++++|++...|
T Consensus       151 ~v~~dgiIYLrasPetc~~Ri~~R~R~EE~gipL~YLe~LH~~HE~WLi-~~~f~~lq~vpvLVLDad~n~d  221 (244)
T KOG4235|consen  151 DVSLDGIIYLRASPETCYKRIYLRAREEEKGIPLKYLEALHELHESWLI-KLHFPNLQAVPVLVLDADHNMD  221 (244)
T ss_pred             ccccceEEEeecChHHHHHHHHHHhhhhhcCCcHHHHHHHHHHHHHHHH-HHhhhHhhcCCeEEEecccchh
Confidence            3678999999999999999999982111111222223333333333221 22233  345789999866544

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=99.22  E-value=2.7e-11  Score=86.84  Aligned_cols=37  Identities=30%  Similarity=0.379  Sum_probs=32.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh-----CCeEeeHHHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAE   59 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~~~~~~~   59 (215)
                      +|+|.|+|||||||+|+.|++.+     +..+++.|++++..
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~   42 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR   42 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc
Confidence            58999999999999999999997     46789999988743

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.22  E-value=2.3e-10  Score=89.11  Aligned_cols=120  Identities=16%  Similarity=0.153  Sum_probs=70.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC------CeEeeHHHHHHHHHHc---CCCcH-------HHHHH-------HHHcCCC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKS---GSENG-------TMIQN-------MIKEGKI   79 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~------~~~i~~~~~~~~~~~~---~~~~~-------~~~~~-------~~~~~~~   79 (215)
                      +.+++|+|||||||+++.|++.+.      ..+++.||++.+....   +....       ..+..       .+..|..
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~   80 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE   80 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            368999999999999999998875      3588999988422211   11111       11111       1111211


Q ss_pred             CCH------HHH------------------------HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEE
Q 028025           80 VPS------EVT------------------------IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFV  127 (215)
Q Consensus        80 ~~~------~~~------------------------~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~  127 (215)
                      ...      ...                        ..+....+.  ....+|+|+.......+..+..+  ....+...
T Consensus        81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~Ls--rpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~  158 (340)
T TIGR03575        81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVS--RPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQ  158 (340)
T ss_pred             ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHh--CCCCceecCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence            111      111                        111111111  14568999866665555555544  33445579


Q ss_pred             EEEecCHHHHHHHHhhc
Q 028025          128 LFFDCSEEEMERRILNR  144 (215)
Q Consensus       128 i~L~~~~e~~~~R~~~r  144 (215)
                      ||+++|.+++.+|+.+|
T Consensus       159 V~ld~ple~~l~RN~~R  175 (340)
T TIGR03575       159 LFLDCPVESCLLRNKQR  175 (340)
T ss_pred             EEEeCCHHHHHHHHhcC
Confidence            99999999999999988

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=99.20  E-value=2.2e-09  Score=78.97  Aligned_cols=149  Identities=21%  Similarity=0.292  Sum_probs=90.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH-c--cCC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-E--SGN   98 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~   98 (215)
                      .+|+|+|.+|||||+-++.| +.+||..+                           .++|..+.-.+++-... +  ...
T Consensus         2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycv---------------------------DNLPp~Llp~~~~~~~~~~~~~~k   53 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVL-EDLGYYCV---------------------------DNLPPQLLPKLADLMLTLESRITK   53 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHH-HhcCeeee---------------------------cCCCHHHHHHHHHHHhhcccCCce
Confidence            47999999999999999999 87898766                           33444444444431111 1  124


Q ss_pred             CeEEEeCCCC----C-HHHHHHHHHhcC-CCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHH
Q 028025           99 DKFLIDGFPR----N-EENRAAFEAVTK-IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ  172 (215)
Q Consensus        99 ~~~iidg~~~----~-~~~~~~~~~~~~-~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (215)
                      -.+++|-...    . .+....+.. .. ..+ .++||+++.+++.+|...-.+..+-.....+...+...++...|+  
T Consensus        54 vAv~iDiRs~~~~~~l~~~l~~l~~-~~~~~~-~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pL--  129 (286)
T COG1660          54 VAVVIDVRSREFFGDLEEVLDELKD-NGDIDP-RVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPL--  129 (286)
T ss_pred             EEEEEecccchhHHHHHHHHHHHHh-cCCCCc-eEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHH--
Confidence            5677884211    1 122233332 32 223 399999999999999985411111111112455555555544444  


Q ss_pred             HHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025          173 YYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (215)
Q Consensus       173 ~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~  204 (215)
                        .+...+++..++.++.++.+.|...+....
T Consensus       130 --k~~A~~vIDTs~ls~~~Lr~~i~~~f~~~~  159 (286)
T COG1660         130 --REIADLVIDTSELSVHELRERIRTRFLGKE  159 (286)
T ss_pred             --HHHhhhEeecccCCHHHHHHHHHHHHccCC
Confidence              444445555568899999999999998643

>PRK05439 pantothenate kinase; Provisional

Probab=99.19  E-value=9.3e-11  Score=90.23  Aligned_cols=127  Identities=15%  Similarity=0.221  Sum_probs=69.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHHHHHHHH---------cCCCcH---HHHHH---HH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIK---------SGSENG---TMIQN---MI   74 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~~~~~~~---------~~~~~~---~~~~~---~~   74 (215)
                      ..++|.+|+|+|+|||||||+|+.|++.++       ..+++.|+++.....         .+.+..   +.+.+   .+
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~L  161 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDV  161 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHH
Confidence            456789999999999999999999998664       457788887643211         011100   11111   11


Q ss_pred             HcCCC-CCH----HHHHHHHHHH-HHccCCCeEEEeCCCCC-HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           75 KEGKI-VPS----EVTIKLLQKA-MEESGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        75 ~~~~~-~~~----~~~~~~~~~~-~~~~~~~~~iidg~~~~-~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      ..|.. +..    ......+... ....+..++|+||.... ......+.. .....|+.|||+++.+++.+|+.+|
T Consensus       162 k~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~-l~d~~D~~IfVda~~~~~~~w~i~R  237 (311)
T PRK05439        162 KSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLF-VSDFFDFSIYVDADEDLIEKWYIER  237 (311)
T ss_pred             HcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchh-hHHhCCEEEEEECCHHHHHHHHHHH
Confidence            22211 100    0000001000 00112578899994422 111101111 2234688999999999999888777

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=99.18  E-value=2.2e-10  Score=84.11  Aligned_cols=153  Identities=18%  Similarity=0.257  Sum_probs=78.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH---HHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---IKLL   89 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~   89 (215)
                      ...+.+|++.|.||.|||++|++|+..|+     ..+++.|+.-|........ ...+.....++.....+..   .+-+
T Consensus         9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~-~~ff~p~n~~~~~~R~~~a~~~l~dl   87 (222)
T PF01591_consen    9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQD-AEFFDPDNEEAKKLREQIAKEALEDL   87 (222)
T ss_dssp             ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S--GGGGSTT-HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccc-cccCCCCChHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999995     4788899876665433111 1000000000000001111   1222


Q ss_pred             HHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec--CHHHHHHHHhhc-cC-------CCCCCcHHHHHHH
Q 028025           90 QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC--SEEEMERRILNR-NQ-------GREDDNVETIRKR  159 (215)
Q Consensus        90 ~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~--~~e~~~~R~~~r-~~-------~~~~~~~~~~~~~  159 (215)
                      ..-+...+|++.|+|+...+.+.+..+.+........++|+++  +.+.+.++.... ..       ..++...+++.+|
T Consensus        88 ~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~Df~~R  167 (222)
T PF01591_consen   88 IEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIEDFKKR  167 (222)
T ss_dssp             HHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHHHHHHH
T ss_pred             HHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHH
Confidence            2333434599999999988888777666641111134666666  555544444433 11       1223346788889


Q ss_pred             HHHHhhcchhHH
Q 028025          160 FKVFLESSLPVV  171 (215)
Q Consensus       160 ~~~~~~~~~~~~  171 (215)
                      ++.|.....++.
T Consensus       168 I~~Ye~~YEpl~  179 (222)
T PF01591_consen  168 IEHYEKVYEPLD  179 (222)
T ss_dssp             HHHHHTT-----
T ss_pred             HHhhcccccccc
Confidence            999988877774

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=99.11  E-value=1.1e-09  Score=83.82  Aligned_cols=126  Identities=18%  Similarity=0.308  Sum_probs=68.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHHHHHHH--Hc-------CCCcH---HHHHH---HHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEI--KS-------GSENG---TMIQN---MIK   75 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~~~~~~--~~-------~~~~~---~~~~~---~~~   75 (215)
                      +.+|.+|+|.|++||||||+++.|+..+.       ..+++.|+++....  ..       +.+..   ..+..   .+.
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk  138 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK  138 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence            46789999999999999999998877663       45567766553221  10       11100   11111   112


Q ss_pred             cCCC-C--C--HHHHHHHHHHHHH-ccCCCeEEEeCCCCCHH-H----HHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           76 EGKI-V--P--SEVTIKLLQKAME-ESGNDKFLIDGFPRNEE-N----RAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        76 ~~~~-~--~--~~~~~~~~~~~~~-~~~~~~~iidg~~~~~~-~----~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      .|.. +  |  +............ ..+..++|+||...-.. .    -..|.. ....+|+.|||++|.+++.+|+.+|
T Consensus       139 ~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~-~~d~~D~~IyvDa~~d~~~~w~i~R  217 (290)
T TIGR00554       139 SGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVF-VSDFVDFSIYVDAEEDLLQTWYINR  217 (290)
T ss_pred             CCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHH-HHHhCCEEEEEECCHHHHHHHHHHH
Confidence            2221 1  0  0000111111100 12367889999532211 0    011222 2245789999999999999888777

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.07  E-value=1.5e-09  Score=82.85  Aligned_cols=133  Identities=17%  Similarity=0.276  Sum_probs=67.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHH----cC-CCc------HHHH---HHHHHcCCCCCHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIK----SG-SEN------GTMI---QNMIKEGKIVPSEVT   85 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~----~~-~~~------~~~~---~~~~~~~~~~~~~~~   85 (215)
                      +|.|+|++||||||+++.|+..++   ..+++.|++......    .+ ...      ...+   ...+..++.+.....
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y   80 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY   80 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence            488999999999999999998874   557777766431000    00 000      0000   011122211111000


Q ss_pred             HHH---HHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028025           86 IKL---LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK  161 (215)
Q Consensus        86 ~~~---~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~  161 (215)
                      ...   +.......+...+|+||...-.+  ..+    ...+|+.|||+++.++..+|..+|...+.+...+.+.+++.
T Consensus        81 ~~~~~~~~~~~~i~~~~ivIvEG~~~l~~--~~l----~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~  153 (273)
T cd02026          81 NHVTGLIDPPELIKPTKIVVIEGLHPLYD--ERV----RELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIE  153 (273)
T ss_pred             cccCCCcCCcEEcCCCCEEEEeeehhhCc--hhh----hhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            000   00000001246889998531111  122    22467899999999999777666611112234556666654

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=99.07  E-value=6.8e-10  Score=66.74  Aligned_cols=60  Identities=20%  Similarity=0.450  Sum_probs=43.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh---CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (215)
                      +|+|+|+|||||||+++.|++.+   +..+++.                                               
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~-----------------------------------------------   33 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE-----------------------------------------------   33 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence            47899999999999999999985   3333321                                               


Q ss_pred             eEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec
Q 028025          100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC  132 (215)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~  132 (215)
                      .+|+||+......+.  .. ....+|..|||++
T Consensus        34 ~~I~eg~~~~~~~~~--~~-~~~~~d~~Iyld~   63 (69)
T cd02019          34 IVILEGLYASYKSRD--AR-IRDLADLKIYLDA   63 (69)
T ss_pred             EEEecchhhhhhhHH--hh-ccccccEEEEEEe
Confidence            799999764433322  22 5667889999986

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=99.05  E-value=1.5e-09  Score=89.22  Aligned_cols=146  Identities=14%  Similarity=0.189  Sum_probs=75.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC-CeEeeHHHHHHHHH--HcCCCcH-----HHH---HHHHHcCCCCCHHHH--
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEI--KSGSENG-----TMI---QNMIKEGKIVPSEVT--   85 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~-~~~i~~~~~~~~~~--~~~~~~~-----~~~---~~~~~~~~~~~~~~~--   85 (215)
                      ..+.+|.|.|++||||||+++.|+..++ ..+++.|++.....  .......     ..+   ...+..+..+.....  
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf  142 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDF  142 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCcccc
Confidence            3578999999999999999999999884 45677766532110  0000000     001   111222222111100  


Q ss_pred             --HHHHHH-HHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHH-HHHHHhhc--cCCCCCCcHHHHHHH
Q 028025           86 --IKLLQK-AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE-MERRILNR--NQGREDDNVETIRKR  159 (215)
Q Consensus        86 --~~~~~~-~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~-~~~R~~~r--~~~~~~~~~~~~~~~  159 (215)
                        ...... .....+..++|+||.....   ..+.    ...|+.||++++.+. +.+|+..+  .+|+   ..+.+.++
T Consensus       143 ~t~~r~~~~~i~v~p~~VVIVEGIyaL~---~~Lr----~LlDlkIFVDtdvDirL~RRI~RD~~eRGr---s~EsVi~q  212 (656)
T PLN02318        143 KSSSRVGYRTLEVPSSRIVIIEGIYALS---EKLR----PLLDLRVSVTGGVHFDLVKRVLRDIQRAGQ---EPEEIIHQ  212 (656)
T ss_pred             ccCcccCCceeecCCCcEEEEechhhcc---HhHH----hhCCEEEEEcCCccHHHHHHHHHHHHHhCC---CHHHHHHH
Confidence              000000 0111236789999965432   2222    345789999987666 44555544  3344   33444443


Q ss_pred             HHHHhhcchhHHHHHHhc
Q 028025          160 FKVFLESSLPVVQYYEAK  177 (215)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~  177 (215)
                         |.....|....|.++
T Consensus       213 ---~~~~VkP~y~~FIeP  227 (656)
T PLN02318        213 ---ISETVYPMYKAFIEP  227 (656)
T ss_pred             ---HHHhhcchHHHHhCc
Confidence               445555555555443

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.05  E-value=3.3e-09  Score=72.40  Aligned_cols=150  Identities=19%  Similarity=0.209  Sum_probs=87.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh--CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (215)
                      +.+-++.|+.||||||+-...--.+  ++.+++.|.+.... ....+....+    +.     .......+...+..  +
T Consensus         2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i-~p~~p~~~~i----~A-----~r~ai~~i~~~I~~--~   69 (187)
T COG4185           2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI-SPDNPTSAAI----QA-----ARVAIDRIARLIDL--G   69 (187)
T ss_pred             ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc-CCCCchHHHH----HH-----HHHHHHHHHHHHHc--C
Confidence            5677889999999999987644444  46788887765443 2222221111    11     11123334444433  7


Q ss_pred             CeEEEeCCCCCH---HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHhhcchhHHHHH
Q 028025           99 DKFLIDGFPRNE---ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESSLPVVQYY  174 (215)
Q Consensus        99 ~~~iidg~~~~~---~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (215)
                      ..+.++......   +..+.... .+....+.++.--+.|...+|++.| ..|.+....+.+..|+..   ....+...+
T Consensus        70 ~~F~~ETtLS~~s~~~~ik~Ak~-~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~r---sle~l~~~l  145 (187)
T COG4185          70 RPFIAETTLSGPSILELIKTAKA-AGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRR---SLELLAQAL  145 (187)
T ss_pred             CCcceEEeeccchHHHHHHHHHh-CCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH---HHHHHHHHH
Confidence            778777644333   33333333 4444444444445778899999999 777787878888887544   333333334


Q ss_pred             HhcCcEEEEcCC
Q 028025          175 EAKGKVRKIDAA  186 (215)
Q Consensus       175 ~~~~~~~~id~~  186 (215)
                      .-.+..++.|++
T Consensus       146 ~l~dr~~IydNS  157 (187)
T COG4185         146 TLADRATIYDNS  157 (187)
T ss_pred             hhcceeEEecCC
Confidence            444556777774

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.03  E-value=2.6e-09  Score=79.91  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR   57 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~   57 (215)
                      +|+|+|.+||||||+++.|++.++     ..+++.|++++
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            589999999999999999998874     46788877766

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PHA00729 NTP-binding motif containing protein

Probab=98.96  E-value=1.2e-08  Score=74.95  Aligned_cols=113  Identities=15%  Similarity=0.119  Sum_probs=63.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCe--EeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (215)
                      ......|+|+|+||+||||+|..|++.++..  .+..++....  ...            ...++..+.....+......
T Consensus        14 ~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d--~~~------------~~~fid~~~Ll~~L~~a~~~   79 (226)
T PHA00729         14 NNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQ--YVQ------------NSYFFELPDALEKIQDAIDN   79 (226)
T ss_pred             cCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHh--cCC------------cEEEEEHHHHHHHHHHHHhc
Confidence            3445679999999999999999999987521  1212111000  000            01122223333444433322


Q ss_pred             cC-CCeEEEeCCC---CCHHHH-------HHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           96 SG-NDKFLIDGFP---RNEENR-------AAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        96 ~~-~~~~iidg~~---~~~~~~-------~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      .. ...+|+|++.   ....+.       ..+..+....+++++++.++++.+..++.+|
T Consensus        80 ~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R  139 (226)
T PHA00729         80 DYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK  139 (226)
T ss_pred             CCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence            11 2467999722   111111       1122212235788999999999999999998

>PHA03136 thymidine kinase; Provisional

Probab=98.95  E-value=7.3e-08  Score=75.41  Aligned_cols=29  Identities=28%  Similarity=0.401  Sum_probs=24.5

Q ss_pred             cCCCCcEEEEEecCHHHHHHHHhhccCCCCC
Q 028025          120 TKIEPEFVLFFDCSEEEMERRILNRNQGRED  150 (215)
Q Consensus       120 ~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~  150 (215)
                      ..+.||.+|||+++++++.+|+.+|  +|+.
T Consensus       188 ~~p~pD~IIyL~l~~e~~~~RI~kR--gR~~  216 (378)
T PHA03136        188 DEPHGGNIVIMDLDECEHAERIIAR--GRPG  216 (378)
T ss_pred             CCCCCCEEEEEeCCHHHHHHHHHHc--CCCc
Confidence            3457899999999999999999999  4444

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=98.86  E-value=5.4e-09  Score=75.30  Aligned_cols=161  Identities=14%  Similarity=0.157  Sum_probs=79.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (215)
                      ++|+|+|.|+|||||.|..|.+.+.     ..+.-.+|-- .-+..+...++.-.+..-      .....+.+++.+.. 
T Consensus         2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des-lg~~~ns~y~~s~~EK~l------Rg~L~S~v~R~Lsk-   73 (281)
T KOG3062|consen    2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES-LGIEKNSNYGDSQAEKAL------RGKLRSAVDRSLSK-   73 (281)
T ss_pred             CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh-cCCCCcccccccHHHHHH------HHHHHHHHHhhccc-
Confidence            4799999999999999999999883     1222222211 000111111110000000      00113333333332 


Q ss_pred             CCCeEEEeCCCCCH---HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCC---CCCCcHHHHHHHHHHHhhcchh
Q 028025           97 GNDKFLIDGFPRNE---ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQG---REDDNVETIRKRFKVFLESSLP  169 (215)
Q Consensus        97 ~~~~~iidg~~~~~---~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~---~~~~~~~~~~~~~~~~~~~~~~  169 (215)
                       +..||+|.-....   .+.....+ .......+|+..+|.|.+.+....| ..+   -..+..+.+..|++.-....+ 
T Consensus        74 -~~iVI~DslNyIKGfRYeLyC~ak-~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~e~gy~~e~le~L~~RyEeP~s~NR-  150 (281)
T KOG3062|consen   74 -GDIVIVDSLNYIKGFRYELYCEAK-AARTTYCVVHTAVPQELCREWNSEREDPGEDGYDDELLEALVQRYEEPNSRNR-  150 (281)
T ss_pred             -CcEEEEecccccccceeeeeeehh-ccceeEEEEEecCCHHHHHHhcccCCCCCCCCCCHHHHHHHHHHhhCCCcccc-
Confidence             8899999632211   11122222 2223445899999999999999888 222   222333444444443322222 


Q ss_pred             HHHHHHhcC-cEEEEcCCCCHHHHHHHHH
Q 028025          170 VVQYYEAKG-KVRKIDAAKPVAEVFDAVK  197 (215)
Q Consensus       170 ~~~~~~~~~-~~~~id~~~~~~e~~~~i~  197 (215)
                          |+.+= -++-.+.+.+.+.+++.+.
T Consensus       151 ----WDsPLf~ll~~~~~~~~~~I~~al~  175 (281)
T KOG3062|consen  151 ----WDSPLFTLLPDVITLPIDDILKALF  175 (281)
T ss_pred             ----ccCcceEEecccCCCcHHHHHHHHh
Confidence                22221 1112233667777766654

>PLN02165 adenylate isopentenyltransferase

Probab=98.85  E-value=1.9e-08  Score=77.87  Aligned_cols=37  Identities=24%  Similarity=0.471  Sum_probs=33.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~   55 (215)
                      .++.+|+|.||+||||||++..|++.++..+++.|.+
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            3567999999999999999999999999999998776

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=98.85  E-value=1.9e-08  Score=68.12  Aligned_cols=171  Identities=17%  Similarity=0.133  Sum_probs=88.8

Q ss_pred             ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHH
Q 028025           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL   88 (215)
Q Consensus        13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (215)
                      .+.+...+..+|+|+|.+||||||+|=+|.+.+.    ..++--+|-+|.-+...-.+.+.-        ...+-....-
T Consensus        23 Rq~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~d--------R~ENIRRige   94 (207)
T KOG0635|consen   23 RQKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAED--------RNENIRRIGE   94 (207)
T ss_pred             HHHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhh--------hhhhHHHHHH
Confidence            4566677899999999999999999999988882    455545565665443322221100        0000011222


Q ss_pred             HHHHHHccCCCeEEEeCCCCC-HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcc
Q 028025           89 LQKAMEESGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESS  167 (215)
Q Consensus        89 ~~~~~~~~~~~~~iidg~~~~-~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~  167 (215)
                      +...+..  .-.+.+..+... +..+.....+....+.+-+|+++|.+++..|--+.      -....-...++.|-   
T Consensus        95 VaKLFAD--ag~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKG------LYK~ARaGkIKgFT---  163 (207)
T KOG0635|consen   95 VAKLFAD--AGVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKG------LYKLARAGKIKGFT---  163 (207)
T ss_pred             HHHHHhc--cceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchh------HHHHHhcccccccc---
Confidence            3333322  223333332222 12233333322223456899999999999884321      10100011112222   


Q ss_pred             hhHHHHHHhc-CcEEEEc--CCCCHHHHHHHHHHhhCCC
Q 028025          168 LPVVQYYEAK-GKVRKID--AAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       168 ~~~~~~~~~~-~~~~~id--~~~~~~e~~~~i~~~l~~~  203 (215)
                       .+...|+.+ +.-+++.  ...++++..+.|..++.+.
T Consensus       164 -GIddPYEaP~~cEi~l~~~~~~sp~~mae~iv~YL~~k  201 (207)
T KOG0635|consen  164 -GIDDPYEAPLNCEIVLKSHESSSPEEMAEIIVSYLDNK  201 (207)
T ss_pred             -cCCCcccCCCCcEEEEccCCCCCHHHHHHHHHHHHhhc
Confidence             223334433 2233333  3556777999999888754

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=98.80  E-value=9.6e-09  Score=76.54  Aligned_cols=126  Identities=17%  Similarity=0.256  Sum_probs=69.8

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHHHH-------HHHHc--CCCcH---HHH---HHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLR-------AEIKS--GSENG---TMI---QNMI   74 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~~~-------~~~~~--~~~~~---~~~---~~~~   74 (215)
                      ....|++|+|.|++|+||||+|+.|+..+.       ...+..|-+..       .-+-.  |.+..   ..+   ...+
T Consensus        78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~v  157 (283)
T COG1072          78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDV  157 (283)
T ss_pred             CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHH
Confidence            456799999999999999999999988774       12222222211       11100  21111   111   1222


Q ss_pred             HcCCC-CC----HHHHHHHHHHHHHcc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           75 KEGKI-VP----SEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        75 ~~~~~-~~----~~~~~~~~~~~~~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      +.+.. +.    +......+.....-. ..+.+|++|...-.... .|.. ...-+|+.||++++.+.+.+|+.+|
T Consensus       158 K~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~-p~~~-~sdffDfSIyvDa~~~~le~wyi~R  231 (283)
T COG1072         158 KAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGE-PWLF-LSDFFDFSIYVDADEELLEERYIER  231 (283)
T ss_pred             hcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCC-cccc-ccccceEEEEecCCHHHHHHHHHHH
Confidence            22222 11    111122221221111 26788999854322221 2222 4556899999999999999999998

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=98.72  E-value=7.4e-07  Score=61.72  Aligned_cols=73  Identities=16%  Similarity=0.263  Sum_probs=49.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhC-CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEE
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (215)
                      |+=.+.+||||||++.+|++-|| |.++..|++..                    +  ....+...+-+.+......+|+
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~--------------------k--~~~~f~~~~l~~L~~~~~~vVi   59 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNITG--------------------K--RKPKFIKAVLELLAKDTHPVVI   59 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCC--------------------C--CHHHHHHHHHHHHhhCCCCEEE
Confidence            55578999999999999999999 99998877411                    1  1111233333444334488999


Q ss_pred             EeCCCCCHHHHHHHHH
Q 028025          103 IDGFPRNEENRAAFEA  118 (215)
Q Consensus       103 idg~~~~~~~~~~~~~  118 (215)
                      .|........+..+..
T Consensus        60 aDRNNh~~reR~ql~~   75 (168)
T PF08303_consen   60 ADRNNHQKRERKQLFE   75 (168)
T ss_pred             EeCCCchHHHHHHHHH
Confidence            9987766665555443

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=98.71  E-value=1.3e-07  Score=67.91  Aligned_cols=114  Identities=15%  Similarity=0.201  Sum_probs=58.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCC-C------cHHHHH--HH---HHcC-------CCCCHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS-E------NGTMIQ--NM---IKEG-------KIVPSE   83 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~-~------~~~~~~--~~---~~~~-------~~~~~~   83 (215)
                      +|.|.|..|||++|+|+.||+++|+.+++. +++........ .      ..+...  ..   +..+       ......
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD   79 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence            689999999999999999999999999998 66655443311 0      111111  11   1111       111112


Q ss_pred             HHHHHHHHHHHccC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           84 VTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        84 ~~~~~~~~~~~~~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      .......+.+.... ..++|+.|..     ...+.  ......+.|+|.+|.+...+|+.++
T Consensus        80 ~~~~~~~~~i~~la~~~~~Vi~GR~-----a~~il--~~~~~~l~V~i~A~~~~Rv~ri~~~  134 (179)
T PF13189_consen   80 KIFRAQSEIIRELAAKGNCVIVGRC-----ANYIL--RDIPNVLHVFIYAPLEFRVERIMER  134 (179)
T ss_dssp             HHHHHHHHHHHHHHH---EEEESTT-----HHHHT--TT-TTEEEEEEEE-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCEEEEecC-----Hhhhh--CCCCCeEEEEEECCHHHHHHHHHHH
Confidence            22222222222211 3466666643     12222  3333457999999999999999987

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=98.66  E-value=5.2e-08  Score=68.93  Aligned_cols=37  Identities=27%  Similarity=0.532  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS   62 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~   62 (215)
                      .|+|+|++|+|||||++.|++. |+.++  .+..+..+..
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~~   37 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIEE   37 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHHH
Confidence            4899999999999999999998 88877  4656665544

>PRK06761 hypothetical protein; Provisional

Probab=98.60  E-value=2.7e-06  Score=64.93  Aligned_cols=28  Identities=21%  Similarity=0.393  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      .++|+|+|+|||||||+++.|++.++..
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~   30 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQN   30 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence            4689999999999999999999999743

>PHA03135 thymidine kinase; Provisional

Probab=98.59  E-value=2.4e-06  Score=66.15  Aligned_cols=27  Identities=22%  Similarity=0.290  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+-.+|+|.|+.|+||||+++.|++..
T Consensus         8 ~~~~rIYlDG~~GvGKTT~~~~l~~~~   34 (343)
T PHA03135          8 AQLIRVYLDGPFGIGKTSMLNEMPDHS   34 (343)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence            556789999999999999999998853

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=98.58  E-value=2e-07  Score=63.92  Aligned_cols=24  Identities=29%  Similarity=0.569  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +|+|.||+||||||+++.|++.+.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCC
Confidence            478999999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.55  E-value=9.3e-07  Score=75.85  Aligned_cols=31  Identities=29%  Similarity=0.484  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      +..+|++.|.||+||||+++.|++.+++..+
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~  244 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGL  244 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCC
Confidence            4668999999999999999999999965433

>PHA03134 thymidine kinase; Provisional

Probab=98.53  E-value=2.1e-05  Score=60.99  Aligned_cols=133  Identities=17%  Similarity=0.178  Sum_probs=69.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh--C--CeEeeH----------HHHHHHHHHc------CCCcHH---HHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF--G--YTHLSA----------GDLLRAEIKS------GSENGT---MIQNMI   74 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~--~--~~~i~~----------~~~~~~~~~~------~~~~~~---~~~~~~   74 (215)
                      +.+-.+|+|.|+.|.||||+++.|+..-  +  ..++..          .|.+.....-      +.-...   .+....
T Consensus        10 ~~~~~rvYlDG~~GvGKTT~~~~l~~~~~~~~~vl~~pEPM~YWr~~f~~d~i~~Iy~~q~r~~~G~~s~~~aa~~~a~~   89 (340)
T PHA03134         10 QVRIVRIYLDGAYGIGKSTTGRVMASAASGGGPTLYFPEPMAYWRTLFETDVVSGIYDAQNRKQQGSLAAEDAAGITAHY   89 (340)
T ss_pred             cccEEEEEEeCCCcCCHHHHHHHHHHhccCCCceEEecCcHHHHHHHhhhhHHHHHHHHHhHHhccCcchhHHHHHHHHH
Confidence            3556789999999999999999997642  2  222221          1222222111      111000   111111


Q ss_pred             HcCCCCCHHHHHHHHHHHHHc-c------CCCeEEEeCCCCC----------------HHHHHHHHHhc-CCCC-cEEEE
Q 028025           75 KEGKIVPSEVTIKLLQKAMEE-S------GNDKFLIDGFPRN----------------EENRAAFEAVT-KIEP-EFVLF  129 (215)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~-~------~~~~~iidg~~~~----------------~~~~~~~~~~~-~~~~-~~~i~  129 (215)
                      +.....|.......+...+.. .      +...+|+|.+|..                ......+.... ...| +-+|+
T Consensus        90 Q~~fatP~~~~~~~~~~~~~~~~~~~~~~pd~~vI~DRHPlsA~vcFP~ar~~~G~ls~~~~~~l~~~~p~~~pG~niVl  169 (340)
T PHA03134         90 QARFATPYLILHDRLSTLFGPPSLARGGRPDVTLVFDRHPVASCVCFPLARYLLGDMSACALLALAATLPREPPGGNLVV  169 (340)
T ss_pred             HHHhcChHHHHHHHHHHhcCCCCCCCCCCCCeeeeeccCCCCccccchHHHHhcCCCCHHHHHHHHHhCCCCCCCCeEEE
Confidence            222223333333334433331 0      1467899987754                12222222101 1224 78999


Q ss_pred             EecCHHHHHHHHhhccCCCCCCc
Q 028025          130 FDCSEEEMERRILNRNQGREDDN  152 (215)
Q Consensus       130 L~~~~e~~~~R~~~r~~~~~~~~  152 (215)
                      ++.++++..+|+.+|  +|+.+.
T Consensus       170 ~~l~~~e~~~Rl~~R--~R~gE~  190 (340)
T PHA03134        170 TTLNPDEHLRRLRAR--ARIGEQ  190 (340)
T ss_pred             EeCCHHHHHHHHHHc--CCCccc
Confidence            999999999999999  555543

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.50  E-value=1.2e-07  Score=73.30  Aligned_cols=37  Identities=24%  Similarity=0.440  Sum_probs=33.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~   55 (215)
                      .++++|+|+||+||||||+|..|++.++..+++.|.+
T Consensus         2 ~~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          2 MKPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            3567999999999999999999999999999998773

>PHA03138 thymidine kinase; Provisional

Probab=98.49  E-value=2.9e-06  Score=65.67  Aligned_cols=26  Identities=23%  Similarity=0.327  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +-.+|+|.|+.|+||||+++.+.+.+
T Consensus        11 ~~~riYleG~~GvGKTT~~~~~l~~~   36 (340)
T PHA03138         11 CILRIYLDGAFGIGKTTAAEAFLHGF   36 (340)
T ss_pred             cEEEEEEECCCCcCHHhHHHHHHHhh
Confidence            45679999999999999998776654

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.43  E-value=2.9e-07  Score=62.46  Aligned_cols=28  Identities=25%  Similarity=0.643  Sum_probs=25.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      |+|.||||+||||+++.+++.++..++.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~   28 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIE   28 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhccccccc
Confidence            6899999999999999999999975544

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.43  E-value=6.9e-06  Score=65.83  Aligned_cols=108  Identities=25%  Similarity=0.390  Sum_probs=58.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh----CC-eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC--CCCHHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF----GY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPSEVTIKLLQKA   92 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~----~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   92 (215)
                      ++.+|++.||+||||||++..|+..+    |. ..+...|.+|....      +.+..+.....  ...... ...+...
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~------eQLk~yAe~lgvp~~~~~~-~~~l~~~  294 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAI------EQLKRYADTMGMPFYPVKD-IKKFKET  294 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHH------HHHHHHHHhcCCCeeehHH-HHHHHHH
Confidence            56789999999999999999999765    21 23333455554321      12222222111  111111 2233333


Q ss_pred             HHccCCCeEEEe--CCC-CCHHHHHHHHHhc---C--CCCcEEEEEecCH
Q 028025           93 MEESGNDKFLID--GFP-RNEENRAAFEAVT---K--IEPEFVLFFDCSE  134 (215)
Q Consensus        93 ~~~~~~~~~iid--g~~-~~~~~~~~~~~~~---~--~~~~~~i~L~~~~  134 (215)
                      +.....+.+++|  |++ ........+..+.   .  .....++.|.+..
T Consensus       295 l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~  344 (432)
T PRK12724        295 LARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS  344 (432)
T ss_pred             HHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence            433446889999  554 4456666665531   1  1224466666644

>PLN02840 tRNA dimethylallyltransferase

Probab=98.42  E-value=2.8e-07  Score=73.68  Aligned_cols=38  Identities=24%  Similarity=0.386  Sum_probs=33.0

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~   54 (215)
                      ...++++|+|.||+||||||++..|+++++..+++.|.
T Consensus        17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds   54 (421)
T PLN02840         17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS   54 (421)
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence            34567789999999999999999999999988887754

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=98.42  E-value=2.6e-05  Score=53.56  Aligned_cols=171  Identities=14%  Similarity=0.128  Sum_probs=94.1

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC--CeEeeHHHHHHHHHHcC--CCcHHHHHH-HHHcCCC----CCHHHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSG--SENGTMIQN-MIKEGKI----VPSEVTIK   87 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~----~~~~~~~~   87 (215)
                      .+.+..+|++.|.+-||||++|.++.+-+.  +.++-.|.+....++..  ...+..... ...++..    .+..+...
T Consensus        19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~   98 (205)
T COG3896          19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILEL   98 (205)
T ss_pred             CCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHH
Confidence            345678999999999999999999977774  66666654444332221  111100001 0011111    11111111


Q ss_pred             HH---HHHHHc--cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028025           88 LL---QKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV  162 (215)
Q Consensus        88 ~~---~~~~~~--~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~  162 (215)
                      .+   +..+..  ..+..++.|.+..+.++..........-+..++-+.+|.|+..+|-..|....++...-    .   
T Consensus        99 ~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~dR~pG~~rg----~---  171 (205)
T COG3896          99 AMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRGDRHPGWNRG----S---  171 (205)
T ss_pred             HHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcCCcCcchhhh----h---
Confidence            11   122221  12788999998888777766555333344568899999999999988761111111110    1   


Q ss_pred             HhhcchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhC
Q 028025          163 FLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFT  201 (215)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~  201 (215)
                      ++..       .....+-+-+|+ ..++.|....|.+.++
T Consensus       172 ~r~v-------Ha~~~YDlevDTS~~tp~EcAr~i~~r~q  204 (205)
T COG3896         172 ARAV-------HADAEYDLEVDTSATTPHECAREIHERYQ  204 (205)
T ss_pred             HHHh-------cCCcceeeeecccCCCHHHHHHHHHHHhc
Confidence            1111       111222356666 5588999999887654

>PF13173 AAA_14: AAA domain

Probab=98.40  E-value=4.2e-06  Score=56.69  Aligned_cols=99  Identities=13%  Similarity=0.246  Sum_probs=58.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (215)
                      ..+++|.||.||||||+++.+++.+.    +.+++.++.-......                  ++  ..+.+.+... .
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~------------------~~--~~~~~~~~~~-~   60 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD------------------PD--LLEYFLELIK-P   60 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh------------------hh--hHHHHHHhhc-c
Confidence            46799999999999999999998875    6777665533221000                  00  1222222211 1


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHH
Q 028025           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR  140 (215)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R  140 (215)
                      +...+++|-.-....+...+..+....++..|++..+......+
T Consensus        61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~  104 (128)
T PF13173_consen   61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSK  104 (128)
T ss_pred             CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhh
Confidence            36778888754333444444443222256778888877665543

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=98.39  E-value=5.7e-06  Score=59.84  Aligned_cols=120  Identities=13%  Similarity=0.179  Sum_probs=61.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHH-HHcC--CCcHHHH---------HHHHHcCCCCCHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSG--SENGTMI---------QNMIKEGKIVPSEVTIKLL   89 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~-~~~~--~~~~~~~---------~~~~~~~~~~~~~~~~~~~   89 (215)
                      .+++|.||+|+|||.+|-.||+++|.++++.|.+..-. +.-+  .+....+         ...+.+|. ++.+...+.+
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~L   80 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERL   80 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHH
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHH
Confidence            47899999999999999999999999999986653221 0111  1111111         12334444 4444445555


Q ss_pred             HHHHHccC-CCeEEEeCCCCCHHHHHHHHHhcCC-CCc--EEEEEecCH-HHHHHHHhhc
Q 028025           90 QKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKI-EPE--FVLFFDCSE-EEMERRILNR  144 (215)
Q Consensus        90 ~~~~~~~~-~~~~iidg~~~~~~~~~~~~~~~~~-~~~--~~i~L~~~~-e~~~~R~~~r  144 (215)
                      ...+.+.. +.++|++|  .++.....+.+-.+. .+.  .+.++..+. +.-..|..+|
T Consensus        81 i~~v~~~~~~~~~IlEG--GSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R  138 (233)
T PF01745_consen   81 ISEVNSYSAHGGLILEG--GSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR  138 (233)
T ss_dssp             HHHHHTTTTSSEEEEEE----HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred             HHHHHhccccCceEEeC--chHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence            55555544 88999998  444444444432333 222  256666654 5566677776

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=1.5e-06  Score=71.59  Aligned_cols=39  Identities=31%  Similarity=0.536  Sum_probs=31.9

Q ss_pred             cccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus        14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      .++--..|.=|++.||||||||.||+++|.+++..+++.
T Consensus       216 ~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~i  254 (802)
T KOG0733|consen  216 SSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSI  254 (802)
T ss_pred             hhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEee
Confidence            333334566799999999999999999999999877763

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=98.38  E-value=5.3e-06  Score=66.79  Aligned_cols=37  Identities=30%  Similarity=0.296  Sum_probs=30.3

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      .+++--...|+|.|++|||||||++.|++.+|...+.
T Consensus       213 ~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~  249 (399)
T PRK08099        213 EVRPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAW  249 (399)
T ss_pred             HHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence            3334457789999999999999999999999876543

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.37  E-value=4.3e-07  Score=62.45  Aligned_cols=28  Identities=36%  Similarity=0.584  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ...+.|+|+|+|||||||+++.+++.+.
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence            3467899999999999999999999884

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=98.33  E-value=9.5e-05  Score=54.84  Aligned_cols=145  Identities=17%  Similarity=0.170  Sum_probs=80.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (215)
                      +.|.+|++.|..||||..+.+.|.+.++   +.+.+.+.          +..              .+.....+.+.-..
T Consensus        29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~----------pt~--------------eE~~~p~lwRfw~~   84 (230)
T TIGR03707        29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPK----------PSD--------------RERTQWYFQRYVQH   84 (230)
T ss_pred             CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCC----------CCH--------------HHHcChHHHHHHHh
Confidence            4688999999999999999999999996   33332211          110              11112222222222


Q ss_pred             cC--CCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCC--
Q 028025           96 SG--NDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRE--  149 (215)
Q Consensus        96 ~~--~~~~iidg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~--  149 (215)
                      .+  |+..|+|+....                   ...+..|.+.  .....-+-+||.+|.++..+|+.+| ..+..  
T Consensus        85 lP~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~W  164 (230)
T TIGR03707        85 LPAAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQW  164 (230)
T ss_pred             CCCCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccc
Confidence            22  777777763322                   1111222221  2334446899999999999999988 22211  


Q ss_pred             CCcHHHH--HHHHHHHhhcchhHHHHHHh-cCcEEEEcCCC
Q 028025          150 DDNVETI--RKRFKVFLESSLPVVQYYEA-KGKVRKIDAAK  187 (215)
Q Consensus       150 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~id~~~  187 (215)
                      .....+.  .+++..|......++..-.. ..+-++|+++.
T Consensus       165 k~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~d  205 (230)
T TIGR03707       165 KLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDD  205 (230)
T ss_pred             cCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence            1222222  23444555544444332222 34788998864

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.29  E-value=2.2e-05  Score=57.31  Aligned_cols=170  Identities=19%  Similarity=0.214  Sum_probs=84.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHc---CC----CcHHHHHHHHHcCCCCCHHHH------
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GS----ENGTMIQNMIKEGKIVPSEVT------   85 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~------   85 (215)
                      ...-|+|+||+|+||+|+.+.|-++++. ..++.....+.....   +.    -....+.....+..++.....      
T Consensus        36 ~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yG  115 (231)
T KOG0707|consen   36 DFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYG  115 (231)
T ss_pred             CCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCC
Confidence            3377999999999999999999999973 223322222210000   00    011222222222222211111      


Q ss_pred             --HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcE-EEEEe-cCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028025           86 --IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF-VLFFD-CSEEEMERRILNRNQGREDDNVETIRKRFK  161 (215)
Q Consensus        86 --~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~-~i~L~-~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~  161 (215)
                        ...++....  .++..++|=.   .......   .....+. .+|+. .+...+.+|+..|    -.+..+.+.+|+.
T Consensus       116 tsi~av~~~~~--~gk~~ildId---~qg~~~i---~~~~~~~i~i~~~pps~~~~e~rl~~r----gte~~~~l~~r~~  183 (231)
T KOG0707|consen  116 TSIAAVQRLML--SGKVCILDID---LQGVQPI---RATSLDAIYIFIKPPSIKILEERLRAR----GTETEESLLKRLK  183 (231)
T ss_pred             chHHHHHHHHh--cCCcceeehh---hcCceee---ecCCCceEEEEecCCcchhHHHHhhcc----CcchHHHHHHHHH
Confidence              122222222  2666676621   1111111   1122332 55555 5667799999876    4456678888877


Q ss_pred             HHhhcchhHHHHHHhcC-cEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025          162 VFLESSLPVVQYYEAKG-KVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       162 ~~~~~~~~~~~~~~~~~-~~~~id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                      ..+......    ..++ ..+++.++..+++....+..++..-..
T Consensus       184 sa~~e~~~~----~~~g~~d~~~~ns~~lee~~kel~~~~~~~~~  224 (231)
T KOG0707|consen  184 SAEEEFEIL----ENSGSFDLVIVNSDRLEEAYKELEIFISSDDK  224 (231)
T ss_pred             hhhhhhccc----cCCccccceecCCCchhhhhhhhhhhhhHHHH
Confidence            433332222    2222 223343436888888888776654433

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=3.4e-05  Score=64.22  Aligned_cols=129  Identities=19%  Similarity=0.242  Sum_probs=70.2

Q ss_pred             ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH--HHHHHHHHHcC---------------C--CcHHHHHHH
Q 028025           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA--GDLLRAEIKSG---------------S--ENGTMIQNM   73 (215)
Q Consensus        13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~--~~~~~~~~~~~---------------~--~~~~~~~~~   73 (215)
                      +..+-...|.-|++.|||||||||+|+++|+.-+..+++.  -+++..+.-..               .  -+.+++...
T Consensus       460 F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi  539 (693)
T KOG0730|consen  460 FARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDAL  539 (693)
T ss_pred             HHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhH
Confidence            3445556788899999999999999999999987666653  23332221110               0  111222211


Q ss_pred             H-HcCCCCCHHHHHHHHHHHHHccC-----CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           74 I-KEGKIVPSEVTIKLLQKAMEESG-----NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        74 ~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      - .++.... ......+...+.+.+     ..++|+.+..+....-..+.  .....|.+||+..|.......+.+-
T Consensus       540 ~~~R~g~~~-~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALl--RPGRlD~iiyVplPD~~aR~~Ilk~  613 (693)
T KOG0730|consen  540 AGSRGGSSS-GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALL--RPGRLDRIIYVPLPDLEARLEILKQ  613 (693)
T ss_pred             hhccCCCcc-chHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHc--CCcccceeEeecCccHHHHHHHHHH
Confidence            1 1111111 111222333333222     35666666543322212222  4456888999999998887777654

>PLN02748 tRNA dimethylallyltransferase

Probab=98.28  E-value=8.2e-07  Score=72.24  Aligned_cols=37  Identities=32%  Similarity=0.515  Sum_probs=33.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~   54 (215)
                      ..++.+|+|.||+|||||||+..||+.++..+|+.|.
T Consensus        19 ~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds   55 (468)
T PLN02748         19 KGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS   55 (468)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence            3567799999999999999999999999999999875

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=98.26  E-value=7.3e-07  Score=68.22  Aligned_cols=33  Identities=18%  Similarity=0.447  Sum_probs=30.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~   55 (215)
                      +|+|.||+|||||+++..|++.++..+++.|.+
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~   33 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM   33 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence            489999999999999999999999999998763

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2

Probab=98.24  E-value=2.8e-06  Score=58.88  Aligned_cols=77  Identities=26%  Similarity=0.371  Sum_probs=46.3

Q ss_pred             cCCC-CcEEEEEecCHHHHHHHHhhccCCCCCC--cHHHHHHHHH-HHhhcchhHHHHHHhcCcEEEEcCCC-CHHHHHH
Q 028025          120 TKIE-PEFVLFFDCSEEEMERRILNRNQGREDD--NVETIRKRFK-VFLESSLPVVQYYEAKGKVRKIDAAK-PVAEVFD  194 (215)
Q Consensus       120 ~~~~-~~~~i~L~~~~e~~~~R~~~r~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~~~-~~~e~~~  194 (215)
                      ..+. ||++|||++|++++.+|+.+|  ||+.+  ...+..++++ ..+..+..   .+. ..+++++|++. ++.+..+
T Consensus        63 ~~~~~pdl~IYL~~~~e~~~~RI~kR--gR~~E~~i~~~Yl~~L~~~~y~~~~~---~~~-~~~vl~id~~~~d~~~~~~  136 (146)
T PF01712_consen   63 EIPKSPDLIIYLDASPETCLERIKKR--GREEEKNIPLEYLERLHEEAYEDWLK---KYD-STPVLVIDADNLDFVENPE  136 (146)
T ss_dssp             HCCHH-SEEEEEE--HHHHHHHHHHC--TTGGGTTS-HHHHHHHHHHHHCCHHS---CCT-TTTGCEEEECEEECCSHHT
T ss_pred             HhhccCCeEEEEeCCHHHHHHHHHHh--CCchhcCCCHHHHHHHhHHHHHHHHH---hCC-CCceEEEECCccCcccCHH
Confidence            4566 999999999999999999999  66555  2445556666 44433221   111 23567777744 5666665


Q ss_pred             HHHHhhCC
Q 028025          195 AVKAVFTP  202 (215)
Q Consensus       195 ~i~~~l~~  202 (215)
                      .+...+.+
T Consensus       137 ~~~~~~~~  144 (146)
T PF01712_consen  137 DIEQVINQ  144 (146)
T ss_dssp             THHHHHCC
T ss_pred             HHHHHHHh
Confidence            65555544

7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....

>PRK09087 hypothetical protein; Validated

Probab=98.23  E-value=8.4e-06  Score=60.71  Aligned_cols=39  Identities=21%  Similarity=0.188  Sum_probs=32.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~   59 (215)
                      ...++|.|++|||||+|++.+++..+..+++.+++..+.
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~   82 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDA   82 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHH
Confidence            345899999999999999999999999999886554444

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=98.22  E-value=2.3e-06  Score=62.57  Aligned_cols=40  Identities=20%  Similarity=0.231  Sum_probs=32.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeE-eeHHHHHHHHHHc
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIKS   62 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~-i~~~~~~~~~~~~   62 (215)
                      ++|+|+|.|||||||+++.+.+. +..+ ++.++.++..+..
T Consensus         1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~~   41 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILAI   41 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHHH
Confidence            58999999999999999999665 4445 8888888877654

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.21  E-value=5.3e-06  Score=56.20  Aligned_cols=109  Identities=15%  Similarity=0.129  Sum_probs=54.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh--------CCe--EeeHHHHHHHHHHcCCCcHHHHHHHHHcCCC--CCHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF--------GYT--HLSAGDLLRAEIKSGSENGTMIQNMIKEGKI--VPSEVTIK   87 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~--------~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   87 (215)
                      ...+++|.|++|+|||++++.+++.+        ...  ++......     ....+...+...+.....  .......+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~l~~   77 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-----TPRDFAQEILEALGLPLKSRQTSDELRS   77 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-----SHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-----CHHHHHHHHHHHhCccccccCCHHHHHH
Confidence            35679999999999999999999987        332  33221110     001112222222222222  23344456


Q ss_pred             HHHHHHHccCCCeEEEeCCCC--CHHHHHHHHHhcCCCCcEEEEEecCH
Q 028025           88 LLQKAMEESGNDKFLIDGFPR--NEENRAAFEAVTKIEPEFVLFFDCSE  134 (215)
Q Consensus        88 ~~~~~~~~~~~~~~iidg~~~--~~~~~~~~~~~~~~~~~~~i~L~~~~  134 (215)
                      .+.+.+.......+|+|..-.  .......+.. ..-...+.+.|-..+
T Consensus        78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~~~~~~vvl~G~~  125 (131)
T PF13401_consen   78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRS-LLNESNIKVVLVGTP  125 (131)
T ss_dssp             HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHH-HTCSCBEEEEEEESS
T ss_pred             HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHH-HHhCCCCeEEEEECh
Confidence            777777665445789997421  2333444444 222555555554443

>PF05729 NACHT: NACHT domain

Probab=98.20  E-value=1e-05  Score=56.92  Aligned_cols=23  Identities=35%  Similarity=0.719  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +++|.|.||+||||+++.++..+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            68999999999999999999888

>PRK14974 cell division protein FtsY; Provisional

Probab=98.20  E-value=6.2e-06  Score=64.72  Aligned_cols=27  Identities=33%  Similarity=0.519  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+|.+|+++|++||||||++..|+..+
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l  164 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYL  164 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            458899999999999999888888766

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=98.18  E-value=1.2e-06  Score=62.19  Aligned_cols=31  Identities=23%  Similarity=0.422  Sum_probs=26.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC--CeEeeH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA   52 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~   52 (215)
                      ++|+|.|+|||||||+|..|++.++  ..++..
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat   34 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIAT   34 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence            4799999999999999999999986  444444

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.18  E-value=1.8e-06  Score=67.70  Aligned_cols=29  Identities=17%  Similarity=0.417  Sum_probs=25.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      .+..+++|.|||||||||+|+.|++.++.
T Consensus        76 ~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       76 ERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            35678999999999999999999999963

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.17  E-value=1.7e-06  Score=59.01  Aligned_cols=28  Identities=32%  Similarity=0.615  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      +..++|.|||||||||+++.++..+...
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            4579999999999999999999999653

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.16  E-value=1.2e-05  Score=64.92  Aligned_cols=39  Identities=33%  Similarity=0.619  Sum_probs=30.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh---CC--eEeeHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLR   57 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~---~~--~~i~~~~~~~   57 (215)
                      ..+|.+|+++|++||||||++..||..+   |.  .++++ |.+|
T Consensus        97 ~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~-D~~R  140 (429)
T TIGR01425        97 KGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA-DTFR  140 (429)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC-cccc
Confidence            3568899999999999999999999877   43  44444 5455

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=98.16  E-value=0.0002  Score=58.88  Aligned_cols=146  Identities=12%  Similarity=0.138  Sum_probs=81.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (215)
                      .+.+.+|++.|..||||++..+.|.+.++   +.+.....          +.              +.+.....+.+...
T Consensus        37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~----------P~--------------~eE~~~~flwRfw~   92 (493)
T TIGR03708        37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGR----------PS--------------DEERERPPMWRFWR   92 (493)
T ss_pred             cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCC----------CC--------------HHHhcCcHHHHHHH
Confidence            35788999999999999999999999995   33332211          00              01111222222222


Q ss_pred             ccC--CCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCC-
Q 028025           95 ESG--NDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRE-  149 (215)
Q Consensus        95 ~~~--~~~~iidg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~-  149 (215)
                      ..+  |...|+|+....                   ...+..|.+.  .....-+-+||.+|.++..+|+..| ..+.. 
T Consensus        93 ~lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~  172 (493)
T TIGR03708        93 RLPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETR  172 (493)
T ss_pred             hCCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence            222  778888864322                   1111122221  2334446899999999999999998 22211 


Q ss_pred             -CCcHHHHH--HHHHHHhhcchhHHHHHH-hcCcEEEEcCCC
Q 028025          150 -DDNVETIR--KRFKVFLESSLPVVQYYE-AKGKVRKIDAAK  187 (215)
Q Consensus       150 -~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~  187 (215)
                       ...+.++.  +++..|......++..-. ...+-++|+++.
T Consensus       173 WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~add  214 (493)
T TIGR03708       173 WRVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGED  214 (493)
T ss_pred             cCCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence             12333333  334455554444433222 223788998864

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]

Probab=98.16  E-value=3.4e-05  Score=54.86  Aligned_cols=34  Identities=29%  Similarity=0.593  Sum_probs=25.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC------CeEeeHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLL   56 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~------~~~i~~~~~~   56 (215)
                      ++.+.|.|+|||||+++++--.-.      ..+.+.||+.
T Consensus         3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFl   42 (291)
T KOG4622|consen    3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFL   42 (291)
T ss_pred             eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence            578999999999999998743321      4566667765

>PHA03133 thymidine kinase; Provisional

Probab=98.16  E-value=0.00023  Score=55.66  Aligned_cols=27  Identities=30%  Similarity=0.427  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +-.+|+|.|+.|.||||+++.+...++
T Consensus        39 ~~~rvYlDG~~GvGKTTt~~~l~~a~~   65 (368)
T PHA03133         39 ALLRIYVDGPHGLGKTTTAAALAAALG   65 (368)
T ss_pred             eEEEEEEeCCCcCCHHHHHHHHHHhhC
Confidence            356799999999999999988888875

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=1.7e-06  Score=66.08  Aligned_cols=26  Identities=23%  Similarity=0.685  Sum_probs=24.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ..+|.+.||||.||||+|++||+++.
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLS  202 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLS  202 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence            56899999999999999999999995

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=98.15  E-value=2.7e-06  Score=65.32  Aligned_cols=36  Identities=22%  Similarity=0.435  Sum_probs=33.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~   55 (215)
                      ++.+|+|.||+|||||-+|-.||+++|..+|+.|.+
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm   37 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM   37 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence            467899999999999999999999999999998765

>PLN02796 D-glycerate 3-kinase

Probab=98.14  E-value=2e-06  Score=67.07  Aligned_cols=38  Identities=29%  Similarity=0.332  Sum_probs=31.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL   56 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~   56 (215)
                      .+|.+|.|.|++||||||+++.|+..+.     ...++.|+++
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            4689999999999999999999998884     3456666665

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=98.14  E-value=0.00031  Score=53.17  Aligned_cols=144  Identities=13%  Similarity=0.136  Sum_probs=79.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (215)
                      .|.+|++.|..||||..+.+.|.+.++   +.+.+.+.          +..              .+.....+.+.....
T Consensus        55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~----------Pt~--------------eE~~~p~lWRfw~~l  110 (264)
T TIGR03709        55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKA----------PSA--------------EELDHDFLWRIHKAL  110 (264)
T ss_pred             CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCC----------CCH--------------HHHcCchHHHHHHhC
Confidence            488999999999999999999999985   33332211          111              011111222222222


Q ss_pred             C--CCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCC--
Q 028025           97 G--NDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRED--  150 (215)
Q Consensus        97 ~--~~~~iidg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~--  150 (215)
                      +  |+..|+|+....                   ...+..|.+.  .....-+-+||.+|.++..+|+.+| ..+...  
T Consensus       111 P~~G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk  190 (264)
T TIGR03709       111 PERGEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWK  190 (264)
T ss_pred             CCCCeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCccccc
Confidence            2  778888863322                   1111122211  2333446899999999999999988 222111  


Q ss_pred             CcHHH--HHHHHHHHhhcchhHHHHHH-hcCcEEEEcCCC
Q 028025          151 DNVET--IRKRFKVFLESSLPVVQYYE-AKGKVRKIDAAK  187 (215)
Q Consensus       151 ~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~  187 (215)
                      ....+  ..+++..|......++..-. ...+.++|+++.
T Consensus       191 ~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~d  230 (264)
T TIGR03709       191 FSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADD  230 (264)
T ss_pred             CCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence            22222  23344555554444433222 134788998864

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=98.12  E-value=3.6e-06  Score=56.93  Aligned_cols=28  Identities=32%  Similarity=0.487  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      ...+|++.|+.||||||+++.+++.++.
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            4568999999999999999999999985

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR00959 ffh signal recognition particle protein

Probab=98.11  E-value=5.9e-05  Score=61.18  Aligned_cols=40  Identities=38%  Similarity=0.643  Sum_probs=30.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh----C--CeEeeHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRA   58 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~----~--~~~i~~~~~~~~   58 (215)
                      ..+|.+|++.|++||||||++..||..+    |  ..++++ |.+|.
T Consensus        96 ~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~-D~~R~  141 (428)
T TIGR00959        96 KKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVAC-DLYRP  141 (428)
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEec-cccch
Confidence            4568899999999999999999888774    2  345655 44544

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=98.11  E-value=4e-06  Score=64.60  Aligned_cols=36  Identities=17%  Similarity=0.313  Sum_probs=31.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~   55 (215)
                      ..+++|+|.||+|||||.||-.||++ +..+|++|.+
T Consensus         2 ~~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~   37 (300)
T PRK14729          2 KENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI   37 (300)
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence            34568999999999999999999999 5589998664

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.11  E-value=3.9e-06  Score=57.63  Aligned_cols=27  Identities=30%  Similarity=0.603  Sum_probs=24.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      |+|.|+||+|||++++.+++.++..++
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~~   28 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPVI   28 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence            789999999999999999999986554

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.10  E-value=3.6e-06  Score=61.60  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeE
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~   49 (215)
                      ..-+++.||||+||||+|+.+|+.++..+
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~   78 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANELGVNF   78 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred             cceEEEECCCccchhHHHHHHHhccCCCe
Confidence            45689999999999999999999998543

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.10  E-value=2.5e-05  Score=63.52  Aligned_cols=27  Identities=37%  Similarity=0.628  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+|.+|+++|++||||||++..||..+
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L  119 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYF  119 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            568899999999999999999999887

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=1.2e-05  Score=62.96  Aligned_cols=125  Identities=26%  Similarity=0.424  Sum_probs=69.6

Q ss_pred             cccccccccCCCCCeEEEEEcCCCCChHHHHHHHHHHh---CC-eEeeHHHHHHHHHHcCCCcHHHHHHHHHcC------
Q 028025            8 PVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF---GY-THLSAGDLLRAEIKSGSENGTMIQNMIKEG------   77 (215)
Q Consensus         8 p~~~~~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~---~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------   77 (215)
                      |-+.+++. ..++|.+|++.|.-||||||.|..||-++   |+ ..+-++|.+|.....     +.-+.....+      
T Consensus        89 p~~~~~~~-~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfD-----QLkqnA~k~~iP~ygs  162 (483)
T KOG0780|consen   89 PGKSALQP-KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFD-----QLKQNATKARVPFYGS  162 (483)
T ss_pred             CCCccccc-ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHH-----HHHHHhHhhCCeeEec
Confidence            43333332 34679999999999999999999999888   33 334445666654221     1111111111      


Q ss_pred             --CCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHh----cCCCCcE-EEEEecCHHHHHH
Q 028025           78 --KIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV----TKIEPEF-VLFFDCSEEEMER  139 (215)
Q Consensus        78 --~~~~~~~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~----~~~~~~~-~i~L~~~~e~~~~  139 (215)
                        ..-|..+..+-+. ...+.....+|+|...+-......+.+.    ....||. ++.++++......
T Consensus       163 yte~dpv~ia~egv~-~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae  230 (483)
T KOG0780|consen  163 YTEADPVKIASEGVD-RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE  230 (483)
T ss_pred             ccccchHHHHHHHHH-HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH
Confidence              1112222233333 3334448899999765443333333333    4566777 5556777655443

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=98.08  E-value=3.2e-06  Score=67.39  Aligned_cols=38  Identities=26%  Similarity=0.240  Sum_probs=31.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL   56 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~   56 (215)
                      .+|.+|.|.|++||||||+++.|...+.     ...++.||++
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            4689999999999999999999987763     4567777766

>CHL00181 cbbX CbbX; Provisional

Probab=98.08  E-value=2.8e-05  Score=59.98  Aligned_cols=26  Identities=23%  Similarity=0.382  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+.-+++.||||+||||+|+.+++.+
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            45568999999999999999998876

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.08  E-value=3.7e-06  Score=67.15  Aligned_cols=34  Identities=15%  Similarity=0.325  Sum_probs=30.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~   53 (215)
                      .|..|++.||||+||||+|+.|++.++..++..+
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd   79 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   79 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence            4577999999999999999999999998777765

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK10867 signal recognition particle protein; Provisional

Probab=98.08  E-value=5e-05  Score=61.66  Aligned_cols=40  Identities=30%  Similarity=0.520  Sum_probs=29.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh----C--CeEeeHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRA   58 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~----~--~~~i~~~~~~~~   58 (215)
                      ..+|.+|+++|++||||||++..||..+    |  ..++++ |.+|.
T Consensus        97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~-D~~R~  142 (433)
T PRK10867         97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA-DVYRP  142 (433)
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc-cccch
Confidence            4568899999999999999888887755    3  345666 44554

>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type

Probab=98.08  E-value=0.00019  Score=50.59  Aligned_cols=117  Identities=13%  Similarity=0.074  Sum_probs=65.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCC---eEeeHHHHHHHHHHc--CCCc-------------HHHHHHHHHcCCCCCHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKS--GSEN-------------GTMIQNMIKEGKIVPSEV   84 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~---~~i~~~~~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~   84 (215)
                      +|+|+|-.+|||-|++..|.++++.   .++...+-+......  +...             ......+.+.........
T Consensus         1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~   80 (182)
T TIGR01223         1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGF   80 (182)
T ss_pred             CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccH
Confidence            5899999999999999999998874   245543333332222  1111             111111111111111112


Q ss_pred             HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        85 ~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      +...+..   .....++|+.+. +....+..|.. ....--+.|-+++++++..+|.-..
T Consensus        81 F~r~~~~---~~~~~v~iIsD~-Rr~~dv~~f~~-~~g~~~~~VRV~AseetR~~Rgw~F  135 (182)
T TIGR01223        81 FCRKIVE---GISQPIWLVSDT-RRVSDIQWFRE-AYGAVTQTVRVVALEQSRQQRGWVF  135 (182)
T ss_pred             HHHHHHh---ccCCCEEEEeCC-CcccHHHHHHH-HcCCceEEEEEecCHHHHHHHHHhc
Confidence            2222222   222457777764 34455666666 4444456899999999999997554

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).

>COG4240 Predicted kinase [General function prediction only]

Probab=98.06  E-value=6.2e-06  Score=60.07  Aligned_cols=47  Identities=36%  Similarity=0.388  Sum_probs=36.4

Q ss_pred             cccccCCCCCeEEEEEcCCCCChHHHHHHHHHHh---C---CeEeeHHHHHHH
Q 028025           12 ADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF---G---YTHLSAGDLLRA   58 (215)
Q Consensus        12 ~~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~---~---~~~i~~~~~~~~   58 (215)
                      +......++|.++.|+||-||||||++-.+...+   |   ...+|.||++..
T Consensus        41 ap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlt   93 (300)
T COG4240          41 APWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLT   93 (300)
T ss_pred             hhhhhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcc
Confidence            3444556789999999999999999998876555   2   466788888753

>COG3911 Predicted ATPase [General function prediction only]

Probab=98.02  E-value=6.5e-05  Score=51.14  Aligned_cols=30  Identities=30%  Similarity=0.598  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeE
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~   49 (215)
                      .+..+++++|.||+|||||..+|++ -|+..
T Consensus         7 nR~~~fIltGgpGaGKTtLL~aLa~-~Gfat   36 (183)
T COG3911           7 NRHKRFILTGGPGAGKTTLLAALAR-AGFAT   36 (183)
T ss_pred             ccceEEEEeCCCCCcHHHHHHHHHH-cCcee
Confidence            4457899999999999999999966 45533

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=98.02  E-value=5.2e-06  Score=66.38  Aligned_cols=34  Identities=15%  Similarity=0.325  Sum_probs=30.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~   53 (215)
                      .|..|+|.||||+||||+|+.|++.++..++..+
T Consensus        49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD   82 (443)
T PRK05201         49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (443)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence            3578999999999999999999999998777664

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.01  E-value=5.4e-05  Score=60.63  Aligned_cols=27  Identities=30%  Similarity=0.473  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+|.+|++.||+|+||||.+..||..+
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~  198 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIY  198 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999999876

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=98.01  E-value=0.00012  Score=54.37  Aligned_cols=144  Identities=15%  Similarity=0.182  Sum_probs=72.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (215)
                      .|.+|+|.|..||||+.+.+.|.+.++   +.+.+.+.-..+.                        .....+.+.....
T Consensus        30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE------------------------~~~p~lwRfw~~l   85 (228)
T PF03976_consen   30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEE------------------------LRRPFLWRFWRAL   85 (228)
T ss_dssp             HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHH------------------------HTS-TTHHHHTTS
T ss_pred             CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhH------------------------cCCCcHHHHHHhC
Confidence            468999999999999999999988884   4444332111110                        0011122222222


Q ss_pred             C--CCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCC--C
Q 028025           97 G--NDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRE--D  150 (215)
Q Consensus        97 ~--~~~~iidg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~--~  150 (215)
                      +  |+..|+|+....                   .+.+..|.+.  .....-+-+||..|.++..+|+.+| ..+..  .
T Consensus        86 P~~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~wk  165 (228)
T PF03976_consen   86 PARGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKRWK  165 (228)
T ss_dssp             --TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGGG
T ss_pred             CCCCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCcccccc
Confidence            2  888888864322                   1111122221  2333446899999999999999998 22221  1


Q ss_pred             CcHHHHHH--HHHHHhhcchhHHHHHH-hcCcEEEEcCCC
Q 028025          151 DNVETIRK--RFKVFLESSLPVVQYYE-AKGKVRKIDAAK  187 (215)
Q Consensus       151 ~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~  187 (215)
                      ..+.+...  .+..|......++..-. ...+-++|+++.
T Consensus       166 v~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~d  205 (228)
T PF03976_consen  166 VSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADD  205 (228)
T ss_dssp             --HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SS
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCC
Confidence            22333222  34455554444433222 234788998863

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>CHL00195 ycf46 Ycf46; Provisional

Probab=98.01  E-value=0.00017  Score=59.59  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ..|.-|++.||||+|||++|+.+|..++..++.
T Consensus       257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~  289 (489)
T CHL00195        257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLR  289 (489)
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            356779999999999999999999999876554

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.00  E-value=3.5e-05  Score=59.44  Aligned_cols=88  Identities=30%  Similarity=0.352  Sum_probs=58.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh---CC-eEeeHHHHHHHHHHc-CCCcHHHHHHHH-H-cCCCCCHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GY-THLSAGDLLRAEIKS-GSENGTMIQNMI-K-EGKIVPSEVTIKLLQ   90 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~---~~-~~i~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~   90 (215)
                      ..+|.+|++.|..|+||||-..+||..|   |+ .++.++|.+|..... ...+++...-.+ . ....-|.....+.++
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~  215 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ  215 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence            4579999999999999999999999988   33 556678888876433 222222221111 1 112334556677777


Q ss_pred             HHHHccCCCeEEEeCC
Q 028025           91 KAMEESGNDKFLIDGF  106 (215)
Q Consensus        91 ~~~~~~~~~~~iidg~  106 (215)
                      ++..+. ...+++|.-
T Consensus       216 ~Akar~-~DvvliDTA  230 (340)
T COG0552         216 AAKARG-IDVVLIDTA  230 (340)
T ss_pred             HHHHcC-CCEEEEeCc
Confidence            776553 789999953

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=97.99  E-value=5e-05  Score=55.57  Aligned_cols=45  Identities=13%  Similarity=0.113  Sum_probs=31.2

Q ss_pred             CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      ++.+|++|.....++ ..|.. .....|...|++++-+...+|..+|
T Consensus       235 ~rIvI~EGnYlLl~~-~~Wkd-i~k~~d~k~~idV~~~~a~~RVa~R  279 (323)
T KOG2702|consen  235 TRIVILEGNYLLLDQ-ENWKD-IYKTLDDKYKIDVDYEAAEERVAKR  279 (323)
T ss_pred             ceEEEEeccEEEecC-ccHHH-HHHHhhhheeccccHHHHHHHHHHH
Confidence            678899985433322 33444 3333455699999999999999999

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.98  E-value=0.00015  Score=57.81  Aligned_cols=27  Identities=30%  Similarity=0.471  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+|.+|+|.|++||||||++..||..+
T Consensus       239 ~~~~vI~LVGptGvGKTTTiaKLA~~L  265 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQF  265 (436)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHHHHH
Confidence            456899999999999999999999777

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.98  E-value=7.4e-06  Score=58.07  Aligned_cols=22  Identities=36%  Similarity=0.770  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 028025           24 VFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~   45 (215)
                      |+|+|+||+||||+++.+.+.+
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            8999999999999999999998

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK06620 hypothetical protein; Validated

Probab=97.98  E-value=0.0002  Score=52.90  Aligned_cols=30  Identities=13%  Similarity=0.025  Sum_probs=26.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ..++|.||||||||++++.+++..+..+++
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~   74 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK   74 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence            568999999999999999999988865554

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.97  E-value=5.4e-05  Score=60.37  Aligned_cols=118  Identities=26%  Similarity=0.364  Sum_probs=63.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHHHHHHHc-CCCcHHHHHH-HHHcC-CCCCHHHHHH
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKS-GSENGTMIQN-MIKEG-KIVPSEVTIK   87 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~~~~~~~-~~~~~~~~~~-~~~~~-~~~~~~~~~~   87 (215)
                      +...+|.+|++.|.-||||||.|.+||.+|   |  ...+++ |++|.+... ....++.+.- .+..+ ..-|.++...
T Consensus        95 l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaa-D~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~  173 (451)
T COG0541          95 LAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAA-DTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKA  173 (451)
T ss_pred             cCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEec-ccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHH
Confidence            335678999999999999999999999988   2  233444 777765322 1111111100 11111 2223444455


Q ss_pred             HHHHHHHccCCCeEEEeCCCCCH---HHHHHHHHh-cCCCCcE-EEEEecCHH
Q 028025           88 LLQKAMEESGNDKFLIDGFPRNE---ENRAAFEAV-TKIEPEF-VLFFDCSEE  135 (215)
Q Consensus        88 ~~~~~~~~~~~~~~iidg~~~~~---~~~~~~~~~-~~~~~~~-~i~L~~~~e  135 (215)
                      .++.+-.. ..+++|+|...+..   .-..++..+ ....|+- ++.+++...
T Consensus       174 al~~ak~~-~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G  225 (451)
T COG0541         174 ALEKAKEE-GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG  225 (451)
T ss_pred             HHHHHHHc-CCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence            55544333 26899999644322   222233322 3345555 555566443

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.97  E-value=6.5e-06  Score=59.60  Aligned_cols=29  Identities=34%  Similarity=0.551  Sum_probs=24.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|+||+||||||+.+-| +.+
T Consensus        23 l~v~~Gevv~iiGpSGSGKSTlLRcl-N~L   51 (240)
T COG1126          23 LSVEKGEVVVIIGPSGSGKSTLLRCL-NGL   51 (240)
T ss_pred             eeEcCCCEEEEECCCCCCHHHHHHHH-HCC
Confidence            34457889999999999999999988 444

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.96  E-value=7.1e-06  Score=57.14  Aligned_cols=31  Identities=19%  Similarity=0.351  Sum_probs=26.3

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++...++-+|.|+||+||||||+.+.+|.-.
T Consensus        23 sl~v~~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             eeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence            4445578899999999999999999998755

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.95  E-value=9.4e-06  Score=60.58  Aligned_cols=27  Identities=26%  Similarity=0.533  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++..+|.|+||||+|||||...|...+
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~   53 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIREL   53 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence            467899999999999999999999888

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=0.00039  Score=54.84  Aligned_cols=33  Identities=27%  Similarity=0.536  Sum_probs=28.1

Q ss_pred             CCeE-EEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025           20 KPTV-VFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus        20 ~~~~-I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      +|+. |++.||||+|||-||+++|..-+-.+|+.
T Consensus       243 rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNV  276 (491)
T KOG0738|consen  243 RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNV  276 (491)
T ss_pred             cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence            4544 89999999999999999999999766663

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.95  E-value=1.2e-05  Score=57.04  Aligned_cols=28  Identities=14%  Similarity=0.210  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .++.++.|+|++||||||+++.|...+.
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence            3566899999999999999999987774

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.95  E-value=9.9e-06  Score=61.76  Aligned_cols=27  Identities=30%  Similarity=0.439  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +...-+++.||||+||||+|+.+++.+
T Consensus        40 ~~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        40 KQVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            345668999999999999999999876

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.95  E-value=4.4e-05  Score=56.95  Aligned_cols=33  Identities=33%  Similarity=0.365  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh------CCeEeeH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF------GYTHLSA   52 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~------~~~~i~~   52 (215)
                      ++..++|.|+||||||+++..++-+.      +..+++.
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~   56 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF   56 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence            57899999999999999999865332      3456664

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.94  E-value=1e-05  Score=58.84  Aligned_cols=26  Identities=31%  Similarity=0.563  Sum_probs=24.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      |.+|++.||+||||||.+-+||.++.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~   26 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLK   26 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHh
Confidence            68999999999999999999998883

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK09169 hypothetical protein; Validated

Probab=97.94  E-value=0.00024  Score=66.56  Aligned_cols=109  Identities=11%  Similarity=0.058  Sum_probs=72.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHH-HcCCCCCHHHHHHHHHHHHHccCCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGND   99 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   99 (215)
                      ...|+++|.+|+||||+++.|+..+++.+++.|..+....      +..+...+ ..|  .+.+.-...+.+.+. . ..
T Consensus      2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~------GrkI~rIFa~eG--~FRe~Eaa~V~Dllr-~-~v 2179 (2316)
T PRK09169       2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKI------GKKIARIQALRG--LSPEQAAARVRDALR-W-EV 2179 (2316)
T ss_pred             hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHh------CCCHHHHHHhcC--chHHHHHHHHHHHhc-C-Ce
Confidence            4579999999999999999999999999999887776642      22223333 234  555555666666653 1 22


Q ss_pred             eEEEeCCCCCH-HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025          100 KFLIDGFPRNE-ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus       100 ~~iidg~~~~~-~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      ++=.+|+.... .....+..     -.++||+..+.+++.+|+.+.
T Consensus      2180 VLSTGGGav~~~enr~~L~~-----~GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169       2180 VLPAEGFGAAVEQARQALGA-----KGLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred             EEeCCCCcccCHHHHHHHHH-----CCEEEEEECCHHHHHHHhccC
Confidence            22233444333 33334443     346999999999999999754

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=97.94  E-value=1.6e-05  Score=61.62  Aligned_cols=111  Identities=21%  Similarity=0.199  Sum_probs=60.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEe---eH-HHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH--HHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL---SA-GDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT--IKLLQKAME   94 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   94 (215)
                      .--|+++|.+|+||||++-+|-+.+....|   .. +|-+|.-+..+-.++..-.          .+..  ..-+...+.
T Consensus        50 gctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edr----------eenirriaevaklfa  119 (627)
T KOG4238|consen   50 GCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDR----------EENIRRIAEVAKLFA  119 (627)
T ss_pred             ceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhH----------HHHHHHHHHHHHHHh
Confidence            446999999999999999999888853333   22 3445544433222211000          0111  111222222


Q ss_pred             ccCCCeEEEeCCCCCHH----HHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           95 ESGNDKFLIDGFPRNEE----NRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        95 ~~~~~~~iidg~~~~~~----~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      .  ...+++-.|...+.    ..+.+.+ ...-|.+-++++++.++|.+|-.+.
T Consensus       120 d--aglvcitsfispf~~dr~~arkihe-~~~l~f~ev~v~a~l~vceqrd~k~  170 (627)
T KOG4238|consen  120 D--AGLVCITSFISPFAKDRENARKIHE-SAGLPFFEVFVDAPLNVCEQRDVKG  170 (627)
T ss_pred             c--CCceeeehhcChhhhhhhhhhhhhc-ccCCceEEEEecCchhhhhhcChHH
Confidence            1  33445555443332    2223332 3345667899999999999986543

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.93  E-value=1.3e-05  Score=53.44  Aligned_cols=29  Identities=28%  Similarity=0.462  Sum_probs=25.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      ....+|++.|+-||||||+++.+++.+|.
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~   41 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARALGI   41 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            34578999999999999999999999974

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=5.2e-05  Score=58.20  Aligned_cols=36  Identities=22%  Similarity=0.484  Sum_probs=32.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~   55 (215)
                      +-.+|+|.|+.|||||-|+-.||.+|+..+|+.|.+
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkm   41 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKM   41 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccce
Confidence            667999999999999999999999999999987554

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.92  E-value=4.2e-05  Score=57.48  Aligned_cols=25  Identities=32%  Similarity=0.607  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +...++|.|+||||||++|..++-.
T Consensus        20 ~gs~~lI~G~pGsGKT~la~~~l~~   44 (237)
T TIGR03877        20 ERNVVLLSGGPGTGKSIFSQQFLWN   44 (237)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            5788999999999999999876543

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.92  E-value=0.00014  Score=59.56  Aligned_cols=28  Identities=18%  Similarity=0.273  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      +..+++.||+|+||||+|+.|++.+++.
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            4578999999999999999999999863

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.91  E-value=1.2e-05  Score=62.57  Aligned_cols=30  Identities=27%  Similarity=0.438  Sum_probs=26.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      .-|+|.|+||+||||+++.||+.+++.++.
T Consensus        65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~r   94 (327)
T TIGR01650        65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVR   94 (327)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence            459999999999999999999999976653

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PF13245 AAA_19: Part of AAA domain

Probab=97.90  E-value=1.7e-05  Score=48.39  Aligned_cols=25  Identities=40%  Similarity=0.608  Sum_probs=18.4

Q ss_pred             CeEEEEEcCCCCChH-HHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKG-TQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKs-Tla~~La~~~   45 (215)
                      ..+.+|.|||||||| |+++.++..+
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            456788999999999 5555555544

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=97.90  E-value=7.4e-06  Score=54.62  Aligned_cols=27  Identities=30%  Similarity=0.511  Sum_probs=20.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      ++|.|+||+||||+++.||+.++..+.
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~f~   28 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLSFK   28 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCcee
Confidence            689999999999999999999986554

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.89  E-value=1.8e-05  Score=54.23  Aligned_cols=26  Identities=31%  Similarity=0.613  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ....++|.|+||+||||+++.+++.+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999999987

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.89  E-value=1.7e-05  Score=65.88  Aligned_cols=31  Identities=19%  Similarity=0.444  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      ...+.+++|||||||||..+.||+.+|+.+.
T Consensus        44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~   74 (519)
T PF03215_consen   44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQ   74 (519)
T ss_pred             CcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence            3568899999999999999999999997655

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.89  E-value=1e-05  Score=52.93  Aligned_cols=23  Identities=26%  Similarity=0.601  Sum_probs=20.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhC
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      |+|.|+||+|||++++.|++.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999988774

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK04328 hypothetical protein; Provisional

Probab=97.88  E-value=5.1e-05  Score=57.46  Aligned_cols=25  Identities=32%  Similarity=0.607  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +...++|.|+||||||+++..++..
T Consensus        22 ~gs~ili~G~pGsGKT~l~~~fl~~   46 (249)
T PRK04328         22 ERNVVLLSGGPGTGKSIFSQQFLWN   46 (249)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            5788999999999999999986554

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=5.2e-05  Score=58.97  Aligned_cols=47  Identities=23%  Similarity=0.421  Sum_probs=37.2

Q ss_pred             ccccccc--ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025            6 ETPVKEA--DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus         6 ~~p~~~~--~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      +.|-+..  +..+--..|+=|++.||||.|||-+|+++|.+-++.++..
T Consensus       168 ELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrv  216 (406)
T COG1222         168 ELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRV  216 (406)
T ss_pred             cccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEe
Confidence            4455522  4555556788899999999999999999999999888764

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.88  E-value=1.6e-05  Score=62.30  Aligned_cols=28  Identities=25%  Similarity=0.324  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+++.+|.|+|+|||||||++..|...+
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999999987777

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=97.88  E-value=1.1e-05  Score=64.47  Aligned_cols=26  Identities=27%  Similarity=0.621  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ..=|+|.|+||+||||+|++||+-|.
T Consensus       263 aeGILIAG~PGaGKsTFaqAlAefy~  288 (604)
T COG1855         263 AEGILIAGAPGAGKSTFAQALAEFYA  288 (604)
T ss_pred             hcceEEecCCCCChhHHHHHHHHHHH
Confidence            44589999999999999999999884

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.88  E-value=1.3e-05  Score=60.74  Aligned_cols=28  Identities=25%  Similarity=0.399  Sum_probs=25.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+++.+|.|+|+||+||||+...|...|
T Consensus        48 tG~a~viGITG~PGaGKSTli~~L~~~l   75 (323)
T COG1703          48 TGNAHVIGITGVPGAGKSTLIEALGREL   75 (323)
T ss_pred             CCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence            3578899999999999999999999988

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.85  E-value=1.4e-05  Score=59.19  Aligned_cols=31  Identities=32%  Similarity=0.365  Sum_probs=26.2

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-++.|.||+||||||+.+.+|--.
T Consensus        23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4455678899999999999999999997644

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.85  E-value=1.8e-05  Score=60.42  Aligned_cols=29  Identities=21%  Similarity=0.271  Sum_probs=25.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      .-|+|.|+||+|||++|+.|++.+|..++
T Consensus        22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~   50 (262)
T TIGR02640        22 YPVHLRGPAGTGKTTLAMHVARKRDRPVM   50 (262)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence            35778999999999999999999986555

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.84  E-value=6.2e-05  Score=56.46  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSA   52 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~   52 (215)
                      ++.++.|.|+|||||||++..++...   |  ..+++.
T Consensus        24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~   61 (234)
T PRK06067         24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT   61 (234)
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence            57899999999999999999986543   2  455554

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.83  E-value=2.8e-05  Score=51.70  Aligned_cols=31  Identities=32%  Similarity=0.428  Sum_probs=28.1

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +-.+.||.++.+.|+||+|||.+++.||+.+
T Consensus        47 ~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   47 NPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             CCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            3467899999999999999999999999995

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.83  E-value=9.1e-05  Score=57.17  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .-++|.|+||+||||+|+.+++.+
T Consensus        59 ~~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        59 LHMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHH
Confidence            359999999999999998888776

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.83  E-value=2.2e-05  Score=63.33  Aligned_cols=38  Identities=24%  Similarity=0.449  Sum_probs=30.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeE--eeHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLL   56 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~--i~~~~~~   56 (215)
                      ..|.-|++.||||+|||++|+++++.++..+  ++..++.
T Consensus       163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~  202 (389)
T PRK03992        163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV  202 (389)
T ss_pred             CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence            4567799999999999999999999998544  4444443

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.82  E-value=1.6e-05  Score=58.58  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=25.4

Q ss_pred             cccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      -++.-.+.-+++|.||+|||||||...++--
T Consensus        24 v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          24 VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3445567889999999999999999998643

>TIGR00101 ureG urease accessory protein UreG

Probab=97.81  E-value=2.3e-05  Score=57.22  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      |+.|.|.|++||||||+++.+.+.+.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~   26 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALR   26 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence            57899999999999999999988763

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.81  E-value=1.8e-05  Score=54.08  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.|++.|++|||||||+++|....
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~   25 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEE   25 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCC
Confidence            469999999999999999996543

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.81  E-value=2e-05  Score=51.18  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La   42 (215)
                      ....+++|.|++||||||+++.+.
T Consensus        13 ~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          13 YGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHhh
Confidence            446789999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=2.8e-05  Score=62.15  Aligned_cols=29  Identities=24%  Similarity=0.485  Sum_probs=26.8

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      .++.||||+||||+..++|+.++|.+.+.
T Consensus       238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL  266 (457)
T KOG0743|consen  238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL  266 (457)
T ss_pred             ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence            78999999999999999999999987754

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.80  E-value=2.6e-05  Score=45.18  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+.+|+|++||||||+..++.=-+
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            379999999999999999885433

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.80  E-value=2.5e-05  Score=61.33  Aligned_cols=31  Identities=29%  Similarity=0.398  Sum_probs=27.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ...|+|.|+||||||||++.|++.++..++.
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~  192 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW  192 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence            4589999999999999999999999987653

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.80  E-value=2.1e-05  Score=57.40  Aligned_cols=24  Identities=38%  Similarity=0.612  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +|+|+||+||||||++..|...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            689999999999999999888774

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.80  E-value=1.2e-05  Score=63.19  Aligned_cols=39  Identities=36%  Similarity=0.691  Sum_probs=31.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeE--eeHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLL   56 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~--i~~~~~~   56 (215)
                      -..|..+.|.||||+|||.+|+++++.+|..+  ++.++++
T Consensus       145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~  185 (413)
T PLN00020        145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE  185 (413)
T ss_pred             CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh
Confidence            35688899999999999999999999998654  4455554

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.80  E-value=2e-05  Score=56.80  Aligned_cols=30  Identities=23%  Similarity=0.283  Sum_probs=23.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh-----CCeEeeH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF-----GYTHLSA   52 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~   52 (215)
                      .++|.|+||+|||+++..++...     ...+++.
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~   35 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL   35 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence            37899999999999999876654     2456664

A related protein is found in archaea.

