Citrus Sinensis ID: 028052

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGSNLKESKEVAFRNRSFWS
cHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEcccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHcccccEEEEcccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEEEEcccEEEEEcccccccccccHHHHHHHcccccc
HHHHHHHHHHHcccccHHHHHHHcccccccEEEEEEccccccHHHHcccccccEEEEEEHHHcccccccccccHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccEEcccEEEcccHHcc
mkhrflsfkKQKFMENLEHYQnladgqapkFMVIAcadsrvcpsnilgfqpgeafIVRNvanmvppcesgpsetNAALEFAVNSVKVENILVIGHSRCGGIHALmsmqdeedpsfIRSWVLVGKNARLNTKAAASslsfdhqcshcekesvncsllnlltypwiEEKVRAGALslhggyynfvdctfekwtldydgsnlkeskevafrnrsfws
MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDgsnlkeskevafrnrsfws
MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGSNLKESKEVAFRNRSFWS
************FMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPC*******NAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDG******************
MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGSNLKESKEVAFRNRSFWS
MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGSNLKESKEVAFRNRSFWS
MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGSNLKESKEVAFRNRSFW*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGSNLKESKEVAFRNRSFWS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query214 2.2.26 [Sep-21-2011]
P46512330 Carbonic anhydrase 1 OS=F N/A no 0.906 0.587 0.538 3e-54
P46510330 Carbonic anhydrase OS=Fla N/A no 0.906 0.587 0.538 6e-54
P46511330 Carbonic anhydrase OS=Fla N/A no 0.906 0.587 0.538 7e-54
P46281329 Carbonic anhydrase OS=Fla N/A no 0.906 0.589 0.538 1e-53
P17067328 Carbonic anhydrase, chlor N/A no 0.906 0.591 0.522 4e-53
P16016319 Carbonic anhydrase, chlor N/A no 0.906 0.608 0.517 6e-53
P27140347 Carbonic anhydrase, chlor no no 0.962 0.593 0.488 7e-53
P42737259 Carbonic anhydrase 2, chl no no 0.906 0.749 0.507 8e-53
P27141321 Carbonic anhydrase, chlor N/A no 0.906 0.604 0.507 2e-51
P40880324 Carbonic anhydrase, chlor N/A no 0.887 0.586 0.502 2e-50
>sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1 Back     alignment and function desciption
 Score =  211 bits (537), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/197 (53%), Positives = 133/197 (67%), Gaps = 3/197 (1%)

Query: 1   MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNV 60
           +K  F+ FK +KF+ N   Y  LA GQ+PKFMV AC+DSRVCPS++L FQPGEAF+VRNV
Sbjct: 126 IKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNV 185

Query: 61  ANMVPPCESGP-SETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPS--FIR 117
           ANMVPP +    S   AA+E+AV  +KV+ I VIGHSRCGGI  LM+  DE   S  FI 
Sbjct: 186 ANMVPPFDKTKYSGVGAAVEYAVLHLKVQEIFVIGHSRCGGIKGLMTFPDEGPHSTDFIE 245

Query: 118 SWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHG 177
            WV V   A+    A  +    D QC  CEKE+VN SL NLLTYP++ + +R   L+L G
Sbjct: 246 DWVKVCLPAKSKVVAEHNGTHLDDQCVQCEKEAVNVSLGNLLTYPFVRDGLRNNTLALKG 305