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=97.79  E-value=0.00014  Score=60.70  Aligned_cols=34  Identities=29%  Similarity=0.493  Sum_probs=28.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      ..|.-+++.||||+|||++++.++...+..++..
T Consensus        86 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i  119 (495)
T TIGR01241        86 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI  119 (495)
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence            3456699999999999999999999998665543

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.79  E-value=1.5e-05  Score=59.75  Aligned_cols=21  Identities=43%  Similarity=0.734  Sum_probs=18.9

Q ss_pred             EEcCCCCChHHHHHHHHHHhC
Q 028025           26 VLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        26 i~G~~gsGKsTla~~La~~~~   46 (215)
                      |.||+||||||+++.+++.+.
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~   21 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLE   21 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999884

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.78  E-value=2.1e-05  Score=63.52  Aligned_cols=31  Identities=19%  Similarity=0.335  Sum_probs=27.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      .-|+|.||||+|||++|+.|++.++..++..
T Consensus       109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i  139 (412)
T PRK05342        109 SNILLIGPTGSGKTLLAQTLARILDVPFAIA  139 (412)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence            4589999999999999999999998766654

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.78  E-value=3.4e-05  Score=60.22  Aligned_cols=30  Identities=27%  Similarity=0.431  Sum_probs=25.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      ..+..++|.||||+|||++|+.+++.++..
T Consensus        28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~   57 (305)
T TIGR00635        28 EALDHLLLYGPPGLGKTTLAHIIANEMGVN   57 (305)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            345568999999999999999999999753

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.78  E-value=3.1e-05  Score=62.37  Aligned_cols=33  Identities=27%  Similarity=0.479  Sum_probs=28.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ..|.-|+|.||||+|||++++.++..++..++.
T Consensus       177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~  209 (398)
T PTZ00454        177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR  209 (398)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence            456779999999999999999999999865554

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.77  E-value=2.5e-05  Score=56.15  Aligned_cols=30  Identities=20%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ....+..++|.|++|+||||+++.+.+.+.
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            445678999999999999999999888774

>TIGR02012 tigrfam_recA protein RecA

Probab=97.77  E-value=0.00018  Score=56.16  Aligned_cols=83  Identities=14%  Similarity=0.201  Sum_probs=45.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (215)
                      +..++.|.|+|||||||||..++...     ...+++............-..  .....+- .+....+.....+...+.
T Consensus        54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGv--d~~~l~v-~~p~~~eq~l~~~~~li~  130 (321)
T TIGR02012        54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGV--DIDNLLV-SQPDTGEQALEIAETLVR  130 (321)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCC--CHHHeEE-ecCCCHHHHHHHHHHHhh
Confidence            56789999999999999998876655     245676544333221111101  0111111 111123333445555444


Q ss_pred             ccCCCeEEEeC
Q 028025           95 ESGNDKFLIDG  105 (215)
Q Consensus        95 ~~~~~~~iidg  105 (215)
                      ......+|+|.
T Consensus       131 ~~~~~lIVIDS  141 (321)
T TIGR02012       131 SGAVDIIVVDS  141 (321)
T ss_pred             ccCCcEEEEcc
Confidence            44477889996

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=97.77  E-value=0.00014  Score=57.53  Aligned_cols=112  Identities=19%  Similarity=0.206  Sum_probs=67.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-ND   99 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   99 (215)
                      ..++++.|++|||||++...|.+. +..+++..+..+..   ++.++...    .  ..-.+..+...+...+.... ..
T Consensus       141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~----~--~qpsQ~~Fe~~l~~~l~~~~~~~  210 (345)
T PRK11784        141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLG----G--PQPSQKDFENLLAEALLKLDPAR  210 (345)
T ss_pred             CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCC----C--CCcchHHHHHHHHHHHHcCCCCC
Confidence            445789999999999999999654 77788775544432   33333111    0  11123444666666666554 57


Q ss_pred             eEEEeCCCCCH---HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025          100 KFLIDGFPRNE---ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus       100 ~~iidg~~~~~---~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      .+++++--..+   .....+.. . +.-...|++++|.+...+|+.+.
T Consensus       211 ~i~vE~Es~~IG~~~lP~~l~~-~-m~~~~~v~i~~~~e~Rv~~l~~~  256 (345)
T PRK11784        211 PIVVEDESRRIGRVHLPEALYE-A-MQQAPIVVVEAPLEERVERLLED  256 (345)
T ss_pred             eEEEEeccccccCccCCHHHHH-H-HhhCCEEEEECCHHHHHHHHHHH
Confidence            78888522111   11111111 1 11123789999999999999876

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.77  E-value=3.2e-05  Score=61.91  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=28.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ..|.-++|.||||+|||++|+.+++.++..++.
T Consensus       154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~  186 (364)
T TIGR01242       154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR  186 (364)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhCCCCEEe
Confidence            346679999999999999999999999865554

Many proteins may score above the trusted cutoff because an internal

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=97.77  E-value=0.0019  Score=52.51  Aligned_cols=39  Identities=21%  Similarity=0.252  Sum_probs=30.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh-----C--CeEeeHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLLRAE   59 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~-----~--~~~i~~~~~~~~~   59 (215)
                      ...++|.|++|+|||+|++++++.+     +  ..+++..++....
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~  181 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDF  181 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHH
Confidence            3458999999999999999998876     2  4577777766554

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.76  E-value=2.3e-05  Score=61.70  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=27.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      +...-.++-||||+||||+|+.++...+..+..
T Consensus        46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~   78 (436)
T COG2256          46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEA   78 (436)
T ss_pred             CCCceeEEECCCCCCHHHHHHHHHHhhCCceEE
Confidence            345567899999999999999999999865544

>PRK12377 putative replication protein; Provisional

Probab=97.76  E-value=0.0016  Score=49.22  Aligned_cols=39  Identities=23%  Similarity=0.267  Sum_probs=30.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAE   59 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~   59 (215)
                      ..-++|.|+||+|||.||.++++.+.     ..+++..+++...
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l  144 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL  144 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence            35689999999999999999999882     3456666665543

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.75  E-value=0.0015  Score=55.53  Aligned_cols=27  Identities=19%  Similarity=0.257  Sum_probs=25.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      +..++|+|++|+||||+++.|++.+++
T Consensus        38 pHA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         38 HHAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            567899999999999999999999987

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.75  E-value=0.0015  Score=54.79  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      +..+++.||+|+||||+|+.|++.+++
T Consensus        38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         38 HHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            456899999999999999999999875

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=3.2e-05  Score=65.12  Aligned_cols=33  Identities=24%  Similarity=0.461  Sum_probs=28.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      .+.+++++.||||+|||+|++.+|+.+|-.++.
T Consensus       348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR  380 (782)
T COG0466         348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR  380 (782)
T ss_pred             CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE
Confidence            467899999999999999999999999855443

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.75  E-value=0.00024  Score=55.50  Aligned_cols=81  Identities=17%  Similarity=0.284  Sum_probs=46.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHHHHHHHc--CCCcHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKS--GSENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (215)
                      +..++.|.|||||||||||..++...   +  ..+++...-+......  +...    ...+- .+....+....++...
T Consensus        54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~----~~l~v-~~p~~~eq~l~i~~~l  128 (325)
T cd00983          54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDL----DNLLI-SQPDTGEQALEIADSL  128 (325)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCH----HHhee-cCCCCHHHHHHHHHHH
Confidence            57789999999999999999987554   2  5666654333222111  1111    11111 1112233345555555


Q ss_pred             HHccCCCeEEEeC
Q 028025           93 MEESGNDKFLIDG  105 (215)
Q Consensus        93 ~~~~~~~~~iidg  105 (215)
                      +.......+|+|.
T Consensus       129 i~s~~~~lIVIDS  141 (325)
T cd00983         129 VRSGAVDLIVVDS  141 (325)
T ss_pred             HhccCCCEEEEcc
Confidence            5444477889996

RecA couples ATP hydrolysis to DNA strand exchange.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.75  E-value=3.6e-05  Score=56.74  Aligned_cols=33  Identities=24%  Similarity=0.355  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~   54 (215)
                      .|..++|.|+||+||||+|+.|+.  ...+++.|.
T Consensus        11 ~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~   43 (220)
T TIGR01618        11 IPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM   43 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence            357799999999999999999963  345566644

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.74  E-value=3.7e-05  Score=60.64  Aligned_cols=30  Identities=30%  Similarity=0.417  Sum_probs=26.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeE
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~   49 (215)
                      .+..++|.||||+||||+|+.+++.++..+
T Consensus        50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~   79 (328)
T PRK00080         50 ALDHVLLYGPPGLGKTTLANIIANEMGVNI   79 (328)
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence            345689999999999999999999998643

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.74  E-value=3.4e-05  Score=53.00  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++|.|+|+.+|||||+++.|.+++
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            479999999999999999998888

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=0.00011  Score=62.92  Aligned_cols=129  Identities=16%  Similarity=0.172  Sum_probs=69.3

Q ss_pred             cccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH--HHHHHHHHHcC-CCcHHHHHH---------------HH-
Q 028025           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA--GDLLRAEIKSG-SENGTMIQN---------------MI-   74 (215)
Q Consensus        14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~--~~~~~~~~~~~-~~~~~~~~~---------------~~-   74 (215)
                      ..+-..-|.=++|+||||+|||-||+++|-+-|.++++.  .+++.-....+ +...+.+..               .+ 
T Consensus       337 ~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~  416 (774)
T KOG0731|consen  337 QELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVG  416 (774)
T ss_pred             HHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEeccccccc
Confidence            344344577899999999999999999999999877774  33333221111 111111111               00 


Q ss_pred             -Hc-C--CCCCHHHHHHHHHHHHHccC----CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhh
Q 028025           75 -KE-G--KIVPSEVTIKLLQKAMEESG----NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (215)
Q Consensus        75 -~~-~--~~~~~~~~~~~~~~~~~~~~----~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~  143 (215)
                       .. |  ....+....+-+.+.+.+.+    ...||+.+.....+.++.-.- +...+|..|+++.|...-...+-+
T Consensus       417 ~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~all-rpGRfdr~i~i~~p~~~~r~~i~~  492 (774)
T KOG0731|consen  417 RKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALL-RPGRFDRQIQIDLPDVKGRASILK  492 (774)
T ss_pred             ccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhc-CCCccccceeccCCchhhhHHHHH
Confidence             01 1  11222222333444443332    445666653222222222221 566788899999988776666654

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.74  E-value=5e-05  Score=63.00  Aligned_cols=86  Identities=14%  Similarity=0.268  Sum_probs=48.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCC---------CCHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI---------VPSEVT   85 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~   85 (215)
                      +..+++|.|+||+||||++..++...   |  ..+++.++-..+........+..+..+...+..         ...+..
T Consensus       262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~  341 (484)
T TIGR02655       262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDH  341 (484)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence            57799999999999999999988766   2  456664333222222212222222333333211         111233


Q ss_pred             HHHHHHHHHccCCCeEEEeC
Q 028025           86 IKLLQKAMEESGNDKFLIDG  105 (215)
Q Consensus        86 ~~~~~~~~~~~~~~~~iidg  105 (215)
                      ...+...+.....+.+++|.
T Consensus       342 ~~~i~~~i~~~~~~~vvIDs  361 (484)
T TIGR02655       342 LQIIKSEIADFKPARIAIDS  361 (484)
T ss_pred             HHHHHHHHHHcCCCEEEEcC
Confidence            44445555554567788886

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.74  E-value=3.7e-05  Score=54.83  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=25.9

Q ss_pred             CC-eEEEEEcCCCCChHHHHHHHHHHh----CCeEeeH
Q 028025           20 KP-TVVFVLGGPGSGKGTQCANIVEHF----GYTHLSA   52 (215)
Q Consensus        20 ~~-~~I~i~G~~gsGKsTla~~La~~~----~~~~i~~   52 (215)
                      ++ .+|.+.||||||||||..++.+.+    ...++..
T Consensus        11 ~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~   48 (202)
T COG0378          11 RPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG   48 (202)
T ss_pred             CceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence            44 789999999999999988877766    4555544

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=97.73  E-value=3e-05  Score=62.49  Aligned_cols=30  Identities=17%  Similarity=0.323  Sum_probs=26.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ..|+|.||||+|||++|+.|++.++..+..
T Consensus       117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~  146 (413)
T TIGR00382       117 SNILLIGPTGSGKTLLAQTLARILNVPFAI  146 (413)
T ss_pred             ceEEEECCCCcCHHHHHHHHHHhcCCCeEE
Confidence            479999999999999999999999865553

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.72  E-value=0.0017  Score=53.77  Aligned_cols=27  Identities=26%  Similarity=0.434  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      +.-++++||+|+||||+|+.+|+.+++
T Consensus        35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC   61 (491)
T PRK14964         35 PQSILLVGASGVGKTTCARIISLCLNC   61 (491)
T ss_pred             CceEEEECCCCccHHHHHHHHHHHHcC
Confidence            457999999999999999999998875

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.72  E-value=4.2e-05  Score=59.82  Aligned_cols=28  Identities=36%  Similarity=0.619  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..++.+|++.||+||||||++..|+..+
T Consensus       111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        111 EKKPFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            3568899999999999999999999887

>PRK04195 replication factor C large subunit; Provisional

Probab=97.72  E-value=3.5e-05  Score=63.94  Aligned_cols=31  Identities=19%  Similarity=0.563  Sum_probs=27.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      +..++|.||||+||||+|+.|++.+++.++.
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~ie   69 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIE   69 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            6789999999999999999999999876654

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.72  E-value=0.0011  Score=58.08  Aligned_cols=28  Identities=14%  Similarity=0.202  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      +..++|+|++|+||||+|+.|++.+++.
T Consensus        38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         38 HHAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            5678999999999999999999999864

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.71  E-value=3e-05  Score=58.29  Aligned_cols=31  Identities=26%  Similarity=0.345  Sum_probs=26.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +.-.+..++.|.||.|||||||.+.|+.-+.
T Consensus        23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~   53 (258)
T COG1120          23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLK   53 (258)
T ss_pred             EEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            3445688999999999999999999988663

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.71  E-value=6e-05  Score=56.10  Aligned_cols=39  Identities=21%  Similarity=0.231  Sum_probs=30.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL   56 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~   56 (215)
                      ...+..++|.|++|+|||++++.+++...     +.++++.++.
T Consensus        35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~   78 (226)
T TIGR03420        35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence            44567899999999999999999998763     4566665543

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.71  E-value=4.8e-05  Score=58.22  Aligned_cols=28  Identities=32%  Similarity=0.576  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..++.+|+++|++|+||||++..||..+
T Consensus        69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l   96 (272)
T TIGR00064        69 ENKPNVILFVGVNGVGKTTTIAKLANKL   96 (272)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            3567899999999999999999999877

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.70  E-value=0.00091  Score=53.24  Aligned_cols=28  Identities=18%  Similarity=0.355  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..++.+|+|.||+||||||++..|+..+
T Consensus       203 ~~~~~ii~lvGptGvGKTTt~akLA~~l  230 (407)
T PRK12726        203 LSNHRIISLIGQTGVGKTTTLVKLGWQL  230 (407)
T ss_pred             ecCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999999999766

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=97.70  E-value=5e-05  Score=61.77  Aligned_cols=33  Identities=30%  Similarity=0.468  Sum_probs=27.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ..|.-++|.||||+|||++|++++..++..++.
T Consensus       215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~  247 (438)
T PTZ00361        215 KPPKGVILYGPPGTGKTLLAKAVANETSATFLR  247 (438)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence            456679999999999999999999999765443

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.70  E-value=0.00019  Score=54.65  Aligned_cols=33  Identities=12%  Similarity=0.130  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSA   52 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~   52 (215)
                      +..++.|.|+||+||||+|..++-+.     ...+++.
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~   72 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV   72 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            57789999999999999999986654     2455664

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.70  E-value=4.1e-05  Score=54.61  Aligned_cols=31  Identities=29%  Similarity=0.455  Sum_probs=25.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAG   53 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~   53 (215)
                      ++++.|+|||||||++..++..+   +  ..+++.|
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D   37 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD   37 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            68999999999999999998876   3  3455554

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.68  E-value=0.0019  Score=52.33  Aligned_cols=28  Identities=18%  Similarity=0.119  Sum_probs=25.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      +..+++.||+|+||||+|+.+|+.+.+.
T Consensus        38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955         38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            5568999999999999999999999763

>PRK10646 ADP-binding protein; Provisional

Probab=97.68  E-value=5.8e-05  Score=52.28  Aligned_cols=27  Identities=30%  Similarity=0.580  Sum_probs=25.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      +.+|++.|.-||||||+++.+++.+|.
T Consensus        28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         28 ATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            568999999999999999999999985

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.68  E-value=5.5e-05  Score=51.75  Aligned_cols=29  Identities=34%  Similarity=0.491  Sum_probs=26.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      ..+.+|++.|.-||||||+++.+++.++.
T Consensus        23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802          23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence            46789999999999999999999999983

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00036  Score=53.25  Aligned_cols=41  Identities=27%  Similarity=0.451  Sum_probs=32.2

Q ss_pred             CCeE-EEEEcCCCCChHHHHHHHHHHhCCeEe--eHHHHHHHHH
Q 028025           20 KPTV-VFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEI   60 (215)
Q Consensus        20 ~~~~-I~i~G~~gsGKsTla~~La~~~~~~~i--~~~~~~~~~~   60 (215)
                      +|+. |++.||||.|||.||+++|-.-|-.++  +..|++..++
T Consensus       164 ~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm  207 (439)
T KOG0739|consen  164 KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM  207 (439)
T ss_pred             CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence            3554 999999999999999999999885444  4567776653

>PRK13695 putative NTPase; Provisional

Probab=97.68  E-value=4.5e-05  Score=54.47  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      |.|+|+|++||||||+++.++..+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999987765

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.68  E-value=4.5e-05  Score=56.07  Aligned_cols=31  Identities=23%  Similarity=0.426  Sum_probs=26.8

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +....+++|.+.|++||||||+.+.+.+.++
T Consensus        17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             hhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4455789999999999999999999988754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=4.2e-05  Score=64.44  Aligned_cols=38  Identities=21%  Similarity=0.413  Sum_probs=31.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC--eEeeHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLL   56 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~--~~i~~~~~~   56 (215)
                      .+++++++.||||+|||++++.+|..+|-  .-++.|-+.
T Consensus       436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~t  475 (906)
T KOG2004|consen  436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMT  475 (906)
T ss_pred             CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccc
Confidence            46899999999999999999999999984  455555443

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.0004  Score=57.00  Aligned_cols=45  Identities=24%  Similarity=0.400  Sum_probs=35.7

Q ss_pred             ccccccccccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025            5 VETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus         5 ~~~p~~~~~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ..+|.+  +..+-..=|+=|+++||||.|||-||+++|-+-+.+++.
T Consensus       323 LkdP~k--ftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~  367 (752)
T KOG0734|consen  323 LKDPTK--FTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFY  367 (752)
T ss_pred             hcCcHH--hhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEe
Confidence            456777  444544447789999999999999999999998876665

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=97.67  E-value=0.0012  Score=54.17  Aligned_cols=40  Identities=20%  Similarity=0.296  Sum_probs=31.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh-------CCeEeeHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEI   60 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~-------~~~~i~~~~~~~~~~   60 (215)
                      +.-++|.|++|+|||.|+++++..+       ...+++..+++....
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~  176 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV  176 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence            3459999999999999999999875       246778877766654

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.67  E-value=5.1e-05  Score=64.01  Aligned_cols=34  Identities=26%  Similarity=0.469  Sum_probs=30.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ++..++.+++||||.||||||+.+|++-||.++.
T Consensus       323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvE  356 (877)
T KOG1969|consen  323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVE  356 (877)
T ss_pred             CCccceEEeecCCCCChhHHHHHHHHhcCceEEE
Confidence            3456789999999999999999999999998886

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.67  E-value=4.4e-05  Score=54.32  Aligned_cols=32  Identities=28%  Similarity=0.359  Sum_probs=27.1

Q ss_pred             cccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      -++.-.+.-+++++||+||||||+.+.+....
T Consensus        21 vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          21 VSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             ceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence            34556678899999999999999999987766

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.67  E-value=0.00015  Score=53.18  Aligned_cols=25  Identities=40%  Similarity=0.747  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++--+|+|||||||||-+.-+++-+
T Consensus         2 ~fgqvVIGPPgSGKsTYc~g~~~fl   26 (290)
T KOG1533|consen    2 PFGQVVIGPPGSGKSTYCNGMSQFL   26 (290)
T ss_pred             CcceEEEcCCCCCccchhhhHHHHH
Confidence            4557899999999999999887766

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.67  E-value=0.0001  Score=55.04  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=29.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLL   56 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~~~~   56 (215)
                      ...++|.|++|+|||++++.++...     ...+++..++.
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~   82 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL   82 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence            4568999999999999999999887     56777765543

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.67  E-value=4.6e-05  Score=58.27  Aligned_cols=26  Identities=23%  Similarity=0.479  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +..++|.|++||||||+++.+++.+.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            45789999999999999999999875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.66  E-value=3.9e-05  Score=56.60  Aligned_cols=29  Identities=21%  Similarity=0.300  Sum_probs=24.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .-.++-++.|.|++||||||+++.|+--.
T Consensus        29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~   57 (252)
T COG1124          29 EIERGETLGIVGESGSGKSTLARLLAGLE   57 (252)
T ss_pred             EecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence            33567889999999999999999996544

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.66  E-value=5.2e-05  Score=50.39  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .|+|.|++|||||||.+.|+...
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC
Confidence            48999999999999999997654

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.00056  Score=57.11  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=29.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      ..+..+++.||||+|||.+|++++...+..+++.
T Consensus       274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v  307 (494)
T COG0464         274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISV  307 (494)
T ss_pred             CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence            4566899999999999999999999887766664

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.65  E-value=7e-05  Score=53.29  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      ..+++.||+|+|||.+|+.|++.+..
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46899999999999999999999984

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=97.65  E-value=0.005  Score=50.89  Aligned_cols=146  Identities=16%  Similarity=0.170  Sum_probs=82.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (215)
                      ...+.+|++.|..||||....+.|.+.++   +.+.+.+          .+..              .+.....+.+...
T Consensus       296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~----------~Pt~--------------~E~~~~~lwRf~~  351 (493)
T TIGR03708       296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIA----------APTD--------------EEKAQHYLWRFWR  351 (493)
T ss_pred             CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCC----------CcCH--------------HHHcCcHHHHHHH
Confidence            34688999999999999999999999985   4444321          1111              1111222222222


Q ss_pred             ccC--CCeEEEeCCCCC-------------HHHHHHHHHh--------cCCCCcEEEEEecCHHHHHHHHhhc-cCC--C
Q 028025           95 ESG--NDKFLIDGFPRN-------------EENRAAFEAV--------TKIEPEFVLFFDCSEEEMERRILNR-NQG--R  148 (215)
Q Consensus        95 ~~~--~~~~iidg~~~~-------------~~~~~~~~~~--------~~~~~~~~i~L~~~~e~~~~R~~~r-~~~--~  148 (215)
                      ..+  |...|+|+....             .++...+.++        .....-+-+||.+|.++..+|+..| ..+  .
T Consensus       352 ~lP~~G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k~  431 (493)
T TIGR03708       352 HIPRRGRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTPFKR  431 (493)
T ss_pred             hCCCCCeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCCccC
Confidence            222  788888853322             1222222221        2334446899999999999999998 222  1


Q ss_pred             CCCcHHHHH--HHHHHHhhcchhHHHHHHh-cCcEEEEcCCC
Q 028025          149 EDDNVETIR--KRFKVFLESSLPVVQYYEA-KGKVRKIDAAK  187 (215)
Q Consensus       149 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~id~~~  187 (215)
                      -...++++.  +++..|......++..-.. ..+-++|+++.
T Consensus       432 WK~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~d  473 (493)
T TIGR03708       432 YKITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEAND  473 (493)
T ss_pred             CcCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCC
Confidence            222334433  3444555554444332222 24788888863

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PHA02244 ATPase-like protein

Probab=97.65  E-value=5.9e-05  Score=59.52  Aligned_cols=34  Identities=29%  Similarity=0.430  Sum_probs=28.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~   54 (215)
                      ..-|+|.||||+|||++|+.++..++..++....
T Consensus       119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~  152 (383)
T PHA02244        119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA  152 (383)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence            3447889999999999999999999987776543

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.64  E-value=5.9e-05  Score=54.69  Aligned_cols=28  Identities=25%  Similarity=0.432  Sum_probs=23.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      -.+..+-.++||+||||||+.+.| ++++
T Consensus        30 i~~~~VTAlIGPSGcGKST~LR~l-NRmn   57 (253)
T COG1117          30 IPKNKVTALIGPSGCGKSTLLRCL-NRMN   57 (253)
T ss_pred             ccCCceEEEECCCCcCHHHHHHHH-Hhhc
Confidence            346778999999999999999998 6664

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=5e-05  Score=55.59  Aligned_cols=37  Identities=35%  Similarity=0.444  Sum_probs=30.0

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ++.-...-+.+|.||.|||||||+..|+-+-+|.+..
T Consensus        24 nL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~   60 (251)
T COG0396          24 NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTE   60 (251)
T ss_pred             ceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEec
Confidence            4445567889999999999999999998887765443

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.64  E-value=0.00018  Score=59.81  Aligned_cols=24  Identities=21%  Similarity=0.242  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +...++|.|+|||||||+|..++-
T Consensus        20 ~g~~~Li~G~pGsGKT~la~qfl~   43 (484)
T TIGR02655        20 IGRSTLVSGTSGTGKTLFSIQFLY   43 (484)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            578899999999999999999743

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.63  E-value=0.0011  Score=56.31  Aligned_cols=28  Identities=18%  Similarity=0.235  Sum_probs=25.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      +..++++||+|+||||+|+.||+.+++.
T Consensus        37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~   64 (702)
T PRK14960         37 HHAYLFTGTRGVGKTTIARILAKCLNCE   64 (702)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            6688999999999999999999999863

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=97.63  E-value=0.0028  Score=53.59  Aligned_cols=27  Identities=15%  Similarity=0.183  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      +..+++.||+|+||||+|+.+|+.+.+
T Consensus        38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C   64 (605)
T PRK05896         38 THAYIFSGPRGIGKTSIAKIFAKAINC   64 (605)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            567999999999999999999999964

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.63  E-value=0.0028  Score=53.94  Aligned_cols=28  Identities=18%  Similarity=0.224  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      -+..++++|++|+||||+|+.|++.+++
T Consensus        37 l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC   64 (618)
T PRK14951         37 LHHAYLFTGTRGVGKTTVSRILAKSLNC   64 (618)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3567899999999999999999999986

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.63  E-value=2.8e-05  Score=53.10  Aligned_cols=27  Identities=30%  Similarity=0.421  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+..+++|.|++|||||||.+.|+...
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEEccCCCccccceeeecccc
Confidence            456789999999999999999997765

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=97.63  E-value=5.7e-05  Score=60.53  Aligned_cols=28  Identities=29%  Similarity=0.363  Sum_probs=25.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .+|.+|+|+|++|||||||+..|...+.
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~   30 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLS   30 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            3678999999999999999999998885

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.63  E-value=4.3e-05  Score=59.72  Aligned_cols=31  Identities=26%  Similarity=0.337  Sum_probs=25.2

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-...-+++|.||+||||||+.+.+|--.
T Consensus        23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444567789999999999999999997544

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.63  E-value=6.4e-05  Score=57.93  Aligned_cols=27  Identities=30%  Similarity=0.518  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .++.+|+|.||+||||||++..|+..+
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            357799999999999999999998876

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.62  E-value=6e-05  Score=53.47  Aligned_cols=24  Identities=29%  Similarity=0.627  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +++|.|++|||||++|..++...+
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~   24 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELG   24 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcC
Confidence            478999999999999999988755

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.62  E-value=7e-05  Score=60.96  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=27.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ...+..++|.||||+||||+|+.+++..+..++.
T Consensus        33 ~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~   66 (413)
T PRK13342         33 AGRLSSMILWGPPGTGKTTLARIIAGATDAPFEA   66 (413)
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            3455578889999999999999999998755443

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=97.62  E-value=0.0014  Score=48.61  Aligned_cols=40  Identities=25%  Similarity=0.293  Sum_probs=31.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh-------CCeEeeHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEI   60 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~-------~~~~i~~~~~~~~~~   60 (215)
                      ...++|.|++|+|||.|.++++..+       ...+++..++.....
T Consensus        34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~   80 (219)
T PF00308_consen   34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFA   80 (219)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHH
Confidence            3457999999999999999998775       256888878776654

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.62  E-value=0.00019  Score=53.72  Aligned_cols=26  Identities=15%  Similarity=0.371  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..++.|.|+||+||||+|..++..+
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~~~~   48 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLAYGF   48 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            35589999999999999986654433

>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE

Probab=97.62  E-value=0.0047  Score=46.98  Aligned_cols=27  Identities=30%  Similarity=0.466  Sum_probs=19.1

Q ss_pred             CcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025          124 PEFVLFFDCSEEEMERRILNRNQGREDDN  152 (215)
Q Consensus       124 ~~~~i~L~~~~e~~~~R~~~r~~~~~~~~  152 (215)
                      -+-+|.++.+.++..+|+.+|  +|+++.
T Consensus       146 G~niVl~~L~~~E~~rRl~~R--~R~gE~  172 (281)
T PF00693_consen  146 GTNIVLMTLPEEEHLRRLKAR--GRPGER  172 (281)
T ss_dssp             TEEEEEEE--HHHHHHHHHHT--STTT-S
T ss_pred             CCEEEEEeCCHHHHHHHHHHc--CCCccc
Confidence            344788899999999999999  666554

The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.62  E-value=5.9e-05  Score=54.52  Aligned_cols=28  Identities=25%  Similarity=0.446  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .....++|.|++||||||+.+.|...+.
T Consensus        23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          23 EARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            3567899999999999999999987663

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.62  E-value=4.8e-05  Score=54.36  Aligned_cols=28  Identities=32%  Similarity=0.398  Sum_probs=23.8

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHH
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIV   42 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La   42 (215)
                      ++.-....+++|.||+|||||||.+.+.
T Consensus        15 sl~i~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          15 DVSIPLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            3445677899999999999999999884

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]

Probab=97.62  E-value=0.0012  Score=53.02  Aligned_cols=155  Identities=14%  Similarity=0.251  Sum_probs=87.5

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC-----eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHH---H
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI---K   87 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~   87 (215)
                      .-++.+.+|++.|.|++|||.++..|.+.++|     ..++.+.+-+........ ...+.-...++..+..+...   .
T Consensus        23 ~~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s-~~ff~p~n~~~~~lr~~~a~~~l~  101 (438)
T KOG0234|consen   23 LFMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDS-EPFFLPDNAEASKLRKQLALLALN  101 (438)
T ss_pred             cccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhccccc-ccccccCChhhhhhhHHHHHHHhh
Confidence            44667889999999999999999999999875     445556544444322111 11110001111222222222   2


Q ss_pred             HHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcE-EEEE--ecCHHHHHHHHhh-c-------cCCCCCCcHHHH
Q 028025           88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF-VLFF--DCSEEEMERRILN-R-------NQGREDDNVETI  156 (215)
Q Consensus        88 ~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~-~i~L--~~~~e~~~~R~~~-r-------~~~~~~~~~~~~  156 (215)
                      -+..-+...++++.|.|+.+.+...++.+..+....+.. ++|+  -|++..++.+... +       ..-..+...+++
T Consensus       102 D~~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~~~e~a~~df  181 (438)
T KOG0234|consen  102 DLLHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGKDQEEALKDF  181 (438)
T ss_pred             hHHHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCCCHHHHHHHH
Confidence            222333344599999999888887777666532112222 3333  3455555555443 4       111223346677


Q ss_pred             HHHHHHHhhcchhHH
Q 028025          157 RKRFKVFLESSLPVV  171 (215)
Q Consensus       157 ~~~~~~~~~~~~~~~  171 (215)
                      .+|+..|.....|+.
T Consensus       182 l~ri~~ye~~YePld  196 (438)
T KOG0234|consen  182 LKRIRNYEKYYEPLD  196 (438)
T ss_pred             HHHHHhhhhccCcCC
Confidence            888888888877775

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=97.62  E-value=5.6e-05  Score=52.90  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +|.|.|++||||||++..|.+.+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999876

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.62  E-value=5e-05  Score=55.05  Aligned_cols=30  Identities=23%  Similarity=0.391  Sum_probs=25.0

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-....+++|.|++|||||||++.|+-.+
T Consensus        13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        13 FAAERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567799999999999999999997544

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.61  E-value=0.0033  Score=52.57  Aligned_cols=28  Identities=18%  Similarity=0.230  Sum_probs=25.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      +..+++.||+|+||||+|+.|++.+++.
T Consensus        38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (509)
T PRK14958         38 HHAYLFTGTRGVGKTTISRILAKCLNCE   65 (509)
T ss_pred             CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            5678999999999999999999999763

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=97.61  E-value=0.0092  Score=49.10  Aligned_cols=38  Identities=16%  Similarity=0.210  Sum_probs=29.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAE   59 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~~~~~~~   59 (215)
                      .-++|.|++|+|||+|+++++..+     ...+++.+++....
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~  184 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHL  184 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHH
Confidence            347899999999999999999876     24667776655443

>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]

Probab=97.61  E-value=0.0038  Score=47.81  Aligned_cols=84  Identities=17%  Similarity=0.197  Sum_probs=51.5

Q ss_pred             ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc-CCCcHHHHHHHHHcCCCCCHHHHHHHHHH
Q 028025           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQK   91 (215)
Q Consensus        13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (215)
                      +.+-.+.||.++.+.|.+|+||+-+++.+|+++--..... +++...... .-+....+..+-.        .....+..
T Consensus       102 ~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S-~~V~~fvat~hFP~~~~ie~Yk~--------eL~~~v~~  172 (344)
T KOG2170|consen  102 WANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS-PFVHHFVATLHFPHASKIEDYKE--------ELKNRVRG  172 (344)
T ss_pred             hcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc-hhHHHhhhhccCCChHHHHHHHH--------HHHHHHHH
Confidence            3445578999999999999999999999999884333333 344443333 2222222222211        12344445


Q ss_pred             HHHccCCCeEEEeC
Q 028025           92 AMEESGNDKFLIDG  105 (215)
Q Consensus        92 ~~~~~~~~~~iidg  105 (215)
                      .+.......+|+|-
T Consensus       173 ~v~~C~rslFIFDE  186 (344)
T KOG2170|consen  173 TVQACQRSLFIFDE  186 (344)
T ss_pred             HHHhcCCceEEech
Confidence            55555577888885

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.60  E-value=7.6e-05  Score=61.08  Aligned_cols=31  Identities=23%  Similarity=0.532  Sum_probs=28.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      +..+.+|+||+||||||..+.|++.+|+.++
T Consensus       109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~  139 (634)
T KOG1970|consen  109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLI  139 (634)
T ss_pred             CceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence            4568899999999999999999999998766

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.60  E-value=5.5e-05  Score=52.99  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +++|.|+||+||||++..++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            37899999999999999998877

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=97.60  E-value=0.0028  Score=54.79  Aligned_cols=28  Identities=18%  Similarity=0.219  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      +..++|+|++|+||||+++.|++.+++.
T Consensus        38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe   65 (830)
T PRK07003         38 HHAYLFTGTRGVGKTTLSRIFAKALNCE   65 (830)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            5678899999999999999999999863

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.59  E-value=5.3e-05  Score=56.13  Aligned_cols=30  Identities=27%  Similarity=0.315  Sum_probs=25.6

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-....++.|.|++|||||||++.|+-.+
T Consensus        25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            444567899999999999999999998655

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.59  E-value=6.3e-05  Score=57.60  Aligned_cols=30  Identities=27%  Similarity=0.440  Sum_probs=25.6

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +...+..+|.|.|+||||||||+..+.+.+
T Consensus        99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l  128 (290)
T PRK10463         99 FAARKQLVLNLVSSPGSGKTTLLTETLMRL  128 (290)
T ss_pred             HHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            334568899999999999999999888876

>PRK09354 recA recombinase A; Provisional

Probab=97.59  E-value=0.00046  Score=54.43  Aligned_cols=81  Identities=17%  Similarity=0.277  Sum_probs=46.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeHHHHHHHHHHc--CCCcHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKS--GSENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (215)
                      +..++.|.|++||||||||..++...     ...+++...-+......  +..    +...+.. +....+....++...
T Consensus        59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvd----ld~lli~-qp~~~Eq~l~i~~~l  133 (349)
T PRK09354         59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVD----IDNLLVS-QPDTGEQALEIADTL  133 (349)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCC----HHHeEEe-cCCCHHHHHHHHHHH
Confidence            57789999999999999999987554     25666654433322111  111    1111111 122233344555555


Q ss_pred             HHccCCCeEEEeC
Q 028025           93 MEESGNDKFLIDG  105 (215)
Q Consensus        93 ~~~~~~~~~iidg  105 (215)
                      +.......+|+|.
T Consensus       134 i~s~~~~lIVIDS  146 (349)
T PRK09354        134 VRSGAVDLIVVDS  146 (349)
T ss_pred             hhcCCCCEEEEeC
Confidence            5444477899997

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.59  E-value=5.5e-05  Score=55.98  Aligned_cols=30  Identities=30%  Similarity=0.418  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-...-+++|.|++|||||||++.|+-.+
T Consensus        24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        24 FHITKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344567899999999999999999998755

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.58  E-value=8.6e-05  Score=52.11  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .+|.|+|++||||||++..|...+.
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~   26 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALS   26 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999873

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.58  E-value=8.9e-05  Score=57.72  Aligned_cols=27  Identities=26%  Similarity=0.343  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.+.+|.|.|+|||||||++..|+..+
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            568899999999999999999988876

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.58  E-value=5.7e-05  Score=55.80  Aligned_cols=30  Identities=27%  Similarity=0.442  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++|||||||++.|+-.+
T Consensus        22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            444567789999999999999999998754

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.57  E-value=0.00011  Score=55.06  Aligned_cols=34  Identities=6%  Similarity=0.183  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGD   54 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~   54 (215)
                      ...++|.||+|+|||++++.++....     ..+++.++
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            35789999999999999999998764     35666644

>PRK13768 GTPase; Provisional

Probab=97.57  E-value=8.1e-05  Score=56.48  Aligned_cols=25  Identities=36%  Similarity=0.561  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +++|++.|++||||||++..++..+
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l   26 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWL   26 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHH
Confidence            5789999999999999999988777

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.57  E-value=6e-05  Score=55.56  Aligned_cols=30  Identities=33%  Similarity=0.460  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-....++.|.|++|||||||++.|+-.+
T Consensus        22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            344567899999999999999999998654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=97.57  E-value=0.0022  Score=54.72  Aligned_cols=28  Identities=18%  Similarity=0.222  Sum_probs=25.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      +..++|+|++|+||||+|+.|++.+++.
T Consensus        38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~   65 (647)
T PRK07994         38 HHAYLFSGTRGVGKTTIARLLAKGLNCE   65 (647)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence            4568999999999999999999999863

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.57  E-value=0.00016  Score=62.87  Aligned_cols=33  Identities=24%  Similarity=0.419  Sum_probs=27.2

Q ss_pred             CCCe-EEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           19 KKPT-VVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        19 ~~~~-~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      .+|. .+++.||||+|||++|+.||+.++..++.
T Consensus       485 ~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~  518 (758)
T PRK11034        485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR  518 (758)
T ss_pred             CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEE
Confidence            3443 58999999999999999999999765543

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.57  E-value=7e-05  Score=62.29  Aligned_cols=28  Identities=21%  Similarity=0.488  Sum_probs=24.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .+..++++.||||+|||||++.|++.+.
T Consensus       101 ~~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455        101 EKKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHHH
Confidence            3557999999999999999999999774

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.57  E-value=6.2e-05  Score=55.45  Aligned_cols=31  Identities=29%  Similarity=0.387  Sum_probs=25.9

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-..+-++.|.|++|||||||++.|+-.+
T Consensus        20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444577899999999999999999998654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.57  E-value=6.4e-05  Score=59.11  Aligned_cols=31  Identities=32%  Similarity=0.377  Sum_probs=25.2

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-++.+.||+||||||+.+.+|--.
T Consensus        25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe   55 (352)
T COG3842          25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE   55 (352)
T ss_pred             eeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444567789999999999999999997533

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=97.57  E-value=0.0017  Score=54.85  Aligned_cols=38  Identities=21%  Similarity=0.223  Sum_probs=30.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh-------CCeEeeHHHHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEI   60 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~-------~~~~i~~~~~~~~~~   60 (215)
                      .++|.|++|+|||.|+++++...       ...+++..+++....
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~  360 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI  360 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH
Confidence            48999999999999999999876       246788877766554

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.56  E-value=6e-05  Score=55.30  Aligned_cols=30  Identities=17%  Similarity=0.271  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-....++.|.|++|||||||.+.|+-.+
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          21 LDLYAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            444567899999999999999999997754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.56  E-value=6.6e-05  Score=55.44  Aligned_cols=31  Identities=29%  Similarity=0.298  Sum_probs=25.7

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-....+++|.|++|||||||++.|+-.+
T Consensus        20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444567899999999999999999998654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.56  E-value=6.4e-05  Score=55.85  Aligned_cols=30  Identities=33%  Similarity=0.469  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++|||||||++.|+-.+
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            444578899999999999999999997654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK06893 DNA replication initiation factor; Validated

Probab=97.56  E-value=0.00013  Score=54.57  Aligned_cols=33  Identities=18%  Similarity=0.398  Sum_probs=26.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAG   53 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~   53 (215)
                      .+.++|.|+||+|||+++++++..+     +..+++..
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            4568999999999999999999876     45566553

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.56  E-value=0.00043  Score=55.13  Aligned_cols=37  Identities=24%  Similarity=0.431  Sum_probs=29.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLR   57 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~~~   57 (215)
                      ++.+|.+.||.|+||||..-+||-++.       ..+|.. |-||
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITt-DtYR  245 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITT-DTYR  245 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEe-ccch
Confidence            478999999999999999999998885       456666 3344

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.55  E-value=8.4e-05  Score=61.22  Aligned_cols=27  Identities=19%  Similarity=0.295  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      +..+++.||||+||||+|+.+++.++.
T Consensus        36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         36 SHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            456899999999999999999999875

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.55  E-value=6.8e-05  Score=55.39  Aligned_cols=30  Identities=23%  Similarity=0.424  Sum_probs=25.2

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-...-++.|.|++||||||+++.|+-.+
T Consensus        23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999997654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=97.55  E-value=0.0022  Score=47.40  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .-+-++|.||||.||||-+..||..+
T Consensus        47 nmP~liisGpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991|consen   47 NMPNLIISGPPGTGKTTSILCLAREL   72 (333)
T ss_pred             CCCceEeeCCCCCchhhHHHHHHHHH
Confidence            44558999999999999999999887

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.55  E-value=6.9e-05  Score=55.62  Aligned_cols=30  Identities=27%  Similarity=0.361  Sum_probs=25.3

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-...-++.|.|++|||||||++.|+-.+
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567799999999999999999998654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.54  E-value=9.2e-05  Score=59.22  Aligned_cols=27  Identities=19%  Similarity=0.249  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      +..+++.||+|+||||+|+.+++.+++
T Consensus        38 ~h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961         38 HHAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            567899999999999999999999974

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=97.54  E-value=7.8e-05  Score=51.44  Aligned_cols=29  Identities=21%  Similarity=0.374  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      ..-|+|.|++|+||||+|..|.++ ++.++
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~-g~~lv   42 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR-GHRLV   42 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCeEE
Confidence            467999999999999999999775 55544

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.54  E-value=7.4e-05  Score=55.15  Aligned_cols=31  Identities=42%  Similarity=0.429  Sum_probs=25.8

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+..+++|.|++||||||+.+.|+-.+
T Consensus        20 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          20 DLTVKKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444577899999999999999999998654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.54  E-value=7e-05  Score=55.61  Aligned_cols=31  Identities=26%  Similarity=0.342  Sum_probs=26.0

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.++.++.|.|++|||||||.+.|+-.+
T Consensus        25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444577899999999999999999998654

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.54  E-value=0.00022  Score=62.24  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=27.0

Q ss_pred             CCCe-EEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           19 KKPT-VVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        19 ~~~~-~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      .+|. .+++.||+|+|||++|+.|++.++..++.
T Consensus       481 ~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~  514 (731)
T TIGR02639       481 NKPVGSFLFTGPTGVGKTELAKQLAEALGVHLER  514 (731)
T ss_pred             CCCceeEEEECCCCccHHHHHHHHHHHhcCCeEE
Confidence            3454 57999999999999999999999764443

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.54  E-value=6.8e-05  Score=56.24  Aligned_cols=30  Identities=30%  Similarity=0.493  Sum_probs=25.6

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-...-+++|.|++|||||||++.|+-.+
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444577899999999999999999998655

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.54  E-value=7.2e-05  Score=56.40  Aligned_cols=31  Identities=23%  Similarity=0.348  Sum_probs=25.7

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-...-+++|.|++|||||||++.|+-.+
T Consensus        22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        22 NLNINPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3444567899999999999999999998654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.54  E-value=6.8e-05  Score=56.28  Aligned_cols=30  Identities=23%  Similarity=0.305  Sum_probs=25.3

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++|||||||++.|+-.+
T Consensus        21 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          21 FSVRPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             EEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            444567899999999999999999997654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.54  E-value=7e-05  Score=56.12  Aligned_cols=31  Identities=19%  Similarity=0.267  Sum_probs=25.9

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-+++|.|++|||||||++.|+-.+
T Consensus        29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3444567899999999999999999998654

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=9.4e-05  Score=56.75  Aligned_cols=33  Identities=18%  Similarity=0.321  Sum_probs=28.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~   53 (215)
                      ..-|++.||+|||||-||+.||+.++.++.-+|
T Consensus        97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiAD  129 (408)
T COG1219          97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIAD  129 (408)
T ss_pred             eccEEEECCCCCcHHHHHHHHHHHhCCCeeecc
Confidence            346999999999999999999999987665543

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.53  E-value=7.6e-05  Score=53.53  Aligned_cols=30  Identities=30%  Similarity=0.372  Sum_probs=25.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-++.|.|++|||||||++.|+..+
T Consensus        21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999997544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.53  E-value=7.5e-05  Score=55.17  Aligned_cols=30  Identities=23%  Similarity=0.211  Sum_probs=25.2

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+..+++|.|++||||||+.+.|+...
T Consensus         8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177          8 FVMGYHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            344567899999999999999999998654

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.53  E-value=6.6e-05  Score=55.34  Aligned_cols=25  Identities=24%  Similarity=0.198  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +. +++|.|++||||||+++.|+-.+
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            45 89999999999999999997644

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.53  E-value=7.5e-05  Score=56.22  Aligned_cols=31  Identities=19%  Similarity=0.329  Sum_probs=25.9

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-+++|.|++|||||||++.|+-.+
T Consensus        21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          21 SLSINPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3444577899999999999999999998654

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=97.53  E-value=8.4e-05  Score=58.37  Aligned_cols=35  Identities=23%  Similarity=0.608  Sum_probs=27.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC----CeEeeHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDL   55 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~----~~~i~~~~~   55 (215)
                      ...|+|.||||+|||.+|..+|+.+|    |..++..++
T Consensus        50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi   88 (398)
T PF06068_consen   50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI   88 (398)
T ss_dssp             T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred             CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence            67899999999999999999999997    445554444

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.53  E-value=7.5e-05  Score=55.13  Aligned_cols=30  Identities=27%  Similarity=0.326  Sum_probs=25.3

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+..++.|.|++|||||||++.|+-.+
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          21 LDIADGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            334567889999999999999999998765

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR03689 pup_AAA proteasome ATPase

Probab=97.53  E-value=7.8e-05  Score=61.67  Aligned_cols=28  Identities=25%  Similarity=0.481  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      .|.-|+|.||||+|||++++++++.++.
T Consensus       215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~  242 (512)
T TIGR03689       215 PPKGVLLYGPPGCGKTLIAKAVANSLAQ  242 (512)
T ss_pred             CCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence            4567999999999999999999999854

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.52  E-value=7.1e-05  Score=55.27  Aligned_cols=30  Identities=27%  Similarity=0.386  Sum_probs=25.2

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-++.|.|++|||||||++.|+-.+
T Consensus        20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            344567899999999999999999997654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=97.52  E-value=8.5e-05  Score=56.09  Aligned_cols=27  Identities=33%  Similarity=0.512  Sum_probs=24.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      .-=+++.||||-||||+|..+|+.+|.
T Consensus        52 lDHvLl~GPPGlGKTTLA~IIA~Emgv   78 (332)
T COG2255          52 LDHVLLFGPPGLGKTTLAHIIANELGV   78 (332)
T ss_pred             cCeEEeeCCCCCcHHHHHHHHHHHhcC
Confidence            345899999999999999999999974

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.52  E-value=7.8e-05  Score=56.10  Aligned_cols=30  Identities=30%  Similarity=0.308  Sum_probs=25.5

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.++-++.|.|++|||||||++.|+-.+
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          23 LDIPSGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999998754

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.52  E-value=0.0011  Score=50.61  Aligned_cols=119  Identities=19%  Similarity=0.195  Sum_probs=67.2

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHH
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQK   91 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (215)
                      +...+.-+|.++||.||||||...++-+++|    .+++...|-++....+.    ..+..  ++.--.....+...++.
T Consensus       120 ~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~sk----kslI~--QREvG~dT~sF~~aLra  193 (353)
T COG2805         120 LAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESK----KSLIN--QREVGRDTLSFANALRA  193 (353)
T ss_pred             HHhCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcch----Hhhhh--HHHhcccHHHHHHHHHH
Confidence            3344556899999999999999999989987    45555544333321111    00000  00011112344677888


Q ss_pred             HHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEE---ecCHHHHHHHHhhc
Q 028025           92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFF---DCSEEEMERRILNR  144 (215)
Q Consensus        92 ~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L---~~~~e~~~~R~~~r  144 (215)
                      ++.+  .--+|+=|-.+..+....-..+ . ...+.|+=   +.+.....+|+..-
T Consensus       194 ALRe--DPDVIlvGEmRD~ETi~~ALtA-A-ETGHLV~~TLHT~sA~~ti~Riidv  245 (353)
T COG2805         194 ALRE--DPDVILVGEMRDLETIRLALTA-A-ETGHLVFGTLHTNSAAKTIDRIIDV  245 (353)
T ss_pred             Hhhc--CCCEEEEeccccHHHHHHHHHH-H-hcCCEEEEecccccHHHHHHHHHHh
Confidence            8776  4556666777777776654442 1 11223332   33566677888753

>cd04155 Arl3 Arl3 subfamily

Probab=97.52  E-value=9.4e-05  Score=52.53  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+...|+|.|++||||||+.+.|...
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcC
Confidence            44678999999999999999999764

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.51  E-value=8.1e-05  Score=55.75  Aligned_cols=31  Identities=26%  Similarity=0.319  Sum_probs=26.3

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-...-++.|.|++|||||||++.|+..+
T Consensus        25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          25 SLSVPKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444577899999999999999999998765

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=97.51  E-value=0.0028  Score=55.77  Aligned_cols=27  Identities=15%  Similarity=0.262  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      +..++|.|++|+||||+++.|++.+++
T Consensus        37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C   63 (824)
T PRK07764         37 NHAYLFSGPRGCGKTSSARILARSLNC   63 (824)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCc
Confidence            456899999999999999999999986

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.51  E-value=7.3e-05  Score=55.51  Aligned_cols=30  Identities=27%  Similarity=0.313  Sum_probs=25.2

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++|||||||++.|+-.+
T Consensus        25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            344567899999999999999999997654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.51  E-value=0.00013  Score=53.73  Aligned_cols=34  Identities=26%  Similarity=0.493  Sum_probs=27.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAG   53 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~   53 (215)
                      +..++.|.|+||||||+++..++...   +  ..+++.+
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e   49 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE   49 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            56789999999999999999988655   2  4556553

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.51  E-value=9.5e-05  Score=52.88  Aligned_cols=30  Identities=27%  Similarity=0.382  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-....++.|.|++|||||||.+.|+-.+
T Consensus        20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             cEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            344567899999999999999999997654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.51  E-value=8.4e-05  Score=53.03  Aligned_cols=30  Identities=33%  Similarity=0.392  Sum_probs=25.0

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-...-+++|.|++|||||||.+.|+-.+
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            334567799999999999999999997654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.51  E-value=7.9e-05  Score=54.68  Aligned_cols=30  Identities=30%  Similarity=0.313  Sum_probs=25.3

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-++.|.|++|||||||.+.|+-.+
T Consensus        19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        19 LTIEKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            444567899999999999999999998654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.51  E-value=0.00041  Score=51.64  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ...++.|.|+||||||+++..++..
T Consensus        18 ~g~v~~I~G~~GsGKT~l~~~ia~~   42 (226)
T cd01393          18 TGRITEIFGEFGSGKTQLCLQLAVE   42 (226)
T ss_pred             CCcEEEEeCCCCCChhHHHHHHHHH
Confidence            5779999999999999999998765

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.51  E-value=8.4e-05  Score=55.40  Aligned_cols=30  Identities=17%  Similarity=0.304  Sum_probs=25.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++|||||||++.|+-..
T Consensus        28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         28 FSLRAGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            444567799999999999999999997644

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=97.50  E-value=0.00035  Score=52.15  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +..+++|.|+||+||||++..++..
T Consensus        19 ~G~~~~i~G~~G~GKT~l~~~~~~~   43 (229)
T TIGR03881        19 RGFFVAVTGEPGTGKTIFCLHFAYK   43 (229)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHH
Confidence            5789999999999999999987643

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>CHL00176 ftsH cell division protein; Validated

Probab=97.50  E-value=0.00011  Score=62.54  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=28.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ..|.-+++.||||+|||++|+.+|...+..++.
T Consensus       214 ~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~  246 (638)
T CHL00176        214 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFS  246 (638)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence            346679999999999999999999999866554

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.50  E-value=8.4e-05  Score=55.44  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=25.8

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-++.|.|++|||||||++.|+-.+
T Consensus        21 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          21 LDIPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            444567899999999999999999998765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.50  E-value=9.3e-05  Score=52.44  Aligned_cols=30  Identities=17%  Similarity=0.372  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-++.|.|++||||||+++.|+-.+
T Consensus        22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          22 FEIKPGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            444567899999999999999999997655

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.50  E-value=0.0046  Score=52.75  Aligned_cols=28  Identities=18%  Similarity=0.119  Sum_probs=25.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      +.-+++.||+|+||||+|+.|++.+++.
T Consensus        38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~c~   65 (620)
T PRK14954         38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (620)
T ss_pred             CeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            5569999999999999999999999874

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.50  E-value=9.1e-05  Score=54.98  Aligned_cols=30  Identities=23%  Similarity=0.367  Sum_probs=25.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-...-+++|.|++|||||||.+.|+-.+
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            334467899999999999999999998654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.50  E-value=0.0034  Score=53.16  Aligned_cols=29  Identities=14%  Similarity=0.227  Sum_probs=25.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      -+..+++.||+|+||||+|+.|++.+++.
T Consensus        34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   62 (584)
T PRK14952         34 INHAYLFSGPRGCGKTSSARILARSLNCA   62 (584)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            35678999999999999999999999863

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.50  E-value=9.5e-05  Score=51.76  Aligned_cols=31  Identities=26%  Similarity=0.457  Sum_probs=26.7

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-...-++++.|++||||||+.+.|..++
T Consensus        31 slsV~aGECvvL~G~SG~GKStllr~LYaNY   61 (235)
T COG4778          31 SLSVNAGECVVLHGPSGSGKSTLLRSLYANY   61 (235)
T ss_pred             eEEecCccEEEeeCCCCCcHHHHHHHHHhcc
Confidence            4455678899999999999999999998777

>cd01394 radB RadB

Probab=97.50  E-value=0.00013  Score=54.02  Aligned_cols=26  Identities=31%  Similarity=0.455  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..++.|.|+|||||||+|..++...
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~~a~~~   43 (218)
T cd01394          18 RGTVTQVYGPPGTGKTNIAIQLAVET   43 (218)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57889999999999999999998776

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.49  E-value=8.8e-05  Score=55.71  Aligned_cols=30  Identities=30%  Similarity=0.445  Sum_probs=25.5

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.++-+++|.|++|||||||++.|+-.+
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        22 FTVRPGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            444578899999999999999999998654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.49  E-value=8.8e-05  Score=54.00  Aligned_cols=30  Identities=20%  Similarity=0.386  Sum_probs=25.2

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.++-+++|.|++|||||||++.|+-..
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         21 ITFLPSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            334567799999999999999999997754

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.49  E-value=0.00011  Score=58.06  Aligned_cols=28  Identities=25%  Similarity=0.393  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ++...++|.||||+||||+|+.+++.+.
T Consensus        34 ~~~~~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         34 PNLPHLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            3434588999999999999999999873

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.49  E-value=8.9e-05  Score=55.29  Aligned_cols=31  Identities=29%  Similarity=0.452  Sum_probs=26.1

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-+++|.|++|||||||.+.|+-.+
T Consensus        25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          25 SFSIKKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444578899999999999999999998655

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK04296 thymidine kinase; Provisional

Probab=97.49  E-value=0.00012  Score=53.10  Aligned_cols=25  Identities=24%  Similarity=0.420  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+++++|++|+||||++..++.++
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999998887

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.49  E-value=8.1e-05  Score=54.07  Aligned_cols=28  Identities=29%  Similarity=0.328  Sum_probs=24.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.-.+..++.|.|++||||||+++.|+-
T Consensus        28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          28 GYVKPGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3345678999999999999999999985

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=97.49  E-value=9.3e-05  Score=55.78  Aligned_cols=30  Identities=40%  Similarity=0.568  Sum_probs=25.5

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ++.-.+.-+++|.|++|||||||.+.|+-.
T Consensus        20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        20 NLTVKKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             ceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            344457789999999999999999999875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.49  E-value=0.00095  Score=49.41  Aligned_cols=117  Identities=23%  Similarity=0.383  Sum_probs=63.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC----CeE--------eeHHHHHHHHHHcCC--CcHHH---------HHH
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTH--------LSAGDLLRAEIKSGS--ENGTM---------IQN   72 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~----~~~--------i~~~~~~~~~~~~~~--~~~~~---------~~~   72 (215)
                      +.-.+..+..|.|++||||||+.+.+.-.+.    -..        ++.++.+.-....+.  +.+..         ..-
T Consensus        29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVaf  108 (263)
T COG1127          29 LDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF  108 (263)
T ss_pred             eeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhe
Confidence            3445778999999999999999999866552    112        222222222111111  11111         111


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCH----HHHHHHHHhcCCCCcEEEEEecC
Q 028025           73 MIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNE----ENRAAFEAVTKIEPEFVLFFDCS  133 (215)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iidg~~~~~----~~~~~~~~~~~~~~~~~i~L~~~  133 (215)
                      .+.+...++.....+++..++..-+-.+.+.|-||...    ..+-.+.++....|++++ ++-|
T Consensus       109 plre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~-~DEP  172 (263)
T COG1127         109 PLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLF-LDEP  172 (263)
T ss_pred             ehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEE-ecCC
Confidence            22233446666777777777765544455577777553    233444443456777544 4543

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=97.49  E-value=0.0034  Score=50.72  Aligned_cols=29  Identities=21%  Similarity=0.352  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      .+.-+++.||+|+||||+|+.+++.+.+.
T Consensus        35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~   63 (394)
T PRK07940         35 MTHAWLFTGPPGSGRSVAARAFAAALQCT   63 (394)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            46789999999999999999999998653

>PHA02624 large T antigen; Provisional

Probab=97.48  E-value=0.00016  Score=60.37  Aligned_cols=33  Identities=27%  Similarity=0.289  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      +..+++|.||||+||||++..|.+.++..+++.
T Consensus       430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV  462 (647)
T PHA02624        430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV  462 (647)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence            455999999999999999999999996555653

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.48  E-value=0.00011  Score=48.65  Aligned_cols=21  Identities=29%  Similarity=0.461  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~   43 (215)
                      .|+|.|.+|||||||...|..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHhc
Confidence            389999999999999999975

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.48  E-value=0.0001  Score=55.20  Aligned_cols=30  Identities=37%  Similarity=0.439  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++|||||||.+.|+-.+
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             eEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999998654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.48  E-value=9.4e-05  Score=53.03  Aligned_cols=31  Identities=26%  Similarity=0.415  Sum_probs=25.9

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+..++.|.|++|||||||++.|+-..
T Consensus        22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3444567889999999999999999997754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.48  E-value=9.9e-05  Score=55.62  Aligned_cols=30  Identities=17%  Similarity=0.220  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-++.|.|++|||||||++.|+-..
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         23 LDCPQGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999998654

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.48  E-value=9.4e-05  Score=55.21  Aligned_cols=30  Identities=30%  Similarity=0.387  Sum_probs=25.6

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.++-++.|.|++|||||||++.|+-.+
T Consensus        31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         31 LVVKRGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            444577899999999999999999998654

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.48  E-value=9.6e-05  Score=55.23  Aligned_cols=31  Identities=32%  Similarity=0.428  Sum_probs=26.2

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-++.|.|++|||||||++.|+-.+
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444578899999999999999999998655

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.47  E-value=0.00011  Score=53.67  Aligned_cols=29  Identities=24%  Similarity=0.285  Sum_probs=23.2

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      .+.-....+++|+||+||||||+.+.++-
T Consensus        19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          19 DIDMEKKNGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             eEEEcCCcEEEEECCCCCChHHHHHHHHH
Confidence            33333457899999999999999999974

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.47  E-value=0.00014  Score=57.81  Aligned_cols=27  Identities=26%  Similarity=0.425  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .++.+++|.||+|+||||++.+|+..+
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999764

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.47  E-value=9.7e-05  Score=55.66  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=25.3

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.++-+++|.|++|||||||++.|+-.+
T Consensus        24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            334467799999999999999999998765

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.47  E-value=9.7e-05  Score=56.17  Aligned_cols=30  Identities=30%  Similarity=0.412  Sum_probs=25.5

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++|||||||++.|+-.+
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         22 LTLESGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999998654

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.47  E-value=9.9e-05  Score=55.21  Aligned_cols=29  Identities=24%  Similarity=0.329  Sum_probs=24.7

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .-.++-++.|.|++||||||+++.|+-.+
T Consensus         7 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184         7 TIQQGEFISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34567799999999999999999998655

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PLN03025 replication factor C subunit; Provisional

Probab=97.47  E-value=0.00012  Score=57.54  Aligned_cols=26  Identities=23%  Similarity=0.437  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..-+++.||||+||||+|+.+++.+
T Consensus        33 ~~~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         33 NMPNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            33347899999999999999999987

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.47  E-value=0.00011  Score=52.52  Aligned_cols=30  Identities=23%  Similarity=0.393  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-....++.|.|++|||||||.+.|+-.+
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          23 FSIEPGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            444567799999999999999999998654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.46  E-value=0.0047  Score=52.68  Aligned_cols=27  Identities=15%  Similarity=0.250  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      +..++|.|++|+||||+++.|++.+++
T Consensus        38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c   64 (585)
T PRK14950         38 AHAYLFTGPRGVGKTSTARILAKAVNC   64 (585)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            567899999999999999999999975

>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]

Probab=97.46  E-value=0.0052  Score=50.32  Aligned_cols=161  Identities=14%  Similarity=0.257  Sum_probs=91.7

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC-----------------------CeEeeHHHHHHHHHHcCCCcHHHHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-----------------------YTHLSAGDLLRAEIKSGSENGTMIQNM   73 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~-----------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~   73 (215)
                      ++-+...+++.|+.|+|-..+-+.|-....                       |.+++...               +...
T Consensus       336 ~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~---------------~e~d  400 (542)
T KOG0609|consen  336 PPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEE---------------MEAD  400 (542)
T ss_pred             cccccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHH---------------Hhhh
Confidence            335678899999999999999888866543                       33333333               3333


Q ss_pred             HHcCCCCCHH--------HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc
Q 028025           74 IKEGKIVPSE--------VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN  145 (215)
Q Consensus        74 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~  145 (215)
                      +.++.++..-        ...+.++..+..  |+.+++|-.|......+.    .-..| ++||+.+|.-...++..+-.
T Consensus       401 I~~~~~lE~GEy~~nlYGTs~dsVr~v~~~--gKicvLdv~Pqalk~lRt----~Ef~P-yVIFI~pP~~~~~r~~r~~~  473 (542)
T KOG0609|consen  401 IRAGKFLEYGEYEGNLYGTSLDSVRNVIAS--GKICVLDVEPQALKVLRT----AEFKP-YVIFIAPPSLEELRALRKVA  473 (542)
T ss_pred             hhcCCceecCcchhccccchHHHHHHHHHh--CCEEEEecCHHHhhhhhh----hcccc-eEEEecCCCchhHHHHhhhc
Confidence            3333332211        125556666654  899999976644444333    44556 58888888766666554431


Q ss_pred             -------CCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccccc
Q 028025          146 -------QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKVK  208 (215)
Q Consensus       146 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~~~  208 (215)
                             ....++..+.+.+       ....+...|...-..+++|+  ++++.++++...+.....+.+
T Consensus       474 ~~~~~~~~~~~d~~Lq~i~~-------eS~~ie~~yghyfD~iIvN~--dld~t~~eL~~~iekl~tepq  534 (542)
T KOG0609|consen  474 VMSTIVAKQFTDEDLQEIID-------ESARIEQQYGHYFDLIIVNS--DLDKTFRELKTAIEKLRTEPQ  534 (542)
T ss_pred             cccccccccCCHHHHHHHHH-------HHHHHHHHhhhheeEEEEcC--cHHHHHHHHHHHHHHhccCCc
Confidence                   1122222222222       22223333444444677765  678888888888876655443

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.46  E-value=0.0024  Score=52.69  Aligned_cols=38  Identities=18%  Similarity=0.257  Sum_probs=30.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh-----C--CeEeeHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLLRAE   59 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~-----~--~~~i~~~~~~~~~   59 (215)
                      ..++|.|++|+|||+|+++++..+     +  ..+++..++....
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~  193 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF  193 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence            458999999999999999999887     2  4577777765544

>PRK08181 transposase; Validated

Probab=97.46  E-value=0.0042  Score=47.49  Aligned_cols=40  Identities=28%  Similarity=0.402  Sum_probs=30.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE   59 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~~~~   59 (215)
                      ....++|.||||+|||.|+.+++...   |  ..+++..+++...
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l  149 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL  149 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence            34569999999999999999998655   3  4556666666554

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.46  E-value=9.6e-05  Score=56.08  Aligned_cols=27  Identities=22%  Similarity=0.317  Sum_probs=23.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      -.++-+++|.|++|||||||++.|+-.
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         29 FEQNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            346778999999999999999999854

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=97.46  E-value=0.0001  Score=55.13  Aligned_cols=29  Identities=31%  Similarity=0.610  Sum_probs=24.7

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .-.+.-+++|.|++|||||||++.|+-.+
T Consensus         8 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770         8 SLKRGEVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33467799999999999999999998654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.46  E-value=0.00011  Score=55.71  Aligned_cols=30  Identities=37%  Similarity=0.329  Sum_probs=25.3

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.++-++.|.|++|||||||++.|+-.+
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         24 LEVKPGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344567889999999999999999998654

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=97.46  E-value=0.00011  Score=53.59  Aligned_cols=31  Identities=23%  Similarity=0.236  Sum_probs=26.1

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-+++|.|++||||||+.+.|+..+
T Consensus        20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        20 SFTLNAGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4444578899999999999999999997754

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.45  E-value=0.00011  Score=54.14  Aligned_cols=30  Identities=33%  Similarity=0.373  Sum_probs=25.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++|||||||.+.|+-..
T Consensus        21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            344567899999999999999999997644

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.45  E-value=0.00011  Score=55.66  Aligned_cols=30  Identities=23%  Similarity=0.346  Sum_probs=25.3

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.++-+++|.|++|||||||++.|+-.+
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         24 LEIPDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            334567899999999999999999998654

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.45  E-value=0.00011  Score=51.96  Aligned_cols=30  Identities=27%  Similarity=0.435  Sum_probs=25.3

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-++.|.|++|||||||.+.|+-..
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          21 LSVRRGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444577899999999999999999997654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.45  E-value=0.00014  Score=54.19  Aligned_cols=28  Identities=29%  Similarity=0.466  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ..|..++|.|++||||||++..|-..+.
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~~~   38 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYYLR   38 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence            4678999999999999999988776664

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK10908 cell division protein FtsE; Provisional

Probab=97.44  E-value=0.00012  Score=54.51  Aligned_cols=30  Identities=23%  Similarity=0.308  Sum_probs=25.6

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-....+++|.|++|||||||.+.|+-.+
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444578899999999999999999997654

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.44  E-value=0.00011  Score=50.82  Aligned_cols=30  Identities=23%  Similarity=0.332  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-++.|.|++||||||+.+.|+..+
T Consensus        21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          21 LTINPGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            444567899999999999999999997755

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=97.44  E-value=0.00015  Score=50.70  Aligned_cols=27  Identities=22%  Similarity=0.284  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +++++.|+|..+||||||+..|...+.
T Consensus         1 m~~Il~ivG~k~SGKTTLie~lv~~L~   27 (161)
T COG1763           1 MMKILGIVGYKNSGKTTLIEKLVRKLK   27 (161)
T ss_pred             CCcEEEEEecCCCChhhHHHHHHHHHH
Confidence            357899999999999999999988883

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.44  E-value=0.00018  Score=56.49  Aligned_cols=29  Identities=24%  Similarity=0.458  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      .|..+++.|+||+||||+++.+++.++..
T Consensus        42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~   70 (316)
T PHA02544         42 IPNMLLHSPSPGTGKTTVAKALCNEVGAE   70 (316)
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCcc
Confidence            35678889999999999999999988643

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.43  E-value=0.00011  Score=52.83  Aligned_cols=29  Identities=17%  Similarity=0.203  Sum_probs=24.7

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .-.+.-++.|.|++|||||||.+.|+..+
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          22 EVRAGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            33467789999999999999999998765

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=97.43  E-value=0.00011  Score=55.70  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=26.1

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-+++|.|++|||||||++.|+-.+
T Consensus        23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        23 SFDLYPGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444567899999999999999999998765

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK09183 transposase/IS protein; Provisional

Probab=97.43  E-value=0.00032  Score=53.42  Aligned_cols=37  Identities=27%  Similarity=0.376  Sum_probs=26.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLL   56 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~   56 (215)
                      ....++|.||||+|||+++..++...   |  ..+++..++.
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~  142 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL  142 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence            45578899999999999999997654   3  2345544444

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.43  E-value=0.00012  Score=55.19  Aligned_cols=31  Identities=32%  Similarity=0.398  Sum_probs=26.2

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.++-++.|.|++|||||||++.|+-.+
T Consensus        23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444578899999999999999999998765

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.43  E-value=0.00041  Score=49.74  Aligned_cols=40  Identities=25%  Similarity=0.393  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAE   59 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~~~~~~~   59 (215)
                      ++.-++|.|++|+|||.+|..++..+     ...+++..+++...
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l   90 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL   90 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence            35679999999999999999998766     35777888877765

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=97.43  E-value=0.00012  Score=54.63  Aligned_cols=31  Identities=32%  Similarity=0.458  Sum_probs=25.7

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-....++.|.|++|||||||++.|+..+
T Consensus        27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~   57 (226)
T cd03234          27 SLHVESGQVMAILGSSGSGKTTLLDAISGRV   57 (226)
T ss_pred             eEEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence            3344567899999999999999999998654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.43  E-value=0.00012  Score=53.86  Aligned_cols=30  Identities=27%  Similarity=0.282  Sum_probs=25.5

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-++.|.|++||||||+++.|+...
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         23 FTLAAGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444578899999999999999999997754

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=97.43  E-value=0.00014  Score=53.13  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+ +++|.|++||||||+.+.|+--+
T Consensus        21 ~~g-~~~i~G~nGsGKStll~al~~l~   46 (197)
T cd03278          21 PPG-LTAIVGPNGSGKSNIIDAIRWVL   46 (197)
T ss_pred             CCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence            345 89999999999999999996443

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.43  E-value=0.00011  Score=55.80  Aligned_cols=30  Identities=23%  Similarity=0.262  Sum_probs=25.3

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.++-+++|.|++|||||||++.|+..+
T Consensus        33 l~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            334467799999999999999999998765

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=97.43  E-value=9.3e-05  Score=57.61  Aligned_cols=37  Identities=22%  Similarity=0.564  Sum_probs=30.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC----CeEeeHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLR   57 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~----~~~i~~~~~~~   57 (215)
                      ..-|+|.||||+|||.||-.+|+.+|    |.-++.+++|.
T Consensus        65 GrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS  105 (450)
T COG1224          65 GRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYS  105 (450)
T ss_pred             ccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeee
Confidence            67899999999999999999999997    44455545444

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=97.43  E-value=0.00015  Score=53.93  Aligned_cols=27  Identities=30%  Similarity=0.363  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+..++.|.|++|||||||++.|+..+
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456789999999999999999998754

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=97.43  E-value=0.00012  Score=54.17  Aligned_cols=29  Identities=24%  Similarity=0.312  Sum_probs=24.5

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+ .+++|.|++|||||||++.|+-.+
T Consensus        19 l~i~~-e~~~i~G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          19 FDLNE-EVTGIFGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             EEEcc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence            44456 899999999999999999997654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=97.42  E-value=0.00012  Score=53.61  Aligned_cols=30  Identities=27%  Similarity=0.461  Sum_probs=25.7

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.++.+++|.|++||||||+++.++-.+
T Consensus        26 ~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          26 LEVPKGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            444578899999999999999999997755

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>KOG2878 consensus Predicted kinase [General function prediction only]

Probab=97.42  E-value=8.4e-05  Score=53.24  Aligned_cols=42  Identities=24%  Similarity=0.261  Sum_probs=31.6

Q ss_pred             cCCCC--CeEEEEEcCCCCChHHHHHHHHHHh--------CCeEeeHHHHHH
Q 028025           16 VTVKK--PTVVFVLGGPGSGKGTQCANIVEHF--------GYTHLSAGDLLR   57 (215)
Q Consensus        16 ~~~~~--~~~I~i~G~~gsGKsTla~~La~~~--------~~~~i~~~~~~~   57 (215)
                      +..+.  |.+|.+.||-||||||++-+|-.++        ....++.||++-
T Consensus        24 f~~G~~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYL   75 (282)
T KOG2878|consen   24 FKDGDDVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYL   75 (282)
T ss_pred             ccCCCcCcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceee
Confidence            34444  9999999999999999998764433        246778888753

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=97.42  E-value=0.00016  Score=54.41  Aligned_cols=43  Identities=23%  Similarity=0.422  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAE   59 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~   59 (215)
                      ...+|.+|++.|..||||||++++|-..+.     -.+++.|.-.+..
T Consensus        15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v   62 (366)
T KOG1532|consen   15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV   62 (366)
T ss_pred             cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence            345788999999999999999999988873     3456665554443

>cd04163 Era Era subfamily

Probab=97.42  E-value=0.00014  Score=50.88  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ...|++.|++||||||++..|...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999998654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.002  Score=54.78  Aligned_cols=47  Identities=26%  Similarity=0.341  Sum_probs=39.4

Q ss_pred             ccccccc--ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025            6 ETPVKEA--DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus         6 ~~p~~~~--~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      +-|.++.  +.+.+-+-+.-|.+.||||+|||-+|.+++...++.+++.
T Consensus       684 ~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisv  732 (952)
T KOG0735|consen  684 EWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISV  732 (952)
T ss_pred             hccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEe
Confidence            4566755  4666667778899999999999999999999999888884

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.42  E-value=0.00012  Score=54.64  Aligned_cols=30  Identities=23%  Similarity=0.439  Sum_probs=25.3

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-...-++.|.|++|||||||.+.|+..+
T Consensus        24 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          24 FSIKPGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            334467789999999999999999998765

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=97.42  E-value=0.00012  Score=55.03  Aligned_cols=31  Identities=29%  Similarity=0.400  Sum_probs=26.0

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.++-++.|.|++|||||||++.|+-.+
T Consensus        21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444577899999999999999999998655

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.42  E-value=0.00013  Score=51.96  Aligned_cols=30  Identities=30%  Similarity=0.459  Sum_probs=25.6

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-....++.|.|++||||||+.+.++-.+
T Consensus        23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            444567899999999999999999997765

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=97.42  E-value=0.00012  Score=54.78  Aligned_cols=31  Identities=26%  Similarity=0.410  Sum_probs=26.0

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.++-++.|.|++|||||||++.|+-.+
T Consensus        22 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3444567899999999999999999998665

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=97.42  E-value=0.00012  Score=54.28  Aligned_cols=30  Identities=27%  Similarity=0.417  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.++-++.|.|++||||||+++.|+-..
T Consensus        25 ~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            444578899999999999999999997654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.42  E-value=0.00013  Score=52.40  Aligned_cols=30  Identities=23%  Similarity=0.419  Sum_probs=25.2

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++||||||+.+.++...
T Consensus        20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            334567899999999999999999997654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.42  E-value=0.00013  Score=53.53  Aligned_cols=31  Identities=19%  Similarity=0.227  Sum_probs=25.9

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-++.|.|++|||||||.+.|+..+
T Consensus        21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (204)
T PRK13538         21 SFTLNAGELVQIEGPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             eEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444567899999999999999999998754

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.41  E-value=0.0029  Score=47.55  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      .|.-|++.||||.|||-+|++||...+.+++..
T Consensus       150 APknVLFyGppGTGKTm~Akalane~kvp~l~v  182 (368)
T COG1223         150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLV  182 (368)
T ss_pred             CcceeEEECCCCccHHHHHHHHhcccCCceEEe
Confidence            478899999999999999999999998666543

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.41  E-value=0.00013  Score=54.11  Aligned_cols=30  Identities=33%  Similarity=0.355  Sum_probs=25.0

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-...-++.|.|++|||||||.+.|+-.+
T Consensus        26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            333467889999999999999999997654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.41  E-value=0.00012  Score=54.87  Aligned_cols=28  Identities=29%  Similarity=0.483  Sum_probs=23.7

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.-.++.++.|.||.|||||||.+.+.-
T Consensus        25 l~v~~G~~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          25 LSVEKGEITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3445678999999999999999999855

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.00018  Score=55.75  Aligned_cols=32  Identities=19%  Similarity=0.417  Sum_probs=29.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      .|+-|+++||.|+|||.+|++||+--|.+++.
T Consensus        49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiK   80 (444)
T COG1220          49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIK   80 (444)
T ss_pred             CccceEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            58899999999999999999999988877766

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.41  E-value=0.00013  Score=53.28  Aligned_cols=30  Identities=20%  Similarity=0.257  Sum_probs=25.2

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++||||||+++.++-..
T Consensus        22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         22 FHLPAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344577899999999999999999997654

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=97.41  E-value=0.00015  Score=57.65  Aligned_cols=26  Identities=38%  Similarity=0.677  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-+|+|+||+||||||+++.|.+.+
T Consensus       133 ~~glilI~GpTGSGKTTtL~aLl~~i  158 (358)
T TIGR02524       133 QEGIVFITGATGSGKSTLLAAIIREL  158 (358)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998877

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK13764 ATPase; Provisional

Probab=97.41  E-value=0.00015  Score=61.12  Aligned_cols=27  Identities=26%  Similarity=0.631  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ....|+|+|++||||||++++|++.++
T Consensus       256 ~~~~ILIsG~TGSGKTTll~AL~~~i~  282 (602)
T PRK13764        256 RAEGILIAGAPGAGKSTFAQALAEFYA  282 (602)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            356699999999999999999998885

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=97.41  E-value=0.00013  Score=55.67  Aligned_cols=30  Identities=23%  Similarity=0.394  Sum_probs=25.0

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-...-+++|.|++|||||||++.|+-.+
T Consensus        34 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         34 LDIAKNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            333467889999999999999999998653

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.41  E-value=0.00016  Score=50.52  Aligned_cols=25  Identities=20%  Similarity=0.343  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...+++.|++|+|||||...|....
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4889999999999999999996654

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.41  E-value=0.00011  Score=53.75  Aligned_cols=30  Identities=37%  Similarity=0.473  Sum_probs=25.2

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++|||||||++.|+-.+
T Consensus        28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (202)
T cd03233          28 GVVKPGEMVLVLGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             EEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence            334567799999999999999999997754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=97.41  E-value=0.00013  Score=55.33  Aligned_cols=31  Identities=26%  Similarity=0.277  Sum_probs=25.9

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.++-+++|.|++|||||||.+.|+-.+
T Consensus        20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        20 NFSVAAGEKVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444577899999999999999999998654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=97.41  E-value=0.00013  Score=54.97  Aligned_cols=31  Identities=26%  Similarity=0.390  Sum_probs=25.8

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.++-+++|.|++|||||||++.|+-.+
T Consensus        21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3444567889999999999999999998654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.41  E-value=0.00019  Score=62.62  Aligned_cols=33  Identities=27%  Similarity=0.487  Sum_probs=28.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ..+.-|+|.||||+||||+++.++..++..++.
T Consensus       210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~  242 (733)
T TIGR01243       210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIS  242 (733)
T ss_pred             CCCceEEEECCCCCChHHHHHHHHHHhCCeEEE
Confidence            456679999999999999999999999865543

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.41  E-value=0.00013  Score=55.65  Aligned_cols=30  Identities=20%  Similarity=0.354  Sum_probs=25.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++|||||||++.|+-.+
T Consensus        33 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         33 LSIPENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            334567789999999999999999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	215
1tev_A	196	Crystal Structure Of The Human UmpCMP KINASE IN OPE		5e-47
1qf9_A	194	Ph Influences Fluoride Coordination Number Of The A		4e-45
1uky_A	203	Substrate Specificity And Assembly Of Catalytic Cen		3e-44
3adk_A	195	Refined Structure Of Porcine Cytosolic Adenylate Ki		4e-39
1z83_A	196	Crystal Structure Of Human Ak1a In Complex With Ap5		8e-38
3umf_A	217	Schistosoma Mansoni Adenylate Kinase Length = 217		7e-37
2bwj_A	199	Structure Of Adenylate Kinase 5 Length = 199		5e-34
2rgx_A	206	Crystal Structure Of Adenylate Kinase From Aquifex		3e-25
3cm0_A	186	Crystal Structure Of Adenylate Kinase From Thermus		5e-24
1ake_A	214	Structure Of The Complex Between Adenylate Kinase F		5e-24
3hpr_A	214	Crystal Structure Of V148g Adenylate Kinase From E.		6e-24
1e4v_A	214	Mutant G10v Of Adenylate Kinase From E. Coli, Modif		6e-23
1e4y_A	214	Mutant P9l Of Adenylate Kinase From E. Coli, Modifi		1e-21
3fb4_A	216	Crystal Structure Of Adenylate Kinase From Mariniba		1e-21
3be4_A	217	Crystal Structure Of Cryptosporidium Parvum Adenyla		3e-21
3tlx_A	243	Crystal Structure Of Pf10_0086, Adenylate Kinase Fr		3e-21
1s3g_A	217	Crystal Structure Of Adenylate Kinase From Bacillus		4e-21
2ak3_A	226	The Three-Dimensional Structure Of The Complex Betw		6e-21
1zd8_A	227	Structure Of Human Adenylate Kinase 3 Like 1 Length		6e-21
1zin_A	217	Adenylate Kinase With Bound Ap5a Length = 217		2e-20
2c9y_A	242	Structure Of Human Adenylate Kinase 2 Length = 242		2e-20
2ar7_A	246	Crystal Structure Of Human Adenylate Kinase 4, Ak4		2e-20
1p4s_A	181	Solution Structure Of Mycobacterium Tuberculosis Ad		3e-20
2cdn_A	201	Crystal Structure Of Mycobacterium Tuberculosis Ade		3e-20
1ak2_A	233	Adenylate Kinase Isoenzyme-2 Length = 233		4e-20
1zak_A	222	Adenylate Kinase From Maize In Complex With The Inh		7e-20
3ndp_A	231	Crystal Structure Of Human Ak4(L171p) Length = 231		8e-20
3dkv_A	217	Crystal Structure Of Adenylate Kinase Variant Aklse		2e-19
2qaj_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		9e-18
2eu8_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		9e-18
2p3s_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		9e-18
1p3j_A	217	Adenylate Kinase From Bacillus Subtilis Length = 21		1e-17
2ori_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-17
3dl0_A	216	Crystal Structure Of Adenylate Kinase Variant Aklse		2e-17
1aky_A	220	High-Resolution Structures Of Adenylate Kinase From		3e-17
2oo7_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		3e-17
3aky_A	220	Stability, Activity And Structure Of Adenylate Kina		3e-17
3gmt_A	230	Crystal Structure Of Adenylate Kinase From Burkhold		6e-17
2osb_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		7e-17
1dvr_A	220	Structure Of A Mutant Adenylate Kinase Ligated With		2e-15
3l0p_A	223	Crystal Structures Of Iron Containing Adenylate Kin		1e-13
2xb4_A	223	Crystal Structures Of Zinc Containing Adenylate Kin		1e-13

>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN Conformation Length = 196

Iteration: 1
 Score =  183 bits (465), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 96/184 (52%), Positives = 127/184 (69%), Gaps = 10/184 (5%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
           LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+T
Sbjct: 9   LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEIT 68
Query: 86  IKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
           I LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFDC+ E   
Sbjct: 69  ISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128
Query: 139 RRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
            R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V EVFD V
Sbjct: 129 ERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEV 188
Query: 197 KAVF 200
             +F
Sbjct: 189 VQIF 192

>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx Phosphoryl Transfer Transition State Analog In UmpCMP Kinase Length = 194

Iteration: 1
 Score =  177 bits (449), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 96/178 (53%), Positives = 127/178 (71%), Gaps = 4/178 (2%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+IVPS VT+
Sbjct: 12  LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTV 71
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
           KLL+ A++ +    FL+DGFPRNEEN  ++E   K  ++ +FVLFFDC EE M +R+L R
Sbjct: 72  KLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKR 131
Query: 145 NQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
            +  GR DDN+E+I+KRF  F   +  V+ +Y    KV+ I A + V EV++ V+ +F
Sbjct: 132 GESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLF 189

>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase Length = 203

Iteration: 1
 Score =  174 bits (442), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 125/177 (70%), Gaps = 7/177 (3%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVT 85
           LGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+ G +I+N IKEG+IVP E+T
Sbjct: 21  LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEIT 80
Query: 86  IKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
           + LL+ A+ +   +   KFLIDGFPR  +   +FE    +E +F+LFFDC E+ M  R+L
Sbjct: 81  LALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIMLERLL 139
Query: 143 NRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 197
            R +  GR DDN+E+I+KRF  F E+S+PV++Y+E K KV ++   + V +V+  V+
Sbjct: 140 ERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQ 196

>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At 2.1 Angstroms Resolution Length = 195

Iteration: 1
 Score =  157 bits (397), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/175 (45%), Positives = 116/175 (66%), Gaps = 7/175 (4%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+  ++++G++VP E  +
Sbjct: 15  VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVL 74
Query: 87  KLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILN 143
            +L+ AM  +   +  FLIDG+PR  +    FE   KI +P  +L+ D   E M +R+L 
Sbjct: 75  DMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFER--KIGQPTLLLYVDAGPETMTKRLLK 132
Query: 144 RNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
           R +  GR DDN ETI+KR + + +++ PV+ +YE +G VRK++A   V +VF  V
Sbjct: 133 RGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQV 187

>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a Length = 196

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 77/174 (44%), Positives = 111/174 (63%), Gaps = 5/174 (2%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +GGPGSGKGTQC  IV+ +GYTHLS GDLLR+E+ SGS  G  +  ++++G++VP E  +
Sbjct: 15  VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVL 74
Query: 87  KLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
            +L+ AM    N    FLIDG+PR  +    FE     +P  +L+ D   E M +R+L R
Sbjct: 75  DMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG-QPTLLLYVDAGPETMTQRLLKR 133
Query: 145 NQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
            +  GR DDN ETI+KR + + +++ PV+ +YE +G VRK++A   V  VF  V
Sbjct: 134 GETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQV 187

>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase Length = 217

Iteration: 1
 Score =  150 bits (378), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 83/175 (47%), Positives = 115/175 (65%), Gaps = 7/175 (4%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LGGPGSGKGTQC  +V+ F + HLS+GDLLRAE++SGS  G  ++ M++ G++VP EV +
Sbjct: 35  LGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVL 94
Query: 87  KLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEF-VLFFDCSEEEMERRILN 143
            LL++AM +    N  FLIDG+PR  +    FE   ++ P   V+ FD SEE M +R+L 
Sbjct: 95  ALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEK--EVCPCLCVINFDVSEEVMRKRLLK 152
Query: 144 R--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
           R     R DDN ETI KRF+ F E + PV+++Y+ + KV  IDA+  V  +FD V
Sbjct: 153 RAETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKV 207

>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5 Length = 199

Iteration: 1
 Score =  140 bits (354), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 76/183 (41%), Positives = 117/183 (63%), Gaps = 11/183 (6%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +GGPGSGKGTQC  +VE +G+THLS G+LLR E+ S SE   +I+++++ G +VPS + +
Sbjct: 18  IGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVL 77
Query: 87  KLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRIL- 142
           +LL++AM  S  D   FLIDG+PR  E +   E   +I +P+ V+  DCS + M  R+L 
Sbjct: 78  ELLKEAMVASLGDTRGFLIDGYPR--EVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQ 135
Query: 143 -NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF----DAVK 197
            +R+    DD  +TI KR + +  +S+PV+ YYE K ++ KI+A     +VF     A+ 
Sbjct: 136 MSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAID 195
Query: 198 AVF 200
           ++F
Sbjct: 196 SIF 198

>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex Aeolicus In Complex With Ap5a Length = 206

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 108/199 (54%), Gaps = 27/199 (13%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + +  G+ H+S GD+LR  ++ G+  G   +  ++ G++VP ++ I
Sbjct: 6   LGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLII 65
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRI-- 141
            L+++   + GN   + DGFPR  +   A + + +   ++ + VL F+  +E +  R+  
Sbjct: 66  ALIEEVFPKHGN--VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSG 123
Query: 142 --LNRNQG------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR 181
             +N   G                  REDD  E I+KR +V+ E + P+++YY+ KG +R
Sbjct: 124 RRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILR 183
Query: 182 KIDAAKPVAEVFDAVKAVF 200
            IDA+KPV EV+  V  V 
Sbjct: 184 IIDASKPVEEVYRQVLEVI 202

>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus Thermophilus Hb8 Length = 186

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 9/179 (5%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ + + +  G+  LS GD+LR  +  G+  G  ++ +++ G +VP ++ +
Sbjct: 10  LGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLIL 69
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVL---FFDCSEEEMERRILN 143
           +L+++ + E    + + DGFPR      A + +       +L     +  EEE+ RRIL 
Sbjct: 70  ELIREELAE----RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILR 125
Query: 144 RN--QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           R   +GR DDN ET+R+R +V+ E + P+V YYEA+G ++++D      EV+  ++A  
Sbjct: 126 RAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL 184

>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From Escherichia Coli And The Inhibitor Ap5a Refined At 1.9 Angstroms Resolution: A Model For A Catalytic Transition State Length = 214

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 36/201 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87  KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
            L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRR 124
Query: 146 -----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEA 176
                                          R+DD  ET+RKR   + + + P++ YY  
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSK 184
Query: 177 KG-----KVRKIDAAKPVAEV 192
           +      K  K+D  KPVAEV
Sbjct: 185 EAEAGNTKYAKVDGTKPVAEV 205

>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli, In Complex With Ap5a Length = 214

Iteration: 1
 Score =  107 bits (266), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 36/201 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87  KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
            L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG-INVDYVLEFDVPDELIVDRIVGRR 124
Query: 146 -----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEA 176
                                          R+DD  ET+RKR   + + + P++ YY  
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSK 184
Query: 177 KG-----KVRKIDAAKPVAEV 192
           +      K  K+D  KPVAEV
Sbjct: 185 EAEAGNTKYAKVDGTKPVAEV 205

>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 36/201 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG P +GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87  KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
            L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRR 124
Query: 146 -----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEA 176
                                          R+DD  ET+RKR   + + + P++ YY  
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSK 184
Query: 177 KG-----KVRKIDAAKPVAEV 192
           +      K  K+D  KPVAEV
Sbjct: 185 EAEAGNTKYAKVDGTKPVAEV 205

>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 99/201 (49%), Gaps = 36/201 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG   +GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87  KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
            L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRR 124
Query: 146 -----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEA 176
                                          R+DD  ET+RKR   + + + P++ YY  
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSK 184
Query: 177 KG-----KVRKIDAAKPVAEV 192
           +      K  K+D  KPVAEV
Sbjct: 185 EAEAGNTKYAKVDGTKPVAEV 205

>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus Marinus Length = 216

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 105/200 (52%), Gaps = 33/200 (16%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   I+E +   H+S GD+ RA IK+G+E G   ++ + +G +VP EVTI
Sbjct: 6   MGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEA-VTKI--EPEFVLFFDCSEEEMERR-- 140
            ++ + + +    K FL+DGFPR      A ++ +T +  + ++VL     +EE+ +R  
Sbjct: 66  GIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLT 125
Query: 141 -----------------------ILNRNQG----REDDNVETIRKRFKVFLESSLPVVQY 173
                                  I +++ G    R DD  ET++ R  V ++ + P++ +
Sbjct: 126 GRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVF 193
           Y  KG ++ ID  + + +VF
Sbjct: 186 YSQKGVLKDIDGQQDIKKVF 205

>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate Kinase Cgd5_3360 Length = 217

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 39/210 (18%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGTQC  I + +G  HLS GD+LR  IK+G++ G   +++I+ G  V  E+ +
Sbjct: 11  IGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVL 70
Query: 87  KLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEF------VLFFDCSEEEMER 139
            L+++  +     + F++DGFPR        E + KI  E       V++F+  + E+  
Sbjct: 71  GLVKEKFDLGVCVNGFVLDGFPRTIPQA---EGLAKILSEIGDSLTSVIYFEIDDSEIIE 127
Query: 140 RILNRNQ-----------------------------GREDDNVETIRKRFKVFLESSLPV 170
           RI  R                                R+DDN E ++ R  VF + + P+
Sbjct: 128 RISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPL 187
Query: 171 VQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           V++YE  G +++++A  P  EV + +K + 
Sbjct: 188 VKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217

>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From Plasmodium Falciparum Length = 243

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 103/201 (51%), Gaps = 37/201 (18%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGTQ  N+ +   Y HLS GDLLR   +  +E G  I+N+I EGK+V  ++ +
Sbjct: 35  LGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL 94
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN-----EENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140
            L+ + ++     K F++DG+PRN     + N+   +  TK++   V +F+  +E +  R
Sbjct: 95  SLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDG--VFYFNVPDEVLVNR 152
Query: 141 I----LNRNQGR-------------------------EDDNVETIRKRFKVFLESSLPVV 171
           I    +++  GR                         EDDN + ++KR  VF   + P++
Sbjct: 153 ISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLI 212
Query: 172 QYYEAKGKVRKIDAAKPVAEV 192
            YY+ K  +  +DA +P  ++
Sbjct: 213 SYYKNKNLLINLDATQPANDL 233

>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus Globisporus Length = 217

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 37/209 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA I+ G+E G   ++ + +G +VP EVTI
Sbjct: 6   MGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVT-----KIEPEFVLFFDCSEEEMERR 140
            ++++ + +S  D  FL+DGFPR      A + +      KI  E VL     +EE+  R
Sbjct: 66  GIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKI--EHVLNIQVEKEELIAR 123
Query: 141 ILNRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVV 171
           +  R                                R DDN +T+  R +V +  + P++
Sbjct: 124 LTGRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAPLL 183
Query: 172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
            +Y++K  +  I+  K + +VF  +  + 
Sbjct: 184 AFYDSKEVLVNINGQKDIKDVFKDLDVIL 212

>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between Mitochondrial Matrix Adenylate Kinase And Its Substrate Amp At 1.85 Angstroms Resolution Length = 226

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGT  + I +HF   HLS+GDLLR  +  G+E G + +  I +GK++P +V  
Sbjct: 12  MGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMT 71
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF--FDCSEEEMERRILNR 144
           +L+   ++      +L+DGFPR      A +   +I+    L   F+  ++ +  R ++ 
Sbjct: 72  RLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHP 131
Query: 145 NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKG 178
             G                         REDD  ET+ KR K +   + PV++YY  KG
Sbjct: 132 GSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEPVLEYYRKKG 190

>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1 Length = 227

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGT  + I  HF   HLS+GDLLR  +  G+E G + +  I +GK++P +V  
Sbjct: 13  MGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMT 72
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF--FDCSEEEMERRILNR 144
           +L    ++      +L+DGFPR      A +   +I+    L   F+  ++ +  R ++ 
Sbjct: 73  RLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHP 132
Query: 145 NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKG 178
             G                         REDD  ET+ KR K + + + PV++YY+ KG
Sbjct: 133 ASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKG 191

>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a Length = 217

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IV  +G  H+S GD+ RA +K G+  G   +  +  G +VP EVTI
Sbjct: 6   MGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTI 65
Query: 87  KLLQKAM-EESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEE-EMER-- 139
            ++++ + ++   + FL+DGFPR      A E +      + ++V+  D  ++  MER  
Sbjct: 66  GIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLT 125
Query: 140 -RILNRNQG-------------------------REDDNVETIRKRFKVFLESSLPVVQY 173
            R + RN G                         R DDN  T+  R +V ++   P+V +
Sbjct: 126 GRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           YE KG +R I+  + + +VF  ++ + 
Sbjct: 186 YEQKGYLRNINGEQDMEKVFADIRELL 212

>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2 Length = 242

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 100/208 (48%), Gaps = 33/208 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + E+F   HL+ GD+LRA + SGSE G  ++  +  GK+V  E+ +
Sbjct: 22  LGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVV 81
Query: 87  KLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPE---FVLFFDCSEEEMERRIL 142
           +L++K +E     + FL+DGFPR        + + +   E    V+ F   +  + RRI 
Sbjct: 82  ELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRIT 141
Query: 143 NR----NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQY 173
            R      G                         R DDN + ++ R + +   + P+++Y
Sbjct: 142 GRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTTPLIEY 201
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVFT 201
           Y  +G    IDA++    VF ++ A F+
Sbjct: 202 YRKRGIHSAIDASQTPDVVFASILAAFS 229

>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4 Length = 246

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 28/204 (13%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGT C  I ++FG  HLS+G  LR  IK+ +E G M +  I++  +VP  V  
Sbjct: 33  LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 92
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF--FDCSEEEMERRILNR 144
           +L+   +E      +L+DGFPR      A + + +++    L   F+  ++ + RR ++ 
Sbjct: 93  RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152
Query: 145 NQGR-------------------------EDDNVETIRKRFKVFLESSLPVVQYYEAKGK 179
             GR                         EDD  E +  R + + + + PV++ Y+++G 
Sbjct: 153 PSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGV 212
Query: 180 VRKIDAAKPVAEVFDAVKAVFTPK 203
           + +    +   +++  V  +F+ K
Sbjct: 213 LHQFSGTE-TNKIWPYVYTLFSNK 235

>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate Kinase Length = 181

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 98/171 (57%), Gaps = 8/171 (4%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + E  G   +S G+L R  I+ G++ G   +  +  G +VPS++T 
Sbjct: 6   LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTN 65
Query: 87  KLLQKAMEE-SGNDKFLIDGFPRN-EENRAAFEAVTK--IEPEFVLFFDCSEEEMERRIL 142
           +L+   +      + F++DG+PR+ E+ +A  E + +   + + VL F  SEE +  R+ 
Sbjct: 66  ELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERL- 124
Query: 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF 193
            + +GR DD  + I  R KV+ + + P+++YY  + +++ +DA   + EVF
Sbjct: 125 -KGRGRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVF 172

>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate Kinase Complexed With Two Molecules Of Adp And Mg Length = 201

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 98/171 (57%), Gaps = 8/171 (4%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + E  G   +S G+L R  I+ G++ G   +  +  G +VPS++T 
Sbjct: 26  LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTN 85
Query: 87  KLLQKAMEE-SGNDKFLIDGFPRN-EENRAAFEAVTK--IEPEFVLFFDCSEEEMERRIL 142
           +L+   +      + F++DG+PR+ E+ +A  E + +   + + VL F  SEE +  R+ 
Sbjct: 86  ELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERL- 144
Query: 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF 193
            + +GR DD  + I  R KV+ + + P+++YY  + +++ +DA   + EVF
Sbjct: 145 -KGRGRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVF 192

>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2 Length = 233

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 100/208 (48%), Gaps = 33/208 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + ++F   HL+ GD+LRA + SGSE G  ++  +  GK+V  E+ +
Sbjct: 22  LGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVL 81
Query: 87  KLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPE---FVLFFDCSEEEMERRIL 142
           +L++K +E     + FL+DGFPR        + + +   E    V+ F   +  + RRI 
Sbjct: 82  ELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRIT 141
Query: 143 NR----NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQY 173
            R      G                         R DDN + ++ R + +   + P+V+Y
Sbjct: 142 GRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEY 201
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVFT 201
           Y  +G    IDA++    VF ++ A F+
Sbjct: 202 YSKRGIHSAIDASQTPDVVFASILAAFS 229

>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a) Length = 222

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           G P SGKGTQC  I   +   H+SAGDLLRAEI +GSENG   +  +++G++VP E+ + 
Sbjct: 12  GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVN 71
Query: 88  LLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
           ++++ + +  +  + +L+DG+PR+     A E + +I P+  +  D  +E +  R++ R
Sbjct: 72  MVKERLRQPDAQENGWLLDGYPRSYSQAMALETL-EIRPDTFILLDVPDELLVERVVGR 129

>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p) Length = 231

Iteration: 1
 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 28/204 (13%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGT C  I ++FG  HLS+G  LR  IK+ +E G M +  I++  +VP  V  
Sbjct: 11  LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 70
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF--FDCSEEEMERRILNR 144
           +L+   +E      +L+DGFPR      A + + +++    L   F+  ++ + RR ++ 
Sbjct: 71  RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 130
Query: 145 NQGR-------------------------EDDNVETIRKRFKVFLESSLPVVQYYEAKGK 179
             GR                         EDD  E +  R + + + + PV++ Y+++G 
Sbjct: 131 PSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKPVIELYKSRGV 190
Query: 180 VRKIDAAKPVAEVFDAVKAVFTPK 203
           + +    +   +++  V  +F+ K
Sbjct: 191 LHQFSGTE-TNKIWPYVYTLFSNK 213

>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1 Length = 217

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +S  ++ FL+DGFPR   +             P ++V+     +EE+  R+ 
Sbjct: 66  GIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLAF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y++K  +  ++  + + +VF  VK + 
Sbjct: 186 YDSKEVLVNVNGQQDIQDVFADVKVIL 212

>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199rG213E) Length = 217

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y  KG +  ++  + + +V+  VK + 
Sbjct: 186 YSEKGYLANVNGQRDIQDVYADVKDLL 212

>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199r) Length = 216

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y  KG +  ++  + + +V+  VK + 
Sbjct: 186 YSEKGYLANVNGQRDIQDVYADVKDLL 212

>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (G214rQ199R) Length = 217

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y  KG +  ++  + + +V+  VK + 
Sbjct: 186 YSEKGYLANVNGQRDIQDVYADVKDLL 212

>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis Length = 217

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y  KG +  ++  + + +V+  VK + 
Sbjct: 186 YSEKGYLANVNGQQDIQDVYADVKDLL 212

>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (A193vQ199R) Length = 216

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y  KG +  ++  + + +V+  VK + 
Sbjct: 186 YSEKGYLVNVNGQRDIQDVYADVKDLL 212

>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3 Length = 216

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+     ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y+ KG +  ++  + + +V+  +K + 
Sbjct: 186 YDEKGYLVNVNGQQDIQDVYADLKVLL 212

>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast Ligated With Inhibitor Ap5a, Showing The Pathway Of Phosphoryl Transfer Length = 220

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 99/201 (49%), Gaps = 34/201 (16%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  ++ +
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87  KLLQKAM--EESGNDKFLIDGFPRN------------EENRAAFEAV-TKIEPEFVL--- 128
            +++  +    +  + F++DGFPR             E+     +A+  K++ E ++   
Sbjct: 70  NMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129
Query: 129 ---------------FFDCSEEEMERRILNRNQ-GREDDNVETIRKRFKVFLESSLPVVQ 172
                           F+  +E+M+  +       R DDN + ++KR   +   + P+V 
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVD 189
Query: 173 YYEAKGKVRKIDAAKPVAEVF 193
           +Y+  G    +DA++P A V+
Sbjct: 190 FYKKTGIWAGVDASQPPATVW 210

>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (T179iQ199R) Length = 217

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++   P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQIQPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y  KG +  ++  + + +V+  VK + 
Sbjct: 186 YSEKGYLANVNGQRDIQDVYADVKDLL 212

>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase Mutants Length = 220

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 99/201 (49%), Gaps = 34/201 (16%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  ++ +
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87  KLLQKAMEESG--NDKFLIDGFPRN------------EENRAAFEAV-TKIEPEFVL--- 128
            +++  +  +    + F++DGFPR             E+     +A+  K++ E ++   
Sbjct: 70  NMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129
Query: 129 ---------------FFDCSEEEMERRILNRNQ-GREDDNVETIRKRFKVFLESSLPVVQ 172
                           F+  +E+M+  +       R DDN + ++KR   +   + P+V 
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVD 189
Query: 173 YYEAKGKVRKIDAAKPVAEVF 193
           +Y+  G    +DA++P A V+
Sbjct: 190 FYKKTGIWAGVDASQPPATVW 210

>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia Pseu Length = 230

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 33/179 (18%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I E FG   +S GD LRA +K+G+  G   +    EGK+VP  + I
Sbjct: 14  LGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSLII 73
Query: 87  KLLQKAMEESG-NDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
            L+++ ++E+   + +L DGFPR   +  A  EA   I  ++VL  D    E+  R   R
Sbjct: 74  GLVKERLKEADCANGYLFDGFPRTIAQADAXKEAGVAI--DYVLEIDVPFSEIIERXSGR 131
Query: 145 NQG-----------------------------REDDNVETIRKRFKVFLESSLPVVQYY 174
                                           R+DD  ET++KR  V+   + P++ YY
Sbjct: 132 RTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYY 190

>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (q16l/q199r/) Length = 216

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 101/207 (48%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGT    IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y  KG +  ++  + + +V+  VK + 
Sbjct: 186 YSEKGYLANVNGQRDIQDVYADVKDLL 212

>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An Atp- Analogue Showing Domain Closure Over Atp Length = 220

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 98/201 (48%), Gaps = 34/201 (16%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  ++ +
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87  KLLQKAM--EESGNDKFLIDGFPRN------------EENRAAFEAV-TKIEPEFVL--- 128
            +++  +    +  + F++ GFPR             E+     +A+  K++ E ++   
Sbjct: 70  NMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129
Query: 129 ---------------FFDCSEEEMERRILNRNQGR-EDDNVETIRKRFKVFLESSLPVVQ 172
                           F+  +E+M+  +      +  DDN + ++KR   +   + P+V 
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIVD 189
Query: 173 YYEAKGKVRKIDAAKPVAEVF 193
           +Y+  G    +DA++P A V+
Sbjct: 190 FYKKTGIWAGVDASQPPATVW 210

>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 29  GP-GSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           GP GSGKGTQ   + + +   H+ +G + R  I  G+E G   +  I  G +VP ++TI 
Sbjct: 7   GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 88  LLQKAMEESGNDKFLIDGFPRNE-ENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
           ++ + +E  G D +L+DGFPRN  + +  FEA+ +  ++  FV+      E  + RI+ R
Sbjct: 67  MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR 126

>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 29  GP-GSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           GP GSGKGTQ   + + +   H+ +G + R  I  G+E G   +  I  G +VP ++TI 
Sbjct: 7   GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 88  LLQKAMEESGNDKFLIDGFPRNE-ENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
           ++ + +E  G D +L+DGFPRN  + +  FEA+ +  ++  FV+      E  + RI+ R
Sbjct: 67  MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	215
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	5e-98
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	3e-95
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	4e-95
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	3e-94
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	2e-92
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	1e-54
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	1e-53
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	6e-53
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	1e-52
2rgx_A	206	Adenylate kinase; transferase(phosphotransferase),	1e-52
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	1e-51
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	1e-51
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	3e-51
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	4e-51
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	4e-51
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	7e-51
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	1e-50
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	1e-49
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	2e-48
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	2e-44
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	1e-25
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	2e-22
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	5e-11
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	7e-11
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	9e-11
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	3e-09
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	2e-07
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	4e-07
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	3e-06
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	5e-06
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	5e-06
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	9e-06
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	3e-05
2ccj_A	205	DTMP kinase, thymidylate kinase; transferase, nucl	4e-05
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	5e-05
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	5e-05
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	8e-05
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	9e-05
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	1e-04
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	2e-04
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	2e-04
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	3e-04

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194

 Score =  282 bits (723), Expect = 5e-98
 Identities = 101/186 (54%), Positives = 132/186 (70%), Gaps = 4/186 (2%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
            KP VVFVLGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+
Sbjct: 4   SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGE 63

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEE 136
           IVPS VT+KLL+ A++ +    FL+DGFPRNEEN  ++E      ++ +FVLFFDC EE 
Sbjct: 64  IVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEV 123

Query: 137 MERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFD 194
           M +R+L R +  GR DDN+E+I+KRF  F   +  V+ +Y    KV+ I A + V EV++
Sbjct: 124 MTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYN 183

Query: 195 AVKAVF 200
            V+ +F
Sbjct: 184 DVENLF 189

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Length = 199

 Score =  275 bits (705), Expect = 3e-95
 Identities = 73/187 (39%), Positives = 115/187 (61%), Gaps = 5/187 (2%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           ++K  ++F++GGPGSGKGTQC  +VE +G+THLS G+LLR E+ S SE   +I+++++ G
Sbjct: 9   LRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERG 68

Query: 78  KIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135
            +VPS + ++LL++AM  S  D   FLIDG+PR  +    F      +P+ V+  DCS +
Sbjct: 69  DLVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIG-DPQLVICMDCSAD 127

Query: 136 EMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF 193
            M  R+L    +    DD  +TI KR + +  +S+PV+ YYE K ++ KI+A     +VF
Sbjct: 128 TMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVF 187

Query: 194 DAVKAVF 200
             +    
Sbjct: 188 LQLCTAI 194

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Length = 196

 Score =  274 bits (704), Expect = 4e-95
 Identities = 81/186 (43%), Positives = 117/186 (62%), Gaps = 5/186 (2%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           KK  ++FV+GGPGSGKGTQC  IV+ +GYTHLS GDLLR+E+ SGS  G  +  ++++G+
Sbjct: 7   KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQ 66

Query: 79  IVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136
           +VP E  + +L+ AM    N    FLIDG+PR  +    FE     +P  +L+ D   E 
Sbjct: 67  LVPLETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG-QPTLLLYVDAGPET 125

Query: 137 MERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFD 194
           M +R+L R +  GR DDN ETI+KR + + +++ PV+ +YE +G VRK++A   V  VF 
Sbjct: 126 MTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFS 185

Query: 195 AVKAVF 200
            V    
Sbjct: 186 QVCTHL 191

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203

 Score =  272 bits (699), Expect = 3e-94
 Identities = 90/203 (44%), Positives = 133/203 (65%), Gaps = 7/203 (3%)

Query: 7   TPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSE 65
           T    +    +  + +V+FVLGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+
Sbjct: 1   TAATTSQPAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQ 60

Query: 66  NGTMIQNMIKEGKIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKI 122
            G +I+N IKEG+IVP E+T+ LL+ A+ +   +   KFLIDGFPR  +   +FE     
Sbjct: 61  YGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIV- 119

Query: 123 EPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
           E +F+LFFDC E+ M  R+L R +  GR DDN+E+I+KRF  F E+S+PV++Y+E K KV
Sbjct: 120 ESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKV 179

Query: 181 RKIDAAKPVAEVFDAVKAVFTPK 203
            ++   + V +V+  V+      
Sbjct: 180 VRVRCDRSVEDVYKDVQDAIRDS 202

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Length = 196

 Score =  268 bits (687), Expect = 2e-92
 Identities = 102/191 (53%), Positives = 133/191 (69%), Gaps = 10/191 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFD 131
           IVP E+TI LL++ M++     +  +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           C+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V
Sbjct: 122 CNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSV 181

Query: 190 AEVFDAVKAVF 200
            EVFD V  +F
Sbjct: 182 DEVFDEVVQIF 192

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Length = 186

 Score =  171 bits (436), Expect = 1e-54
 Identities = 61/178 (34%), Positives = 105/178 (58%), Gaps = 9/178 (5%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ + + +  G+  LS GD+LR  +  G+  G  ++ +++ G +VP ++ +
Sbjct: 10  LGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLIL 69

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILN 143
           +L+++ + E    + + DGFPR      A + +   T      V+  +  EEE+ RRIL 
Sbjct: 70  ELIREELAE----RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILR 125

Query: 144 RN--QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           R   +GR DDN ET+R+R +V+ E + P+V YYEA+G ++++D      EV+  ++A 
Sbjct: 126 RAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAA 183

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Length = 246

 Score =  171 bits (435), Expect = 1e-53
 Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 32/212 (15%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGT C  I ++FG  HLS+G  LR  IK+ +E G M +  I++  +VP  V  
Sbjct: 33  LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 92

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-- 144
           +L+   +E      +L+DGFPR      A + + ++  + V+  +   E ++ R+  R  
Sbjct: 93  RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEV--DLVISLNIPFETLKDRLSRRWI 150

Query: 145 ----------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQYYEAK 177
                             G           +EDD  E +  R + + + + PV++ Y+++
Sbjct: 151 HPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSR 210

Query: 178 GKVRKIDAAKPVAEVFDAVKAVFTPKDEKVKH 209
           G + +    +   +++  V  +F+ K   ++ 
Sbjct: 211 GVLHQFSGTET-NKIWPYVYTLFSNKITPIQS 241

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Length = 227

 Score =  168 bits (429), Expect = 6e-53
 Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 32/212 (15%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGT  + I  HF   HLS+GDLLR  +  G+E G + +  I +GK++P +V  
Sbjct: 13  MGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMT 72

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-- 144
           +L    ++      +L+DGFPR      A +   +I  + V+  +   E +++R+  R  
Sbjct: 73  RLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQI--DTVINLNVPFEVIKQRLTARWI 130

Query: 145 ----------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQYYEAK 177
                             G           REDD  ET+ KR K + + + PV++YY+ K
Sbjct: 131 HPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKK 190

Query: 178 GKVRKIDAAKPVAEVFDAVKAVFTPKDEKVKH 209
           G +      +   +++  V A    K  +   
Sbjct: 191 GVLETFSGTET-NKIWPYVYAFLQTKVPQRSQ 221

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Length = 201

 Score =  167 bits (425), Expect = 1e-52
 Identities = 58/203 (28%), Positives = 98/203 (48%), Gaps = 9/203 (4%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
           MG+        +          V+  LG PG+GKGTQ   + E  G   +S G+L R  I
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMRVLL-LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNI 59

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAV 119
           + G++ G   +  +  G +VPS++T +L+   +        F++DG+PR+ E   A   +
Sbjct: 60  EEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEM 119

Query: 120 ---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176
                 + + VL F  SEE +  R+  R  GR DD  + I  R KV+ + + P+++YY  
Sbjct: 120 LERRGTDIDAVLEFRVSEEVLLERLKGR--GRADDTDDVILNRMKVYRDETAPLLEYY-- 175

Query: 177 KGKVRKIDAAKPVAEVFDAVKAV 199
           + +++ +DA   + EVF      
Sbjct: 176 RDQLKTVDAVGTMDEVFARALRA 198

>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, nucleo binding, transferase; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A Length = 206

 Score =  167 bits (425), Expect = 1e-52
 Identities = 61/199 (30%), Positives = 105/199 (52%), Gaps = 27/199 (13%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + +  G+ H+S GD+LR  ++ G+  G   +  ++ G++VP ++ I
Sbjct: 6   LGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLII 65

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILN 143
            L+++   +  +   + DGFPR  +   A + + +   ++ + VL F+  +E +  R+  
Sbjct: 66  ALIEEVFPK--HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSG 123

Query: 144 RN----------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR 181
           R                         REDD  E I+KR +V+ E + P+++YY+ KG +R
Sbjct: 124 RRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILR 183

Query: 182 KIDAAKPVAEVFDAVKAVF 200
            IDA+KPV EV+  V  V 
Sbjct: 184 IIDASKPVEEVYRQVLEVI 202

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Length = 217

 Score =  165 bits (420), Expect = 1e-51
 Identities = 59/207 (28%), Positives = 100/207 (48%), Gaps = 33/207 (15%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGTQC  I + +G  HLS GD+LR  IK+G++ G   +++I+ G  V  E+ +
Sbjct: 11  IGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVL 70

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            L+++  +       F++DGFPR          +          V++F+  + E+  RI 
Sbjct: 71  GLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERIS 130

Query: 143 NR------------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQY 173
            R                    G           R+DDN E ++ R  VF + + P+V++
Sbjct: 131 GRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKF 190

Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           YE  G +++++A  P  EV + +K + 
Sbjct: 191 YEDLGILKRVNAKLPPKEVTEQIKKIL 217

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Length = 243

 Score =  166 bits (422), Expect = 1e-51
 Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 33/207 (15%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGTQ  N+ +   Y HLS GDLLR   +  +E G  I+N+I EGK+V  ++ +
Sbjct: 35  LGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL 94

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            L+ + ++     K F++DG+PRN +       + +    + + V +F+  +E +  RI 
Sbjct: 95  SLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRIS 154

Query: 143 NR------------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQY 173
            R                                REDDN + ++KR  VF   + P++ Y
Sbjct: 155 GRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISY 214

Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y+ K  +  +DA +P  ++   +    
Sbjct: 215 YKNKNLLINLDATQPANDLEKKISQHI 241

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Length = 216

 Score =  163 bits (416), Expect = 3e-51
 Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 33/207 (15%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   I+E +   H+S GD+ RA IK+G+E G   ++ + +G +VP EVTI
Sbjct: 6   MGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTI 65

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            ++ + + +    K FL+DGFPR      A +++      + ++VL     +EE+ +R+ 
Sbjct: 66  GIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLT 125

Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DD  ET++ R  V ++ + P++ +
Sbjct: 126 GRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDF 185

Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y  KG ++ ID  + + +VF  +  + 
Sbjct: 186 YSQKGVLKDIDGQQDIKKVFVDINDLL 212

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Length = 216

 Score =  163 bits (416), Expect = 4e-51
 Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 33/207 (15%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR      A E + +      ++V+     ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLT 125

Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDF 185

Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y+ KG +  ++  + + +V+  +K + 
Sbjct: 186 YDEKGYLVNVNGQQDIQDVYADLKVLL 212

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Length = 220

 Score =  163 bits (416), Expect = 4e-51
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 34/208 (16%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  ++ +
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69

Query: 87  KLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRI 141
            +++  +  +   K  F++DGFPR        + + K      E  +     +E +  RI
Sbjct: 70  NMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129

Query: 142 LNR------------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQ 172
             R                                R DDN + ++KR   +   + P+V 
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVD 189

Query: 173 YYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           +Y+  G    +DA++P A V+  +    
Sbjct: 190 FYKKTGIWAGVDASQPPATVWADILNKL 217

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Length = 222

 Score =  163 bits (415), Expect = 7e-51
 Identities = 57/219 (26%), Positives = 102/219 (46%), Gaps = 30/219 (13%)

Query: 17  TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE 76
            +  P  V + G P SGKGTQC  I   +   H+SAGDLLRAEI +GSENG   +  +++
Sbjct: 1   ALADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEK 60

Query: 77  GKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134
           G++VP E+ + ++++ + +    +  +L+DG+PR+     A E + +I P+  +  D  +
Sbjct: 61  GQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETL-EIRPDTFILLDVPD 119

Query: 135 EEMERRILNRN-------------------------QGREDDNVETIRKRFKVFLESSLP 169
           E +  R++ R                            R DD  E ++ R + + ++   
Sbjct: 120 ELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIES 179

Query: 170 VVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKVK 208
           ++  Y  +  + K+     V  VF  +  +     EK  
Sbjct: 180 LLSTY--ENIIVKVQGDATVDAVFAKIDELLGSILEKKN 216

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Length = 233

 Score =  163 bits (414), Expect = 1e-50
 Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 33/225 (14%)

Query: 9   VKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGT 68
           V  A+      K     +LG PG+GKGTQ   + ++F   HL+ GD+LRA + SGSE G 
Sbjct: 4   VPAAEPVPESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGK 63

Query: 69  MIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEP 124
            ++  +  GK+V  E+ ++L++K +E       FL+DGFPR        + + +    + 
Sbjct: 64  KLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKL 123

Query: 125 EFVLFFDCSEEEMERRILNR------------------NQG-----------REDDNVET 155
           + V+ F   +  + RRI  R                                R DDN + 
Sbjct: 124 DSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKA 183

Query: 156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           ++ R + +   + P+V+YY  +G    IDA++    VF ++ A F
Sbjct: 184 LKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAF 228

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Length = 214

 Score =  160 bits (406), Expect = 1e-49
 Identities = 67/208 (32%), Positives = 104/208 (50%), Gaps = 36/208 (17%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG P +GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR- 144
            L+++ + +      FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA-GINVDYVLEFDVPDELIVDRIVGRR 124

Query: 145 -----------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQYYEA 176
                             +G           R+DD  ET+RKR   + + + P++ YY  
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSK 184

Query: 177 KG-----KVRKIDAAKPVAEVFDAVKAV 199
           +      K  K+D  KPVAEV   ++ +
Sbjct: 185 EAEAGNTKYAKVDGTKPVAEVRADLEKI 212

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 230

 Score =  157 bits (399), Expect = 2e-48
 Identities = 61/214 (28%), Positives = 94/214 (43%), Gaps = 42/214 (19%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I
Sbjct: 14  LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLII 73

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR- 144
            L+++ ++E+     +L DGFPR      A +    +  ++VL  D    E+  R+  R 
Sbjct: 74  GLVKERLKEADCANGYLFDGFPRTIAQADAMKEA-GVAIDYVLEIDVPFSEIIERMSGRR 132

Query: 145 -----------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQYYEA 176
                             +G           R+DD  ET++KR  V+   + P++ YY  
Sbjct: 133 THPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGD 192

Query: 177 KG-----------KVRKIDAAKPVAEVFDAVKAV 199
                          RKI     V E+   V+  
Sbjct: 193 WARRGAENGLKAPAYRKISGLGAVEEIRARVRRA 226

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Length = 223

 Score =  146 bits (371), Expect = 2e-44
 Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 43/216 (19%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
            G  GSGKGTQ   + + +   H+ +G + R  I  G+E G   +  I  G +VP ++TI
Sbjct: 6   FGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITI 65

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILN 143
            ++ + +E  G D +L+DGFPRN           +   ++  FV+      E  + RI+ 
Sbjct: 66  PMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMG 125

Query: 144 RN-------------------------------QGREDDNVE-TIRKRFKVF---LESSL 168
           R                                  R DD  E  I KR  ++   ++ +L
Sbjct: 126 RRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTL 185

Query: 169 PVVQYYEAKG-----KVRKIDAAKPVAEVFDAVKAV 199
               YY+           ++D    +  + D + A 
Sbjct: 186 AAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQ 221

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 97.2 bits (242), Expect = 1e-25
 Identities = 25/138 (18%), Positives = 58/138 (42%), Gaps = 4/138 (2%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-GKIVP 81
           V+ + G PGSGK    A +++  G   +   D++R      ++ G  + +  K   +I  
Sbjct: 3   VILITGMPGSGKSEF-AKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYG 61

Query: 82  SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141
             V  +L  + +  S +D  + DG  R+      F+     +  +++      +   +R+
Sbjct: 62  DGVVARLCVEELGTSNHDLVVFDGV-RSLAEVEEFKR-LLGDSVYIVAVHSPPKIRYKRM 119

Query: 142 LNRNQGREDDNVETIRKR 159
           + R +  +   +  + +R
Sbjct: 120 IERLRSDDSKEISELIRR 137

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 89.2 bits (221), Expect = 2e-22
 Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 11/155 (7%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           +  + G  G GK T C  +      +    GD++   +  G           +   +   
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESD---ELLALTWK 60

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF---VLFFDCSEEEMER 139
            +T          + ND  ++D     +E  A  + V     +     +    + EE+ R
Sbjct: 61  NITDLT--VNFLLAQND-VVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLR 117

Query: 140 RILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY 174
           R   R   +++   E   +  + F    +    +Y
Sbjct: 118 RDALR--KKDEQMGERCLELVEEFESKGIDERYFY 150

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 58.3 bits (141), Expect = 5e-11
 Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 24/181 (13%)

Query: 21  PTVVFVLGGPGSGKGTQCANIV-EHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
             ++  +G PGSGK T     + ++ G+ +++  D  R  I +  E         KEG +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERDEYKYTKKKEGIV 60

Query: 80  VPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEE 135
             + +     +  +    + K  +I     N E R A+E        + E    FD    
Sbjct: 61  --TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHK-VFDVPWT 117

Query: 136 EMERRILNRNQGREDDNV--ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF 193
           E+ +    RN  R    V  + +R  +K      L +  Y             KP A +F
Sbjct: 118 ELVK----RNSKRGTKAVPIDVLRSMYKSM-REYLGLPVYNG--------TPGKPKAVIF 164

Query: 194 D 194
           D
Sbjct: 165 D 165

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 58.0 bits (140), Expect = 7e-11
 Identities = 23/183 (12%), Positives = 53/183 (28%), Gaps = 12/183 (6%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS--GSENGTMIQNMIKE 76
           + P ++ V G P +GK T    +        LS  D  +  +    G  +    + +   
Sbjct: 3   QTPALIIVTGHPATGKTTLSQALATGLRLPLLS-KDAFKEVMFDGLGWSDREWSRRVGAT 61

Query: 77  GKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSE 134
                  +        + +SG    +++   R + +    + +          +    S 
Sbjct: 62  AI----MMLYHTAATIL-QSGQS-LIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASG 115

Query: 135 EEMERRILNRNQGREDDNVETIRKRFKVFLESSLP-VVQYYEAKGKVRKIDAAKPVAEVF 193
           + +  RIL+R             +             +      G +  +D   P     
Sbjct: 116 DVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDM 175

Query: 194 DAV 196
           +A+
Sbjct: 176 NAI 178

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 57.7 bits (139), Expect = 9e-11
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 19/133 (14%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + + G PG GK T    +    G  +++ GDL R E            +   +  I+  +
Sbjct: 14  ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLY------DGYDEEYDCPILDED 67

Query: 84  VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143
             +  L   M E G    ++D    +      F  V      FVL        +  R+  
Sbjct: 68  RVVDELDNQMREGG---VIVDYHGCDFFPERWFHIV------FVL--RTDTNVLYERLET 116

Query: 144 RNQGRE--DDNVE 154
           R    +   DN++
Sbjct: 117 RGYNEKKLTDNIQ 129

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Length = 192

 Score = 53.9 bits (129), Expect = 3e-09
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 12/147 (8%)

Query: 23  VVFVLGGPGSGKGTQCANIVE-----HFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           VV V G PG G  T     ++        Y  +S G ++    K  +        M K  
Sbjct: 5   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSD-RDQMRKMD 63

Query: 78  KIVPSEVTIKLLQKAMEESGNDKFLIDG-----FPRNEENRAAFEAVTKIEPEFVLFFDC 132
                 +     +K  E +      +D       P+          + ++ P+ ++  + 
Sbjct: 64  PETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVET 123

Query: 133 SEEE-MERRILNRNQGREDDNVETIRK 158
           + +E + RR+ +  + R+ D   TI +
Sbjct: 124 TGDEILMRRMSDETRVRDLDTASTIEQ 150

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 9/131 (6%)

Query: 21  PTVVFVLGGPGSGKGTQCANIV-EHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
             ++  +G PGSGK T     + ++ G+ +++  D  R  I +  E         KEG +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERDEYKYTKKKEGIV 60

Query: 80  VPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEE 135
             + +     +  +    + K  +I     N E R A+E   K    + E    FD    
Sbjct: 61  --TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHK-VFDVPWT 117

Query: 136 EMERRILNRNQ 146
           E+ +R   R  
Sbjct: 118 ELVKRNSKRGT 128

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 48.4 bits (114), Expect = 4e-07
 Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 10/173 (5%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKE 76
           K+P  + + G  G+GK T      + F      +                    ++ ++ 
Sbjct: 30  KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEY 89

Query: 77  GKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFV--LFFDCSE 134
            K    ++   L+ K      N   LI+G  R  +       + K +   V         
Sbjct: 90  TKDFAGKMVESLVTKLSSLGYN--LLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKP 147

Query: 135 EEMERRILNRNQGREDDNV----ETIRKRFKVFLESSLPVVQYYEAKGKVRKI 183
           E      L R +     N      T ++     +   +   +  E      +I
Sbjct: 148 ELSYLSTLIRYEELYIINPNQARATPKEHHDFIVNHLVDNTRKLEELAIFERI 200

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 36/206 (17%), Positives = 68/206 (33%), Gaps = 22/206 (10%)

Query: 7   TPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSEN 66
           +   +++A    + P  + V+G  GSGK +    I E  GY  +    L   E       
Sbjct: 4   SIEYKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPE------- 56

Query: 67  GTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPE 125
                  + EG  +  +     L    E  +  +  ++         R            
Sbjct: 57  ---NIRKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLA 113

Query: 126 FVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDA 185
           FV F   SE  +  R+ +R       ++          L++ L  ++    + +   +D 
Sbjct: 114 FV-FLHGSESVLAERMHHRTGHFMPSSL----------LQTQLETLEDPRGEVRTVAVDV 162

Query: 186 AKPVAEVFDAVKAVFTPKDEKVKHYS 211
           A+P+AE+     A      E +   S
Sbjct: 163 AQPLAEIVREALAGLARLAENLYFQS 188

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Length = 194

 Score = 44.7 bits (105), Expect = 5e-06
 Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 15/151 (9%)

Query: 23  VVFVLGGPGSGKGTQCANIVE-----HFGYTHLSAGDLLRAEIKSG---SENGTMIQNMI 74
           +  V G PG GK T  A + E           ++ GD + A         +   M +  +
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 75  KEGKIVPSEVTIKLLQKAMEESGNDKFLIDG-----FPRNEENRAAFEAVTKIEPEFVLF 129
           ++ K +  +    + ++A    G     ID       P           +T+I P  +  
Sbjct: 63  EKQKKLQIDAAKGIAEEA-RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFL 121

Query: 130 FDCSEEE-MERRILNRNQGREDDNVETIRKR 159
            +   +  + R+  +  + R D + E++   
Sbjct: 122 LEADPKIILSRQKRDTTRNRNDYSDESVILE 152

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 44.7 bits (105), Expect = 5e-06
 Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 12/156 (7%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
              ++ + G PGSGK T    +    G    H    D L   IK G  +  + Q+  +  
Sbjct: 8   GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH-SDDLWGYIKHGRIDPWLPQSHQQNR 66

Query: 78  KIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137
            I+        +     + G    ++DG  R +   A       +     +    +  E 
Sbjct: 67  MIMQ---IAADVAGRYAKEGYF-VILDGVVRPDWLPAFTALARPLH---YIVLRTTAAEA 119

Query: 138 ERRILNRNQGREDD--NVETIRKRFKVFLESSLPVV 171
             R L+R      D   V  +  +F         V+
Sbjct: 120 IERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVL 155

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Length = 184

 Score = 43.6 bits (102), Expect = 9e-06
 Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 20/145 (13%)

Query: 15  TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNM 73
           ++   K   + + G PG+GK +    I     G+ HL  G L++       EN    +  
Sbjct: 4   SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK-------ENHFYTEYD 56

Query: 74  IKEGKIVPSEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD 131
            +    +  E     L   ME         ++D            E   +     V+   
Sbjct: 57  TELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSS--------ELFPERWFHMVVVLH 108

Query: 132 CSEEEMERRILNRNQGRE--DDNVE 154
            S E +  R+  R        +N+E
Sbjct: 109 TSTEVLFERLTKRQYSEAKRAENME 133

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Length = 229

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 32/220 (14%), Positives = 70/220 (31%), Gaps = 63/220 (28%)

Query: 28  GGPGSGKGTQCANIVEHF--GYTHL--------SAGDLLRAEIKSGSENGTM-------- 69
           G  GSGK T    +       Y  +          G+ +R  +  G++            
Sbjct: 33  GPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAA 92

Query: 70  -----IQNMIK----EGKIVPSEVTIKLLQKAMEESGNDKFLID----------GFPRNE 110
                +   +     EGK+V                  D++ ID          G    E
Sbjct: 93  SRREHLVLKVIPALKEGKVVLC----------------DRY-IDSSLAYQGYARGIGVEE 135

Query: 111 ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGR---EDDNVETIRKRFKVFLESS 167
                  A+  + P+  ++ + S E    RI+  ++ +   + ++++   K  + + E  
Sbjct: 136 VRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEII 195

Query: 168 LPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKV 207
                 +    + + ++A +P+  V +          EK+
Sbjct: 196 ------HNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI 229

>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A* Length = 205

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 32/220 (14%), Positives = 70/220 (31%), Gaps = 63/220 (28%)

Query: 28  GGPGSGKGTQCANIVEHF--GYTHL--------SAGDLLRAEIKSGSENGTM-------- 69
           G  GSGK T    +       Y  +          G+ +R  +  G++            
Sbjct: 9   GPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAA 68

Query: 70  -----IQNMIK----EGKIVPSEVTIKLLQKAMEESGNDKFLID----------GFPRNE 110
                +   +     EGK+V                  D++ ID          G    E
Sbjct: 69  SRREHLVLKVIPALKEGKVVLC----------------DRY-IDSSLAYQGYARGIGVEE 111

Query: 111 ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGR---EDDNVETIRKRFKVFLESS 167
                  A+  + P+  ++ + S E    RI+  ++ +   + ++++   K  + + E  
Sbjct: 112 VRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEII 171

Query: 168 LPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKV 207
                 +    + + ++A +P+  V +          EK+
Sbjct: 172 ------HNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI 205

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Length = 287

 Score = 42.3 bits (98), Expect = 5e-05
 Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 6/145 (4%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA-GDLLRAEIKSGSE-NGTMIQNMIK 75
           V+ PT   + G PGSGK +  + I E      +    D  + +  +  E      ++++K
Sbjct: 30  VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVK 89

Query: 76  EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIE--PEFVLFFDCS 133
                 + +T  ++ +  ++  N   +I+G  R  +       + + +     +      
Sbjct: 90  HVTPYSNRMTEAIISRLSDQGYN--LVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVP 147

Query: 134 EEEMERRILNRNQGREDDNVETIRK 158
           +       + R +    D+  T R 
Sbjct: 148 KINSYLGTIERYETMYADDPMTARA 172

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* Length = 216

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 32/197 (16%), Positives = 66/197 (33%), Gaps = 34/197 (17%)

Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           G   +GK TQC  + +           LL+   +  +  G +I   + +     S+  I 
Sbjct: 12  GLDRTGKTTQCNILYKKLQ----PNCKLLKFP-ERSTRIGGLINEYLTDDSFQLSDQAIH 66

Query: 88  LL------------QKAMEESGN---DKFLID---------GFPRNEENRAAFEAVTKIE 123
           LL            +K + E  N   D++ +          G    + +      V  ++
Sbjct: 67  LLFSANRWEIVDKIKKDLLEGKNIVMDRY-VYSGVAYSAAKGTNGMDLDWCLQPDVGLLK 125

Query: 124 PEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKI 183
           P+  LF    + +           R  + V+   K  + F++  L   +  +    +  +
Sbjct: 126 PDLTLFLSTQDVDNNAEKSGFGDERY-ETVKFQEKVKQTFMK--LLDKEIRKGDESITIV 182

Query: 184 DAA-KPVAEVFDAVKAV 199
           D   K + EV   +  +
Sbjct: 183 DVTNKGIQEVEALIWQI 199

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 23/150 (15%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNM 73
               ++ + G PG GK T   N+ +           L   DL+R       E        
Sbjct: 2   GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG-SDLIRESFPVWKEK------- 53

Query: 74  IKEGKIVPSEVTIKLLQKAMEESGNDKFLI--DGFPRNEENRAAFEAVTKIEPEF-VLFF 130
                    E   K   + ++ +  + ++I  D    N   R       K    + +++ 
Sbjct: 54  -------YEEFIKKSTYRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYL 106

Query: 131 DCSEEEMERRILNRNQGREDDNVETIRKRF 160
             S + + RR + R +   ++ ++ + ++F
Sbjct: 107 KASLDVLIRRNIERGEKIPNEVIKKMYEKF 136

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 40.5 bits (94), Expect = 9e-05
 Identities = 17/133 (12%), Positives = 34/133 (25%), Gaps = 9/133 (6%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
              ++ + GG  +GK      +       +      D L   +    ++         +G
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG-VDSLIEAMPLKMQSAEGGIEFDADG 60

Query: 78  KIVPSEVTIKLLQ------KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD 131
            +        L         AM  +G    + D F      +  + +         +   
Sbjct: 61  GVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVR 120

Query: 132 CSEEEMERRILNR 144
           C     E R   R
Sbjct: 121 CDGAVAEGRETAR 133

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Length = 214

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 31/220 (14%), Positives = 49/220 (22%), Gaps = 58/220 (26%)

Query: 28  GGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMI---KEGKIVP 81
           G  G+GK T    +   F   G +       L    + G      I       + G +  
Sbjct: 7   GVDGAGKRTLVEKLSGAFRAAGRSVA----TLA-FPRYGQSVAADIAAEALHGEHGDLAS 61

Query: 82  SEVTIKLL------------QKAMEE-----------------SGNDKFLIDGFPRNEEN 112
           S   +  L            Q                      +        G       
Sbjct: 62  SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQ 121

Query: 113 RAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ---GREDDNVET-------IRKRFKV 162
           R  F  +   +P++ +    S E    R   R Q   GR  DN E            +  
Sbjct: 122 RIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAE 181

Query: 163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202
                          G+   + A      +   +     P
Sbjct: 182 LAAQGWG--------GRWLVVGADVDPGRLAATLAPPDVP 213

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Length = 236

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 33/216 (15%), Positives = 62/216 (28%), Gaps = 68/216 (31%)

Query: 28  GGPGSGKGTQCANIVEHF---GYTHL---------SAGDLLRAEIKSGSENGTM------ 69
           G  G+GK T    +VE     G  H+            + LRA +K       +      
Sbjct: 34  GLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITEL 93

Query: 70  --------------IQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLID----------G 105
                         I+  +  G+ V                  D+               
Sbjct: 94  LLVYAARVQLVENVIKPALARGEWVVG----------------DRH-DMSSQAYQGGGRQ 136

Query: 106 FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQG-R-EDDNVETIRKRFKVF 163
              +        A+   +P+  L+ D   +    R   R +  R E  ++    +  + +
Sbjct: 137 IAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEKMDISFFERARERY 196

Query: 164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           LE +        +   V  IDAA+ + +V   ++  
Sbjct: 197 LELA-------NSDDSVVMIDAAQSIEQVTADIRRA 225

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 31/204 (15%), Positives = 62/204 (30%), Gaps = 29/204 (14%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
            G  + T      + +T +    V V+G  GSGK T    + +  G     A      E 
Sbjct: 9   SGVDLGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPEN 68

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
            +  + G  + +  +     P   ++     A  ++G    +     +    R       
Sbjct: 69  IATMQRGIPLTDEDRW----PWLRSLAEWMDARADAGVSTIITCSALK-RTYRDVLREG- 122

Query: 121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY------Y 174
                  L  D   E ++ R+  R +G               F+ +SL   Q        
Sbjct: 123 -PPSVDFLHLDGPAEVIKGRMSKR-EGH--------------FMPASLLQSQLATLEALE 166

Query: 175 EAKGKVRKIDAAKPVAEVFDAVKA 198
             +  +  +D  +P  ++ +    
Sbjct: 167 PDESGIV-LDLRQPPEQLIERALT 189

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Length = 195

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 46/204 (22%)

Query: 28  GGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP--- 81
           G  GSGK TQ   + E+    GY       L R E   G++ G +++ ++   ++     
Sbjct: 7   GIDGSGKTTQAKKLYEYLKQKGYFVS----LYR-EP-GGTKVGEVLREILLTEELDERTE 60

Query: 82  --------SEVTIKLLQKAMEESGNDKFLID--------------GFPRNEENRAAFEAV 119
                   S++  + +   ++   +   ++D              G            A 
Sbjct: 61  LLLFEASRSKLIEEKIIPDLKR--DKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFAT 118

Query: 120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK 179
             ++P+  L  D   +   RR+  +N     +N E + K  K FLE +       + +  
Sbjct: 119 RGVKPDITLLLDIPVDIALRRLKEKN---RFENKEFLEKVRKGFLELA-------KEEEN 168

Query: 180 VRKIDAAKPVAEVFDAVKAVFTPK 203
           V  IDA+    EVF  +    +  
Sbjct: 169 VVVIDASGEEEEVFKEILRALSGV 192

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 106 FPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQG----REDDNVETIRKRF 160
           F   E      + ++  E  FV  FDC + ++M + IL++ +        D V    + F
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 161 KVFLESSLPVVQYY 174
              L     +VQ +
Sbjct: 69  WTLLSKQEEMVQKF 82

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 3uwk_A* 3uwo_A* 3uxm_A* Length = 213

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 35/223 (15%), Positives = 65/223 (29%), Gaps = 65/223 (29%)

Query: 28  GGPGSGKGTQCANIVEHF---GYTHL--------SAGDLLRAEIKSGSENG--------- 67
           G  G+GK T    + E     G               + +R  + + S+           
Sbjct: 13  GPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLL 72

Query: 68  ----------TMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLID----------GFP 107
                      +I+  +  G +V                  D+F  D          G P
Sbjct: 73  MFAARAQHLAGVIRPALARGAVVLC----------------DRF-TDATYAYQGGGRGLP 115

Query: 108 RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQG-R-EDDNVETIRKRFKVFLE 165
                         + P+  L FD   E    R   R +  R E ++        + +L+
Sbjct: 116 EARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQ 175

Query: 166 SSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKVK 208
            +       +A  + + +DA  P+AEV   +  +     E++ 
Sbjct: 176 RA------AQAPERYQVLDAGLPLAEVQAGLDRLLPNLLERLN 212

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	215
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	100.0
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	100.0
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	100.0
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.97
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.97
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.97
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.97
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.97
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.97
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.97
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.96
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.96
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.96
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.96
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.96
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.96
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.96
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.95
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.95
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.95
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.89
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.89
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.83
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.82
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.82
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.81
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.81
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.81
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.8
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.8
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.8
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.8
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.79
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.79
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.79
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.79
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.78
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.78
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.78
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.77
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.77
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.77
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.77
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.76
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.76
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.76
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.75
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.75
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.75
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.75
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.74
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.73
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.73
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.72
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	99.72
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.72
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.72
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.72
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.71
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.71
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.69
1via_A	175	Shikimate kinase; structural genomics, transferase	99.69
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.69
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.69
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.69
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.68
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.68
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.68
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.67
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.67
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.66
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.66
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.65
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.64
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.63
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.63
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.63
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.62
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.61
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.6
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.59
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.58
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.58
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.56
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.54
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.5
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.5
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.48
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	99.45
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.44
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.44
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.42
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.4
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	99.4
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.37
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.35
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.31
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.3
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	99.26
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.26
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.23
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.23
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.23
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	99.17
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	99.17
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.16
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	99.16
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	99.15
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.14
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	99.1
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.04
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	99.03
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	99.02
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	99.0
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.98
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.98
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.96
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.96
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	98.96
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.95
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.94
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	98.87
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.85
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.82
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.59
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.55
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.49
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.48
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.47
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.47
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.47
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.42
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	98.32
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	98.3
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	98.26
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	98.24
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.2
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.19
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.17
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.16
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	98.14
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	98.1
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.07
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.07
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.04
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.04
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.02
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.0
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.99
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.99
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.97
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.97
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.97
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.97
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.96
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.95
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.94
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.93
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.92
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.9
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.89
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.89
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.88
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.88
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.88
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.87
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.87
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.86
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.85
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.85
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.84
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	97.84
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.83
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.83
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.81
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.81
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.8
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.79
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.78
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.78
3bos_A	242	Putative DNA replication factor; P-loop containing	97.78
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.77
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.77
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.76
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.75
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.75
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.74
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.73
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.73
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.72
2og2_A	359	Putative signal recognition particle receptor; nuc	97.72
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.72
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.72
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.71
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.69
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.67
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.67
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.67
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.67
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.66
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.66
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.64
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.64
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.64
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.63
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.63
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.63
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.62
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.62
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.6
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.6
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.6
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.6
3pvs_A	447	Replication-associated recombination protein A; ma	97.59
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.59
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.59
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.59
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.58
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.58
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.58
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.58
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.58
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.58
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.57
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.57
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.57
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.57
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.57
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.56
1g6h_A	257	High-affinity branched-chain amino acid transport	97.56
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.56
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.56
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.55
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.55
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.55
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.55
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.55
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.55
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.55
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.55
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.54
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.54
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.54
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.54
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.53
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.53
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.53
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.52
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.52
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.51
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.5
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.5
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	97.5
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.5
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.48
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.48
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.48
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.47
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.47
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.46
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.46
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.46
2qgz_A	308	Helicase loader, putative primosome component; str	97.46
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.45
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.45
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.45
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.45
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.45
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.44
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.44
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.43
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.42
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.42
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.42
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.42
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.42
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.41
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.4
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.4
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.4
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.4
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.4
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.4
3co5_A	143	Putative two-component system transcriptional RES	97.39
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.39
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.39
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.39
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.39
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.39
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.38
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.38
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.38
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.38
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.37
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.37
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.37
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.36
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.36
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.36
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.35
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.35
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.35
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.35
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.35
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.34
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.34
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.34
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.34
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.34
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	97.34
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.33
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.33
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.32
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.32
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.32
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.31
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.31
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	97.3
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.3
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.3
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.3
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.3
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.3
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.3
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.3
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.29
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.29
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.29
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.28
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.28
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.27
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.27
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.26
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.26
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.25
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.25
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.25
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.24
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.24
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.24
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.24
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.24
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.24
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.24
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.23
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.23
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.22
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.22
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.22
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.21
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.21
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.21
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.2
2xxa_A	433	Signal recognition particle protein; protein trans	97.2
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.19
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.19
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.19
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.18
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.18
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	97.18
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.17
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.17
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.17
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.16
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.16
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.16
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.16
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	97.15
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.15
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.15
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.15
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.14
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.14
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	97.13
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.13
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.11
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.11
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.11
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.11
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.09
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.09
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.08
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.08
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.08
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.08
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.08
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.07
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.07
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.07
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.07
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.07
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	97.06
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.06
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.06
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.05
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.05
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.04
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.04
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.04
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.04
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.04
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.04
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.03
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.03
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.03
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.02
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.02
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	97.02
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.02
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.01
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.01
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.0
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.0
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.0
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.99
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.99
2fna_A	357	Conserved hypothetical protein; structural genomic	96.98
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.98
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.97
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.97
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.96
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.95
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.95
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.95
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.94
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.94
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.94
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.93
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.93
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.93
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.92
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.92
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.91
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	96.91
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.91
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.91
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.91
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.91
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.91
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.9
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.9
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.89
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.89
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.88
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.88
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.88
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.88
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.88
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.87
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.87
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.87
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	96.86
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.86
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.86
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.85
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.84
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.84
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.84
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.84
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.84
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.83
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.83
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.83
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.82
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.82
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.82
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.81
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.8
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.8
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.79
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.77
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.76
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.75
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.75
3io5_A	333	Recombination and repair protein; storage dimer, i	96.75
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.74
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.73
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.73
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.72
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.72
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.72
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.72
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.71
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.7
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.7
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.7
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.69
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.69
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.68
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.68
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.66
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.65
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.65
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.65
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.63
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.63
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.62
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.62

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=100.00  E-value=4.8e-37  Score=224.42  Aligned_cols=189  Identities=46%  Similarity=0.737  Sum_probs=170.9

Q ss_pred             cccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028025           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (215)
Q Consensus        14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (215)
                      ..-...++++|+|.|||||||+|+|+.|++++|+.+++++|++|+.+..+++.+..+..++..|..+|++.+..++.+++
T Consensus        22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l  101 (217)
T 3umf_A           22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAM  101 (217)
T ss_dssp             --CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             cchhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            33345678999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HccC--CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchh
Q 028025           94 EESG--NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLP  169 (215)
Q Consensus        94 ~~~~--~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~  169 (215)
                      .+..  ..++|+||||++..+...|.. ....++.+|+|++|.+++.+|+..|  ..+|.++..+.+.+|+..|++...+
T Consensus       102 ~~~~~~~~g~ilDGfPRt~~Qa~~l~~-~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~p  180 (217)
T 3umf_A          102 IKLVDKNCHFLIDGYPRELDQGIKFEK-EVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKP  180 (217)
T ss_dssp             HHHTTTCSEEEEETBCSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHH
T ss_pred             hhccccccCcccccCCCcHHHHHHHHH-hCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            7643  678999999999999999998 7888999999999999999999998  4567888899999999999999999


Q ss_pred             HHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          170 VVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       170 ~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      +.++|.+.+.++.||++.+++++++.|.+.|+..
T Consensus       181 l~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k~  214 (217)
T 3umf_A          181 VIEHYKQQNKVITIDASGTVDAIFDKVNHELQKF  214 (217)
T ss_dssp             HHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            9999999989999999999999999999988653

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=100.00  E-value=1.1e-34  Score=211.05  Aligned_cols=179  Identities=34%  Similarity=0.700  Sum_probs=164.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      |+|+|.|||||||+|+|+.|++++|+.+++++|++|+.+..+++.+.....++..|..+|++++..++..++..  ..++
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~--~~~~   78 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK--HGNV   78 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS--SSCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc--CCce
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999865  4679


Q ss_pred             EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc----cC------------------CCCCCcHHHH
Q 028025          102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR----NQ------------------GREDDNVETI  156 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r----~~------------------~~~~~~~~~~  156 (215)
                      |+||||++..+...|...   ....++.+|+|++|.+++.+|+..|    ..                  .+.++..+.+
T Consensus        79 ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i  158 (206)
T 3sr0_A           79 IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVI  158 (206)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHH
T ss_pred             EecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHH
Confidence            999999999999888653   5678999999999999999999988    11                  3567889999


Q ss_pred             HHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          157 RKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      .+|+..|++...++.++|.+.+.+..||++.++++++++|.+.|.+
T Consensus       159 ~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e  204 (206)
T 3sr0_A          159 KKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD  204 (206)
T ss_dssp             HHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            9999999999999999999999899999999999999999999865

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=100.00  E-value=1.2e-32  Score=201.56  Aligned_cols=182  Identities=33%  Similarity=0.591  Sum_probs=150.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-C
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-N   98 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   98 (215)
                      ..+...|.|+|||||||+|+.|++++++.+++.|+++++.+..+++.+..+.+++..|..+|++.+..++.+++.+.. .
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~   86 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCA   86 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred             cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccC
Confidence            357899999999999999999999999999999999999999999999999999999999999999999999987654 5


Q ss_pred             CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc----cC-------------------------CCC
Q 028025           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----NQ-------------------------GRE  149 (215)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r----~~-------------------------~~~  149 (215)
                      .++|+||||++..+...|.. ....++.+|+|++|++++.+|+.+|    ..                         +|.
T Consensus        87 ~g~ILDGfPRt~~Qa~~L~~-~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~  165 (230)
T 3gmt_A           87 NGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRD  165 (230)
T ss_dssp             TCEEEESCCCSHHHHHHHHH-TTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCG
T ss_pred             CCeEecCCCCcHHHHHHHHH-hCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCC
Confidence            68999999999999999988 7888999999999999999999998    22                         277


Q ss_pred             CCcHHHHHHHHHHHhhcchhHHHHHHhc-----------CcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          150 DDNVETIRKRFKVFLESSLPVVQYYEAK-----------GKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      ++..+.+.+|+..|++...++.++|...           +.+..||++.+++++++.|.+.+.+
T Consensus       166 DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~  229 (230)
T 3gmt_A          166 DDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS  229 (230)
T ss_dssp             GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence            8899999999999999999999999973           6789999999999999999887753

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.97  E-value=6.1e-30  Score=191.47  Aligned_cols=184  Identities=32%  Similarity=0.597  Sum_probs=163.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (215)
                      +.+|++|+|+|+|||||||+|+.|++++|+.+++.|++++..+..+...+..+..++..+...++..+..++...+....
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~  105 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ  105 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc
Confidence            45789999999999999999999999999999999999999888888999999999999999999999888888886543


Q ss_pred             -CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccC---------------------------
Q 028025           98 -NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQ---------------------------  146 (215)
Q Consensus        98 -~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~---------------------------  146 (215)
                       +.++++||||....+...+...   ....|+.+|+|++|++++.+|+.+|..                           
T Consensus       106 ~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~  185 (243)
T 3tlx_A          106 CKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEP  185 (243)
T ss_dssp             GSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCB
T ss_pred             ccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCcccccccc
Confidence             7889999999998888776652   456789999999999999999998821                           


Q ss_pred             --CCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          147 --GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       147 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                        ++.++..+.+.+|+..|.....++.++|...+.++.+|++.+++++++.|.+.|.
T Consensus       186 l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  242 (243)
T 3tlx_A          186 LIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID  242 (243)
T ss_dssp             CBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence              2556788999999999999999999999988889999999999999999998774

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.97  E-value=1.5e-28  Score=180.96  Aligned_cols=181  Identities=30%  Similarity=0.612  Sum_probs=159.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  100 (215)
                      |.|+|+|+|||||||+|+.|++.+|+.+++.|++++..+..+.+.+..+...+..+...++.....++...+.... +.+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~   80 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG   80 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence            4699999999999999999999999999999999999999998899999999999999999988888888876543 789


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------CCC
Q 028025          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGR  148 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~-----------------------------~~~  148 (215)
                      +++||+|....+...+...   ....|+.+|+|++|++++.+|+.+|.                             .++
T Consensus        81 ~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r  160 (216)
T 3dl0_A           81 FLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQR  160 (216)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCC
Confidence            9999999998877766653   34578999999999999999999871                             134


Q ss_pred             CCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      .++..+.+.+|+..|.....++.++|...+.++.+|++.++++++++|.+.+..
T Consensus       161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3dl0_A          161 ADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG  214 (216)
T ss_dssp             TTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            677889999999999999999999999888899999999999999999998864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.97  E-value=2.5e-28  Score=179.83  Aligned_cols=181  Identities=31%  Similarity=0.637  Sum_probs=159.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  100 (215)
                      |.|+|+|+|||||||+|+.|++.+|+.+++.|++++..+..+...+..+...+..+...++.....++...+.... +.+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~   80 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG   80 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence            4699999999999999999999999999999999999999888899999999999999999988888888876543 788


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------CCC
Q 028025          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGR  148 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~-----------------------------~~~  148 (215)
                      +|+||+|....+...+...   ....++.+|+|++|++++.+|+.+|.                             .++
T Consensus        81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r  160 (216)
T 3fb4_A           81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQR  160 (216)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccC
Confidence            9999999998877766653   34568999999999999999999870                             123


Q ss_pred             CCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      .++..+.+.+|+..|.....++.++|...+.++++|++.++++++++|.+.+..
T Consensus       161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3fb4_A          161 IDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG  214 (216)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence            567788999999999999999999999888899999999999999999998864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.97  E-value=3.3e-28  Score=176.48  Aligned_cols=184  Identities=43%  Similarity=0.829  Sum_probs=152.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc-
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-   96 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   96 (215)
                      +.++++|+|+|+|||||||+++.|++.+++.+++.|++++.....+...+..+.+.+..+...+.+.....+...+... 
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~   85 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV   85 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc
Confidence            3467899999999999999999999999999999999999887777778888888888888888877777776665432 


Q ss_pred             -CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHHHH
Q 028025           97 -GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQY  173 (215)
Q Consensus        97 -~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (215)
                       .+.++|+||++....+...+.. ....++.+|||++|++++.+|+.+|  ..++..+..+.+.+|+..+.....++...
T Consensus        86 ~~~~~vi~d~~~~~~~~~~~~~~-~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  164 (196)
T 2c95_A           86 NTSKGFLIDGYPREVQQGEEFER-RIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAF  164 (196)
T ss_dssp             TTCSCEEEESCCCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHH
T ss_pred             ccCCcEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence             3789999999988887777766 5577899999999999999999888  23444456778889999888887777777


Q ss_pred             HHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          174 YEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       174 ~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      |...+.++++|++.++++++++|...+..
T Consensus       165 ~~~~~~~~~Id~~~~~e~v~~~i~~~l~~  193 (196)
T 2c95_A          165 YEKRGIVRKVNAEGSVDSVFSQVCTHLDA  193 (196)
T ss_dssp             HHHHTCEEEEECCSCHHHHHHHHHHHHHH
T ss_pred             HHhcCcEEEEECCCCHHHHHHHHHHHHHH
Confidence            77666677889989999999999988753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=4.4e-28  Score=178.63  Aligned_cols=181  Identities=33%  Similarity=0.641  Sum_probs=151.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-C
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-N   98 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   98 (215)
                      ++++|+|+|+|||||||+++.|++.+++.+++.|++++.....+++.+..+.+.+..+...+.+....++...+.... +
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~   83 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCV   83 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccC
Confidence            457899999999999999999999999999999999999888888888888888888888898888888887776533 7


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccC-----------------------------
Q 028025           99 DKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQ-----------------------------  146 (215)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~-----------------------------  146 (215)
                      .++|+||||.+..+...+..+   ....|+++|||++|++++.+|+..|..                             
T Consensus        84 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~  163 (217)
T 3be4_A           84 NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLV  163 (217)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCB
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccccc
Confidence            789999999987766665531   456889999999999999999998710                             


Q ss_pred             CCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhh
Q 028025          147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l  200 (215)
                      .+.++..+.+.+++..|.....++.++|...+.++.+|++.+++++++.|.+.+
T Consensus       164 ~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  217 (217)
T 3be4_A          164 WRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL  217 (217)
T ss_dssp             CCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence            122345778889999999988999888987777899999999999999998754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.97  E-value=9.2e-28  Score=174.91  Aligned_cols=196  Identities=30%  Similarity=0.576  Sum_probs=148.9

Q ss_pred             CCccccccccccccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCC
Q 028025            1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV   80 (215)
Q Consensus         1 ~~~~~~~p~~~~~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (215)
                      ||.--+.|-+..... .+.++++|+|+|+|||||||+|+.|++.+++.+++.|++++..+..+...+..+.+.+..+...
T Consensus         1 ~~~~~~~~~~~~~~~-~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~   79 (201)
T 2cdn_A            1 MGSSHHHHHHSSGLV-PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLV   79 (201)
T ss_dssp             ----------------CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCCcccccccccccc-CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcc
Confidence            555555565544333 4667889999999999999999999999999999999999987777777788888888888888


Q ss_pred             CHHHHHHHHHHHHHcc-CCCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHH
Q 028025           81 PSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETI  156 (215)
Q Consensus        81 ~~~~~~~~~~~~~~~~-~~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~  156 (215)
                      +......++...+... .+.++|+||++.+..+...+..+   ....|+.+|||++|++++.+|+.+|  +++.+..+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R--~r~~~~~e~~  157 (201)
T 2cdn_A           80 PSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR--GRADDTDDVI  157 (201)
T ss_dssp             CHHHHHHHHHHHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH--CCTTCSHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC--CCCCCCHHHH
Confidence            8887777777665432 26679999999887766555442   3456899999999999999999988  6666677888


Q ss_pred             HHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          157 RKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      .+++..|.....++...|  ...++++|++.++++++++|...+.
T Consensus       158 ~~r~~~~~~~~~~~~~~~--~~~~~~Id~~~~~eev~~~I~~~l~  200 (201)
T 2cdn_A          158 LNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRALG  200 (201)
T ss_dssp             HHHHHHHHHHTTTHHHHT--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhHHHHHHh--cCcEEEEeCCCCHHHHHHHHHHHHc
Confidence            889888887777766666  3457889999999999999998874

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.97  E-value=1.2e-27  Score=176.71  Aligned_cols=183  Identities=26%  Similarity=0.553  Sum_probs=154.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cc-C
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-ES-G   97 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~   97 (215)
                      ++++|+|+|+|||||||+++.|++.+++.+++.|++++.....+++.+..+...+..+...+.+....++...+. .. .
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~   82 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPAC   82 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcccc
Confidence            567899999999999999999999999999999999999888888888888888988888899888888887775 22 2


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccC----------------------------
Q 028025           98 NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQ----------------------------  146 (215)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~----------------------------  146 (215)
                      +.++|+|||+.+..+...+..+   ....||++|||++|++++.+|+..|..                            
T Consensus        83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l  162 (220)
T 1aky_A           83 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEAL  162 (220)
T ss_dssp             GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred             CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccccc
Confidence            5689999999887766555432   457899999999999999999987710                            


Q ss_pred             -CCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          147 -GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                       .+.++..+.+.+|+..|.....++.++|...+.++.+|++.+++++++.|...+..
T Consensus       163 ~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  219 (220)
T 1aky_A          163 VQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGK  219 (220)
T ss_dssp             BCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHTC
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence             13445677889999999998888888888777789999999999999999988854

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.96  E-value=3.2e-27  Score=170.88  Aligned_cols=184  Identities=55%  Similarity=0.939  Sum_probs=153.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (215)
                      .++++|+|+|+|||||||+++.|++.+++.+++.|++++.....+...+..+.+.+..+...+.......+...+....+
T Consensus         4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~~~   83 (194)
T 1qf9_A            4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQG   83 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTT
T ss_pred             CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCC
Confidence            35679999999999999999999999999999999999988777888888888888888888888777788777765557


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHHHHH
Q 028025           99 DKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYY  174 (215)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (215)
                      .++|+||++........|...  ....++++|||++|++++.+|+.+|  ..++..+..+.+.+|+..+.....++...|
T Consensus        84 ~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~  163 (194)
T 1qf9_A           84 KNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHY  163 (194)
T ss_dssp             CCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             CCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHH
Confidence            899999999888777666542  2236889999999999999999988  235666678889999998888777777777


Q ss_pred             HhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          175 EAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       175 ~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      ...+.++++|++.++++++++|.+.+..
T Consensus       164 ~~~~~~~~id~~~~~~~~~~~i~~~l~~  191 (194)
T 1qf9_A          164 NKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            7666678899989999999999988753

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.96  E-value=1.5e-27  Score=175.44  Aligned_cols=178  Identities=37%  Similarity=0.675  Sum_probs=152.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  100 (215)
                      +.|+|+|+|||||||+++.|++.+|+.+++.|+++++.+..+...+..+...+..+...+.+.+..++...+.... +.+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~   80 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence            4699999999999999999999999999999999999888888888778888888888888888888888776532 467


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------CCCCCC
Q 028025          101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDD  151 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~-----------------------------~~~~~~  151 (215)
                      +|+||+|....+...+.. ....|+++|+|+++++++.+|+.+|.                             ..+.++
T Consensus        81 ~i~dg~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd  159 (214)
T 1e4v_A           81 FLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDD  159 (214)
T ss_dssp             EEEESCCCSHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTC
T ss_pred             EEEeCCCCCHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCC
Confidence            999999988887777776 66789999999999999999998771                             125566


Q ss_pred             cHHHHHHHHHHHhhcchhHHHHHHhc-----CcEEEEcCCCCHHHHHHHHHHhh
Q 028025          152 NVETIRKRFKVFLESSLPVVQYYEAK-----GKVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~id~~~~~~e~~~~i~~~l  200 (215)
                      ..+.+.+|+..|.....++.++|...     ..++.+|++.+++++++.|.+.+
T Consensus       160 ~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l  213 (214)
T 1e4v_A          160 QEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  213 (214)
T ss_dssp             SHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            78889999999999999998888764     56889999999999999998876

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.96  E-value=4.5e-27  Score=175.04  Aligned_cols=184  Identities=34%  Similarity=0.614  Sum_probs=154.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (215)
                      +.+++.|+|+|+|||||||+++.|++++++.+++.|+++++.+..+...+..+...+..+...+++....++...+....
T Consensus        13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~   92 (233)
T 1ak2_A           13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP   92 (233)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence            44668999999999999999999999999999999999999888888888888888888888899988888888776532


Q ss_pred             -CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccC------------------------C--
Q 028025           98 -NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQ------------------------G--  147 (215)
Q Consensus        98 -~~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~------------------------~--  147 (215)
                       +.++|+|||+.+..+...+..+   ....++++|||+++++++.+|+..|..                        +  
T Consensus        93 ~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~  172 (233)
T 1ak2_A           93 CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEP  172 (233)
T ss_dssp             GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCB
T ss_pred             ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccccc
Confidence             5679999999888776655432   346789999999999999999987710                        1  


Q ss_pred             ---CCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          148 ---REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       148 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                         +.++..+.+.+|+..|.....++.++|...+.++.||++.+++++++.|.+.+.
T Consensus       173 l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~  229 (233)
T 1ak2_A          173 LIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS  229 (233)
T ss_dssp             CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence               345567888999999988888888888876678999999999999999998875

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.96  E-value=1.5e-26  Score=168.70  Aligned_cols=185  Identities=48%  Similarity=0.927  Sum_probs=150.8

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHH-cCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (215)
                      +.+.++++|+|+|+|||||||+++.|++.+|+.+++.|++++.... .+...++.+...+..+...+......++...+.
T Consensus        10 ~~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~   89 (203)
T 1ukz_A           10 FSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS   89 (203)
T ss_dssp             SCTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence            3466788999999999999999999999999999999999988654 467777888888888888777766666655443


Q ss_pred             c---cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchh
Q 028025           95 E---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLP  169 (215)
Q Consensus        95 ~---~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~  169 (215)
                      .   .++..+++||++.+......+.. ....++++|||++|++++.+|+.+|  ..++..+..+.+.+|+..|.....+
T Consensus        90 ~~l~~g~~~~i~dg~~~~~~~~~~~~~-~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~  168 (203)
T 1ukz_A           90 DNVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMP  168 (203)
T ss_dssp             HHHHTTCCEEEEETCCCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHH
T ss_pred             hhhccCCCeEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHH
Confidence            2   22368999999988887777766 5556899999999999999999887  2345566788889999998888888


Q ss_pred             HHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          170 VVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       170 ~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      +.+.|...+.++.+|++.++++++++|.+.+.
T Consensus       169 ~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~  200 (203)
T 1ukz_A          169 VIEYFETKSKVVRVRCDRSVEDVYKDVQDAIR  200 (203)
T ss_dssp             HHHHHHTTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcEEEEECCCCHHHHHHHHHHHHh
Confidence            87777766777789999999999999998874

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.96  E-value=4.1e-27  Score=171.07  Aligned_cols=181  Identities=40%  Similarity=0.769  Sum_probs=147.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc--C
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G   97 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   97 (215)
                      ++++|+|+|+|||||||+++.|++++++.+++.|++++.....+.+.+..+.+.+..+...+.......+...+...  .
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~   90 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD   90 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence            46799999999999999999999999999999999999887667777777888888888888887777776665443  3


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccC--CCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYE  175 (215)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (215)
                      +.++|+||++....+...|.. ....|+++|||++|++++.+|+.+|..  ++.++..+.+.+|+..+.....++..+|.
T Consensus        91 ~~~vi~dg~~~~~~~~~~l~~-~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  169 (199)
T 2bwj_A           91 TRGFLIDGYPREVKQGEEFGR-RIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYE  169 (199)
T ss_dssp             CSCEEEETCCSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999988877777766 445788999999999999999998821  22223456788888888877777767777


Q ss_pred             hcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          176 AKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       176 ~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      ..+.++++|++.++++++++|...+.
T Consensus       170 ~~~~~~~id~~~~~e~v~~~i~~~l~  195 (199)
T 2bwj_A          170 TKTQLHKINAEGTPEDVFLQLCTAID  195 (199)
T ss_dssp             HHSEEEEEETTSCHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCCHHHHHHHHHHHHH
Confidence            66666889998999999999988875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.96  E-value=5.6e-27  Score=173.33  Aligned_cols=179  Identities=27%  Similarity=0.523  Sum_probs=149.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      ++|+|+|+|||||||+++.|++.+++.+++.|+++++.+..+...+..+.+.+..+...+.+....++...+....+.++
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~v   80 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGW   80 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeE
Confidence            47999999999999999999999999999999999998777777888888888888888888888888877765336789


Q ss_pred             EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-----CC--------------------------
Q 028025          102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----QG--------------------------  147 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~-----~~--------------------------  147 (215)
                      |+||++.+..+...+...   ....|+++|||++|++++.+|+.+|.     .|                          
T Consensus        81 IlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~  160 (223)
T 2xb4_A           81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSA  160 (223)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEEC
T ss_pred             EEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccccccccc
Confidence            999999887777666541   35689999999999999999999881     11                          


Q ss_pred             CCCCcHH-HHHHHHHHHhhcchhHHH---HHHh-----cCcEEEEcCCCCHHHHHHHHHHhh
Q 028025          148 REDDNVE-TIRKRFKVFLESSLPVVQ---YYEA-----KGKVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       148 ~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~id~~~~~~e~~~~i~~~l  200 (215)
                      +.++..+ .+.+|+..|+....++.+   +|..     .+.++.||++.+++++++.|.+.+
T Consensus       161 r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l  222 (223)
T 2xb4_A          161 RADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL  222 (223)
T ss_dssp             CGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            1123356 889999999999988888   8876     567899999999999999998876

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.96  E-value=2.2e-26  Score=166.69  Aligned_cols=182  Identities=56%  Similarity=0.968  Sum_probs=146.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc-CCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH----
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME----   94 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   94 (215)
                      +|++|+|+|+|||||||+|+.|++.+|+.+++.|++++..... +...+..+...+..+...+.+....++...+.    
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   81 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA   81 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence            4689999999999999999999999999999999999887654 45567777777777887777665555443332    


Q ss_pred             cc-CCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchh
Q 028025           95 ES-GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLP  169 (215)
Q Consensus        95 ~~-~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~  169 (215)
                      .. .+..+|+||++........|...  ....++.+|||++|++++.+|+.+|  ..+++.+..+.+.+++..|.....+
T Consensus        82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~  161 (196)
T 1tev_A           82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKP  161 (196)
T ss_dssp             HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHH
Confidence            21 37799999999888766655542  2235788999999999999999988  3466777788888999999998888


Q ss_pred             HHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          170 VVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       170 ~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      +..+|...+.+++||++.++++++++|.+.+.
T Consensus       162 ~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  193 (196)
T 1tev_A          162 IIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD  193 (196)
T ss_dssp             HHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence            88888877777799999999999999998875

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.95  E-value=2.7e-26  Score=170.20  Aligned_cols=185  Identities=31%  Similarity=0.584  Sum_probs=152.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (215)
                      .++++|+|+|+|||||||+++.|++.+++.+++.|++++.....+...+..+.+++..+...+.+....++...+....+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~   84 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQ   84 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccC
Confidence            45689999999999999999999999999999999999998777887788888888888888888777777666654335


Q ss_pred             CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc----CC-------------------------CC
Q 028025           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN----QG-------------------------RE  149 (215)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~----~~-------------------------~~  149 (215)
                      ..+|+||++....+...+..  ...++.+|||++|++++.+|+..|.    .+                         +.
T Consensus        85 ~~~vid~~~~~~~~~~~l~~--~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~  162 (227)
T 1zd8_A           85 YSWLLDGFPRTLPQAEALDR--AYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQRE  162 (227)
T ss_dssp             SCEEEESCCCSHHHHHHHHT--TSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCG
T ss_pred             CCEEEeCCCCCHHHHHHHHH--hcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCC
Confidence            78999999988776655554  3568899999999999999998761    12                         23


Q ss_pred             CCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK  206 (215)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~  206 (215)
                      ++..+.+.+|+..|.....++..+|...+.++.+|++ +++++++.|.+.+......
T Consensus       163 ~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~~~  218 (227)
T 1zd8_A          163 DDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKVPQ  218 (227)
T ss_dssp             GGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTSCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhcCC
Confidence            4567889999999999888888888877778999998 9999999999999866543

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.95  E-value=2.8e-26  Score=165.04  Aligned_cols=179  Identities=34%  Similarity=0.696  Sum_probs=144.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (215)
                      .++++|+|+|+|||||||+++.|++.+|+.+++.|++++..+..+.+.+..+.+.+..+...+.......+...+.    
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~----   77 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA----   77 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC----
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc----
Confidence            4567999999999999999999999999999999999998777777777888888888888888777777766653    


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHhhcchhHHHH
Q 028025           99 DKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN--QGREDDNVETIRKRFKVFLESSLPVVQY  173 (215)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (215)
                      .++|+||++....+...+..+   ....|+.+|||++|++++.+|+.+|.  .++..+..+.+.+|+..|.....++.+.
T Consensus        78 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~  157 (186)
T 3cm0_A           78 ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGY  157 (186)
T ss_dssp             SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            349999999887665544331   33457899999999999999998882  2466667888888998888776777777


Q ss_pred             HHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          174 YEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       174 ~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      |...+.++++|++.++++++++|.+.+.
T Consensus       158 ~~~~~~~~~id~~~~~~~v~~~i~~~l~  185 (186)
T 3cm0_A          158 YEARGVLKRVDGLGTPDEVYARIRAALG  185 (186)
T ss_dssp             HHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred             HHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence            7765557889998999999999988763

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.95  E-value=9.9e-26  Score=166.59  Aligned_cols=183  Identities=31%  Similarity=0.629  Sum_probs=146.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-   97 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   97 (215)
                      +++++|+|+|+|||||||+++.|++.+++.+++.|++++.....+...+..+.+.+..+...+.+.+..++...+.... 
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~   82 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA   82 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence            3567899999999999999999999999999999999998777788888888888888888888877777766654321 


Q ss_pred             -CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccC----C---------------------CCCC
Q 028025           98 -NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ----G---------------------REDD  151 (215)
Q Consensus        98 -~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~----~---------------------~~~~  151 (215)
                       +.++|+||++....+...+.. ....|+++|||+++++++.+|+..|..    +                     +..+
T Consensus        83 ~~~~~vidg~~~~~~~~~~l~~-~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d  161 (222)
T 1zak_A           83 QENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDD  161 (222)
T ss_dssp             HHTCEEEESCCCSHHHHHHHHT-TTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTC
T ss_pred             cCCcEEEECCCCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCC
Confidence             456778999988877777776 667789999999999999999987610    1                     1234


Q ss_pred             cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (215)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~  204 (215)
                      ..+.+.+|+..|+....++...|..  .++.+|++.+++++++.|.+.+....
T Consensus       162 ~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~l  212 (222)
T 1zak_A          162 TEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSIL  212 (222)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhhc
Confidence            4667888888888776676555543  47889999999999999998886543

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.89  E-value=1.3e-20  Score=141.15  Aligned_cols=184  Identities=30%  Similarity=0.598  Sum_probs=142.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (215)
                      ++.+|+|.|++||||||+++.|++.+|+..++.|++++.....+...+..+...+..+...+.....+.+...+....+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~  105 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ  105 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence            57899999999999999999999999999999999988765544445555556667777778777777776665543456


Q ss_pred             eEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-c---CC-------------------------CCC
Q 028025          100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N---QG-------------------------RED  150 (215)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~---~~-------------------------~~~  150 (215)
                      ++++||++....+...+..  ...++++++|+++++++.+|+..| .   .+                         ...
T Consensus       106 ~~il~g~~~~~~~~~~l~~--~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~  183 (246)
T 2bbw_A          106 HWLLDGFPRTLGQAEALDK--ICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQED  183 (246)
T ss_dssp             CEEEESCCCSHHHHHHHHT--TCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGG
T ss_pred             eEEEECCCCCHHHHHHHHh--hcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCC
Confidence            7889998877654444442  356789999999999999998766 1   11                         223


Q ss_pred             CcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025          151 DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK  206 (215)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~  206 (215)
                      +..+.+.+++..|.+...++..+|...+.++.+|++.+ +++++.|.+.+......
T Consensus       184 ~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~~~  238 (246)
T 2bbw_A          184 DKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKITP  238 (246)
T ss_dssp             GSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTSCC
T ss_pred             CcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhCCC
Confidence            45678888998888888888888888777899999888 99999999998765544

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.89  E-value=3.6e-21  Score=136.89  Aligned_cols=170  Identities=16%  Similarity=0.221  Sum_probs=115.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCC----CcHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcc
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS----ENGTMIQNMIKE-GKIVPSEVTIKLLQKAMEES   96 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   96 (215)
                      ++|+|+|+|||||||+++.| +.+|+.+++.|++++.......    ............ +.    ......+...+...
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~   76 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGD----GVVARLCVEELGTS   76 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCT----THHHHHHHHHHCSC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCH----HHHHHHHHHHHHhc
Confidence            68999999999999999999 9999999999999998765421    122222222221 21    22344455555334


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028025           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (215)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (215)
                      .+..+|+||+ ........+.. ....++.+|||++|++++.+|+..|.+.......+.+.+++......  +... +..
T Consensus        77 ~~~~vi~dg~-~~~~~~~~l~~-~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~--~~~~-~~~  151 (179)
T 3lw7_A           77 NHDLVVFDGV-RSLAEVEEFKR-LLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKL--GIGE-VIA  151 (179)
T ss_dssp             CCSCEEEECC-CCHHHHHHHHH-HHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHH--THHH-HHH
T ss_pred             CCCeEEEeCC-CCHHHHHHHHH-HhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhcc--ChHh-HHH
Confidence            4889999998 77777777777 55578899999999999999999882222235567777776432211  1122 233


Q ss_pred             cCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          177 KGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       177 ~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      ... +++|++.++++++++|...+..
T Consensus       152 ~ad-~vId~~~~~~~~~~~i~~~l~~  176 (179)
T 3lw7_A          152 MAD-YIITNDSNYEEFKRRCEEVTDR  176 (179)
T ss_dssp             TCS-EEEECCSCHHHHHHHHHHHHHH
T ss_pred             hCC-EEEECCCCHHHHHHHHHHHHHH
Confidence            333 5666767999999999988753

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.83  E-value=7.5e-19  Score=127.76  Aligned_cols=161  Identities=17%  Similarity=0.244  Sum_probs=106.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcc
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---IKLLQKAMEES   96 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~   96 (215)
                      ++++|+|+|+|||||||+++.|++.+|+.+++.|++.....          ......+........   ...+...+  .
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~~--~   84 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGERL--A   84 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHHH--T
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHHH--h
Confidence            46799999999999999999999999999999987642210          011111222222211   22233333  2


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028025           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (215)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (215)
                      .+..+|+|+..........+.. ....++.+|||++|.+++.+|+.+|  +......+.+...+..+.    +.   + .
T Consensus        85 ~~~~vivd~~~~~~~~~~~l~~-~~~~~~~vi~l~~~~e~~~~Rl~~R--~~~~~~~~~~~~~~~~~~----~~---~-~  153 (202)
T 3t61_A           85 SREPVVVSCSALKRSYRDKLRE-SAPGGLAFVFLHGSESVLAERMHHR--TGHFMPSSLLQTQLETLE----DP---R-G  153 (202)
T ss_dssp             SSSCCEEECCCCSHHHHHHHHH-TSTTCCEEEEEECCHHHHHHHHHHH--HSSCCCHHHHHHHHHHCC----CC---T-T
T ss_pred             cCCCEEEECCCCCHHHHHHHHH-hcCCCeEEEEEeCCHHHHHHHHHHh--hccCCCHHHHHHHHHhcC----CC---C-C
Confidence            3778999987766666677776 5556678999999999999999988  222222333333333322    11   1 1


Q ss_pred             cCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          177 KGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       177 ~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      ....++||++.++++++++|...+...
T Consensus       154 ~~~~~~Id~~~~~~e~~~~I~~~l~~~  180 (202)
T 3t61_A          154 EVRTVAVDVAQPLAEIVREALAGLARL  180 (202)
T ss_dssp             STTEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence            224678888899999999999888643

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.82  E-value=5.8e-19  Score=128.23  Aligned_cols=167  Identities=16%  Similarity=0.300  Sum_probs=100.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh--CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH------------H
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT------------I   86 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~   86 (215)
                      ..+|+|+|+.||||||+++.|++.+  |+.++....      +.+.+.++.+.+.+.++........            .
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~   75 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV   75 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999998  444432210      2234445555555554444433211            1


Q ss_pred             HHHHHHHHccCCCeEEEeCCCC------------CHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCC-
Q 028025           87 KLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDD-  151 (215)
Q Consensus        87 ~~~~~~~~~~~~~~~iidg~~~------------~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~-  151 (215)
                      ..+...+.+  +..||.|.|..            ..++...+...  ..+.||++|||++|++++.+|+.+|  ++..+ 
T Consensus        76 ~~i~p~l~~--g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r--~~~~dr  151 (205)
T 4hlc_A           76 LKVIPALKE--GKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN--SRDQNR  151 (205)
T ss_dssp             HTHHHHHHT--TCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---------
T ss_pred             HHHHHHHHc--CCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhc--CCcccc
Confidence            222333332  88999996532            13333333332  5678999999999999999999887  32221 


Q ss_pred             ---cHHHHHHHHHHHhhcchhHHHHHH-hcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          152 ---NVETIRKRFKVFLESSLPVVQYYE-AKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       152 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                         ...++.++....+      ..... .+..+++||++.++++++++|.+.+...
T Consensus       152 ~e~~~~~f~~~v~~~Y------~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~  201 (205)
T 4hlc_A          152 LDQEDLKFHEKVIEGY------QEIIHNESQRFKSVNADQPLENVVEDTYQTIIKY  201 (205)
T ss_dssp             CCHHHHHHHHHHHHHH------HHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHH------HHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence               1223333332211      11122 2346899999999999999988777543

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.82  E-value=1.1e-18  Score=128.99  Aligned_cols=173  Identities=17%  Similarity=0.283  Sum_probs=107.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC--CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHH-HH-----
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK-LL-----   89 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----   89 (215)
                      +.++++|+|+|+|||||||+++.|++.++  +.++...      .+.+.+.+..+.+++..+.........- ..     
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~   96 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE   96 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            45788999999999999999999999996  4444331      1233445556666665554333221111 11     


Q ss_pred             ------HHHHHccCCCeEEEe----------CCCCCH--HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc--CC
Q 028025           90 ------QKAMEESGNDKFLID----------GFPRNE--ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN--QG  147 (215)
Q Consensus        90 ------~~~~~~~~~~~~iid----------g~~~~~--~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~--~~  147 (215)
                            ...+.  .+..||+|          |++...  .....+..+  ....||++|||++|++++.+|+.+|.  .+
T Consensus        97 ~~~~~i~~~l~--~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~d  174 (229)
T 4eaq_A           97 HLVLKVIPALK--EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQN  174 (229)
T ss_dssp             HCCCCCHHHHH--TTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHH--CCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCcc
Confidence                  11121  37899999          776433  332232221  56789999999999999999999881  12


Q ss_pred             CCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          148 REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      +.+.....+.+++...+....   ..+  +..+++||++.++++++++|.+.+...
T Consensus       175 r~e~~~~~~~~rv~~~y~~l~---~~~--~~~~~vIDa~~s~eev~~~I~~~l~~~  225 (229)
T 4eaq_A          175 RLDQEDLKFHEKVIEGYQEII---HNE--SQRFKSVNADQPLENVVEDTYQTIIKY  225 (229)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHT---TTC--TTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHHHHHHHHH---HhC--CCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            332234455555554332211   111  235889999999999999999887644

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=4.3e-19  Score=128.77  Aligned_cols=170  Identities=12%  Similarity=0.142  Sum_probs=103.2

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (215)
                      ++.+.++.+|+|+|+|||||||+++.|++.+++.+++.|++.....  +....+.+...-.   .........++.... 
T Consensus        19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g~~i~~~~~~~~~---~~~~~~e~~~l~~l~-   92 (199)
T 3vaa_A           19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--HKTVGELFTERGE---AGFRELERNMLHEVA-   92 (199)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHHHHHHHHHH---HHHHHHHHHHHHHHT-
T ss_pred             eEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--CCcHHHHHHhcCh---HHHHHHHHHHHHHHh-
Confidence            3445567799999999999999999999999999999998876542  2223222221110   001111122333322 


Q ss_pred             ccCCCeEEEe---CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh-hc-cCCC-CCCcHHHHHHHHHHHhhcch
Q 028025           95 ESGNDKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL-NR-NQGR-EDDNVETIRKRFKVFLESSL  168 (215)
Q Consensus        95 ~~~~~~~iid---g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~-~r-~~~~-~~~~~~~~~~~~~~~~~~~~  168 (215)
                        ....+|++   |.+........+..     ++.+|||++|++++.+|+. .| .++. .....+.+.+++........
T Consensus        93 --~~~~~vi~~ggg~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~  165 (199)
T 3vaa_A           93 --EFENVVISTGGGAPCFYDNMEFMNR-----TGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRA  165 (199)
T ss_dssp             --TCSSEEEECCTTGGGSTTHHHHHHH-----HSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHH
T ss_pred             --hcCCcEEECCCcEEccHHHHHHHHc-----CCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHH
Confidence              24556666   33333334344433     5789999999999999998 44 2221 23345556666665555444


Q ss_pred             hHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhCC
Q 028025          169 PVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTP  202 (215)
Q Consensus       169 ~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~~  202 (215)
                      ++   |.. . .++||++ .++++++++|...+..
T Consensus       166 ~~---y~~-a-d~~Idt~~~s~ee~~~~I~~~l~~  195 (199)
T 3vaa_A          166 PF---YTQ-A-QYIFNADELEDRWQIESSVQRLQE  195 (199)
T ss_dssp             HH---HTT-S-SEEEECCCCSSHHHHHHHHHHHHH
T ss_pred             HH---Hhh-C-CEEEECCCCCHHHHHHHHHHHHHH
Confidence            43   444 3 3566665 4999999999888754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.81  E-value=4.1e-18  Score=122.95  Aligned_cols=163  Identities=19%  Similarity=0.309  Sum_probs=102.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH-----------HH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------IK   87 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~   87 (215)
                      ++|+|+|+|||||||+++.|++++   |+.+++.++      ......+..+...+..+...+....           ..
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~   74 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE   74 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999998   898888642      1122233344444444433322111           12


Q ss_pred             HHHHHHHccCCCeEEEe----------CCCCC--HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028025           88 LLQKAMEESGNDKFLID----------GFPRN--EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (215)
Q Consensus        88 ~~~~~~~~~~~~~~iid----------g~~~~--~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~  153 (215)
                      .+...+.  .+..+++|          |++..  ......+..+  ....|+.+|||++|++++.+|+.+|  ++..  .
T Consensus        75 ~i~~~l~--~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r--~~~~--~  148 (195)
T 2pbr_A           75 KIIPDLK--RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK--NRFE--N  148 (195)
T ss_dssp             THHHHHH--TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT--TCCC--C
T ss_pred             HHHHHHh--CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc--Cccc--h
Confidence            2223332  26788888          43332  2233332211  3447999999999999999999876  4433  3


Q ss_pred             HHHHHHHHH-HhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          154 ETIRKRFKV-FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       154 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      ..+.+++.. |...    ...+   ..++++|++.++++++++|.+.+...
T Consensus       149 ~~~~~~~~~~~~~~----~~~~---~~~~~Id~~~~~~~~~~~i~~~l~~~  192 (195)
T 2pbr_A          149 KEFLEKVRKGFLEL----AKEE---ENVVVIDASGEEEEVFKEILRALSGV  192 (195)
T ss_dssp             HHHHHHHHHHHHHH----HHHS---TTEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHH----HhhC---CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence            345555432 3221    1112   35788999999999999999888654

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.81  E-value=1.8e-19  Score=132.48  Aligned_cols=171  Identities=15%  Similarity=0.250  Sum_probs=103.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh-------CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH-----
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----   85 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   85 (215)
                      +.++++|+|+|++||||||+++.|++.+       |+.++..    ++  +.+++.++.+.+.+..+...+....     
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a   95 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFA   95 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4568899999999999999999999998       4333321    11  2344556666666665543322221     


Q ss_pred             ------HHHHHHHHHccCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc
Q 028025           86 ------IKLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN  145 (215)
Q Consensus        86 ------~~~~~~~~~~~~~~~~iidg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~  145 (215)
                            .+.+...+.  .+..||+|+|..+            .+++..+...  ..+.||++|||++|++++.+|+.+|.
T Consensus        96 ~R~~~~~~~i~p~l~--~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~  173 (227)
T 3v9p_A           96 GRREHLALVIEPALA--RGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR  173 (227)
T ss_dssp             HHHHHHHHTHHHHHH--TTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred             HHHHHHHHHHHHHHH--cCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence                  112223333  2889999965322            3344333321  46899999999999999999999881


Q ss_pred             -CCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          146 -QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       146 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                       ..+.+....++.++....+.   .+...  .+..+++||++.++++++++|.+.+.
T Consensus       174 ~~dr~E~~~~ef~~rv~~~Y~---~la~~--~~~~~~vIDa~~s~eeV~~~I~~~l~  225 (227)
T 3v9p_A          174 MPDKFESESDAFFARTRAEYL---RRAQE--APHRFVIVDSSEPIAQIRKQLEGVLA  225 (227)
T ss_dssp             CC---CCHHHHHHHHHHHHHH---HHHHH--CTTTEEEEETTSCHHHHHHHHHHHHH
T ss_pred             CccchhhhhHHHHHHHHHHHH---HHHHH--hcCCEEEEeCCCCHHHHHHHHHHHHH
Confidence             12222222344444433222   11111  13468999999999999999988775

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.80  E-value=7.9e-19  Score=126.60  Aligned_cols=121  Identities=12%  Similarity=0.164  Sum_probs=75.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (215)
                      +.++++|+|+|+|||||||+++.|++.+++.+++.|++..................+..   .........+...+.  .
T Consensus         2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~--~   76 (193)
T 2rhm_A            2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQ--S   76 (193)
T ss_dssp             CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHH--T
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHh--C
Confidence            35678999999999999999999999999999999776444322100001110000000   000111222233332  2


Q ss_pred             CCeEEEeCCCCCHHHHHHH---HHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           98 NDKFLIDGFPRNEENRAAF---EAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~---~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      +.++|+|+++........+   .. ....++++|||++|++++.+|+.+|
T Consensus        77 g~~vi~d~~~~~~~~~~~~~~l~~-~~~~~~~~v~l~~~~e~~~~R~~~R  125 (193)
T 2rhm_A           77 GQSLIMESNFRVDLDTERMQNLHT-IAPFTPIQIRCVASGDVLVERILSR  125 (193)
T ss_dssp             TCCEEEEECCCHHHHHHHHHHHHH-HSCCEEEEEEEECCHHHHHHHHHHH
T ss_pred             CCeEEEecCCCCHHHHHHHHHHHH-hcCCeEEEEEEeCCHHHHHHHHHHh
Confidence            7789999987322222233   33 4567889999999999999999888