Query: 178 GYYNFVDCTFEKWTLDY 194
           G+Y+FV+ TFE W LD+
Sbjct: 306 GHYDFVNGTFELWALDF 322
Reversible hydration of carbon dioxide.
Flaveria linearis (taxid: 4225)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1
>sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2 Back     alignment and function description
>sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1 Back     alignment and function description
>sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1 Back     alignment and function description
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2 Back     alignment and function description
>sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2 Back     alignment and function description
>sp|P42737|CAH2_ARATH Carbonic anhydrase 2, chloroplastic OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2 Back     alignment and function description
>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query214
255563296313 carbonic anhydrase, putative [Ricinus co 0.995 0.680 0.786 7e-96
224140715256 predicted protein [Populus trichocarpa] 0.995 0.832 0.753 2e-91
297802642301 carbonic anhydrase family protein [Arabi 1.0 0.710 0.714 5e-89
388516167308 unknown [Lotus japonicus] 0.995 0.691 0.690 8e-89
18418245301 beta carbonic anhydrase 5 [Arabidopsis t 1.0 0.710 0.709 1e-88
388502556308 unknown [Lotus japonicus] 0.995 0.691 0.680 1e-87
296087414301 unnamed protein product [Vitis vinifera] 0.976 0.694 0.720 1e-87
359475658300 PREDICTED: carbonic anhydrase 2, chlorop 0.976 0.696 0.720 1e-87
79326253302 beta carbonic anhydrase 5 [Arabidopsis t 1.0 0.708 0.701 9e-87
357445965302 Carbonic anhydrase [Medicago truncatula] 1.0 0.708 0.686 2e-86
>gi|255563296|ref|XP_002522651.1| carbonic anhydrase, putative [Ricinus communis] gi|223538127|gb|EEF39738.1| carbonic anhydrase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  355 bits (911), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 169/215 (78%), Positives = 187/215 (86%), Gaps = 2/215 (0%)

Query: 1   MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNV 60
           MK RF+SFK+  +M+NLEH++NL+ GQAPKFMVIACADSRVCPSNILGFQPGEAF+VRNV
Sbjct: 98  MKQRFMSFKQNTYMKNLEHFENLSKGQAPKFMVIACADSRVCPSNILGFQPGEAFVVRNV 157

Query: 61  ANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDE-EDPSFIRSW 119
           ANMVP  ESGPSETNAALEFAVNS+KVENILVIGHS CGGI ALMSM D+ E  SFI SW
Sbjct: 158 ANMVPSYESGPSETNAALEFAVNSLKVENILVIGHSCCGGIRALMSMHDDVETSSFIGSW 217

Query: 120 VLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGY 179
           V VG NAR+ TK AAS+LSFD QC HCEKESVNCSL NLLTYPWIEEKVR G LS+HGGY
Sbjct: 218 VAVGMNARVRTKGAASNLSFDRQCRHCEKESVNCSLANLLTYPWIEEKVRNGELSIHGGY 277

Query: 180 YNFVDCTFEKWTLDYDGSNLK-ESKEVAFRNRSFW 213
           Y+FVDC FEKWTLDY  SNLK ES ++A +NR+FW
Sbjct: 278 YDFVDCAFEKWTLDYKASNLKGESGKIAVKNRAFW 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224140715|ref|XP_002323724.1| predicted protein [Populus trichocarpa] gi|222866726|gb|EEF03857.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297802642|ref|XP_002869205.1| carbonic anhydrase family protein [Arabidopsis lyrata subsp. lyrata] gi|297315041|gb|EFH45464.1| carbonic anhydrase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|388516167|gb|AFK46145.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|18418245|ref|NP_567928.1| beta carbonic anhydrase 5 [Arabidopsis thaliana] gi|14334478|gb|AAK59437.1| putative carbonate dehydratase [Arabidopsis thaliana] gi|21594039|gb|AAM65957.1| carbonate dehydratase-like protein [Arabidopsis thaliana] gi|21689751|gb|AAM67519.1| putative carbonate dehydratase [Arabidopsis thaliana] gi|62321082|dbj|BAD94173.1| carbonate dehydratase - like protein [Arabidopsis thaliana] gi|332660848|gb|AEE86248.1| beta carbonic anhydrase 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388502556|gb|AFK39344.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|296087414|emb|CBI34003.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475658|ref|XP_002263870.2| PREDICTED: carbonic anhydrase 2, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|79326253|ref|NP_001031784.1| beta carbonic anhydrase 5 [Arabidopsis thaliana] gi|332660849|gb|AEE86249.1| beta carbonic anhydrase 5 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357445965|ref|XP_003593260.1| Carbonic anhydrase [Medicago truncatula] gi|355482308|gb|AES63511.1| Carbonic anhydrase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query214
TAIR|locus:2134218302 BCA5 "beta carbonic anhydrase 1.0 0.708 0.701 3.2e-81
TAIR|locus:2196292290 BCA6 "beta carbonic anhydrase 0.925 0.682 0.57 3.8e-62
TAIR|locus:2016109280 BCA4 "beta carbonic anhydrase 0.906 0.692 0.530 5.6e-52
TAIR|locus:2084198347 CA1 "carbonic anhydrase 1" [Ar 0.962 0.593 0.488 2e-49
TAIR|locus:2185460331 CA2 "carbonic anhydrase 2" [Ar 0.906 0.586 0.507 2e-49
TAIR|locus:2034797258 BCA3 "beta carbonic anhydrase 0.906 0.751 0.5 2.6e-47
TIGR_CMR|GSU_2307211 GSU_2307 "carbonic anhydrase" 0.827 0.838 0.411 7.9e-30
TIGR_CMR|CBU_0139206 CBU_0139 "carbonic anhydrase" 0.766 0.796 0.395 1.9e-28
TIGR_CMR|SPO_3715216 SPO_3715 "carbonic anhydrase, 0.799 0.791 0.409 5.7e-27
TIGR_CMR|CJE_0288211 CJE_0288 "carbonic anhydrase" 0.803 0.815 0.35 4.6e-25
TAIR|locus:2134218 BCA5 "beta carbonic anhydrase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 153/218 (70%), Positives = 180/218 (82%)