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.80  E-value=2.1e-18  Score=122.10  Aligned_cols=152  Identities=16%  Similarity=0.204  Sum_probs=97.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      ++|+|+|+|||||||+++.|++.+++.+++.|.+.....    ..                ....... ..+.  .+..+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~~----------------~~~~~~~-~~l~--~~~~v   58 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----GN----------------EKLFEHF-NKLA--DEDNV   58 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----CH----------------HHHHHHH-HHHT--TCCSE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----HH----------------HHHHHHH-HHHH--hCCCe
Confidence            479999999999999999999999999999876654321    00                0001111 1121  25666


Q ss_pred             EEeCCC---------------CCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhc
Q 028025          102 LIDGFP---------------RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES  166 (215)
Q Consensus       102 iidg~~---------------~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~  166 (215)
                      +.|.+.               ........+.. ....|+.+|||++|++++.+|+.+|  +++....+.+.+....|.. 
T Consensus        59 i~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~l~~~~e~~~~R~~~r--~r~~~~~~~~~~~~~~~~~-  134 (173)
T 3kb2_A           59 IIDRFVYSNLVYAKKFKDYSILTERQLRFIED-KIKAKAKVVYLHADPSVIKKRLRVR--GDEYIEGKDIDSILELYRE-  134 (173)
T ss_dssp             EEESCHHHHHHHTTTBTTCCCCCHHHHHHHHH-HHTTTEEEEEEECCHHHHHHHHHHH--SCSCCCHHHHHHHHHHHHH-
T ss_pred             EEeeeecchHHHHHHHHHhhHhhHHHHHHHhc-cCCCCCEEEEEeCCHHHHHHHHHhc--CCcchhhhHHHHHHHHHHH-
Confidence            777421               12223333343 4467899999999999999999988  5544444333222222222 


Q ss_pred             chhHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhCCCcc
Q 028025          167 SLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       167 ~~~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~~~~~  205 (215)
                         ....|.  ...+++|++ .++++++++|...++...+
T Consensus       135 ---~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~~~~~  169 (173)
T 3kb2_A          135 ---VMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVELEHH  169 (173)
T ss_dssp             ---HHHTCS--SCEEEEETTTSCHHHHHHHHHHHHHHGGG
T ss_pred             ---HHhhcC--CCEEEEECCCCCHHHHHHHHHHHHhCCCc
Confidence               112122  357888887 5999999999998875443

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.80  E-value=2.8e-18  Score=125.32  Aligned_cols=173  Identities=18%  Similarity=0.212  Sum_probs=108.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC--CCCH-HHH--------
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPS-EVT--------   85 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~--------   85 (215)
                      ++++|+|+|++||||||+++.|++.++   +.++....      +.+++.++.+.+++..+.  .+.. ...        
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~------p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~   78 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTRE------PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARA   78 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEES------SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccC------CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999999984   44443211      234455556666665543  1222 111        


Q ss_pred             ---HHHHHHHHHccCCCeEEEeCCCC------------CHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc-CC
Q 028025           86 ---IKLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN-QG  147 (215)
Q Consensus        86 ---~~~~~~~~~~~~~~~~iidg~~~------------~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~-~~  147 (215)
                         .+.+..++.  .+..||.|.|..            ..+++..+...  ..+.||++|||++|++++.+|+.+|. ..
T Consensus        79 ~~~~~~i~p~l~--~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~d  156 (213)
T 4edh_A           79 QHLAGVIRPALA--RGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLD  156 (213)
T ss_dssp             HHHHHTHHHHHH--TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCC
T ss_pred             HHHHHHHHHHHH--CCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcC
Confidence               122223333  288999996432            23444443331  46899999999999999999999882 12


Q ss_pred             CCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025          148 REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                      +.+.....+.++....+.   .+...+  +..+++||++.++++++++|.+.+.....
T Consensus       157 r~E~~~~~~~~rv~~~y~---~l~~~~--~~~~~vIDa~~s~eeV~~~I~~~l~~~l~  209 (213)
T 4edh_A          157 RFEQEDRRFFEAVRQTYL---QRAAQA--PERYQVLDAGLPLAEVQAGLDRLLPNLLE  209 (213)
T ss_dssp             TTTTSCHHHHHHHHHHHH---HHHHHC--TTTEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHH---HHHHHC--CCcEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            332222344444433222   111112  34689999999999999999988875543

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.79  E-value=4.4e-18  Score=124.13  Aligned_cols=172  Identities=16%  Similarity=0.268  Sum_probs=106.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC---C-eEeeHHHHHHHHHHcCCCcHHHHHHHHHcC-----CCCCHH-HH----
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG---Y-THLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE-VT----   85 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~---~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~----   85 (215)
                      ++++|+|+|++||||||+++.|++.+.   + .++..    ++  +.+++.++.+.+.+...     ..+... ..    
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~   75 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT----RE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFY   75 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE----ES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee----eC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHH
Confidence            367999999999999999999999983   3 22211    11  23445555555555421     122211 11    


Q ss_pred             -------HHHHHHHHHccCCCeEEEeCCCC------------CHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           86 -------IKLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        86 -------~~~~~~~~~~~~~~~~iidg~~~------------~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                             .+.+..++..  |..||.|.|..            ..+++..+...  ..+.||++|||++|++++.+|+.+|
T Consensus        76 A~R~~~~~~~i~paL~~--g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R  153 (213)
T 4tmk_A           76 AARVQLVETVIKPALAN--GTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARAR  153 (213)
T ss_dssp             HHHHHHHHHTHHHHHHT--TCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHC--CCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc
Confidence                   1223334433  89999996432            23444333332  5679999999999999999999988


Q ss_pred             c-CCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025          145 N-QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       145 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                      . ..+.+.....+.++....+..   +   ......+++||++.++++++++|.+.+.....
T Consensus       154 ~~~dr~E~~~~~f~~rv~~~y~~---l---a~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~  209 (213)
T 4tmk_A          154 GELDRIEQESFDFFNRTRARYLE---L---AAQDKSIHTIDATQPLEAVMDAIRTTVTHWVK  209 (213)
T ss_dssp             SSCCTTTTSCHHHHHHHHHHHHH---H---HHTCTTEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCccchhhhHHHHHHHHHHHHHH---H---HHHCCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence            1 122222223344444322211   1   12225689999999999999999988875543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.79  E-value=4.2e-18  Score=121.44  Aligned_cols=162  Identities=20%  Similarity=0.258  Sum_probs=90.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH-HhCCeEeeHHHHHHHHHHcCCC-----cHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVE-HFGYTHLSAGDLLRAEIKSGSE-----NGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~-~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (215)
                      |.+|+|+|+|||||||+++.|++ .+++.+++.|. ++..+.....     +.......       ........+...+.
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~-~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~   73 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILY   73 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHH-HHHHhhCCCccchhhhchhhhhH-------HHHHHHHHHHHHHh
Confidence            57899999999999999999999 68999999854 5554443211     11111110       01222344555552


Q ss_pred             c-cCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHH
Q 028025           95 E-SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV  171 (215)
Q Consensus        95 ~-~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (215)
                      . ..+.++|+|+++........|..+  ....+..+|||++|++++.+|+.+|  +......+.+.+++..|...     
T Consensus        74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~i~~~~~~~~~~-----  146 (181)
T 1ly1_A           74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMREY-----  146 (181)
T ss_dssp             SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC--GGGCCCHHHHHHHHHHHHHH-----
T ss_pred             hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcc--ccCCCCHHHHHHHHHHhhcc-----
Confidence            2 238899999988776655555532  1223457999999999999999988  33344566777776666542     


Q ss_pred             HHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       172 ~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                         .... .+++|++.+ ++++..|...+..
T Consensus       147 ---~~~~-~~~id~~~~-~~v~~~i~~~l~~  172 (181)
T 1ly1_A          147 ---LGLP-VYNGTPGKP-KAVIFDVDGTLAK  172 (181)
T ss_dssp             ---HTCC-CC---------------------
T ss_pred             ---CCCC-ccccCCCCC-ceeeehhhhhhhc
Confidence               1111 234777654 7777777776654

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.79  E-value=3.5e-19  Score=131.72  Aligned_cols=178  Identities=15%  Similarity=0.191  Sum_probs=103.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC---CCCCHH-HH----------
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG---KIVPSE-VT----------   85 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~----------   85 (215)
                      ++.+|+|+|++||||||+++.|++.++...++...++++  +.+++.++.+.+.+..+   ...... ..          
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~  103 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL  103 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence            578999999999999999999999984321110011111  23455556666655421   112211 11          


Q ss_pred             -HHHHHHHHHccCCCeEEEeCCCC------------CHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc-CCCC
Q 028025           86 -IKLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN-QGRE  149 (215)
Q Consensus        86 -~~~~~~~~~~~~~~~~iidg~~~------------~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~-~~~~  149 (215)
                       .+.+..++..  +..||.|.|..            ..+++..+...  ..+.||++|||++|++++.+|+.+|. ..+.
T Consensus       104 ~~~~I~paL~~--g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~  181 (236)
T 3lv8_A          104 VENVIKPALAR--GEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRI  181 (236)
T ss_dssp             HHHTHHHHHHT--TCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTT
T ss_pred             HHHHHHHHHHc--CCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchh
Confidence             1223333332  88999996431            23333333321  46799999999999999999999881 1222


Q ss_pred             CCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcccc
Q 028025          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKV  207 (215)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~~  207 (215)
                      +....++.++....+.      ........+++||++.+++++.++|.+.+.....+.
T Consensus       182 E~~~~~~~~rv~~~y~------~la~~~~~~~vIDa~~sieeV~~~I~~~l~~~l~~~  233 (236)
T 3lv8_A          182 EKMDISFFERARERYL------ELANSDDSVVMIDAAQSIEQVTADIRRALQDWLSQV  233 (236)
T ss_dssp             TTSCHHHHHHHHHHHH------HHHHHCTTEEEEETTSCHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHHHHHHH------HHHHHCCCEEEEeCCCCHHHHHHHHHHHHHHHHHhh
Confidence            2222344444443221      112222238999999999999999998887665443

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.79  E-value=2.6e-17  Score=118.60  Aligned_cols=165  Identities=16%  Similarity=0.213  Sum_probs=97.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHH-cCCCcHHHHHHHHHcCCCCCH--HHHHHH----H
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPS--EVTIKL----L   89 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~   89 (215)
                      ++|+|+|+|||||||+++.|+++++     +.+++.|+++++.+. .....+..     ......+.  ......    +
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i   76 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRD-----EMRKLSVEKQKKLQIDAAKGI   76 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHH-----HHTTSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchh-----hhhcCCHHHHHHHHHHHHHHH
Confidence            5799999999999999999999998     888988888876652 22111110     00111111  111111    2


Q ss_pred             HHHHHccCCCeEEEeCCCCCHHH--------HHHHHHhcCCCCcEEEEEecCHHHHHHH-Hhh--ccCCC-CCCcHHHH-
Q 028025           90 QKAMEESGNDKFLIDGFPRNEEN--------RAAFEAVTKIEPEFVLFFDCSEEEMERR-ILN--RNQGR-EDDNVETI-  156 (215)
Q Consensus        90 ~~~~~~~~~~~~iidg~~~~~~~--------~~~~~~~~~~~~~~~i~L~~~~e~~~~R-~~~--r~~~~-~~~~~~~~-  156 (215)
                      ...+....+..||+||++....+        ...+..   ..|+.+|||++|++++.+| +.+  |  ++ +....+.+ 
T Consensus        77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~vi~l~~~~~~~~~rr~~~~~R--~~~~~~~~~~~~  151 (194)
T 1nks_A           77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE---INPSVIFLLEADPKIILSRQKRDTTR--NRNDYSDESVIL  151 (194)
T ss_dssp             HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH---HCCSEEEEEECCHHHHHHHHHHCTTT--CCCCCCSHHHHH
T ss_pred             HHHhhccCCCEEEECCchhhccccccccCCCHHHHHh---cCCCEEEEEeCCHHHHHHHHHhhccc--CCCCccCHHHHH
Confidence            22221123789999987421111        222332   2478999999999998855 766  6  44 32233322 


Q ss_pred             -HHHHHHHhhcchhHHHHHHhcCcEEEE-cCCCCHHHHHHHHHHhh
Q 028025          157 -RKRFKVFLESSLPVVQYYEAKGKVRKI-DAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       157 -~~~~~~~~~~~~~~~~~~~~~~~~~~i-d~~~~~~e~~~~i~~~l  200 (215)
                       ..++...+.   .....+. ...++++ |++.++++++++|.+.+
T Consensus       152 ~~~~~~~~~~---~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~l  193 (194)
T 1nks_A          152 ETINFARYAA---TASAVLA-GSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHHHHH---HHHHHHH-TCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---HHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence             222222221   1122221 2456788 88899999999998775

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.78  E-value=5.4e-19  Score=127.28  Aligned_cols=166  Identities=15%  Similarity=0.236  Sum_probs=97.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCC--cHHHHHHHHHcCCCCCH---HHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSE--NGTMIQNMIKEGKIVPS---EVTIKLLQ   90 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~   90 (215)
                      +++|+|+|+|||||||+++.|+++++     +.+++.|++++........  ....      . .....   ......+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~   75 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQ------M-RKMDPETQKRIQKMAG   75 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGG------G-SSCCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHH------H-hcCCHHHHHHHHHHHH
Confidence            57899999999999999999999998     9999999998876543211  0000      0 11111   11111222


Q ss_pred             HHHHc-cCCCeEEEeCCCCCHHHH--------HHHHHhcCCCCcEEEEEecCHHHHHH-HHhh--ccCCCCCCcHHHHHH
Q 028025           91 KAMEE-SGNDKFLIDGFPRNEENR--------AAFEAVTKIEPEFVLFFDCSEEEMER-RILN--RNQGREDDNVETIRK  158 (215)
Q Consensus        91 ~~~~~-~~~~~~iidg~~~~~~~~--------~~~~~~~~~~~~~~i~L~~~~e~~~~-R~~~--r~~~~~~~~~~~~~~  158 (215)
                      ..+.. ..+..+|+||++......        ..+.. .  .|+++|||++|++++.+ |+..  |  +++....+.+..
T Consensus        76 ~~i~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~i~l~~~~~~~~~rRl~~~~R--~r~~~~~~~~~~  150 (192)
T 1kht_A           76 RKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNE-L--NPDLIIVVETTGDEILMRRMSDETR--VRDLDTASTIEQ  150 (192)
T ss_dssp             HHHHHHHTTSCEEEECCSEEEETTEEEESSCHHHHHH-H--CCSEEEEEECCHHHHHHHHHTSSSC--SSSCCCHHHHHH
T ss_pred             HHHHhhccCCeEEEccceeccccccccccCcHHHHhc-c--CCCEEEEEeCCHHHHHHHHhhhccc--CCCcCCHHHHHH
Confidence            22211 125678999865311100        12222 1  47889999999999996 8887  6  555555554443


Q ss_pred             HHHHHhhcchhHHHHHHhcCcEEEE-cCCCCHHHHHHHHHHhh
Q 028025          159 RFKVFLESSLPVVQYYEAKGKVRKI-DAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~i-d~~~~~~e~~~~i~~~l  200 (215)
                      +...... .......|.. ..++++ |.+.+++++++.|...+
T Consensus       151 ~~~~~~~-~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i  191 (192)
T 1kht_A          151 HQFMNRC-AAMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVL  191 (192)
T ss_dssp             HHHHHHH-HHHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence            3222211 1111222322 334555 44556999999998776

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.78  E-value=3.8e-19  Score=130.16  Aligned_cols=172  Identities=15%  Similarity=0.159  Sum_probs=101.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHH-----------
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI-----------   86 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   86 (215)
                      +.++++|+|+|+|||||||+++.|++.++..+++. +.++.. ..+...+..+..++..+...+.....           
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHM   84 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            44678999999999999999999999987654443 111110 00122223333333333333322111           


Q ss_pred             HHHHHHHHccCCCeEEEeCCCCCH---HH------HHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHH
Q 028025           87 KLLQKAMEESGNDKFLIDGFPRNE---EN------RAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET  155 (215)
Q Consensus        87 ~~~~~~~~~~~~~~~iidg~~~~~---~~------~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~  155 (215)
                      ..+...+..  +..+|+|+++...   ..      ...+..+  ....|+.+|||++|++++.+|+.+| ..+.. . +.
T Consensus        85 ~~i~~~l~~--~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r-~~r~~-~-~~  159 (212)
T 2wwf_A           85 NEIKSLLLK--GIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG-EEIYE-K-VE  159 (212)
T ss_dssp             HHHHHHHHH--TCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT-SSTTC-S-HH
T ss_pred             HHHHHHHhC--CCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC-ccccc-H-HH
Confidence            112222222  6789999876321   00      0111111  2357899999999999999998754 12222 2 45


Q ss_pred             HHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      +.+++...+....       .....++||++.++++++++|...+...
T Consensus       160 ~~~~~~~~~~~~~-------~~~~~~~Id~~~~~~~~~~~i~~~l~~~  200 (212)
T 2wwf_A          160 TQKKIYETYKHFA-------HEDYWINIDATRKIEDIHNDIVKEVTKI  200 (212)
T ss_dssp             HHHHHHHHGGGGT-------TCTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHh-------ccCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence            5566543332211       1335788999999999999999999776

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.78  E-value=1.5e-17  Score=120.11  Aligned_cols=166  Identities=16%  Similarity=0.266  Sum_probs=98.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH----------HHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT----------IKL   88 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~   88 (215)
                      ++|+|+|+.||||||.++.|++.+   |..++....      +.++..++.+...+......+....          ...
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~   74 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE   74 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999988   444443210      1233333333333333222221111          222


Q ss_pred             HHHHHHccCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028025           89 LQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (215)
Q Consensus        89 ~~~~~~~~~~~~~iidg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~  154 (215)
                      +...+.  .|..||.|.|..+            .++...+...  ..+.||+.|||++|++++.+|...+  .+.+. . 
T Consensus        75 I~~~L~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~--dr~e~-~-  148 (197)
T 3hjn_A           75 IKQYLS--EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL--NRFEK-R-  148 (197)
T ss_dssp             HHHHHT--TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC-----CTTCC-H-
T ss_pred             HHHHHH--CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCc--Ccccc-H-
Confidence            333333  2889999975422            2333332221  5678999999999999999997665  44332 2 


Q ss_pred             HHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (215)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~  204 (215)
                      ++.++....+.   .+..  ..+..+++||++.+++++.++|.+.++..+
T Consensus       149 ef~~rv~~~y~---~la~--~~~~~~~~IDa~~~~eeV~~~I~~~i~~rl  193 (197)
T 3hjn_A          149 EFLERVREGYL---VLAR--EHPERIVVLDGKRSIEEIHRDVVREVKRRW  193 (197)
T ss_dssp             HHHHHHHHHHH---HHHH--HCTTTEEEEETTSCHHHHHHHHHHHHSCC-
T ss_pred             HHHHHHHHHHH---HHHH--hCCCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence            34444332221   1111  123468999999999999999999998754

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.77  E-value=9.7e-17  Score=113.62  Aligned_cols=163  Identities=18%  Similarity=0.253  Sum_probs=96.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      ++|+|+|+|||||||+++.|++.+|+.+++.|++.+..  .+....+.+..   .+..........++. .+.  .+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~--~g~~~~~~~~~---~~~~~~~~~~~~~~~-~l~--~~~~v   74 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT--SGMTVADVVAA---EGWPGFRRRESEALQ-AVA--TPNRV   74 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH--HCSCHHHHHHH---HHHHHHHHHHHHHHH-HHC--CSSEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH--hCCCHHHHHHH---cCHHHHHHHHHHHHH-Hhh--cCCeE
Confidence            57999999999999999999999999999999887764  22222221111   000000111112222 222  23444


Q ss_pred             EEeCC--CCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh--hccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025          102 LIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL--NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (215)
Q Consensus       102 iidg~--~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (215)
                      +.+|.  +........+..     ++.+|||++|++++.+|+.  .|...++....+...+++..+.....+.   |.. 
T Consensus        75 i~~g~~~~~~~~~~~~l~~-----~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~-  145 (173)
T 1e6c_A           75 VATGGGMVLLEQNRQFMRA-----HGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREAL---YQD-  145 (173)
T ss_dssp             EECCTTGGGSHHHHHHHHH-----HSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHH---HHH-
T ss_pred             EECCCcEEeCHHHHHHHHc-----CCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHH---HHh-
Confidence            44442  222233333332     5789999999999999998  6621233333344455555544332222   333 


Q ss_pred             CcEEEEcCC-CCHHHHHHHHHHhhCC
Q 028025          178 GKVRKIDAA-KPVAEVFDAVKAVFTP  202 (215)
Q Consensus       178 ~~~~~id~~-~~~~e~~~~i~~~l~~  202 (215)
                       ..++||++ .+++++++.|...+..
T Consensus       146 -~~~~Id~~~~~~~~~~~~i~~~l~~  170 (173)
T 1e6c_A          146 -VAHYVVDATQPPAAIVCELMQTMRL  170 (173)
T ss_dssp             -HCSEEEETTSCHHHHHHHHHHHTTC
T ss_pred             -CcEEEECCCCCHHHHHHHHHHHhcc
Confidence             23567776 7999999999988853

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.77  E-value=6.3e-18  Score=123.63  Aligned_cols=171  Identities=13%  Similarity=0.154  Sum_probs=95.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCe--Eee----HHHHHHHHHHcCC---CcHHHHHHHHHcCCCCCHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLS----AGDLLRAEIKSGS---ENGTMIQNMIKEGKIVPSEVTIKLLQ   90 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~--~i~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (215)
                      ++++|+|+|+|||||||+++.|++.++..  ++.    .++.++..+..+.   .........+.....  .......+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~i~   80 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDF--SDRYERYIL   80 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHH--HHHHHHTHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHH--HHHHHHHHH
Confidence            46899999999999999999999999863  333    2333443332211   011110000000000  000011122


Q ss_pred             HHHHccCCCeEEEeCCCCCH-----------HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh-hccC-CCC--------
Q 028025           91 KAMEESGNDKFLIDGFPRNE-----------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL-NRNQ-GRE--------  149 (215)
Q Consensus        91 ~~~~~~~~~~~iidg~~~~~-----------~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~-~r~~-~~~--------  149 (215)
                      ..+.  .+..+|+|+++.+.           ++...+.. ....++++|||++|++++.+|+. +|.. .+.        
T Consensus        81 ~~l~--~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~  157 (213)
T 2plr_A           81 PMLK--SGFIVISDRYIYTAYARDSVRGVDIDWVKKLYS-FAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFP  157 (213)
T ss_dssp             HHHH--TTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTT-TSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCT
T ss_pred             HHHh--CCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccccccccccccccccc
Confidence            2222  37889999976432           11222222 34568999999999999999998 7721 110        


Q ss_pred             -C---CcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          150 -D---DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       150 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                       .   +..+.+.+++..++..       +.....+++||++.++++++++|...+..
T Consensus       158 ~~d~~e~~~~~~~r~~~~~~~-------~~~~~~~~~Id~~~~~e~v~~~I~~~l~~  207 (213)
T 2plr_A          158 GLSPEEGFLKYQGLITEVYDK-------LVKDENFIVIDGTKTPKEIQIQIRKFVGE  207 (213)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHH-------HTTTTTCEEEETTSCHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHHHHHH-------HHhhCCEEEEECCCCHHHHHHHHHHHHHH
Confidence             0   0112333333332211       11111578999999999999999988854

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.77  E-value=1.2e-17  Score=121.35  Aligned_cols=169  Identities=17%  Similarity=0.241  Sum_probs=98.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH-----------H
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------I   86 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~   86 (215)
                      .++++|+|+|++||||||+++.|++.+ |+.+++.+...     .....+..+...+..+........           .
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~   76 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFA   76 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999998 57666532100     011223333344333222222111           0


Q ss_pred             HHHHHHHHccCCCeEEEeCCCCC-----------HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHH
Q 028025           87 KLLQKAMEESGNDKFLIDGFPRN-----------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET  155 (215)
Q Consensus        87 ~~~~~~~~~~~~~~~iidg~~~~-----------~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~  155 (215)
                      ..+...+.  .+..+|+|+|+.+           .+....+.. ....||.+|||++|++++.+   +|...+.+  ...
T Consensus        77 ~~i~~~l~--~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~-~~~~~d~vi~l~~~~e~~~~---~R~~d~~e--~~~  148 (204)
T 2v54_A           77 SFIQEQLE--QGITLIVDRYAFSGVAYAAAKGASMTLSKSYES-GLPKPDLVIFLESGSKEINR---NVGEEIYE--DVT  148 (204)
T ss_dssp             HHHHHHHH--TTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHT-TSBCCSEEEEECCCHHHHTT---CCSSSTTC--CSH
T ss_pred             HHHHHHHH--CCCEEEEECchhhHHHHHHccCCCHHHHHHHhc-CCCCCCEEEEEeCCHHHHHh---hcCccccc--HHH
Confidence            12222332  2678999987642           222222222 34579999999999999877   44111111  124


Q ss_pred             HHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025          156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                      +.+++...+.....     .....++++|++.++++++++|.+.+.....
T Consensus       149 ~~~rl~~~y~~~~~-----~~~~~~~~Id~~~~~~~v~~~i~~~l~~~l~  193 (204)
T 2v54_A          149 FQQKVLQEYKKMIE-----EGDIHWQIISSEFEEDVKKELIKNIVIEAIH  193 (204)
T ss_dssp             HHHHHHHHHHHHHT-----TCSSCEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-----hCCCcEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence            55555442221110     1123578999999999999999988865544

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.77  E-value=2.9e-17  Score=119.67  Aligned_cols=164  Identities=16%  Similarity=0.142  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCC-----CC---------------
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-----VP---------------   81 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------------   81 (215)
                      ++|+|+|++||||||+++.|++ +|+.+++.|++.+.....+......+...+.....     ..               
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   81 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence            5899999999999999999988 99999999998876432221111111111111000     00               


Q ss_pred             ---HHH----HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028025           82 ---SEV----TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (215)
Q Consensus        82 ---~~~----~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~  154 (215)
                         ...    ....+...+....+..+|+|+.......   +.    ..+|.+|||++|++++.+|+.+|  .  ....+
T Consensus        82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~---~~----~~~d~vi~l~~~~e~~~~Rl~~R--~--~~~~e  150 (206)
T 1jjv_A           82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENK---LT----ALCDRILVVDVSPQTQLARSAQR--D--NNNFE  150 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTT---CG----GGCSEEEEEECCHHHHHHHHC---------CHH
T ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcC---cH----hhCCEEEEEECCHHHHHHHHHHc--C--CCCHH
Confidence               000    0111112222223568888974321111   22    23678999999999999999877  2  33456


Q ss_pred             HHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHH----HHHHHHHHhhCCC
Q 028025          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVA----EVFDAVKAVFTPK  203 (215)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----e~~~~i~~~l~~~  203 (215)
                      .+.+++...    .+....+... . ++||++.+++    ++.++|...+...
T Consensus       151 ~~~~r~~~q----~~~~~~~~~a-d-~vIdn~~~~~~~~~~~~~~i~~~~~~~  197 (206)
T 1jjv_A          151 QIQRIMNSQ----VSQQERLKWA-D-DVINNDAELAQNLPHLQQKVLELHQFY  197 (206)
T ss_dssp             HHHHHHHHS----CCHHHHHHHC-S-EEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc----CChHHHHHhC-C-EEEECCCCccccHHHHHHHHHHHHHHH
Confidence            666766541    1223334332 3 6777777999    9999998887643

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.76  E-value=6.7e-17  Score=115.75  Aligned_cols=168  Identities=13%  Similarity=0.161  Sum_probs=97.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (215)
                      +..|+|+|+|||||||+++.|++.+|+.+++.|++.....  +....+.+...   +...........+......  ...
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~--g~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~--~~~   77 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT--GADIAWIFEME---GEAGFRRREREMIEALCKL--DNI   77 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH--TSCHHHHHHHH---HHHHHHHHHHHHHHHHHHS--SSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc--CCChhhHHHHh---CHHHHHHHHHHHHHHHHhc--CCc
Confidence            5689999999999999999999999999999998877642  22222222111   1111112223333333222  334


Q ss_pred             EEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHH--hhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028025          101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI--LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (215)
Q Consensus       101 ~iidg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (215)
                      ++..|  ..........+..     ...+|||++|++++.+|+  ..+ ..++........+++........+.   |..
T Consensus        78 vi~~gg~~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~~~~~-~~rp~~~~~~~~~~l~~~~~~r~~~---y~~  148 (185)
T 3trf_A           78 ILATGGGVVLDEKNRQQISE-----TGVVIYLTASIDTQLKRIGQKGE-MRRPLFIKNNSKEKLQQLNEIRKPL---YQA  148 (185)
T ss_dssp             EEECCTTGGGSHHHHHHHHH-----HEEEEEEECCHHHHHHHHHCCTT-CSSCCCCCHHHHHHHHHHHHHHHHH---HHH
T ss_pred             EEecCCceecCHHHHHHHHh-----CCcEEEEECCHHHHHHHHhhcCC-CCCCCCCCCCHHHHHHHHHHHHHHH---Hhh
Confidence            44443  2233333444443     247999999999999999  443 1233333333334444433333333   333


Q ss_pred             cCcEEEEcCC-CCHHHHHHHHHHhhCCCcc
Q 028025          177 KGKVRKIDAA-KPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       177 ~~~~~~id~~-~~~~e~~~~i~~~l~~~~~  205 (215)
                      ... ++||++ .+++++++.|...+.....
T Consensus       149 ~ad-~~Idt~~~~~~e~~~~I~~~l~~~~~  177 (185)
T 3trf_A          149 MAD-LVYPTDDLNPRQLATQILVDIKQTYS  177 (185)
T ss_dssp             HCS-EEEECTTCCHHHHHHHHHHHSCC---
T ss_pred             cCC-EEEECCCCCHHHHHHHHHHHHHHHhh
Confidence            233 556664 4899999999999987654

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.76  E-value=6.4e-17  Score=123.21  Aligned_cols=170  Identities=16%  Similarity=0.136  Sum_probs=103.9

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC-----CCCCH---------
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPS---------   82 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---------   82 (215)
                      .++++++|+|+|++||||||+|+.|+ .+|+.+++.|++.+.....+......+...+...     ..+..         
T Consensus        71 ~~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~  149 (281)
T 2f6r_A           71 LPSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFG  149 (281)
T ss_dssp             SCTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhC
Confidence            34568899999999999999999999 6899999999998765444332222222111100     00000         


Q ss_pred             --H-------H----HHHHHHHHH---HccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccC
Q 028025           83 --E-------V----TIKLLQKAM---EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ  146 (215)
Q Consensus        83 --~-------~----~~~~~~~~~---~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~  146 (215)
                        .       .    ....+...+   ...+...+|+||......   .|.    ..+|.+|||++|++++.+|+.+|  
T Consensus       150 ~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~----~~~d~vI~l~a~~ev~~~Rl~~R--  220 (281)
T 2f6r_A          150 NKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQ----SMVHEVWTVVIPETEAVRRIVER--  220 (281)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGG----GGCSEEEEEECCHHHHHHHHHHH--
T ss_pred             CHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chH----HhCCEEEEEcCCHHHHHHHHHHc--
Confidence              0       0    000111111   112246899999642211   111    23689999999999999999987  


Q ss_pred             CCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025          147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (215)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~  204 (215)
                      .  ....+.+.+++....    +...++. ... ++||++.+++++.++|...+....
T Consensus       221 ~--g~s~e~~~~ri~~q~----~~~~~~~-~AD-~vIdn~~s~eel~~~I~~~l~~l~  270 (281)
T 2f6r_A          221 D--GLSEAAAQSRLQSQM----SGQQLVE-QSN-VVLSTLWESHVTQSQVEKAWNLLQ  270 (281)
T ss_dssp             H--CCCHHHHHHHHHTSC----CHHHHHH-TCS-EEEECSSCHHHHHHHHHHHHHHHH
T ss_pred             C--CCCHHHHHHHHHHcC----ChHhhHh-hCC-EEEECCCCHHHHHHHHHHHHHHHH
Confidence            2  234566666655431    2222222 233 567777899999999998886543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.76  E-value=3.6e-16  Score=110.97  Aligned_cols=161  Identities=14%  Similarity=0.174  Sum_probs=95.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHH----HHcCCCcHH-HHHHHHHcCCCCCHHHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQKAM   93 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   93 (215)
                      .++.+|+|+|++||||||+++.|++.+|+.+++.|++....    ...+..... .....+        ......+...+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~   77 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL--------QALNDAAFAMQ   77 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHH--------HHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHH--------HHHHHHHHHHH
Confidence            45679999999999999999999999999999987763210    011111111 000000        01112222222


Q ss_pred             HccCCCeEEEeCCCCCHHHHHHHHHhcCCCCc-EEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHH
Q 028025           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ  172 (215)
Q Consensus        94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~-~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (215)
                      ..  +..+|+|...........+.. .  .++ .+|||++|++++.+|+.+|  +........+...+..+.    +.  
T Consensus        78 ~~--~~~~vi~~~~~~~~~~~~l~~-~--~~~~~vv~l~~~~e~~~~R~~~R--~~~~~~~~~~~~~~~~~~----~~--  144 (175)
T 1knq_A           78 RT--NKVSLIVCSALKKHYRDLLRE-G--NPNLSFIYLKGDFDVIESRLKAR--KGHFFKTQMLVTQFETLQ----EP--  144 (175)
T ss_dssp             HH--CSEEEEECCCCSHHHHHHHHT-T--CTTEEEEEEECCHHHHHHHHHTS--TTCCCCHHHHHHHHHHCC----CC--
T ss_pred             hc--CCcEEEEeCchHHHHHHHHHh-c--CCCEEEEEEECCHHHHHHHHHhc--cCCCCchHHHHHHHHhhh----Cc--
Confidence            21  567888853333333334433 2  234 6999999999999999988  322222333333322211    11  


Q ss_pred             HHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          173 YYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       173 ~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      .|.. ...++||++.++++++++|...+.
T Consensus       145 ~~~~-~~~~~Id~~~~~~~~~~~i~~~l~  172 (175)
T 1knq_A          145 GADE-TDVLVVDIDQPLEGVVASTIEVIK  172 (175)
T ss_dssp             CTTC-TTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             ccCC-CCeEEEeCCCCHHHHHHHHHHHHh
Confidence            0222 236788888899999999998774

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.75  E-value=2.2e-16  Score=114.55  Aligned_cols=162  Identities=14%  Similarity=0.142  Sum_probs=98.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHH-------HHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV-------TIKLLQ   90 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~   90 (215)
                      ..++.+|+|+|++||||||+++.|++.+|..+++.+++......          .....+....+..       ....+.
T Consensus        26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~~~~~   95 (200)
T 4eun_A           26 GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENI----------ATMQRGIPLTDEDRWPWLRSLAEWMD   95 (200)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHH----------HHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHH----------HHHhcCCCCCCcccccHHHHHHHHHH
Confidence            34678999999999999999999999999999998775321100          0001111111111       111222


Q ss_pred             HHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhH
Q 028025           91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV  170 (215)
Q Consensus        91 ~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (215)
                      ..+.  .+..+|+|...........+..  ...+..+|||++|++++.+|+.+|  +......+.+...+..+..    .
T Consensus        96 ~~~~--~g~~viid~~~~~~~~~~~l~~--~~~~~~vv~l~~~~e~l~~Rl~~R--~~~~~~~~~l~~~~~~~~~----~  165 (200)
T 4eun_A           96 ARAD--AGVSTIITCSALKRTYRDVLRE--GPPSVDFLHLDGPAEVIKGRMSKR--EGHFMPASLLQSQLATLEA----L  165 (200)
T ss_dssp             HHHH--TTCCEEEEECCCCHHHHHHHTT--SSSCCEEEEEECCHHHHHHHHTTC--SCCSSCGGGHHHHHHHCCC----C
T ss_pred             HHHh--cCCCEEEEchhhhHHHHHHHHH--hCCceEEEEEeCCHHHHHHHHHhc--ccCCCCHHHHHHHHHHhCC----C
Confidence            2222  2567788875444444444443  233557999999999999999988  3222223333333322211    1


Q ss_pred             HHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          171 VQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       171 ~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                         |... ..++||++.++++++++|...+...
T Consensus       166 ---~~~~-~~~~Id~~~~~~e~~~~I~~~l~~~  194 (200)
T 4eun_A          166 ---EPDE-SGIVLDLRQPPEQLIERALTWLDIA  194 (200)
T ss_dssp             ---CTTS-CEEEEETTSCHHHHHHHHHHHHCCC
T ss_pred             ---CCCC-CeEEEECCCCHHHHHHHHHHHHHhc
Confidence               2221 4678888889999999999999754

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.75  E-value=7.7e-17  Score=121.53  Aligned_cols=166  Identities=19%  Similarity=0.227  Sum_probs=102.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH---hCCeEe--eHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH---FGYTHL--SAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~---~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (215)
                      .++++|+|+|+|||||||+++.|++.   .|+.++  +.|.+ +..+..-...++..          ........+...+
T Consensus         2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~-~~~l~~~~~~~e~~----------~~~~~~~~i~~~l   70 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI-RESFPVWKEKYEEF----------IKKSTYRLIDSAL   70 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH-HTTSSSCCGGGHHH----------HHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH-HHHHhhhhHHHHHH----------HHHHHHHHHHHHh
Confidence            45789999999999999999999998   677776  76553 33211100001100          0011123344443


Q ss_pred             HccCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHH
Q 028025           94 EESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV  171 (215)
Q Consensus        94 ~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (215)
                      .   ...+|+|+.+........+...  ....++.+|||++|++++.+|+.+|  ++. ...+.+.+....|..   +. 
T Consensus        71 ~---~~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R--~~~-~~~~~l~~~~~~~e~---~~-  140 (260)
T 3a4m_A           71 K---NYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER--GEK-IPNEVIKKMYEKFDE---PG-  140 (260)
T ss_dssp             T---TSEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHT--TCS-SCHHHHHHHHHHCCC---TT-
T ss_pred             h---CCEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhC--CCC-CCHHHHHHHHHHhcC---cc-
Confidence            2   2789999976665555544432  3456789999999999999999988  432 233444433333322   11 


Q ss_pred             HHHHhcCcEEEEcCCC--CHHHHHHHHHHhhCCCcc
Q 028025          172 QYYEAKGKVRKIDAAK--PVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       172 ~~~~~~~~~~~id~~~--~~~e~~~~i~~~l~~~~~  205 (215)
                      ..|......++||++.  +++++++.|...+....+
T Consensus       141 ~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~~~~~  176 (260)
T 3a4m_A          141 KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEIPK  176 (260)
T ss_dssp             SSCGGGCCSEEEETTSCCCHHHHHHHHHHHHTSCCC
T ss_pred             ccCCCCCCEEEEeCCCCCCHHHHHHHHHhcccCCCC
Confidence            1122123457888865  899999999998876544

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.75  E-value=5.1e-17  Score=116.29  Aligned_cols=167  Identities=16%  Similarity=0.214  Sum_probs=94.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (215)
                      +++|+|+|+|||||||+|+.|++.+|+.+++.|++.+...  +....+.+.   ..+...........+......  ...
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~--g~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~--~~~   74 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRSIADIFA---TDGEQEFRRIEEDVVRAALAD--HDG   74 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSCHHHHHH---HHCHHHHHHHHHHHHHHHHHH--CCS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc--CCCHHHHHH---HhChHHHHHHHHHHHHHHHhc--CCe
Confidence            3579999999999999999999999999999999877653  222211111   112111112222333333222  334


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcE
Q 028025          101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV  180 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (215)
                      ++..|...... ...+.. ..  .+.+|||++|++++.+|+.+|. +++........+++..+.....+   .|.... .
T Consensus        75 vi~~g~~~v~~-~~~~~~-l~--~~~vV~L~~~~e~~~~Rl~~r~-~r~~~~~~~~~~~i~~~~~~r~~---~~~~~~-~  145 (184)
T 2iyv_A           75 VLSLGGGAVTS-PGVRAA-LA--GHTVVYLEISAAEGVRRTGGNT-VRPLLAGPDRAEKYRALMAKRAP---LYRRVA-T  145 (184)
T ss_dssp             EEECCTTGGGS-HHHHHH-HT--TSCEEEEECCHHHHHHHTTCCC-CCSSTTSCCHHHHHHHHHHHHHH---HHHHHC-S
T ss_pred             EEecCCcEEcC-HHHHHH-Hc--CCeEEEEeCCHHHHHHHHhCCC-CCCCccCCCHHHHHHHHHHHHHH---HHhccC-C
Confidence            44444221111 111222 11  4579999999999999998771 11111101122233333222112   233333 3


Q ss_pred             EEEcCC-CCHHHHHHHHHHhhCCC
Q 028025          181 RKIDAA-KPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       181 ~~id~~-~~~~e~~~~i~~~l~~~  203 (215)
                      ++||++ .+++++++.|...+...
T Consensus       146 ~~Idt~~~s~ee~~~~I~~~l~~~  169 (184)
T 2iyv_A          146 MRVDTNRRNPGAVVRHILSRLQVP  169 (184)
T ss_dssp             EEEECSSSCHHHHHHHHHTTSCCC
T ss_pred             EEEECCCCCHHHHHHHHHHHHhhc
Confidence            677776 79999999999988654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.75  E-value=9.6e-18  Score=122.90  Aligned_cols=177  Identities=15%  Similarity=0.236  Sum_probs=93.0

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHH---------
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI---------   86 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   86 (215)
                      +++.++++|+|+|+|||||||+++.|++.++..+++.+. +++. ..+...+..+...+..+...+.....         
T Consensus         4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~   81 (215)
T 1nn5_A            4 MAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL-LRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWE   81 (215)
T ss_dssp             ---CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-EESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHT
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE-eeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            345678899999999999999999999988543222210 0000 00111222223333222222221110         


Q ss_pred             --HHHHHHHHccCCCeEEEeCCCC------------CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025           87 --KLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (215)
Q Consensus        87 --~~~~~~~~~~~~~~~iidg~~~------------~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~  152 (215)
                        ..+...+.  .+..+|+|++..            ..++...+.. ....|+++|||++|++++.+|+..| ..+. +.
T Consensus        82 ~~~~i~~~l~--~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~Rl~r~-~~~~-~~  156 (215)
T 1nn5_A           82 QVPLIKEKLS--QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV-GLPKPDLVLFLQLQLADAAKRGAFG-HERY-EN  156 (215)
T ss_dssp             THHHHHHHHH--TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGT-TSBCCSEEEEEECCHHHHHHC------CTT-CS
T ss_pred             HHHHHHHHHH--CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHhccC-cccc-ch
Confidence              12333332  267899995421            1222222222 2346899999999999999999643 1122 22


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                       ..+.+++...+.....     .....++++|++.++++++++|...+.....
T Consensus       157 -~~~~~~~~~~~~~~~~-----~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~  203 (215)
T 1nn5_A          157 -GAFQERALRCFHQLMK-----DTTLNWKMVDASKSIEAVHEDIRVLSEDAIA  203 (215)
T ss_dssp             -HHHHHHHHHHHHHHTT-----CTTSCEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHH-----hCCCCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence             2334443322111000     0123568889989999999999988865543

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.74  E-value=1.7e-16  Score=116.58  Aligned_cols=167  Identities=19%  Similarity=0.201  Sum_probs=98.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHc-----CCCCCHHH---------
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEV---------   84 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---------   84 (215)
                      .++++|+|+|++||||||+++.|++ +|+.+++.|++.+.....+......+...+..     ...+....         
T Consensus         2 ~~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~   80 (218)
T 1vht_A            2 SLRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANP   80 (218)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCH
Confidence            4678999999999999999999988 99999999998877543332222222222210     00111111         


Q ss_pred             ---------HHHHHH----HHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028025           85 ---------TIKLLQ----KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (215)
Q Consensus        85 ---------~~~~~~----~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~  151 (215)
                               ....+.    ..+....+..+++|+ +...+..  |.    ..+|.+|||++|++++.+|+.+|  +  ..
T Consensus        81 ~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~~l~~~~--~~----~~~d~vi~l~~~~e~~~~Rl~~R--~--~~  149 (218)
T 1vht_A           81 EEKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVENS--LY----KKANRVLVVDVSPETQLKRTMQR--D--DV  149 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTTT--GG----GGCSEEEEEECCHHHHHHHHHHH--H--TC
T ss_pred             HHHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-eeeeccC--cc----ccCCEEEEEECCHHHHHHHHHHc--C--CC
Confidence                     011111    112221244566665 2222211  22    24789999999999999999987  2  23


Q ss_pred             cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      ..+.+.+++....    +...+.. ... ++||++.+++++.++|...+...
T Consensus       150 ~~~~~~~~~~~~~----~~~~~~~-~ad-~vId~~~~~~~~~~~I~~~l~~~  195 (218)
T 1vht_A          150 TREHVEQILAAQA----TREARLA-VAD-DVIDNNGAPDAIASDVARLHAHY  195 (218)
T ss_dssp             CHHHHHHHHHHSC----CHHHHHH-HCS-EEEECSSCTTSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcC----ChHHHHH-hCC-EEEECCCCHHHHHHHHHHHHHHH
Confidence            3455666655421    1222222 222 57777779999999988877643

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.73  E-value=4.1e-17  Score=115.07  Aligned_cols=159  Identities=16%  Similarity=0.229  Sum_probs=92.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      +.|+|+|+|||||||+++.|++.+++.+++.|++.+...  +....+.+.   ..+..........++. .+.. .+..|
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~--g~~~~~~~~---~~~~~~~~~~~~~~l~-~l~~-~~~~V   73 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE--GLSIPQIFE---KKGEAYFRKLEFEVLK-DLSE-KENVV   73 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHHHHHH---HSCHHHHHHHHHHHHH-HHTT-SSSEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc--CCCHHHHHH---HhChHHHHHHHHHHHH-HHhc-cCCeE
Confidence            479999999999999999999999999999998877653  222221111   1111000111122222 2221 24445


Q ss_pred             EEeCC--CCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC--cHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025          102 LIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD--NVETIRKRFKVFLESSLPVVQYYEAK  177 (215)
Q Consensus       102 iidg~--~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (215)
                      |.+|.  +........+.     .++.+|||++|++++.+|+.+|. .++..  ..+.+.+++...       ...|.. 
T Consensus        74 i~~g~~~~~~~~~~~~l~-----~~~~~i~l~~~~e~~~~R~~~r~-~r~~~~~~~~~i~~~~~~~-------~~~~~~-  139 (168)
T 2pt5_A           74 ISTGGGLGANEEALNFMK-----SRGTTVFIDIPFEVFLERCKDSK-ERPLLKRPLDEIKNLFEER-------RKIYSK-  139 (168)
T ss_dssp             EECCHHHHTCHHHHHHHH-----TTSEEEEEECCHHHHHHHCBCTT-CCBGGGSCGGGTHHHHHHH-------HHHHTT-
T ss_pred             EECCCCEeCCHHHHHHHH-----cCCEEEEEECCHHHHHHHHhCCC-CCCCCcchHHHHHHHHHHH-------HHHHHh-
Confidence            54441  22222222322     26799999999999999998761 12221  122233332211       122333 


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          178 GKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       178 ~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      ..+++ +++.++++++++|...+..
T Consensus       140 ~~~~i-~~~~~~~~~~~~i~~~l~~  163 (168)
T 2pt5_A          140 ADIKV-KGEKPPEEVVKEILLSLEG  163 (168)
T ss_dssp             SSEEE-ECSSCHHHHHHHHHHHHHT
T ss_pred             CCEEE-CCCCCHHHHHHHHHHHHHh
Confidence            44566 7778999999999988853

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.73  E-value=2.6e-17  Score=120.54  Aligned_cols=170  Identities=14%  Similarity=0.142  Sum_probs=91.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCC----eEee-HHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH-------
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY----THLS-AGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-------   85 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~----~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   85 (215)
                      ..++++|+|+|++||||||+++.|++.++.    .++. .    ++  +.+++.++.+.+++...........       
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~t----re--P~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~   91 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLT----RE--PGGTLLNESVRNLLFKAQGLDSLSELLFFIAM   91 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEE----ES--SCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEee----eC--CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence            456899999999999999999999998754    2222 1    00  1233344444444432111221111       


Q ss_pred             -H----HHHHHHHHccCCCeEEEeCCCC------------CHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccC
Q 028025           86 -I----KLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQ  146 (215)
Q Consensus        86 -~----~~~~~~~~~~~~~~~iidg~~~------------~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~  146 (215)
                       .    +.+...+..  +..||.|.|..            ..+++..+...  . +.||++|||++|++++.+|+ +|  
T Consensus        92 R~~~~~~~I~paL~~--g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~r--  165 (223)
T 3ld9_A           92 RREHFVKIIKPSLMQ--KKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CK--  165 (223)
T ss_dssp             HHHHHHHTHHHHHHT--TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC-------------
T ss_pred             HHHHHHHHHHHHHhc--CCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-cc--
Confidence             1    123333332  78999997542            13344444332  3 78999999999999999998 55  


Q ss_pred             CCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025          147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                      ++.+....++.+++...+..   +...+  +..+++||++.+++++ ++|.+.+.....
T Consensus       166 dr~E~~~~e~~~rv~~~y~~---la~~~--~~~~~vIDa~~sieeV-~~I~~~l~~~lg  218 (223)
T 3ld9_A          166 NGYEFADMEFYYRVRDGFYD---IAKKN--PHRCHVITDKSETYDI-DDINFVHLEVIK  218 (223)
T ss_dssp             ------CHHHHHHHHHHHHH---HHHHC--TTTEEEEESSCSSSCC-CHHHHHHHHHHH
T ss_pred             CccccchHHHHHHHHHHHHH---HHHHC--CCCEEEEcCCCCHHHH-HHHHHHHHHHHh
Confidence            44332223444444432221   11112  2368999999999999 999888765543

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.72  E-value=3.5e-16  Score=113.13  Aligned_cols=166  Identities=14%  Similarity=0.089  Sum_probs=109.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC-----CCCCHHHH----------
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEVT----------   85 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----------   85 (215)
                      ...|.|+|.+||||||+++.|++ +|+.++++|.+.++.+..+......+.+.+...     ..+....+          
T Consensus         9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~   87 (210)
T 4i1u_A            9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA   87 (210)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence            45799999999999999999988 999999999998888766655444444433221     11221111          


Q ss_pred             ------------HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028025           86 ------------IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (215)
Q Consensus        86 ------------~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~  153 (215)
                                  ...+...+...+...+++|. |...+. ..+..    .+|.+|++++|+++..+|+.+|    ...+.
T Consensus        88 ~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~-~~~~~----~~D~vi~V~ap~e~r~~Rl~~R----dg~s~  157 (210)
T 4i1u_A           88 RRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVES-RNWKA----RCDRVLVVDCPVDTQIARVMQR----NGFTR  157 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTC-HHHHH----HCSEEEEEECCHHHHHHHHHHH----HCCCH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-eccccc-CCccc----cCCeEEEEECCHHHHHHHHHhc----CCCCH
Confidence                        12222333333355788886 322331 12222    2789999999999999999988    24567


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhCCC
Q 028025          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~~~  203 (215)
                      +.+.+++....    +..... .... ++|+++ ++++++.++|..++...
T Consensus       158 eea~~ri~~Q~----~~eek~-~~AD-~VIdN~~gsle~l~~qV~~l~~~~  202 (210)
T 4i1u_A          158 EQVEAIIARQA----TREARL-AAAD-DVIVNDAATPDALAVQVDALHQRY  202 (210)
T ss_dssp             HHHHHHHHHSC----CHHHHH-HTCS-EEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC----ChHHHH-HhCC-EEEECCCCCHHHHHHHHHHHHHHH
Confidence            77777765432    222222 2222 667777 89999999998887654

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=99.72  E-value=6.8e-17  Score=117.86  Aligned_cols=176  Identities=13%  Similarity=0.221  Sum_probs=106.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC-CCCHH-HH----------H
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-IVPSE-VT----------I   86 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~----------~   86 (215)
                      .++++|+|.|++||||||+++.|++.++..+..    +++. ..+++.++.+.+++.... ..... ..          .
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~----~~ep-~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~   77 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LKFP-ERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIV   77 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE----EESS-CTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccceE----EEec-CCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999852211    1110 124455556666655432 12211 11          1


Q ss_pred             HHHHHHHHccCCCeEEEeCCCCC--------------HHHHHHHHHhcCCCCcEEEEE-ecCHHHHHHHHhhccCCCCCC
Q 028025           87 KLLQKAMEESGNDKFLIDGFPRN--------------EENRAAFEAVTKIEPEFVLFF-DCSEEEMERRILNRNQGREDD  151 (215)
Q Consensus        87 ~~~~~~~~~~~~~~~iidg~~~~--------------~~~~~~~~~~~~~~~~~~i~L-~~~~e~~~~R~~~r~~~~~~~  151 (215)
                      +.+..++..  +..||.|.|..+              ..+...+.. ..+.||++||| ++|++++.+|+..+ ..+. +
T Consensus        78 ~~I~paL~~--g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~-~~~~PDlti~L~dv~pe~~~~R~~~~-~dr~-E  152 (216)
T 3tmk_A           78 DKIKKDLLE--GKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDV-GLLKPDLTLFLSTQDVDNNAEKSGFG-DERY-E  152 (216)
T ss_dssp             HHHHHHHHT--TCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGT-TSBCCSEEEEEECSCCSCGGGCCSSS-CCTT-C
T ss_pred             HHHHHHHHc--CCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhh-CCCCCCEEEEEeCCCHHHHHHHhccC-cccc-c
Confidence            223333332  889999975422              111111111 45789999999 99999999987644 1222 3


Q ss_pred             cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEc-CCCCHHHHHHHHHHhhCCCccc
Q 028025          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKID-AAKPVAEVFDAVKAVFTPKDEK  206 (215)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id-~~~~~~e~~~~i~~~l~~~~~~  206 (215)
                      . .+++++....+..+...... ..+..+++|| ++.+++++.++|.+.+......
T Consensus       153 ~-~~f~~rvr~~Y~~la~~~~~-~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~~  206 (216)
T 3tmk_A          153 T-VKFQEKVKQTFMKLLDKEIR-KGDESITIVDVTNKGIQEVEALIWQIVEPVLST  206 (216)
T ss_dssp             C-HHHHHHHHHHHHHHHHHHHH-TTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             H-HHHHHHHHHHHHHHHHhccc-cCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence            3 35555554433221110000 1345789999 8999999999999888766554

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.72  E-value=9.8e-17  Score=116.66  Aligned_cols=164  Identities=18%  Similarity=0.242  Sum_probs=98.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC-----CCCHHH------------
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-----IVPSEV------------   84 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------------   84 (215)
                      ++|+|+|++||||||+++.|++ +|+.+++.|++++.....+......+........     ......            
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   80 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL   80 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence            4799999999999999999999 9999999999887643222111111211111000     011100            


Q ss_pred             ------HHH----HHHHHHHccCC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028025           85 ------TIK----LLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (215)
Q Consensus        85 ------~~~----~~~~~~~~~~~-~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~  153 (215)
                            ...    .+...+....+ ..+|+|+......   .+.    ..++.+|||++|++++.+|+.+|  +.   ..
T Consensus        81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~---~~~----~~~~~~i~l~~~~e~~~~Rl~~R--~~---~~  148 (204)
T 2if2_A           81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEK---GTY----KNYDKLIVVYAPYEVCKERAIKR--GM---SE  148 (204)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTT---TCG----GGSSEEEEECCCHHHHHHHHHHT--CC---CH
T ss_pred             HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccC---Cch----hhCCEEEEEECCHHHHHHHHHHc--CC---CH
Confidence                  001    11112222233 7889998532111   111    23678999999999999999987  42   34


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (215)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~  204 (215)
                      +.+.+++....    +... +..... ++||++.++++++++|...+....
T Consensus       149 ~~~~~~~~~~~----~~~~-~~~~ad-~vId~~~~~~~~~~~i~~~l~~~~  193 (204)
T 2if2_A          149 EDFERRWKKQM----PIEE-KVKYAD-YVIDNSGSIEETYKQVKKVYEELT  193 (204)
T ss_dssp             HHHHHHHTTSC----CHHH-HGGGCS-EECCCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCC----ChhH-HHhcCC-EEEECCCCHHHHHHHHHHHHHHHh
Confidence            45555544322    2222 222333 678888899999999999886543

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.72  E-value=8.2e-16  Score=112.00  Aligned_cols=163  Identities=18%  Similarity=0.201  Sum_probs=98.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHH----cCCC--cHHHHHHHHH-----------------cCCC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSE--NGTMIQNMIK-----------------EGKI   79 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~----~~~~--~~~~~~~~~~-----------------~~~~   79 (215)
                      +|+|+|++||||||+++.|++.+|+.+++.|++++....    .+..  ....+.....                 .+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   83 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED   83 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence            899999999999999999999999999999999877542    1221  1112222111                 1111


Q ss_pred             CC-----H------------HHHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh
Q 028025           80 VP-----S------------EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL  142 (215)
Q Consensus        80 ~~-----~------------~~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~  142 (215)
                      .+     .            ..+.+.+........ .++|+||.... .      . ....++++|||++|++++.+|+.
T Consensus        84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~vi~g~~~~-~------~-~~~~~d~~i~l~a~~e~~~~R~~  154 (208)
T 3ake_A           84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP-PPFVAEGRDMG-T------A-VFPEAAHKFYLTASPEVRAWRRA  154 (208)
T ss_dssp             CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC-SCEEEEESSCC-C------C-CCTTCSEEEEEECCHHHHHHHHH
T ss_pred             CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc-CCEEEEcccee-E------E-EecCCcEEEEEECCHHHHHHHHH
Confidence            11     0            011122222222223 67899986432 0      1 23457899999999999999998


Q ss_pred             hccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCC-CHHHHHHHHHHhhC
Q 028025          143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAK-PVAEVFDAVKAVFT  201 (215)
Q Consensus       143 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~e~~~~i~~~l~  201 (215)
                      +|  ..  ...+.+.+++..........   +......++||++. ++++++++|...++
T Consensus       155 ~r--~~--~~~~~~~~~~~~R~~~~~~~---~~~~ad~~~Id~~~~~~ee~~~~I~~~~~  207 (208)
T 3ake_A          155 RE--RP--QAYEEVLRDLLRRDERDKAQ---SAPAPDALVLDTGGMTLDEVVAWVLAHIR  207 (208)
T ss_dssp             HT--SS--SCHHHHHHHHHHHHHTC--C---CCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred             hh--cc--cCHHHHHHHHHHHHHHHhhc---ccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence            87  22  33455555554321111000   02223447888875 99999999988763

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.72  E-value=1.1e-15  Score=109.14  Aligned_cols=162  Identities=15%  Similarity=0.161  Sum_probs=89.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEe-eH---HHHHHHHHHcCCCcHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL-SA---GDLLRAEIKSGSENGTMIQNMIKEGKIVP-SEVTIKLLQKAM   93 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   93 (215)
                      .++++|+|+|+|||||||+++.|++.+++.++ +.   ++.++.....+...       +..  ... .....+.+...+
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~~i~~~~~~g~~~-------~~~--~~~~~~~~~~~i~~~l   73 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGD-------PQE--HPMWIPLMLDALQYAS   73 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHHHHHHHTSTTCCSC-------GGG--STTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHHHHHHhCccccch-------hhh--hHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999998887 43   22222221111000       000  000 122234444444


Q ss_pred             HccCCCeEEEeCCCCCHHHHHH----HHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchh
Q 028025           94 EESGNDKFLIDGFPRNEENRAA----FEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP  169 (215)
Q Consensus        94 ~~~~~~~~iidg~~~~~~~~~~----~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  169 (215)
                      .. .+..+|+|+..........    +.. .... ...|||++|++++.+|+.+|. .++ ...+.+...+..+    .+
T Consensus        74 ~~-~g~~vi~d~~~~~~~~~~~~~~~l~~-~~~~-~~~i~l~~~~e~~~~R~~~R~-~r~-~~~~~~~~~~~~~----~~  144 (183)
T 2vli_A           74 RE-AAGPLIVPVSISDTARHRRLMSGLKD-RGLS-VHHFTLIAPLNVVLERLRRDG-QPQ-VNVGTVEDRLNEL----RG  144 (183)
T ss_dssp             HH-CSSCEEEEECCCCHHHHHHHHHHHHH-TTCC-CEEEEEECCHHHHHHHHHTC------CCHHHHHHHHHHH----TS
T ss_pred             Hh-CCCcEEEeeeccCHHHHHHHHHHHHh-cCCc-eEEEEEeCCHHHHHHHHHhcc-ccc-hhHHHHHHHHHhh----cc
Confidence            33 2677888976554432222    222 2222 256999999999999999871 122 2233333222222    22


Q ss_pred             HHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhCCCcc
Q 028025          170 VVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       170 ~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~~~~~  205 (215)
                      . . +   . . +||++ .++++++++|.+.+.....
T Consensus       145 ~-~-~---~-~-~Id~~~~~~~~~~~~I~~~l~~~~~  174 (183)
T 2vli_A          145 E-Q-F---Q-T-HIDTAGLGTQQVAEQIAAQVGLTLA  174 (183)
T ss_dssp             G-G-G---C-S-EEECTTCCHHHHHHHHHHHHTCCCC
T ss_pred             c-c-c---c-e-EeeCCCCCHHHHHHHHHHHHHHhcC
Confidence            2 1 1   2 3 77876 8999999999999987644

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.71  E-value=8.1e-16  Score=113.58  Aligned_cols=169  Identities=18%  Similarity=0.249  Sum_probs=97.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHH----cCCCcH--HHHHHHHHc-----------------
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSENG--TMIQNMIKE-----------------   76 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~----~~~~~~--~~~~~~~~~-----------------   76 (215)
                      ++++|+|+|++||||||+++.|++.+|+.+++.|++++....    .+....  .........                 
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE   83 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence            357899999999999999999999999999999999987542    333221  122222110                 


Q ss_pred             CCCCCHH-----------------HHHHHHHHHHHc-cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHH
Q 028025           77 GKIVPSE-----------------VTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME  138 (215)
Q Consensus        77 ~~~~~~~-----------------~~~~~~~~~~~~-~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~  138 (215)
                      +..+++.                 .....+...... ..+.++++||.....       . ....++++|||+++++++.
T Consensus        84 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~-------~-~~~~~d~~i~l~~~~e~~~  155 (227)
T 1cke_A           84 GEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT-------V-VFPDAPVKIFLDASSEERA  155 (227)
T ss_dssp             TEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC-------C-CCTTCSEEEEEECCHHHHH
T ss_pred             CeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc-------e-EecCCCEEEEEeCCHHHHH
Confidence            1111111                 111222222111 126789999963211       1 3346889999999999999


Q ss_pred             HHHhhc--cCCCCCCcHHHHHHHHH-----HHhhcchhHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhC
Q 028025          139 RRILNR--NQGREDDNVETIRKRFK-----VFLESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFT  201 (215)
Q Consensus       139 ~R~~~r--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~  201 (215)
                      +|+..+  .+++. ...+...+++.     .+.....++    ......+++|++ .++++++++|.+.+.
T Consensus       156 ~R~~~~l~~rg~~-~~~~~~~~~i~~R~~~~~~~~~~pl----~~~~~~~~Id~~~~~~~ev~~~I~~~l~  221 (227)
T 1cke_A          156 HRRMLQLQVKGFS-VNFERLLAEIKERDDRDRNRAVAPL----VPAADALVLDSTTLSIEQVIEKALQYAR  221 (227)
T ss_dssp             HHHHHHHHHHTCC-CCHHHHHHHHC-------------C----CCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcc-CCHHHHHHHHHHHHHhhhhhcccCc----cCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence            995432  12432 12333333332     122111222    111224788887 799999999998875

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.71  E-value=2.2e-16  Score=114.71  Aligned_cols=167  Identities=16%  Similarity=0.173  Sum_probs=91.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHH----HHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG----DLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (215)
                      ++|+|+|++||||||+++.|++.++..++...    .+++.....    .... ....  .   .......++.......
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~----~~~~-~~~~--~---~~~~~~r~~~~~~~~~   70 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKD----LKKT-VFKM--Q---IYMLTARSKQLKQAKN   70 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTC----HHHH-HHHH--H---HHHHHHHHHHHC----
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhC----cccc-chhH--H---HHHHHHHHHHHHHhhc
Confidence            47999999999999999999999998766421    111111000    0000 0000  0   0000111111100111


Q ss_pred             CCeEEEeCCCCCHHHH------------------HHHHH-h--c-------CCCCcEEEEEecCHHHHHHHHhhccCCCC
Q 028025           98 NDKFLIDGFPRNEENR------------------AAFEA-V--T-------KIEPEFVLFFDCSEEEMERRILNRNQGRE  149 (215)
Q Consensus        98 ~~~~iidg~~~~~~~~------------------~~~~~-~--~-------~~~~~~~i~L~~~~e~~~~R~~~r~~~~~  149 (215)
                      ...+|+|+++..-...                  ..+.. .  .       ...++.+|||++|++++.+|+.+|  +++
T Consensus        71 ~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R--~r~  148 (205)
T 2jaq_A           71 LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKR--GRS  148 (205)
T ss_dssp             --CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHH--TCH
T ss_pred             cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHc--CCh
Confidence            2249999876531110                  01111 0  1       257899999999999999999887  443


Q ss_pred             CCcH--HHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          150 DDNV--ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       150 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      .+..  ....+++...+..   ....|......+++|++.++++++++|...+...
T Consensus       149 ~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~  201 (205)
T 2jaq_A          149 EELLIGEEYWETLNKNYEE---FYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSI  201 (205)
T ss_dssp             HHHHSCHHHHHHHHHHHHH---HHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred             hhhcCcHHHHHHHHHHHHH---HHHHccccCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence            2211  1333444433321   2333432345788999889999999999888643

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.69  E-value=9.1e-16  Score=111.34  Aligned_cols=167  Identities=19%  Similarity=0.211  Sum_probs=99.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHc---CCCCCHHHH---------
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE---GKIVPSEVT---------   85 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---------   85 (215)
                      +.++++|+|+|++||||||+++.|++. |+.+++.|++++... .+..  ..+...+..   ...+....+         
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~   80 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSDPE   80 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTSHH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCCHH
Confidence            456789999999999999999999998 999999999887764 2111  111111100   001111111         


Q ss_pred             -----H----HHH-HHHHH---ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025           86 -----I----KLL-QKAME---ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (215)
Q Consensus        86 -----~----~~~-~~~~~---~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~  152 (215)
                           .    ..+ ...+.   ..++..+|+|+... .+.  .+    ...++.+|||++|++++.+|+.+|  +  ...
T Consensus        81 ~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~~l-~~~--~~----~~~~d~~i~l~~~~e~~~~R~~~R--~--~~~  149 (203)
T 1uf9_A           81 RLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLL-FEK--GW----EGRLHGTLLVAAPLEERVRRVMAR--S--GLS  149 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECTTT-TTT--TC----GGGSSEEEEECCCHHHHHHHHHTT--T--CCT
T ss_pred             HHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEecce-ecc--Cc----hhhCCEEEEEECCHHHHHHHHHHc--C--CCC
Confidence                 0    111 01111   22267889997321 111  11    123689999999999999999877  2  222


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                      .+.+..++...    .+...+... .. +++|++.++++++++|...+.....
T Consensus       150 ~~~~~~~i~~~----~~~~~~~~~-ad-~vId~~~~~~~~~~~i~~~~~~~~~  196 (203)
T 1uf9_A          150 REEVLARERAQ----MPEEEKRKR-AT-WVLENTGSLEDLERALKAVLAELTG  196 (203)
T ss_dssp             THHHHHHHTTS----CCHHHHHHH-CS-EEECCSSHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHC----CChhHHHHh-CC-EEEECCCCHHHHHHHHHHHHHHHHh
Confidence            34455554431    112222222 23 5788877999999999998875543

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.69  E-value=3.1e-16  Score=111.31  Aligned_cols=158  Identities=16%  Similarity=0.214  Sum_probs=92.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      +.|+|+|+|||||||+++.|++.+++.+++.|++++...  +....+.+.   ..+..........++.. +..  ...+
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~--g~~~~~~~~---~~g~~~~~~~~~~~~~~-l~~--~~~~   76 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF--NQKVSEIFE---QKRENFFREQEQKMADF-FSS--CEKA   76 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH--TSCHHHHHH---HHCHHHHHHHHHHHHHH-HTT--CCSE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc--CCCHHHHHH---HcCHHHHHHHHHHHHHH-HHc--cCCE
Confidence            369999999999999999999999999999998877542  222222111   11111111111222332 222  3345


Q ss_pred             EEe-CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc-CCCCCCc-HHHHHHHHHHHhhcchhHHHHHHhcC
Q 028025          102 LID-GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-QGREDDN-VETIRKRFKVFLESSLPVVQYYEAKG  178 (215)
Q Consensus       102 iid-g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (215)
                      +++ |...... .. +..     .+.+|||++|++++.+|+.+|. ..++... .+.+.+.+...       ..+|....
T Consensus        77 vi~~g~~~~~~-~~-l~~-----~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r-------~~~y~~~~  142 (175)
T 1via_A           77 CIATGGGFVNV-SN-LEK-----AGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNER-------LSKYEQKA  142 (175)
T ss_dssp             EEECCTTGGGS-TT-GGG-----GCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHH-------HHHHHHHC
T ss_pred             EEECCCCEehh-hH-Hhc-----CCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHH-------HHHHHhcC
Confidence            555 5332211 11 222     3579999999999999997762 2333332 33333322211       12243322


Q ss_pred             cEEEEcCC-CCHHHHHHHHHHhhCC
Q 028025          179 KVRKIDAA-KPVAEVFDAVKAVFTP  202 (215)
Q Consensus       179 ~~~~id~~-~~~~e~~~~i~~~l~~  202 (215)
                       .++||++ .+++++++.|...+..
T Consensus       143 -~~~Idt~~~~~eev~~~I~~~l~~  166 (175)
T 1via_A          143 -NFILNIENKNIDELLSEIKKVIKE  166 (175)
T ss_dssp             -SEEEECTTCCHHHHHHHHHHHHC-
T ss_pred             -CEEEECCCCCHHHHHHHHHHHHHh
Confidence             4777776 7999999999998863

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.69  E-value=4.8e-16  Score=119.64  Aligned_cols=141  Identities=19%  Similarity=0.254  Sum_probs=90.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-cCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGN   98 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   98 (215)
                      |.+|+|+|+|||||||+++.|++++ ++.+++.| .++..+..... +.. ..+...............+...+.. ..+
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g   78 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDSV   78 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence            5789999999999999999999985 89999997 55555433111 000 0000000000011223344444421 237


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhc
Q 028025           99 DKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES  166 (215)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~  166 (215)
                      ..+|+|+++.....+..+..+  ....+..+|||++|.+++.+|+.+|  +......+.+.+++..|...
T Consensus        79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~e~i~~~~~~~~~~  146 (301)
T 1ltq_A           79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMREY  146 (301)
T ss_dssp             CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHC--GGGCCCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhc--cCCCCCHHHHHHHHHHHhcc
Confidence            899999988776666555532  2233457999999999999999988  43445567777777776543

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.69  E-value=2.6e-16  Score=110.97  Aligned_cols=155  Identities=15%  Similarity=0.188  Sum_probs=87.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCe-
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-  100 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  100 (215)
                      ..|+|+|+|||||||+++.|++++|+.+++.|++.+...  +....+.+.   ..+...........+.....  .+.. 
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~--g~~~~~~~~---~~g~~~~~~~~~~~l~~~~~--~~~~~   80 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV--GLSVREIFE---ELGEDNFRMFEKNLIDELKT--LKTPH   80 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHHHHHH---HTCHHHHHHHHHHHHHHHHT--CSSCC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh--CCCHHHHHH---HhCHHHHHHHHHHHHHHHHh--cCCCE
Confidence            479999999999999999999999999999999887653  222222111   11211111122223333221  1333 


Q ss_pred             EEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc-CCCCCCc-HHHHHHHHHHHhhcchhHHHHHHh
Q 028025          101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-QGREDDN-VETIRKRFKVFLESSLPVVQYYEA  176 (215)
Q Consensus       101 ~iidg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  176 (215)
                      ++..|  ++.. ..   +     ..++.+|||++|++++.+|+.+|. .+++... .+.+.+.+..    .   ...|..
T Consensus        81 Vi~~g~g~~~~-~~---l-----~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~----r---~~~~~~  144 (168)
T 1zuh_A           81 VISTGGGIVMH-EN---L-----KGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEK----R---QALYEK  144 (168)
T ss_dssp             EEECCGGGGGC-GG---G-----TTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHH----H---HHHHHH
T ss_pred             EEECCCCEech-hH---H-----hcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHH----H---HHHHHH
Confidence            33323  2222 11   1     236889999999999999998761 1222221 2333333222    1   122333


Q ss_pred             cCcEEEEcCCCCHHHHHHHHHHhh
Q 028025          177 KGKVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       177 ~~~~~~id~~~~~~e~~~~i~~~l  200 (215)
                      .. .+++|++.++++++++|...+
T Consensus       145 ~a-~~~Id~~~~~e~~~~~I~~~l  167 (168)
T 1zuh_A          145 NA-SFIIDARGGLNNSLKQVLQFI  167 (168)
T ss_dssp             TC-SEEEEGGGCHHHHHHHHHHC-
T ss_pred             HC-CEEEECCCCHHHHHHHHHHHh
Confidence            23 356677669999999998765

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.69  E-value=2.5e-15  Score=107.55  Aligned_cols=114  Identities=20%  Similarity=0.350  Sum_probs=73.0

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHH-hCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCC---CHHHHHHHHH
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH-FGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV---PSEVTIKLLQ   90 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~   90 (215)
                      ++++.+++.|+|+|+|||||||+++.|++. +|+.+++.|++.+.. ......++.+    .. ...   ........+.
T Consensus         4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-~~~~~~~~~~----~~-~~~~r~~~~~~~~~l~   77 (184)
T 1y63_A            4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDTEL----DT-HIIEEKDEDRLLDFME   77 (184)
T ss_dssp             --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC----------C-CCCCHHHHHHHHHHHH
T ss_pred             CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-hhhhhHHHHh----hh-cccCCCCHHHHHHHHH
Confidence            455667889999999999999999999999 799999999988874 1111121111    11 122   2222334444


Q ss_pred             HHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        91 ~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      ..+..  +.++++|.....     .+..   ..++.+|||++|.+++.+|+.+|
T Consensus        78 ~~~~~--~g~~vi~~~~~~-----~~~~---~~~~~vi~l~~~~e~~~~Rl~~R  121 (184)
T 1y63_A           78 PIMVS--RGNHVVDYHSSE-----LFPE---RWFHMVVVLHTSTEVLFERLTKR  121 (184)
T ss_dssp             HHHTS--SSEEEEECSCCT-----TSCG---GGCSEEEEEECCHHHHHHHHHHT
T ss_pred             HHHhc--cCCEEEeCchHh-----hhhh---ccCCEEEEEECCHHHHHHHHHhC
Confidence            44322  346778864321     1111   12578999999999999999988

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.68  E-value=2.4e-17  Score=123.84  Aligned_cols=178  Identities=20%  Similarity=0.253  Sum_probs=99.6

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCe----------EeeHHHHHHHHHHcCCCcHHHHHHHHHcCC-------
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT----------HLSAGDLLRAEIKSGSENGTMIQNMIKEGK-------   78 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   78 (215)
                      ....++++|+|+|++||||||+|+.|++.+|+.          +++.|++++..      ...... ....+.       
T Consensus        17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~------~~~~~~-~~~~g~~~f~~~~   89 (252)
T 1uj2_A           17 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL------TSEQKA-KALKGQFNFDHPD   89 (252)
T ss_dssp             ----CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC------CHHHHH-HHHTTCSCTTSGG
T ss_pred             ccCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc------Chhhhh-hhccCCCCCCCcc
Confidence            344578899999999999999999999999987          79999887521      000011 011111       


Q ss_pred             CCCHHHHHHHHHHHHH----------------------ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHH
Q 028025           79 IVPSEVTIKLLQKAME----------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE  136 (215)
Q Consensus        79 ~~~~~~~~~~~~~~~~----------------------~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~  136 (215)
                      ......+.+.+.....                      ......+|+||.+...+  ..+..    .++.+|||++++++
T Consensus        90 ~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~--~~~~~----~~d~vi~l~~~~e~  163 (252)
T 1uj2_A           90 AFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS--QEVRD----LFQMKLFVDTDADT  163 (252)
T ss_dssp             GBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS--HHHHH----HCSEEEEEECCHHH
T ss_pred             hhhHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccC--HHHHH----hcCeeEEEeCCHHH
Confidence            1112222333433321                      11356899999653211  12222    25789999999999


Q ss_pred             HHHHHhhcc-CCCCCCcHHHHHHHHHHHhh-cchhHHHHHHhcCcEEE---EcCCCCHHHHHHHHHHhhCCCcccc
Q 028025          137 MERRILNRN-QGREDDNVETIRKRFKVFLE-SSLPVVQYYEAKGKVRK---IDAAKPVAEVFDAVKAVFTPKDEKV  207 (215)
Q Consensus       137 ~~~R~~~r~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---id~~~~~~e~~~~i~~~l~~~~~~~  207 (215)
                      +.+|+..|. ..+ ....+.+.+++..... ........+.....+++   +|++.++++++++|...+.....+.
T Consensus       164 ~~~R~~~R~~~~r-g~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~~~~~~  238 (252)
T 1uj2_A          164 RLSRRVLRDISER-GRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNGGPSKR  238 (252)
T ss_dssp             HHHHHHHHHHHHS-CCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHhhh-CCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHccchhhh
Confidence            999998771 001 1345555555443211 00000001122233333   3777899999999999998765543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.68  E-value=1.3e-15  Score=112.18  Aligned_cols=173  Identities=18%  Similarity=0.270  Sum_probs=98.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH----HcCCCc--HHHHHHHHHcCCC-------------
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSEN--GTMIQNMIKEGKI-------------   79 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~-------------   79 (215)
                      .++++|+|.||+||||||+++.|++.+++.+++.|.+++...    ..+...  .+.+.........             
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l   86 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFL   86 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEE
Confidence            467899999999999999999999999999999999988753    223222  1223333221100             


Q ss_pred             ----CC-----HHH------------H---HHHHHHHHHccCC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCH
Q 028025           80 ----VP-----SEV------------T---IKLLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE  134 (215)
Q Consensus        80 ----~~-----~~~------------~---~~~~~~~~~~~~~-~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~  134 (215)
                          +.     .+.            +   ....++.+..  . .++|+||......        ..+..++.|||++|.
T Consensus        87 ~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~--~~~~~V~~GRd~gt~--------V~pda~lkifl~A~~  156 (233)
T 3r20_A           87 AGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLAT--EGGRVVVEGRDIGTV--------VLPDADVKIFLTASA  156 (233)
T ss_dssp             TTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHT--SSSCEEEEESSCCCC--------CCTTCSEEEEEECCH
T ss_pred             CCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHH--hcCcEEEecccceeE--------EcCCCCEEEEEECCH
Confidence                00     000            0   1111222222  3 6788888421100        223457899999999


Q ss_pred             HHHHHHHhhc-cCCCCCCcHHHHHHHHHHHhh-----cchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhCCCcc
Q 028025          135 EEMERRILNR-NQGREDDNVETIRKRFKVFLE-----SSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       135 e~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~~~~~  205 (215)
                      +++.+|..+. ...+.....+.+.+.+.....     .+.++    ......++||+ ..+++++++.|..+++....
T Consensus       157 e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl----~~~~dal~IDTs~l~iee~v~~I~~~i~~~~~  230 (233)
T 3r20_A          157 EERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPL----RAADDALVVDTSDMDQAQVIAHLLDLVTAQAG  230 (233)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCC----SCCTTSEEEECTTSCHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccccc----ccccCcEEEECCCCCHHHHHHHHHHHHHHhhc
Confidence            9999988753 111223344555544433221     11121    11123366666 77999999999999976543

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.68  E-value=2.6e-15  Score=108.80  Aligned_cols=169  Identities=14%  Similarity=0.178  Sum_probs=93.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcH-HHHHHHHHcCC-CC------------CH----
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG-TMIQNMIKEGK-IV------------PS----   82 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~------------~~----   82 (215)
                      .++|.|.|++||||||+++.||+++|+.+++ +++++..... .... +.+...-.... +.            ..    
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~-~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKD-GRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA   83 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHh-cCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence            4689999999999999999999999999999 7887664322 1111 11111111000 00            00    


Q ss_pred             HHHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028025           83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV  162 (215)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~  162 (215)
                      ....+.+++ +......++|++|..  -   ....  ......+.|||++|++++.+|+.++. +   ...+...+.+..
T Consensus        84 ~~~~~~i~~-la~~~~~~~Vi~Gr~--g---~~vl--~~~~~~~~V~L~A~~e~r~~R~~~~~-~---~~~~~~~~~i~~  151 (201)
T 3fdi_A           84 IRQFNFIRK-KANEEKESFVIVGRC--A---EEIL--SDNPNMISAFILGDKDTKTKRVMERE-G---VDEKTALNMMKK  151 (201)
T ss_dssp             HHHHHHHHH-HHHTSCCCEEEESTT--H---HHHT--TTCTTEEEEEEEECHHHHHHHHHHHH-T---CCHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHhhcCCCEEEEECC--c---chhc--CCCCCeEEEEEECCHHHHHHHHHHHh-C---CCHHHHHHHHHH
Confidence            112222222 220014567888742  1   1111  11123579999999999999998761 2   223444444443


Q ss_pred             HhhcchhHHHHH------HhcCcEEEEcC-CCCHHHHHHHHHHhhCCC
Q 028025          163 FLESSLPVVQYY------EAKGKVRKIDA-AKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       163 ~~~~~~~~~~~~------~~~~~~~~id~-~~~~~e~~~~i~~~l~~~  203 (215)
                      ......+.+..|      ......++||+ ..+++++++.|...++..
T Consensus       152 ~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~~  199 (201)
T 3fdi_A          152 MDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDSR  199 (201)
T ss_dssp             HHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHHh
Confidence            333222322222      11112355665 679999999999988643

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.67  E-value=2.5e-15  Score=112.72  Aligned_cols=176  Identities=16%  Similarity=0.177  Sum_probs=97.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH----HcCCCcH--HHHHHHHHcC---------------
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENG--TMIQNMIKEG---------------   77 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~----~~~~~~~--~~~~~~~~~~---------------   77 (215)
                      .++.+|+|.|++||||||+++.|++++|+.+++.|.+++...    ..+....  .........-               
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  104 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL  104 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence            356799999999999999999999999999999999997653    3322210  1111111100               


Q ss_pred             --CCCC-----------------HHHHHHHHHHHHHcc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHH
Q 028025           78 --KIVP-----------------SEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (215)
Q Consensus        78 --~~~~-----------------~~~~~~~~~~~~~~~-~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~  137 (215)
                        ..+.                 ...+.+.+....... .+.++|+||......        ..+..++.|||++|++++
T Consensus       105 ~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~--------v~~~~~~~ifl~A~~e~r  176 (252)
T 4e22_A          105 EGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTI--------VFPDAPVKIFLDASSQER  176 (252)
T ss_dssp             TTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCC--------CSTTCSEEEEEECCHHHH
T ss_pred             CCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceecee--------ecCCCCEEEEEECCHHHH
Confidence              0000                 011112222221222 256788887421100        123467899999999999


Q ss_pred             HHHHhhc-cCCCCCCcHHHHHHHHHHHhh--cchhHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhCCC
Q 028025          138 ERRILNR-NQGREDDNVETIRKRFKVFLE--SSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       138 ~~R~~~r-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~~~  203 (215)
                      .+|+.+. ...+.....+.+.+++.....  ..+. ...+......++||++ .+++++++.|..++...
T Consensus       177 ~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~-~~pl~~~~d~~~Idts~~~~eev~~~I~~~i~~~  245 (252)
T 4e22_A          177 AHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRS-VAPLVPAADALVLDSTSMSIEQVIEQALAYAQRI  245 (252)
T ss_dssp             HHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhcc-ccchhccCCeEEEECcCCCHHHHHHHHHHHHHHH
Confidence            9987652 001123344555444422111  1010 0111112234677774 49999999999888643

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.67  E-value=1.2e-15  Score=108.07  Aligned_cols=161  Identities=15%  Similarity=0.247  Sum_probs=87.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (215)
                      ++.+|+|+|+|||||||+++.|++.+++.+++.|++.+...  +......+...   +..........++.. +..  ..
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~~---g~~~~~~~~~~~l~~-l~~--~~   74 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDLE---GEEGFRDREEKVINE-LTE--KQ   74 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHHH---HHHHHHHHHHHHHHH-HHT--SS
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHHH---hHHHHHHHHHHHHHH-HHh--CC
Confidence            45689999999999999999999999999999988776542  22222211110   000000001122222 222  23


Q ss_pred             eEEEe---CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCC--CCCCc-HHHHHHHHHHHhhcchhHHH
Q 028025          100 KFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQG--REDDN-VETIRKRFKVFLESSLPVVQ  172 (215)
Q Consensus       100 ~~iid---g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~  172 (215)
                      .+++.   +.+........+..     .++++||+++++++.+|+.+| .+.  ...+. .+.+...+...    .+   
T Consensus        75 ~~v~~~~~~~~~~~~~~~~l~~-----~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r----~~---  142 (173)
T 1kag_A           75 GIVLATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANER----NP---  142 (173)
T ss_dssp             SEEEECCTTGGGSHHHHHHHHH-----HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHH----HH---
T ss_pred             CeEEECCCeEEecHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHH----HH---
Confidence            45553   22222223333333     467999999999999999876 111  11122 34333332221    12   


Q ss_pred             HHHhcCcEEEEcCC-CCHHHHHHHHHHhhC
Q 028025          173 YYEAKGKVRKIDAA-KPVAEVFDAVKAVFT  201 (215)
Q Consensus       173 ~~~~~~~~~~id~~-~~~~e~~~~i~~~l~  201 (215)
                      .|.... .++||++ .++++++++|...+.
T Consensus       143 ~~~~~a-~~~id~~~~~~~~~~~~i~~~l~  171 (173)
T 1kag_A          143 LYEEIA-DVTIRTDDQSAKVVANQIIHMLE  171 (173)
T ss_dssp             HHHHHC-SEEC-----CHHHHHHHHHHHHC
T ss_pred             HHHhhC-CEEEECCCCCHHHHHHHHHHHHH
Confidence            233333 4677775 799999999998875

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.66  E-value=4.8e-16  Score=113.30  Aligned_cols=170  Identities=18%  Similarity=0.169  Sum_probs=98.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--   95 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   95 (215)
                      .++.+|+|+|++||||||+++.|++.+ ++.+++.|+++... .........+.. ......+......+.+...+..  
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~~l~~~~   96 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPE-SEIETDKNGFLQ-YDVLEALNMEKMMSAISCWMESAR   96 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCG-GGSCBCTTSCBC-CSSGGGBCHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCH-hHhhccccCCCh-hHHHHHhHHHHHHHHHHHHHhCCC
Confidence            456789999999999999999999988 89999998876422 100000000000 0000001112222222222211  


Q ss_pred             -----------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc-HHHHHHH-HHH
Q 028025           96 -----------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN-VETIRKR-FKV  162 (215)
Q Consensus        96 -----------~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~-~~~~~~~-~~~  162 (215)
                                 .....+|+||++....     .. ....+|.++|++++++++.+|+..|  +...+. ...+..+ ...
T Consensus        97 ~~~~~~~~~~~~~~~~vi~eg~~~~~~-----~~-~~~~~d~~i~l~~~~~~~~~R~~~R--~~~~e~~~~~~~~~~~~~  168 (207)
T 2qt1_A           97 HSVVSTDQESAEEIPILIIEGFLLFNY-----KP-LDTIWNRSYFLTIPYEECKRRRSTR--VYQPPDSPGYFDGHVWPM  168 (207)
T ss_dssp             TSSCCC-----CCCCEEEEECTTCTTC-----GG-GTTTCSEEEEEECCHHHHHHHHHHS--CCSSCCCTTHHHHTHHHH
T ss_pred             CCCcCCCeeecCCCCEEEEeehHHcCc-----HH-HHHhcCeeEEEECCHHHHHHHHHHc--CCCccchHHHHHHHHhHH
Confidence                       1256899999653211     11 2345789999999999999999877  322221 1122211 111


Q ss_pred             HhhcchhHHHHHHhc-CcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          163 FLESSLPVVQYYEAK-GKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       163 ~~~~~~~~~~~~~~~-~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      |.    ...+.+... ..++.||++.++++++++|.+.+..
T Consensus       169 ~~----~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~  205 (207)
T 2qt1_A          169 YL----KYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ  205 (207)
T ss_dssp             HH----HHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred             HH----HHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence            21    122333333 4677899999999999999998864

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.66  E-value=4.1e-15  Score=110.94  Aligned_cols=169  Identities=17%  Similarity=0.199  Sum_probs=98.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (215)
                      ..+|+|+|++||||||+++.|++.+|+.+++.|++++... .+......+..   .+...........+....... ...
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~-~g~~i~~i~~~---~ge~~fr~~e~~~l~~l~~~~-~~~  122 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM-KGTSVAEIFEH---FGESVFREKETEALKKLSLMY-HQV  122 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS-TTSCHHHHHHH---HCHHHHHHHHHHHHHHHHHHC-SSE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh-cCccHHHHHHH---hCcHHHHHHHHHHHHHHHhhc-CCc
Confidence            6789999999999999999999999999999999887653 22222222211   122222222233444433321 244


Q ss_pred             EEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCC-------CCcHHHHHHHHHHHhhcchhH
Q 028025          101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGRE-------DDNVETIRKRFKVFLESSLPV  170 (215)
Q Consensus       101 ~iidg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~-------~~~~~~~~~~~~~~~~~~~~~  170 (215)
                      +|..|  .+........+ .     .+.+|||++|.+++.+|+.++ ...++       .+..+...+++........++
T Consensus       123 Via~GgG~v~~~~~~~~l-~-----~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~l  196 (250)
T 3nwj_A          123 VVSTGGGAVIRPINWKYM-H-----KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEA  196 (250)
T ss_dssp             EEECCGGGGGSHHHHHHH-T-----TSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCeecCHHHHHHH-h-----CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHH
Confidence            55554  33222222222 1     268999999999999999863 11121       111122334455444444444


Q ss_pred             HHHHHhcCcEEE-----------EcC-CCCHHHHHHHHHHhhCCCc
Q 028025          171 VQYYEAKGKVRK-----------IDA-AKPVAEVFDAVKAVFTPKD  204 (215)
Q Consensus       171 ~~~~~~~~~~~~-----------id~-~~~~~e~~~~i~~~l~~~~  204 (215)
                         |.... +++           +|+ ..+++++++.|...+....
T Consensus       197 ---Y~~ad-~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~  238 (250)
T 3nwj_A          197 ---YTKAS-ARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYL  238 (250)
T ss_dssp             ---HTTSS-EEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred             ---HhhCC-EEEEecccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence               54433 333           254 6799999999998886543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.65  E-value=1.6e-16  Score=113.37  Aligned_cols=109  Identities=18%  Similarity=0.215  Sum_probs=70.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (215)
                      .++.+|+|+|+|||||||+++.|++.+++.+++.|++++... .....+...     .........+...+...+..  +
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--g   80 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQ-LYDGYDEEY-----DCPILDEDRVVDELDNQMRE--G   80 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT-CEEEEETTT-----TEEEECHHHHHHHHHHHHHH--C
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcc-hhhhhhhhh-----cCccCChHHHHHHHHHHHhc--C
Confidence            456789999999999999999999999999999999877651 100010000     00111223334444444443  3


Q ss_pred             CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                       ++++|.......        ....++.+|||++|++++.+|+.+|
T Consensus        81 -~~vv~~~~~~~~--------~~~~~~~vi~L~~~~e~l~~R~~~r  117 (180)
T 3iij_A           81 -GVIVDYHGCDFF--------PERWFHIVFVLRTDTNVLYERLETR  117 (180)
T ss_dssp             -CEEEECSCCTTS--------CGGGCSEEEEEECCHHHHHHHHHHT
T ss_pred             -CEEEEechhhhc--------chhcCCEEEEEECCHHHHHHHHHHc
Confidence             455675331110        0012678999999999999999988

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.64  E-value=1.1e-14  Score=105.77  Aligned_cols=172  Identities=16%  Similarity=0.190  Sum_probs=95.4

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHc---CC----CcHHHHHHHHHcCCCCCHH-----
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GS----ENGTMIQNMIKEGKIVPSE-----   83 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~-----   83 (215)
                      .+.++++|+|+|+|||||||+++.|++.++. ...+..+..|.....   +.    -..+.+......+.+....     
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANN   87 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCC
Confidence            4677889999999999999999999998842 111111111100000   00    0001111111112111100     


Q ss_pred             ---HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCC-CcEEEEEe-cCHHHHHHHHhhccCCCCCCcHHHHHH
Q 028025           84 ---VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIE-PEFVLFFD-CSEEEMERRILNRNQGREDDNVETIRK  158 (215)
Q Consensus        84 ---~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~-~~~~i~L~-~~~e~~~~R~~~r~~~~~~~~~~~~~~  158 (215)
                         .....+...+..  +..+|+|+.+   .....+.. .... ...+|||. +|.+++.+|+.+|  +.  +..+.+.+
T Consensus        88 ~~~~~~~~i~~~l~~--g~~vi~d~~~---~~~~~l~~-~~~~~~~~~i~l~~~s~e~l~~Rl~~R--~~--~~~~~i~~  157 (204)
T 2qor_A           88 FYGTLKSEYDLAVGE--GKICLFEMNI---NGVKQLKE-SKHIQDGIYIFVKPPSIDILLGRLKNR--NT--EKPEEINK  157 (204)
T ss_dssp             EEEEEHHHHHHHHHT--TCEEEEECCH---HHHHHHHH-CSSCSCCEEEEEECSCHHHHHHHHHTC--TT--SCHHHHHH
T ss_pred             eecCCHHHHHHHHHc--CCeEEEEECH---HHHHHHHH-hcCCCCeEEEEEcCCCHHHHHHHHHHc--CC--CCHHHHHH
Confidence               001234444432  7899999643   33344443 3321 23789998 9999999999987  43  35577777


Q ss_pred             HHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          159 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      |+........+.   +......+++| + ++++++++|...+...
T Consensus       158 rl~~~~~~~~~~---~~~~~d~vi~n-~-~~e~~~~~i~~~i~~~  197 (204)
T 2qor_A          158 RMQELTREMDEA---DKVGFNYFIVN-D-DLARTYAELREYLLGS  197 (204)
T ss_dssp             HHHHHHHHHHHH---HHHTCSEEEEC-S-SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh---hhccCcEEEEC-c-CHHHHHHHHHHHHHHH
Confidence            777654322110   33333455444 4 8999999999888643

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.63  E-value=1.3e-14  Score=107.78  Aligned_cols=171  Identities=20%  Similarity=0.271  Sum_probs=100.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHH----cCCCc--HHHHHHHH------------------
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSEN--GTMIQNMI------------------   74 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~----~~~~~--~~~~~~~~------------------   74 (215)
                      .++.+|+|+|++||||||+++.|++.+|+.+++.|++++....    .+...  ...+....                  
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~   93 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVF   93 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEe
Confidence            4567899999999999999999999999999999999987532    33321  11121111                  


Q ss_pred             HcCC----CCCHHHHH-------------HHHHHHHHc-cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHH
Q 028025           75 KEGK----IVPSEVTI-------------KLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE  136 (215)
Q Consensus        75 ~~~~----~~~~~~~~-------------~~~~~~~~~-~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~  136 (215)
                      ..|.    .+..+.+.             ..+...... ..+.++|+||......        ....++++|||++|+++
T Consensus        94 ~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~~--------~l~~~d~vi~L~a~~e~  165 (236)
T 1q3t_A           94 VGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTV--------VLPQAELKIFLVASVDE  165 (236)
T ss_dssp             ETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSSS--------SGGGCSEEEEEECCHHH
T ss_pred             ECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchhh--------hccCCCEEEEEECCHHH
Confidence            1121    11111111             112111111 1256888998753210        11235789999999999


Q ss_pred             HHHHH----hhccCCCCCCcHHHHHHHHHH--HhhcchhHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhC
Q 028025          137 MERRI----LNRNQGREDDNVETIRKRFKV--FLESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFT  201 (215)
Q Consensus       137 ~~~R~----~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~  201 (215)
                      +.+|+    ..|  +. ....+.+.+++..  +....+.+...+.. ...++||++ .++++++++|...+.
T Consensus       166 ~~~R~~~~~~~R--~~-~~~~e~~~~~i~~R~~~~~~~~~~p~~~~-~d~~vId~~~~s~eev~~~I~~~l~  233 (236)
T 1q3t_A          166 RAERRYKENIAK--GI-ETDLETLKKEIAARDYKDSHRETSPLKQA-EDAVYLDTTGLNIQEVVEKIKAEAE  233 (236)
T ss_dssp             HHHHHHHHHHHT--TC-CCCHHHHHHHHHHHHHHHTTCSSSCCSCC-TTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc--CC-CCCHHHHHHHHHHHhhhhhhccccccccc-CCEEEEcCCCCCHHHHHHHHHHHHH
Confidence            99997    344  43 2344555555442  11111111111221 234778886 599999999998874

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.63  E-value=1.3e-14  Score=103.03  Aligned_cols=164  Identities=14%  Similarity=0.116  Sum_probs=86.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEe--eHHHHHHHHHHcCCC-cHHHHHHHHHcCCCC-CH---HHH---HHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSGSE-NGTMIQNMIKEGKIV-PS---EVT---IKLL   89 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~---~~~---~~~~   89 (215)
                      ++++|+|+|+|||||||+++.|+++++..++  +.|++.... ..... ..... .+...+... ..   ...   ...+
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   79 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAM-PLKMQSAEGGI-EFDADGGVSIGPEFRALEGAWAEGV   79 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHS-CGGGGTSTTSE-EECTTSCEEECHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhc-chhhccchhhc-cccCCCccccchhHHHHHHHHHHHH
Confidence            3578999999999999999999999986555  476654322 11100 00000 000000000 00   011   1122


Q ss_pred             HHHHHccCCCeEEEeCCCC-CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcch
Q 028025           90 QKAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSL  168 (215)
Q Consensus        90 ~~~~~~~~~~~~iidg~~~-~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~  168 (215)
                      .....  .+..+|+|+... .......+.+.....+..+|||++|.+++.+|+.+|  +......  ....   +.    
T Consensus        80 ~~~~~--~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r--~~~~~~~--~~~~---~~----  146 (178)
T 1qhx_A           80 VAMAR--AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETAR--GDRVAGM--AAKQ---AY----  146 (178)
T ss_dssp             HHHHH--TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHT--SSSCTTH--HHHH---TT----
T ss_pred             HHHHh--cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhh--CCcccch--hhhh---ch----
Confidence            22222  267899998543 222223333312223446899999999999999988  2111111  1111   11    


Q ss_pred             hHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhC
Q 028025          169 PVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFT  201 (215)
Q Consensus       169 ~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~  201 (215)
                      .+.. +.  ...+++|+ ..+++++++.|...+.
T Consensus       147 ~~~~-~~--~~d~~idt~~~~~~~~~~~I~~~l~  177 (178)
T 1qhx_A          147 VVHE-GV--EYDVEVDTTHKESIECAWAIAAHVV  177 (178)
T ss_dssp             GGGT-TC--CCSEEEETTSSCHHHHHHHHHTTCC
T ss_pred             hhcc-CC--CCcEEEECCCCCHHHHHHHHHHHhc
Confidence            1111 11  12356666 4599999999988764

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.63  E-value=6.1e-14  Score=102.88  Aligned_cols=169  Identities=14%  Similarity=0.197  Sum_probs=94.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC----------------------
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG----------------------   77 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------   77 (215)
                      +.++|.|.|++||||||+++.||+++|+.+++ +++++.......-..+.+...-...                      
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~   91 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP   91 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC------------------------------------
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccccccc
Confidence            45799999999999999999999999999999 5766665444211111111111000                      


Q ss_pred             --CCCCHHHH----HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCC-cEEEEEecCHHHHHHHHhhccCCCCC
Q 028025           78 --KIVPSEVT----IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEP-EFVLFFDCSEEEMERRILNRNQGRED  150 (215)
Q Consensus        78 --~~~~~~~~----~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~-~~~i~L~~~~e~~~~R~~~r~~~~~~  150 (215)
                        ....++..    .+.+.+. ..  ..++|++|...  .  ..+.. ....+ .+.|||.+|.+++.+|+.++ .++  
T Consensus        92 ~~~~~~~~~~f~~~~~~i~~l-a~--~~~~Vi~Grgg--g--~vl~~-~~~~~~~~~VfL~A~~e~r~~Ri~~~-~~~--  160 (223)
T 3hdt_A           92 NDKLTSPENLFKFQSEVMREL-AE--SEPCIFVGRAA--G--YVLDQ-DEDIERLIRIFVYTDKVKKVQRVMEV-DCI--  160 (223)
T ss_dssp             ------HHHHHHHHHHHHHHH-HH--HSCEEEESTTH--H--HHHHH-CTTCCEEEEEEEECCHHHHHHHHHHH-HTC--
T ss_pred             ccccccHHHHHHHHHHHHHHH-Hh--CCCEEEEeCCc--c--hhccc-ccCCCCeEEEEEECCHHHHHHHHHHh-cCC--
Confidence              00001111    1222222 22  34677776431  1  11110 01123 57999999999999999876 122  


Q ss_pred             CcHHHHHHHHHHHhhcchhHHHHHH------hcCcEEEEcC-CCCHHHHHHHHHHhhC
Q 028025          151 DNVETIRKRFKVFLESSLPVVQYYE------AKGKVRKIDA-AKPVAEVFDAVKAVFT  201 (215)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~id~-~~~~~e~~~~i~~~l~  201 (215)
                       ..+...+.+........+.+..|-      .....++||+ ..+++++++.|...++
T Consensus       161 -~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~  217 (223)
T 3hdt_A          161 -DEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIR  217 (223)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHH
Confidence             234455555444443334433221      1113456666 5699999999998885

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.62  E-value=6e-15  Score=105.94  Aligned_cols=151  Identities=13%  Similarity=0.167  Sum_probs=90.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC----CCC-----------CHH-
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG----KIV-----------PSE-   83 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----------~~~-   83 (215)
                      ..++|+|+|++||||||+++.|++.+|+.+++.|++.++....  .. ..+...+...    ..+           ..+ 
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~--~~-~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~   87 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE--VK-EKLVELFGGSVLEDGKVNRKKLAGIVFESREN   87 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH--TH-HHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH--HH-HHHHHHhChhhcCCCCcCHHHHHHHHhCCHHH
Confidence            4678999999999999999999999999999999998887653  11 1111111000    000           000 


Q ss_pred             ------HHH----HHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028025           84 ------VTI----KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (215)
Q Consensus        84 ------~~~----~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~  153 (215)
                            ...    ..+...+... +..+++|+. ...+.  .+..    .+|.+||+++|+++..+|+...         
T Consensus        88 ~~~l~~i~hP~i~~~~~~~~~~~-~~~vv~d~p-ll~e~--~~~~----~~d~vi~v~a~~e~r~~Rli~~---------  150 (192)
T 2grj_A           88 LKKLELLVHPLMKKRVQEIINKT-SGLIVIEAA-LLKRM--GLDQ----LCDHVITVVASRETILKRNREA---------  150 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC-CEEEEEECT-TTTTT--TGGG----GCSEEEEEECCHHHHHHHCSSH---------
T ss_pred             HHHHHhhhCHHHHHHHHHHHHHc-CCEEEEEEe-ceeec--ChHH----hCCEEEEEECCHHHHHHHHHHh---------
Confidence                  111    1112222222 457888863 22222  1222    3678999999999999997211         


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                           ++..+...       ..... -++|+++.+++++.++|.+.+...
T Consensus       151 -----q~~~~~~~-------~~~~A-D~vI~n~~~~~~l~~~v~~~~~~l  187 (192)
T 2grj_A          151 -----DRRLKFQE-------DIVPQ-GIVVANNSTLEDLEKKVEEVMKLV  187 (192)
T ss_dssp             -----HHHHTTCT-------TCCCC-SEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             -----cCCchhhh-------HHhcC-CEEEECCCCHHHHHHHHHHHHHHH
Confidence                 11111110       11122 256777789999999998887544

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.61  E-value=2.7e-14  Score=102.23  Aligned_cols=164  Identities=16%  Similarity=0.174  Sum_probs=89.3

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHH--
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK--   87 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   87 (215)
                      .....++.+|+|+|++||||||+++.|++.++     +.+++.|. ++..+.....+...-.          ......  
T Consensus         7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~r----------~~~~~~~~   75 (186)
T 2yvu_A            7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW-ARTTVSEGAGFTREER----------LRHLKRIA   75 (186)
T ss_dssp             -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHTTTTTTCCCCHHHH----------HHHHHHHH
T ss_pred             ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH-HHHHHhhccCCChhhH----------HHHHHHHH
Confidence            34445688999999999999999999999985     34566644 3432221111110000          000011  


Q ss_pred             HHHHHHHccCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH-HHh
Q 028025           88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK-VFL  164 (215)
Q Consensus        88 ~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~-~~~  164 (215)
                      .+...+. ..+..+++|++.........+..+  ....|+.+|||++|++++.+|+..+           ...+.. ...
T Consensus        76 ~~~~~~~-~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~-----------~~~~~~~~~~  143 (186)
T 2yvu_A           76 WIARLLA-RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKG-----------LYKKALKGEL  143 (186)
T ss_dssp             HHHHHHH-TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHH-----------HHHHHHTTCC
T ss_pred             HHHHHHH-hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhh-----------hhhHHhhcch
Confidence            1112222 236778889865443333333221  3336789999999999999997432           000000 000


Q ss_pred             hcchhHHHHHHh-cCcEEEEcCC-CCHHHHHHHHHHhhC
Q 028025          165 ESSLPVVQYYEA-KGKVRKIDAA-KPVAEVFDAVKAVFT  201 (215)
Q Consensus       165 ~~~~~~~~~~~~-~~~~~~id~~-~~~~e~~~~i~~~l~  201 (215)
                      .........|.. ....++||++ .+++++++.|...+.
T Consensus       144 ~~~~~~~~~y~~~~~~~~~Id~~~~~~~ev~~~I~~~l~  182 (186)
T 2yvu_A          144 ENFTGITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVK  182 (186)
T ss_dssp             SSCHHHHSCCCCCSSCSEEEETTTSCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhcccCCCCCcEEEECCCCCHHHHHHHHHHHHH
Confidence            000001111221 1234778885 799999999988774

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.60  E-value=1.8e-14  Score=105.72  Aligned_cols=168  Identities=16%  Similarity=0.247  Sum_probs=97.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHH----HHcCCCcHHHHHHH-------H-----------HcC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGTMIQNM-------I-----------KEG   77 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~-------~-----------~~~   77 (215)
                      +|++|+|+|++||||||+++.|++.+|+.+++.|++++..    ...+.  ...+.+.       +           ..|
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g   79 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDN   79 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCC
Confidence            3578999999999999999999999999999999998864    22322  1111111       0           111


Q ss_pred             CCC----CHHHH-------------HHHHH---HHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHH
Q 028025           78 KIV----PSEVT-------------IKLLQ---KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (215)
Q Consensus        78 ~~~----~~~~~-------------~~~~~---~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~  137 (215)
                      ...    .....             .+.+.   ..+.  .+.++|+||...  ..     . ....++++|||++|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~--~~~~~vi~g~~~--~~-----~-~~~~~~~vi~l~a~~e~~  149 (219)
T 2h92_A           80 EDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELA--AEKGIVMDGRDI--GT-----V-VLPDADLKVYMIASVEER  149 (219)
T ss_dssp             EECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHH--TTCCEEEEESSC--CC-----C-CCTTCSEEEEEECCHHHH
T ss_pred             ccchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhc--cCCcEEEEcCCc--cc-----e-ecCCCCEEEEEECCHHHH
Confidence            111    00010             01111   1121  255788898421  10     1 233567899999999999


Q ss_pred             HHHHhhc--cCCCCCCcHHHHHHHHHHHh--hcchhHHHHHHhcCcEEEEcCC-CCHHHHHHHHHHhhC
Q 028025          138 ERRILNR--NQGREDDNVETIRKRFKVFL--ESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFT  201 (215)
Q Consensus       138 ~~R~~~r--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~id~~-~~~~e~~~~i~~~l~  201 (215)
                      .+|+.++  .++. ....+.+.+++..-.  +..+.+..+|.. ...++||++ .++++++++|...+.
T Consensus       150 ~~R~~~~~~~r~~-~~~~e~~~~~~~~r~~~d~~r~~~~~~~~-~d~~~Id~~~~~~ee~~~~I~~~l~  216 (219)
T 2h92_A          150 AERRYKDNQLRGI-ESNFEDLKRDIEARDQYDMNREISPLRKA-DDAVTLDTTGKSIEEVTDEILAMVS  216 (219)
T ss_dssp             HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHCSSSCSCCC-TTCEEEECTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCc-ccCHHHHHHHHHHHHHhhhhhhccccccC-CCeEEEECCCCCHHHHHHHHHHHHh
Confidence            9997532  1243 224566666654221  111111111222 334777776 599999999998875

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.59  E-value=1e-14  Score=110.08  Aligned_cols=78  Identities=14%  Similarity=0.296  Sum_probs=51.9

Q ss_pred             CCCcEEEEEecCHHHHHHHHhhccCCCCC---Cc---HHHHHHHHHHHhhc--chhHHHHHHhcCcEEEEcCCCCHHHHH
Q 028025          122 IEPEFVLFFDCSEEEMERRILNRNQGRED---DN---VETIRKRFKVFLES--SLPVVQYYEAKGKVRKIDAAKPVAEVF  193 (215)
Q Consensus       122 ~~~~~~i~L~~~~e~~~~R~~~r~~~~~~---~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~id~~~~~~e~~  193 (215)
                      ..||++|||++|++++.+|+.+|  +++.   ..   .+.+.+++..|...  .++.+..+.. ..+++||++.++++++
T Consensus       173 ~~pd~vi~L~~~~e~~~~Ri~~R--~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~  249 (263)
T 1p5z_B          173 LELDGIIYLQATPETCLHRIYLR--GRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKY  249 (263)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHH
T ss_pred             CCCCeEEEEECCHHHHHHHHHhc--CCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECCCCHHHHH
Confidence            47999999999999999999887  4331   11   23333344444321  1222222233 4588999999999999


Q ss_pred             HHHHHhhCC
Q 028025          194 DAVKAVFTP  202 (215)
Q Consensus       194 ~~i~~~l~~  202 (215)
                      +.|...+..
T Consensus       250 ~~I~~~l~~  258 (263)
T 1p5z_B          250 ESLVEKVKE  258 (263)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988753

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.58  E-value=1.3e-14  Score=110.70  Aligned_cols=123  Identities=15%  Similarity=0.192  Sum_probs=73.7

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh--CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC----CCCCHHHHHHHH
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG----KIVPSEVTIKLL   89 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~   89 (215)
                      .+..+|.+|+|+|+|||||||+++.|++.+  ++.+++.|. ++.....   +......+....    ...........+
T Consensus        28 ~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~-~R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v  103 (287)
T 1gvn_B           28 KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT-FKQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAII  103 (287)
T ss_dssp             CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH-HHTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH-hHHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHH
Confidence            345568999999999999999999999998  788888755 4422111   111111100000    000111223344


Q ss_pred             HHHHHccCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHH----HHHHhhc
Q 028025           90 QKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEM----ERRILNR  144 (215)
Q Consensus        90 ~~~~~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~----~~R~~~r  144 (215)
                      ...+..  +..+|+|+.+....+...+...  ....+..++++.+|++++    .+|+..|
T Consensus       104 ~~~l~~--g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R  162 (287)
T 1gvn_B          104 SRLSDQ--GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM  162 (287)
T ss_dssp             HHHHHH--TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhc--CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence            444433  7889999987665544333321  222233478999999999    8888766

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.58  E-value=7e-14  Score=112.02  Aligned_cols=103  Identities=22%  Similarity=0.286  Sum_probs=76.6

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (215)
                      +.+.++.+|+|+|+|||||||+++.|++.+++.+++.|++ +                       ........+...+..
T Consensus       253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~-----------------------~~~~~~~~~~~~l~~  308 (416)
T 3zvl_A          253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-G-----------------------SWQRCVSSCQAALRQ  308 (416)
T ss_dssp             SCCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-C-----------------------SHHHHHHHHHHHHHT
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-H-----------------------HHHHHHHHHHHHHhc
Confidence            3455688999999999999999999999999999998774 0                       011123344444443


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           96 SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                        +..+|+|+.......+..+..+  ....+..+|||+++.+++.+|+..|
T Consensus       309 --g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R  357 (416)
T 3zvl_A          309 --GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR  357 (416)
T ss_dssp             --TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred             --CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhh
Confidence              7789999987776665555442  2233456999999999999999998

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.56  E-value=1.9e-14  Score=105.12  Aligned_cols=164  Identities=13%  Similarity=0.159  Sum_probs=90.4

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC------CeEeeHHHHHHHHHHcCCCcH-HHHHHHHHcCCCCCHHHHHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLL   89 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~------~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   89 (215)
                      ...++.+|+|+|++||||||+++.|++.++      +.+++.+. ++..+.....+. ......+        ......+
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~-~r~~l~~~~~~~~~~r~~~~--------~~~~~~~   91 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN-IRFGLNKDLGFSEADRNENI--------RRIAEVA   91 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH-HTTTTTTTCCSSHHHHHHHH--------HHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH-HhhhhccccCCCHHHHHHHH--------HHHHHHH
Confidence            345678999999999999999999999886      77777544 333221111111 0000000        0011122


Q ss_pred             HHHHHccCCCeEEEeCCCCC-HHHHHHHHHh-c-------CCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 028025           90 QKAMEESGNDKFLIDGFPRN-EENRAAFEAV-T-------KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF  160 (215)
Q Consensus        90 ~~~~~~~~~~~~iidg~~~~-~~~~~~~~~~-~-------~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~  160 (215)
                      ...+.  .+..||+| +... ......+..+ .       ...|+++|||++|++++.+|+. |    +     .+.+.-
T Consensus        92 ~~~l~--~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~-r----~-----~~~~~r  158 (211)
T 1m7g_A           92 KLFAD--SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDP-K----G-----LYKKAR  158 (211)
T ss_dssp             HHHHH--TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCT-T----C-----HHHHHH
T ss_pred             HHHHH--CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhh-H----H-----HHHHHH
Confidence            23332  26788999 4332 2223333332 1       1257899999999999999951 1    0     000011


Q ss_pred             HHHhhcchhHHHHHHhc-CcEEEEcCCC-CHHHHHHHHHHhhCC
Q 028025          161 KVFLESSLPVVQYYEAK-GKVRKIDAAK-PVAEVFDAVKAVFTP  202 (215)
Q Consensus       161 ~~~~~~~~~~~~~~~~~-~~~~~id~~~-~~~e~~~~i~~~l~~  202 (215)
                      ..+......+...|... ...++||++. ++++++++|...+..
T Consensus       159 ~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~  202 (211)
T 1m7g_A          159 EGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT  202 (211)
T ss_dssp             HTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             hcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence            11111111122223321 2247888877 999999999988853

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.54  E-value=1.8e-14  Score=106.61  Aligned_cols=79  Identities=15%  Similarity=0.164  Sum_probs=40.9

Q ss_pred             CCCCcEEEEEecCHHHHHHHHhhccCCCCCCc--HHHHHHHHHHHhhcchhHHHHH--HhcCcEEEEcCCCCHHHHHHHH
Q 028025          121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDN--VETIRKRFKVFLESSLPVVQYY--EAKGKVRKIDAAKPVAEVFDAV  196 (215)
Q Consensus       121 ~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~~~e~~~~i  196 (215)
                      ...||++|||++|++++.+|+.+|  ++..+.  ...+.+++...+..+.   ..|  .....+++||++.++++++++|
T Consensus       144 ~~~pD~vi~Ld~~~e~~~~Ri~~R--~r~~e~~~~~~~~~rv~~~~~~~~---~~~~~~~~~~~~vId~~~~~eev~~~I  218 (230)
T 2vp4_A          144 HVQADLIIYLRTSPEVAYERIRQR--ARSEESCVPLKYLQELHELHEDWL---IHQRRPQSCKVLVLDADLNLENIGTEY  218 (230)
T ss_dssp             CCCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHH---TSCCSSCCCEEEEEECCC---------
T ss_pred             cCCCCEEEEEeCCHHHHHHHHHHc--CCcccccCcHHHHHHHHHHHHHHH---HHhcccCCCCEEEEECCCCHHHHHHHH
Confidence            578999999999999999999888  554332  1245555554433211   011  2344678999999999999999


Q ss_pred             HHhhCCCc
Q 028025          197 KAVFTPKD  204 (215)
Q Consensus       197 ~~~l~~~~  204 (215)
                      .+.+....
T Consensus       219 ~~~l~~~~  226 (230)
T 2vp4_A          219 QRSESSIF  226 (230)
T ss_dssp             --------
T ss_pred             HHHHHHHh
Confidence            99887654

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.50  E-value=6.5e-13  Score=94.41  Aligned_cols=160  Identities=16%  Similarity=0.167  Sum_probs=80.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---CCeEeeHH-HHHHHHHHcCCCcH-HHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAG-DLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLLQKAME   94 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~---~~~~i~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (215)
                      ++.+|+|+|++||||||+++.|++.+   |+.++..+ +.++..+....... ......+..         .......+.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~   74 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRR---------IAEVAKLFA   74 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHH---------HHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHH---------HHHHHHHHH
Confidence            56789999999999999999999988   87666332 33332211111110 000000000         111111122


Q ss_pred             ccCCCeEEEeCCCCCH----HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhH
Q 028025           95 ESGNDKFLIDGFPRNE----ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV  170 (215)
Q Consensus        95 ~~~~~~~iidg~~~~~----~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (215)
                      . .+. +++.++....    .....+.. ....|+.+|||++|++++.+|+.+|      ...+....++    .....+
T Consensus        75 ~-~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~e~~~~R~~~~------~~~~~~~~~~----~~~~~~  141 (179)
T 2pez_A           75 D-AGL-VCITSFISPYTQDRNNARQIHE-GASLPFFEVFVDAPLHVCEQRDVKG------LYKKARAGEI----KGFTGI  141 (179)
T ss_dssp             H-TTC-EEEEECCCCCHHHHHHHHHHHH-HTTCCEEEEEEECCHHHHHHHCTTS------HHHHHHTTSS----CSCBTT
T ss_pred             H-CCC-EEEEecCCcchHHHHHHHHHhh-ccCCCeEEEEEeCCHHHHHHHHhhh------hHHHHhcccc----cccccC
Confidence            2 243 4444443221    22222222 3346789999999999999997643      0000000000    000000


Q ss_pred             HHHHH--hcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          171 VQYYE--AKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       171 ~~~~~--~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      ...|.  ....+++.+++.++++++++|...+.
T Consensus       142 ~~~~~~~~~ad~vid~~~~~~~~~~~~i~~~l~  174 (179)
T 2pez_A          142 DSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQ  174 (179)
T ss_dssp             TBCCCCCSSCSEEEETTTSCHHHHHHHHHHHHH
T ss_pred             CccccCCCCCcEEEECCCCCHHHHHHHHHHHHH
Confidence            01111  12234444555699999999998875

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.50  E-value=6.3e-13  Score=96.21  Aligned_cols=157  Identities=16%  Similarity=0.159  Sum_probs=87.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh---CCe--EeeHHHHHHHHHHcCCCcH-HHHHHHHHcCCCCCHHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GYT--HLSAGDLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLLQK   91 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~---~~~--~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   91 (215)
                      ..++.+|+|.|++||||||+++.|+..+   |..  +++.+++.. .+....... +.....+.         ....+..
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~   91 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH-GLNRDLSFKAEDRAENIR---------RVGEVAK   91 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-TTTTTCCSSHHHHHHHHH---------HHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh-HhhcccCcChHHHHHHHH---------HHHHHHH
Confidence            3567899999999999999999999998   555  777765432 111111111 00000000         0111222


Q ss_pred             HHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh------hccCCCCCCcHHHHHHHHHHHhh
Q 028025           92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL------NRNQGREDDNVETIRKRFKVFLE  165 (215)
Q Consensus        92 ~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~------~r~~~~~~~~~~~~~~~~~~~~~  165 (215)
                      .+.. .+..++.+........+..+..+......+.|||++|.+++.+|+.      .|. +.... ...          
T Consensus        92 ~~~~-~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~-~~~~~-~~~----------  158 (200)
T 3uie_A           92 LFAD-AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARA-GKIKG-FTG----------  158 (200)
T ss_dssp             HHHH-TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHT-TSSCS-CBT----------
T ss_pred             HHHh-CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhc-CCCCC-CCC----------
Confidence            2222 2667776654444455555555222223457999999999999972      220 11000 000          


Q ss_pred             cchhHHHHHHhc-CcEEEEcCC--CCHHHHHHHHHHhhC
Q 028025          166 SSLPVVQYYEAK-GKVRKIDAA--KPVAEVFDAVKAVFT  201 (215)
Q Consensus       166 ~~~~~~~~~~~~-~~~~~id~~--~~~~e~~~~i~~~l~  201 (215)
                          +...|..+ ...++||++  .+++++++.|...+.
T Consensus       159 ----~~~~~~~~~~~~~~idt~~~~~~~e~v~~i~~~l~  193 (200)
T 3uie_A          159 ----IDDPYEPPLNCEISLGREGGTSPIEMAEKVVGYLD  193 (200)
T ss_dssp             ----TTBCCCCCSSCSEEECCSSCCCHHHHHHHHHHHHH
T ss_pred             ----CCCcCcCCCCCCEEEecCCCCCHHHHHHHHHHHHH
Confidence                00112221 234677774  599999999998885

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.48  E-value=1.9e-12  Score=92.15  Aligned_cols=165  Identities=15%  Similarity=0.216  Sum_probs=98.4

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC-CeEeeHHHHHHHHHHc---CC----CcHHHHHHHHHcCCCCCHHHH--------H
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKS---GS----ENGTMIQNMIKEGKIVPSEVT--------I   86 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~-~~~i~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~--------~   86 (215)
                      .|+|+||+|||||||++.|.+.+. ...++.....|....+   +.    -..+.+......+.++.....        .
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~   82 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV   82 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence            389999999999999999988763 2223322222221111   11    122455666666655432211        4


Q ss_pred             HHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCC-CCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhh
Q 028025           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE  165 (215)
Q Consensus        87 ~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~-~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~  165 (215)
                      ..+...+.+  |..+|+|..   ......+.. ... .+..++++..+.+++.+|+.+|  +.  +..+.+.+|+.....
T Consensus        83 ~~v~~~l~~--g~~vil~id---~~g~~~~k~-~~~~~~~~Ifi~pps~e~L~~RL~~R--g~--e~~e~i~~Rl~~a~~  152 (186)
T 1ex7_A           83 ASVKQVSKS--GKTCILDID---MQGVKSVKA-IPELNARFLFIAPPSVEDLKKRLEGR--GT--ETEESINKRLSAAQA  152 (186)
T ss_dssp             HHHHHHHHH--TSEEEEECC---HHHHHHHHT-CGGGCCEEEEEECSCHHHHHHHHHHH--CC--SCHHHHHHHHHHHHH
T ss_pred             ceeeehhhC--CCEEEecCC---HHHHHHHHH-hcccCceEEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHHHHHH
Confidence            556666655  789999953   334444443 222 4544555566789999999988  43  567888888876554


Q ss_pred             cchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          166 SSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       166 ~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      ...   .........+++|.  ++++.++++..+|..
T Consensus       153 e~~---~~~~~~fD~vIvNd--dle~a~~~l~~iI~a  184 (186)
T 1ex7_A          153 ELA---YAETGAHDKVIVND--DLDKAYKELKDFIFA  184 (186)
T ss_dssp             HHH---HHTTTCSSEEEECS--SHHHHHHHHHHHHTT
T ss_pred             HHh---hccccCCcEEEECc--CHHHHHHHHHHHHHh
Confidence            211   11111224556654  799999999988853

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=99.45  E-value=3.3e-13  Score=100.51  Aligned_cols=77  Identities=13%  Similarity=0.153  Sum_probs=47.6

Q ss_pred             CCCcEEEEEecCHHHHHHHHhhccCCCCCCc--HHHHHHHHHHHhhcc-----hhH-HHHHHhcCcEEEEcCCCCHHHHH
Q 028025          122 IEPEFVLFFDCSEEEMERRILNRNQGREDDN--VETIRKRFKVFLESS-----LPV-VQYYEAKGKVRKIDAAKPVAEVF  193 (215)
Q Consensus       122 ~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~--~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~id~~~~~~e~~  193 (215)
                      ..||++|||++|++++.+|+.+|  ++..+.  .....+++...+..+     .++ ...+ ....++++|++.+++++.
T Consensus       148 ~~pd~~i~l~~~~~~~~~R~~~R--~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~Id~~~~~~~v~  224 (241)
T 2ocp_A          148 ITLHGFIYLQASPQVCLKRLYQR--AREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLVLDVNDDFSEEV  224 (241)
T ss_dssp             HCCCEEEEEECCHHHHHHHHHHS--CCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEEEECCSCTTTCH
T ss_pred             cCCCEEEEEECCHHHHHHHHHhc--CCcccccCCHHHHHHHHHHHHHHHhhcccccccccc-CCCCEEEEECCCChhhCH
Confidence            37999999999999999999988  544333  123334443332211     000 0012 345689999988887766


Q ss_pred             HHHHHhhC
Q 028025          194 DAVKAVFT  201 (215)
Q Consensus       194 ~~i~~~l~  201 (215)
                      +.+...+.
T Consensus       225 ~~i~~i~~  232 (241)
T 2ocp_A          225 TKQEDLMR  232 (241)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655554

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.44  E-value=1.8e-11  Score=88.74  Aligned_cols=169  Identities=14%  Similarity=0.230  Sum_probs=87.8

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHH---HcCC----CcHHHHHHHHHcCCCCCH-------
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI---KSGS----ENGTMIQNMIKEGKIVPS-------   82 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~-------   82 (215)
                      .+.++.+|+|.||+||||||+++.|+..+....+...+..+...   ..+.    .....+......+.....       
T Consensus         3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (205)
T 3tr0_A            3 AMNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERH   82 (205)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEE
T ss_pred             cCCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeeccc
Confidence            45567899999999999999999999876422222111100000   0000    001111111111110000       


Q ss_pred             -HHHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028025           83 -EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK  161 (215)
Q Consensus        83 -~~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~  161 (215)
                       ......+...+..  +..+++|+.+   .....+.. ....+..+++..++++++.+|+.+|  ++  +..+.+.+|+.
T Consensus        83 ~~~~~~~i~~~l~~--g~~vi~d~~~---~~~~~~~~-~~~~~~~v~~~~~~~e~l~~Rl~~R--~~--~~~~~i~~rl~  152 (205)
T 3tr0_A           83 YGTEKDWVLRQLKA--GRDVLLEIDW---QGARQIRE-LFPPALSIFILPPSIEALRERLIKR--RQ--DDTAIIEQRLA  152 (205)
T ss_dssp             EEEEHHHHHHHHHT--TCEEEEECCH---HHHHHHHH-HCTTCEEEEEECSCHHHHHHHHHTC--TT--SCSSTHHHHHH
T ss_pred             ccchHHHHHHHHHc--CCeEEEEECH---HHHHHHHH-hCCCcEEEEEECcCHHHHHHHHHHh--CC--CCHHHHHHHHH
Confidence             0001233444433  6788999643   33334444 4555554444455799999999988  33  22344556665


Q ss_pred             HHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          162 VFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      .....    ..++ ....++++|+  +++++++++.+.+..
T Consensus       153 ~~~~~----~~~~-~~~d~vi~n~--~~~~~~~~l~~~i~~  186 (205)
T 3tr0_A          153 LAREE----MAHY-KEFDYLVVND--NFDQAVQNLIHIISA  186 (205)
T ss_dssp             HHHHH----HTTG-GGCSEEEECS--SHHHHHHHHHHHHHH
T ss_pred             HHHHH----Hhcc-cCCCEEEECC--CHHHHHHHHHHHHHH
Confidence            55332    1112 2334455544  899999999988853

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.44  E-value=1.7e-12  Score=107.79  Aligned_cols=161  Identities=16%  Similarity=0.204  Sum_probs=88.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---CCeEeeH-HHHHHHHHHcCCCcH-HHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSA-GDLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLLQKAME   94 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~---~~~~i~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (215)
                      ++++|+|+|+|||||||+++.|++.+   |+.++.. +|.++..+.....+. ..-...+.        .+.+.+...+ 
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r--------~i~eva~~~l-  121 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR--------RIAEVAKLFA-  121 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHH--------HHHHHHHHHH-
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHH--------HHHHHHHHHH-
Confidence            67899999999999999999999999   8766654 354544322211111 11111111        0112122222 


Q ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhH
Q 028025           95 ESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV  170 (215)
Q Consensus        95 ~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (215)
                      . .+..++.+...........+..+  ....++++|||++|++++.+|+.++  ...+..+        +..+..    .
T Consensus       122 ~-~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~--------~~~~~~----~  188 (630)
T 1x6v_B          122 D-AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGE--------IKGFTG----I  188 (630)
T ss_dssp             H-TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC------------CBT----T
T ss_pred             h-CCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhh--------HHHHHH----h
Confidence            2 26677777321111222222221  3445788999999999999998643  0011111        001111    1


Q ss_pred             HHHHHhc-CcEEEEcCC-CCHHHHHHHHHHhhCC
Q 028025          171 VQYYEAK-GKVRKIDAA-KPVAEVFDAVKAVFTP  202 (215)
Q Consensus       171 ~~~~~~~-~~~~~id~~-~~~~e~~~~i~~~l~~  202 (215)
                      ...|... ...++||++ .++++++++|...+..
T Consensus       189 ~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~  222 (630)
T 1x6v_B          189 DSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQE  222 (630)
T ss_dssp             TBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHH
T ss_pred             hhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHh
Confidence            1113211 123677775 6999999999988864

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.42  E-value=1.4e-12  Score=95.03  Aligned_cols=167  Identities=16%  Similarity=0.277  Sum_probs=87.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHH---cC----CCcHHHHHHHHHcCCCCCHH-------
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIK---SG----SENGTMIQNMIKEGKIVPSE-------   83 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~-------   83 (215)
                      .++.+|+|.||+||||||+++.|++.++- .........+....   .+    ......+...+..+.++...       
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y   85 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY   85 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence            45779999999999999999999998742 11111000000000   00    00112222222222211100       


Q ss_pred             -HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028025           84 -VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVETIRKRFK  161 (215)
Q Consensus        84 -~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~e~~~~R~~~r~~~~~~~~~~~~~~~~~  161 (215)
                       .....+...+..  +..+++|..   ......+.. ....+. +||+.. +.+++.+|+.+|  +.  +..+.+.+|+.
T Consensus        86 g~~~~~i~~~l~~--g~~vild~~---~~g~~~~~~-~~~~~~-~i~i~~ps~~~l~~Rl~~R--~~--~~~e~i~~Rl~  154 (208)
T 3tau_A           86 GTPLEYVEEKLAA--GVDIFLEIE---VQGAMQVRK-AMPEGI-FIFLTPPDLSELKNRIIGR--GT--ESMEVVEERME  154 (208)
T ss_dssp             EEEHHHHHHHHHT--TCCEEEECC---HHHHHHHHH-HCTTSE-EEEEECTTTTTSSCC-----------CCHHHHHHHH
T ss_pred             CCcHHHHHHHHHc--CCeEEEEee---HHHHHHHHH-hCCCeE-EEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHH
Confidence             002334444443  788999863   333444454 555554 555554 588999999987  32  34577888877


Q ss_pred             HHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          162 VFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      .....    ..++ ....++++|+  +++++++++..++...
T Consensus       155 ~~~~e----~~~~-~~~d~vivN~--~~~~~~~~l~~~i~~~  189 (208)
T 3tau_A          155 TAKKE----IEMM-ASYDYAVVND--VVANAVQKIKGIVETE  189 (208)
T ss_dssp             HHHHH----HHHG-GGSSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred             HHHHH----HHhh-ccCCEEEECc--CHHHHHHHHHHHHHHH
Confidence            65432    1222 2334556654  6999999999888643

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.40  E-value=2.6e-12  Score=96.32  Aligned_cols=118  Identities=17%  Similarity=0.200  Sum_probs=70.6

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC--CeEeeHHHHHHHHH------Hc--CCCcHHHHHHHHHcCCCCCHHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEI------KS--GSENGTMIQNMIKEGKIVPSEVTI   86 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~   86 (215)
                      ...+|.+|+|.|+|||||||+++.|++.++  +.+++.|. ++..+      ..  +....+.....       ......
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~-~r~~~~~~~~i~~~~g~~~~~~~~~~-------~~~~~~   99 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS-FRSQHPHYLELQQEYGKDSVEYTKDF-------AGKMVE   99 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG-GGTTSTTHHHHHTTCSSTTHHHHHHH-------HHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH-HHHhchhHHHHHHHcCchHHHHhhHH-------HHHHHH
Confidence            345688999999999999999999999987  55666654 43321      11  11111111100       011112


Q ss_pred             HHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        87 ~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      ..+...+.  .+..+|+|+++........+...  ....+..++++.+|++++.+|..+|
T Consensus       100 ~~~~~~~~--~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R  157 (253)
T 2p5t_B          100 SLVTKLSS--LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR  157 (253)
T ss_dssp             HHHHHHHH--TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred             HHHHHHHh--cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence            23333332  25689999988765444333321  1222234678899999999999888

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=99.40  E-value=1.6e-14  Score=105.60  Aligned_cols=168  Identities=15%  Similarity=0.196  Sum_probs=85.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeH-------------HHHHHHHHHcCC---CcHHHHHHHHHcCCCCCHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSA-------------GDLLRAEIKSGS---ENGTMIQNMIKEGKIVPSEVT   85 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~-------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   85 (215)
                      ++|+|+|++||||||+++.|++.++...++.             ++.++..+....   .........+......  .. 
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~--~~-   77 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRA--GA-   77 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHH--EE-
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHh--hh-
Confidence            4799999999999999999999985321111             223333221100   0000000000000000  00 


Q ss_pred             HHHHHHHHHccCCCeEEEeCCCCCHH--H------------HHHHHHh-----cCCCCcEEEEEecCHHHHHHHHhhccC
Q 028025           86 IKLLQKAMEESGNDKFLIDGFPRNEE--N------------RAAFEAV-----TKIEPEFVLFFDCSEEEMERRILNRNQ  146 (215)
Q Consensus        86 ~~~~~~~~~~~~~~~~iidg~~~~~~--~------------~~~~~~~-----~~~~~~~~i~L~~~~e~~~~R~~~r~~  146 (215)
                      ...+...+.  .+..+|+|+++....  +            ...+..+     ..+.||.+|||++|++++.+|+.+|..
T Consensus        78 ~~~i~~~l~--~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~  155 (214)
T 1gtv_A           78 VHTIQGLCR--GYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQ  155 (214)
T ss_dssp             HHHHHHEEE--EEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHhh--CCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccc
Confidence            011111111  267899999764320  0            1112221     124789999999999999999998811


Q ss_pred             ---CCCCC---cHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHH
Q 028025          147 ---GREDD---NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA  198 (215)
Q Consensus       147 ---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~  198 (215)
                         ++..+   ....+.+++...+..   +...+. ...+++||++.++++++++|..
T Consensus       156 ~~~~~~~d~~e~~~~~~~~~~~~~~~---~~~~~~-~~~~~vId~~~~~~~v~~~i~~  209 (214)
T 1gtv_A          156 RDPGRARDNYERDAELQQRTGAVYAE---LAAQGW-GGRWLVVGADVDPGRLAATLAP  209 (214)
T ss_dssp             EBBEEEEEEEEEEHHHHHHHHHHHHH---HHHEEE-EEEEEEEEEEEBHHHHHHHHC-
T ss_pred             cccccccccccccHHHHHHHHHHHHH---HHHhCC-CCCEEEEeCCCCHHHHHHHhcC
Confidence               11001   113444554332211   111010 1356889998899999888753

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.37  E-value=7.6e-12  Score=103.17  Aligned_cols=161  Identities=16%  Similarity=0.111  Sum_probs=89.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC-----eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (215)
                      .+++|+++|++||||||+++.|++.++.     .+++.| .++..+.....+...-....       .......+...+ 
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D-~ir~~l~~~~~f~~~er~~~-------l~~i~~~~~~~l-  441 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD-VVRTHLSRGLGFSKEDRITN-------ILRVGFVASEIV-  441 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH-HHHHHTCTTCCSSHHHHHHH-------HHHHHHHHHHHH-
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch-HhhhhhcccccccHHHHHHH-------HHHHHHHHHHHH-
Confidence            4689999999999999999999999863     677764 45554332222221100000       000111222222 


Q ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCc-EEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHH
Q 028025           95 ESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY  173 (215)
Q Consensus        95 ~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~-~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (215)
                      . .+..+|+|+.......+..+.. ....++ ++|||++|.+++.+|+.++   .   ........+..+.....+    
T Consensus       442 ~-~G~~VI~d~~~~~~~~r~~~~~-~l~~~d~~vV~L~~~~e~~~~Rl~r~---~---~~~~~~~~i~~~~~vr~~----  509 (546)
T 2gks_A          442 K-HNGVVICALVSPYRSARNQVRN-MMEEGKFIEVFVDAPVEVCEERDVKG---L---YKKAKEGLIKGFTGVDDP----  509 (546)
T ss_dssp             H-TTCEEEEECCCCCHHHHHHHHT-TSCTTCEEEEEEECCGGGHHHHCCSS---H---HHHC------CCBTTTBC----
T ss_pred             h-CCCEEEEEcCCCCHHHHHHHHH-HhhcCCEEEEEEeCCHHHHHHHhhcc---c---cccccHHHHHHHHhhhhc----
Confidence            2 2788999975443444444444 222356 7999999999999997522   0   000000111111111111    


Q ss_pred             HHh-cCcEEEEcCC-CCHHHHHHHHHHhhC
Q 028025          174 YEA-KGKVRKIDAA-KPVAEVFDAVKAVFT  201 (215)
Q Consensus       174 ~~~-~~~~~~id~~-~~~~e~~~~i~~~l~  201 (215)
                      |.. ....++||++ .++++++++|...+.
T Consensus       510 ~e~~~~adivIDts~~s~eev~~~I~~~L~  539 (546)
T 2gks_A          510 YEPPVAPEVRVDTTKLTPEESALKILEFLK  539 (546)
T ss_dssp             CCCCSSCSEEEETTTSCHHHHHHHHHHHHH
T ss_pred             cccccCCcEEEECCCCCHHHHHHHHHHHHH
Confidence            111 1124677774 799999999998875

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.35  E-value=3.7e-12  Score=104.56  Aligned_cols=153  Identities=16%  Similarity=0.245  Sum_probs=83.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCC-----eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHH--
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ--   90 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   90 (215)
                      ...+.+|+++|+|||||||+|+.|++.+++     .+++.|++.+.. .........+......+...........+.  
T Consensus        32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~-~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~  110 (520)
T 2axn_A           32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA-VKQYSSYNFFRPDNEEAMKVRKQCALAALRDV  110 (520)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh-ccCCccccccCcccHHHHHHHHHHHHHHHHHH
Confidence            346789999999999999999999999853     457888855443 332111100000000000000011111122  


Q ss_pred             -HHHHccCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecC-HHHHHHHHhhccCCCCC----C---cHHHHHHH
Q 028025           91 -KAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCS-EEEMERRILNRNQGRED----D---NVETIRKR  159 (215)
Q Consensus        91 -~~~~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~-~e~~~~R~~~r~~~~~~----~---~~~~~~~~  159 (215)
                       ..+....+..+|+|+.......+..+..+  ......++|++.|+ ++++.+|+..|...++.    +   ..+.+.+|
T Consensus       111 ~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~~~~R  190 (520)
T 2axn_A          111 KSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKR  190 (520)
T ss_dssp             HHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHHH
T ss_pred             HHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHHHHHH
Confidence             22222348899999988777666555442  11122346666676 67777888666212211    1   12355677


Q ss_pred             HHHHhhcchhHH
Q 028025          160 FKVFLESSLPVV  171 (215)
Q Consensus       160 ~~~~~~~~~~~~  171 (215)
                      +..|...+.++.
T Consensus       191 i~~y~~~Yepi~  202 (520)
T 2axn_A          191 ISCYEASYQPLD  202 (520)
T ss_dssp             HHHHHTTCCCCC
T ss_pred             HHhhhhhhcccC
Confidence            777777666653

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.31  E-value=2.9e-11  Score=100.18  Aligned_cols=163  Identities=15%  Similarity=0.146  Sum_probs=86.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC------CeEeeHHHHHHHHHHcCCCcHHHHH-HHHHcCCCCCHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGTMIQ-NMIKEGKIVPSEVTIKLLQK   91 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   91 (215)
                      .++++|+|+|+|||||||+|+.|++.++      +.+++.| .++..+.....+...-. ..+.        .....+..
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D-~ir~~l~~~~~f~~~er~~~i~--------ri~~v~~~  464 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD-TVRHELSSELGFTREDRHTNIQ--------RIAFVATE  464 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH-HHHHHTCTTCCCSHHHHHHHHH--------HHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH-HHHHHhccccCCChhHHHHHHH--------HHHHHHHH
Confidence            4578999999999999999999999986      3556654 45544322211111000 0000        01112222


Q ss_pred             HHHccCCCeEEEeCCCCCHHHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhH
Q 028025           92 AMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV  170 (215)
Q Consensus        92 ~~~~~~~~~~iidg~~~~~~~~~~~~~~-~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (215)
                       +.. .+..+|.+........+..+..+ ....+.++|||++|.+++.+|..++      .........+..+.....+ 
T Consensus       465 -~~~-~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~------l~~~~~~~~i~~~~~~r~~-  535 (573)
T 1m8p_A          465 -LTR-AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRG------IYAAARRGEIKGFTGVDDP-  535 (573)
T ss_dssp             -HHH-TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSC------HHHHHHTTSSSSCBTTTBC-
T ss_pred             -HHh-CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhccc------chhhhhHHHHHHHHhcccc-
Confidence             222 26677777432222333333331 1112458999999999999995321      0000000001111111111 


Q ss_pred             HHHHHh-cCcEEEEcCC-CCHHHHHHHHHHhhCC
Q 028025          171 VQYYEA-KGKVRKIDAA-KPVAEVFDAVKAVFTP  202 (215)
Q Consensus       171 ~~~~~~-~~~~~~id~~-~~~~e~~~~i~~~l~~  202 (215)
                         |.. ....++||++ .++++++++|...+..
T Consensus       536 ---~~~p~~~dl~IDts~~s~eevv~~Il~~l~~  566 (573)
T 1m8p_A          536 ---YETPEKADLVVDFSKQSVRSIVHEIILVLES  566 (573)
T ss_dssp             ---CCCCSSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred             ---ccccCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence               211 1234778875 5999999999988853

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.30  E-value=3e-12  Score=92.89  Aligned_cols=166  Identities=16%  Similarity=0.233  Sum_probs=68.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHHHHH---cCC----CcHHHHHHHHHcCCCCCHH-------
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIK---SGS----ENGTMIQNMIKEGKIVPSE-------   83 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~-------   83 (215)
                      .++.+|+|+|++||||||+++.|+..+ ....+..++..+....   .+.    .....+......+......       
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY   83 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence            356799999999999999999999877 2121111111110000   000    0111222222222211100       


Q ss_pred             -HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe-cCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028025           84 -VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNRNQGREDDNVETIRKRFK  161 (215)
Q Consensus        84 -~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~-~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~  161 (215)
                       .....+...+..  +..+|+|+.+..   ...+.. ..+.+ .++++. ++.+++.+|+.+|  +  .+..+.+.+++.
T Consensus        84 g~~~~~i~~~l~~--g~~vv~d~~~~~---~~~~~~-~~~~~-~~i~~~~~~~~~~~~Rl~~R--~--~~~~~~~~~rl~  152 (207)
T 2j41_A           84 GTPVQYVKDTMDE--GHDVFLEIEVEG---AKQVRK-KFPDA-LFIFLAPPSLEHLRERLVGR--G--TESDEKIQSRIN  152 (207)
T ss_dssp             EEEHHHHHHHHHT--TCEEEEECCGGG---HHHHHH-HCTTS-EEEEEECCC----------------------------
T ss_pred             CCCHHHHHHHHHc--CCeEEEEECHHH---HHHHHH-hcCCe-EEEEEECCCHHHHHHHHHhc--C--CCCHHHHHHHHH
Confidence             001233333433  678999975432   233333 22222 345544 5688999999877  3  233456666666


Q ss_pred             HHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          162 VFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      .+.....    ++. ...++++ ++ ++++++++|...+..
T Consensus       153 ~~~~~~~----~~~-~~d~vI~-n~-~~e~~~~~i~~~l~~  186 (207)
T 2j41_A          153 EARKEVE----MMN-LYDYVVV-ND-EVELAKNRIQCIVEA  186 (207)
T ss_dssp             ---CGGG----GGG-GCSEEEE-CS-SHHHHHHHHHHHHHH
T ss_pred             HHHHHHh----ccc-cCCEEEE-CC-CHHHHHHHHHHHHHH
Confidence            5543321    122 2334444 44 899999999988864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=99.26  E-value=3.3e-11  Score=91.94  Aligned_cols=38  Identities=21%  Similarity=0.327  Sum_probs=31.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR   57 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~   57 (215)
                      ++++|+|+|++||||||+++.|++.++     +.+++.|++++
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            567899999999999999999999887     78999988875

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.23  E-value=9.1e-11  Score=85.40  Aligned_cols=39  Identities=28%  Similarity=0.431  Sum_probs=32.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC--CeEeeHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLL   56 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~~~~~   56 (215)
                      ..++.+|+|.|++||||||+++.|+..++  +.+++.|.++
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~   43 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY   43 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence            34678999999999999999999999988  8888876654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.23  E-value=7.5e-11  Score=87.15  Aligned_cols=157  Identities=15%  Similarity=0.182  Sum_probs=69.1

Q ss_pred             cccCCCCCeEEEEEcCCCCChHHHHHHHH-HHhC----------------------CeEeeHHHHHHHHHHcCCCcHHHH
Q 028025           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIV-EHFG----------------------YTHLSAGDLLRAEIKSGSENGTMI   70 (215)
Q Consensus        14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La-~~~~----------------------~~~i~~~~~~~~~~~~~~~~~~~~   70 (215)
                      -++...++.+|+|+||+||||||+++.|+ ..+.                      +...+... +.             
T Consensus        20 ~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~-~~-------------   85 (231)
T 3lnc_A           20 GSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREE-FL-------------   85 (231)
T ss_dssp             --CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCHHH-HH-------------
T ss_pred             CCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecHHH-hh-------------
Confidence            34444567899999999999999999999 6552                      11222211 11             


Q ss_pred             HHHHHcCCCCC--------HHHHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcC-CCCcEEEEEecCHHHHHHHH
Q 028025           71 QNMIKEGKIVP--------SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK-IEPEFVLFFDCSEEEMERRI  141 (215)
Q Consensus        71 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~-~~~~~~i~L~~~~e~~~~R~  141 (215)
                       .....+....        .......+...+..  +..+++|..   ......+.. .. ..+..++.+.++.+++.+|+
T Consensus        86 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~vild~~---~~g~~~~~~-~~~~~~~~v~v~~~~~~~l~~Rl  158 (231)
T 3lnc_A           86 -RLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDK--GVSTLLVID---WQGAFKFME-MMREHVVSIFIMPPSMEELRRRL  158 (231)
T ss_dssp             -HHHHTTCEEEEEEETTEEEEEECTTHHHHHHH--TCEEEEECC---HHHHHHHHH-HSGGGEEEEEEECSCHHHHHHC-
T ss_pred             -hhhhcCceehhhhhccccCCCCHHHHHHHHHc--CCeEEEEcC---HHHHHHHHH-hcCCCeEEEEEECCcHHHHHHHH
Confidence             1111111100        00001112233332  567888832   333334443 33 33333444456889999999


Q ss_pred             hhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          142 LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       142 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      .+|  +  ....+.+.+++.......    . +.....++++| + +++++.+++...+..
T Consensus       159 ~~R--~--~~~~~~i~~rl~~~~~~~----~-~~~~~d~vI~n-~-~~e~~~~~l~~~i~~  208 (231)
T 3lnc_A          159 CGR--R--ADDSEVVEARLKGAAFEI----S-HCEAYDYVIVN-E-DIEETADRISNILRA  208 (231)
T ss_dssp             -----------------CHHHHHHHH----T-TGGGSSEEEEC-S-SHHHHHHHHHHHHHH
T ss_pred             HHc--C--CCCHHHHHHHHHHHHHHH----h-hhcCCeEEEEC-c-CHHHHHHHHHHHHHH
Confidence            877  3  234455666665443321    1 12223445554 4 799999999988864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.23  E-value=1.1e-10  Score=87.03  Aligned_cols=176  Identities=16%  Similarity=0.228  Sum_probs=89.5

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCe----------EeeHHHHHHHHHHcCCCcHHHHHHHHHc-C----CC
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT----------HLSAGDLLRAEIKSGSENGTMIQNMIKE-G----KI   79 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~   79 (215)
                      ++.-.++.+|.|+|++||||||+++.|+..+|..          +++.+.+++.     ....+........ .    ..
T Consensus        19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~-----l~~~~~~~~~~~~~~~~~~~~   93 (245)
T 2jeo_A           19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKV-----LTAEQKAKALKGQYNFDHPDA   93 (245)
T ss_dssp             ----CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCC-----CCHHHHHHHHTTCCCTTSGGG
T ss_pred             eccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccc-----cCHhHhhhhhccCCCCCCccc
Confidence            4555678899999999999999999999988854          5665543211     0011111000000 0    00


Q ss_pred             CCHHHHHHHHHHHH----------------------HccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHH
Q 028025           80 VPSEVTIKLLQKAM----------------------EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (215)
Q Consensus        80 ~~~~~~~~~~~~~~----------------------~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~  137 (215)
                      ...+...+.+....                      ...+...+|+|+......  ..+..    ..+..|++.++.+..
T Consensus        94 ~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~--~~l~~----~~~~~i~v~th~~~~  167 (245)
T 2jeo_A           94 FDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYS--QEIRD----MFHLRLFVDTDSDVR  167 (245)
T ss_dssp             BCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTS--HHHHT----TCSEEEEEECCHHHH
T ss_pred             ccHHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCcccccc--HHHHH----hcCeEEEEECCHHHH
Confidence            11111222222110                      011245889998332111  12222    147899999998777


Q ss_pred             HHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHH----HHhcCcEEE---EcCCCCHHHHHHHHHHhhCCCcc
Q 028025          138 ERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY----YEAKGKVRK---IDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       138 ~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                      ..|...|.. ..+...+.+.+++..   ...+-...    ......+++   +|++.+++++.++|...+.....
T Consensus       168 ~~r~~~r~~-~~G~~~e~~~~~~~~---~~~~~~~~~i~p~~~~aD~vi~~~~dn~~~~~~l~~~i~~~~~~~~~  238 (245)
T 2jeo_A          168 LSRRVLRDV-RRGRDLEQILTQYTT---FVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDIC  238 (245)
T ss_dssp             HHHHHHHHT-C---CHHHHHHHHHH---THHHHHHHHTGGGGGGCSEEEESSTTCHHHHHHHHHHHHHHHHTCC-
T ss_pred             HHHHHHHHH-HcCCCHHHHHHHHHH---hhhHhHHHhCCcchhcceEEEcCCCCccHHHHHHHHHHHHHHhcchh
Confidence            666655511 112345566555442   11111111    122334444   26777899999999988875443

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=99.17  E-value=1.1e-10  Score=84.43  Aligned_cols=116  Identities=19%  Similarity=0.200  Sum_probs=55.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh---CC--eEeeHHHHHHHHH---HcCCCcHHHHHHHHHcCCCCCHHHHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLRAEI---KSGSENGTMIQNMIKEGKIVPSEVTIKL   88 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~---~~--~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (215)
                      .+.++.+|+|+|++||||||+++.|+..+   +.  .+++.|.+.....   ..+...+..   ...  ..+....+.+.
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~---~~~--~~~d~~~l~~~   92 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFE---YYY--LQWDVEWLTHQ   92 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHH---HHH--TSSCHHHHHHH
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccC---CCc--cccCHHHHHHH
Confidence            35668899999999999999999999876   33  3344454432211   111111111   110  11111211111


Q ss_pred             HHHH-----------------------HHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           89 LQKA-----------------------MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        89 ~~~~-----------------------~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      +-..                       .....+..+|+||.......   +    ...+|.+||+++|.+++.+|+.+|
T Consensus        93 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~----~~~~d~~i~v~~~~~~~~~R~~~R  164 (201)
T 1rz3_A           93 LFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---W----RPFFDFVVYLDCPREIRFARENDQ  164 (201)
T ss_dssp             TGGGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---T----GGGCSEEEEECCC-----------
T ss_pred             HHHHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---H----HhhcCEEEEEeCCHHHHHHHHhcC
Confidence            1000                       01112678999985432111   1    123679999999999999999988

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=99.17  E-value=1.4e-10  Score=94.29  Aligned_cols=182  Identities=13%  Similarity=0.202  Sum_probs=94.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCC----CCHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI----VPSEVTIKL   88 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   88 (215)
                      ..++.+|+++|.|||||||+++.|++.++     ...++.+++.+. .........    .+.....    .........
T Consensus        36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~-~~g~~~~~~----ifd~~g~~~~r~re~~~~~~  110 (469)
T 1bif_A           36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD-MVKTYKSFE----FFLPDNEEGLKIRKQCALAA  110 (469)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHCSCCCGG----GGCTTCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh-hccCCCccc----ccCCCCHHHHHHHHHHHHHH
Confidence            45678999999999999999999999875     456667664443 332211000    0000000    000111111


Q ss_pred             ---HHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe---cCHHHHHHHHhhccCCCCC---CcH----HH
Q 028025           89 ---LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD---CSEEEMERRILNRNQGRED---DNV----ET  155 (215)
Q Consensus        89 ---~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~---~~~e~~~~R~~~r~~~~~~---~~~----~~  155 (215)
                         +...+....+.++|+|+.......+..|..........++||+   .+++.+.+|+..+...++.   ...    +.
T Consensus       111 l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~~~e~~~~~  190 (469)
T 1bif_A          111 LNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATED  190 (469)
T ss_dssp             HHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTTSCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccCCCHHHHHHH
Confidence               2344434458899999987777666666442100111356677   4577788887654212221   122    45


Q ss_pred             HHHHHHHHhhcchhHHHHH-HhcCcEEEEcCCC------CHHHHHHHHHHhhCCCc
Q 028025          156 IRKRFKVFLESSLPVVQYY-EAKGKVRKIDAAK------PVAEVFDAVKAVFTPKD  204 (215)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~id~~~------~~~e~~~~i~~~l~~~~  204 (215)
                      +.+|+..|.....++.... .+...+.++|...      ...-+...|.-++.+..
T Consensus       191 ~~~R~~~y~~~ye~l~~~~~~~~~~ik~~d~~~~~~~~~~~g~~~~~~~~~l~n~~  246 (469)
T 1bif_A          191 FMRRIECYENSYESLDEEQDRDLSYIKIMDVGQSYVVNRVADHIQSRIVYYLMNIH  246 (469)
T ss_dssp             HHHHHHHHHTTCCCCCTTTTTTSCEEEEETTTTEEEEECCCSHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhccEeEECCccccCCcceEEEEcCccceeccCccccchhhHHHHHhccC
Confidence            5566666666665553210 1122344455321      12334556666665543

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.16  E-value=1.8e-09  Score=77.15  Aligned_cols=114  Identities=14%  Similarity=0.125  Sum_probs=63.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH--ccC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME--ESG   97 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   97 (215)
                      +.+|+|.|++||||||+++.|++.++. .+++.+++.... ..+......        ...+.....+.+.....  ...
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~   72 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGYRPPWE--------SDELLALTWKNITDLTVNFLLA   72 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTCCCGGG--------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-ccccccCcc--------chhHHHHHHHHHHHHHHHHHhc
Confidence            357999999999999999999988765 677776653321 111000000        00000011111111111  112


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHh---cCCC-CcEEEEEecCHHHHHHHHhhc
Q 028025           98 NDKFLIDGFPRNEENRAAFEAV---TKIE-PEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~---~~~~-~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      +..+++|+.. .......+..+   .... ...+++|.++++.+.+|...|
T Consensus        73 ~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r  122 (189)
T 2bdt_A           73 QNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALR  122 (189)
T ss_dssp             TCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTS
T ss_pred             CCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhc
Confidence            5678999853 23222333321   1332 234788999999999999887

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=99.16  E-value=3.5e-10  Score=80.89  Aligned_cols=162  Identities=12%  Similarity=0.098  Sum_probs=91.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHH-c-CCCcHHHHHHHHHcCCCCC--HHHHH---HH-
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIK-S-GSENGTMIQNMIKEGKIVP--SEVTI---KL-   88 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~--~~~~~---~~-   88 (215)
                      .+.+|+|+|.|||||+|+|..|.+.+|   +.+++.+|.++.... . +-...+.+    .......  ...+.   +. 
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l----~~~~ykE~~R~~m~~~g~~~   85 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLL----DTSTYKEAFRKDMIRWGEEK   85 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-----------CCSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhc----chhhhHHHHHHHHHHHHHHH
Confidence            456899999999999999999988884   778999999985332 2 22222211    0000000  01111   00 


Q ss_pred             --------HHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 028025           89 --------LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF  160 (215)
Q Consensus        89 --------~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~  160 (215)
                              ....+.......+|+||. +....+..+.+ .....-.+|.+.+++++..+|...+..+.. +.. .     
T Consensus        86 R~~d~~~~~~~~~~~~~~~~vII~dv-R~~~Ev~~fr~-~~g~~~~iirI~as~~~R~~Rg~~~~~~~D-d~e-s-----  156 (202)
T 3ch4_B           86 RQADPGFFCRKIVEGISQPIWLVSDT-RRVSDIQWFRE-AYGAVTQTVRVVALEQSRQQRGWVFTPGVD-DAE-S-----  156 (202)
T ss_dssp             HHHCTTTTHHHHSBTCCCSEEEECCC-CSHHHHHHHHH-HHGGGEEEEEEEECHHHHHHTTCCCCTTTT-TSH-H-----
T ss_pred             HhcCchHHHHHHHHhcCCCcEEEeCC-CCHHHHHHHHH-hCCCcEEEEEEECCHHHHHHHhhhcccccc-ccc-c-----
Confidence                    111111222458999986 55666777776 433323589999999999999543311222 111 0     


Q ss_pred             HHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          161 KVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                       .+     . +..+ .... ++|+++++.+++.+++..++..+
T Consensus       157 -E~-----g-L~~~-~~~D-~vI~Ndgt~eel~~~v~~ll~~~  190 (202)
T 3ch4_B          157 -EC-----G-LDNF-GDFD-WVIENHGVEQRLEEQLENLIEFI  190 (202)
T ss_dssp             -HH-----T-TTTC-CCCS-EEEEECSCHHHHHHHHHHHHHHH
T ss_pred             -cc-----C-CCCC-CcCC-EEEEeCCCHHHHHHHHHHHHHHH
Confidence             01     1 1111 1233 44445569999888887766544

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=99.15  E-value=3.5e-10  Score=87.35  Aligned_cols=29  Identities=17%  Similarity=0.103  Sum_probs=26.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      .++++|+|+|+.||||||+++.|++.++.
T Consensus         5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            5 VTIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            34689999999999999999999999864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.14  E-value=1.5e-10  Score=86.66  Aligned_cols=120  Identities=14%  Similarity=0.170  Sum_probs=66.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHH-HHH--cCCCcHHHHHH----HHHcC----CCCCHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-EIK--SGSENGTMIQN----MIKEG----KIVPSEVTIKLLQ   90 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~-~~~--~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~   90 (215)
                      ++|+|+|+|||||||+|+.|++.+++.+++.|++... .+.  ...+..+....    .+...    .............
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   81 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI   81 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence            4799999999999999999999999999999875311 000  00110000000    00000    0122222333333


Q ss_pred             HHHHc-cCCCeEEEeCCCCCHHHHHHHHHhc----CCCCcEEEEEecCH-HHHHHHHhhc
Q 028025           91 KAMEE-SGNDKFLIDGFPRNEENRAAFEAVT----KIEPEFVLFFDCSE-EEMERRILNR  144 (215)
Q Consensus        91 ~~~~~-~~~~~~iidg~~~~~~~~~~~~~~~----~~~~~~~i~L~~~~-e~~~~R~~~r  144 (215)
                      ..+.. ..+..+|++|-.  ......+.. .    ......++||++|. +++.+|+.+|
T Consensus        82 ~~i~~~~~g~~vIl~gg~--~~~~~~~~~-~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R  138 (253)
T 2ze6_A           82 FEVDWRKSEEGLILEGGS--ISLLNCMAK-SPFWRSGFQWHVKRLRLGDSDAFLTRAKQR  138 (253)
T ss_dssp             HHHHTTTTSSEEEEEECC--HHHHHHHHH-CTTTTSSCEEEEEECCCCCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCeEEeccH--HHHHHHHHh-cccccccCceEEEEecchhHHHHHHHHHHH
Confidence            33311 126667776532  122233332 2    11112589999997 9999999998

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=99.10  E-value=1.2e-09  Score=78.26  Aligned_cols=167  Identities=11%  Similarity=0.210  Sum_probs=83.6

Q ss_pred             ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhC-CeEeeHHHHHHHHHH---cCC----CcHHHHHHHHHcCCCCCHH-
Q 028025           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIK---SGS----ENGTMIQNMIKEGKIVPSE-   83 (215)
Q Consensus        13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~-~~~i~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~-   83 (215)
                      ..++++.++.+|+|.||+|||||||++.|.+.+. ....+.....|....   .+.    ...+.+...+..+.++... 
T Consensus        11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~   90 (197)
T 3ney_A           11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGS   90 (197)
T ss_dssp             -----CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEE
T ss_pred             cccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhh
Confidence            4456667788999999999999999999998764 111111000000000   000    0112333333333322110 


Q ss_pred             -------HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHH
Q 028025           84 -------VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETI  156 (215)
Q Consensus        84 -------~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~  156 (215)
                             .....++..+.+  +..+++|..+   .....+.. ..+.| ++||+..|.-       .|    ..+..+.+
T Consensus        91 ~~~n~YGt~~~~v~~~l~~--G~~vildid~---qg~~~~~~-~~~~~-~~Ifi~Pps~-------~~----~~e~~~~i  152 (197)
T 3ney_A           91 YQGNMFGTKFETVHQIHKQ--NKIAILDIEP---QTLKIVRT-AELSP-FIVFIAPTDQ-------GT----QTEALQQL  152 (197)
T ss_dssp             ETTEEEEEEHHHHHHHHHT--TCEEEEECCG---GGHHHHCS-TTTCE-EEEEEEECCB-------SS----CCHHHHHH
T ss_pred             hhceecccchhhHHHHHhc--CCeEEEEECH---HHHHHHHh-cCCCc-eEEEEeCCCc-------cc----cchHHHHH
Confidence                   013345555554  8899999643   33333333 33444 5777775431       11    22223444


Q ss_pred             HHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025          157 RKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK  206 (215)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~  206 (215)
                      .+|.....       ..+......+++|+  ++++.++++..++.....+
T Consensus       153 ~~r~~~~~-------~~~~~~fd~vivNd--~l~~a~~~l~~ii~~~~~~  193 (197)
T 3ney_A          153 QKDSEAIR-------SQYAHYFDLSLVNN--GVDETLKKLQEAFDQACSS  193 (197)
T ss_dssp             HHHHHHHH-------HHHGGGCSEEEEES--CHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHH-------HhhccCCCEEEECC--CHHHHHHHHHHHHHHccCC
Confidence            44432221       11333334666665  6999999999988655443

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.04  E-value=1e-09  Score=78.47  Aligned_cols=162  Identities=17%  Similarity=0.259  Sum_probs=83.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC--eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHH--HH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA--ME   94 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   94 (215)
                      .++.+|+|.|+|||||||+++.|+..++.  .+++.+++.... ......+...+.. .     +.....+.+...  ..
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~-~-----~~~~v~~~l~~~~~~~   79 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDPWLPQSH-Q-----QNRMIMQIAADVAGRY   79 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCTTSSSHH-H-----HHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccCCccchh-h-----hhHHHHHHHHHHHHHH
Confidence            45789999999999999999999998654  366666654321 1110000000000 0     011112222111  11


Q ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC-cHHHHHHHHHHHhhcchhHHHH
Q 028025           95 ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD-NVETIRKRFKVFLESSLPVVQY  173 (215)
Q Consensus        95 ~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  173 (215)
                      ...+..+++|+..... ....+.. .. .+...+++.++.+++..|...|  +++.. .++.....+..+    .++.. 
T Consensus        80 ~~~~~~~~~~~~~~~~-~l~~~~~-~~-~~~~~ls~~~~~~v~~~R~~~r--~~~~lld~~~~~~~~~~~----~~l~~-  149 (191)
T 1zp6_A           80 AKEGYFVILDGVVRPD-WLPAFTA-LA-RPLHYIVLRTTAAEAIERCLDR--GGDSLSDPLVVADLHSQF----ADLGA-  149 (191)
T ss_dssp             HHTSCEEEECSCCCTT-TTHHHHT-TC-SCEEEEEEECCHHHHHHHHHTT--CTTSCCCHHHHHHHHHHT----TCCGG-
T ss_pred             hccCCeEEEeccCcHH-HHHHHHh-cC-CCeEEEEecCCHHHHHHHHHhc--CCCccCCHHHHHHHHHHH----hccCc-
Confidence            1225667888754321 2223332 12 2235799999999999999987  33221 233222222222    12211 


Q ss_pred             HHhcCcEEEEcC-CCCHHHHHHHHHHhhC
Q 028025          174 YEAKGKVRKIDA-AKPVAEVFDAVKAVFT  201 (215)
Q Consensus       174 ~~~~~~~~~id~-~~~~~e~~~~i~~~l~  201 (215)
                      +   .. +++|+ +.+++++++.|...+.
T Consensus       150 ~---~~-~~i~t~~~~~~~~~~~i~~~l~  174 (191)
T 1zp6_A          150 F---EH-HVLPVSGKDTDQALQSAINALQ  174 (191)
T ss_dssp             G---GG-GEEECTTCCTTTTTTTTHHHHH
T ss_pred             c---cc-cEEECCCCCHHHHHHHHHHHHH
Confidence            1   12 34444 4688888888877764

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=99.03  E-value=1.2e-09  Score=84.41  Aligned_cols=30  Identities=17%  Similarity=0.072  Sum_probs=26.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHH-HHHHHHhCC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQC-ANIVEHFGY   47 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla-~~La~~~~~   47 (215)
                      +.++++|+|.|+.||||||++ +.|++.++.
T Consensus         9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~   39 (341)
T 1osn_A            9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAIT   39 (341)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             cCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            345789999999999999999 999998863

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=99.02  E-value=1.9e-09  Score=88.89  Aligned_cols=163  Identities=14%  Similarity=0.108  Sum_probs=69.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC------CeEeeHHHHHHHHHHcCCCcHHH-HHHHHHcCCCCCHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGTM-IQNMIKEGKIVPSEVTIKLLQK   91 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~------~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   91 (215)
                      .++.+|+|+|++||||||+++.|+..++      +.+++.+++.. .+.....+... ......        . ...+.+
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~-~l~~~l~f~~~~r~~~~r--------~-i~~v~q  436 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR-HLSSELGFSKAHRDVNVR--------R-IGFVAS  436 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH-HTTSSCCCSHHHHHHHHH--------H-HHHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH-hhccccCCCHHHHHHHHH--------H-HHHHHH
Confidence            3578999999999999999999999984      33566655432 21111111110 000000        0 111222


Q ss_pred             HHHccCCCeEEEeCCCCCHHHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhH
Q 028025           92 AMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV  170 (215)
Q Consensus        92 ~~~~~~~~~~iidg~~~~~~~~~~~~~~-~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (215)
                      .+... +..++..+............++ ......+.|||++|.+++.+|..+.   ......   ...+..+.....++
T Consensus       437 ~l~~~-~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~---l~~~~~---~~~i~~l~~~r~~~  509 (552)
T 3cr8_A          437 EITKN-RGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKG---LYAKAR---AGLIPEFTGVSDPY  509 (552)
T ss_dssp             HHHHT-TCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------------CCC
T ss_pred             HHHhc-CCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcccc---cccccc---HhHHHHHHhccccc
Confidence            22222 4445554421112222222221 1111347999999999999996532   111000   01112222111111


Q ss_pred             HHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhC
Q 028025          171 VQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFT  201 (215)
Q Consensus       171 ~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~  201 (215)
                         +.....-+++|+ ..++++++++|...+.
T Consensus       510 ---e~P~~adl~Idt~~~s~~e~v~~Il~~L~  538 (552)
T 3cr8_A          510 ---EVPETPELAIDTTGLAIDEAVQQILLKLE  538 (552)
T ss_dssp             ---CCCSSCSEEECCSSCCHHHHHHHHHHHHH
T ss_pred             ---cCCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence               211112366776 4799999999998875

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=99.00  E-value=5.3e-10  Score=86.23  Aligned_cols=28  Identities=25%  Similarity=0.211  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .+.++|+|+|+.||||||+++.|++.++
T Consensus         2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            2 PTLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4567999999999999999999999885

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.98  E-value=1.9e-09  Score=76.45  Aligned_cols=27  Identities=15%  Similarity=0.314  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ++.+++|.||+||||||+++.|+..+.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            456899999999999999999988763

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.98  E-value=3.3e-08  Score=72.23  Aligned_cols=170  Identities=15%  Similarity=0.217  Sum_probs=90.5

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCC--eEeeHHHHHHHHH---HcC----CCcHHHHHHHHHcCCCCCH----
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEI---KSG----SENGTMIQNMIKEGKIVPS----   82 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~--~~i~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~----   82 (215)
                      ..+.++.+++|.||+|||||||.+.|+..+..  ...+..-.-+...   ..+    ......+......+.+...    
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~   90 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF   90 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence            34667889999999999999999999887641  1111100000000   000    0111222222221111000    


Q ss_pred             ----HHHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHH
Q 028025           83 ----EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRK  158 (215)
Q Consensus        83 ----~~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~  158 (215)
                          ....+.+...+..  +..+++|   ........+.. .......++++.-+.+.+.+|+..|  |  .+..+.+.+
T Consensus        91 ~~~yg~~~~~v~~~l~~--G~illLD---LD~~~~~~i~~-~l~~~~tI~i~th~~~~l~~Rl~~r--G--~~~~e~i~~  160 (219)
T 1s96_A           91 GNYYGTSREAIEQVLAT--GVDVFLD---IDWQGAQQIRQ-KMPHARSIFILPPSKIELDRRLRGR--G--QDSEEVIAK  160 (219)
T ss_dssp             TEEEEEEHHHHHHHHTT--TCEEEEE---CCHHHHHHHHH-HCTTCEEEEEECSSHHHHHHHHHTT--S--CSCHHHHHH
T ss_pred             hccCCCCHHHHHHHHhc--CCeEEEE---ECHHHHHHHHH-HccCCEEEEEECCCHHHHHHHHHHc--C--CCCHHHHHH
Confidence                0001234444433  7999999   44555555555 3333333555555788899999876  4  466788888


Q ss_pred             HHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          159 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      |+.......    . +......+++|  .++++.++++..++..
T Consensus       161 rl~~a~~e~----~-~~~~~d~~i~N--d~l~~a~~~l~~ii~~  197 (219)
T 1s96_A          161 RMAQAVAEM----S-HYAEYDYLIVN--DDFDTALTDLKTIIRA  197 (219)
T ss_dssp             HHHHHHHHH----T-TGGGSSEEEEC--SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----h-hccCCCEEEEC--cCHHHHHHHHHHHHHH
Confidence            877543321    1 11223345555  3888899988888753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.96  E-value=2.6e-09  Score=77.59  Aligned_cols=134  Identities=13%  Similarity=0.125  Sum_probs=73.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHH--HHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR--AEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ   90 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (215)
                      ..++.+|.|.|++||||||+++.|+..+.     ..++..++...  ..........     ....+...........+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~   93 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLP-----RKGAPETFDFEGFQRLCH   93 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGG-----GTTSGGGBCHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccc-----cCCCCchhhHHHHHHHHH
Confidence            45678999999999999999999999875     45666544321  1100000000     000001111222223333


Q ss_pred             HHHHc----------------------cC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--c
Q 028025           91 KAMEE----------------------SG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--N  145 (215)
Q Consensus        91 ~~~~~----------------------~~-~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~  145 (215)
                      .....                      .. ...+++||....... ..|.. .....|..|||+++.+++.+|+.+|  .
T Consensus        94 ~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de-~~~~~-l~~~~d~~i~vd~~~~~~~~R~~~R~~~  171 (208)
T 3c8u_A           94 ALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDA-PGWRD-LTAIWDVSIRLEVPMADLEARLVQRWLD  171 (208)
T ss_dssp             HHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCS-TTGGG-GGGTCSEEEEECCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCC-chhHH-HHHhcCEEEEEeCCHHHHHHHHHHHHHh
Confidence            22111                      01 267889984322211 01222 2334689999999999999999888  2


Q ss_pred             CCCCCCcHHHHHHHHH
Q 028025          146 QGREDDNVETIRKRFK  161 (215)
Q Consensus       146 ~~~~~~~~~~~~~~~~  161 (215)
                      .+.   ..+.+.+++.
T Consensus       172 ~g~---t~~~~~~~~~  184 (208)
T 3c8u_A          172 HGL---NHDAAVARAQ  184 (208)
T ss_dssp             TTC---CHHHHHHHHH
T ss_pred             cCC---CHHHHHHHHH
Confidence            333   4556666654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.96  E-value=2.1e-10  Score=88.31  Aligned_cols=121  Identities=12%  Similarity=0.155  Sum_probs=67.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHHHHHH--HHcCCCcHHHHHHHHHcCCCCCHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAE--IKSGSENGTMIQNMIKEGKIVPSEVTIKL   88 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (215)
                      ..+|.+|+|.|++||||||+++.|+..++       ..+++.|+++...  .......     .............+.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~-----~~~g~P~~~D~~~l~~~  163 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLM-----KRKGFPESYDMPSLLRV  163 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCG-----GGTTSGGGBCHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHH-----hhccCcccccHHHHHHH
Confidence            45788999999999999999999988875       4556776643211  1100000     00000111122222333


Q ss_pred             HHHHHHc------------------------cCCCeEEEeCCCCCHHHH-----HHHHHhcCCCCcEEEEEecCHHHHHH
Q 028025           89 LQKAMEE------------------------SGNDKFLIDGFPRNEENR-----AAFEAVTKIEPEFVLFFDCSEEEMER  139 (215)
Q Consensus        89 ~~~~~~~------------------------~~~~~~iidg~~~~~~~~-----~~~~~~~~~~~~~~i~L~~~~e~~~~  139 (215)
                      +......                        .....+|+||........     ..|.. ....+|..||++++.+++.+
T Consensus       164 L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~-l~~~~D~~I~Vda~~d~~~~  242 (321)
T 3tqc_A          164 LNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVF-VSDFFDFSLFVDAQAQVIQK  242 (321)
T ss_dssp             HHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCC-GGGGCSEEEEEECCHHHHHH
T ss_pred             HHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhh-hhhhcCeEEEEECCHHHHHH
Confidence            3222110                        125678889843222110     00000 11246899999999999999


Q ss_pred             HHhhc
Q 028025          140 RILNR  144 (215)
Q Consensus       140 R~~~r  144 (215)
                      |+.+|
T Consensus       243 R~i~R  247 (321)
T 3tqc_A          243 WYIDR  247 (321)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99988

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=98.96  E-value=1.4e-09  Score=85.06  Aligned_cols=28  Identities=25%  Similarity=0.211  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .++++|+|+|+.||||||+++.|++.++
T Consensus        47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           47 PTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3567899999999999999999999885

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.95  E-value=1.6e-08  Score=72.79  Aligned_cols=161  Identities=16%  Similarity=0.237  Sum_probs=80.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC-----------------------CeEeeHHHHHHHHHHcCCCcHHHHHHHH-H
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----------------------YTHLSAGDLLRAEIKSGSENGTMIQNMI-K   75 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~-----------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~   75 (215)
                      ++..++|.||+||||||+++.|...+.                       +..++... ++..+..+.-..     .. -
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~-~~~~i~~~~~l~-----~~~~   76 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREM-MQRDIAAGDFIE-----HAEF   76 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHH-HHHHHHHTCEEE-----EEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHH-HHHHHHcCCCEe-----eeee
Confidence            456899999999999999999987653                       11222211 222111100000     00 0


Q ss_pred             cCCCCCHHHHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcHH
Q 028025           76 EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVE  154 (215)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~e~~~~R~~~r~~~~~~~~~~  154 (215)
                      .+..+.  .....+...+..  +..+++|-   .......... ....+. .++|.. +.+.+.+|...|    ..+..+
T Consensus        77 ~~n~~g--~~~~~i~~~~~~--~~~~~~~~---~~~g~~~~~~-~~~~~~-~~~l~~p~~~ilde~~~~~----d~~~e~  143 (198)
T 1lvg_A           77 SGNLYG--TSKEAVRAVQAM--NRICVLDV---DLQGVRSIKK-TDLCPI-YIFVQPPSLDVLEQRLRLR----NTETEE  143 (198)
T ss_dssp             TTEEEE--EEHHHHHHHHHT--TCEEEEEC---CHHHHHHHTT-SSCCCE-EEEEECSCHHHHHHHHHHH----TCSCHH
T ss_pred             cCccCC--CCHHHHHHHHHc--CCcEEEEC---CHHHHHHHHh-cCCCcE-EEEEeCCCHHHHHHHHHhc----CCCCHH
Confidence            000000  002233333332  45566653   2222232222 334443 355554 577889999877    335567


Q ss_pred             HHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      .+.+++......... .. .......++++.  +.++.++++.+++...
T Consensus       144 ~i~~~l~~~~~~~~~-a~-~~~~~D~iivnd--~le~a~~~l~~ii~~~  188 (198)
T 1lvg_A          144 SLAKRLAAARTDMES-SK-EPGLFDLVIIND--DLDKAYATLKQALSEE  188 (198)
T ss_dssp             HHHHHHHHHHHHTTG-GG-STTTCSEEEECS--SHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHH-hh-ccCCceEEEECC--CHHHHHHHHHHHHHHH
Confidence            788877665432111 00 112223455543  6899999999888643

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.94  E-value=1.3e-09  Score=83.93  Aligned_cols=36  Identities=19%  Similarity=0.526  Sum_probs=33.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~   55 (215)
                      ++.+|+|.||+|||||||+..||++++..+|+.|.+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            457999999999999999999999999999998765

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=98.87  E-value=2e-08  Score=76.14  Aligned_cols=161  Identities=11%  Similarity=0.074  Sum_probs=90.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (215)
                      +.+.+|+|.|.-||||||.++.|.+.++   +.++..          ..+..+...      +.        .+......
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~----------~~Pt~eE~~------~~--------yl~R~~~~  139 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL----------TKPTETERG------QW--------YFQRYVAT  139 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC----------CSCCHHHHT------SC--------TTHHHHTT
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe----------CCcChHHHh------ch--------HHHHHHHh
Confidence            4689999999999999999999999995   334432          111111111      00        11111222


Q ss_pred             c--CCCeEEEeCCCCCH----------------HHHHHHHHh-----cCCCCcEEEEEecCHHHHHHHHhhc-cCCCC--
Q 028025           96 S--GNDKFLIDGFPRNE----------------ENRAAFEAV-----TKIEPEFVLFFDCSEEEMERRILNR-NQGRE--  149 (215)
Q Consensus        96 ~--~~~~~iidg~~~~~----------------~~~~~~~~~-----~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~--  149 (215)
                      .  .|..+|+|++..+.                .....+..+     ....|++.+||++|+++..+|+..| .....  
T Consensus       140 LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~W  219 (304)
T 3czq_A          140 FPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKIW  219 (304)
T ss_dssp             CCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTTTGG
T ss_pred             cccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCccccc
Confidence            2  38999999755331                111121111     2347889999999999999999877 21111  


Q ss_pred             CCcHHHHH--HHHHHHhhcchhHHHHHH-hcCcEEEEcCCCCH---HHHHHHHHHhhCCC
Q 028025          150 DDNVETIR--KRFKVFLESSLPVVQYYE-AKGKVRKIDAAKPV---AEVFDAVKAVFTPK  203 (215)
Q Consensus       150 ~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~---~e~~~~i~~~l~~~  203 (215)
                      .....++.  +.+..|......+...-. ...+.++|+++...   -.+.+.|...|...
T Consensus       220 k~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l~~~  279 (304)
T 3czq_A          220 KLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKLDYD  279 (304)
T ss_dssp             GCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHCCCT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHHhhc
Confidence            12333333  223344443333333222 23478999997644   44555555555433

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.85  E-value=3.6e-08  Score=75.84  Aligned_cols=38  Identities=13%  Similarity=0.274  Sum_probs=31.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDL   55 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~   55 (215)
                      ..++.+|+|+|++||||||+++.|+..++       ..+++.|+.
T Consensus        77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            35678999999999999999999999876       556666553

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.82  E-value=4.5e-07  Score=63.59  Aligned_cols=138  Identities=20%  Similarity=0.236  Sum_probs=74.7

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (215)
                      .-.++.+++|.|++||||||+++.+..  +..+++. +.++..+.............        .+.........+.  
T Consensus         5 ~i~~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~-d~~~g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--   71 (171)
T 4gp7_A            5 TIPELSLVVLIGSSGSGKSTFAKKHFK--PTEVISS-DFCRGLMSDDENDQTVTGAA--------FDVLHYIVSKRLQ--   71 (171)
T ss_dssp             EEESSEEEEEECCTTSCHHHHHHHHSC--GGGEEEH-HHHHHHHCSSTTCGGGHHHH--------HHHHHHHHHHHHH--
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHcc--CCeEEcc-HHHHHHhcCcccchhhHHHH--------HHHHHHHHHHHHh--
Confidence            345678999999999999999998643  4555665 44454433322111000000        0011111222222  


Q ss_pred             CCCeEEEeCCCCCHHHHH---HHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhH
Q 028025           97 GNDKFLIDGFPRNEENRA---AFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV  170 (215)
Q Consensus        97 ~~~~~iidg~~~~~~~~~---~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (215)
                      .+...++|..........   .+.......| .+++|+.|...+..|...|  .......+.+........+....+
T Consensus        72 ~g~~~~~~~~~~~s~g~~qrv~iAral~~~p-~~lllDEPt~~Ld~~~~~R--~~~~~~~~vi~~~~~~l~~~l~~l  145 (171)
T 4gp7_A           72 LGKLTVVDATNVQESARKPLIEMAKDYHCFP-VAVVFNLPEKVCQERNKNR--TDRQVEEYVIRKHTQQMKKSIKGL  145 (171)
T ss_dssp             TTCCEEEESCCCSHHHHHHHHHHHHHTTCEE-EEEEECCCHHHHHHHHHTC--SSCCCCHHHHHHHHHHHHHHSTTH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHHcCCcE-EEEEEeCCHHHHHHHHhcc--cCCCCCHHHHHHHHHHhhhhhhhH
Confidence            266778887554433222   3332133445 4888999999999999888  322344455554444444443333

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.59  E-value=2.1e-08  Score=77.06  Aligned_cols=36  Identities=17%  Similarity=0.380  Sum_probs=32.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~   55 (215)
                      ++.+|+|+||+||||||++..|+++++..+++.|.+
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            356899999999999999999999999999998664

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.55  E-value=2.7e-08  Score=76.91  Aligned_cols=35  Identities=20%  Similarity=0.433  Sum_probs=32.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~   55 (215)
                      +.+|+|+||+||||||+|..|++.++..+++.|++
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             CceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            46899999999999999999999999999998876

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.49  E-value=8.3e-08  Score=73.05  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=32.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~   54 (215)
                      .++.+|+|+||+|||||||+..|++.++..+++.|.
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds   43 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDS   43 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence            457799999999999999999999999988888755

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.48  E-value=3.4e-07  Score=74.37  Aligned_cols=104  Identities=15%  Similarity=0.227  Sum_probs=61.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (215)
                      +.+.+|+|.|..||||+|.++.|.+.++   +.++..          ..+......      ..+    +.....+ + -
T Consensus        41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~----------~~Pt~~E~~------~~y----l~R~~~~-l-P   98 (500)
T 3czp_A           41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSF----------LRPSDEELE------RPP----QWRFWRR-L-P   98 (500)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC----------SSCCHHHHT------SCT----THHHHHH-C-C
T ss_pred             CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEe----------CCCChhhcc------CCh----hhhHHHh-C-C
Confidence            5789999999999999999999999996   333332          111111110      000    0111221 1 1


Q ss_pred             cCCCeEEEeCCCCC------------HH-------HHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           96 SGNDKFLIDGFPRN------------EE-------NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        96 ~~~~~~iidg~~~~------------~~-------~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      ..|..+|+|++..+            ..       ++..|...  ....+++.+||++|+++..+|+..|
T Consensus        99 ~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R  168 (500)
T 3czp_A           99 PKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKAL  168 (500)
T ss_dssp             CTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC---
T ss_pred             CCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHH
Confidence            13888999964322            11       11111110  5567889999999999999999988

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.47  E-value=6.5e-08  Score=73.75  Aligned_cols=36  Identities=17%  Similarity=0.297  Sum_probs=32.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~   55 (215)
                      ++.+|+|.||+||||||++..|++.++..+++.|.+
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            456899999999999999999999999888887664