Query:     1 MKHRFLSFKKQKFM-ENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRN 59
             MK RFL+FKK K++ ++ EHY+NLAD QAPKF+VIACADSRVCPS +LGFQPG+AF VRN
Sbjct:    85 MKQRFLAFKKLKYIRDDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRN 144

Query:    60 VANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDP-SFIRS 118
             +AN+VPP ESGP+ET AALEF+VN++ VENILVIGHSRCGGI ALM M+DE D  SFI +
Sbjct:   145 IANLVPPYESGPTETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEGDSRSFIHN 204

Query:   119 WVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGG 178
             WV+VGK A+ +TKA AS+L FDHQC HCEK S+N SL  LL YPWIEEKVR G+LSLHGG
Sbjct:   205 WVVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGG 264

Query:   179 YYNFVDCTFEKWTLDYDGSN--LKESKEVAFRNRSFWS 214
             YYNFVDCTFEKWT+DY  S    KE   +A ++RS WS
Sbjct:   265 YYNFVDCTFEKWTVDYAASRGKKKEGSGIAVKDRSVWS 302
GO:0004089 "carbonate dehydratase activity" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015976 "carbon utilization" evidence=IEA;ISS
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
TAIR|locus:2196292 BCA6 "beta carbonic anhydrase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016109 BCA4 "beta carbonic anhydrase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084198 CA1 "carbonic anhydrase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185460 CA2 "carbonic anhydrase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034797 BCA3 "beta carbonic anhydrase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2307 GSU_2307 "carbonic anhydrase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0139 CBU_0139 "carbonic anhydrase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3715 SPO_3715 "carbonic anhydrase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0288 CJE_0288 "carbonic anhydrase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P46513CAH2_FLALI4, ., 2, ., 1, ., 10.54490.81770.9210N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.766
4th Layer4.2.1.10.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query214
PLN03006301 PLN03006, PLN03006, carbonate dehydratase 1e-115
cd00884190 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) 4e-96
PLN02154290 PLN02154, PLN02154, carbonic anhydrase 4e-86
PLN00416258 PLN00416, PLN00416, carbonate dehydratase 3e-74
PLN03014347 PLN03014, PLN03014, carbonic anhydrase 9e-65
PLN03019330 PLN03019, PLN03019, carbonic anhydrase 4e-57
smart00947154 smart00947, Pro_CA, Carbonic anhydrase 1e-54
pfam00484149 pfam00484, Pro_CA, Carbonic anhydrase 6e-49
cd00382119 cd00382, beta_CA, Carbonic anhydrases (CA) are zin 2e-42
COG0288207 COG0288, CynT, Carbonic anhydrase [Inorganic ion t 2e-38
cd00883182 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) 1e-28
cd03378154 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) 1e-19
PRK10437220 PRK10437, PRK10437, carbonic anhydrase; Provisiona 6e-17
cd03379142 cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) 3e-10
PRK15219245 PRK15219, PRK15219, carbonic anhydrase; Provisiona 9e-07
>gnl|CDD|178583 PLN03006, PLN03006, carbonate dehydratase Back     alignment and domain information 
 Score =  329 bits (844), Expect = e-115
 Identities = 154/217 (70%), Positives = 180/217 (82%), Gaps = 3/217 (1%)