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.47  E-value=1.9e-07  Score=71.25  Aligned_cols=163  Identities=16%  Similarity=0.205  Sum_probs=90.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC-CeEeeHHHHHHHHHHc---CC----C-cHHHHHHHHHcCCCCCHH-----
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKS---GS----E-NGTMIQNMIKEGKIVPSE-----   83 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-~~~i~~~~~~~~~~~~---~~----~-~~~~~~~~~~~~~~~~~~-----   83 (215)
                      +..+..|+|+||   ||+|+.+.|.+.+. ...++.....|.....   +.    - ..+.+...+..+.++...     
T Consensus       102 ~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~  178 (295)
T 1kjw_A          102 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSH  178 (295)
T ss_dssp             CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCc
Confidence            345677889998   79999999988763 1112211112211110   11    1 345555666665554321     


Q ss_pred             ---HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecC-HHHHHHHHhhccCCCCCCcHHHHHHH
Q 028025           84 ---VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKR  159 (215)
Q Consensus        84 ---~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~-~e~~~~R~~~r~~~~~~~~~~~~~~~  159 (215)
                         ...+.++..+.+  |..+|+|..+   .....+.. ....| ++||+..| .+++.+ +.+|  +.    .+.+.+|
T Consensus       179 ~YGt~~~~V~~~~~~--G~~vildid~---~g~~~l~~-~~~~p-i~IfI~pps~~~L~~-L~~R--~t----~~~i~~r  244 (295)
T 1kjw_A          179 LYGTSVQSVREVAEQ--GKHCILDVSA---NAVRRLQA-AHLHP-IAIFIRPRSLENVLE-INKR--IT----EEQARKA  244 (295)
T ss_dssp             EEEEEHHHHHHHHHT--TCEEEECCCT---THHHHHHH-TTCCC-EEEEECCSSHHHHHH-HCTT--SC----HHHHHHH
T ss_pred             EeeeeHHHHHHHHhc--CCeEEEEeCH---HHHHHHHh-cccCC-eEEEEECCCHHHHHH-HHhc--CC----HHHHHHH
Confidence               114445565554  8899999643   23334443 44556 78888876 555555 7666  32    2456667


Q ss_pred             HHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          160 FKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      +......    ...+......+++ ++ ++++.++++..+|...
T Consensus       245 l~~a~~~----e~~~~~~fd~viv-Nd-~le~a~~~l~~ii~~~  282 (295)
T 1kjw_A          245 FDRATKL----EQEFTECFSAIVE-GD-SFEEIYHKVKRVIEDL  282 (295)
T ss_dssp             HHHHHHH----HHHHGGGCSEEEC-CS-SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----HHhccccCeEEEE-Cc-CHHHHHHHHHHHHHhc
Confidence            6655321    1112222334444 43 8999999999888643

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.47  E-value=1.2e-05  Score=58.61  Aligned_cols=172  Identities=19%  Similarity=0.246  Sum_probs=80.1

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhC-CeEeeHHHHHHHH---HHcC----CCcHHHHHHHHHcCCCC------
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAE---IKSG----SENGTMIQNMIKEGKIV------   80 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~-~~~i~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~------   80 (215)
                      ++...++.+++|.||+||||||+++.|+..+. -..+..+...+..   ...+    ......+......+..+      
T Consensus        17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~   96 (218)
T 1z6g_A           17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYA   96 (218)
T ss_dssp             -----CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred             ceecCCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcc
Confidence            44556678999999999999999999988662 1111100000000   0000    00111111111100000      


Q ss_pred             CH--HHHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCc-EEEEEe-cCHHHHHHHHhhccCCCCCCcHHHH
Q 028025           81 PS--EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFD-CSEEEMERRILNRNQGREDDNVETI  156 (215)
Q Consensus        81 ~~--~~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~-~~i~L~-~~~e~~~~R~~~r~~~~~~~~~~~~  156 (215)
                      ..  ......+++.+..  ...+++|.   .......... ....++ ..+++. .+...+.+|+..+    ..+..+.+
T Consensus        97 ~~~~g~~~~~i~~~l~~--~~~~il~~---~lsggq~qR~-~i~~~~~~~~ll~~~~~~~Lde~~~~~----d~~~~~~i  166 (218)
T 1z6g_A           97 NNFYGTLKSEYDKAKEQ--NKICLFEM---NINGVKQLKK-STHIKNALYIFIKPPSTDVLLSRLLTR----NTENQEQI  166 (218)
T ss_dssp             TEEEEEEHHHHHHHHHT--TCEEEEEE---CHHHHHHHTT-CSSCCSCEEEEEECSCHHHHHHHHHHT----CCCCHHHH
T ss_pred             cccCCCcHHHHHHHHhC--CCcEEEEe---cHHHHHHHHH-HhcCCCcEEEEEeCcCHHHHHHHHHhc----CCCCHHHH
Confidence            00  0001123333333  45566662   2222222221 120122 456665 6778899999877    33456677


Q ss_pred             HHHHHHHhhcchhHHHHHH--hcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          157 RKRFKVFLESSLPVVQYYE--AKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~--~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      .+++........     +.  .....++++.  +.++.+..+...+...
T Consensus       167 ~~~l~~~~~~~~-----~~h~~~~d~iiv~~--~~~ea~~~~~~ii~~~  208 (218)
T 1z6g_A          167 QKRMEQLNIELH-----EANLLNFNLSIIND--DLTLTYQQLKNYLLNS  208 (218)
T ss_dssp             HHHHHHHHHHHH-----HHTTSCCSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-----hhcccCCCEEEECC--CHHHHHHHHHHHHHHH
Confidence            777765543221     11  2223444443  6888888888777643

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.42  E-value=8.4e-07  Score=72.10  Aligned_cols=159  Identities=10%  Similarity=0.118  Sum_probs=86.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (215)
                      +.+.+|+|.|..||||+|.++.|.+.++   +.++..          ..+.....      +..        .+......
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~----------~~Pt~~E~------~~~--------yl~R~~~~  353 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPI----------AAPTEEER------AQP--------YLWRFWRH  353 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEEC----------CSCCHHHH------TSC--------TTHHHHTT
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEe----------CCCChhhh------cch--------HHHHHHHh
Confidence            4688999999999999999999999995   444432          11111111      000        11112222


Q ss_pred             c--CCCeEEEeCCCCCH------------H-HHHHHHHh--------cCCCCcEEEEEecCHHHHHHHHhhc-cCCCC--
Q 028025           96 S--GNDKFLIDGFPRNE------------E-NRAAFEAV--------TKIEPEFVLFFDCSEEEMERRILNR-NQGRE--  149 (215)
Q Consensus        96 ~--~~~~~iidg~~~~~------------~-~~~~~~~~--------~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~--  149 (215)
                      .  .|..+|+|++..+.            . +...+.++        ....+.+.+||.+|+++..+|+..| ..+..  
T Consensus       354 lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~W  433 (500)
T 3czp_A          354 IPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKRY  433 (500)
T ss_dssp             CCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTTS
T ss_pred             CCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCcccC
Confidence            2  28999999755331            1 11111111        3456789999999999999999998 21111  


Q ss_pred             CCcHHHHH--HHHHHHhhcchhHHHHHHh-cCcEEEEcCCC---CHHHHHHHHHHhhC
Q 028025          150 DDNVETIR--KRFKVFLESSLPVVQYYEA-KGKVRKIDAAK---PVAEVFDAVKAVFT  201 (215)
Q Consensus       150 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~id~~~---~~~e~~~~i~~~l~  201 (215)
                      ..++.++.  +++..|.......+..-.. ..+.++|+++.   ..-.+.+.|...|.
T Consensus       434 k~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~  491 (500)
T 3czp_A          434 KITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIE  491 (500)
T ss_dssp             CCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHH
Confidence            01111111  2223344433333332222 23688999875   23444455544443

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=98.32  E-value=7.4e-07  Score=67.68  Aligned_cols=165  Identities=10%  Similarity=0.141  Sum_probs=91.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHc---CC-----CcHHHHHHHHHcCCCCCHHH----
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GS-----ENGTMIQNMIKEGKIVPSEV----   84 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~----   84 (215)
                      +..+..|+|+||   ||+|+.+.|.+.+.- ..++.....|.....   |.     ...+.+...+.++.++....    
T Consensus        97 ~~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn  173 (292)
T 3tvt_A           97 INYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDN  173 (292)
T ss_dssp             CSSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccc
Confidence            345566888888   599999999988742 222211111111000   00     12234444555544432111    


Q ss_pred             ----HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcHHHHHHH
Q 028025           85 ----TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVETIRKR  159 (215)
Q Consensus        85 ----~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~e~~~~R~~~r~~~~~~~~~~~~~~~  159 (215)
                          ..+.++..+.+  |..+|+|--   ......+.. ....| ++||+.. +.+++.+|+.+|    ..+..+.+..|
T Consensus       174 ~YGT~~~~V~~~~~~--gk~viLdid---~qg~~~lk~-~~~~p-i~IFI~PpS~e~L~~r~~~r----~~e~~~~~~~r  242 (292)
T 3tvt_A          174 LYGTSVASVREVAEK--GKHCILDVS---GNAIKRLQV-AQLYP-VAVFIKPKSVDSVMEMNRRM----TEEQAKKTYER  242 (292)
T ss_dssp             EEEEEHHHHHHHHHH--TCEEEECCC---THHHHHHHH-TTCCC-EEEEECCSCHHHHHHTCTTS----CTTHHHHHHHH
T ss_pred             eeEEehHHHHHHHHc--CCcEEEecc---chhhhhccc-ccccc-eEEEEECCCHHHHHHHHhCC----CchhHHHHHHH
Confidence                14556666654  889999943   344555565 66666 5777776 456677766544    44555566655


Q ss_pred             HHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025          160 FKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                      ......       .+......+++|+  ++++.++++..+|.....
T Consensus       243 ~~k~e~-------e~~~~fD~vIvNd--dle~a~~~l~~iI~~e~~  279 (292)
T 3tvt_A          243 AIKMEQ-------EFGEYFTGVVQGD--TIEEIYSKVKSMIWSQSG  279 (292)
T ss_dssp             HHHHHH-------HHTTTCSEEECCS--SHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHH-------hhhhhCCEEEECc--CHHHHHHHHHHHHHHhhC
Confidence            543322       1233233455543  789999999888865433

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=98.30  E-value=6.4e-07  Score=66.17  Aligned_cols=40  Identities=18%  Similarity=0.342  Sum_probs=35.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK   61 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~   61 (215)
                      ++|.|+|++||||||+++.|++++|+.++..++.++..+.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~   41 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA   41 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence            5899999999999999999999999999998877766543

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=98.26  E-value=5.3e-07  Score=71.12  Aligned_cols=34  Identities=18%  Similarity=0.390  Sum_probs=31.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~   54 (215)
                      +.+|+|.||+|||||||+..|++.++..+++.|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            4589999999999999999999999998898766

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=98.24  E-value=1.9e-05  Score=59.14  Aligned_cols=161  Identities=10%  Similarity=0.086  Sum_probs=88.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC---CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (215)
                      ..+.+|++.|..||||++.++.|.+.++   +.++..          ..+..+.              .....+.+....
T Consensus        73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~----------~~Pt~eE--------------~~~~ylwR~~~~  128 (289)
T 3rhf_A           73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAF----------KAPTDEE--------------KSHDFLWRIEKQ  128 (289)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC----------CSCCHHH--------------HTSCTTHHHHTT
T ss_pred             CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEEC----------CCCChhh--------------hcCCHHHHHHHh
Confidence            3578999999999999999999999996   444432          1111110              001111222222


Q ss_pred             cC--CCeEEEeCCCCCH-------------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCC--C
Q 028025           96 SG--NDKFLIDGFPRNE-------------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGR--E  149 (215)
Q Consensus        96 ~~--~~~~iidg~~~~~-------------------~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~--~  149 (215)
                      .+  |..+|+|++..+.                   .++..|...  ......+.+||.+|.++..+|+.+| ..+.  -
T Consensus       129 lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~W  208 (289)
T 3rhf_A          129 VPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHW  208 (289)
T ss_dssp             CCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGG
T ss_pred             CCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcccc
Confidence            22  8999999754331                   111222221  3344556899999999999999988 2111  1


Q ss_pred             CCcHHHHHH--HHHHHhhcchhHHHHHHh-cCcEEEEcCCCCHHH---HHHHHHHhhCCC
Q 028025          150 DDNVETIRK--RFKVFLESSLPVVQYYEA-KGKVRKIDAAKPVAE---VFDAVKAVFTPK  203 (215)
Q Consensus       150 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~e---~~~~i~~~l~~~  203 (215)
                      ..++.++.+  ++..|......++..-+. ..+.++|+++.-.-.   +.+.|...|...
T Consensus       209 K~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le~~  268 (289)
T 3rhf_A          209 KYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALGGL  268 (289)
T ss_dssp             GCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHHc
Confidence            122333333  334555544444332222 246889988643322   334444444443

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.20  E-value=1.8e-05  Score=67.64  Aligned_cols=165  Identities=15%  Similarity=0.201  Sum_probs=94.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC-CeEeeHHHHHHHHHHc---CC----C-cHHHHHHHHHcCCCCCHH------
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKS---GS----E-NGTMIQNMIKEGKIVPSE------   83 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~-~~~i~~~~~~~~~~~~---~~----~-~~~~~~~~~~~~~~~~~~------   83 (215)
                      ..+..|+|.||   ||+|+.++|.+.+. ...++.....|.....   +.    - ..+.+...+..+.++...      
T Consensus       529 ~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~  605 (721)
T 2xkx_A          529 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHL  605 (721)
T ss_pred             CCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCcc
Confidence            45678899999   49999999988774 2223333333432111   11    1 345566666666654321      


Q ss_pred             --HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCH-HHHHHHHhhccCCCCCCcHHHHHHHH
Q 028025           84 --VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQGREDDNVETIRKRF  160 (215)
Q Consensus        84 --~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~-e~~~~R~~~r~~~~~~~~~~~~~~~~  160 (215)
                        .-.+.++..+.+  ++.+|+|..   ......+.. ....| ++||+..+. +++.+ +.+|  +.    .+.+.+|+
T Consensus       606 YGt~~~~v~~~~~~--g~~~ildi~---~~~~~~l~~-~~~~p-~~ifi~pps~~~L~~-l~~R--~t----~~~~~~rl  671 (721)
T 2xkx_A          606 YGTSVQSVREVAEQ--GKHCILDVS---ANAVRRLQA-AHLHP-IAIFIRPRSLENVLE-INKR--IT----EEQARKAF  671 (721)
T ss_pred             ceeeHHHHHHHHHC--CCcEEEeCC---HHHHHHHHh-cccCC-EEEEEeCCcHHHHHH-Hhcc--CC----HHHHHHHH
Confidence              124556666654  889999953   333334443 34455 788998764 55555 7766  32    24566666


Q ss_pred             HHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025          161 KVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK  206 (215)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~  206 (215)
                      ......    ...+.....++++| + ++++.++++..+|.....+
T Consensus       672 ~~a~~~----e~~~~~~fd~vi~N-d-~l~~a~~~l~~~i~~~~~~  711 (721)
T 2xkx_A          672 DRATKL----EQEFTECFSAIVEG-D-SFEEIYHKVKRVIEDLSGP  711 (721)
T ss_pred             HHHHHH----HHhccccCcEEEEC-c-CHHHHHHHHHHHHHhccCC
Confidence            654321    11122222344444 3 8999999999998765443

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.19  E-value=1.3e-06  Score=66.62  Aligned_cols=37  Identities=38%  Similarity=0.722  Sum_probs=30.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCe--EeeHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDL   55 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~--~i~~~~~   55 (215)
                      ..|..++|.||||+|||++|+.+|+.++..  .++.+++
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l   72 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL   72 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence            456788999999999999999999999854  4455454

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.17  E-value=2.4e-06  Score=60.26  Aligned_cols=42  Identities=19%  Similarity=0.303  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh----C--CeEeeHHHHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRA   58 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~----~--~~~i~~~~~~~~   58 (215)
                      ...++..++|.||+||||||+++.++..+    |  ..+++..++...
T Consensus        34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~   81 (180)
T 3ec2_A           34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR   81 (180)
T ss_dssp             CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence            33456789999999999999999998877    3  355666665443

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.16  E-value=1.6e-06  Score=66.01  Aligned_cols=40  Identities=30%  Similarity=0.383  Sum_probs=32.2

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC-------CeEe-eHHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHL-SAGDLL   56 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i-~~~~~~   56 (215)
                      ...++.+|+|.|++||||||+++.|++.++       ...+ +.|+++
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence            356789999999999999999999998885       3445 776654

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=98.14  E-value=1.1e-06  Score=71.65  Aligned_cols=35  Identities=3%  Similarity=0.009  Sum_probs=30.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC-------eEeeHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-------THLSAGD   54 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~-------~~i~~~~   54 (215)
                      ++++|+|+|++||||||+++.|+++++.       .+++.|+
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            5689999999999999999999999986       5666544

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=98.10  E-value=1.9e-06  Score=61.31  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~   53 (215)
                      ....|+|.|++||||||+|..|+++.+ .+++.|
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD   65 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADD   65 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence            467899999999999999999999876 666553

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.07  E-value=3.8e-06  Score=67.09  Aligned_cols=34  Identities=21%  Similarity=0.416  Sum_probs=29.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ...|.-|++.||||+|||++|+++|..++..++.
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~  236 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR  236 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence            3456679999999999999999999999976665

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.07  E-value=3.8e-06  Score=67.19  Aligned_cols=34  Identities=24%  Similarity=0.416  Sum_probs=29.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ...|.-|++.||||+|||++|+++|.+++..++.
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~  245 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLK  245 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence            3457789999999999999999999999976655

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.04  E-value=2.8e-06  Score=59.94  Aligned_cols=26  Identities=38%  Similarity=0.650  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      +.++|.|++||||||+++.|+..++.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i   26 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46899999999999999999998863

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.04  E-value=4.4e-06  Score=66.86  Aligned_cols=35  Identities=26%  Similarity=0.488  Sum_probs=30.0

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ....|.-|++.||||+|||++|+++|..++..++.
T Consensus       211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~  245 (437)
T 4b4t_L          211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF  245 (437)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            34456789999999999999999999999976665

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.02  E-value=4.3e-06  Score=66.06  Aligned_cols=34  Identities=24%  Similarity=0.496  Sum_probs=29.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ...|.-|++.||||+|||++|+++|...+..++.
T Consensus       179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~  212 (405)
T 4b4t_J          179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR  212 (405)
T ss_dssp             CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence            3456679999999999999999999999977665

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.00  E-value=6.6e-06  Score=61.38  Aligned_cols=32  Identities=28%  Similarity=0.436  Sum_probs=27.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      ..+.-++|.|+||+||||+|+.+++.++..++
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~   68 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFL   68 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            44567999999999999999999999986554

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.99  E-value=7.1e-06  Score=61.21  Aligned_cols=31  Identities=26%  Similarity=0.455  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      +.-++|.|+||+||||+++.++..++..++.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~   75 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT   75 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEE
Confidence            4569999999999999999999999854443

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.99  E-value=6.2e-06  Score=62.24  Aligned_cols=27  Identities=26%  Similarity=0.524  Sum_probs=24.1

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      ++|.|||||||||+++.++..++...+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i   73 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFI   73 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence            999999999999999999999875444

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.97  E-value=7e-06  Score=62.13  Aligned_cols=33  Identities=21%  Similarity=0.432  Sum_probs=28.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ..+..++|.||||+||||+|+.+++.++..++.
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~   81 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIR   81 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            345679999999999999999999999865544

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.97  E-value=6.2e-06  Score=66.13  Aligned_cols=36  Identities=19%  Similarity=0.424  Sum_probs=30.7

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      +....|.-|++.||||+|||++|+++|.+++..++.
T Consensus       238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~  273 (467)
T 4b4t_H          238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR  273 (467)
T ss_dssp             HTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence            334567789999999999999999999999976665

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.97  E-value=7.2e-06  Score=62.76  Aligned_cols=40  Identities=23%  Similarity=0.339  Sum_probs=31.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEe--eHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRA   58 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i--~~~~~~~~   58 (215)
                      ..+..|+|.||||+||||+|+.++..++..++  +..++...
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~   88 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM   88 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence            45667999999999999999999999986544  45555443

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.97  E-value=6.5e-06  Score=63.27  Aligned_cols=28  Identities=21%  Similarity=0.249  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..++.+|+|.|++||||||+++.|+..+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            4678899999999999999999998876

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.96  E-value=5.3e-06  Score=59.92  Aligned_cols=31  Identities=23%  Similarity=0.212  Sum_probs=24.5

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ..-.++.+++|.||+||||||+++.|+..+.
T Consensus        15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3445678999999999999999999988763

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.95  E-value=8.2e-06  Score=62.17  Aligned_cols=31  Identities=23%  Similarity=0.398  Sum_probs=27.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      .+..++|.||||+||||+|+.+++.++..++
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~   83 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFL   83 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence            3567999999999999999999999986554

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.94  E-value=9.5e-06  Score=64.48  Aligned_cols=35  Identities=29%  Similarity=0.488  Sum_probs=30.1

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ....|.-|++.||||+|||++|+++|..++..++.
T Consensus       212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~  246 (437)
T 4b4t_I          212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR  246 (437)
T ss_dssp             TCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence            33456789999999999999999999999977665

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.93  E-value=1.9e-06  Score=66.86  Aligned_cols=35  Identities=23%  Similarity=0.384  Sum_probs=29.7

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeE
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~   49 (215)
                      .+.++....|+|.|+|||||||+++.|++.+++.+
T Consensus        18 ~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           18 RIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             TTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             HhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            34455567799999999999999999999998766

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.92  E-value=1e-05  Score=60.88  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=28.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ...+..++|.|+||+|||++|+.+++..+..++.
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~   94 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIK   94 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            3456789999999999999999999999866543

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.90  E-value=8.2e-06  Score=58.40  Aligned_cols=30  Identities=10%  Similarity=0.150  Sum_probs=25.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      ...++|.||||+||||+|..|++.++..++
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~   87 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI   87 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence            457999999999999999999999875544

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.89  E-value=1.1e-05  Score=63.63  Aligned_cols=35  Identities=29%  Similarity=0.296  Sum_probs=29.9

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      .-.++.+|+|.|||||||||+++.|+..++..++.
T Consensus       165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            44567799999999999999999999998876655

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.89  E-value=2e-05  Score=56.42  Aligned_cols=38  Identities=21%  Similarity=0.261  Sum_probs=29.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE   59 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~~~~   59 (215)
                      ..++|.|+||+||||+++.++..+   +  +.+++..++....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~   97 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL   97 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH
Confidence            679999999999999999999887   2  3446666655443

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.88  E-value=9.8e-06  Score=56.44  Aligned_cols=25  Identities=32%  Similarity=0.166  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .++|.|.|++||||||++..|+..+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999999876

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.88  E-value=6.6e-06  Score=65.97  Aligned_cols=33  Identities=15%  Similarity=0.343  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      .+.-|++.||||+||||+|+.||+.++..++..
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v   81 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV   81 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHcCCCceee
Confidence            345699999999999999999999998766654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.88  E-value=1.4e-05  Score=61.74  Aligned_cols=31  Identities=23%  Similarity=0.417  Sum_probs=27.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      +.-++|.||||+|||++|+.+++.++..++.
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~   81 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANSTFFS   81 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTCEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCCCEEE
Confidence            5679999999999999999999999865543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.87  E-value=1.1e-05  Score=56.91  Aligned_cols=27  Identities=19%  Similarity=0.450  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+..++|.|+||+||||+++.+++.+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            456678999999999999999999987

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.87  E-value=1e-05  Score=55.84  Aligned_cols=30  Identities=23%  Similarity=0.458  Sum_probs=26.0

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-....++.|.|+.||||||+++.|+..+
T Consensus        28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            334567799999999999999999998877

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.86  E-value=9.9e-06  Score=62.92  Aligned_cols=28  Identities=29%  Similarity=0.354  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      +..++|.||||+||||+++.++..++..
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~   78 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASELQTN   78 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            4679999999999999999999999753

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.85  E-value=1.3e-05  Score=62.99  Aligned_cols=32  Identities=16%  Similarity=0.290  Sum_probs=27.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      .+.-|+|.||||+|||++|+.+++.++..++.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~   81 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTM   81 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            34568999999999999999999999865554

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.85  E-value=1.2e-05  Score=56.46  Aligned_cols=27  Identities=22%  Similarity=0.433  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+..++|.|+||+||||+++.+++.+
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            446678999999999999999999987

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.84  E-value=1.4e-05  Score=59.42  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=23.6

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeE
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTH   49 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~   49 (215)
                      -++|.|||||||||+++.++..++...
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~~~~~   77 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEARVPF   77 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            399999999999999999999886433

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=97.84  E-value=0.00056  Score=52.07  Aligned_cols=149  Identities=11%  Similarity=0.141  Sum_probs=79.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (215)
                      +..+.-|+|+||   ||+|+.+.|.+.+.- ..++.. +-+               .+.++.+++    ...++..+.+ 
T Consensus       142 ~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~-~~r---------------~i~~~~fis----~~~V~~vl~~-  197 (308)
T 3kfv_A          142 ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAET-VSR---------------TDSPSKIIK----LDTVRVIAEK-  197 (308)
T ss_dssp             CSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCC-C-----------------------CCC----HHHHHHHHHT-
T ss_pred             cCCCCeEEEeCc---cHHHHHHHHHHhCccccccccc-ccc---------------cccCCCeec----HHHHHHHHHC-
Confidence            344555889999   799999999887742 112110 000               023445553    4455555554 


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (215)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (215)
                       |..+|+|   ........+.. ....| ++||+.. +.+++.+| .+|.+....+..   .+++....+    +...|.
T Consensus       198 -Gk~~ILD---Id~QGa~~lk~-~~~~p-i~IFI~PPS~eeL~~r-r~R~~~esee~~---~r~~~aa~e----iE~~~~  263 (308)
T 3kfv_A          198 -DKHALLD---VTPSAIERLNY-VQYYP-IVVFFIPESRPALKAL-RQWLAPASRRST---RRLYAQAQK----LRKHSS  263 (308)
T ss_dssp             -TCEEEEC---CCHHHHHHHHH-TTCCC-EEEEEEESCHHHHHHH-HHHHSTTCCCCH---HHHHHHHHH----HHHHHG
T ss_pred             -CCcEEEE---ECHHHHHHHHh-cCCCC-EEEEEeCCCHHHHHHH-HhcCCCCCHHHH---HHHHHHHHH----HHHhhh
Confidence             8999999   44555566666 66667 5666666 55667765 444111122222   222222211    111233


Q ss_pred             hcCcEEE-EcCCCCHHHHHHHHHHhhCCCccc
Q 028025          176 AKGKVRK-IDAAKPVAEVFDAVKAVFTPKDEK  206 (215)
Q Consensus       176 ~~~~~~~-id~~~~~~e~~~~i~~~l~~~~~~  206 (215)
                      .....++ +|+  ++++.++++..+|.....+
T Consensus       264 ~~FD~vI~VND--dle~A~~~L~~iI~~~~~e  293 (308)
T 3kfv_A          264 HLFTATIPLNG--TSDTWYQELKAIIREQQTR  293 (308)
T ss_dssp             GGCSEEEEECS--SSTHHHHHHHHHHHHHTTS
T ss_pred             ccCcEEEEcCC--CHHHHHHHHHHHHHHhcCC
Confidence            3333555 664  5677888888877655444

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.83  E-value=1.7e-05  Score=61.23  Aligned_cols=31  Identities=19%  Similarity=0.336  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh-CCeEe
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHL   50 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~-~~~~i   50 (215)
                      .+.-|+|.||||+|||++|+.+++.+ +..++
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~   75 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFF   75 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence            34679999999999999999999998 54443

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.83  E-value=1.4e-05  Score=61.14  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+..++|.|+||+|||++|+.+++.+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            345569999999999999999999988

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.81  E-value=1.6e-05  Score=55.70  Aligned_cols=26  Identities=15%  Similarity=0.212  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..+++|.|++||||||+++.|...+
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            35689999999999999999998875

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.81  E-value=1.6e-05  Score=60.70  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      .+.-++|.|+||+|||++|+.+++.++..++
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~   79 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFI   79 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            3557899999999999999999999985443

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.80  E-value=1.4e-05  Score=54.61  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ....++|.|++||||||+++.++..+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            56689999999999999999999877

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.79  E-value=2.1e-05  Score=61.62  Aligned_cols=31  Identities=23%  Similarity=0.417  Sum_probs=26.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      +.-|+|.||||+|||++|+.+++.++..++.
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~  114 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFS  114 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            4568999999999999999999999865543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.78  E-value=3.3e-05  Score=59.63  Aligned_cols=38  Identities=24%  Similarity=0.282  Sum_probs=30.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLR   57 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~~   57 (215)
                      .+..++|.|+||+||||+++.+++.+   +  +.+++..++..
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~   78 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ   78 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence            34579999999999999999999987   4  56677766543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.78  E-value=2.2e-05  Score=60.08  Aligned_cols=30  Identities=27%  Similarity=0.605  Sum_probs=26.3

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +...++.+++|.|++||||||+++.|+..+
T Consensus        95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             CCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            345578899999999999999999999876

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.78  E-value=1.8e-05  Score=57.97  Aligned_cols=35  Identities=11%  Similarity=0.110  Sum_probs=28.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGD   54 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~   54 (215)
                      .+..++|.|+||+||||+++.+++.++     +.+++.++
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~   90 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI   90 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence            467899999999999999999998874     34555544

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.77  E-value=2.3e-05  Score=60.01  Aligned_cols=29  Identities=34%  Similarity=0.714  Sum_probs=25.7

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...++.+|+|.|++||||||++..|+..+
T Consensus       100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            34568899999999999999999999877

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.77  E-value=2.3e-05  Score=61.40  Aligned_cols=32  Identities=28%  Similarity=0.471  Sum_probs=27.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      ..+.-|+|.|+||+|||++|+.+++.++..++
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~  146 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFF  146 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence            34667999999999999999999999986554

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.76  E-value=2.4e-05  Score=59.06  Aligned_cols=27  Identities=22%  Similarity=0.431  Sum_probs=23.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      ++|.|||||||||+++.++..++...+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i  102 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFI  102 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEE
Confidence            999999999999999999998864333

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.75  E-value=2.3e-05  Score=60.02  Aligned_cols=26  Identities=38%  Similarity=0.507  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.+|+|.|++||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            57899999999999999999999776

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.75  E-value=2.7e-05  Score=66.85  Aligned_cols=39  Identities=23%  Similarity=0.384  Sum_probs=32.0

Q ss_pred             ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      +..+....|.-|++.||||+|||++|+++|..++..++.
T Consensus       230 f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~  268 (806)
T 3cf2_A          230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL  268 (806)
T ss_dssp             GTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEE
T ss_pred             HhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence            344444567889999999999999999999999976654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.74  E-value=2.4e-05  Score=61.73  Aligned_cols=31  Identities=19%  Similarity=0.387  Sum_probs=26.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      +..++|.|+||+||||+|+.+++.++..++.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~  102 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAI  102 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4468999999999999999999999865543

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.73  E-value=2.6e-05  Score=64.20  Aligned_cols=32  Identities=28%  Similarity=0.487  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      .+..++|.||||+||||+|+.+++.+++.++.
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~  107 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILE  107 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            34689999999999999999999999976664

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.73  E-value=1.5e-05  Score=55.95  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      +|+|+|++||||||+|..|+.. +.
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~~   24 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-AP   24 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-CS
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-CC
Confidence            3799999999999999999987 64

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.72  E-value=2.9e-05  Score=60.07  Aligned_cols=28  Identities=36%  Similarity=0.570  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..++.+|+|.|++||||||+++.|+..+
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999999998876

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.72  E-value=3.1e-05  Score=60.58  Aligned_cols=30  Identities=27%  Similarity=0.605  Sum_probs=26.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +...++.+|+|.|++||||||+++.|+..+
T Consensus       152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             CCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            345678899999999999999999999876

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.72  E-value=9.4e-06  Score=60.89  Aligned_cols=31  Identities=26%  Similarity=0.451  Sum_probs=25.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      +.-++|.|+||+|||++|+.+++.++..++.
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~   74 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS   74 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            3348899999999999999999999865443

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.72  E-value=2.9e-05  Score=60.20  Aligned_cols=31  Identities=19%  Similarity=0.150  Sum_probs=26.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      +..++|.|+||+|||++|+.+++.++..++.
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~   85 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSANIKT   85 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence            4468999999999999999999999865443

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.71  E-value=1.4e-05  Score=58.86  Aligned_cols=31  Identities=29%  Similarity=0.300  Sum_probs=25.9

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-+++|.||+||||||+.+.|+--+
T Consensus        25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3445677899999999999999999997654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.69  E-value=2.5e-05  Score=59.66  Aligned_cols=34  Identities=21%  Similarity=0.492  Sum_probs=27.8

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeE
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~   49 (215)
                      +.-.+..+++|.||+|||||||++.|+.-+.-.+
T Consensus       121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I  154 (305)
T 2v9p_A          121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV  154 (305)
T ss_dssp             HTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred             EEecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence            4445678999999999999999999988774333

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.67  E-value=4.1e-05  Score=62.12  Aligned_cols=31  Identities=19%  Similarity=0.440  Sum_probs=26.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      |.-|+|.||||+||||+++.++...+..++.
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~   79 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEANVPFFH   79 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence            4459999999999999999999999865543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.67  E-value=3.7e-05  Score=57.58  Aligned_cols=28  Identities=32%  Similarity=0.540  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+.-+++|.||+||||||+.+.|+..+
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            4566789999999999999999998765

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.67  E-value=3.8e-05  Score=62.16  Aligned_cols=31  Identities=26%  Similarity=0.477  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC--CeEee
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG--YTHLS   51 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~--~~~i~   51 (215)
                      +.-+++.||||+|||++|+.+++.++  ..++.
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~   95 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCP   95 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEE
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEE
Confidence            45699999999999999999999998  44443

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.66  E-value=4e-05  Score=62.14  Aligned_cols=30  Identities=33%  Similarity=0.567  Sum_probs=26.5

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +...++.+|+|.|++||||||+++.|+..+
T Consensus       288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          288 VEGKAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            445678999999999999999999998876

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.66  E-value=3.3e-05  Score=56.49  Aligned_cols=26  Identities=15%  Similarity=0.234  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +..++|.|++|+||||+++.+++.++
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45899999999999999999999885

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.64  E-value=3.1e-05  Score=56.46  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..++.|.|++||||||+++.|+-.+
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            57799999999999999999998743

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.64  E-value=3.2e-05  Score=54.98  Aligned_cols=24  Identities=38%  Similarity=0.517  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+++|.|++||||||+++.|+..+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhc
Confidence            368999999999999999998876

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.64  E-value=5.1e-05  Score=60.16  Aligned_cols=31  Identities=19%  Similarity=0.379  Sum_probs=27.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      +.-++|.|+||+|||++|+.+++.++..++.
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~  178 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFN  178 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence            5679999999999999999999999876554

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.63  E-value=0.0003  Score=56.77  Aligned_cols=151  Identities=9%  Similarity=0.088  Sum_probs=78.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (215)
                      +..+..|+|.||+|+|   |.++|.+.+.-.+.+.  ..|  ...+...+.       +..+.    -...++..+.+  
T Consensus       221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~--~TR--pR~gE~dG~-------~Y~FT----s~~~V~~vl~~--  280 (468)
T 3shw_A          221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQIA--KSE--PRDAGTDQR-------SSGII----RLHTIKQIIDQ--  280 (468)
T ss_dssp             CSSCCCEEEESTTHHH---HHHHHHHHCTTTEEEC--CCB--C-----------------CBC----CHHHHHHHHTT--
T ss_pred             CCCCCEEEEECCCHHH---HHHHHHHhCCCceeee--cCC--CCCcccccc-------cCCcc----cHHHHHHHHHC--
Confidence            4567789999999999   8888877764322322  112  011111110       11222    24556666554  


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecC-HHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028025           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (215)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~-~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (215)
                      |+.+|+|   ....-...+.. ....| ++||+..| .+++.+ +.+|......+   .+.+++....+    +...|..
T Consensus       281 Gk~~iLd---Id~qg~~~l~~-~~~~p-~~IFI~PPS~e~L~~-~~~rl~~~see---~~~r~~~~a~~----~e~~~~~  347 (468)
T 3shw_A          281 DKHALLD---VTPNAVDRLNY-AQWYP-IVVFLNPDSKQGVKT-MRMRLCPESRK---SARKLYERSHK----LRKNNHH  347 (468)
T ss_dssp             TCEEEEC---CCHHHHHHHHH-TTCCC-EEEEEECSCHHHHHH-HHHHHCTTCCC---CHHHHHHHHHH----HHHHHGG
T ss_pred             CCeEEEE---eCHHHHHHHHh-cCCCC-EEEEEeCcCHHHHHH-HHhccCCCCHH---HHHHHHHHHHH----HHHhhhc
Confidence            8999999   44555566666 66667 57777775 455554 33331111222   33333333211    1222333


Q ss_pred             cCcEEEEcCCCCH-HHHHHHHHHhhCCC
Q 028025          177 KGKVRKIDAAKPV-AEVFDAVKAVFTPK  203 (215)
Q Consensus       177 ~~~~~~id~~~~~-~e~~~~i~~~l~~~  203 (215)
                      ....+++|+  +. ++.++++..+|...
T Consensus       348 ~fD~vIvNd--dl~d~a~~~L~~ii~~~  373 (468)
T 3shw_A          348 LFTTTINLN--SMNDGWYGALKEAIQQQ  373 (468)
T ss_dssp             GCSEEEECB--TTBCHHHHHHHHHHHHH
T ss_pred             cCCEEEECC--CcHHHHHHHHHHHHHHh
Confidence            334566654  34 36777776666543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.63  E-value=1.7e-05  Score=57.96  Aligned_cols=30  Identities=33%  Similarity=0.326  Sum_probs=24.7

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-...-+++|.|++|||||||.+.|+--+
T Consensus        25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           25 LSVKKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            333467789999999999999999997654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.63  E-value=4e-05  Score=54.28  Aligned_cols=44  Identities=14%  Similarity=0.171  Sum_probs=26.1

Q ss_pred             CCccccccccccccccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025            1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus         1 ~~~~~~~p~~~~~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ||.-...|.......-.......|+|.|.+|||||||...|...
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A            1 MGSSHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             ---------CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCccccccccccccccccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence            44444333333333334455678999999999999999999753

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.62  E-value=2.4e-05  Score=57.76  Aligned_cols=30  Identities=20%  Similarity=0.433  Sum_probs=25.2

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+..+++|.|++|||||||.+.|+..+
T Consensus        26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           26 FSIPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            444567899999999999999999997654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.62  E-value=3.5e-05  Score=52.30  Aligned_cols=24  Identities=25%  Similarity=0.474  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .-|+|.|+||+|||++|+.+++..
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhC
Confidence            348999999999999999998865

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.60  E-value=4.5e-05  Score=59.95  Aligned_cols=28  Identities=21%  Similarity=0.417  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...+..++|.||||+||||+++.+++.+
T Consensus        41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           41 GEKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999999987

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.60  E-value=3.5e-05  Score=55.60  Aligned_cols=25  Identities=20%  Similarity=0.433  Sum_probs=22.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..++|.|++|+||||+++.+++.+
T Consensus        38 ~~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           38 IPHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3349999999999999999999876

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.60  E-value=5.7e-05  Score=60.95  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh-CCeE--eeHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTH--LSAGDLL   56 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~-~~~~--i~~~~~~   56 (215)
                      .+.-|+|.||||+|||++|+.++..+ +..+  ++..++.
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~  205 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV  205 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence            34679999999999999999999998 5444  4444443

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.60  E-value=3e-05  Score=57.28  Aligned_cols=29  Identities=21%  Similarity=0.290  Sum_probs=24.2

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+ -+++|.|++||||||+.+.|+--+
T Consensus        20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence            33445 789999999999999999997655

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.59  E-value=6.3e-05  Score=60.69  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      +...++|.||||+||||+|+.+++.++..++.
T Consensus        49 ~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~   80 (447)
T 3pvs_A           49 HLHSMILWGPPGTGKTTLAEVIARYANADVER   80 (447)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            44579999999999999999999999865544

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.59  E-value=2.7e-05  Score=58.36  Aligned_cols=31  Identities=26%  Similarity=0.305  Sum_probs=25.7

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-+++|.|++|||||||.+.|+--+
T Consensus        26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           26 SLQARAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3444577899999999999999999997655

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.59  E-value=4e-05  Score=58.88  Aligned_cols=30  Identities=7%  Similarity=0.216  Sum_probs=26.8

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..+++..++|.||||+|||++++.+++.+
T Consensus        40 i~~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           40 LMSSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             HHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             hcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            345678899999999999999999999988

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.59  E-value=4.4e-05  Score=59.83  Aligned_cols=27  Identities=26%  Similarity=0.538  Sum_probs=24.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      +..++|.||||+|||++|+.+++.++.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            358999999999999999999999974

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.58  E-value=6.4e-05  Score=59.17  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+..++|.|+||+||||+++.+++.+
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            446789999999999999999999976

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.58  E-value=2.9e-05  Score=57.49  Aligned_cols=31  Identities=16%  Similarity=0.353  Sum_probs=25.8

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-+++|.|++||||||+.+.|+--+
T Consensus        22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3444577899999999999999999997654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.58  E-value=2.2e-05  Score=59.20  Aligned_cols=30  Identities=33%  Similarity=0.525  Sum_probs=24.9

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.||+||||||+++.|+--+
T Consensus        29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           29 MNIKRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            334467899999999999999999997654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.58  E-value=5.9e-05  Score=59.25  Aligned_cols=27  Identities=26%  Similarity=0.567  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+..++|.|++|+||||+++.+++.+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999977

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.58  E-value=6.2e-05  Score=61.44  Aligned_cols=30  Identities=23%  Similarity=0.437  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      +.-++|.||||+||||+++.++...+..++
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i   93 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEARVPFI   93 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            344999999999999999999998864433

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.58  E-value=5.3e-05  Score=55.26  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..+++|.|++||||||+++.++...
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999998654

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.57  E-value=5.6e-05  Score=58.25  Aligned_cols=32  Identities=19%  Similarity=0.354  Sum_probs=27.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      .+..+++.||||+||||+++.+++.++..++.
T Consensus        47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~   78 (324)
T 3u61_B           47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMF   78 (324)
T ss_dssp             CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence            35678889999999999999999999865553

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.57  E-value=4.9e-05  Score=55.03  Aligned_cols=28  Identities=25%  Similarity=0.114  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .+..+++|.|+|||||||++..++...+
T Consensus        18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~   45 (220)
T 2cvh_A           18 APGVLTQVYGPYASGKTTLALQTGLLSG   45 (220)
T ss_dssp             CTTSEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3567899999999999999999987433

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.57  E-value=3e-05  Score=58.12  Aligned_cols=30  Identities=33%  Similarity=0.378  Sum_probs=25.2

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++|||||||.+.|+--+
T Consensus        45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            344567899999999999999999997655

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.57  E-value=2.5e-05  Score=58.66  Aligned_cols=30  Identities=20%  Similarity=0.344  Sum_probs=24.9

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-++.|.|++||||||+++.|+--+
T Consensus        32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            334467899999999999999999997654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.57  E-value=2.1e-05  Score=54.95  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .++.|.|++||||||+++.|...+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998876

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.56  E-value=5.9e-05  Score=53.37  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+++++|++||||||++..++.++
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999997776655

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.56  E-value=3e-05  Score=57.96  Aligned_cols=30  Identities=33%  Similarity=0.525  Sum_probs=25.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-...-+++|.|++||||||+.+.|+--+
T Consensus        28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           28 ISVNKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             CEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344567899999999999999999997655

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.56  E-value=5.3e-05  Score=54.30  Aligned_cols=26  Identities=23%  Similarity=0.533  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..+++++++|+||||||++|..+...
T Consensus         3 ~~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            3 AMAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            45679999999999999999886433

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.56  E-value=6.4e-05  Score=57.46  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..++|.|+||+||||+|+.+++.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            379999999999999999999987

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.55  E-value=4e-05  Score=57.59  Aligned_cols=29  Identities=31%  Similarity=0.440  Sum_probs=24.8

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +.-.+.-+++|.|++|||||||.+.|+--
T Consensus        41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           41 LDVHPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44456779999999999999999999874

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.55  E-value=3.3e-05  Score=57.65  Aligned_cols=30  Identities=20%  Similarity=0.296  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++|||||||.+.|+--+
T Consensus        36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            444567899999999999999999997654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.55  E-value=2.7e-05  Score=57.84  Aligned_cols=30  Identities=30%  Similarity=0.506  Sum_probs=25.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++|||||||.+.|+--+
T Consensus        30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344567799999999999999999997655

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.55  E-value=4.1e-05  Score=55.32  Aligned_cols=25  Identities=36%  Similarity=0.428  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +.-+++|.|++|||||||++.|+-.
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999754

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.55  E-value=7.6e-05  Score=61.76  Aligned_cols=31  Identities=26%  Similarity=0.516  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      ++..++|.||||+||||+++.++..++....
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~  137 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV  137 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence            4668999999999999999999999975433

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.55  E-value=3.4e-05  Score=57.41  Aligned_cols=29  Identities=28%  Similarity=0.346  Sum_probs=24.7

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +.-.+.-+++|.|++|||||||.+.|+--
T Consensus        24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           24 LVVPKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34456779999999999999999999874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.55  E-value=3.3e-05  Score=58.13  Aligned_cols=30  Identities=30%  Similarity=0.382  Sum_probs=25.2

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++|||||||++.|+--+
T Consensus        40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           40 FTLYPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344567799999999999999999997655

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.54  E-value=7.9e-05  Score=57.44  Aligned_cols=30  Identities=20%  Similarity=0.428  Sum_probs=26.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +...++.+|+|+|++||||||++..|+..+
T Consensus       100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          100 FKENRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             CCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            334568899999999999999999998877

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.54  E-value=2.8e-05  Score=57.45  Aligned_cols=30  Identities=27%  Similarity=0.452  Sum_probs=25.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++||||||+.+.|+--+
T Consensus        27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            334467799999999999999999997654

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.54  E-value=3.5e-05  Score=57.66  Aligned_cols=30  Identities=23%  Similarity=0.355  Sum_probs=25.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+..+++|.|++|||||||.+.|+--+
T Consensus        41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            444567899999999999999999997654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.54  E-value=6.4e-05  Score=57.30  Aligned_cols=27  Identities=22%  Similarity=0.378  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .++.+|+|.|++||||||++..|+..+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999999998765

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.53  E-value=2.4e-05  Score=56.73  Aligned_cols=29  Identities=34%  Similarity=0.353  Sum_probs=24.2

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .-.+.-+++|.|++||||||+.+.|+--+
T Consensus        31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           31 TIEKGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             EEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33466789999999999999999997654

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.53  E-value=5.3e-05  Score=58.27  Aligned_cols=30  Identities=27%  Similarity=0.403  Sum_probs=25.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      +..++|.|+||+||||+|+.+++.++..++
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            456899999999999999999999986543

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.53  E-value=8e-05  Score=57.87  Aligned_cols=30  Identities=23%  Similarity=0.277  Sum_probs=25.7

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +...+..++.|.|+|||||||+.+.|+..+
T Consensus        50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           50 PQTGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             GGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            345678899999999999999999998654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.52  E-value=3e-05  Score=56.88  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=24.6

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .-.+..+++|.|++||||||+.+.|+-.+
T Consensus        30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           30 KIERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33467789999999999999999997655

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.52  E-value=5.8e-05  Score=53.93  Aligned_cols=34  Identities=21%  Similarity=0.135  Sum_probs=22.8

Q ss_pred             ccccccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           11 EADATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        11 ~~~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ...+.++..+...|+|.|.+|||||||...|...
T Consensus        14 ~~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           14 LYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             ---------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            3345555567788999999999999999999764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.51  E-value=6.9e-05  Score=59.99  Aligned_cols=27  Identities=30%  Similarity=0.593  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+|.+|++.|++||||||++..|+..+
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            358899999999999999999999777

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.50  E-value=5.9e-05  Score=53.55  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...|+|.|++|||||||.+.|+...
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            4679999999999999999997643

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.50  E-value=4.1e-05  Score=57.48  Aligned_cols=31  Identities=23%  Similarity=0.396  Sum_probs=25.9

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-+++|.|++|||||||.+.|+--+
T Consensus        27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3445577899999999999999999997654

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=97.50  E-value=6.5e-05  Score=52.16  Aligned_cols=31  Identities=16%  Similarity=0.309  Sum_probs=25.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ...-|+|.|++|+||||+|..|.++ |+..++
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lva   45 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALIDR-GHQLVC   45 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHHT-TCEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEec
Confidence            3567999999999999999999874 665554

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.50  E-value=5e-05  Score=53.26  Aligned_cols=31  Identities=16%  Similarity=0.114  Sum_probs=21.9

Q ss_pred             cccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ......+...|+|.|.+|||||||...|...
T Consensus        14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             -------CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             ccCCCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence            3334456788999999999999999999753

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.48  E-value=3.7e-05  Score=57.14  Aligned_cols=30  Identities=23%  Similarity=0.350  Sum_probs=24.7

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++|||||||.+.|+-.+
T Consensus        21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           21 GEVRAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            334467789999999999999999997654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.48  E-value=8e-05  Score=59.68  Aligned_cols=26  Identities=42%  Similarity=0.728  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +|.+|+++|++||||||++..|+..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            58999999999999999999999876

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.48  E-value=0.00016  Score=58.33  Aligned_cols=37  Identities=22%  Similarity=0.330  Sum_probs=29.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh-----C--CeEeeHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLLR   57 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~-----~--~~~i~~~~~~~   57 (215)
                      +..++|.|+||+||||+++.++..+     +  +.+++..++..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~  173 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN  173 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence            5679999999999999999999977     3  35667666543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.47  E-value=3.8e-05  Score=58.03  Aligned_cols=29  Identities=21%  Similarity=0.132  Sum_probs=24.6

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .-.+.-+++|.|++|||||||.+.|+-.+
T Consensus        43 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           43 QIAKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            33467789999999999999999997655

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.47  E-value=5.7e-05  Score=58.96  Aligned_cols=31  Identities=19%  Similarity=0.438  Sum_probs=25.6

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-...-++.|.||+||||||+.+.++--.
T Consensus        24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            3444567899999999999999999998654

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.46  E-value=0.00011  Score=59.94  Aligned_cols=37  Identities=22%  Similarity=0.461  Sum_probs=29.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEe--eHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDL   55 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i--~~~~~   55 (215)
                      ..+.-|+|.|+||+|||++|+.+++..+..++  ++.++
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l  274 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI  274 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHH
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHh
Confidence            34556999999999999999999999985544  44444

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.46  E-value=0.00011  Score=57.88  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .++|.|+||+||||+++.+++.+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999988

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.46  E-value=7.5e-05  Score=54.90  Aligned_cols=25  Identities=16%  Similarity=0.321  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +..++.|.|+|||||||++..++..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            5679999999999999999999884

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.46  E-value=0.00018  Score=55.20  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=29.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC----C--eEeeHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG----Y--THLSAGDLLRAE   59 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~----~--~~i~~~~~~~~~   59 (215)
                      +..++|.|+||+|||+++..++..+.    .  .++...+++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l  196 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV  196 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence            56799999999999999999998654    3  346666655543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.45  E-value=6.9e-05  Score=52.86  Aligned_cols=32  Identities=16%  Similarity=0.274  Sum_probs=22.8

Q ss_pred             ccccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..+.+..+...|++.|.+|||||||+..|...
T Consensus        13 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           13 NLYFQGMTEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             ------CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cccccccceeEEEEECcCCCCHHHHHHHHHcC
Confidence            33333445678999999999999999999764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.45  E-value=4.1e-05  Score=57.04  Aligned_cols=30  Identities=27%  Similarity=0.373  Sum_probs=24.9

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.++-+++|.|++||||||+.+.|+--+
T Consensus        26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            334467789999999999999999997654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.45  E-value=9.5e-05  Score=56.28  Aligned_cols=28  Identities=25%  Similarity=0.397  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      -.+..+++|.|+|||||||+++.++-.+
T Consensus        32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           32 ARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             BCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3467799999999999999999988765

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.45  E-value=5.6e-05  Score=58.47  Aligned_cols=28  Identities=14%  Similarity=0.281  Sum_probs=24.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~   49 (215)
                      .-++|.|+||+|||++++.+++.++..+
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~~~~~   74 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTMDLDF   74 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            3589999999999999999999987543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.45  E-value=7.4e-05  Score=52.76  Aligned_cols=33  Identities=21%  Similarity=0.083  Sum_probs=23.0

Q ss_pred             ccccccCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           11 EADATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        11 ~~~~~~~~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      .+.......+...|+|.|.+|||||||...|..
T Consensus        12 ~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           12 SGLVPRGSKEEMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             -------CCEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccccccCCCCccEEEEECCCCCCHHHHHHHHHc
Confidence            334444445577899999999999999999975

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.44  E-value=0.00039  Score=55.01  Aligned_cols=151  Identities=9%  Similarity=0.093  Sum_probs=79.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (215)
                      +..+..|+|+||+|   +|+.++|.+.+.-.+.++   .+.. ..+...+.       +..++    -...++..+.+  
T Consensus       229 ~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~---tr~p-R~gE~dG~-------~Y~Fv----~~~~V~~~~~~--  288 (391)
T 3tsz_A          229 AGFLRPVTIFGPIA---DVAREKLAREEPDIYQIA---KSEP-RDAGTDQR-------SSGII----RLHTIKQIIDQ--  288 (391)
T ss_dssp             CSSCCCEEEESTTH---HHHHHHHHHHCTTTEEEC---CCCC-CCSSSCCC---------CCC----CHHHHHHHHTT--
T ss_pred             CCCCCEEEEECCCH---HHHHHHHHhhCccccccc---cCCC-CCcccCCc-------cCCcC----cHHHHHHHHHc--
Confidence            34677899999998   899999988775333332   1110 01111110       00122    24556666554  


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecC-HHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028025           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (215)
Q Consensus        98 ~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~-~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (215)
                      |..+|+|   ........+.. ....| ++||+..| .+++.+| .+|......+   .+.+++....+    +...|..
T Consensus       289 Gk~~iLd---Id~qg~~~l~~-~~~~p-~~IFI~PPS~~~L~~~-~~r~~~~s~e---~~~~~~~~a~~----~e~~~~~  355 (391)
T 3tsz_A          289 DKHALLD---VTPNAVDRLNY-AQWYP-IVVFLNPDSKQGVKTM-RMRLCPESRK---SARKLYERSHK----LRKNNHH  355 (391)
T ss_dssp             TCEEEEC---CCHHHHHHHHH-TTCCC-EEEEEECCCHHHHHHH-HHHHCSSCCC---CHHHHHHHHHH----HHHHHGG
T ss_pred             CCEEEEE---eCHHHHHHHHh-CCCCC-EEEEEeCcCHHHHHHH-HhcCCCCCHH---HHHHHHHHHHH----HHHhccc
Confidence            8999999   44555566666 66667 56777764 5666665 4441111222   23333333211    1222333


Q ss_pred             cCcEEEEcCCCCHH-HHHHHHHHhhCCC
Q 028025          177 KGKVRKIDAAKPVA-EVFDAVKAVFTPK  203 (215)
Q Consensus       177 ~~~~~~id~~~~~~-e~~~~i~~~l~~~  203 (215)
                      ....+++|+  +++ +.++++..++...
T Consensus       356 ~fd~vivNd--~l~~~a~~~l~~ii~~~  381 (391)
T 3tsz_A          356 LFTTTINLN--SMNDGWYGALKEAIQQQ  381 (391)
T ss_dssp             GCSEEEECC--TTCCHHHHHHHHHHHHH
T ss_pred             cCcEEEECC--CcHHHHHHHHHHHHHHh
Confidence            334666665  344 4667776666543

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.44  E-value=9.6e-05  Score=57.45  Aligned_cols=25  Identities=20%  Similarity=0.434  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ..++|.||||+||||+++.+++.++
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3489999999999999999999864

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.43  E-value=9e-05  Score=52.29  Aligned_cols=42  Identities=14%  Similarity=0.102  Sum_probs=21.7

Q ss_pred             CCccccccccccccccCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025            1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus         1 ~~~~~~~p~~~~~~~~~~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ||-.-+.|-..+.... ..+...|+|.|.+|||||||...|..
T Consensus         1 ~~~~~~~~~~~~~~~~-~~~~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A            1 MGHHHHHHGSLVPRGS-RSRIFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             -------------------CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccccccccccCCCC-CCceEEEEEECCCCCCHHHHHHHHHc
Confidence            3443333433333332 23567899999999999999999875

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.42  E-value=0.00011  Score=57.91  Aligned_cols=28  Identities=32%  Similarity=0.540  Sum_probs=24.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+..+|+|.|++||||||+++.|+..+
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3456789999999999999999998866

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.42  E-value=0.00012  Score=57.26  Aligned_cols=26  Identities=35%  Similarity=0.523  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-+|+|+||+||||||+.+.++..+
T Consensus       122 ~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            44589999999999999999998766

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.42  E-value=7.3e-05  Score=58.44  Aligned_cols=31  Identities=29%  Similarity=0.402  Sum_probs=25.7

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-...-++.|.||+||||||+.+.|+--.
T Consensus        23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            3444567899999999999999999998654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.42  E-value=9.9e-05  Score=55.51  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.++|.|++||||||+.+.|+...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998766

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.42  E-value=0.002  Score=47.29  Aligned_cols=25  Identities=36%  Similarity=0.582  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +..++.|.|+||+||||+|..++-+
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            5779999999999999999887643

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.41  E-value=7.5e-05  Score=58.74  Aligned_cols=30  Identities=23%  Similarity=0.300  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-++.|.||+||||||+.+.|+--+
T Consensus        24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            444567899999999999999999998654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.40  E-value=0.00012  Score=57.19  Aligned_cols=27  Identities=30%  Similarity=0.382  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++..+|+|+|+||+||||++..|+..+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999998876

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.40  E-value=0.00011  Score=54.00  Aligned_cols=26  Identities=31%  Similarity=0.498  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..+++|.|+|||||||++..++...
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~   47 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNG   47 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999998887654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.40  E-value=7.9e-05  Score=58.27  Aligned_cols=31  Identities=23%  Similarity=0.237  Sum_probs=25.7

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-++.|.|++|||||||.+.|+--+
T Consensus        48 sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           48 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            3444577899999999999999999997654

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.40  E-value=7.9e-05  Score=58.31  Aligned_cols=31  Identities=29%  Similarity=0.442  Sum_probs=25.7

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-...-++.|.||+||||||+.+.|+--+
T Consensus        23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            3444567899999999999999999998654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.40  E-value=0.00011  Score=51.82  Aligned_cols=44  Identities=11%  Similarity=0.111  Sum_probs=24.2

Q ss_pred             CCcccccccccc-ccccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025            1 MGTVVETPVKEA-DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus         1 ~~~~~~~p~~~~-~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ||.--+.|.... ...........|+|.|.+|||||||...|...
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A            1 MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             -------------CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCccccccccccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcC
Confidence            444444444433 22323344678999999999999999998754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.40  E-value=0.00012  Score=51.71  Aligned_cols=32  Identities=9%  Similarity=0.137  Sum_probs=26.0

Q ss_pred             ccccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ...++..+...|+|.|.+|||||||...|...
T Consensus        15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           15 PEQYPEGGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             GGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             hhhCCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34445566788999999999999999999654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.39  E-value=2.7e-05  Score=52.74  Aligned_cols=25  Identities=24%  Similarity=0.194  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .-|+|.|+||+|||++|+.+++..+
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CcEEEECCCCccHHHHHHHHHHhCC
Confidence            3488999999999999999988776

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.39  E-value=0.00014  Score=52.92  Aligned_cols=28  Identities=18%  Similarity=0.171  Sum_probs=23.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+..+++++|++||||||++..++.++
T Consensus         9 ~~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A            9 KKIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             --CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cCCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            3457899999999999999999888877

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.39  E-value=8.6e-05  Score=57.70  Aligned_cols=23  Identities=22%  Similarity=0.496  Sum_probs=21.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhC
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +++.||||+||||+++.+++.+.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            89999999999999999999873

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.39  E-value=0.00013  Score=56.93  Aligned_cols=26  Identities=27%  Similarity=0.250  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...+|+|.|+|||||||+...|...+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            37889999999999999999998754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.39  E-value=8.4e-05  Score=58.40  Aligned_cols=31  Identities=29%  Similarity=0.369  Sum_probs=25.6

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-++.|.||+||||||+.+.|+--+
T Consensus        31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            3444567899999999999999999998654

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.39  E-value=0.00014  Score=54.21  Aligned_cols=29  Identities=17%  Similarity=0.383  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      ++...|+|.||||+|||++|.+|+..++.
T Consensus       102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A          102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            34557999999999999999999997644

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.38  E-value=0.00014  Score=52.59  Aligned_cols=27  Identities=26%  Similarity=0.389  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+...|+|.|.+||||||++..|+..+
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999998875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.38  E-value=6.9e-05  Score=56.91  Aligned_cols=28  Identities=21%  Similarity=0.419  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      -.+..+++|.|++|||||||.+.|+-.+
T Consensus        61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           61 IERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3467789999999999999999997654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.38  E-value=0.00011  Score=51.12  Aligned_cols=27  Identities=19%  Similarity=0.194  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .....|+|.|.+|||||||...|...-
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence            345789999999999999999997643

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.38  E-value=7.2e-05  Score=58.37  Aligned_cols=30  Identities=30%  Similarity=0.300  Sum_probs=24.8

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-...-++.|.||+||||||+.+.|+--.
T Consensus        36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           36 FQIREGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            333467789999999999999999998654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.37  E-value=0.00011  Score=57.21  Aligned_cols=24  Identities=33%  Similarity=0.796  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +. ++|.||+|+||||+++.++..+
T Consensus        37 ~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           37 PH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             Ce-EEEECCCCCCHHHHHHHHHHHH
Confidence            44 9999999999999999999965

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.37  E-value=0.00011  Score=59.64  Aligned_cols=26  Identities=19%  Similarity=0.447  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...-++|.|+||+|||++++.|++.+
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            44567899999999999999999997

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.37  E-value=0.00014  Score=51.20  Aligned_cols=30  Identities=17%  Similarity=0.084  Sum_probs=23.4

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .....+...|+|.|.+|||||||...+...
T Consensus        14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           14 LYFQGPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             --CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            334456678999999999999999888654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.36  E-value=0.00012  Score=52.66  Aligned_cols=32  Identities=13%  Similarity=0.145  Sum_probs=22.5

Q ss_pred             ccccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+.-.......|+|.|.+|||||||...|...
T Consensus        20 ~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           20 HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             -------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCCcccceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            33333345678999999999999999999764

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.36  E-value=7.4e-05  Score=53.64  Aligned_cols=28  Identities=14%  Similarity=0.226  Sum_probs=25.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ++..+...|+|.|++|||||||.+.|+.
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            7777888999999999999999998854

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.36  E-value=0.00012  Score=58.79  Aligned_cols=27  Identities=37%  Similarity=0.575  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +++.+|+|.|++||||||++..|+..+
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999876

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.35  E-value=0.0001  Score=56.74  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +..+++|+|+.||||||+.+.|...
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhh
Confidence            4568999999999999999999854

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.35  E-value=7.8e-05  Score=55.84  Aligned_cols=29  Identities=34%  Similarity=0.402  Sum_probs=24.3

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ++.-. .-+++|.|++|||||||.+.|+-.
T Consensus        25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           25 NLEVN-GEKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             EEEEC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             eEEEC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence            34445 778999999999999999999754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.35  E-value=0.00014  Score=51.06  Aligned_cols=25  Identities=24%  Similarity=0.415  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ++..|+|.|++|||||||...|+..
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999763

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.35  E-value=0.00015  Score=62.27  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=29.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      ...+.-|++.||||+|||.+|+++|..++..++..
T Consensus       508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v  542 (806)
T 3cf2_A          508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI  542 (806)
T ss_dssp             CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred             CCCCceEEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence            34566799999999999999999999999776653

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.35  E-value=0.00011  Score=57.80  Aligned_cols=28  Identities=32%  Similarity=0.500  Sum_probs=24.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      ...++|.|++|||||||++.|+..+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            5689999999999999999999987643

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.34  E-value=0.00015  Score=56.88  Aligned_cols=27  Identities=15%  Similarity=0.219  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      +..++|.|++|+||||+++.+++.++.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            457899999999999999999999864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.34  E-value=0.00017  Score=57.58  Aligned_cols=28  Identities=25%  Similarity=0.413  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .+.-+|+|+||+||||||+.+.|...++
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            3456899999999999999999988874

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.34  E-value=4.9e-05  Score=58.15  Aligned_cols=28  Identities=21%  Similarity=0.358  Sum_probs=24.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      -.+..+++|.|++|||||||++.|+.-+
T Consensus        77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           77 VMPGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            3467789999999999999999997655

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.34  E-value=0.00012  Score=55.16  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..++.|.|++|||||||+..++...
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999988543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.34  E-value=0.00019  Score=49.51  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=22.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.+...|+|.|.+|||||||...|..
T Consensus         4 ~~~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            4 MTREMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhc
Confidence            34567899999999999999999965

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=97.34  E-value=0.00018  Score=55.64  Aligned_cols=33  Identities=12%  Similarity=0.153  Sum_probs=28.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~   54 (215)
                      ..++|.|++|+||||+++.+++..++.+++...
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~   64 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE   64 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence            689999999999999999999988877777644

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.33  E-value=0.00013  Score=50.29  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ...|+|.|++|+|||||.+.|..
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            36799999999999999999975

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.33  E-value=9.6e-05  Score=57.98  Aligned_cols=27  Identities=30%  Similarity=0.428  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ...+++|.|++||||||+++.|+..+.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            566899999999999999999988764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.32  E-value=9.1e-05  Score=58.24  Aligned_cols=30  Identities=30%  Similarity=0.358  Sum_probs=24.9

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-...-++.|.||+||||||+.+.|+--.
T Consensus        24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            334467789999999999999999998654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.32  E-value=0.00019  Score=52.17  Aligned_cols=27  Identities=19%  Similarity=0.334  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+...|+|.|.+||||||++..|+...
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999998875

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.32  E-value=0.00015  Score=51.19  Aligned_cols=32  Identities=16%  Similarity=0.235  Sum_probs=22.3

Q ss_pred             ccccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .......+...|+|.|.+|||||||...|...
T Consensus        13 ~~~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           13 NLYFQGPLEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             -------CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             hHHhCCCceEEEEEECCCCCcHHHHHHHHHhC
Confidence            33334456678999999999999999998754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.31  E-value=7.6e-05  Score=52.24  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La   42 (215)
                      .+...|+|.|++|||||||...|.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            677889999999999999999886

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.31  E-value=6.7e-05  Score=58.44  Aligned_cols=31  Identities=23%  Similarity=0.311  Sum_probs=25.5

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-++.|.||+||||||+.+.|+--.
T Consensus        20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           20 SLKVESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            3444567799999999999999999998654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=97.30  E-value=0.00011  Score=51.79  Aligned_cols=33  Identities=24%  Similarity=0.143  Sum_probs=22.4

Q ss_pred             ccccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .......+...|+|.|.+|||||||...|....
T Consensus        13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           13 GLVPRGSKEVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             --------CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             CcccCCCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence            344444567889999999999999999986554

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.30  E-value=0.00019  Score=49.96  Aligned_cols=27  Identities=22%  Similarity=0.447  Sum_probs=23.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +.+...|+|.|.+|||||||...|...
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            345678999999999999999999765

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.30  E-value=0.00017  Score=51.42  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ...|+|.|++|||||||.+.|+..
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            357999999999999999999764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.30  E-value=0.00019  Score=50.97  Aligned_cols=31  Identities=13%  Similarity=0.306  Sum_probs=22.6

Q ss_pred             cccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +.+...+...|+|.|.+|||||||...|...
T Consensus        21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             ------CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             hccCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            3444456778999999999999999999764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.30  E-value=0.00012  Score=57.91  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=23.8

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .-.+.-++.|.||+||||||+.+.|+--
T Consensus        43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           43 SISPGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence            3346779999999999999999999753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.30  E-value=0.00016  Score=50.32  Aligned_cols=26  Identities=31%  Similarity=0.434  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+...|+|.|++|||||||...|...
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            45677999999999999999998653

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.30  E-value=0.00028  Score=50.16  Aligned_cols=28  Identities=18%  Similarity=0.131  Sum_probs=24.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+..+++++|++||||||.+..++.++
T Consensus         5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            5 KDHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            3456899999999999999999998887

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.30  E-value=0.00019  Score=54.86  Aligned_cols=27  Identities=22%  Similarity=0.450  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++...++|.||||+||||+++.+++.+
T Consensus        36 ~~~~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           36 KNIPHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             TCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence            333349999999999999999999986

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.29  E-value=0.00017  Score=49.52  Aligned_cols=25  Identities=16%  Similarity=0.227  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +...|+|.|.+|||||||+..|...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            4567999999999999999999764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.29  E-value=0.00022  Score=50.32  Aligned_cols=31  Identities=13%  Similarity=0.133  Sum_probs=25.1

Q ss_pred             cccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ...+....+.|+|.|.+|||||||...|...
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             hhCCCCCCeEEEEECCCCCCHHHHHHHHHcC
Confidence            3444556678999999999999999998664

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.29  E-value=0.00018  Score=51.16  Aligned_cols=32  Identities=13%  Similarity=0.267  Sum_probs=22.0

Q ss_pred             ccccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+.....+...|+|.|.+|||||||...|...
T Consensus        20 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           20 AKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             --------CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             cCCcCcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            34445566788999999999999999999753

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.28  E-value=8.8e-05  Score=57.65  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=22.0

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhC
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ++|.|+||+|||++|+.+++.++
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            99999999999999999999886

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.28  E-value=0.00014  Score=54.36  Aligned_cols=33  Identities=18%  Similarity=0.341  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAG   53 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~   53 (215)
                      +.-|+|.|+||+|||++|+.+++..+     +..+++.
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~   66 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA   66 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence            34588999999999999999998864     4455543

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.27  E-value=0.00021  Score=54.86  Aligned_cols=27  Identities=22%  Similarity=0.337  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +...++|.|+||+||||+++.+++.++
T Consensus        45 ~~~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           45 SMPHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            333499999999999999999999863

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.27  E-value=0.00017  Score=55.30  Aligned_cols=32  Identities=25%  Similarity=0.277  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC--CeEeeH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA   52 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~   52 (215)
                      ...++|.|+||+||||||..++...|  ..+++.
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            45689999999999999999987643  334544

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.26  E-value=0.00018  Score=50.56  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +.+|.|++||||||++++|.--++
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            899999999999999999976554

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.26  E-value=0.00024  Score=55.22  Aligned_cols=29  Identities=24%  Similarity=0.211  Sum_probs=25.2

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...+..+|+|.|+||+||||++..|+..+
T Consensus        52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34678899999999999999999998765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.25  E-value=0.0002  Score=50.28  Aligned_cols=26  Identities=19%  Similarity=0.247  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+...|++.|.+|||||||...|...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            56788999999999999999998653

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.00023  Score=50.24  Aligned_cols=26  Identities=15%  Similarity=0.234  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+...|+|.|++||||||+...|...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.25  E-value=0.00019  Score=56.08  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..++.|.|+||||||||+..++-..
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            57799999999999999999998876

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.24  E-value=0.0002  Score=48.95  Aligned_cols=24  Identities=33%  Similarity=0.421  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +..|+|.|++|||||||...|...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            467999999999999999998753

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.24  E-value=0.00025  Score=57.94  Aligned_cols=27  Identities=33%  Similarity=0.629  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .++.+|+|+|++||||||++..|+..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999999766

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.24  E-value=0.00023  Score=49.42  Aligned_cols=26  Identities=23%  Similarity=0.342  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+...|+|.|.+|||||||...|...
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhC
Confidence            34577999999999999999999753

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.24  E-value=0.00023  Score=55.58  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..++.|.|+||||||||+..++...
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999998765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.24  E-value=0.00023  Score=49.60  Aligned_cols=28  Identities=11%  Similarity=0.130  Sum_probs=22.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+.+...|+|.|.+|+|||||...+...
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            4 SASRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456678999999999999999998753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.24  E-value=0.00015  Score=50.64  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      .+...|+|.|.+|||||||...|..
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHc
Confidence            3567899999999999999999974

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.24  E-value=0.00029  Score=49.97  Aligned_cols=26  Identities=19%  Similarity=0.321  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+...|+|.|.+|||||||...|...
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            45678999999999999999999765

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.23  E-value=0.00021  Score=49.70  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +...|+|.|.+|||||||.+.|+..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3567999999999999999999764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.23  E-value=7.1e-05  Score=58.45  Aligned_cols=31  Identities=23%  Similarity=0.236  Sum_probs=25.7

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-...-++.|.||+||||||+.+.|+--.
T Consensus        25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           25 NINIENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3444567899999999999999999998644

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.22  E-value=0.00019  Score=50.89  Aligned_cols=31  Identities=23%  Similarity=0.129  Sum_probs=21.8

Q ss_pred             ccccCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ...-++.....|+|.|.+|||||||...|..
T Consensus         9 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A            9 HHMGQSKTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             -------CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             ccccCCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3344556677899999999999999999854

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.22  E-value=0.00028  Score=49.99  Aligned_cols=30  Identities=20%  Similarity=0.206  Sum_probs=25.0

Q ss_pred             cccCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.+...+...|+|.|.+|||||||...|..
T Consensus        22 ~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           22 SRIFGKKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             GGTTTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             HHhccCCccEEEEECCCCCCHHHHHHHHHh
Confidence            444456778899999999999999999854

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.22  E-value=0.00024  Score=49.32  Aligned_cols=25  Identities=32%  Similarity=0.472  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      .+...|+|.|.+|||||||...|..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4567899999999999999999965

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.21  E-value=0.00025  Score=48.36  Aligned_cols=24  Identities=21%  Similarity=0.439  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.|++.|.+||||||+...|....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999997643

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.21  E-value=0.00023  Score=48.61  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..|++.|.+||||||++..|...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            56999999999999999999764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.21  E-value=0.00027  Score=50.98  Aligned_cols=27  Identities=15%  Similarity=0.191  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+...|+|.|++||||||+...|....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999998754

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.00014  Score=58.91  Aligned_cols=28  Identities=18%  Similarity=0.261  Sum_probs=24.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      -....+++|.|++|||||||++.|+..+
T Consensus       135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            3467789999999999999999998765

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.20  E-value=0.00033  Score=56.18  Aligned_cols=27  Identities=30%  Similarity=0.535  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .++.+|++.|++||||||++..|+..+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999998766

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.19  E-value=0.00025  Score=49.07  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +...|+|.|.+|+|||||.+.|..
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhc
Confidence            356799999999999999999864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.19  E-value=0.0004  Score=51.65  Aligned_cols=28  Identities=25%  Similarity=0.313  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+..++++.|.+||||||++..|+..+
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            3467889999999999999999998665

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.19  E-value=0.00026  Score=48.48  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ...|++.|.+|||||||...|...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            467999999999999999999754

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.18  E-value=0.00032  Score=53.43  Aligned_cols=25  Identities=28%  Similarity=0.624  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.+|++.|++|+||||++..|+..+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999999777

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=97.18  E-value=0.00026  Score=50.34  Aligned_cols=26  Identities=12%  Similarity=0.175  Sum_probs=21.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ..+...|+|.|.+|||||||...|..
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHh
Confidence            44577899999999999999999864

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.17  E-value=0.0002  Score=57.09  Aligned_cols=27  Identities=22%  Similarity=0.401  Sum_probs=22.0

Q ss_pred             CCCCeE--EEEEcCCCCChHHHHHHHHHH
Q 028025           18 VKKPTV--VFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        18 ~~~~~~--I~i~G~~gsGKsTla~~La~~   44 (215)
                      -.++.+  ++|.|++|||||||.+.|+..
T Consensus        37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           37 VSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            345556  999999999999999999654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.17  E-value=0.00024  Score=49.44  Aligned_cols=26  Identities=23%  Similarity=0.201  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+...|+|.|.+|||||||...|...
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34577999999999999999999763

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.17  E-value=0.00022  Score=54.61  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .++|.|++|+||||+++.+++.+
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            39999999999999999999986

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.16  E-value=0.00015  Score=56.21  Aligned_cols=27  Identities=41%  Similarity=0.495  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ...+++|.|++||||||+++.|+..+.
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            355899999999999999999987763

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.16  E-value=0.00024  Score=61.14  Aligned_cols=26  Identities=19%  Similarity=0.447  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+.-++|.|+||+|||++|+.|++.+
T Consensus       200 ~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            44568999999999999999999997

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.16  E-value=0.00024  Score=48.88  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ...|++.|.+|||||||...|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            46799999999999999999975

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.16  E-value=0.00029  Score=48.28  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ...|+|.|.+|||||||.+.|...
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            457999999999999999999753

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=97.15  E-value=0.0013  Score=50.47  Aligned_cols=165  Identities=12%  Similarity=0.126  Sum_probs=79.4

Q ss_pred             EEEEcCCCCChHH-------HHHHHHHHhCCeEeeH---HHHHHHH--HHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHH
Q 028025           24 VFVLGGPGSGKGT-------QCANIVEHFGYTHLSA---GDLLRAE--IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQK   91 (215)
Q Consensus        24 I~i~G~~gsGKsT-------la~~La~~~~~~~i~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (215)
                      |+|.||.+.|=-+       |...|.++|+-.+.-+   .|+...-  .......+..+......+.   ......-++.
T Consensus       145 vvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~---~~ev~seVe~  221 (337)
T 4dey_A          145 VVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS---LAEVQSEIER  221 (337)
T ss_dssp             EEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC-------------------CCC---HHHHHHHHHH
T ss_pred             eEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhcccchhhhcccccccc---hHHHHhHHHH
Confidence            8999999999764       6666777776432111   0111000  0000011111122222221   1122344555


Q ss_pred             HHHcc-CCCeEEEeCCCC-CHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcch
Q 028025           92 AMEES-GNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVETIRKRFKVFLESSL  168 (215)
Q Consensus        92 ~~~~~-~~~~~iidg~~~-~~~~~~~~~~~~~~~~~~~i~L~~-~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~  168 (215)
                      ..... .|+.+|+|--+. ..   ..+.. ..+.+- +||+.. +.+++.+|+..|  |.  +..+.+..++.....   
T Consensus       222 i~~v~~~Gk~vILDIDvQnGa---~qlk~-~~~~~i-~IFI~PPS~eeLe~RL~~R--Gt--~~~~rl~~al~~ae~---  289 (337)
T 4dey_A          222 IFELARTLQLVVLDADTINHP---AQLSK-TSLAPI-VVYVKISSPKVLQRLIKSR--GK--SQAKHLNVQMVAADK---  289 (337)
T ss_dssp             HHHHTTTCCEEEEEETTCCSG---GGTTT-SSCCCE-EEEECCSCHHHHHHHHHTT--CH--HHHTTHHHHHHHHHH---
T ss_pred             HHHHHhCCCEEEEEeCcHHHH---HHHHh-cCCCCE-EEEEECcCHHHHHHHHHhC--Cc--hHHHHHHHHHHHHHH---
Confidence            44433 389999994332 22   22333 445553 555555 678899999988  32  222333333322221   


Q ss_pred             hHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025          169 PVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK  206 (215)
Q Consensus       169 ~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~  206 (215)
                       ....+.....++++|+  ++++.++++..++......
T Consensus       290 -E~~~~~~~FDyvIVND--dLe~A~~~L~~iI~~~~~~  324 (337)
T 4dey_A          290 -LAQCPPELFDVILDEN--QLEDACEHLADYLEAYWKA  324 (337)
T ss_dssp             -HHHSCGGGCSEEECCS--SHHHHHHHHHHHHHHHHHH
T ss_pred             -HHhhCcccCCEEEECC--CHHHHHHHHHHHHHHHHhc
Confidence             1221223334566654  6888888888888664443

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.15  E-value=0.00031  Score=49.26  Aligned_cols=26  Identities=19%  Similarity=0.326  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+...|+|.|++|||||||...|...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999754

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.15  E-value=0.00035  Score=53.23  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.+|++.|++||||||++..|+..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            67789999999999999999998876

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.14  E-value=0.00022  Score=50.12  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ..|+|.|++|||||||.+.|+.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4699999999999999999976

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.14  E-value=0.00025  Score=49.72  Aligned_cols=25  Identities=20%  Similarity=0.434  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +...|+|.|.+|||||||...|...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC
Confidence            4567999999999999999999754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=97.13  E-value=0.00031  Score=50.10  Aligned_cols=25  Identities=12%  Similarity=0.157  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ....|+|.|.+|||||||...|...
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            4567999999999999999999763

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.13  E-value=0.00027  Score=51.95  Aligned_cols=27  Identities=19%  Similarity=0.372  Sum_probs=21.8

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +......|+|.|.+||||||+...|..
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcC
Confidence            344567899999999999999999865

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.11  E-value=0.0002  Score=58.64  Aligned_cols=27  Identities=26%  Similarity=0.294  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .+..|+|+|++||||||+++.|+..+.
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            455799999999999999999987663

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.11  E-value=0.00035  Score=54.53  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSA   52 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~   52 (215)
                      +..++.|.|+|||||||++..++...     ...+++.
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~   97 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA   97 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            56789999999999999999988654     2455654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.11  E-value=0.00025  Score=49.19  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ....|+|.|.+|||||||...|...
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            3567999999999999999999653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.11  E-value=0.0003  Score=48.41  Aligned_cols=25  Identities=24%  Similarity=0.224  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ....|+|.|.+|||||||...|...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3567999999999999999999754

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.09  E-value=0.00048  Score=53.38  Aligned_cols=28  Identities=11%  Similarity=0.139  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      -+..+++.|++|+||||+|+.+++.+..
T Consensus        23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~   50 (334)
T 1a5t_A           23 GHHALLIQALPGMGDDALIYALSRYLLC   50 (334)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             cceeEEEECCCCchHHHHHHHHHHHHhC
Confidence            3567999999999999999999999865

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.09  E-value=0.00036  Score=47.96  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ...|+|.|++|||||||...|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            45799999999999999999975

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.08  E-value=0.0004  Score=47.26  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.+.+|.|+.||||||+..++.=-+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4588999999999999999985433

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.08  E-value=0.00019  Score=58.62  Aligned_cols=25  Identities=32%  Similarity=0.481  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .-|+|.|+||+|||++|+.+++.++
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CeeEeecCchHHHHHHHHHHHHHHh
Confidence            3589999999999999999999874

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.08  E-value=0.00036  Score=48.94  Aligned_cols=26  Identities=15%  Similarity=0.217  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .....|+|.|.+|||||||...|...
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence            34567999999999999999999764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.08  E-value=0.0003  Score=50.43  Aligned_cols=26  Identities=15%  Similarity=0.137  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .....|+|.|.+|||||||...|...
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcC
Confidence            34568999999999999999999763

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.08  E-value=0.00041  Score=49.39  Aligned_cols=26  Identities=19%  Similarity=0.265  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+...|+|.|.+|||||||...|...
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            44577999999999999999999753

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.07  E-value=0.00033  Score=55.62  Aligned_cols=23  Identities=17%  Similarity=0.410  Sum_probs=20.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIV   42 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La   42 (215)
                      +..++.|.|+||||||||+..|+
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHH
Confidence            46789999999999999999876

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.07  E-value=0.00045  Score=48.23  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+...|+|.|.+|||||||...|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567999999999999999999754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.07  E-value=0.00031  Score=48.23  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ...|++.|++|||||||...|...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            356999999999999999998653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.07  E-value=0.00037  Score=47.75  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIV   42 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La   42 (215)
                      ..|+|.|.+|||||||.+.|.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            569999999999999999885

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.07  E-value=0.00036  Score=54.47  Aligned_cols=26  Identities=15%  Similarity=0.248  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...+++|.|++|||||||.+.|+...
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccc
Confidence            35689999999999999999997543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=97.06  E-value=0.00033  Score=49.95  Aligned_cols=43  Identities=19%  Similarity=0.292  Sum_probs=21.4

Q ss_pred             CCccccccccccccc--cCC--CCCeEEEEEcCCCCChHHHHHHHHH
Q 028025            1 MGTVVETPVKEADAT--VTV--KKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus         1 ~~~~~~~p~~~~~~~--~~~--~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ||.-.++|..+.+..  ...  .+...|+|.|.+|||||||...|..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A            1 MGSSHHHHHHSSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             ---------------------CCEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             CCccccccccccccccccccccCcceEEEEECcCCCCHHHHHHHHHh
Confidence            444455555544322  111  2356799999999999999999864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.06  E-value=0.00037  Score=55.53  Aligned_cols=24  Identities=29%  Similarity=0.260  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..+++|.|++||||||+.+.|+..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCC
Confidence            448999999999999999999763

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.06  E-value=0.00039  Score=49.17  Aligned_cols=25  Identities=24%  Similarity=0.243  Sum_probs=20.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      .+...|++.|.+||||||+...|..
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3456899999999999999999976

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.05  E-value=0.00027  Score=50.19  Aligned_cols=32  Identities=13%  Similarity=0.136  Sum_probs=22.0

Q ss_pred             cccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...++.+...|+|.|.+|||||||.+.+...+
T Consensus        13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             -------CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence            33344567789999999999999999886644

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.05  E-value=0.00033  Score=48.16  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ...|+|.|.+|||||||.+.|...
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            467999999999999999999764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.04  E-value=0.00035  Score=48.43  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ...|+|.|.+|||||||...|..
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            46799999999999999999974

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.04  E-value=0.00041  Score=49.45  Aligned_cols=26  Identities=31%  Similarity=0.420  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+...|+|.|.+|||||||...|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            45678999999999999999999764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.04  E-value=0.00041  Score=53.01  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...+++|.|++|||||||.+.|+ ..
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            35689999999999999999998 54

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.04  E-value=0.00034  Score=48.60  Aligned_cols=25  Identities=16%  Similarity=0.385  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      .....|+|.|.+|||||||...|..
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            3456799999999999999999854

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.04  E-value=0.00041  Score=48.51  Aligned_cols=25  Identities=24%  Similarity=0.388  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +...|+|.|.+|||||||...|...
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            4567999999999999999999753

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.04  E-value=0.00043  Score=47.57  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ..|+|.|.+|||||||...|..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999999864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.03  E-value=0.0004  Score=48.82  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ....|+|.|.+|||||||...|..
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999999975

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.03  E-value=0.00039  Score=48.41  Aligned_cols=25  Identities=24%  Similarity=0.420  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ....|+|.|.+|||||||...|...
T Consensus        11 ~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           11 INAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4567999999999999999998753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.03  E-value=0.00045  Score=48.25  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +...|+|.|.+|||||||...|...
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Confidence            4577999999999999999999753

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.02  E-value=0.00047  Score=53.63  Aligned_cols=25  Identities=12%  Similarity=0.130  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +..++.|.|+|||||||+|..++..
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5679999999999999999999876

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.02  E-value=0.00037  Score=47.82  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +...|+|.|.+|||||||...|..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc
Confidence            346799999999999999999975

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=97.02  E-value=0.00057  Score=49.02  Aligned_cols=27  Identities=19%  Similarity=0.137  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..+...|+|.|.+|+|||||...|...
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            345678999999999999999999753

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.02  E-value=0.00044  Score=51.93  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+.|+|.|+|||||||+...|...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.01  E-value=0.00034  Score=49.37  Aligned_cols=26  Identities=12%  Similarity=0.162  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+.|+|.|.+|||||||...|...-
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            46789999999999999999997654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.01  E-value=0.00033  Score=49.47  Aligned_cols=28  Identities=21%  Similarity=0.076  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .....|+|.|.+|||||||.+.|...+.
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            3456799999999999999988876654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.00  E-value=0.00059  Score=48.26  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      .....|+|.|.+|||||||...|..
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHc
Confidence            3457899999999999999999976

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.00  E-value=0.00053  Score=53.62  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSA   52 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~   52 (215)
                      +..++.|.|+|||||||+|..++...     ...+++.
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            56789999999999999999988764     3456665

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.00  E-value=0.00074  Score=58.12  Aligned_cols=28  Identities=21%  Similarity=0.361  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      .++|.||||+|||++|+.+++.++..++
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~  517 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELL  517 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence            6999999999999999999999985544

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.00  E-value=0.00057  Score=48.21  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ....|+|.|.+|||||||...|...
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            3567999999999999999999763

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.99  E-value=0.00059  Score=52.45  Aligned_cols=26  Identities=15%  Similarity=0.320  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..+++|.|+||+||||++..++...
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999998665

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.99  E-value=0.00057  Score=54.63  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=24.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.+|++.|++||||||++..|+..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            67889999999999999999999877

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=96.98  E-value=0.00063  Score=52.69  Aligned_cols=31  Identities=23%  Similarity=0.329  Sum_probs=25.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC--CeEeeH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA   52 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~   52 (215)
                      .+++|.|++|+||||+++.+++..+  ..+++.
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~   63 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL   63 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence            4899999999999999999998875  344544

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.98  E-value=0.00051  Score=49.37  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=21.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+...|+|.|.+|||||||...|...
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34678999999999999999999764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.97  E-value=0.00058  Score=47.93  Aligned_cols=26  Identities=19%  Similarity=0.181  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ..+...|+|.|.+|||||||...|..
T Consensus        13 ~~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           13 NHQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhc
Confidence            45678899999999999999999974

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.97  E-value=0.00048  Score=47.88  Aligned_cols=26  Identities=19%  Similarity=0.291  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+...|+|.|.+|||||||...|...
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhC
Confidence            34567999999999999999998653

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.96  E-value=0.00083  Score=48.82  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...|++.|++|+||||++-.++..+
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l   30 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQ   30 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHH
Confidence            4669999999999999988888776

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.95  E-value=0.00056  Score=50.90  Aligned_cols=27  Identities=19%  Similarity=0.438  Sum_probs=22.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..+...|+|.|.+||||||+...|...
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCC
Confidence            345678999999999999999999653

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.95  E-value=0.00063  Score=46.46  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .|++.|.+|||||||...|...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.95  E-value=0.00049  Score=56.78  Aligned_cols=27  Identities=33%  Similarity=0.389  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+.-++.|.|++||||||+.+.|+-.+
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            356799999999999999999997654

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.94  E-value=0.00061  Score=54.78  Aligned_cols=31  Identities=19%  Similarity=0.238  Sum_probs=26.9

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ++-.+.-++.|.|++|||||||++.|+....
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4555778999999999999999999998874

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.94  E-value=0.00058  Score=52.68  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..++.|.|+|||||||++..++...
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            46789999999999999999998764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.94  E-value=0.00053  Score=47.88  Aligned_cols=24  Identities=17%  Similarity=0.189  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ...|+|.|.+|||||||...|...
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            467999999999999999998753

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.93  E-value=0.00051  Score=53.51  Aligned_cols=31  Identities=23%  Similarity=0.250  Sum_probs=26.8

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ++-.+.-++.|.|++||||||+.+.|+....
T Consensus        66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4445778999999999999999999998875

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.93  E-value=0.00048  Score=52.58  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +...|+|.|.||||||||...|...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4457999999999999999999653

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.93  E-value=0.00058  Score=48.17  Aligned_cols=25  Identities=16%  Similarity=0.304  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ....|+|.|.+|||||||...|...
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4567999999999999999999753

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.92  E-value=0.00051  Score=48.91  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      .+...|++.|++|||||||.+.|..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3456799999999999999999864

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.92  E-value=0.00075  Score=49.12  Aligned_cols=26  Identities=15%  Similarity=0.312  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+...|+|.|.+|||||||...|...
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45678999999999999999998653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.92  E-value=0.00051  Score=48.54  Aligned_cols=25  Identities=28%  Similarity=0.496  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +...|+|.|.+|||||||...|...
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcC
Confidence            4567999999999999999999754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.91  E-value=0.00033  Score=50.68  Aligned_cols=31  Identities=13%  Similarity=0.184  Sum_probs=25.5

Q ss_pred             cccCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..++......|+|.|.+|||||||...|...
T Consensus        22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             GGSCCCCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            3445556778999999999999999999765

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=96.91  E-value=0.00052  Score=54.40  Aligned_cols=26  Identities=23%  Similarity=0.276  Sum_probs=22.8

Q ss_pred             CCeEEEE--EcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFV--LGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i--~G~~gsGKsTla~~La~~~   45 (215)
                      .+..++|  .|++|+||||+++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            4567888  9999999999999998876

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.91  E-value=0.00056  Score=48.89  Aligned_cols=25  Identities=16%  Similarity=0.252  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ....|+|.|.+|||||||...|...
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            4567999999999999999998753

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.91  E-value=0.00051  Score=55.72  Aligned_cols=27  Identities=33%  Similarity=0.513  Sum_probs=23.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      -.+ -+++|.|++||||||+.+.|+--+
T Consensus        27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           27 FDE-LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             CCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             Ecc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence            344 789999999999999999998765