Query: 1   MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNV 60
           MK RFL+FKK K+M++ EHY+NLAD QAPKF+VIACADSRVCPS +LGFQPG+AF VRN+
Sbjct: 85  MKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNI 144

Query: 61  ANMVPPCESGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDP-SFIRSW 119
           AN+VPP ESGP+ET AALEF+VN++ VENILVIGHSRCGGI ALM M+DE D  SFI +W
Sbjct: 145 ANLVPPYESGPTETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEGDSRSFIHNW 204

Query: 120 VLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHGGY 179
           V+VGK A+ +TKA AS+L FDHQC HCEK S+N SL  LL YPWIEEKVR G+LSLHGGY
Sbjct: 205 VVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGY 264

Query: 180 YNFVDCTFEKWTLDYDGS--NLKESKEVAFRNRSFWS 214
           YNFVDCTFEKWT+DY  S    KE   +A ++RS WS
Sbjct: 265 YNFVDCTFEKWTVDYAASRGKKKEGSGIAVKDRSVWS 301

Length = 301
>gnl|CDD|238449 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|215111 PLN02154, PLN02154, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|177809 PLN00416, PLN00416, carbonate dehydratase Back     alignment and domain information
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|166660 PLN03019, PLN03019, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|214929 smart00947, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|215941 pfam00484, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|238224 cd00382, beta_CA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|223365 COG0288, CynT, Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238448 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|239473 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|182460 PRK10437, PRK10437, carbonic anhydrase; Provisional Back     alignment and domain information
>gnl|CDD|239474 cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|237927 PRK15219, PRK15219, carbonic anhydrase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 214
PLN03006301 carbonate dehydratase 100.0
PLN02154290 carbonic anhydrase 100.0
PLN00416258 carbonate dehydratase 100.0
PLN03014347 carbonic anhydrase 100.0
cd00884190 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-c 100.0
PLN03019330 carbonic anhydrase 100.0
cd00883182 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-c 100.0
PRK10437220 carbonic anhydrase; Provisional 100.0
COG0288207 CynT Carbonic anhydrase [Inorganic ion transport a 100.0
PRK15219245 carbonic anhydrase; Provisional 100.0
cd03378154 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-c 100.0
PF00484153 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Ca 100.0
cd00382119 beta_CA Carbonic anhydrases (CA) are zinc-containi 100.0
cd03379142 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-c 100.0
KOG1578276 consensus Predicted carbonic anhydrase involved in 100.0
KOG1578276 consensus Predicted carbonic anhydrase involved in 98.58
>PLN03006 carbonate dehydratase Back     alignment and domain information 
Probab=100.00  E-value=5.3e-61  Score=416.99  Aligned_cols=214  Identities=72%  Similarity=1.238  Sum_probs=189.9

Q ss_pred             ChhHHHhhhhhhhhhChHHHHhhcCCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCCchhHHHHHH
Q 028052            1 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGPSETNAALEF   80 (214)
Q Consensus         1 ~~~r~~~~~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~~~~~asley   80 (214)
                      +++||+.|+...+.+++++|+.++.||+|+++||+||||||+|+.+||++|||+||+||+||+|+|++.+..++.+||||
T Consensus        85 L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~d~~~~~~~aSLEY  164 (301)
T PLN03006         85 MKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEF  164 (301)
T ss_pred             HHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHHHHhCCCCCCEEEEeccccccCCccccccchhhhHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999987655679999999