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.91  E-value=0.00045  Score=52.73  Aligned_cols=25  Identities=24%  Similarity=0.243  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ...+++|.|++||||||+.+.|+..
T Consensus       168 ~geiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          168 KGKISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEECCCCCcHHHHHHHhccc
Confidence            3568999999999999999999643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.91  E-value=0.00068  Score=48.47  Aligned_cols=26  Identities=15%  Similarity=0.180  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+...|+|.|.+|||||||...|...
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence            45778999999999999999998753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.91  E-value=0.00046  Score=57.61  Aligned_cols=27  Identities=26%  Similarity=0.412  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .++.++.|.|++||||||+++.|+.-+
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            456789999999999999999997765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.90  E-value=0.0006  Score=56.31  Aligned_cols=27  Identities=30%  Similarity=0.439  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...-++.|.|++|||||||++.|+-.+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467799999999999999999998654

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.90  E-value=0.00051  Score=59.92  Aligned_cols=26  Identities=19%  Similarity=0.433  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+..++|.|+||+||||+++.+++.+
T Consensus       190 ~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          190 TKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            34557999999999999999999987

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.89  E-value=0.00047  Score=49.00  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIV   42 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La   42 (215)
                      ....|+|.|.+|||||||...|.
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHH
Confidence            45679999999999999999985

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.89  E-value=0.00063  Score=49.01  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +...|+|.|.+|||||||...|..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            457899999999999999999964

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.88  E-value=0.0006  Score=47.80  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..|+|.|.+|||||||...|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc
Confidence            35899999999999999999753

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.88  E-value=0.0005  Score=57.63  Aligned_cols=26  Identities=27%  Similarity=0.500  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ...++|.|+||+||||+++.++..++
T Consensus        60 g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           60 KRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            35799999999999999999999875

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.88  E-value=0.00051  Score=48.50  Aligned_cols=25  Identities=16%  Similarity=0.114  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +...|+|.|.+|||||||...|...
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999764

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.88  E-value=0.00067  Score=52.23  Aligned_cols=25  Identities=24%  Similarity=0.154  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +..++.|.|+|||||||+|..++..
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5679999999999999999999864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.88  E-value=0.00055  Score=52.26  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=20.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +-.+-|+|.|++|||||||.+.|..
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhC
Confidence            3456789999999999999999854

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.87  E-value=0.00071  Score=48.70  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ....|+|.|.+|||||||...|..
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHhc
Confidence            356799999999999999999975

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.87  E-value=0.00061  Score=48.13  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +...|+|.|.+|+|||||...|...
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcC
Confidence            4578999999999999999998764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.87  E-value=0.00041  Score=57.91  Aligned_cols=27  Identities=30%  Similarity=0.443  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .++.++.|.|++||||||+++.|+.-+
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            456789999999999999999997765

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=96.86  E-value=0.0013  Score=47.32  Aligned_cols=28  Identities=18%  Similarity=0.110  Sum_probs=24.7

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+..+.+++|+.||||||.+-.++.++
T Consensus        25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           25 NQNGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CCSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            4557899999999999999999988877

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.86  E-value=0.00081  Score=48.15  Aligned_cols=26  Identities=23%  Similarity=0.431  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .....|+|.|.+|||||||...|...
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            44678999999999999999999743

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.86  E-value=0.00081  Score=48.49  Aligned_cols=26  Identities=12%  Similarity=0.171  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+...|+|.|.+|||||||...|...
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcC
Confidence            34678999999999999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.85  E-value=0.0006  Score=52.24  Aligned_cols=28  Identities=29%  Similarity=0.366  Sum_probs=23.2

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +++.+-.|+|+|.||||||||...|...
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4556678999999999999999998643

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.84  E-value=0.00069  Score=51.78  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=22.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-|+|.|+||+|||++|+.+++..
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEECCCCchHHHHHHHHHHhC
Confidence            4458899999999999999999864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.84  E-value=0.00072  Score=48.26  Aligned_cols=25  Identities=16%  Similarity=0.294  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ....|+|.|.+|||||||...|...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC
Confidence            3567999999999999999999653

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.84  E-value=0.00089  Score=54.12  Aligned_cols=26  Identities=23%  Similarity=0.445  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..+++|.|+||+||||++..++...
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999988765

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.84  E-value=0.00084  Score=53.07  Aligned_cols=25  Identities=24%  Similarity=0.258  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      .+...+.|.|+|||||||+.+.|..
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC
Confidence            4577899999999999999999987

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.84  E-value=0.00079  Score=57.96  Aligned_cols=27  Identities=15%  Similarity=0.337  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+.-++|.|+||+||||+++.|++.+
T Consensus       205 ~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          205 RRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            356678999999999999999999987

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.83  E-value=0.00048  Score=57.70  Aligned_cols=28  Identities=29%  Similarity=0.439  Sum_probs=24.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      -.+..++.|.|++||||||+++.|+.-+
T Consensus       378 i~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          378 IKPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            3467799999999999999999997655

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.83  E-value=0.00078  Score=50.65  Aligned_cols=24  Identities=33%  Similarity=0.480  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ...|+|.|.||||||||...|...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            467999999999999999999763

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.0008  Score=56.29  Aligned_cols=28  Identities=21%  Similarity=0.235  Sum_probs=24.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+.-++.|.||+||||||+.+.|+-.+
T Consensus       100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          100 PRPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            3467799999999999999999998654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.82  E-value=0.00066  Score=47.80  Aligned_cols=25  Identities=16%  Similarity=0.425  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +...|+|.|.+|||||||...|...
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            4568999999999999999999764

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.82  E-value=0.00096  Score=51.00  Aligned_cols=31  Identities=19%  Similarity=0.381  Sum_probs=25.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ...-|+|.|++|+||||+|..|.++ |+..+.
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~  173 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-GHRLVA  173 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-CCceec
Confidence            3567999999999999999999775 665553

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.82  E-value=0.00063  Score=50.73  Aligned_cols=24  Identities=21%  Similarity=0.266  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +...|++.|.||||||||...|..
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHC
Confidence            346799999999999999999975

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.81  E-value=0.00087  Score=57.70  Aligned_cols=26  Identities=27%  Similarity=0.494  Sum_probs=23.2

Q ss_pred             CCe-EEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPT-VVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~-~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +|. .++|.||||+|||++|+.+++.+
T Consensus       519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          519 RPIGSFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             SCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            343 69999999999999999999987

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.80  E-value=0.00071  Score=47.79  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ....|+|.|.+|||||||...|..
T Consensus        25 ~~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           25 FKLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhc
Confidence            355799999999999999999854

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.79  E-value=0.001  Score=47.02  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ...|+|.|.||+|||||...+...
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            467999999999999999999753

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.77  E-value=0.0011  Score=52.89  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+-|+|.|++|||||||.+.|+..
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTC
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCC
Confidence            455899999999999999999754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.76  E-value=0.0009  Score=48.35  Aligned_cols=28  Identities=21%  Similarity=0.364  Sum_probs=22.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHH-HHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCAN-IVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~-La~~~   45 (215)
                      ......|+|.|.+|||||||... +...+
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence            34567899999999999999999 55554

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.75  E-value=0.00089  Score=55.30  Aligned_cols=26  Identities=27%  Similarity=0.243  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-++.|.|++|||||||++.|+-.+
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56789999999999999999998654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.75  E-value=0.00073  Score=55.77  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+.-++.|.|++||||||+++.|+-.+
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999997654

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.75  E-value=0.001  Score=50.93  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.|.|+||||||||+..++...
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~   52 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSY   52 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999988876544

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.74  E-value=0.001  Score=47.30  Aligned_cols=24  Identities=13%  Similarity=0.253  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ...|+|.|.+|||||||...|...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            467999999999999999998653

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.73  E-value=0.00029  Score=53.86  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +..+++|.|++|||||||.+.|+.
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcc
Confidence            457899999999999999999954

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.73  E-value=0.0011  Score=52.03  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+...|+|.|.+||||||+++.+.=.+
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~i~~   57 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMRIIH   57 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHHHHh
Confidence            457789999999999999999995433

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.72  E-value=0.00075  Score=47.43  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La   42 (215)
                      .+...|+|.|.+||||||+...|.
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            467789999999999999999984

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.72  E-value=0.00092  Score=55.08  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANI   41 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~L   41 (215)
                      .+..+++|.|++|||||||++.+
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHH
Confidence            36779999999999999999994

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.72  E-value=0.0011  Score=47.45  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.+.+|.|+.||||||+..++.=-+
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l   47 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999986544

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.72  E-value=0.00096  Score=55.87  Aligned_cols=26  Identities=27%  Similarity=0.243  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-+++|.|++|||||||++.|+-.+
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            56789999999999999999998654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.71  E-value=0.00095  Score=47.56  Aligned_cols=24  Identities=13%  Similarity=0.119  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ....|+|.|.+|||||||...|..
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHhh
Confidence            456799999999999999999965

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.70  E-value=0.0012  Score=51.76  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh-----CCeEeeH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSA   52 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~-----~~~~i~~   52 (215)
                      +..++.|.|+|||||||+|..++...     ...+++.
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~  110 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA  110 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence            46689999999999999999988765     3566665

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.70  E-value=0.00037  Score=58.09  Aligned_cols=28  Identities=29%  Similarity=0.401  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      -.++.++.|.||+||||||+++.|+..+
T Consensus       364 i~~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          364 IEKGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            3467789999999999999999987655

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.70  E-value=0.0011  Score=53.63  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .++|.|+|||||||++..++..+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            89999999999999999998887

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.69  E-value=0.00087  Score=56.11  Aligned_cols=27  Identities=30%  Similarity=0.412  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...-++.|.|++||||||+.+.|+-.+
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            467799999999999999999997654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.69  E-value=0.00057  Score=47.70  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=10.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ...|+|.|.+|||||||...|..
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEEECCCCC-----------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            46799999999999999999864

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.68  E-value=0.0011  Score=57.77  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..++|.|+||+|||++|+.|++.+
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999999988

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.68  E-value=0.0013  Score=54.83  Aligned_cols=25  Identities=32%  Similarity=0.622  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+++|.|+||+||||++..+...+
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998765

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.66  E-value=0.0013  Score=49.50  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +...|+|.|.+|||||||...|...
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCC
Confidence            3467999999999999999999764

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.65  E-value=0.0014  Score=52.74  Aligned_cols=26  Identities=15%  Similarity=0.248  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..+++|.|+||+||||++..++...
T Consensus       199 ~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          199 PGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999988764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.65  E-value=0.0011  Score=49.25  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +.|++.|.||||||||...|...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            36899999999999999999754

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.65  E-value=0.0016  Score=50.47  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-+++|.|.||+||||++..++...
T Consensus        45 ~G~LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           45 KGSLVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999998775

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.63  E-value=0.0011  Score=51.92  Aligned_cols=20  Identities=30%  Similarity=0.461  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChHHHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIV   42 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La   42 (215)
                      +.+|+|++||||||+..+++
T Consensus        25 ~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            67899999999999999986

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.63  E-value=0.0014  Score=47.32  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ....|+|.|.+|+|||||..++..
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            346799999999999999999874

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.62  E-value=0.0014  Score=54.00  Aligned_cols=26  Identities=27%  Similarity=0.519  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..++.|.|++|||||||++.++...
T Consensus       280 ~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          280 KDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998655

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.62  E-value=0.00055  Score=57.18  Aligned_cols=27  Identities=41%  Similarity=0.447  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+..++.|.|++||||||+++.|+..+
T Consensus       367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          367 KPGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             CTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            457789999999999999999997655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	215
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	2e-39
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	2e-39
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	3e-39
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	1e-38
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	2e-37
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	5e-36
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	1e-35
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	2e-35
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	5e-33
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	1e-32
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	2e-32
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	3e-29
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	1e-14
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	8e-13
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	1e-12
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	2e-11
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	3e-11
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	4e-11
d1q3ta_	223	c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae	1e-10
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	4e-10
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	1e-08
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	2e-07
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	1e-05
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	1e-05
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	1e-05
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	4e-05
d1nn5a_	209	c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapi	1e-04
d1e6ca_	170	c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr	2e-04
d4tmka_	210	c.37.1.1 (A:) Thymidylate kinase {Escherichia coli	2e-04
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	6e-04
d1uf9a_	191	c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermo	0.002
d2vp4a1	197	c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr	0.003
d1deka_	241	c.37.1.1 (A:) Deoxynucleoside monophosphate kinase	0.003
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	0.003

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (332), Expect = 2e-39
 Identities = 99/190 (52%), Positives = 129/190 (67%), Gaps = 10/190 (5%)

Query: 21  PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGT-MIQNMIKEGKI 79
           P VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+       +I+  IKEGKI
Sbjct: 1   PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 60

Query: 80  VPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEA--VTKIEPEFVLFFDC 132
           VP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFDC
Sbjct: 61  VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 120

Query: 133 SEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVA 190
           + E    R L R  + GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V 
Sbjct: 121 NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVD 180

Query: 191 EVFDAVKAVF 200
           EVFD V  +F
Sbjct: 181 EVFDEVVQIF 190

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score =  132 bits (332), Expect = 2e-39
 Identities = 101/186 (54%), Positives = 131/186 (70%), Gaps = 4/186 (2%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
            KP VVFVLGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+
Sbjct: 4   SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGE 63

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEE 136
           IVPS VT+KLL+ A++ +    FL+DGFPRNEEN  ++E      ++ +FVLFFDC EE 
Sbjct: 64  IVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEV 123

Query: 137 MERRILNRN--QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFD 194
           M +R+L R    GR DDN+E+I+KRF  F   +  V+ +Y    KV+ I A + V EV++
Sbjct: 124 MTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYN 183

Query: 195 AVKAVF 200
            V+ +F
Sbjct: 184 DVENLF 189

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score =  131 bits (329), Expect = 3e-39
 Identities = 50/178 (28%), Positives = 97/178 (54%), Gaps = 4/178 (2%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + ++G PG+GKGTQ   IVE +G  H+S GD+ RA I+ G+E G   ++ + +G +VP E
Sbjct: 3   IVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDE 62

Query: 84  VTIKLLQKAM-EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
           VTI ++++ + +   ++ FL+DGFPR      A +     +    +    + +  +  ++
Sbjct: 63  VTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQ-LLADMGRKIEHVLNIQVEKEELI 121

Query: 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
            R      DN +T+  R +V +  + P++ +Y++K  +  I+  K + +VF  +  + 
Sbjct: 122 ARLTAD--DNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVIL 177

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  130 bits (326), Expect = 1e-38
 Identities = 82/187 (43%), Positives = 119/187 (63%), Gaps = 5/187 (2%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           +KK  ++FV+GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+  ++++G
Sbjct: 5   LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKG 64

Query: 78  KIVPSEVTIKLLQKAMEESGN--DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135
           ++VP E  + +L+ AM    +    FLIDG+PR  +    FE     +P  +L+ D   E
Sbjct: 65  QLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKI-GQPTLLLYVDAGPE 123

Query: 136 EMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF 193
            M +R+L R    GR DDN ETI+KR + + +++ PV+ +YE +G VRK++A   V +VF
Sbjct: 124 TMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVF 183

Query: 194 DAVKAVF 200
             V    
Sbjct: 184 SQVCTHL 190

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  126 bits (317), Expect = 2e-37
 Identities = 51/178 (28%), Positives = 94/178 (52%), Gaps = 4/178 (2%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + ++G PG+GKGTQ   IV  +G  H+S GD+ RA +K G+  G   +  +  G +VP E
Sbjct: 3   LVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDE 62

Query: 84  VTIKLLQKA-MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
           VTI ++++   ++   + FL+DGFPR      A E     +    L +    +  +  ++
Sbjct: 63  VTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALET-MLADIGRKLDYVIHIDVRQDVLM 121

Query: 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
            R    +++   T+  R +V ++   P+V +YE KG +R I+  + + +VF  ++ + 
Sbjct: 122 ERLTADDNEA--TVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELL 177

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score =  123 bits (308), Expect = 5e-36
 Identities = 51/184 (27%), Positives = 89/184 (48%), Gaps = 3/184 (1%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
           K     +LG PG+GKGTQ   + ++F   HL+ GD+LRA + SGSE G  ++  +  GK+
Sbjct: 2   KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 61

Query: 80  VPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER 139
           V  E+ ++L++K +E        +         +A        + +  L         + 
Sbjct: 62  VSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDS 121

Query: 140 RILNRNQGR---EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
            ++ R  GR    DDN + ++ R + +   + P+V+YY  +G    IDA++    VF ++
Sbjct: 122 LLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASI 181

Query: 197 KAVF 200
            A F
Sbjct: 182 LAAF 185

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  122 bits (306), Expect = 1e-35
 Identities = 88/187 (47%), Positives = 130/187 (69%), Gaps = 7/187 (3%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEG 77
            + +V+FVLGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+ G +I+N IKEG
Sbjct: 6   DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEG 65

Query: 78  KIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134
           +IVP E+T+ LL+ A+ +   +   KFLIDGFPR  +   +FE    +E +F+LFFDC E
Sbjct: 66  QIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPE 124

Query: 135 EEMERRILN--RNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV 192
           + M  R+L   +  GR DDN+E+I+KRF  F E+S+PV++Y+E K KV ++   + V +V
Sbjct: 125 DIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDV 184

Query: 193 FDAVKAV 199
           +  V+  
Sbjct: 185 YKDVQDA 191

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  121 bits (304), Expect = 2e-35
 Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 8/181 (4%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           V +LG PG+GKGTQ   + E  G   +S G+L R  I+ G++ G   +  +  G +VPS+
Sbjct: 3   VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSD 62

Query: 84  VTIKLLQKA-MEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMER 139
           +T +L+          + F++DG+PR+ E   A   +      + + VL F  SEE +  
Sbjct: 63  LTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE 122

Query: 140 RILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           R+  R   R DD  + I  R KV+ + + P+++YY  + +++ +DA   + EVF      
Sbjct: 123 RLKGRG--RADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRA 178

Query: 200 F 200
            
Sbjct: 179 L 179

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score =  115 bits (288), Expect = 5e-33
 Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 11/181 (6%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
           +     ++G PGSGKGT  + I +HF   HLS+GDLLR  +  G+E G + +  I +GK+
Sbjct: 5   RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKL 64

Query: 80  VPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER 139
           +P +V  +L+   ++      +L+DGFPR      A +   +I  + V+  +   E +++
Sbjct: 65  IPDDVMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQI--DTVINLNVPFEVIKQ 122

Query: 140 RILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           R+ +R         ET+ KR K +   + PV++YY  KG +      +   +++  V A 
Sbjct: 123 RLTDRP--------ETVVKRLKAYEAQTEPVLEYYRKKGVLETFSGTET-NKIWPHVYAF 173

Query: 200 F 200
            
Sbjct: 174 L 174

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score =  114 bits (286), Expect = 1e-32
 Identities = 54/196 (27%), Positives = 99/196 (50%), Gaps = 15/196 (7%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
            P  V + G P SGKGTQC  I   +   H+SAGDLLRAEI +GSENG   +  +++G++
Sbjct: 2   DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQL 61

Query: 80  VPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137
           VP E+ + ++++ + +    +  +L+DG+PR+     A E   +I P+  +  D  +E +
Sbjct: 62  VPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALE-TLEIRPDTFILLDVPDELL 120

Query: 138 ERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 197
             R++  +        E ++ R + + ++   ++  Y  +  + K+     V  VF  + 
Sbjct: 121 VERVVFDDT------EEKVKLRLETYYQNIESLLSTY--ENIIVKVQGDATVDAVFAKID 172

Query: 198 A----VFTPKDEKVKH 209
                +   K+E V  
Sbjct: 173 ELLGSILEKKNEMVSS 188

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score =  113 bits (283), Expect = 2e-32
 Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 11/181 (6%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + +LG P +GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E
Sbjct: 3   IILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDE 62

Query: 84  VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143
           + I L+++ + +       +         +A       I  ++VL FD  +E +  RI  
Sbjct: 63  LVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRI-- 120

Query: 144 RNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG-----KVRKIDAAKPVAEVFDAVKA 198
                +DD  ET+RKR   + + + P++ YY  +      K  K+D  KPVAEV   ++ 
Sbjct: 121 ----VKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEK 176

Query: 199 V 199
           +
Sbjct: 177 I 177

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (262), Expect = 3e-29
 Identities = 45/178 (25%), Positives = 90/178 (50%), Gaps = 8/178 (4%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + ++G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  +
Sbjct: 5   MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDD 64

Query: 84  VTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141
           + + +++  +  +   K  F++DGFPR        + + K E    L      +  +  +
Sbjct: 65  IMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLK-EQGTPLEKAIELKVDDELL 123

Query: 142 LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           + R       N + ++KR   +   + P+V +Y+  G    +DA++P A V+  +   
Sbjct: 124 VARIT-----NADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNK 176

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 66.7 bits (161), Expect = 1e-14
 Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 9/145 (6%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP 81
           ++  +G PGSGK T     +    G+ +++  D  ++ +              K+ + + 
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA---HEERDEYKYTKKKEGIV 60

Query: 82  SEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFE--AVTKIEPEFVLFFDCSEEEME 138
           + +     +  +    + K  +I     N E R A+E  A           FD    E+ 
Sbjct: 61  TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELV 120

Query: 139 RRILNRNQGREDDNVETIRKRFKVF 163
           +R   R    +   ++ +R  +K  
Sbjct: 121 KRNSKRG--TKAVPIDVLRSMYKSM 143

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 62.3 bits (150), Expect = 8e-13
 Identities = 23/188 (12%), Positives = 52/188 (27%), Gaps = 15/188 (7%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENG---TMIQNMI 74
           +  V G PG GK T  A + E           ++ GD + A             M +  +
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 75  KEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-----FVLF 129
           ++ K +  +    + ++A    G     ID              +            +  
Sbjct: 63  EKQKKLQIDAAKGIAEEA-RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFL 121

Query: 130 FDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKP 188
            +   + +  R      + R D + E++      F   +               ++    
Sbjct: 122 LEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGD 181

Query: 189 VAEVFDAV 196
            +   + +
Sbjct: 182 PSIAANEI 189

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 61.6 bits (148), Expect = 1e-12
 Identities = 21/180 (11%), Positives = 50/180 (27%), Gaps = 16/180 (8%)

Query: 17  TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE 76
           T     +  ++G  GSGK    + +        L    L          +G  + +  ++
Sbjct: 2   TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRK 61

Query: 77  GKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136
             +         +Q+  + S           +        E          ++     + 
Sbjct: 62  PWLQALNDAAFAMQRTNKVSLIV----CSALKKHYRDLLREG---NPNLSFIYLKGDFDV 114

Query: 137 MERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
           +E R+  R         + +  +F+   E           +  V  +D  +P+  V  + 
Sbjct: 115 IESRLKAR--KGHFFKTQMLVTQFETLQE-------PGADETDVLVVDIDQPLEGVVAST 165

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 58.5 bits (140), Expect = 2e-11
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 11/146 (7%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           +  + G  G GK T C  +      +    GD++   +  G         ++       +
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNIT 63

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIE---PEFVLFFDCSEEEMER 139
           ++T+  L         +  ++D     +E  A  + V           +    + EE+ R
Sbjct: 64  DLTVNFLLA------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLR 117

Query: 140 RILNRNQGREDDNVETIRKRFKVFLE 165
           R   R   +++   E   +  + F  
Sbjct: 118 RDALR--KKDEQMGERCLELVEEFES 141

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 58.5 bits (140), Expect = 3e-11
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK 75
          V+ + G  G+GKGT C  + E   +  L +G + R    +   +   + +   
Sbjct: 5  VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDA 57

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 57.7 bits (138), Expect = 4e-11
 Identities = 30/192 (15%), Positives = 67/192 (34%), Gaps = 21/192 (10%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           VV V G PG G  T     +++       Y  +S G ++    K   EN    ++ +++ 
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK--EENLVSDRDQMRKM 60

Query: 78  KIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC---- 132
                +   K+  + + E +      +D        +     +       +         
Sbjct: 61  DPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVE 120

Query: 133 --SEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV-----RKIDA 185
              +E + RR+ +  + R+ D   TI +   +   +++       A  K+       +D 
Sbjct: 121 TTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQ 180

Query: 186 AKPVAEVFDAVK 197
           A  V E+ + ++
Sbjct: 181 A--VEELTNVLR 190

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 56.9 bits (136), Expect = 1e-10
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 1/104 (0%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
           K   + + G   SGK T    I + FG+T+L  G + RA      +N   ++ +     +
Sbjct: 2   KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLAL 61

Query: 80  V-PSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI 122
           +    ++    +   +        I    R  E      A+  I
Sbjct: 62  LDQHPISFGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAI 105

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 4e-10
 Identities = 30/178 (16%), Positives = 55/178 (30%), Gaps = 26/178 (14%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + + G PG GK T    +    G  +++ GDL R E      +      ++ E +     
Sbjct: 7   ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDR----V 62

Query: 84  VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143
           V     Q        D    D FP    +              V         +  R+  
Sbjct: 63  VDELDNQMREGGVIVDYHGCDFFPERWFH-------------IVFVLRTDTNVLYERLET 109

Query: 144 RNQGRE--DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           R    +   DN++    +              Y+ +  V ++ + KP  E+ + V  +
Sbjct: 110 RGYNEKKLTDNIQCEIFQVLYE-----EATASYKEE-IVHQLPSNKP-EELENNVDQI 160

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 50.4 bits (119), Expect = 1e-08
 Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 23/183 (12%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           K   + + G PG+GK +    I     G+ HL  G L++              +   +  
Sbjct: 4   KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEY------DTELDTH 57

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           I+  +   +LL        +          +  +   F    +     V+    S E + 
Sbjct: 58  IIEEKDEDRLLDFMEPIMVSR----GNHVVDYHSSELFP---ERWFHMVVVLHTSTEVLF 110

Query: 139 RRILNRNQGRE--DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
            R+  R        +N+E   +               YE    +  +     + ++   V
Sbjct: 111 ERLTKRQYSEAKRAENMEAEIQCICEE-----EARDAYEDDIVL--VRENDTLEQMAATV 163

Query: 197 KAV 199
           + +
Sbjct: 164 EEI 166

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 26/183 (14%), Positives = 49/183 (26%), Gaps = 17/183 (9%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS-AGDLLRAEIKSGSENGTMIQNMIKEGK 78
              ++ + G PGSGK T    +    G   +    D L   IK    +G +   + +  +
Sbjct: 3   GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIK----HGRIDPWLPQSHQ 58

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
                + I               ++DG  R +   A         P   +    +  E  
Sbjct: 59  QNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTA---LARPLHYIVLRTTAAEAI 115

Query: 139 RRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 198
            R L+R  G +  +   +                   A        + K   +   +   
Sbjct: 116 ERCLDR--GGDSLSDPLVVADLHSQFAD-------LGAFEHHVLPVSGKDTDQALQSAIN 166

Query: 199 VFT 201
              
Sbjct: 167 ALQ 169

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 25/176 (14%), Positives = 53/176 (30%), Gaps = 10/176 (5%)

Query: 21  PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS----AGDLLRAEIKSGSENGTMIQNMIKE 76
           PT++ ++G P  GK      +  +  +  +          R ++    ++        +E
Sbjct: 2   PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEE 61

Query: 77  GKIVPSEVTIKLLQKAM---EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC- 132
           G  +  +  +  L        E G    + D      E RA      +       F +  
Sbjct: 62  GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESI 121

Query: 133 --SEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAA 186
               E +   I+    G  D       +  + F+         YE+  + +  D +
Sbjct: 122 CVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLS 177

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 27/187 (14%), Positives = 46/187 (24%), Gaps = 22/187 (11%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG-DLLRAEIKSGSENGTMIQNMIKEGK 78
              ++ + GG  +GK      +        L+ G D L   +    ++         +G 
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61

Query: 79  IVPSEVTIKLLQ------KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC 132
           +        L         AM  +G    + D F      +  + +         +   C
Sbjct: 62  VSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRC 121

Query: 133 SEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKID-AAKPVAE 191
                E R   R              R          VV           +D   K   E
Sbjct: 122 DGAVAEGRETAR------------GDRVAGMAAKQAYVVHEGVEYDVE--VDTTHKESIE 167

Query: 192 VFDAVKA 198
              A+ A
Sbjct: 168 CAWAIAA 174

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 2/131 (1%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRAEIKSGSENGTMIQNMIK 75
           V+ PT   + G PGSGK +  + I E        +      +             ++++K
Sbjct: 29  VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVK 88

Query: 76  EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135
                 + +T  ++ +  ++  N      G   +   + A     K     +      + 
Sbjct: 89  HVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKI 148

Query: 136 EMERRILNRNQ 146
                 + R +
Sbjct: 149 NSYLGTIERYE 159

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 13/166 (7%)

Query: 13  DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQ- 71
            +++    P VV  +G PG+GK T     +   GY H++   L   +    S    + Q 
Sbjct: 6   SSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQG 65

Query: 72  -NMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFP-----RNEENRAAFEAVTKIEPE 125
             ++ +          + +Q A +     +             N   R   +       +
Sbjct: 66  KRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSD 125

Query: 126 FVL------FFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE 165
            V+      F   +  E    IL      ++     +++ ++ F E
Sbjct: 126 MVMFSYRKQFEPPTLAEGFLEILEIPFRLQEHLDPALQRLYRQFSE 171

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 29/211 (13%), Positives = 65/211 (30%), Gaps = 32/211 (15%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           ++  ++ + G   +GK TQ   +VE        A   L    +  +E G ++ + +++  
Sbjct: 1   RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA--ELLRFPERSTEIGKLLSSYLQKKS 58

Query: 79  IVPSEVTIKLLQKAMEESGN--------------DKFLIDGFPRNEENRAAFEAVTK--- 121
            V       L      E                 D++   G               K   
Sbjct: 59  DVEDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPD 118

Query: 122 ---IEPEFVLFFDCSEEEMERRILNRNQGREDDNV-ETIRKRFKVFLESSLPVVQYYEAK 177
               +P+ VLF      +  +R    ++  E+    E   + F   ++         +  
Sbjct: 119 VGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMK---------DTT 169

Query: 178 GKVRKIDAAKPVAEVFDAVKAVFTPKDEKVK 208
              + +DA+K +  V + ++ +         
Sbjct: 170 LNWKMVDASKSIEAVHEDIRVLSEDAIATAT 200

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 22/178 (12%), Positives = 48/178 (26%), Gaps = 15/178 (8%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
            +P  +F++G  G G  T    +    GY  +                 T    +     
Sbjct: 2   TEP--IFMVGARGCGMTTVGRELARALGYEFVDTDI---------FMQHTSGMTVADVVA 50

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
                   +   +A++       ++             + +        LF    E  + 
Sbjct: 51  AEGWPGFRRRESEALQAVATPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALR 110

Query: 139 RRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
            +   +   R       I +  +  L     +  Y +    V  +DA +P A +   +
Sbjct: 111 LQASLQAHQRPTLTGRPIAEEMEAVLREREAL--YQDVAHYV--VDATQPPAAIVCEL 164

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 31/203 (15%), Positives = 65/203 (32%), Gaps = 40/203 (19%)

Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           G  G+GK T    +VE      +      R     G++    +++++ + K V  EV   
Sbjct: 9   GLEGAGKTTARNVVVETLEQLGIRDMVFTREP--GGTQLAEKLRSLLLDIKSVGDEVITD 66

Query: 88  L-------------LQKAMEESGNDKFLIDGFPRNEENRAAFEAVT-------------- 120
                         ++  ++ +  +   + G   +   +A                    
Sbjct: 67  KAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAV 126

Query: 121 --KIEPEFVLFFDCSEEEMERRILNRN--QGREDDNVETIRKRFKVFLESSLPVVQYYEA 176
                P+  L+ D + E   +R   R      E ++ +   +    +LE           
Sbjct: 127 LGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLE-------LAAQ 179

Query: 177 KGKVRKIDAAKPVAEVFDAVKAV 199
              +  IDA +P+  V DA++  
Sbjct: 180 DKSIHTIDATQPLEAVMDAIRTT 202

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.4 bits (85), Expect = 6e-04
 Identities = 21/170 (12%), Positives = 44/170 (25%), Gaps = 19/170 (11%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFG------------YTHLSAGDLLRAEIKS---- 62
               V+ + G   SGK T    + +                  +          +     
Sbjct: 20  AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEY 79

Query: 63  ---GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV 119
                +   +   + ++ K            +    S    +L D      E        
Sbjct: 80  YYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE 139

Query: 120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP 169
            +   +FV++ DC  E    R  ++ +      +    K    +LE+  P
Sbjct: 140 WRPFFDFVVYLDCPREIRFARENDQVKQNIQKFINRYWKAEDYYLETEEP 189

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 5/111 (4%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           K P ++ + G  GSGK T  A ++  +GY  L    L         EN       +    
Sbjct: 1   KHPIIIGITGNIGSGKST-VAALLRSWGYPVLDLDAL----AARARENKEEELKRLFPEA 55

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF 129
           +V   +  + L + +         ++     E  R   E ++++E   V  
Sbjct: 56  VVGGRLDRRALARLVFSDPERLKALEAVVHPEVRRLLMEELSRLEAPLVFL 106

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 26/195 (13%), Positives = 61/195 (31%), Gaps = 33/195 (16%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFG---------------YTHLSAGDLLRAEIKSG 63
            +P  V + G  GSGK T   +  ++                         + +   K  
Sbjct: 7   TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWA 66

Query: 64  SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRN---------EENRA 114
               + +   + +    P+   +K++++++  +            +         EE   
Sbjct: 67  MPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYK 126

Query: 115 AFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRED----DNVETIRKRFKVFLESSLPV 170
             E    ++ + +++   S E    RI  R +  E       ++ + +  + +L      
Sbjct: 127 FIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIH---- 182

Query: 171 VQYYEAKGKVRKIDA 185
            Q      KV  +DA
Sbjct: 183 -QRRPQSCKVLVLDA 196

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 9/98 (9%), Positives = 27/98 (27%), Gaps = 6/98 (6%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           ++F+ G   SGK T    I+ ++          ++  +           +     +    
Sbjct: 3   LIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEFE 62

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
            +          E+  +   ++     E+        +
Sbjct: 63  GIDYD------RETNLNLTKLEVITIMEQAFCYLNGKS 94

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 20/178 (11%), Positives = 41/178 (23%), Gaps = 12/178 (6%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEIKSGSENGTMIQNMIKEGKIVP 81
           V +LGG  SGK      +   F  T       + +  ++    +                
Sbjct: 10  VAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQR 69

Query: 82  SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141
                      +     D      F    E +A     + I+          +   E   
Sbjct: 70  YIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVD 129

Query: 142 LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
                       +  ++  K          +  +          +    + ++ VKAV
Sbjct: 130 DGLRSLGSQKQRQQFQQLLK----------KLLDKYKVPYIEIESPSYLDRYNQVKAV 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	215
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	100.0
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	100.0
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	100.0
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.98
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.98
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.98
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.98
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.97
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.97
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.97
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.97
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.86
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.83
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.81
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.81
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.8
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.8
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.79
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.78
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.76
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.76
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.75
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.75
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.74
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.73
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.72
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.71
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.7
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.68
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.68
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.68
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.66
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.65
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.64
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.63
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	99.6
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	99.59
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	99.58
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.57
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.53
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.44
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.44
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.43
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.43
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.41
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.39
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	99.36
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	99.28
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	99.26
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	99.26
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	99.21
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	99.21
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	99.04
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.93
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.91
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	98.64
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.63
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	98.56
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.47
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	98.42
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.37
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.35
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.35
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.33
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.3
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.29
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.27
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.26
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.24
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	98.22
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.16
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.16
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.16
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.12
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	98.11
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.11
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.09
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.06
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.0
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.99
d1okkd2	207	GTPase domain of the signal recognition particle r	97.98
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.98
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.95
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.91
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.91
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.9
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.87
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.87
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.83
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.82
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.82
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.78
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.69
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.68
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.67
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.66
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.65
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.64
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.64
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	97.64
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.63
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.61
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.61
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.6
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.59
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.57
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.56
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.56
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.56
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.55
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.54
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.53
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.52
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.52
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	97.51
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.49
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.48
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.46
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.46
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.45
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	97.44
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.43
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	97.42
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.4
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.4
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.4
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.39
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.39
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.37
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.36
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.36
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.35
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.34
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.33
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.31
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.3
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.3
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.27
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.26
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.25
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.25
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.24
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.23
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.22
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.21
d1tuea_	205	Replication protein E1 helicase domain {Human papi	97.21
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.18
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.16
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.16
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.15
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.12
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.12
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.12
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.12
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.11
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.1
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.09
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.09
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.08
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.07
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.07
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	97.07
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.07
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.06
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.06
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.06
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.06
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.05
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.02
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.01
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.0
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.99
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.99
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.99
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.98
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.97
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.97
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.96
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.95
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.95
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.94
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.93
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.93
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.92
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.92
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.92
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.91
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.91
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.91
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	96.89
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.87
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.86
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.86
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.85
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.81
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.81
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.81
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.8
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.79
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.75
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.74
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.73
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.72
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.71
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.69
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	96.68
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.67
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.64
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.64
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.62
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.6
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.6
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.58
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.54
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.51
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.5
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.46
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.41
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.4
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.38
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.37
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.36
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	96.36
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	96.36
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.34
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.31
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.19
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.11
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	96.11
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.1
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	96.09
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	96.08
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.07
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.03
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	96.01
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.01
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.95
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.89
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.78
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	95.77
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.69
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.67
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.58
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	95.41
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.35
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.23
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.11
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.08
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	94.96
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	94.89
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.72
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.71
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.69
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.6
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.43
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	94.39
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	94.38
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	94.29
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	94.27
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	94.13
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	93.76
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.72
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	93.52
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	93.48
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.18
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.1
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	93.09
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	93.07
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.94
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	92.9
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	92.9
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	92.88
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	92.75
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.68
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	92.66
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.5
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	92.33
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	92.22
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	92.07
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	91.91
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	91.25
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	91.2
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	91.18
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	91.0
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.98
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	85.93
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	84.44
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	83.77
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	80.4

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=2.5e-33  Score=201.61  Aligned_cols=187  Identities=54%  Similarity=0.924  Sum_probs=168.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (215)
                      +..++|.+|+|.|||||||||+|+.||+++|+.+++.|++++.........+.........+...+.......+......
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDA   80 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhh
Confidence            35678999999999999999999999999999999999999999988889999999999999999998888888887776


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHH
Q 028025           96 SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVV  171 (215)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (215)
                      ....++++||+|.+..+...+...  ....|+++|+|++|++++.+|+.+|  ...+..+..+.+.+|+..|+....++.
T Consensus        81 ~~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d~~e~~~~Rl~~y~~~~~~~~  160 (194)
T d1qf9a_          81 NQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVI  160 (194)
T ss_dssp             STTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHH
T ss_pred             hhcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            667899999999999988877664  4567899999999999999999887  445677789999999999999999999


Q ss_pred             HHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       172 ~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      ++|...+.+.+||++.+++++++.|.+.|+.
T Consensus       161 ~~y~~~~~~~~Id~~~~ieeV~~~I~~ii~~  191 (194)
T d1qf9a_         161 DHYNKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            9999888899999999999999999998864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=100.00  E-value=5.9e-31  Score=187.95  Aligned_cols=178  Identities=30%  Similarity=0.566  Sum_probs=161.6

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (215)
                      .+++.+.|+|.|||||||||+|+.||+++|+.+++.|+++++.+......+......+..+...+++....++...+...
T Consensus         2 ~~~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~   81 (189)
T d2ak3a1           2 ASARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNL   81 (189)
T ss_dssp             CSSCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhh
Confidence            35778899999999999999999999999999999999999999989999999999999999999999999999988877


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028025           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (215)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (215)
                      ...++++||||.+..+...+..  ...++.+|+|+++.+.+.+|+..|        .+.+.+|+..|.....++.++|.+
T Consensus        82 ~~~~~ildGfPr~~~q~~~l~~--~~~~~~vi~L~v~~~~l~~R~~~r--------~e~~~kr~~~y~~~~~~v~~~Y~~  151 (189)
T d2ak3a1          82 TQYNWLLDGFPRTLPQAEALDR--AYQIDTVINLNVPFEVIKQRLTDR--------PETVVKRLKAYEAQTEPVLEYYRK  151 (189)
T ss_dssp             TTSCEEEESCCCSHHHHHHHHT--TCCCCEEEEEECCHHHHHHHHTGS--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCcccccccchhhHHHHhhh--cCcceEEEEEeccchhhhhhcccc--------hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7889999999999999888774  567889999999999999999866        567889999999999999999998


Q ss_pred             cCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025          177 KGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       177 ~~~~~~id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                      .+.+..+|++ +.++++++|...|.....
T Consensus       152 ~~~l~~idg~-~~~eV~~~I~~~i~~~l~  179 (189)
T d2ak3a1         152 KGVLETFSGT-ETNKIWPHVYAFLQTKLP  179 (189)
T ss_dssp             HTCEEEEECS-SHHHHHHHHHHHHHTTSC
T ss_pred             cCCEEEECCC-ChHHHHHHHHHHHHHHhh
Confidence            8888889987 579999999999987654

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.2e-31  Score=191.36  Aligned_cols=184  Identities=45%  Similarity=0.836  Sum_probs=167.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-   97 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   97 (215)
                      .++.+|+|.|||||||||+|+.|++++|+.+++.+++++..+......+..+......+...+++....++..++.... 
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   85 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVD   85 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhccc
Confidence            4678999999999999999999999999999999999999999999899999999999999999999999988886654 


Q ss_pred             -CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHHHHH
Q 028025           98 -NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYY  174 (215)
Q Consensus        98 -~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (215)
                       ..++++||||.+..+...+.. ....+...+++.++.++..+|...+  ..++..+..+.+.+|+..|.+...++.++|
T Consensus        86 ~~~g~ildg~pr~~~qa~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~d~~e~i~~R~~~y~~~~~~~~~~y  164 (194)
T d3adka_          86 TSKGFLIDGYPREVKQGEEFER-KIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFY  164 (194)
T ss_dssp             TCSCEEEESCCSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHTHHHHHHH
T ss_pred             ccccceeeeccchhHHHHHHHH-HhCCccchhccccchhhhHhHhhhhcccccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence             678999999999999999998 7888999999999999999998876  456677777889999999999999999999


Q ss_pred             HhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          175 EAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       175 ~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      ...+.+..||++.+++++++.|...|+.+
T Consensus       165 ~~~~~~~~Id~~~s~~eV~~~I~~~i~~l  193 (194)
T d3adka_         165 EKRGIVRKVNAEGSVDDVFSQVCTHLDTL  193 (194)
T ss_dssp             TTTTCEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred             HhcCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            99888999999999999999999988653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.4e-31  Score=188.84  Aligned_cols=186  Identities=48%  Similarity=0.918  Sum_probs=163.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc-CCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (215)
                      +.+++.++|+|.|||||||||+|+.|++++|+.+++.+|++|..... +...+..+......+...++......+...+.
T Consensus         3 ~~~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   82 (196)
T d1ukza_           3 FSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS   82 (196)
T ss_dssp             SCTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHH
Confidence            45667889999999999999999999999999999999999987655 67888888899999999998877777665544


Q ss_pred             cc---CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchh
Q 028025           95 ES---GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLP  169 (215)
Q Consensus        95 ~~---~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~  169 (215)
                      ..   ...++++||+|.+..+...+.. ....++.+++|+++++++.+|+..|  ..++.+...+.+.+|+..|.+...+
T Consensus        83 ~~~~~~~~~~vl~g~p~~~~q~~~~~~-~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~~~~~~  161 (196)
T d1ukza_          83 DNVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMP  161 (196)
T ss_dssp             HHHHTTCCEEEEETCCCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHH
T ss_pred             hhhccCCCceeeeccchhHHHHHHHHH-hccccceeeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHH
Confidence            42   2679999999999999988888 7889999999999999999999876  4457778889999999999999999


Q ss_pred             HHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          170 VVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       170 ~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      +.++|+..+.++.||++.++++++++|...|++
T Consensus       162 l~~~y~~~~~~~~Id~~~s~eeV~~~I~~~i~~  194 (196)
T d1ukza_         162 VIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD  194 (196)
T ss_dssp             HHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            999999888889999999999999999988864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=5.4e-31  Score=186.95  Aligned_cols=172  Identities=37%  Similarity=0.671  Sum_probs=155.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  100 (215)
                      |.|+|.|||||||||+|+.|++++|+.+++.++++++....+++.+..+...+..+...++..+..++...+.... ..+
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~g   80 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccccccc
Confidence            5789999999999999999999999999999999999988899999999999999999999998888887775544 678


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhc---
Q 028025          101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK---  177 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  177 (215)
                      +++||+|.+..+...+.. ....|+++|+|++|++++.+|+..|      +..+.+.+|+..|+....++.++|...   
T Consensus        81 ~i~~g~pr~~~~~~~~~~-~~~~~~~vi~L~~~~~~l~~R~~~~------~~~e~i~~r~~~y~~~~~~v~~~y~~~~~~  153 (179)
T d1e4va1          81 FLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVKD------DQEETVRKRLVEYHQMTAPLIGYYSKEAEA  153 (179)
T ss_dssp             EEEESCCCSHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHTT------CSHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             eeecccccchHHhhhhhh-ccCCceEEEEeccchhhhhhhhccc------ccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999988 8889999999999999999999876      456788999999999999998888653   


Q ss_pred             --CcEEEEcCCCCHHHHHHHHHHhh
Q 028025          178 --GKVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       178 --~~~~~id~~~~~~e~~~~i~~~l  200 (215)
                        ..++.||++.++++++++|.+.|
T Consensus       154 ~~~~~~~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         154 GNTKYAKVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             TSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCHHHHHHHHHHHh
Confidence              35789999999999999998875

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.98  E-value=1.8e-30  Score=185.91  Aligned_cols=181  Identities=33%  Similarity=0.602  Sum_probs=160.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-C
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-N   98 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   98 (215)
                      +++.|+|.|||||||||+|+.||+++|+.+++.++++|+....++..+..+......+...+.+.+..++...+.... .
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~~   81 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCK   81 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGT
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhcccccc
Confidence            566788899999999999999999999999999999999988899999999999999999999999999988886544 7


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHH
Q 028025           99 DKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (215)
Q Consensus        99 ~~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (215)
                      .++++||||.+..+...+...   ....+.+.++++++.+.+.+|+..|. ...++..+.+.+|++.|.....++.++|.
T Consensus        82 ~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~-~~~d~~~e~i~~R~~~y~~~~~p~~~~y~  160 (190)
T d1ak2a1          82 NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL-IHSDDNKKALKIRLEAYHTQTTPLVEYYS  160 (190)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCE-ECCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999888877653   45678899999999999999999881 23456678899999999999999999999


Q ss_pred             hcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          176 AKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       176 ~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      +.+.+..||++.+++++++.|...|.
T Consensus       161 ~~~~~~~Id~~~s~eeV~~~I~~~l~  186 (190)
T d1ak2a1         161 KRGIHSAIDASQTPDVVFASILAAFS  186 (190)
T ss_dssp             HTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCCHHHHHHHHHHHHH
Confidence            88888899999999999999998875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.9e-30  Score=185.43  Aligned_cols=181  Identities=56%  Similarity=0.972  Sum_probs=159.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc-CCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc---
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES---   96 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   96 (215)
                      |++|+|.|||||||||+|+.|++++|+.+++.++++|..... .+.....+...+..+...++......+...+...   
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            789999999999999999999999999999999999988765 5677788888999999999988877777665432   


Q ss_pred             --CCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhH
Q 028025           97 --GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV  170 (215)
Q Consensus        97 --~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (215)
                        ...++++||||.+..+...+...  ....++.+++++++.+++.+|..+|  ..++..+..+.+.+++..|++...++
T Consensus        81 ~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~~y~~~~~~l  160 (194)
T d1teva_          81 NAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPI  160 (194)
T ss_dssp             CTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHHHHHHHHHHH
Confidence              36799999999999988887764  3456778999999999999999988  66788888999999999999999999


Q ss_pred             HHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          171 VQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       171 ~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      .++|...+.++.||++.+++++++.|.+.|.
T Consensus       161 ~~~y~~~~~~~~IDa~~s~eeV~~~I~~il~  191 (194)
T d1teva_         161 IDLYEEMGKVKKIDASKSVDEVFDEVVQIFD  191 (194)
T ss_dssp             HHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence            9999988888899999999999999998875

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.98  E-value=2.8e-30  Score=183.52  Aligned_cols=176  Identities=32%  Similarity=0.629  Sum_probs=158.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  100 (215)
                      |.|+|.|||||||||+|+.|++++|+.+++.+++++..+....+.+..+...+..+...+.+....++...+.... ..+
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANG   80 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCcccccc
Confidence            5799999999999999999999999999999999999988888888889999999999999999999988876654 678


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (215)
                      +++||+|.+..+...+...   ....|+++++|+++.+++.+|+.+|  ++..+..+.+.+|+..|++...++.++|.+ 
T Consensus        81 ~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r--~r~~~~~~~i~~rl~~y~~~~~~l~~~y~~-  157 (181)
T d2cdna1          81 FILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR--GRADDTDDVILNRMKVYRDETAPLLEYYRD-  157 (181)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH--CCTTCSHHHHHHHHHHHHHHTTTHHHHTTT-
T ss_pred             EEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhccc--ccccchhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            9999999998888777653   4568999999999999999999998  778888899999999999999999888864 


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          178 GKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       178 ~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                       .++.||++.++++++++|.+.|.
T Consensus       158 -~~~~Id~~~s~eeV~~~I~~~l~  180 (181)
T d2cdna1         158 -QLKTVDAVGTMDEVFARALRALG  180 (181)
T ss_dssp             -TEEEEECCSCHHHHHHHHHHHTT
T ss_pred             -CeEEEECCCCHHHHHHHHHHHhC
Confidence             48899999999999999998875

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.6e-30  Score=180.81  Aligned_cols=171  Identities=26%  Similarity=0.564  Sum_probs=153.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC--CC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--ND   99 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   99 (215)
                      +.|+|.|||||||||+|+.|++++|+.+++.+++++......+..+..+...+..+...+.......+...+....  ..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKN   82 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCccccC
Confidence            5788999999999999999999999999999999999988899999999999999999999988888887776643  67


Q ss_pred             eEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028025          100 KFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (215)
Q Consensus       100 ~~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (215)
                      ++++||+|.+..+...+..+   ....|+++|+|+++++++.+|+..+         +.+.+|+..|+....++.++|.+
T Consensus        83 g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~---------~~~~~r~~~y~~~~~~v~~~y~~  153 (180)
T d1akya1          83 GFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNA---------DALKKRLAAYHAQTEPIVDFYKK  153 (180)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSH---------HHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             CEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhccccc---------ccccchHHHHHHHHHHHHHHHHh
Confidence            89999999998887765543   5678999999999999999999866         56788999999999999999998


Q ss_pred             cCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          177 KGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       177 ~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      .+.++.||++.+++++++.|...|.
T Consensus       154 ~~~~~~Id~~~~~eeV~~~I~~~l~  178 (180)
T d1akya1         154 TGIWAGVDASQPPATVWADILNKLG  178 (180)
T ss_dssp             HTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHc
Confidence            8889999999999999999998875

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.97  E-value=1.7e-29  Score=179.62  Aligned_cols=176  Identities=32%  Similarity=0.636  Sum_probs=157.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  100 (215)
                      |.|+|.|||||||||+|+.||+++|+.+++.+++++......++.+..+...+..+...++.....++...+.... ..+
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~   80 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCDNG   80 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhcccccccc
Confidence            5799999999999999999999999999999999999988888999999999999999999999999988886655 678


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (215)
                      +++||+|.+..+...+.+.   ....+.+.++++++.+.+.+|+..+      +.++.+.+|++.|.+...++.++|.+.
T Consensus        81 ~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~------~~~e~i~~R~~~y~~~~~~i~~~y~~~  154 (182)
T d1s3ga1          81 FLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTAD------DNPDTVTNRLEVNMNQTAPLLAFYDSK  154 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT------CSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhcc------chhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999998888877653   4456778999999999999998754      457789999999999999999999988


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          178 GKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       178 ~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      +.++.||++.+++++++.|...|+..
T Consensus       155 ~~~~~Id~~~~~eeV~~~I~~il~~~  180 (182)
T d1s3ga1         155 EVLVNINGQKDIKDVFKDLDVILQGN  180 (182)
T ss_dssp             TCEEEEECSSCHHHHHHHHHHHHTCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            89999999999999999999999754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.97  E-value=2.2e-30  Score=185.36  Aligned_cols=179  Identities=30%  Similarity=0.612  Sum_probs=154.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-   97 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   97 (215)
                      ++|+.|+|.|||||||||+|+.|++++|+.+++.+++++..+.........+...+..+...+.......+........ 
T Consensus         1 ~~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   80 (189)
T d1zaka1           1 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA   80 (189)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhccc
Confidence            4689999999999999999999999999999999999999988888888888899999999998877666665554432 


Q ss_pred             -CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028025           98 -NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (215)
Q Consensus        98 -~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (215)
                       ..++++||+|.+..+...+.. ....|+.+|+|+++++++.+|+..|  .    ..+.+.+|+..|++...++.++|. 
T Consensus        81 ~~~~~vid~~~~~~~q~~~l~~-~~~~p~~~i~L~~~~e~l~~R~~~~--~----~~e~~~~rl~~y~~~~~~l~~~y~-  152 (189)
T d1zaka1          81 QENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVFD--D----TEEKVKLRLETYYQNIESLLSTYE-  152 (189)
T ss_dssp             HHTCEEEESCCCSHHHHHHHHT-TTCCCSEEEEEECCHHHHHHHHTTT--C----CTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             ccCcEEeeccchhhHHHhhhhh-cccccchheeechhhhhhhhhcccc--c----hHHHHHHHHHHHHHHHHHHHHHhC-
Confidence             568999999999999999988 7788999999999999999999766  2    235678899999998888877774 


Q ss_pred             cCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025          177 KGKVRKIDAAKPVAEVFDAVKAVFTPKDEK  206 (215)
Q Consensus       177 ~~~~~~id~~~~~~e~~~~i~~~l~~~~~~  206 (215)
                       +.++.||++.++++++++|.+.|.....+
T Consensus       153 -~~~~~Id~~~~idev~~~I~~~l~~il~~  181 (189)
T d1zaka1         153 -NIIVKVQGDATVDAVFAKIDELLGSILEK  181 (189)
T ss_dssp             -CCEEEEECSSCHHHHHHHHHHHHHHHHHH
T ss_pred             -CCEEEEECCCCHHHHHHHHHHHHHHHhhh
Confidence             45789999999999999999998766554

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=3e-28  Score=173.07  Aligned_cols=175  Identities=31%  Similarity=0.635  Sum_probs=154.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCe
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  100 (215)
                      |.|+|.|||||||||+|+.||+++|+.+++.+++++......+..+..+...+..+...++......+...+.... ..+
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNG   80 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhhhcC
Confidence            5699999999999999999999999999999999999888888888999999999999999988888877765544 678


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (215)
                      +++++++........+...   ....+++.++|.++.+.+.+|+..+      +..+.+.+|+..|++...++.++|.+.
T Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~------~~~e~~~~Rl~~y~~~~~~l~~~y~~~  154 (182)
T d1zina1          81 FLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTAD------DNEATVANRLEVNMKQMKPLVDFYEQK  154 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT------CSHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccc------cchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999887766655553   4577889999999999999999866      456789999999999999999999988


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          178 GKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       178 ~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      +.+..||++.++++++++|.+.|.+
T Consensus       155 ~~~~~Id~~~~~eeV~~~I~~~L~~  179 (182)
T d1zina1         155 GYLRNINGEQDMEKVFADIRELLGG  179 (182)
T ss_dssp             TCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHh
Confidence            8899999999999999999998864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=4.1e-20  Score=129.12  Aligned_cols=161  Identities=14%  Similarity=0.141  Sum_probs=104.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHH-------HHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-------IKLLQ   90 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~   90 (215)
                      ...+.+|+|+|+|||||||+|+.|++++++.+++.|++.......          ....+........       ...+.
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~   72 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIE----------KMASGEPLNDDDRKPWLQALNDAAF   72 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHH----------HHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHhh----------hhccCcceehhhhHHHHHHHHHHHH
Confidence            456889999999999999999999999999999987764332111          1111122221111       11122


Q ss_pred             HHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhH
Q 028025           91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV  170 (215)
Q Consensus        91 ~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (215)
                      .....  +..++.+...........+ . ....+..+|||++|++++.+|+.+|  +......+.+..++..+...    
T Consensus        73 ~~~~~--~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~v~l~~~~e~~~~Rl~~R--~~~~~~~~~~~~~~~~~e~~----  142 (171)
T d1knqa_          73 AMQRT--NKVSLIVCSALKKHYRDLL-R-EGNPNLSFIYLKGDFDVIESRLKAR--KGHFFKTQMLVTQFETLQEP----  142 (171)
T ss_dssp             HHHHH--CSEEEEECCCCSHHHHHHH-H-TTCTTEEEEEEECCHHHHHHHHHTS--TTCCCCHHHHHHHHHHCCCC----
T ss_pred             HHHhc--cCceEeeccchHHHHHHHH-H-HhCCCceEEeecCCHHHHHHHHHhC--cCCCccHHHHHhhHHHhhCC----
Confidence            22211  5566665443334433333 3 5566678999999999999999988  54445566666655544321    


Q ss_pred             HHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          171 VQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       171 ~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                         +.....++++|++.+++++++.|...|+
T Consensus       143 ---~~~e~~~~~id~~~~~e~v~~~i~~~lk  170 (171)
T d1knqa_         143 ---GADETDVLVVDIDQPLEGVVASTIEVIK  170 (171)
T ss_dssp             ---CTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             ---CcccCCEEEEeCCCCHHHHHHHHHHHhc
Confidence               1223357889999999999999998875

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.83  E-value=5.3e-20  Score=128.61  Aligned_cols=161  Identities=17%  Similarity=0.288  Sum_probs=98.5

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccC-CCeE
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF  101 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  101 (215)
                      .|+|+|+|||||||+|+.||+++|+.+++.|++++...  +....+.+..   .+.    ..........+.... ...+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~--g~~i~ei~~~---~g~----~~~~~~~~~~l~~~~~~~~~   74 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTVADVVAA---EGW----PGFRRRESEALQAVATPNRV   74 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCHHHHHHH---HHH----HHHHHHHHHHHHHHCCSSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhh--hhhhhhhhcc---cch----HHHHHHHHHHHHhhccccce
Confidence            36788999999999999999999999999998876542  3333322211   111    111222222222222 3334


Q ss_pred             EEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025          102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (215)
Q Consensus       102 iidg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (215)
                      +..+  .+........+.. .    ..+|||++|.+.+.+|+..|  ...++........+.+........++   |.+.
T Consensus        75 ~~~~~~~~~~~~~~~~l~~-~----~~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~~l---Y~~~  146 (170)
T d1e6ca_          75 VATGGGMVLLEQNRQFMRA-H----GTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREAL---YQDV  146 (170)
T ss_dssp             EECCTTGGGSHHHHHHHHH-H----SEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred             ecccccchhhhHHHHhhhc-c----ceeEEEecCchhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHHHHH---HHHc
Confidence            4433  3233333444444 2    35899999999999999876  33444444445555555444444444   4443


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          178 GKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       178 ~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      .. +++|++.++++++++|.+.|+
T Consensus       147 a~-~~Id~~~~~~eiv~~Ii~~Lr  169 (170)
T d1e6ca_         147 AH-YVVDATQPPAAIVCELMQTMR  169 (170)
T ss_dssp             CS-EEEETTSCHHHHHHHHHHHTT
T ss_pred             CC-EEEcCCCCHHHHHHHHHHHcC
Confidence            33 577888999999999988764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=7.1e-19  Score=126.90  Aligned_cols=175  Identities=17%  Similarity=0.259  Sum_probs=100.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---CCeE--e-------eHHHHHHHHHHcCCCc-----HHHHHHHHHcCCCCCH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTH--L-------SAGDLLRAEIKSGSEN-----GTMIQNMIKEGKIVPS   82 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~---~~~~--i-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~   82 (215)
                      ++++|+|+|++||||||+++.|++.+   |+..  +       ..++.++.........     .......+....  ..
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~   78 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAA--RV   78 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHH--HH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccchhhhHHHHhccccccccccchHHHHHHHHHH--HH
Confidence            45789999999999999999999988   3322  2       1244444443332110     000000000000  00


Q ss_pred             HHHHHHHHHHHHccCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCC
Q 028025           83 EVTIKLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQG  147 (215)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~iidg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r-~~~  147 (215)
                      ......+...+..  +..+|.|.|..+            ..+...+...  ..+.||++|||++|++++.+|+.+| ...
T Consensus        79 ~~~~~~i~~~l~~--~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R~~~~  156 (210)
T d4tmka_          79 QLVETVIKPALAN--GTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELD  156 (210)
T ss_dssp             HHHHHTHHHHHHT--TCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHc--CCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhccccc
Confidence            0112223334432  788999965321            2222222221  3578999999999999999999998 222


Q ss_pred             CCCCcHHHHHHHHH-HHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCcc
Q 028025          148 REDDNVETIRKRFK-VFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (215)
Q Consensus       148 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~  205 (215)
                      +......+..+++. .|.       +.+....++++||++.+++++.+.|...+....+
T Consensus       157 ~~~~~~~~~~~~v~~~y~-------~~~~~~~~~~~IDa~~~~e~v~~~I~~~i~~~l~  208 (210)
T d4tmka_         157 RIEQESFDFFNRTRARYL-------ELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVK  208 (210)
T ss_dssp             TTTTSCHHHHHHHHHHHH-------HHHHTCTTEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccHHHHHHHHHHHH-------HHHhcCCCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence            22222223333332 232       2234445689999999999999999888765443

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.4e-19  Score=126.81  Aligned_cols=172  Identities=15%  Similarity=0.217  Sum_probs=99.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---CCeEee---------HHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLS---------AGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK   87 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~---~~~~i~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (215)
                      ++.+|+|+|+.||||||+++.|++.+   |+.++.         .+.+++..+.............+.....   .....
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r---~~~~~   78 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANR---WEQVP   78 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHH---HTTHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCcccchhhhhhhhcccccchhhhhhHHHHHH---HHHHH
Confidence            56899999999999999999999988   443332         2334444433322222211111110000   00023


Q ss_pred             HHHHHHHccCCCeEEEeCCCCC------------HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHH
Q 028025           88 LLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET  155 (215)
Q Consensus        88 ~~~~~~~~~~~~~~iidg~~~~------------~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~  155 (215)
                      .+..++..  +..||+|.|..+            ..+...+.. ..+.||++|||++|++++.+|...+  +...+..+.
T Consensus        79 ~i~~~l~~--g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~-~~~~PDl~i~Ld~~~e~~~~R~~~~--~~~~E~~~~  153 (209)
T d1nn5a_          79 LIKEKLSQ--GVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV-GLPKPDLVLFLQLQLADAAKRGAFG--HERYENGAF  153 (209)
T ss_dssp             HHHHHHHT--TCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGT-TSBCCSEEEEEECCHHHHHHC-------CTTCSHHH
T ss_pred             hHHHHhhc--ccceeecchhhhhhhhhhhccCccHHHHHHHhc-cCCCCceeeeecccHHHHhhhhccc--ccccccHHH
Confidence            34444443  788999986422            122222222 5678999999999999999998765  333344443


Q ss_pred             HHHHHHHHhhcchhHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025          156 IRKRFKVFLESSLPVVQYYEA-KGKVRKIDAAKPVAEVFDAVKAVFTPKDEK  206 (215)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~e~~~~i~~~l~~~~~~  206 (215)
                      +.+....|.+.       +.. +.++++||++.++++++++|...+......
T Consensus       154 ~~r~~~~Y~~l-------~~~~~~~~~~IDa~~~~e~V~~~I~~~v~~~l~~  198 (209)
T d1nn5a_         154 QERALRCFHQL-------MKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIAT  198 (209)
T ss_dssp             HHHHHHHHHHH-------TTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-------HHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHHh
Confidence            33332333321       222 236899999999999999998888766543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.80  E-value=2.2e-19  Score=127.52  Aligned_cols=174  Identities=14%  Similarity=0.153  Sum_probs=107.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHH-------HHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE-------VTIKLL   89 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~   89 (215)
                      ++|+|+|+|||||||+++.|++.++     +.+++.++..+..............     ....+..       .....+
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~   76 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDE-----MRKLSVEKQKKLQIDAAKGI   76 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHH-----HTTSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhh-----ccccchhhcccCHHHHHHHH
Confidence            5789999999999999999999985     3466777877665444221110000     0111110       112223


Q ss_pred             HHHHHccCCCeEEEeCCCCCHHH------HHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHH
Q 028025           90 QKAMEESGNDKFLIDGFPRNEEN------RAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKV  162 (215)
Q Consensus        90 ~~~~~~~~~~~~iidg~~~~~~~------~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~~~~~~~~~~~~~  162 (215)
                      ...........+++|++......      ...... ....|++++||+++++++.+|+.+| ...+.....+.+.+++..
T Consensus        77 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~r~~~~r~~~~~~~~~~~~~~  155 (194)
T d1nksa_          77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVI-TEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETIN  155 (194)
T ss_dssp             HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHH-HHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHH
T ss_pred             HHHHHHhCCCcEEEEccCchHHHHHHHHhHHHHHH-hhhccccceEEecCHHHHHHHHHHhhhcccccchHHHHHHHHHH
Confidence            33333444778888865432110      001111 2346889999999999999999987 455666667777777666


Q ss_pred             HhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      +.+........+...+..++++++.++++++++|.+.|+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~ik  194 (194)
T d1nksa_         156 FARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSMK  194 (194)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             HHHhHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence            655544444444444444555568999999999998774

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.80  E-value=2.3e-19  Score=125.41  Aligned_cols=166  Identities=15%  Similarity=0.161  Sum_probs=96.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (215)
                      .++|+|+|+|||||||+|+.|+++++..++..+|.++..+..+............    .........+...+.  .+..
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~   75 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLA----LTWKNITDLTVNFLL--AQND   75 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHH----HHHHHHHHHHHHHHH--TTCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHHH----HHHHHHHHHHHHHHh--cCCC
Confidence            3689999999999999999999999887666556666554332222111110000    001112333333333  2788


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHhc
Q 028025          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (215)
Q Consensus       101 ~iidg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (215)
                      +++|+..........+..+   ....+..+++|.++++++.+|+.+|  ++.....+...+++..+..        ....
T Consensus        76 ~iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~--------~~~~  145 (176)
T d2bdta1          76 VVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALR--KKDEQMGERCLELVEEFES--------KGID  145 (176)
T ss_dssp             EEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTS--CC----CGGGGHHHHHHHH--------TTCC
T ss_pred             cccccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhC--CCchhhhHHHHHHHHHHHh--------CCCC
Confidence            9999876655444333221   3344556899999999999999988  4332222222222222211        1112


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          178 GKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       178 ~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                      ...++.+++.+++++.+.|..++.+
T Consensus       146 ~~~~id~~~~~~~~~~~~I~~i~~~  170 (176)
T d2bdta1         146 ERYFYNTSHLQPTNLNDIVKNLKTN  170 (176)
T ss_dssp             TTSEEECSSSCGGGHHHHHHHHHHC
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhc
Confidence            2233444467999999999988864

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.79  E-value=4.6e-19  Score=122.60  Aligned_cols=156  Identities=13%  Similarity=0.199  Sum_probs=87.6

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEEE
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI  103 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii  103 (215)
                      |+|+|+|||||||+++.||+++|+.+++.|++++...  +..........   +.. ........+...+... ...++.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~--g~~i~~~~~~~---g~~-~~r~~e~~v~~~l~~~-~~~v~~   75 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF--NQKVSEIFEQK---REN-FFREQEQKMADFFSSC-EKACIA   75 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH--TSCHHHHHHHH---CHH-HHHHHHHHHHHHHTTC-CSEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHH--hhhhhhHHHhh---hhc-cchhhhhhhchhhhhc-cccccc
Confidence            7888999999999999999999999999998876542  22232222111   110 0111123333344332 333333


Q ss_pred             eCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCC-CcHHHHHHHHHHHhhcchhHHHHHHhcCcEE
Q 028025          104 DGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGRED-DNVETIRKRFKVFLESSLPVVQYYEAKGKVR  181 (215)
Q Consensus       104 dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (215)
                      -|-.  ......     ....+.+|||++|.+++.+|+..| ...++- .....+. .+   ....   ...|.+... +
T Consensus        76 ~~g~--~~~~~~-----l~~~~~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~-~l---~~~r---~~~Y~~~ad-~  140 (161)
T d1viaa_          76 TGGG--FVNVSN-----LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAK-KL---YNER---LSKYEQKAN-F  140 (161)
T ss_dssp             CCTT--GGGSTT-----GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHH-HH---HHHH---HHHHHHHCS-E
T ss_pred             cccc--hhhHHH-----HHhCCeEEEeccchHHHHHHHccccccccccccCchHHH-HH---HHHH---HHHHHhhCC-E
Confidence            3211  111111     123457999999999999999776 222221 1122222 11   1111   122444333 4


Q ss_pred             EEcC-CCCHHHHHHHHHHhhC
Q 028025          182 KIDA-AKPVAEVFDAVKAVFT  201 (215)
Q Consensus       182 ~id~-~~~~~e~~~~i~~~l~  201 (215)
                      ++|+ +.++++++++|.+.++
T Consensus       141 ~Idt~~~s~eei~~~I~~~i~  161 (161)
T d1viaa_         141 ILNIENKNIDELLSEIKKVIK  161 (161)
T ss_dssp             EEECTTCCHHHHHHHHHHHHC
T ss_pred             EEECCCCCHHHHHHHHHHHhC
Confidence            4554 6799999999998764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.78  E-value=1.1e-18  Score=123.30  Aligned_cols=173  Identities=14%  Similarity=0.217  Sum_probs=101.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHH---HHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV---TIKLLQKAM   93 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~   93 (215)
                      ++|+|.|+|||||||+++.|+++++     ..+++.++..+............     ..........   ........+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDR-----DQMRKMDPETQKRIQKMAGRKI   76 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSG-----GGGSSCCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhh-----hhhhhhhchhhHHHHHHHHHHH
Confidence            5899999999999999999999984     45667788777665442211100     0001111111   111111111


Q ss_pred             Hc-cCCCeEEEeCCCCCHHH------HHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHhh
Q 028025           94 EE-SGNDKFLIDGFPRNEEN------RAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLE  165 (215)
Q Consensus        94 ~~-~~~~~~iidg~~~~~~~------~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~  165 (215)
                      .. ..+..+++|+++.....      ...+.. ....|+.+|||+++++++.+|+.+| .+++.....+.+. +...++.
T Consensus        77 ~~~~~~~~vl~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~~~~~~~~~~~~~~~~-~~~~~~~  154 (190)
T d1khta_          77 AEMAKESPVAVDTHSTVSTPKGYLPGLPSWVL-NELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIE-QHQFMNR  154 (190)
T ss_dssp             HHHHTTSCEEEECCSEEEETTEEEESSCHHHH-HHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHH-HHHHHHH
T ss_pred             HHHhCCCeEEECCcccchHHHHHHHhhhhhhh-hhccccceeeecCCHHHHHHHHHHhccccCCcccHHHHH-HHHHHHH
Confidence            11 12788999987643110      011111 3356889999999999999999887 4455555554443 3333333


Q ss_pred             cchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          166 SSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       166 ~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      ........+......++++++.++++++++|.+.|+
T Consensus       155 ~~~~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~lk  190 (190)
T d1khta_         155 CAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVLR  190 (190)
T ss_dssp             HHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence            333333333333333455668899999999998874

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.76  E-value=1.8e-17  Score=115.74  Aligned_cols=163  Identities=14%  Similarity=0.199  Sum_probs=89.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC-CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHH---HHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL---LQKAM   93 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   93 (215)
                      .++++.|+|+|+|||||||+|+.|+++++ +.+++.+++............ .     .............+   +...+
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~i   75 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDT-E-----LDTHIIEEKDEDRLLDFMEPIM   75 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC------------CCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhhhhhHHH-h-----hcccchHHHHHHHHHHHHHhhh
Confidence            46788999999999999999999999997 566666665544321111110 0     01112222222222   22222


Q ss_pred             HccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHH
Q 028025           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY  173 (215)
Q Consensus        94 ~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (215)
                      .  .+.+++++++....-        ....++.+|||++|++++.+|+.+|  +.......+ ....+.+..........
T Consensus        76 ~--~~~~~~~~~~~~~~~--------~~~~~~~vI~L~~~~e~l~~Rl~~R--~~~~~~~~~-~~~~e~~~~~~~~~~~~  142 (174)
T d1y63a_          76 V--SRGNHVVDYHSSELF--------PERWFHMVVVLHTSTEVLFERLTKR--QYSEAKRAE-NMEAEIQCICEEEARDA  142 (174)
T ss_dssp             T--SSSEEEEECSCCTTS--------CGGGCSEEEEEECCHHHHHHHHHHT--TCCHHHHHH-HHHHHHTTHHHHHHHHH
T ss_pred             h--hcccccccHHHHHHH--------HHhcCceEEEEECCHHHHHHHHHhC--CCccccccc-chhhhhhhhhHHHHHHh
Confidence            2  267888887654221        1223567899999999999999988  332111110 00111111111122223


Q ss_pred             HHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          174 YEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       174 ~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      |..  .+++.+++.+++++.+.|.+.+.
T Consensus       143 ~~~--~~~i~~~~~t~ee~~~~V~~I~~  168 (174)
T d1y63a_         143 YED--DIVLVRENDTLEQMAATVEEIRE  168 (174)
T ss_dssp             SCG--GGEEEEECSSHHHHHHHHHHHHH
T ss_pred             hcC--CEEEECCCCCHHHHHHHHHHHHH
Confidence            322  23444456789998888776653

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=3.4e-18  Score=118.69  Aligned_cols=158  Identities=17%  Similarity=0.224  Sum_probs=86.9

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEEE
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI  103 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii  103 (215)
                      |+++|+|||||||+++.||+++|+.+++.|+++....  +....+.+..   .+.........+.+...+..  ...++.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~--g~~i~~~~~~---~g~~~~r~~e~~~~~~~~~~--~~~vi~   76 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRSIADIFAT---DGEQEFRRIEEDVVRAALAD--HDGVLS   76 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSCHHHHHHH---HCHHHHHHHHHHHHHHHHHH--CCSEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhh--hhhhhhhhhh---hhHHHHHHHHhhhhhhcccc--cccccc
Confidence            5666999999999999999999999999998876542  2222222211   11111122223334443433  233444


Q ss_pred             eCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCC--CCCcHHHHHHHHHHHhhcchhHHHHHHhcCcE
Q 028025          104 DGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGR--EDDNVETIRKRFKVFLESSLPVVQYYEAKGKV  180 (215)
Q Consensus       104 dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (215)
                      .|....... ..+.. .  ....+|||.++++++.+|+.++ .++.  .....+.+.+.+.    ...   ..|.+... 
T Consensus        77 ~gg~~~~~~-~~~~~-l--~~~~~I~L~~~~~~~~~R~~~~~~Rpll~~~~~~e~~~~l~~----eR~---~~Y~~~ad-  144 (165)
T d2iyva1          77 LGGGAVTSP-GVRAA-L--AGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMA----KRA---PLYRRVAT-  144 (165)
T ss_dssp             CCTTGGGSH-HHHHH-H--TTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHH----HHH---HHHHHHCS-
T ss_pred             ccccccccc-ccccc-c--cccceeeeeccchhhhhcccccccchhccCccHHHHHHHHHH----HHH---HHHHhhCC-
Confidence            332211111 11111 1  1235799999999999999765 2221  1122233332221    111   23444443 


Q ss_pred             EEEcC-CCCHHHHHHHHHHhh
Q 028025          181 RKIDA-AKPVAEVFDAVKAVF  200 (215)
Q Consensus       181 ~~id~-~~~~~e~~~~i~~~l  200 (215)
                      ++||+ ..++++++++|...|
T Consensus       145 ~~Idt~~~s~~ei~~~Ii~~L  165 (165)
T d2iyva1         145 MRVDTNRRNPGAVVRHILSRL  165 (165)
T ss_dssp             EEEECSSSCHHHHHHHHHTTS
T ss_pred             EEEECCCCCHHHHHHHHHhcC
Confidence            45565 569999999987653

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=7.9e-17  Score=112.25  Aligned_cols=102  Identities=23%  Similarity=0.269  Sum_probs=78.5

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (215)
                      ..++|.+|+++|+|||||||+|+.|++..++.+++.|++...                        ......++..+.. 
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~------------------------~~~~~~~~~~l~~-   64 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSW------------------------QRCVSSCQAALRQ-   64 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSH------------------------HHHHHHHHHHHHT-
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHH------------------------HHHHHHHHHHHHC-
Confidence            346789999999999999999999999999999999775321                        1124455555554 


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           97 GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                       +..+|+|+.......+..|..+  .......++++.+|.+++.+|+..|
T Consensus        65 -g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R  113 (172)
T d1yj5a2          65 -GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR  113 (172)
T ss_dssp             -TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred             -CCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHh
Confidence             7899999988777776666553  2222345899999999999999988

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=1.4e-17  Score=118.29  Aligned_cols=166  Identities=19%  Similarity=0.218  Sum_probs=99.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHH-HHcCCCC----------CHH-----
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM-IKEGKIV----------PSE-----   83 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~-----   83 (215)
                      .|++|+|+|++||||||+|+.| +.+|+.+++.|++.+................ ...+...          ...     
T Consensus         2 ~p~IIgitG~~gSGKstva~~l-~~~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l   80 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALL-RSWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKAL   80 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHH-HHTTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH-HHCCCeEEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCchhhhhh
Confidence            5899999999999999999999 5589999999988777654432111000000 0000000          000     


Q ss_pred             ------HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHH
Q 028025           84 ------VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR  157 (215)
Q Consensus        84 ------~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~  157 (215)
                            .....+...........+++|+.......       ....+|.+||++||+++..+|+.+|  .  ....+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~vi~e~~~~~~~~-------~~~~~d~vI~v~a~~e~r~~Rl~~R--~--~~~~~~~~  149 (191)
T d1uf9a_          81 EAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKG-------WEGRLHGTLLVAAPLEERVRRVMAR--S--GLSREEVL  149 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTTT-------CGGGSSEEEEECCCHHHHHHHHHTT--T--CCTTHHHH
T ss_pred             hhhhhHHHHHHHHhhhhhcccceEEEEeecccccc-------ccccceeEEEEecchhhHHHHHHhc--c--cchHHHHH
Confidence                  00122222333344778888874422111       2234788999999999999999987  2  23344444


Q ss_pred             HHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          158 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      .++...    .+... ...... ++|+++.+++++..+|..+++.+
T Consensus       150 ~~~~~q----~~~~~-~~~~aD-~vI~N~~s~~~l~~~v~~il~~l  189 (191)
T d1uf9a_         150 ARERAQ----MPEEE-KRKRAT-WVLENTGSLEDLERALKAVLAEL  189 (191)
T ss_dssp             HHHTTS----CCHHH-HHHHCS-EEECCSSHHHHHHHHHHHHHHSC
T ss_pred             HHHHhC----CCHHH-HHHhCC-EEEECCCCHHHHHHHHHHHHHHc
Confidence            443321    12211 122233 46778889999999999988654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.74  E-value=5.8e-17  Score=110.72  Aligned_cols=134  Identities=17%  Similarity=0.283  Sum_probs=85.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh-CCeEeeHHHHHHHHHHcCCCcH----HHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENG----TMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~-~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (215)
                      ..+|+|+|+|||||||+|+.|++.. ++.+++.+++.+..........    .......       .......+...+..
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~   74 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIV-------TGMQFDTAKSILYG   74 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHH-------HHHHHHHHHHHHTS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhHHH-------HHHHHHHHHHHHHh
Confidence            4689999999999999999986554 7899999887665533322111    1100000       11223444444433


Q ss_pred             cC-CCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028025           96 SG-NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF  163 (215)
Q Consensus        96 ~~-~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~  163 (215)
                      .. +..+|+|+..........+..+  ....+..+|+|++|.+++.+|+..|  +......+.+.+.+..|
T Consensus        75 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~  143 (152)
T d1ly1a_          75 GDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSM  143 (152)
T ss_dssp             CSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC--GGGCCCHHHHHHHHHHH
T ss_pred             hccCCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHcc--CCCCCCHHHHHHHHHHH
Confidence            22 6689999877666665555443  3334556899999999999999988  44444555555554444

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.73  E-value=6.5e-17  Score=115.99  Aligned_cols=165  Identities=16%  Similarity=0.122  Sum_probs=99.1

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCH-----HH-----------
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-----EV-----------   84 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----------   84 (215)
                      .++|+|+|++||||||+|+.|. .+|+.++++|.+.++.+..+......+...+......++     ..           
T Consensus         2 ~~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~~   80 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED   80 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhhhhh
Confidence            4789999999999999999995 689999999999888766555444433333322111111     10           


Q ss_pred             -----------HHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028025           85 -----------TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (215)
Q Consensus        85 -----------~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~  153 (215)
                                 ....+...........+++|+-. ..+.  .    ....+|.+|++.+|+++..+|+..|    ...+.
T Consensus        81 ~~~l~~i~hp~v~~~~~~~~~~~~~~~vv~e~~l-l~e~--~----~~~~~d~ii~v~~~~~~r~~R~~~R----~~~s~  149 (205)
T d1jjva_          81 KLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPL-LIEN--K----LTALCDRILVVDVSPQTQLARSAQR----DNNNF  149 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTT-TTTT--T----CGGGCSEEEEEECCHHHHHHHHC---------CH
T ss_pred             hhHhhcccCHHHHHHHHHHHhhccCCeEEEEecc-cccc--c----hhhhhhheeeecchHHHHHHHHHhc----CCchH
Confidence                       01222233333335677888532 2221  1    2235788999999999999999977    34556


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      +.+.+++.....    ... ...... ++|+++++.++..+.+.+.+..+
T Consensus       150 e~~~~~~~~Q~~----~~~-k~~~aD-~vI~N~~~l~~~~~~l~~~i~~i  193 (205)
T d1jjva_         150 EQIQRIMNSQVS----QQE-RLKWAD-DVINNDAELAQNLPHLQQKVLEL  193 (205)
T ss_dssp             HHHHHHHHHSCC----HHH-HHHHCS-EEEECCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC----HHH-HHHhCC-EEEECCCChHHHHHHHHHHHHHH
Confidence            777777654221    111 122222 56777778888777776655544

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.72  E-value=1.6e-17  Score=120.71  Aligned_cols=42  Identities=33%  Similarity=0.483  Sum_probs=38.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK   61 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~   61 (215)
                      ++++|.|.|||||||||+|+.||++||+.|+++|+++|....
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~a~   43 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATY   43 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHHH
Confidence            457899999999999999999999999999999999998653

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.71  E-value=6e-17  Score=112.80  Aligned_cols=106  Identities=18%  Similarity=0.232  Sum_probs=68.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeE
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (215)
                      +.|+|+|+|||||||+|+.|++++|+.+++.++.++..........      ...............+.....   ..+.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~   75 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDE------EYDCPILDEDRVVDELDNQMR---EGGV   75 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCCCCS------SSSCCCBCHHHHHHHHHHHHH---HCCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccchhH------HhhhhhHHHHHHHHHhhhhhh---cCCc
Confidence            4688999999999999999999999999999998876422211110      011122223333333333332   3345


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028025          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus       102 iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      .++++.....        .....+.+|||+++++++.+|+.+|
T Consensus        76 ~~~~~~~~~~--------~~~~~~~~i~l~~~~~~~~~Rl~~r  110 (173)
T d1rkba_          76 IVDYHGCDFF--------PERWFHIVFVLRTDTNVLYERLETR  110 (173)
T ss_dssp             EEECSCCTTS--------CGGGCSEEEEEECCHHHHHHHHHHT
T ss_pred             ccchhHHHHH--------HHhcCCCcceecCCHHHHHHHHHhc
Confidence            5555442211        1123457899999999999999988

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.70  E-value=2.7e-17  Score=114.97  Aligned_cols=166  Identities=16%  Similarity=0.181  Sum_probs=92.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH-HHHHHHHHHcCCCc--HHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA-GDLLRAEIKSGSEN--GTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (215)
                      .+.+|+|.|+|||||||+|+.|++++|..++.. +|.++..+......  .........    .........+.....  
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--   76 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNR----MIMQIAADVAGRYAK--   76 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHH----HHHHHHHHHHHHHHH--
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHH----HHHHHHHHHHHHHHh--
Confidence            467899999999999999999999998766543 24444433221110  000000000    000011122222222  


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028025           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (215)
Q Consensus        97 ~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (215)
                      .+..+++|+..... ....+.  ....+..++||.++++++.+|+.+|  +............+.......       ..
T Consensus        77 ~~~~vi~~~~~~~~-~~~~~~--~~~~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~~-------~~  144 (176)
T d1zp6a1          77 EGYFVILDGVVRPD-WLPAFT--ALARPLHYIVLRTTAAEAIERCLDR--GGDSLSDPLVVADLHSQFADL-------GA  144 (176)
T ss_dssp             TSCEEEECSCCCTT-TTHHHH--TTCSCEEEEEEECCHHHHHHHHHTT--CTTSCCCHHHHHHHHHHTTCC-------GG
T ss_pred             cCCCeEecccccHH-HHHHHH--hcccccccccCCCCHHHHHHHHHhC--CCccccchhhHHHHHHHHhhc-------cc
Confidence            27788989865432 223333  3345567899999999999999998  433322222222222222211       12


Q ss_pred             cCcEEEEcCCCCHHHHHHHHHHhhCCC
Q 028025          177 KGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (215)
Q Consensus       177 ~~~~~~id~~~~~~e~~~~i~~~l~~~  203 (215)
                      ....++.+++.+++++++.|.+.++..
T Consensus       145 ~~~~~idt~~~~~ee~~~~I~~~l~~~  171 (176)
T d1zp6a1         145 FEHHVLPVSGKDTDQALQSAINALQSG  171 (176)
T ss_dssp             GGGGEEECTTCCTTTTTTTTHHHHHHT
T ss_pred             ccCEEEECCCCCHHHHHHHHHHHHHcC
Confidence            222345556779999999998887643

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=3.9e-16  Score=112.10  Aligned_cols=167  Identities=18%  Similarity=0.157  Sum_probs=101.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcC-----CCCCHHHH---------
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEVT---------   85 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---------   85 (215)
                      ++++|+|+|++||||||+|+.|+ .+|+.+++.|.+.+..+..+......+.+.+...     .......+         
T Consensus         2 mk~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~   80 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE   80 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred             CCEEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhHH
Confidence            45789999999999999999995 6899999999999887665554444433322211     11111111         


Q ss_pred             ---------HHHHH----HHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028025           86 ---------IKLLQ----KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (215)
Q Consensus        86 ---------~~~~~----~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~  152 (215)
                               ...+.    ..........++++........       ....++.+|++.||+++..+|+.+|  +  ...
T Consensus        81 ~~~~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~~ll~e~~-------~~~~~~~iI~V~a~~e~r~~R~~~R--~--~~~  149 (208)
T d1vhta_          81 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENS-------LYKKANRVLVVDVSPETQLKRTMQR--D--DVT  149 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECTTTTTTT-------GGGGCSEEEEEECCHHHHHHHHHHH--H--TCC
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhcCCcceeeeeccccc-------ccccCCEEEEEeCCHHHHHHHHHHh--h--hhh
Confidence                     11122    2222223556677652211111       2234778999999999999999988  2  234


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCc
Q 028025          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (215)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~  204 (215)
                      .+.+..++.....    .... ..... ++|+++++++++.++|.++++...
T Consensus       150 ~~~~~~~~~~Q~~----~~~k-~~~aD-~vI~N~~~le~l~~~v~~l~~~~l  195 (208)
T d1vhta_         150 REHVEQILAAQAT----REAR-LAVAD-DVIDNNGAPDAIASDVARLHAHYL  195 (208)
T ss_dssp             HHHHHHHHHHSCC----HHHH-HHHCS-EEEECSSCTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC----HHHH-HHhCC-EEEECCCCHHHHHHHHHHHHHHHH
Confidence            5566666554221    1111 22222 667787899999888877765443

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=2.4e-16  Score=113.59  Aligned_cols=178  Identities=12%  Similarity=0.216  Sum_probs=89.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC--eEee-------HHHHHHHHHHcCC-CcHHHHHHHHHcCCCCCHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLS-------AGDLLRAEIKSGS-ENGTMIQNMIKEGKIVPSEVTIKL   88 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~--~~i~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   88 (215)
                      +++++|+|+|+.||||||+++.|++.+..  ..+.       .+.+++..+.... .........+-...   .......
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~---r~~~~~~   77 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSAN---RWEIVDK   77 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEESSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHH---HHTTHHH
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEEECCCCchHhHhHHHhhhhccccccchHHHHHHHHH---HHHHHHH
Confidence            57899999999999999999999999853  2222       1333444332211 11111111000000   0000112


Q ss_pred             HHHHHHccCCCeEEEeCCCCCH--------------HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028025           89 LQKAMEESGNDKFLIDGFPRNE--------------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (215)
Q Consensus        89 ~~~~~~~~~~~~~iidg~~~~~--------------~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~  154 (215)
                      +...+.  .+..||.|.|..+.              .+...+.. ..+.||++|||+++++....|...+.. ...+..+
T Consensus        78 i~~~l~--~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~-~~~~PDl~i~Ld~~~~~~~~r~~~~~~-~~~e~~~  153 (214)
T d1tmka_          78 IKKDLL--EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDV-GLLKPDLTLFLSTQDVDNNAEKSGFGD-ERYETVK  153 (214)
T ss_dssp             HHHHHH--TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGT-TSBCCSEEEEEECC----------CCS-STTCCHH
T ss_pred             HHHHHh--cCCeeEecCccccchHhhhhcccchHHHHHHHHHHh-cCCCcceehhccccHHHHHHHhcccch-hhhhhHH
Confidence            333333  27899999764321              11111111 357999999999999988888665511 1223333


Q ss_pred             HHHHHH-HHHhhcchhHHHHHHhcCcEEEEcC-CCCHHHHHHHHHHhhCCCccc
Q 028025          155 TIRKRF-KVFLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTPKDEK  206 (215)
Q Consensus       155 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l~~~~~~  206 (215)
                       +.+++ ..|.+.....  .......++++|+ +.+++++.+.|...++...+.
T Consensus       154 -~~~~v~~~Y~~l~~~~--~~~~~~~~~iID~s~~~~eev~~~I~~~v~~~l~~  204 (214)
T d1tmka_         154 -FQEKVKQTFMKLLDKE--IRKGDESITIVDVTNKGIQEVEALIWQIVEPVLST  204 (214)
T ss_dssp             -HHHHHHHHHHHHHHHH--HHTTCTTEEEEECTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             -HHHHHHHHHHHHHHHh--hhhCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence             33333 2333321111  1122346888886 579999998888777765543

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=8e-16  Score=110.39  Aligned_cols=164  Identities=15%  Similarity=0.191  Sum_probs=87.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCC----HHHH---------
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP----SEVT---------   85 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------   85 (215)
                      ++|+|+|+.||||||+++.|++.+   |+.++....     ...+.+.+.........+....    ....         
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~-----P~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~   75 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF-----PRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRA   75 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES-----SCTTTCHHHHHHHHHHTTCSTTGGGCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEec-----CCCCCccchhhhhhhccccccccccchHHHHHHHHHHHH
Confidence            589999999999999999999988   343332100     0001111122211111111100    0000         


Q ss_pred             --HHHHHHHHHccCCCeEEEeCCCCCHH-----------------HHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           86 --IKLLQKAMEESGNDKFLIDGFPRNEE-----------------NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        86 --~~~~~~~~~~~~~~~~iidg~~~~~~-----------------~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                        .........  .+..+|+|.+..+..                 +...+...  ..+.||++|||+++++++.+|+.+|
T Consensus        76 ~~~~~~~~~~~--~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~e~~~~Ri~~R  153 (208)
T d1gsia_          76 GAVHTIQGLCR--GYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGR  153 (208)
T ss_dssp             TTHHHHHHHHH--HSSEEEEESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCSEEEEECCCHHHHHHHHHHH
T ss_pred             HHHHhHHHHhh--hcccccccchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCceeEEecccHHHHHHHHHhh
Confidence              111111111  278999997653211                 11111111  3478999999999999999999988


Q ss_pred             ---cCCCCC---CcHHHHHHHHHHHhhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHH
Q 028025          145 ---NQGRED---DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV  196 (215)
Q Consensus       145 ---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i  196 (215)
                         ......   +...++.+++...+..   +... .....+++||++.+++++.++|
T Consensus       154 ~~~~~~~~~d~~e~~~~y~~~~~~~Y~~---~~~~-~~~~~~~vIDa~~~~e~V~~~i  207 (208)
T d1gsia_         154 AQRDPGRARDNYERDAELQQRTGAVYAE---LAAQ-GWGGRWLVVGADVDPGRLAATL  207 (208)
T ss_dssp             HHHCTTCCCCTTTTCHHHHHHHHHHHHH---HHHH-TTTSEEEEECTTCCHHHHHHHH
T ss_pred             hcccccccccchhhHHHHHHHHHHHHHH---HHHh-cCCCCEEEEeCCCCHHHHHHhh
Confidence               111111   1123444444332221   1110 1123589999999999999876

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=2.5e-16  Score=114.22  Aligned_cols=42  Identities=29%  Similarity=0.517  Sum_probs=38.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK   61 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~   61 (215)
                      .+++|+|.|||||||||+|+.|+++||+.|+++|+++|+...
T Consensus         2 ~~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~a~   43 (225)
T d1ckea_           2 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLAL   43 (225)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHHH
Confidence            356999999999999999999999999999999999998654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.65  E-value=8.1e-16  Score=107.31  Aligned_cols=163  Identities=15%  Similarity=0.095  Sum_probs=84.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEe--eHHHHHHHHHHcCCCcHHHHHHHHHcC-CCC-CHH--HHHHHHH---H
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSGSENGTMIQNMIKEG-KIV-PSE--VTIKLLQ---K   91 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~--~~~~~~~---~   91 (215)
                      .++|+|+|+|||||||+|+.|++.++..++  +.|. +........ ...........+ ... ...  .....+.   .
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS-LIEAMPLKM-QSAEGGIEFDADGGVSIGPEFRALEGAWAEGVV   80 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH-HHHHSCGGG-GTSTTSEEECTTSCEEECHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecch-hhccccccc-cchhHHhhhhcccchhHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999986554  4433 333211100 000000000000 000 000  1111111   1


Q ss_pred             HHHccCCCeEEEeCCC-CCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhH
Q 028025           92 AMEESGNDKFLIDGFP-RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV  170 (215)
Q Consensus        92 ~~~~~~~~~~iidg~~-~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (215)
                      .+.. .+..++++... ........+...........|+|.||++++.+|+..|  +....  .........+.      
T Consensus        81 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R--~~~~~--~~~~~~~~~~~------  149 (178)
T d1qhxa_          81 AMAR-AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETAR--GDRVA--GMAAKQAYVVH------  149 (178)
T ss_dssp             HHHH-TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHT--SSSCT--THHHHHTTGGG------
T ss_pred             HHHh-hccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhc--CCcch--hhhhhhhhhhh------
Confidence            1222 25666666533 3333333333324455667899999999999999988  22211  11111111111      


Q ss_pred             HHHHHhcCcEEEEcC-CCCHHHHHHHHHHhh
Q 028025          171 VQYYEAKGKVRKIDA-AKPVAEVFDAVKAVF  200 (215)
Q Consensus       171 ~~~~~~~~~~~~id~-~~~~~e~~~~i~~~l  200 (215)
                          .....-++||+ ..+++|+++.|...+
T Consensus       150 ----~~~~~dl~IDts~~s~ee~a~~I~~~v  176 (178)
T d1qhxa_         150 ----EGVEYDVEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             ----TTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred             ----cCCCCCEEEECCCCCHHHHHHHHHHhc
Confidence                11112255666 669999999998765

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.9e-15  Score=104.12  Aligned_cols=159  Identities=13%  Similarity=0.122  Sum_probs=82.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEE
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (215)
                      .|+|+|||||||||+|+.||+++++.+++.++............   .......  . ............ .......++
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~~~~~~---~~~~~~~--~-~~~~~~~~~~~~-~~~~~~~~~   76 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGW---VFDLEGE--E-GFRDREEKVINE-LTEKQGIVL   76 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHH---HHHHHHH--H-HHHHHHHHHHHH-HHTSSSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhcccccc---hhhhhhh--h-HHHHHHHHHHHh-hccccceEe
Confidence            58889999999999999999999999999987765542221111   1111000  0 000111111111 112244444


Q ss_pred             EeCCCCC--HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc----cCCCCCCcHHHHHHHHHHHhhcchhHHHHHHh
Q 028025          103 IDGFPRN--EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----NQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (215)
Q Consensus       103 idg~~~~--~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (215)
                      ..+....  ......+..     ....+++.+++..+..|...+    ...........+...+...       ...|..
T Consensus        77 ~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~y~~  144 (169)
T d1kaga_          77 ATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANER-------NPLYEE  144 (169)
T ss_dssp             ECCTTGGGSHHHHHHHHH-----HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHH-------HHHHHH
T ss_pred             eccchhhhhhhhhHHhhh-----cceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHHHHh-------hhhhhc
Confidence            4443221  222222222     346899999999998888765    1112222333333332222       222444


Q ss_pred             cCcEEEEcC-CCCHHHHHHHHHHhhC
Q 028025          177 KGKVRKIDA-AKPVAEVFDAVKAVFT  201 (215)
Q Consensus       177 ~~~~~~id~-~~~~~e~~~~i~~~l~  201 (215)
                      ... +++|+ +.+++|++++|.+.|+
T Consensus       145 ~~d-~~Idt~~~s~ee~v~~Ii~~le  169 (169)
T d1kaga_         145 IAD-VTIRTDDQSAKVVANQIIHMLE  169 (169)
T ss_dssp             HCS-EEC-----CHHHHHHHHHHHHC
T ss_pred             cCC-EEEECCCCCHHHHHHHHHHHhC
Confidence            333 45666 6699999999998874

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.63  E-value=1.2e-15  Score=109.21  Aligned_cols=167  Identities=14%  Similarity=0.146  Sum_probs=94.5

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh----C--CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHH
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL   89 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~----~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (215)
                      +...++++|+|+|.|||||||+|+.|++++    +  ..+++. |.+|..+.....+........-        .....+
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldg-D~iR~~l~~~l~ys~~~r~~~~--------~r~~~~   89 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG-DNIRFGLNKDLGFSEADRNENI--------RRIAEV   89 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH-HHHTTTTTTTCCSSHHHHHHHH--------HHHHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcc-hHHHHhhcCCCCCChhHHHHHH--------HHHHHH
Confidence            456789999999999999999999999876    2  334555 5566544332222111110000        001112


Q ss_pred             HHHHHccCCCeEEEeCCCCCHHHHHHHHHh--------cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028025           90 QKAMEESGNDKFLIDGFPRNEENRAAFEAV--------TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK  161 (215)
Q Consensus        90 ~~~~~~~~~~~~iidg~~~~~~~~~~~~~~--------~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~  161 (215)
                      ...+.. .+..+|++........+....++        ....+.+.|||+||.+++.+|..++          ...+...
T Consensus        90 a~~~~~-~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~----------~y~~~~~  158 (208)
T d1m7ga_          90 AKLFAD-SNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKG----------LYKKARE  158 (208)
T ss_dssp             HHHHHH-TTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTC----------HHHHHHH
T ss_pred             HHHHhc-cCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhccc----------chhhhhc
Confidence            222222 27888888755555544444432        1234567899999999999997654          0111111


Q ss_pred             HHhhcchhHHHHHHhc-CcEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025          162 VFLESSLPVVQYYEAK-GKVRKIDA-AKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       162 ~~~~~~~~~~~~~~~~-~~~~~id~-~~~~~e~~~~i~~~l~~  202 (215)
                      .....+..+...|+.+ ...+++|+ ..++++.+++|.++|..
T Consensus       159 ~~~~~~~gvd~~ye~P~~~dl~Idt~~~s~~e~~~~Ii~~L~~  201 (208)
T d1m7ga_         159 GVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT  201 (208)
T ss_dssp             TSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             CcccceecccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHH
Confidence            1111111122223332 23456665 56999999999998864

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.3e-16  Score=113.44  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      .|++|+|+|+.||||||+++.|+++++-..+
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            4889999999999999999999999975444

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=9.4e-15  Score=103.84  Aligned_cols=35  Identities=26%  Similarity=0.249  Sum_probs=30.5

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      ....+|++|+|+|+.||||||+++.|++.++...+
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            34678999999999999999999999999976544

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.9e-15  Score=110.75  Aligned_cols=80  Identities=14%  Similarity=0.255  Sum_probs=51.9

Q ss_pred             CCCcEEEEEecCHHHHHHHHhhccCCCCCC---c---HHHHHHHHHHHhhcchhH-HHHHHhcCcEEEEcCCCCHHHHHH
Q 028025          122 IEPEFVLFFDCSEEEMERRILNRNQGREDD---N---VETIRKRFKVFLESSLPV-VQYYEAKGKVRKIDAAKPVAEVFD  194 (215)
Q Consensus       122 ~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~---~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~id~~~~~~e~~~  194 (215)
                      +.||++|||+++++++.+|+.+|  ++..+   .   .+.+.+.+..|....... ........++++||++.+++++++
T Consensus       151 ~~Pdl~i~Ld~~pe~~~~Ri~~r--~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID~~~~ie~v~~  228 (241)
T d1p5zb_         151 LELDGIIYLQATPETCLHRIYLR--GRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYE  228 (241)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHH
T ss_pred             CCCceeeeeccCHHHHHHHHHhh--cchhhhcCCHHHHHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEECCCCHHHHHH
Confidence            57999999999999999999888  33221   2   233333333332221110 011223347899999999999999


Q ss_pred             HHHHhhCCC
Q 028025          195 AVKAVFTPK  203 (215)
Q Consensus       195 ~i~~~l~~~  203 (215)
                      +|.+.++..
T Consensus       229 ~i~~~i~~~  237 (241)
T d1p5zb_         229 SLVEKVKEF  237 (241)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998887543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.6e-16  Score=110.71  Aligned_cols=112  Identities=25%  Similarity=0.340  Sum_probs=65.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC----------eEeeHHHHHHHHHHcCCCcHHHHHHHHHcC-------CCCCH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY----------THLSAGDLLRAEIKSGSENGTMIQNMIKEG-------KIVPS   82 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~   82 (215)
                      .|.+|+|+|++||||||+|+.|++.++.          .+++.|++++..      .... ......+       .....
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~------~~~~-~~~~~~~~~~~~~~~~~~~   73 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL------TSEQ-KAKALKGQFNFDHPDAFDN   73 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC------CHHH-HHHHHTTCSCTTSGGGBCH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecccccccc------chhh-hhhhhhcccccCCcHHHHH
Confidence            3789999999999999999999999863          456666654210      0000 0000000       11112


Q ss_pred             HHHHHHHHHHHHc----------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHH
Q 028025           83 EVTIKLLQKAMEE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR  140 (215)
Q Consensus        83 ~~~~~~~~~~~~~----------------------~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R  140 (215)
                      +.+.+.+......                      .+...++++|.+....  ..+..    .+|+.|||+++++++.+|
T Consensus        74 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiveg~~~l~~--~~l~~----~~D~~i~v~~~~~~~~~R  147 (213)
T d1uj2a_          74 ELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS--QEVRD----LFQMKLFVDTDADTRLSR  147 (213)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS--HHHHH----HCSEEEEEECCHHHHHHH
T ss_pred             HHHHhhhhhhhcCCcccccccccccccccCceEEecccceEEecchhhhcc--HHHHh----hhheeeeecCCHHHHHHH
Confidence            2222333222211                      1255788888653222  11222    268999999999999999


Q ss_pred             Hhhc
Q 028025          141 ILNR  144 (215)
Q Consensus       141 ~~~r  144 (215)
                      ...|
T Consensus       148 ~~~R  151 (213)
T d1uj2a_         148 RVLR  151 (213)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8877

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.53  E-value=4.5e-14  Score=99.05  Aligned_cols=163  Identities=18%  Similarity=0.207  Sum_probs=95.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc---CC----CcHHHHHHHHHcCCCCCHH----------
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GS----ENGTMIQNMIKEGKIVPSE----------   83 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~----------   83 (215)
                      +.+|+|+||+||||||+++.|.+++.-..++.....|.....   +.    ...+.+......+.++...          
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~g   81 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSG   81 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCccccc
Confidence            468999999999999999999998742222221111211000   00    1123344444444332110          


Q ss_pred             HHHHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028025           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF  163 (215)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~  163 (215)
                      .....+...+..  +..++++..   ......+.. ....+..++++.++.+++.+|+.+|  ++  +..+.+.+|+..+
T Consensus        82 ~~~~~~~~~~~~--g~~~i~~~~---~~g~~~l~~-~~~~~~~i~i~~~s~e~L~~RL~~R--g~--~~~e~I~~Rl~~~  151 (182)
T d1znwa1          82 TLAQPVRAAAAT--GVPVLIEVD---LAGARAIKK-TMPEAVTVFLAPPSWQDLQARLIGR--GT--ETADVIQRRLDTA  151 (182)
T ss_dssp             EEHHHHHHHHHH--TCCEEEECC---HHHHHHHHH-HCTTSEEEEEECSCHHHHHHHHHTT--SC--SCHHHHHHHHHHH
T ss_pred             cccchhhhhhhc--CCccccccc---cchhhhhhh-cCcceeEEeeecccHHHHHHHhhhc--Cc--chHHHHHHHHHHH
Confidence            012333333333  677888843   455556666 6667765666667889999999988  44  5677888888765


Q ss_pred             hhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhh
Q 028025          164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF  200 (215)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l  200 (215)
                      ....    . +......+++|.  ++++.++++.++|
T Consensus       152 ~~e~----~-~~~~fD~vI~Nd--dle~a~~~l~~iI  181 (182)
T d1znwa1         152 RIEL----A-AQGDFDKVVVNR--RLESACAELVSLL  181 (182)
T ss_dssp             HHHH----H-GGGGSSEEEECS--SHHHHHHHHHHHH
T ss_pred             HHHH----h-hHhcCCEEEECc--CHHHHHHHHHHHh
Confidence            4321    1 222223455543  7999999998765

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=7.6e-13  Score=93.26  Aligned_cols=167  Identities=16%  Similarity=0.214  Sum_probs=95.5

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCeE-eeHHHHHHHHHHc---C----CCcHHHHHHHHHcCCCCCHHH--------HHH
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIKS---G----SENGTMIQNMIKEGKIVPSEV--------TIK   87 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~~~~-i~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~--------~~~   87 (215)
                      |+|+||+||||||+++.|++.++-.+ .......|.....   +    .-..+.+......+.++....        ...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~~~   82 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKE   82 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecccc
Confidence            78999999999999999999986221 1110101100000   0    011233444444444332111        133


Q ss_pred             HHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcc
Q 028025           88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESS  167 (215)
Q Consensus        88 ~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~  167 (215)
                      .+...+..  +..++++..   ......+.. ....+..++++..+.+++.+|+.+|  +  .+..+.+..|+..+....
T Consensus        83 ~v~~~~~~--g~~~~~~~~---~~~~~~l~~-~~~~~~~I~i~~~~~e~l~~RL~~R--~--~~~~e~i~~rl~~~~~~~  152 (190)
T d1lvga_          83 AVRAVQAM--NRICVLDVD---LQGVRSIKK-TDLCPIYIFVQPPSLDVLEQRLRLR--N--TETEESLAKRLAAARTDM  152 (190)
T ss_dssp             HHHHHHHT--TCEEEEECC---HHHHHHHTT-SSCCCEEEEEECSCHHHHHHHHHHH--T--CSCHHHHHHHHHHHHHHT
T ss_pred             hhhhhhcC--CCceeecch---Hhhhhhhhh-ccccceEEEEecchHHHHHHHHhhc--c--ccchHHHHHHHHHHHHHH
Confidence            44444433  678888853   344444554 5666766666666789999999988  3  456788888887655432


Q ss_pred             hhHHHHHHhc--CcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025          168 LPVVQYYEAK--GKVRKIDAAKPVAEVFDAVKAVFTPKDEK  206 (215)
Q Consensus       168 ~~~~~~~~~~--~~~~~id~~~~~~e~~~~i~~~l~~~~~~  206 (215)
                      ..    ....  ..++++|+  +.++.++++..+|.+..++
T Consensus       153 ~~----~~~~~~fd~iI~N~--dle~a~~~l~~iI~~~~~k  187 (190)
T d1lvga_         153 ES----SKEPGLFDLVIIND--DLDKAYATLKQALSEEIKK  187 (190)
T ss_dssp             TG----GGSTTTCSEEEECS--SHHHHHHHHHHHTHHHHHH
T ss_pred             Hh----hhhcCCCCEEEECc--CHHHHHHHHHHHHHHHHhc
Confidence            21    1111  13455554  6889999998887654443

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.6e-14  Score=99.00  Aligned_cols=164  Identities=13%  Similarity=0.085  Sum_probs=72.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHc----CCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS----GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (215)
                      ++++|+|+|+|||||||+|+.|+++++..+++.+.+.......    .............       ......+..... 
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-   89 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV-------RRIAEVAKLFAD-   89 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHH-------HHHHHHHHHHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHH-------HHHHHHHHHHHh-
Confidence            5789999999999999999999999975444432222221111    1111100000000       001122222222 


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcchhHHHH
Q 028025           96 SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY  173 (215)
Q Consensus        96 ~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (215)
                       .+..++.++..........+...  ........+++.++.....++..++  ..... .......+...       ...
T Consensus        90 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~-~~~~~~~~~~~-------~~~  158 (195)
T d1x6va3          90 -AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG--LYKKA-RAGEIKGFTGI-------DSE  158 (195)
T ss_dssp             -TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEECC----------------------------------------C
T ss_pred             -cCCccccccccchHHHHHHHHHHHhccccccccccchhheeeehhhccch--hhhhh-hhhhhhhhhhh-------ccc
Confidence             26677777655554444444432  3334444556666666666666544  10000 00001111111       111


Q ss_pred             HHhc-CcEEEEcC-CCCHHHHHHHHHHhhCC
Q 028025          174 YEAK-GKVRKIDA-AKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       174 ~~~~-~~~~~id~-~~~~~e~~~~i~~~l~~  202 (215)
                      |+.+ ...++||+ ..++++++++|.+.|++
T Consensus       159 ~e~~~~~dl~IdT~~~s~ee~~~~Il~~l~~  189 (195)
T d1x6va3         159 YEKPEAPELVLKTDSCDVNDCVQQVVELLQE  189 (195)
T ss_dssp             CCCCSSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Confidence            2211 12366776 56999999999998864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=2.2e-12  Score=90.60  Aligned_cols=165  Identities=15%  Similarity=0.262  Sum_probs=94.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhCCe-EeeHHHHHHHHHHc---C----CCcHHHHHHHHHcCCCCCHH--------HHHH
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFGYT-HLSAGDLLRAEIKS---G----SENGTMIQNMIKEGKIVPSE--------VTIK   87 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~~~-~i~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~--------~~~~   87 (215)
                      |+|+||+|||||||++.|++++.-. .+......|.....   +    .-..+.+......+.++...        ....
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~~   83 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA   83 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecchh
Confidence            8899999999999999999987421 11100000100000   0    01223444444444443211        0134


Q ss_pred             HHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcc
Q 028025           88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESS  167 (215)
Q Consensus        88 ~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~  167 (215)
                      .+...+..  +..+++|..+   .....+.......+..++++..+.+++.+|+.+|  ++  +..+.+.+|+..+... 
T Consensus        84 ~i~~~~~~--g~~~i~~~~~---~~~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~R--g~--~~~~~I~~Rl~~~~~e-  153 (186)
T d1gkya_          84 SVKQVSKS--GKTCILDIDM---QGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGR--GT--ETEESINKRLSAAQAE-  153 (186)
T ss_dssp             HHHHHHHH--TSEEEEECCH---HHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHH--SC--SCHHHHHHHHHHHHHH-
T ss_pred             hHHHHhcC--CCeEEecchH---HHHHHHHHhhcccceEEEecCCcHHHHHHHHHhh--cc--chhHHHHHHHHHHHHH-
Confidence            44444443  7889998653   3334444311235666788888999999999988  44  5567888888765432 


Q ss_pred             hhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCC
Q 028025          168 LPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (215)
Q Consensus       168 ~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~  202 (215)
                        +..........+++|.  ++++.++++..+|.+
T Consensus       154 --~~~~~~~~fd~vI~N~--dle~a~~~l~~iI~~  184 (186)
T d1gkya_         154 --LAYAETGAHDKVIVND--DLDKAYKELKDFIFA  184 (186)
T ss_dssp             --HHHHTTTCSSEEEECS--SHHHHHHHHHHHHHT
T ss_pred             --HHhhhhcCCCEEEECc--CHHHHHHHHHHHHHh
Confidence              1111111123455543  799999999988753

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=7.1e-13  Score=94.34  Aligned_cols=164  Identities=16%  Similarity=0.227  Sum_probs=100.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC--eEeeHHHHHHHHHHc---C----CCcHHHHHHHHHcCCCCCHHHH------
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKS---G----SENGTMIQNMIKEGKIVPSEVT------   85 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~--~~i~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~------   85 (215)
                      +++|+|+||+|||||||.+.|.+.+..  ..+......|...++   +    .-..+.+......+.++.....      
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YG   81 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG   81 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceec
Confidence            578999999999999999999998641  122111112211111   1    1122456666666655432211      


Q ss_pred             --HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028025           86 --IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF  163 (215)
Q Consensus        86 --~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~  163 (215)
                        .+.+...+..  |..+++|.   .......+.. ....+-.++++..+.+++.+|+.+|  +  .+..+.+..|+...
T Consensus        82 t~~~~v~~~~~~--g~~~ildi---d~~g~~~lk~-~~~~~~~ifi~pps~~~l~~RL~~R--g--~~~~~~i~~Rl~~a  151 (205)
T d1s96a_          82 TSREAIEQVLAT--GVDVFLDI---DWQGAQQIRQ-KMPHARSIFILPPSKIELDRRLRGR--G--QDSEEVIAKRMAQA  151 (205)
T ss_dssp             EEHHHHHHHHTT--TCEEEEEC---CHHHHHHHHH-HCTTCEEEEEECSSHHHHHHHHHTT--S--CSCHHHHHHHHHHH
T ss_pred             cccchHHHHHhc--CCceeecC---cHHHHHHHHh-hhcccceeeeeccchHHHHHHHHhc--C--CchHHHHHHHHHHH
Confidence              3455555544  88999994   3455566666 6666655666777888899999987  4  34556677777654


Q ss_pred             hhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      .....    .+. ....+++|.  ++++.++++..+|.
T Consensus       152 ~~E~~----~~~-~fD~vIvNd--dl~~a~~el~~iI~  182 (205)
T d1s96a_         152 VAEMS----HYA-EYDYLIVND--DFDTALTDLKTIIR  182 (205)
T ss_dssp             HHHHT----TGG-GSSEEEECS--SHHHHHHHHHHHHH
T ss_pred             HHHHH----HHh-CCCEEEECc--CHHHHHHHHHHHHH
Confidence            43221    112 224556654  78999999988885

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=9.6e-14  Score=99.45  Aligned_cols=122  Identities=17%  Similarity=0.256  Sum_probs=69.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC-----eEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHH---H
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ---K   91 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~   91 (215)
                      .|.+|++.|.|||||||+|++|++.+++     .+++.|+ +|..+............................+.   .
T Consensus         1 ~p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (213)
T d1bifa1           1 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ-YRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK   79 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccc-eehhhccccccccccccccccchhhHHHHHHHHHHHHHH
Confidence            3789999999999999999999998863     4566654 66655543222100000000000000111122222   2


Q ss_pred             HHHccCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHh
Q 028025           92 AMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRIL  142 (215)
Q Consensus        92 ~~~~~~~~~~iidg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~e~~~~R~~  142 (215)
                      .+....+..+++|+.......+..+..+  ....+.+++...++.+.+.++..
T Consensus        80 ~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (213)
T d1bifa1          80 FLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANI  132 (213)
T ss_dssp             HHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHH
T ss_pred             HHHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHhH
Confidence            2333447889999977666666555543  23344457777787777666554

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.39  E-value=6.5e-12  Score=87.25  Aligned_cols=30  Identities=17%  Similarity=0.216  Sum_probs=27.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      +.++++|+|+|+|||||||+|+.|+++++.
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            456899999999999999999999999963

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.36  E-value=2.2e-12  Score=91.04  Aligned_cols=32  Identities=19%  Similarity=0.186  Sum_probs=28.4

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .+...+|.+|.|+|++||||||+|+.|++.++
T Consensus        16 ~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          16 AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             TSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             hccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34566789999999999999999999999886

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=99.28  E-value=3e-11  Score=91.15  Aligned_cols=30  Identities=13%  Similarity=0.204  Sum_probs=25.2

Q ss_pred             cCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028025          120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (215)
Q Consensus       120 ~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~  151 (215)
                      ..+.||.+|||++|++++.+|+.+|  +|+.+
T Consensus       151 ~~~~pdliIyLd~~pe~~l~RI~~R--gR~~E  180 (329)
T d1e2ka_         151 PTLPGTNIVLGALPEDRHIDRLAKR--QRPGE  180 (329)
T ss_dssp             CCCTTCEEEEEECCHHHHHHHHHHS--CCTTC
T ss_pred             ccCCCCEEEEEeCCHHHHHHHHHHc--CCCcC
Confidence            3457899999999999999999999  55444

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=99.26  E-value=3.9e-11  Score=90.84  Aligned_cols=29  Identities=17%  Similarity=0.168  Sum_probs=25.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +....+|+|.|+.||||||+++.|++.++
T Consensus         3 ~~~~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           3 MVTIVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             CCceEEEEEECCccCCHHHHHHHHHHHhc
Confidence            44567899999999999999999999985

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.26  E-value=2.8e-11  Score=84.39  Aligned_cols=33  Identities=27%  Similarity=0.337  Sum_probs=30.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~   53 (215)
                      .+.|+|+|+|||||||+|++|++++|+.++..+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~   39 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEY   39 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeee
Confidence            568999999999999999999999999888653

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.21  E-value=9.9e-12  Score=91.88  Aligned_cols=145  Identities=12%  Similarity=0.134  Sum_probs=79.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC-----CeEeeHHHHHHHHHHcCCCcHHHHHHH-HHc--------CCCCCHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNM-IKE--------GKIVPSEV   84 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~   84 (215)
                      .++++|.|+|++||||||+++.|++.++     ..+++.|++++....   ......... ...        ......+.
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr~~R~---~~~~~~~~~~~~~~~~~~~~~P~A~d~dl   78 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRA---DMKAELDRRYAAGDATFSHFSYEANELKE   78 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHH---HHHHHHHHHHHHTCTTCSTTSGGGBCHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCccchh---hhhhhhhhhhhhhccCCCCCCcccccHHH
Confidence            4677999999999999999999988873     357888887531000   000000000 000        00111222


Q ss_pred             HHHHHHHHHHc--------------------------------cCCCeEEEeCCCCCH-HHHHHHHHhcCCCCcEEEEEe
Q 028025           85 TIKLLQKAMEE--------------------------------SGNDKFLIDGFPRNE-ENRAAFEAVTKIEPEFVLFFD  131 (215)
Q Consensus        85 ~~~~~~~~~~~--------------------------------~~~~~~iidg~~~~~-~~~~~~~~~~~~~~~~~i~L~  131 (215)
                      +.+.+......                                .+...+++||..... .....    .....|+.||++
T Consensus        79 L~~~l~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~~~~~~~----ir~~~DlkIfVd  154 (288)
T d1a7ja_          79 LERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVN----IAGLADLKIGVV  154 (288)
T ss_dssp             HHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCB----CGGGCSEEEEEE
T ss_pred             HHHHHHHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhccccchhh----hHhhcCeEEEEE
Confidence            33333322110                                114688999842111 00000    112478999999


Q ss_pred             cCHHHHHHHHhhc---cCCCCCC-cHHHHHHHHHHHhhcchhH
Q 028025          132 CSEEEMERRILNR---NQGREDD-NVETIRKRFKVFLESSLPV  170 (215)
Q Consensus       132 ~~~e~~~~R~~~r---~~~~~~~-~~~~~~~~~~~~~~~~~~~  170 (215)
                      ++.+++..|...|   ++|+..+ ..+.+.+++..|.+...|.
T Consensus       155 ~d~dlrliRRI~RD~~eRG~s~E~V~~~i~rrmpdy~~yI~Pq  197 (288)
T d1a7ja_         155 PVINLEWIQKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQ  197 (288)
T ss_dssp             ECHHHHHHHHHHHTSSSCCSCCCCHHHHHHHHHHHHHHHTGGG
T ss_pred             CCCCeEEEeeehhhhhhcCCCHHHHHHHHHhcchHHHHHHHHh
Confidence            9999988877777   5666544 3556667777777665554

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=99.21  E-value=1.5e-10  Score=87.55  Aligned_cols=26  Identities=27%  Similarity=0.512  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      .+|+|.|+.||||||+++.|++.++.
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            56999999999999999999999863

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=2.7e-11  Score=90.70  Aligned_cols=41  Identities=15%  Similarity=0.282  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC-------CeEeeHHHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLR   57 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~-------~~~i~~~~~~~   57 (215)
                      ....|++|+|+|++||||||+|+.|++.+.       ..+++.|+++.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~  123 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH  123 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeEC
Confidence            456799999999999999999999999874       45688888763

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=4.4e-09  Score=72.76  Aligned_cols=156  Identities=14%  Similarity=0.230  Sum_probs=75.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC-eEeeHHHHHHHHHHc---CC----CcHHHHHHHHHcCCCCCHHHH--------
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GS----ENGTMIQNMIKEGKIVPSEVT--------   85 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~-~~i~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~--------   85 (215)
                      +.|+|.||+|||||||++.|.+++.- .........|.....   +.    -..+.+.+....+.++.....        
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fie~~~~~g~~YGt~   83 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTK   83 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCccceeeehhhhhhheecCceEEEeeecccceeee
Confidence            46899999999999999999987631 111110111111000   11    122445555555554332111        


Q ss_pred             HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhh
Q 028025           86 IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE  165 (215)
Q Consensus        86 ~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~  165 (215)
                      ...+...+..  +..+|+|..+   .....+.. ....+ ++||+..|.       ..|  ....+   ...+|+.....
T Consensus        84 ~~~i~~~~~~--g~~~ildid~---~g~~~lk~-~~~~~-~~IfI~pps-------~~~--~~~~~---~~~~r~~~~~~  144 (178)
T d1kgda_          84 LETIRKIHEQ--GLIAILDVEP---QALKVLRT-AEFAP-FVVFIAAPT-------ITP--GLNED---ESLQRLQKESD  144 (178)
T ss_dssp             HHHHHHHHHT--TCEEEEECCG---GGHHHHSS-TTTCE-EEEEEECCS-------CCT--TSCCS---HHHHHHHHHHH
T ss_pred             eecccchhcc--CceEEeccch---hhhhhhhc-ccccc-ceeeEeccc-------ccc--ccchH---HHHHHHHHHHH
Confidence            3445555544  7888988543   23333333 33333 577777653       111  11111   11222222111


Q ss_pred             cchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhC
Q 028025          166 SSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (215)
Q Consensus       166 ~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~  201 (215)
                      .   +...+......+++|+  +.++.++++.++++
T Consensus       145 ~---~e~~~~~~fD~vIvNd--dle~a~~el~~iI~  175 (178)
T d1kgda_         145 I---LQRTYAHYFDLTIINN--EIDETIRHLEEAVE  175 (178)
T ss_dssp             H---HHHHHGGGCSEEEECS--SHHHHHHHHHHHHH
T ss_pred             H---HHHHhhcCCCEEEECC--CHHHHHHHHHHHHH
Confidence            1   1111222233556654  68999999988774

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.91  E-value=7.2e-10  Score=81.75  Aligned_cols=122  Identities=15%  Similarity=0.194  Sum_probs=65.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhC--CeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCC----CCCHHHHHHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK----IVPSEVTIKLLQ   90 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~   90 (215)
                      ....|..|++.|||||||||+|+.||+.++  +..++.|++.. .   ................    ..........+.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ-Q---HPNFDELVKLYEKDVVKHVTPYSNRMTEAIIS  103 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT-T---STTHHHHHHHHGGGCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHH-H---hccCcccchhhhHHHHHHHHhhccchHHHHHH
Confidence            345688899999999999999999999984  67777766432 1   1111111111000000    000011122222


Q ss_pred             HHHHccCCCeEEEeCCCCCHHHHHHH-HHh-cCCCCcEEEEEecCHHHHHHHHhhc
Q 028025           91 KAMEESGNDKFLIDGFPRNEENRAAF-EAV-TKIEPEFVLFFDCSEEEMERRILNR  144 (215)
Q Consensus        91 ~~~~~~~~~~~iidg~~~~~~~~~~~-~~~-~~~~~~~~i~L~~~~e~~~~R~~~r  144 (215)
                      ..+..  ....+.|...........+ ..+ .......+.++..+.+....|...|
T Consensus       104 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~R  157 (273)
T d1gvnb_         104 RLSDQ--GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIER  157 (273)
T ss_dssp             HHHHH--TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred             HHHhh--CCCCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCchhhhhHHhcC
Confidence            23322  5566777655443333222 222 2222234677888999988887776

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=98.64  E-value=1.7e-06  Score=52.88  Aligned_cols=143  Identities=18%  Similarity=0.240  Sum_probs=85.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCeEE
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (215)
                      +|++.||.++=|||+|..|++.+.++++.-..+--.  .              .|    +   ..++++--.-....++|
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfela--k--------------sg----n---eklfehfnkladednvi   58 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELA--K--------------SG----N---EKLFEHFNKLADEDNVI   58 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHHH--H--------------HC----H---HHHHHHHHHHTTCCSEE
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhhhh--h--------------cc----C---HHHHHHHHhhcccccee
Confidence            689999999999999999999999998865332111  0              01    0   12222222222367788


Q ss_pred             EeCCCC---------------CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhhcc
Q 028025          103 IDGFPR---------------NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESS  167 (215)
Q Consensus       103 idg~~~---------------~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~  167 (215)
                      +|.|..               +..+.+.+.. ....-..++||.+++.+..+|+.-|  |.....-.++..-++.|++. 
T Consensus        59 idrfvysnlvyakkfkdysilterqlrfied-kikakakvvylhadpsvikkrlrvr--gdeyiegkdidsilelyrev-  134 (164)
T d2axpa1          59 IDRFVYSNLVYAKKFKDYSILTERQLRFIED-KIKAKAKVVYLHADPSVIKKRLRVR--GDEYIEGKDIDSILELYREV-  134 (164)
T ss_dssp             EESCHHHHHHHTTTBSSCCCCCHHHHHHHHH-HHTTTEEEEEEECCHHHHHHHHHHH--TCSSCCSSHHHHHHHHHHHH-
T ss_pred             eehhhhhhhHHHhhcccceehhHHHHHHHHH-HhhhheeEEEEecChHHHHHHhccc--cccccccCCHHHHHHHHHHH-
Confidence            886432               2344444444 3333446999999999999999988  43333333444433344332 


Q ss_pred             hhHHHHHHhcC-cEEEEcC-CCCHHHHHHHHHH
Q 028025          168 LPVVQYYEAKG-KVRKIDA-AKPVAEVFDAVKA  198 (215)
Q Consensus       168 ~~~~~~~~~~~-~~~~id~-~~~~~e~~~~i~~  198 (215)
                            .+..+ ..+.-|+ .-+-+|+...|.-
T Consensus       135 ------msnaglhtyswdtgqwssdeiakdiif  161 (164)
T d2axpa1         135 ------MSNAGLHTYSWDTGQWSSDEIAKDIIF  161 (164)
T ss_dssp             ------HHTCSSCEEEEETTTSCHHHHHHHHHH
T ss_pred             ------HhcCCceeeecccCCcchHHhhhheeE
Confidence                  12222 3445555 5578888877653

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.63  E-value=1.3e-08  Score=73.75  Aligned_cols=38  Identities=18%  Similarity=0.339  Sum_probs=32.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCCeEeeHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~~~i~~~~~~~~~   59 (215)
                      .+|+|+|++||||||+|+.|++++|+.+++.+|.+...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~   39 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDA   39 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHH
Confidence            57999999999999999999999999999965545444

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=2e-08  Score=74.08  Aligned_cols=40  Identities=30%  Similarity=0.404  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh--------CCeEeeHHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF--------GYTHLSAGDLL   56 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~--------~~~~i~~~~~~   56 (215)
                      ...+|.+|.|.|++||||||++..|.+.+        ...+++.||++
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY   70 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   70 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence            45568999999999999999998886654        34668998874

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=4.9e-08  Score=66.42  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++|+|+|++|||||||++.|++++
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            589999999999999999999876

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.42  E-value=1.3e-07  Score=66.39  Aligned_cols=164  Identities=15%  Similarity=0.186  Sum_probs=87.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCe-EeeHHHHHHHHHHc---CC-----CcHHHHHHHHHcCCCCCHHHH------
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT-HLSAGDLLRAEIKS---GS-----ENGTMIQNMIKEGKIVPSEVT------   85 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~-~i~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~------   85 (215)
                      +..|+|.||   ||+|+.++|.+.+.-. ........|....+   |.     ...+.+......+.++.....      
T Consensus         9 ~Rpivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~g~~YG   85 (199)
T d1kjwa2           9 ARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYG   85 (199)
T ss_dssp             CCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             CCCEEEECc---CHHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeecCCccc
Confidence            445677776   6999999999987421 11110111111000   00     012334555555444321111      


Q ss_pred             --HHHHHHHHHccCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028025           86 --IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF  163 (215)
Q Consensus        86 --~~~~~~~~~~~~~~~~iidg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~e~~~~R~~~r~~~~~~~~~~~~~~~~~~~  163 (215)
                        ...+...+..  |..+++|.-+   .....+.. ....| ++||+.+|.-....|+.+|      ...+.+.+++...
T Consensus        86 t~~~~i~~~~~~--gk~~lldid~---~g~~~lk~-~~~~~-i~IfI~pps~e~l~~l~kr------~~~~~i~~r~~~~  152 (199)
T d1kjwa2          86 TSVQSVREVAEQ--GKHCILDVSA---NAVRRLQA-AHLHP-IAIFIRPRSLENVLEINKR------ITEEQARKAFDRA  152 (199)
T ss_dssp             EEHHHHHHHHHT--TCEEEECCCT---THHHHHHH-TTCCC-EEEEECCSSHHHHHHHCTT------SCHHHHHHHHHHH
T ss_pred             eeeeEEEehhcC--CCcccccccc---hHHhhhhh-hccce-eEEeeccccHHHHHhhhcc------ccHHHHHHHHHHH
Confidence              3455555554  7889998543   34455555 55555 5899988765555566554      2345666665544


Q ss_pred             hhcchhHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhhCCCccc
Q 028025          164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK  206 (215)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~id~~~~~~e~~~~i~~~l~~~~~~  206 (215)
                      ...    ...+......+++|+  +.++.+++|..+|.....+
T Consensus       153 ~~~----e~~~~~~fd~vI~Nd--dle~a~~~l~~iI~~~~~~  189 (199)
T d1kjwa2         153 TKL----EQEFTECFSAIVEGD--SFEEIYHKVKRVIEDLSGP  189 (199)
T ss_dssp             HHH----HHHHGGGCSEEECCS--SHHHHHHHHHHHHHHHSCS
T ss_pred             HHH----HHHhhccCCEEEECc--CHHHHHHHHHHHHHHhcCC
Confidence            322    222333233445443  7899999999888655443

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.37  E-value=1.4e-07  Score=67.99  Aligned_cols=30  Identities=27%  Similarity=0.285  Sum_probs=26.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      +.-+++.||||+||||+|+.|++++++.+.
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~~~~~~   64 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASELQTNIH   64 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence            445889999999999999999999986554

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.35  E-value=1.2e-07  Score=65.06  Aligned_cols=26  Identities=38%  Similarity=0.650  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      |.|+|+||||||||||++.++..++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCC
Confidence            46999999999999999999998853

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=2.2e-07  Score=67.43  Aligned_cols=33  Identities=27%  Similarity=0.450  Sum_probs=28.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      .+.+..++|.||||+||||+|+.+|+++++.++
T Consensus        49 ~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          49 SGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             TTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            345668999999999999999999999987554

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=2.9e-07  Score=66.95  Aligned_cols=37  Identities=24%  Similarity=0.369  Sum_probs=29.2

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      .+....|.-+++.||||+|||++|+.+|+.++..++.
T Consensus        39 ~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~   75 (256)
T d1lv7a_          39 KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT   75 (256)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             HcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEE
Confidence            3334457789999999999999999999999976654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.30  E-value=2.7e-07  Score=66.79  Aligned_cols=32  Identities=28%  Similarity=0.405  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      +.-|++.||||+|||++|+.+|+.+++.++..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~i   71 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   71 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccccccccc
Confidence            45699999999999999999999999876653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.29  E-value=2.9e-07  Score=66.30  Aligned_cols=31  Identities=26%  Similarity=0.380  Sum_probs=26.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      +.-+++.||||+||||+|+.+++.+++.+..
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~   65 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRV   65 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence            4568899999999999999999999875443

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.27  E-value=3.7e-07  Score=64.30  Aligned_cols=32  Identities=34%  Similarity=0.675  Sum_probs=28.5

Q ss_pred             cccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      -++++.+|.+|++.||+||||||.+-+||.++
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34567889999999999999999999999877

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.3e-07  Score=63.78  Aligned_cols=24  Identities=38%  Similarity=0.517  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.|+|+|+|||||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            358999999999999999999988

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.24  E-value=4.7e-07  Score=65.54  Aligned_cols=39  Identities=21%  Similarity=0.435  Sum_probs=31.2

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee--HHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLL   56 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~--~~~~~   56 (215)
                      ...|.-|++.||||+|||++|+.+++.+++.++.  ..++.
T Consensus        39 ~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~   79 (247)
T d1ixza_          39 ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV   79 (247)
T ss_dssp             CCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             CCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhh
Confidence            3446679999999999999999999999976654  44443

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.22  E-value=3.2e-07  Score=68.70  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEe
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i   50 (215)
                      .|.-|++.||||+|||++|++||+.++..++
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~   78 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFI   78 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchh
Confidence            4566889999999999999999999975433

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.16  E-value=1e-06  Score=61.76  Aligned_cols=27  Identities=33%  Similarity=0.517  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+.+|++.||+||||||.+-+||.++
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            346789999999999999999999877

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.16  E-value=6.1e-07  Score=60.81  Aligned_cols=24  Identities=33%  Similarity=0.206  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++|.|+|.+|||||||+.+|..+|
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            478899999999999999998887

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.16  E-value=7.5e-07  Score=62.60  Aligned_cols=31  Identities=26%  Similarity=0.536  Sum_probs=23.4

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .++..+|.+|++.||+||||||.+-+||.++
T Consensus         6 ~~~~k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2           6 VIPDKIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             CSCSSSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4556789999999999999999999999877

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=9.4e-07  Score=64.37  Aligned_cols=35  Identities=26%  Similarity=0.439  Sum_probs=29.5

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ....|.-|++.||||+|||+++++++..++..++.
T Consensus        34 g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~   68 (258)
T d1e32a2          34 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL   68 (258)
T ss_dssp             CCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEE
Confidence            33456679999999999999999999999876555

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=98.11  E-value=1.2e-06  Score=66.72  Aligned_cols=34  Identities=29%  Similarity=0.270  Sum_probs=30.5

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      +++..+++.||||+|||++|+.|++.++..+++.
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            4566999999999999999999999999888764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.4e-06  Score=61.12  Aligned_cols=30  Identities=33%  Similarity=0.567  Sum_probs=26.5

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +...+|.+|++.||+||||||.+-+||.++
T Consensus         4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           4 VEGKAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             CCSCTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999999999777

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=1.4e-06  Score=63.76  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=29.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      ..+.-|++.||||+|||++++++|..++..++..
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~   72 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISI   72 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEE
Confidence            3456799999999999999999999999776654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.06  E-value=1.4e-06  Score=62.28  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .+...++|.||||+||||+|+.+++.++
T Consensus        43 ~~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          43 GSMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             TCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            3455689999999999999999999874

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.00  E-value=2.2e-06  Score=62.34  Aligned_cols=28  Identities=25%  Similarity=0.412  Sum_probs=24.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ..+..++|.||||+||||+++.+++.+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            4567899999999999999999999884

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.99  E-value=1.4e-06  Score=68.14  Aligned_cols=32  Identities=16%  Similarity=0.352  Sum_probs=28.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      |.-|++.||+|||||.||+.||+.++.+++..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~   80 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV   80 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            56799999999999999999999998766653

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.98  E-value=2.7e-06  Score=59.50  Aligned_cols=27  Identities=37%  Similarity=0.481  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++|.+|++.||+||||||.+-+||.++
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999877

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.98  E-value=2.3e-06  Score=61.31  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++|+|.|++|||||||.+.|.+.+
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Confidence            479999999999999999998766

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=2.3e-06  Score=61.18  Aligned_cols=31  Identities=19%  Similarity=0.410  Sum_probs=25.1

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+...+...++|.||||+||||+++.+++++
T Consensus        27 ~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          27 TLKSANLPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             HTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHcCCCCeEEEECCCCCChHHHHHHHHHHH
Confidence            3334444558899999999999999999986

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.91  E-value=9.3e-06  Score=58.11  Aligned_cols=26  Identities=27%  Similarity=0.519  Sum_probs=24.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..+++|.|+||||||++|..++...
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999998886

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=3.8e-06  Score=63.07  Aligned_cols=28  Identities=25%  Similarity=0.241  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .++..+|.|+|+||||||||...|...+
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            3678999999999999999999998776

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.90  E-value=3e-06  Score=60.21  Aligned_cols=30  Identities=20%  Similarity=0.198  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      ..+..-+++.||||+||||+|+.|++.++.
T Consensus        33 ~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          33 DGNMPHMIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             SCCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             cCCCCeEEEECCCCCCchhhHHHHHHHHhc
Confidence            334445789999999999999999998864

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.87  E-value=5.3e-06  Score=62.15  Aligned_cols=28  Identities=25%  Similarity=0.318  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .++..+|.|+|+|||||||+...|.+.+
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999999876

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.87  E-value=6.9e-06  Score=54.65  Aligned_cols=29  Identities=28%  Similarity=0.507  Sum_probs=26.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      .++.+|++.|.-||||||+++.+++.+|.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            45678999999999999999999999984

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=6.5e-06  Score=61.54  Aligned_cols=33  Identities=24%  Similarity=0.419  Sum_probs=27.4

Q ss_pred             CCCe-EEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           19 KKPT-VVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        19 ~~~~-~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      .+|. .+++.||+|+|||.+|+.||+.++..++.
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~   82 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR   82 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHhhccCCeeE
Confidence            3444 68899999999999999999999865554

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=5e-06  Score=59.94  Aligned_cols=25  Identities=28%  Similarity=0.611  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..++|.||||+||||+++.+++.+
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhh
Confidence            4458899999999999999999987

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.82  E-value=3.1e-06  Score=61.95  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +++|.||||+||||+++.+++.++
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999873

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=7.3e-06  Score=58.17  Aligned_cols=27  Identities=22%  Similarity=0.411  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +..-+++.||||+||||+++.+++.++
T Consensus        34 ~~~~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          34 KLPHLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCChhHHHHHHHHHhh
Confidence            333477999999999999999999874

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=9.3e-06  Score=57.66  Aligned_cols=31  Identities=23%  Similarity=0.296  Sum_probs=25.7

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-++.|.||+||||||+.+.++--+
T Consensus        20 sl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          20 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            3445677899999999999999999996544

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.68  E-value=0.00013  Score=51.15  Aligned_cols=36  Identities=25%  Similarity=0.291  Sum_probs=29.2

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh-----CCeEeeHHHHHHHH
Q 028025           24 VFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAE   59 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~-----~~~~i~~~~~~~~~   59 (215)
                      ++|.|++|||||-|++++++++     ...+++..++....
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~   79 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM   79 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHH
Confidence            8899999999999999999987     34677776665543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.67  E-value=8.5e-06  Score=57.83  Aligned_cols=31  Identities=29%  Similarity=0.300  Sum_probs=26.0

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-+++|.|++||||||+.+.++--.
T Consensus        25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEcCCCEEEEECCCCCCcchhhHhccCCC
Confidence            4555678899999999999999999886544

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=8.5e-06  Score=58.37  Aligned_cols=30  Identities=30%  Similarity=0.506  Sum_probs=25.5

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-.|+|.|++|||||||++.|..-+
T Consensus        24 l~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          24 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            344567899999999999999999997755

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.65  E-value=9.1e-06  Score=58.68  Aligned_cols=29  Identities=28%  Similarity=0.449  Sum_probs=24.7

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .-.+..+++|.|++|||||||++.|+.-+
T Consensus        37 ~i~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          37 KIPAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            34467899999999999999999997655

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.64  E-value=1.5e-05  Score=60.69  Aligned_cols=32  Identities=19%  Similarity=0.376  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      .+..|++.||+|+|||.+|+.||+.++..++.
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir   98 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAI   98 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhcccceee
Confidence            35569999999999999999999988654443

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.64  E-value=1e-05  Score=57.99  Aligned_cols=31  Identities=16%  Similarity=0.353  Sum_probs=25.8

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-+++|.|++||||||+++.|+.-+
T Consensus        22 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3444578899999999999999999997655

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.64  E-value=2e-05  Score=49.50  Aligned_cols=29  Identities=7%  Similarity=0.024  Sum_probs=26.0

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +.+.+.|+++|.+||||||+|.+|...++
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l~   31 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTFL   31 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999988884

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=1e-05  Score=57.76  Aligned_cols=31  Identities=23%  Similarity=0.237  Sum_probs=25.7

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-++.|.|++||||||+++.++--.
T Consensus        25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          25 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEECSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            4455678899999999999999999996544

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.61  E-value=2.4e-05  Score=56.78  Aligned_cols=29  Identities=17%  Similarity=0.292  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCe
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~   48 (215)
                      ...+|+|.|++|+||||+++.+++..+..
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~   56 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLP   56 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCC
Confidence            45689999999999999999999988753

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1.3e-05  Score=57.71  Aligned_cols=30  Identities=30%  Similarity=0.433  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++||||||+++.|..-+
T Consensus        35 l~i~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          35 FTLRPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            444578899999999999999999996655

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.60  E-value=1.2e-05  Score=57.36  Aligned_cols=30  Identities=30%  Similarity=0.358  Sum_probs=24.9

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-++.|.||+||||||+++.++--+
T Consensus        24 l~i~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             eEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            334567799999999999999999997654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.59  E-value=1.6e-05  Score=56.66  Aligned_cols=31  Identities=29%  Similarity=0.369  Sum_probs=25.8

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-++.|.||+||||||+.+.++--+
T Consensus        26 sl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          26 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             eEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            3445577899999999999999999997655

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.57  E-value=2.4e-05  Score=51.86  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +.|+|.|.||||||||.++|...
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999998643

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.56  E-value=3.1e-05  Score=51.77  Aligned_cols=27  Identities=22%  Similarity=0.330  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +.+-..|+|.|.||||||||.+++...
T Consensus         2 m~ke~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           2 MTREMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHhCC
Confidence            455677999999999999999998653

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.56  E-value=9.9e-06  Score=56.44  Aligned_cols=28  Identities=32%  Similarity=0.336  Sum_probs=24.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      -.++-+++|.||+||||||+.+.++..+
T Consensus        24 i~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          24 IEKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            3467789999999999999999997755

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=1.8e-05  Score=58.01  Aligned_cols=30  Identities=23%  Similarity=0.420  Sum_probs=25.5

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-+++|.|++||||||+++.|+-.+
T Consensus        57 l~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          57 LNIEKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            444577899999999999999999997655

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.55  E-value=1.1e-05  Score=57.15  Aligned_cols=31  Identities=23%  Similarity=0.311  Sum_probs=26.0

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-++.|.||+||||||+.+.|+--.
T Consensus        20 s~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          20 SLKVESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            3445677899999999999999999997655

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=2.8e-05  Score=54.42  Aligned_cols=26  Identities=15%  Similarity=0.299  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..++.|.|+|||||||+|..++-+.
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            57799999999999999999998764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.53  E-value=2.4e-05  Score=55.69  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      -+++|.||+||||||+.+.++--+
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCChHHHHHHHHHcCC
Confidence            467899999999999999997755

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.52  E-value=1.8e-05  Score=57.22  Aligned_cols=30  Identities=27%  Similarity=0.298  Sum_probs=25.1

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-++.|.|++||||||+++.++--+
T Consensus        23 ~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          23 LQARAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eEEcCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            445678899999999999999999996533

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=4.1e-05  Score=53.51  Aligned_cols=27  Identities=11%  Similarity=0.150  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      -|..+++.||+|+||||+|+.+++.+.
T Consensus        23 l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          23 GHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            366799999999999999999999884

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=97.51  E-value=5.3e-05  Score=51.23  Aligned_cols=31  Identities=23%  Similarity=0.395  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ...-|+|.|++|+||||+|-.|.++ |+..++
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~   43 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR-GHRLIA   43 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT-TCEEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEe
Confidence            3466999999999999999999875 766554

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=4.3e-05  Score=52.54  Aligned_cols=32  Identities=16%  Similarity=0.376  Sum_probs=26.7

Q ss_pred             cccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+...+..-+++.|+||+|||++++.||++.
T Consensus        36 ~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          36 QVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             HHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHhccCCCCeEEEecCCcccHHHHHHHHHHH
Confidence            44555556678999999999999999999877

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.48  E-value=4.4e-05  Score=52.66  Aligned_cols=26  Identities=12%  Similarity=0.182  Sum_probs=21.6

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ...-+.|+|.|.||||||||...|..
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcC
Confidence            33445699999999999999999964

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.46  E-value=1.3e-05  Score=57.29  Aligned_cols=30  Identities=23%  Similarity=0.238  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-++.|.||+||||||+.+.++--.
T Consensus        26 l~i~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          26 INIENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            444567899999999999999999997644

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=4.1e-05  Score=54.73  Aligned_cols=26  Identities=15%  Similarity=0.234  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      |..++|.||||+||||+|+.+++.++
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            56789999999999999999999885

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.45  E-value=3.7e-05  Score=57.18  Aligned_cols=23  Identities=35%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             EEEEcCCCCChHHHHHHHHHHhC
Q 028025           24 VFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +++.||||+|||.+|+.||...+
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHHhc
Confidence            45589999999999999999975

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=97.44  E-value=6e-05  Score=50.99  Aligned_cols=31  Identities=16%  Similarity=0.261  Sum_probs=25.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ...-|+|.|++|+||||+|-.|.++ |+..++
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lva   44 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK-NHLFVG   44 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT-TCEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCceec
Confidence            4567899999999999999999775 765554

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.43  E-value=1.7e-05  Score=57.27  Aligned_cols=29  Identities=28%  Similarity=0.405  Sum_probs=24.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .-.+..+++|.|++|||||||++.|..-+
T Consensus        40 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          40 SIEKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            34467899999999999999999986544

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=97.42  E-value=4.6e-05  Score=51.26  Aligned_cols=31  Identities=19%  Similarity=0.381  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ...-|+|.|++|+||||++-.|.++ |+.+++
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~li~   44 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR-GHRLVA   44 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEe
Confidence            4567999999999999999999876 766554

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.40  E-value=2.5e-05  Score=55.83  Aligned_cols=30  Identities=27%  Similarity=0.452  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.+.-++.|.||+||||||+.+.++--+
T Consensus        27 ~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            444577899999999999999999996655

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=3.3e-05  Score=52.62  Aligned_cols=31  Identities=13%  Similarity=0.154  Sum_probs=26.8

Q ss_pred             ccccCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        13 ~~~~~~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      .+.++......|+|.|.|++|||||.++|..
T Consensus         8 ~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_           8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             GGGSSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             hhHCCCccCCEEEEECCCCCCHHHHHHHHhC
Confidence            4667777888999999999999999998844

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.40  E-value=4.4e-05  Score=51.84  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      .+...|+|.|.+|||||||..+|..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            5567899999999999999999854

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.39  E-value=4.7e-05  Score=54.52  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...++.|.|+|||||||+|..++.+.
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            57799999999999999999988654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.39  E-value=3.2e-05  Score=55.84  Aligned_cols=31  Identities=32%  Similarity=0.524  Sum_probs=26.0

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.+.-++.|.||+||||||+++.++-.+
T Consensus        24 s~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          24 SISVNKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             CCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            3445578899999999999999999997655

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.37  E-value=6.3e-05  Score=50.81  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      .+-+.|+|.|.||||||||..+|..
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            4557899999999999999999865

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.36  E-value=6.1e-05  Score=50.38  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      -+.|+|.|++|||||||.+.|..
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHcC
Confidence            45799999999999999999865

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.36  E-value=6.6e-05  Score=50.75  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=22.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.+...|++.|.+|||||||..+|..
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhc
Confidence            34567899999999999999998844

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.35  E-value=6.5e-05  Score=55.93  Aligned_cols=28  Identities=21%  Similarity=0.439  Sum_probs=24.2

Q ss_pred             CCCCe-EEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPT-VVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~-~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.+|. .+++.||+|+|||.+|+.||+.+
T Consensus        49 ~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          49 PNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            34555 67889999999999999999987

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=4.1e-05  Score=54.55  Aligned_cols=25  Identities=16%  Similarity=0.348  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +..++.|.|+|||||||+|..++-.
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            5779999999999999999988654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=8e-05  Score=53.96  Aligned_cols=32  Identities=13%  Similarity=0.276  Sum_probs=26.6

Q ss_pred             cccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..|......-+++.|+||+|||++++.|+++.
T Consensus        32 ~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          32 QVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             HHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHhcCccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            44555566678999999999999999999876

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=8.1e-05  Score=50.27  Aligned_cols=26  Identities=23%  Similarity=0.466  Sum_probs=22.1

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.+...|+|.|.+|||||||...+..
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHh
Confidence            34456799999999999999999875

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=9.3e-05  Score=52.90  Aligned_cols=25  Identities=12%  Similarity=0.130  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +..++.|.|+||||||++|..++..
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5779999999999999999999864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=4.9e-05  Score=54.20  Aligned_cols=30  Identities=20%  Similarity=0.296  Sum_probs=25.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-..+-++.|.||+||||||+.+.|+-.+
T Consensus        23 ~~v~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          23 FEIEEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344567899999999999999999997665

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.27  E-value=4.2e-05  Score=57.46  Aligned_cols=23  Identities=30%  Similarity=0.523  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHh
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      -++|.|+||+||||+|+.+++-+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            48999999999999999999866

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=4e-05  Score=54.51  Aligned_cols=28  Identities=25%  Similarity=0.417  Sum_probs=23.8

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.-.+.-++.|.|++||||||+.+.|+-
T Consensus        20 l~I~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          20 GEVRAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEEETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            3334678999999999999999999965

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=9.4e-05  Score=48.95  Aligned_cols=22  Identities=23%  Similarity=0.255  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .|+|.|+|+||||||...|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=8e-05  Score=49.49  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +.|+|.|.|+||||||..+|...
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999743

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00011  Score=49.48  Aligned_cols=25  Identities=24%  Similarity=0.493  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ...+.|+|.|.+|||||||..++..
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            3446799999999999999999875

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=7.7e-05  Score=52.68  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      -++++|+|..||||||+.+.|.+..
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhcC
Confidence            3679999999999999999987754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.22  E-value=9.6e-05  Score=49.73  Aligned_cols=21  Identities=33%  Similarity=0.653  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~   43 (215)
                      .|+|.|.|+||||||.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999964

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.00011  Score=50.95  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +.|+|.|+|+||||||..+|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999754

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=97.21  E-value=0.00013  Score=50.11  Aligned_cols=33  Identities=15%  Similarity=0.185  Sum_probs=28.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCCeEee
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~   51 (215)
                      ++..+++|.|||++|||++|..|.+-++-.+++
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis   83 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   83 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhCCEEEe
Confidence            566889999999999999999999999766554

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.18  E-value=0.00012  Score=53.39  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ...+|+|.|+.|+||||+|+.+.+.
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3568999999999999999998765

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.16  E-value=0.0001  Score=50.15  Aligned_cols=27  Identities=26%  Similarity=0.299  Sum_probs=23.4

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHH
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIV   42 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La   42 (215)
                      +...+...|++.|.+|||||||..+|.
T Consensus        12 ~~~~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          12 WGSNKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             TTCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             hCCCceEEEEEECCCCCCHHHHHHHHh
Confidence            456677889999999999999999874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.16  E-value=8.4e-05  Score=55.47  Aligned_cols=24  Identities=46%  Similarity=0.606  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .|+|+|++||||||+.++|....+
T Consensus       168 nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CEEEEeeccccchHHHHHHhhhcc
Confidence            489999999999999999988774

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.00015  Score=48.47  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ..|++.|.+|+|||||+.+|..
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4589999999999999998875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.12  E-value=0.00016  Score=48.53  Aligned_cols=23  Identities=13%  Similarity=0.299  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..|++.|.+|||||||..+|...
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHcC
Confidence            45999999999999999998753

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.12  E-value=0.00016  Score=51.30  Aligned_cols=26  Identities=23%  Similarity=0.174  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...++.|.|+||+||||++..++-+.
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999998755

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00015  Score=48.47  Aligned_cols=24  Identities=33%  Similarity=0.421  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+.|+|.|.+|+|||||..++...
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhC
Confidence            457999999999999999998763

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00016  Score=48.68  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.|+|.|.+|||||||+.++..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            3589999999999999999864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.11  E-value=0.00017  Score=48.09  Aligned_cols=23  Identities=26%  Similarity=0.146  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..|+|.|++|||||||...|...
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46889999999999999998653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00016  Score=48.55  Aligned_cols=23  Identities=17%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +.|+|.|.+|||||||.+.|...
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999999998763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00014  Score=48.68  Aligned_cols=24  Identities=29%  Similarity=0.393  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +...|+|.|.+|+|||||...|..
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHHh
Confidence            345799999999999999999865

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=97.09  E-value=0.00013  Score=49.26  Aligned_cols=27  Identities=22%  Similarity=0.183  Sum_probs=22.9

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..+...|++.|.||||||||.++|...
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCC
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            456678999999999999999998643

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00019  Score=48.03  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.|+|.|.+|+|||||++++..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4589999999999999999865

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.00018  Score=48.02  Aligned_cols=23  Identities=26%  Similarity=0.515  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..|++.|.+|||||||..+|...
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            45899999999999999998663

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00019  Score=47.97  Aligned_cols=22  Identities=27%  Similarity=0.262  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.|+|.|.+|+|||||+.++..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999865

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00018  Score=48.42  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.|+|.|.+|||||||+.++..
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4599999999999999999865

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.07  E-value=0.00014  Score=49.37  Aligned_cols=20  Identities=20%  Similarity=0.310  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChHHHHHHHHH
Q 028025           24 VFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~   43 (215)
                      |+|.|.|+||||||..+|..
T Consensus         3 I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999964

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00018  Score=49.05  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ..|+|.|.+|||||||+..|..
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            4589999999999999999864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.06  E-value=0.00015  Score=51.19  Aligned_cols=25  Identities=20%  Similarity=0.224  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ++..++.|.|+||+|||++|..++-
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3678999999999999999987653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.00019  Score=47.82  Aligned_cols=22  Identities=18%  Similarity=0.276  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ..|++.|.+|||||||+.++..
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999999875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.0002  Score=48.23  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ..|+|.|.+|||||||...+..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            4589999999999999999864

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00019  Score=49.84  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~   44 (215)
                      -|+|.|+|+||||||..+|...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00023  Score=48.01  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.|+|.|.+|||||||+.++..
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4599999999999999999855

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00019  Score=48.81  Aligned_cols=25  Identities=16%  Similarity=0.202  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +...|+|.|.+|+|||||..++.+.
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhC
Confidence            4467999999999999999998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00024  Score=47.60  Aligned_cols=22  Identities=23%  Similarity=0.370  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.|+|.|.+|+|||||+..|..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5689999999999999999874

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.99  E-value=0.00033  Score=47.55  Aligned_cols=25  Identities=28%  Similarity=0.456  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ....|+|.|.+|+|||||..+|...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4578999999999999999999753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.99  E-value=0.00018  Score=48.64  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .|+|.|.+|||||||.++|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5999999999999999999754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00024  Score=47.42  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +.|+|.|.+|||||||...|...
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999998753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00025  Score=47.41  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+.|+|.|.+|+|||||.+++...
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            356899999999999999998653

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.0002  Score=47.89  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ..|+|.|.+|+|||||.++|..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5689999999999999999875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00025  Score=47.20  Aligned_cols=21  Identities=19%  Similarity=0.281  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~   43 (215)
                      .|+|.|.+|||||||++++..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00024  Score=47.65  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.|+|.|.+|+|||||..++..
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4589999999999999998865

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00025  Score=47.54  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.|+|.|.+|+|||||++.+..
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhC
Confidence            4589999999999999998865

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00028  Score=47.47  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~   43 (215)
                      .|+|.|.+|||||||+..+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            599999999999999998865

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.94  E-value=0.00029  Score=47.87  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.|++.|.+|||||||+..+..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4589999999999999999865

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.93  E-value=0.00016  Score=49.21  Aligned_cols=20  Identities=30%  Similarity=0.351  Sum_probs=18.4

Q ss_pred             EEEEcCCCCChHHHHHHHHH
Q 028025           24 VFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~   43 (215)
                      |.|.|+|+||||||..+|..
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999854

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0003  Score=47.12  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.|+|.|.+|||||||+.++..
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4599999999999999998865

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.00029  Score=48.35  Aligned_cols=23  Identities=17%  Similarity=0.382  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +.|+|.|.+|||||||...+...
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhhC
Confidence            45899999999999999998753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00022  Score=48.08  Aligned_cols=21  Identities=24%  Similarity=0.514  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~   43 (215)
                      .|+|.|.|++|||||..+|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999964

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.92  E-value=0.00031  Score=53.97  Aligned_cols=28  Identities=25%  Similarity=0.413  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      ...-+|+|+||+||||||....+-+.++
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            3456799999999999999999988874

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.91  E-value=0.00037  Score=50.57  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +..+++|.|+||+||||++..++-++
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHhh
Confidence            56789999999999999999988654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00022  Score=48.67  Aligned_cols=25  Identities=16%  Similarity=0.114  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ....|+|.|.+|+|||||..++.+.
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhhC
Confidence            3456999999999999999998753

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.91  E-value=0.00029  Score=49.47  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +....++.|++|+|||||..+|....
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchh
Confidence            35678999999999999999995443

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00042  Score=50.61  Aligned_cols=30  Identities=20%  Similarity=0.309  Sum_probs=26.0

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +....|.+|+++|.=|+||||++-.||..+
T Consensus         3 ~~~~~p~~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           3 FLQNIPPYLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             GGSSCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEECCCcChHHHHHHHHHHHH
Confidence            456678899999999999999888888877

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00031  Score=47.02  Aligned_cols=22  Identities=18%  Similarity=0.415  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .|++.|.+|+|||||.+.+...
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998763

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.86  E-value=0.00038  Score=46.61  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ..|+|.|.+|+|||||++++..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999999864

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00037  Score=47.01  Aligned_cols=22  Identities=18%  Similarity=0.474  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ..|++.|.+|+|||||.++|..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999999865

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.85  E-value=0.00019  Score=48.59  Aligned_cols=20  Identities=30%  Similarity=0.453  Sum_probs=18.5

Q ss_pred             EEEEcCCCCChHHHHHHHHH
Q 028025           24 VFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~   43 (215)
                      |.|.|.|+||||||..+|..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999954

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00041  Score=46.77  Aligned_cols=23  Identities=13%  Similarity=0.159  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..|+|.|.+|+|||||...+...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            35788999999999999998764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00041  Score=46.61  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      .+.|++.|.+|+|||||++.+..
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            45799999999999999999864

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.81  E-value=0.00035  Score=50.52  Aligned_cols=82  Identities=16%  Similarity=0.274  Sum_probs=45.8

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHHHHHHHHHH-c-CCCcHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIK-S-GSENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (215)
                      .+.++.|.|++||||||+|..++...   |  ..|++...-+..... . +.....    .+ -......+...++++..
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~----i~-~~~~~~~E~~~~~~~~l  130 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDE----LL-VSQPDNGEQALEIMELL  130 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGG----CE-EECCSSHHHHHHHHHHH
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchh----EE-EEcCCCHHHHHHHHHHH
Confidence            57799999999999999999987766   2  466665322211111 1 111110    00 00112234445556555


Q ss_pred             HHccCCCeEEEeCC
Q 028025           93 MEESGNDKFLIDGF  106 (215)
Q Consensus        93 ~~~~~~~~~iidg~  106 (215)
                      +...+...+|+|..
T Consensus       131 ~~~~~~~liIiDSi  144 (268)
T d1xp8a1         131 VRSGAIDVVVVDSV  144 (268)
T ss_dssp             HTTTCCSEEEEECT
T ss_pred             HhcCCCcEEEEecc
Confidence            54444678888863

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.00047  Score=47.99  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=21.7

Q ss_pred             eEEEEEcC-CCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGG-PGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~-~gsGKsTla~~La~~~   45 (215)
                      +.++|+|. +|+||||++-.|+..+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            57899999 5999999999999888

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.00025  Score=47.71  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=9.6

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.|+|.|.+|||||||..+|..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999998864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.74  E-value=0.00013  Score=48.38  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .|+|.|.|+||||||..+|...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999754

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00056  Score=49.41  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+.+|.|+||+||||++..|+-.+
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999988764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00056  Score=45.72  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..|+|.|.+|+|||||...+...
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999998653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.71  E-value=0.00032  Score=53.50  Aligned_cols=30  Identities=17%  Similarity=0.389  Sum_probs=23.9

Q ss_pred             cCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        16 ~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      |......-+++.|+||+|||+++..||++.
T Consensus        38 L~r~~k~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          38 LLRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             HHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             HhcCCCCCCeEECCCCCCHHHHHHHHHHHH
Confidence            434445557888999999999999999876

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.69  E-value=0.00066  Score=47.84  Aligned_cols=26  Identities=31%  Similarity=0.326  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++++|+|.|.|.+|||||+.+|....
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhc
Confidence            34569999999999999999986643

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=96.68  E-value=0.00066  Score=49.05  Aligned_cols=29  Identities=17%  Similarity=0.383  Sum_probs=26.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      ++..++++.||+++|||+++..++.-+|.
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            56788999999999999999999998864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.67  E-value=0.0006  Score=46.69  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=19.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANI   41 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~L   41 (215)
                      ...|+|.|.+|||||||..++
T Consensus         2 ~iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHH
Confidence            356999999999999999998

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00032  Score=47.10  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.|++.|.+|||||||..++..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.00067  Score=51.22  Aligned_cols=21  Identities=38%  Similarity=0.765  Sum_probs=17.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANI   41 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~L   41 (215)
                      ..+.+|.|+||+||||++..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            468999999999999987554

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.62  E-value=0.00071  Score=45.22  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.|++.|.+|||||||...+..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4688999999999999999875

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00071  Score=48.77  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...++.|.|+|||||||+|..++...
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHH
Confidence            56799999999999999999988776

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00061  Score=46.53  Aligned_cols=23  Identities=17%  Similarity=0.193  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..|++.|.+|+|||||..++.+.
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999988653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.58  E-value=0.00064  Score=45.96  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..|+|.|.+|+|||||.+.+.+.
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            35899999999999999988763

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.54  E-value=0.00087  Score=46.18  Aligned_cols=28  Identities=11%  Similarity=-0.002  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+.+.-+++.|+||+||||+|..|++..
T Consensus        12 ~~~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          12 KSEGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             TCSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            3457789999999999999999999876

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.51  E-value=0.00066  Score=45.91  Aligned_cols=22  Identities=23%  Similarity=0.227  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ..|.|.|.|.||||||..+|.+
T Consensus         6 inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEEeCCCCcHHHHHHHHHH
Confidence            3599999999999999999974

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.50  E-value=0.00076  Score=48.47  Aligned_cols=24  Identities=25%  Similarity=0.547  Sum_probs=21.3

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      .+..|+|.|.|||||||+...|..
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhC
Confidence            467899999999999999999854

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.46  E-value=0.00027  Score=49.79  Aligned_cols=26  Identities=19%  Similarity=0.314  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +....++.|++|+|||||..+|....
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            34567799999999999999995433

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.38  E-value=0.0011  Score=46.39  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=20.0

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ...|+|.|.+|||||||.+.+..
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHhc
Confidence            35699999999999999999853

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.37  E-value=0.0015  Score=41.88  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      .....+|.+|+|||||+++-.+....+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~~~   34 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQGY   34 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTTTC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            4567899999999999999776666663

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0013  Score=44.22  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~   43 (215)
                      ..|++.|.+|||||||...+..
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            5699999999999999998755

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=96.36  E-value=0.0011  Score=48.94  Aligned_cols=16  Identities=31%  Similarity=0.667  Sum_probs=13.4

Q ss_pred             EEEEcCCCCChHHHHH
Q 028025           24 VFVLGGPGSGKGTQCA   39 (215)
Q Consensus        24 I~i~G~~gsGKsTla~   39 (215)
                      ++|.|+|||||||++-
T Consensus        27 ~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             EEEEECTTSCHHHHHH
T ss_pred             EEEEecCCccHHHHHH
Confidence            6677999999998754

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=96.36  E-value=0.00094  Score=48.83  Aligned_cols=16  Identities=44%  Similarity=0.669  Sum_probs=13.0

Q ss_pred             EEEEcCCCCChHHHHH
Q 028025           24 VFVLGGPGSGKGTQCA   39 (215)
Q Consensus        24 I~i~G~~gsGKsTla~   39 (215)
                      ..|.|+|||||||++-
T Consensus        17 ~lI~g~aGTGKTt~l~   32 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVIT   32 (306)
T ss_dssp             EEECCCTTSCHHHHHH
T ss_pred             EEEEeeCCccHHHHHH
Confidence            4677999999998653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.34  E-value=0.0012  Score=44.96  Aligned_cols=24  Identities=25%  Similarity=0.234  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..|+|.|..|||||||..++...-
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            568999999999999999996543

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.31  E-value=0.0014  Score=46.04  Aligned_cols=23  Identities=22%  Similarity=0.202  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+++|+||.++||||+.+.++-.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHH
Confidence            47899999999999999976543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.19  E-value=0.0021  Score=47.06  Aligned_cols=28  Identities=21%  Similarity=0.204  Sum_probs=24.2

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      +.+..+.|.|.|.|.||||||-.+|...
T Consensus         6 ~~~~~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1           6 RPGNNLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHCC
Confidence            4556788999999999999999999853

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.11  E-value=0.0015  Score=47.86  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+-+|+|+.||||||+.++|+=-+
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            477999999999999999985433

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.11  E-value=0.0024  Score=44.07  Aligned_cols=27  Identities=26%  Similarity=0.276  Sum_probs=22.6

Q ss_pred             CCCCCe-EEEEEcCCCCChHHHHHHHHH
Q 028025           17 TVKKPT-VVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        17 ~~~~~~-~I~i~G~~gsGKsTla~~La~   43 (215)
                      +..+|. .|+|.|...+|||||+.+|..
T Consensus         3 ~~~~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           3 PKVQPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCCCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCCCCeEEEEEEccCCcHHHHHHHHHh
Confidence            455664 599999999999999999954

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0021  Score=45.40  Aligned_cols=25  Identities=16%  Similarity=0.115  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+++|+||.++||||+.+.++-..
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHHHH
Confidence            4679999999999999999876544

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.09  E-value=0.0019  Score=46.05  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.8

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 028025           24 VFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~   45 (215)
                      |+|.|++|+||+++|+.+.+..
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHHhc
Confidence            7889999999999999997654

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.027  Score=39.36  Aligned_cols=32  Identities=16%  Similarity=0.042  Sum_probs=26.2

Q ss_pred             cccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        14 ~~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..+..++|+..+|.|..|||||-++-..+...
T Consensus        69 ~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~  100 (233)
T d2eyqa3          69 SDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA  100 (233)
T ss_dssp             HHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH
T ss_pred             HHHhccCccCeEEEcCCCCCcHHHHHHHHHHH
Confidence            34556688999999999999999998876554

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.00027  Score=48.53  Aligned_cols=24  Identities=38%  Similarity=0.542  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+.+|.|+.||||||+..+|.=-+
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            467889999999999999997655

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.0019  Score=49.38  Aligned_cols=23  Identities=30%  Similarity=0.316  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHH
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIV   42 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La   42 (215)
                      .+..|+|.|.||+||||+...|.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            46789999999999999999995

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0023  Score=46.13  Aligned_cols=29  Identities=24%  Similarity=0.422  Sum_probs=24.8

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ......+|+++|.=|+||||++-.||..+
T Consensus        16 ~~~~~~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2          16 ARNEHGLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             HTTSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            35678899999999999999988877777

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.01  E-value=0.0024  Score=44.08  Aligned_cols=24  Identities=25%  Similarity=0.129  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ..|+|.|-+++|||||+.+|-...
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHh
Confidence            459999999999999999996544

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.003  Score=45.80  Aligned_cols=29  Identities=17%  Similarity=0.306  Sum_probs=25.3

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +-+++-.+.|.|++|+|||||+..+++..
T Consensus        39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            44578889999999999999999998855

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.89  E-value=0.0033  Score=45.27  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ...++.|.|++||||||+|..++...
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHH
Confidence            57799999999999999998877655

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.78  E-value=0.0034  Score=42.41  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..|+|.|..||||||+.+++...
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            46899999999999999998543

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.77  E-value=0.0025  Score=42.94  Aligned_cols=24  Identities=25%  Similarity=0.508  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      +|+|+|+..||||.+|..|+...+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC
Confidence            479999999999999999986654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.69  E-value=0.004  Score=45.06  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+.|.|.|.|.|||||+-.+|...
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCC
Confidence            467999999999999999999854

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.67  E-value=0.0033  Score=47.94  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIV   42 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La   42 (215)
                      +.+-+|+|+.||||||+..+++
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4467899999999999999985

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=95.58  E-value=0.0046  Score=42.29  Aligned_cols=23  Identities=30%  Similarity=0.238  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..|+|.|-+.+|||||+.+|...
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHH
Confidence            44999999999999999998653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=95.41  E-value=0.0055  Score=44.21  Aligned_cols=26  Identities=19%  Similarity=0.406  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      ..+..|+|.|.|.+||||+...|..+
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEEecCccchhhhhhhhhcc
Confidence            45778999999999999999999654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.0049  Score=47.31  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChHHHHHHHHHHh
Q 028025           24 VFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++|.|++|||||++++.+..+.
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~~   74 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYTG   74 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHH
Confidence            8999999999999987665554

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.23  E-value=0.0026  Score=40.47  Aligned_cols=21  Identities=29%  Similarity=0.300  Sum_probs=16.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCA   39 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~   39 (215)
                      .+....+|.+++|||||..+-
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHH
T ss_pred             HcCCcEEEEcCCCCChhHHHH
Confidence            345678999999999996663

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.11  E-value=0.0066  Score=43.62  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      .|+|.|..|+|||||+.+|.-.-|
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcC
Confidence            589999999999999999854443

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.08  E-value=0.0072  Score=43.57  Aligned_cols=26  Identities=19%  Similarity=0.119  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~   46 (215)
                      -.-|+|.|..|||||||+.+|...-|
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            34599999999999999999976655

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.96  E-value=0.058  Score=38.40  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=25.1

Q ss_pred             ccCCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        15 ~~~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+..+.|+.-++.|..|||||-++-..+...
T Consensus        98 d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~  128 (264)
T d1gm5a3          98 DMISEKPMNRLLQGDVGSGKTVVAQLAILDN  128 (264)
T ss_dssp             HHHSSSCCCCEEECCSSSSHHHHHHHHHHHH
T ss_pred             HhhccCcceeeeeccccccccHHHHHHHHHH
Confidence            3456678899999999999999998766543

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.89  E-value=0.011  Score=41.00  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=18.8

Q ss_pred             EEEEE-cCCCCChHHHHHHHHHHh
Q 028025           23 VVFVL-GGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        23 ~I~i~-G~~gsGKsTla~~La~~~   45 (215)
                      +|.|. |--|+||||++..||..+
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHHH
Confidence            45555 778999999999988877

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.72  E-value=0.011  Score=42.59  Aligned_cols=27  Identities=22%  Similarity=0.415  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+.-.+.|.|++|+|||||+..++.+.
T Consensus        66 gkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          66 AKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            366779999999999999999998764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.71  E-value=0.009  Score=40.61  Aligned_cols=21  Identities=19%  Similarity=0.205  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~   43 (215)
                      .|+|.|.+.+|||||+.+|..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEeccCCcHHHHHHHHHh
Confidence            489999999999999999953

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.69  E-value=0.0096  Score=43.80  Aligned_cols=23  Identities=26%  Similarity=0.257  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      |-|.|.|.|.||||||-.+|...
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCC
Confidence            35899999999999999999553

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.60  E-value=0.016  Score=40.23  Aligned_cols=25  Identities=28%  Similarity=0.468  Sum_probs=20.4

Q ss_pred             CeEEEEE-cCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVL-GGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~-G~~gsGKsTla~~La~~~   45 (215)
                      .++|.|. +.-|+||||++-.||..+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHH
Confidence            3567777 566999999999998877

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.011  Score=42.63  Aligned_cols=24  Identities=21%  Similarity=0.218  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      -.+|.|.|+.++|||||+..|...
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCC
Confidence            447999999999999999998654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.39  E-value=0.019  Score=39.95  Aligned_cols=26  Identities=23%  Similarity=0.414  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      ..|++.|-.++|||||+.+|--..|.
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g~   29 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRGF   29 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHBC
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCC
Confidence            34999999999999999998766664

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=94.38  E-value=0.017  Score=40.13  Aligned_cols=26  Identities=15%  Similarity=0.197  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      ..|++.|-..+|||||+.+|....|.
T Consensus        10 ~~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3          10 LRFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            45899999999999999999776664

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.29  E-value=0.017  Score=39.17  Aligned_cols=20  Identities=25%  Similarity=0.273  Sum_probs=16.1

Q ss_pred             EEEEcCCCCChHHHHHHHHH
Q 028025           24 VFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        24 I~i~G~~gsGKsTla~~La~   43 (215)
                      .++.+|+|||||.++-.++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHH
Confidence            56779999999987776654

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.27  E-value=0.033  Score=35.72  Aligned_cols=29  Identities=17%  Similarity=0.127  Sum_probs=24.2

Q ss_pred             CCCCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        17 ~~~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +...+.+-+|+||..|||||-.-....++
T Consensus         3 ~~~~G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           3 PKDHGWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             CTTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcceeEEEEEeccccHHHHHHHHHHHHh
Confidence            34567888999999999999888877766

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.13  E-value=0.015  Score=41.17  Aligned_cols=29  Identities=31%  Similarity=0.381  Sum_probs=23.7

Q ss_pred             CCCeE-EEEEcCCCCChHHHHHHHHHHhCC
Q 028025           19 KKPTV-VFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        19 ~~~~~-I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      .++.+ |+|.|-.++|||||+.+|.-..|.
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~   50 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGM   50 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCC
Confidence            34454 999999999999999999766664

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.76  E-value=0.037  Score=35.05  Aligned_cols=26  Identities=31%  Similarity=0.399  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.+-+|+||..|||||-.-..+.++
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            35678899999999999877766665

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.72  E-value=0.026  Score=40.20  Aligned_cols=32  Identities=25%  Similarity=0.384  Sum_probs=24.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---C--CeEeeHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAG   53 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~---~--~~~i~~~   53 (215)
                      +.|+|.|.=|+||||++-.|+-.+   |  ...++.|
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D   38 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD   38 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            468889988999999998888777   3  3456653

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.48  E-value=0.03  Score=39.34  Aligned_cols=26  Identities=31%  Similarity=0.413  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      .-|+|.|-..+|||||+.+|.-..|.
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~   32 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGG   32 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            46999999999999999999877775

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.18  E-value=0.027  Score=41.00  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=19.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIV   42 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La   42 (215)
                      .+.|+|.|...|||||+..+|.
T Consensus        24 lP~ivVvG~~ssGKSSliNaLl   45 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIV   45 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHh
Confidence            3468999999999999999995

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=93.10  E-value=0.024  Score=41.28  Aligned_cols=19  Identities=32%  Similarity=0.441  Sum_probs=16.1

Q ss_pred             CeEEEEEcCCCCChHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCA   39 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~   39 (215)
                      .-+-++.|.+|+|||||+.
T Consensus        14 ~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          14 GDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             SCEEEEECSTTSSHHHHHC
T ss_pred             CCEEEEEccCCCCccccee
Confidence            3566899999999999885

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=93.09  E-value=0.04  Score=44.85  Aligned_cols=27  Identities=22%  Similarity=0.485  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.|+|.|-+|||||+-++.+-+.+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999998877

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.07  E-value=0.04  Score=45.07  Aligned_cols=27  Identities=15%  Similarity=0.455  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.|+|.|-+|||||+-++.+-+.+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            457789999999999999999998877

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.94  E-value=0.021  Score=41.76  Aligned_cols=19  Identities=37%  Similarity=0.471  Sum_probs=16.1

Q ss_pred             CeEEEEEcCCCCChHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCA   39 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~   39 (215)
                      .-+-++.|.+|+|||||+.
T Consensus        14 gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          14 GDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             CCEEEEECCTTSSHHHHHC
T ss_pred             CCEEEEEccCCCCccccee
Confidence            3456799999999999995

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.90  E-value=0.044  Score=44.79  Aligned_cols=27  Identities=15%  Similarity=0.479  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.|+|.|-+|||||+-++.+-+.+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999997776

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.90  E-value=0.013  Score=39.89  Aligned_cols=19  Identities=11%  Similarity=0.055  Sum_probs=15.7

Q ss_pred             eEEEEEcCCCCChHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCAN   40 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~   40 (215)
                      .-+++.+|+|||||+++..
T Consensus        41 ~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             SCEEEECSSHHHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHHHH
Confidence            3578999999999998743

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.88  E-value=0.056  Score=36.85  Aligned_cols=25  Identities=16%  Similarity=0.165  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      ..+|.+|+|+|||.++-.++.+++.
T Consensus        87 ~~ll~~~tG~GKT~~a~~~~~~~~~  111 (206)
T d2fz4a1          87 RGCIVLPTGSGKTHVAMAAINELST  111 (206)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSCS
T ss_pred             CcEEEeCCCCCceehHHhHHHHhcC
Confidence            4567889999999999999888864

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=92.75  E-value=0.047  Score=44.82  Aligned_cols=27  Identities=22%  Similarity=0.432  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +++-.|+|.|-+|||||+-++.+-+.+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            467799999999999999999988776

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.68  E-value=0.036  Score=39.94  Aligned_cols=26  Identities=12%  Similarity=0.277  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+.-.+.|.|++|+|||+++..++..
T Consensus        66 g~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          66 GRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEeecCCCCChHHHHHHHHHh
Confidence            35667899999999999999887654

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=92.66  E-value=0.047  Score=45.19  Aligned_cols=27  Identities=19%  Similarity=0.548  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      ++.-.|+|.|-+|||||+-++.+-+.+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999988777

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=92.50  E-value=0.025  Score=41.30  Aligned_cols=20  Identities=30%  Similarity=0.456  Sum_probs=16.8

Q ss_pred             CeEEEEEcCCCCChHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCAN   40 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~   40 (215)
                      .-+-++.|.+|+|||||+..
T Consensus        14 ~~valffGLSGTGKTTLs~~   33 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLSTD   33 (318)
T ss_dssp             CCEEEEEECTTSCHHHHTCB
T ss_pred             CCEEEEEccCCCCccccccC
Confidence            35679999999999998763

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.33  E-value=0.048  Score=39.40  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=19.7

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      .+.|+|+|.-.||||||..+|..
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhC
Confidence            34588999999999999999954

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.22  E-value=0.057  Score=38.81  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCChHHHHHHHHHHh---CC--eEeeHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAG   53 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La~~~---~~--~~i~~~   53 (215)
                      ..|+|.|.=|+||||++-.||..+   |.  ..++.|
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            357789999999999777776655   43  445553

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=92.07  E-value=0.054  Score=44.79  Aligned_cols=26  Identities=15%  Similarity=0.388  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.-.|+|.|-+|||||+-++.+-+.+
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999988876

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.91  E-value=0.038  Score=40.93  Aligned_cols=25  Identities=24%  Similarity=0.312  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           23 VVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      -|+|.|..++|||||+..|-..-|.
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~~~g~   43 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQRAGI   43 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHHHHBC
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCC
Confidence            4999999999999999999766653

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=91.25  E-value=0.047  Score=39.17  Aligned_cols=26  Identities=12%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHH
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~   44 (215)
                      .+.-.+.|.|++|+|||+++..++..
T Consensus        65 g~GQr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          65 GRGQRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BTTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred             cCCceEeeccCCCCChHHHHHHHHhh
Confidence            35667899999999999999876443

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=91.20  E-value=0.13  Score=32.71  Aligned_cols=25  Identities=16%  Similarity=0.199  Sum_probs=18.3

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      +.+-+|+||..|||||-.-..+.++
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHH
Confidence            4567899999999999544444444

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.18  E-value=0.044  Score=38.21  Aligned_cols=23  Identities=13%  Similarity=0.036  Sum_probs=17.9

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHH
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVE   43 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~   43 (215)
                      +.-+++.+|+|||||+++...+-
T Consensus        58 g~~~~i~apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFGLAMSL   80 (237)
T ss_dssp             TCCEECCCCBTSCSHHHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHH
Confidence            44578889999999988766554

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=91.00  E-value=0.061  Score=38.66  Aligned_cols=17  Identities=29%  Similarity=0.415  Sum_probs=14.8

Q ss_pred             CCeEEEEEcCCCCChHH
Q 028025           20 KPTVVFVLGGPGSGKGT   36 (215)
Q Consensus        20 ~~~~I~i~G~~gsGKsT   36 (215)
                      +...+++.+++|||||+
T Consensus         8 ~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             TTCEEEECCCTTSSTTT
T ss_pred             cCCcEEEEECCCCCHHH
Confidence            55678999999999996

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.98  E-value=0.21  Score=29.39  Aligned_cols=34  Identities=15%  Similarity=0.308  Sum_probs=27.3

Q ss_pred             CCCCeEEEEEcCCCCChHHHHHHHHHHhCCeEeeH
Q 028025           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (215)
Q Consensus        18 ~~~~~~I~i~G~~gsGKsTla~~La~~~~~~~i~~   52 (215)
                      +.+.+.|.+.|.-|+|-|.||+.|.+ .|+.+.-.
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~-~G~~VsGS   38 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLN-EGYQISGS   38 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHH-HTCEEEEE
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHh-CCCEEEEE
Confidence            45677899999999999999999954 67765544

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=85.93  E-value=0.32  Score=33.16  Aligned_cols=25  Identities=24%  Similarity=0.189  Sum_probs=20.9

Q ss_pred             CCCeEEEEEcCCCCChHHHHHHHHHHh
Q 028025           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (215)
Q Consensus        19 ~~~~~I~i~G~~gsGKsTla~~La~~~   45 (215)
                      .+.++|.|+|..  ||||.+..|++-|
T Consensus         3 ~~~~vI~ITGT~--GKTTt~~~l~~iL   27 (234)
T d1e8ca3           3 DNLRLVGVTGTN--GKTTTTQLLAQWS   27 (234)
T ss_dssp             GSSEEEEEESSS--CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCC--cHHHHHHHHHHHH
Confidence            455788899987  9999999998776

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.44  E-value=0.53  Score=35.72  Aligned_cols=17  Identities=24%  Similarity=0.305  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCChHHHHH
Q 028025           23 VVFVLGGPGSGKGTQCA   39 (215)
Q Consensus        23 ~I~i~G~~gsGKsTla~   39 (215)
                      ..+|.+.+|||||+.+-
T Consensus        18 ~~lv~A~AGsGKT~~l~   34 (485)
T d1w36b1          18 ERLIEASAGTGKTFTIA   34 (485)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEEcCchHHHHHHH
Confidence            58899999999997653

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.77  E-value=4.4  Score=26.88  Aligned_cols=21  Identities=24%  Similarity=0.216  Sum_probs=16.8

Q ss_pred             eEEEEEcCCCCChHHHHHHHH
Q 028025           22 TVVFVLGGPGSGKGTQCANIV   42 (215)
Q Consensus        22 ~~I~i~G~~gsGKsTla~~La   42 (215)
                      .-+++..++|||||...-...
T Consensus        43 ~d~iv~a~TGsGKT~~~~l~~   63 (208)
T d1hv8a1          43 YNIVAQARTGSGKTASFAIPL   63 (208)
T ss_dssp             SEEEEECCSSSSHHHHHHHHH
T ss_pred             CCeeeechhcccccceeeccc
Confidence            357899999999998776544

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=80.40  E-value=0.98  Score=34.03  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCChHHHHHHHHHHhCC
Q 028025           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (215)
Q Consensus        21 ~~~I~i~G~~gsGKsTla~~La~~~~~   47 (215)
                      .....|.|.+|||||-++..+.++.+-
T Consensus        31 ~~~q~l~GltGS~ka~~iA~l~~~~~r   57 (413)
T d1t5la1          31 VKHQTLLGATGTGKTFTISNVIAQVNK   57 (413)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred             CCcEEEeCCCCcHHHHHHHHHHHHhCC
Confidence            456789999999999999999999974