Q ss_pred             HHHhcCCceEEEEccCCchhhHHhhhcCCCCC-hhHHHHHHHhchhhHHhHHHhcCCCChhhhhhHHHHHHHHHHHHHHh
Q 028052           81 AVNSVKVENILVIGHSRCGGIHALMSMQDEED-PSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLL  159 (214)
Q Consensus        81 Av~~L~v~~IvV~GHt~CGav~aa~~~~~~~~-~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~  159 (214)
                      ||.+|+|++|||||||+||||+|+++....+. .++|+.|+..+.+++...........+++++..++++||++|+++|+
T Consensus       165 AV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g~~~~~I~~wv~~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~  244 (301)
T PLN03006        165 SVNTLNVENILVIGHSRCGGIQALMKMEDEGDSRSFIHNWVVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLL  244 (301)
T ss_pred             HHHHhCCCEEEEecCCCchHHHHHhhccccCCchhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987544332 46899999988887665433222345667777788899999999999


Q ss_pred             hChhHHHHHHcCceEEEEEEEEcCCCeEEEeeccCCCCCcc--cccccccccccccC
Q 028052          160 TYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGSNLK--ESKEVAFRNRSFWS  214 (214)
Q Consensus       160 ~~p~i~~~v~~g~l~v~G~~YDi~tG~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~  214 (214)
                      ++|+|++++++|+|.||||+||+.||+++.|..+|..++.+  +..+++.++|+||+
T Consensus       245 ~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (301)
T PLN03006        245 GYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWTVDYAASRGKKKEGSGIAVKDRSVWS  301 (301)
T ss_pred             hCHHHHHHHHCCCcEEEEEEEECCCceEEEecccccccccccccCCceeeecccccC
Confidence            99999999999999999999999999999999999766654  46799999999996

>PLN02154 carbonic anhydrase Back     alignment and domain information
>PLN00416 carbonate dehydratase Back     alignment and domain information
>PLN03014 carbonic anhydrase Back     alignment and domain information
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>PLN03019 carbonic anhydrase Back     alignment and domain information
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>PRK10437 carbonic anhydrase; Provisional Back     alignment and domain information
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15219 carbonic anhydrase; Provisional Back     alignment and domain information
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4 Back     alignment and domain information
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query214
1ekj_A221 The X-Ray Crystallographic Structure Of Beta Carbon 9e-54
3e3g_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant G41a 7e-20
3e24_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant W39f 1e-19
2a8c_A229 Haemophilus Influenzae Beta-Carbonic Anhydrase Leng 2e-19
3mf3_A221 Cobalt(Ii)-Substituted Haemophilus Influenzae B-Car 2e-19
3e28_A229 H. Influenzae Beta-carbonic Anhydrase, Variant Y181 6e-19
3e2x_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant V47a 6e-19
3e1v_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant D44n 8e-19
3ucj_A227 Coccomyxa Beta-Carbonic Anhydrase In Complex With A 2e-15
3qy1_A223 1.54a Resolution Crystal Structure Of A Beta-Carbon 3e-15
3eyx_A216 Crystal Structure Of Carbonic Anhydrase Nce103 From 5e-15
1i6p_A220 Crystal Structure Of E. Coli Beta Carbonic Anhydras 1e-14
2w3n_A239 Structure And Inhibition Of The Co2-Sensing Carboni 2e-14
2w3q_A243 Structure And Inhibition Of The Co2-Sensing Carboni 2e-14
1i6o_A220 Crystal Structure Of E. Coli Beta Carbonic Anhydras 2e-14
1ddz_A 496 X-Ray Structure Of A Beta-Carbonic Anhydrase From T 1e-13
2a5v_A213 Crystal Structure Of M. Tuberculosis Beta Carbonic 6e-12
1ym3_A215 Crystal Structure Of Carbonic Anhydrase Rv3588c Fro 6e-12
1g5c_A170 Crystal Structure Of The 'cab' Type Beta Class Carb 3e-04
3vqj_A219 Crystal Structutre Of Thiobacillus Thioparus Thi115 7e-04
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic Anhydrase From The C3 Dicot Pisum Sativum Length = 221 Back     alignment and structure 
Iteration: 1

 Score =  206 bits (524), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 103/197 (52%), Positives = 133/197 (67%), Gaps = 3/197 (1%)
Query: 1   MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNV 60
           +K  FL FKK+K+ +N   Y  LA GQ+P FMV AC+DSRVCPS++L FQPGEAF+VRNV
Sbjct: 17  IKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNV 76
Query: 61  ANMVPPCESGP-SETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDEEDPS--FIR 117
           AN+VPP +    + T AA+E+AV  +KV NI+VIGHS CGGI  L+S   +   S  FI 
Sbjct: 77  ANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIE 136
Query: 118 SWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHG 177
            WV +G  A+   KA      F   C+HCEKE+VN SL NLLTYP++ E +    L+L G
Sbjct: 137 EWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLALKG 196
Query: 178 GYYNFVDCTFEKWTLDY 194
           GYY+FV  +FE W L++
Sbjct: 197 GYYDFVKGSFELWGLEF 213
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a Length = 229 Back     alignment and structure
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f Length = 229 Back     alignment and structure
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Length = 229 Back     alignment and structure
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic Anhydrase Length = 221 Back     alignment and structure
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f Length = 229 Back     alignment and structure
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a Length = 229 Back     alignment and structure
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n Length = 229 Back     alignment and structure
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Acetazolamide Length = 227 Back     alignment and structure
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic Anhydrase From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 Length = 223 Back     alignment and structure
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From Saccharomyces Cerevisiae Length = 216 Back     alignment and structure
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase (Ecca) Length = 220 Back     alignment and structure
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic Anhydrase Can2 From The Pathogenic Fungus Cryptococcus Neoformans Length = 239 Back     alignment and structure
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic Anhydrase Can2 From The Pathogenic Fungus Cryptococcus Neoformans Length = 243 Back     alignment and structure
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase (Ecca) Length = 220 Back     alignment and structure
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red Alga, Porphyridium Purpureum R-1 Length = 496 Back     alignment and structure
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic Anhydrase, Rv3588c, Tetrameric Form Length = 213 Back     alignment and structure
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From Mycobacterium Tuberculosis Length = 215 Back     alignment and structure
>pdb|1G5C|A Chain A, Crystal Structure Of The 'cab' Type Beta Class Carbonic Anhydrase From Methanobacterium Thermoautotrophicum Length = 170 Back     alignment and structure
>pdb|3VQJ|A Chain A, Crystal Structutre Of Thiobacillus Thioparus Thi115 Carbonyl Sulfide Hydrolase Length = 219 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query214
1ekj_A221 Beta-carbonic anhydrase; rossman fold domain, stra 1e-84
3qy1_A223 Carbonic anhydrase; structural genomics, center fo 2e-71
3ucj_A227 Carbonic anhydrase; alpha/beta, strand exchange, l 9e-71
3e3i_A229 Carbonic anhydrase 2, beta carbonic anhydrase; all 1e-70
3eyx_A216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 2e-68
2w3q_A243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 3e-65
1ddz_A496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 2e-63
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 6e-63
1ym3_A215 Carbonic anhydrase (carbonate dehydratase) (carbo 9e-57
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 4e-34
3teo_A204 Carbon disulfide hydrolase; beta carbonic anhydras 2e-33
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 1e-26
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 3e-26
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Length = 221 Back     alignment and structure
 Score =  249 bits (637), Expect = 1e-84
 Identities = 102/197 (51%), Positives = 133/197 (67%), Gaps = 3/197 (1%)

Query: 1   MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNV 60
           +K  FL FKK+K+ +N   Y  LA GQ+P FMV AC+DSRVCPS++L FQPGEAF+VRNV
Sbjct: 17  IKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNV 76

Query: 61  ANMVPPCE-SGPSETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDE--EDPSFIR 117
           AN+VPP + +  + T AA+E+AV  +KV NI+VIGHS CGGI  L+S   +      FI 
Sbjct: 77  ANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIE 136

Query: 118 SWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHG 177
            WV +G  A+   KA      F   C+HCEKE+VN SL NLLTYP++ E +    L+L G
Sbjct: 137 EWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLALKG 196

Query: 178 GYYNFVDCTFEKWTLDY 194
           GYY+FV  +FE W L++
Sbjct: 197 GYYDFVKGSFELWGLEF 213
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Length = 223 Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Length = 227 Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Length = 229 Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Length = 216 Back     alignment and structure
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Length = 243 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Length = 215 Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Length = 170 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Length = 204 Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Length = 172 Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} Length = 166 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query214
1ekj_A221 Beta-carbonic anhydrase; rossman fold domain, stra 100.0
3qy1_A223 Carbonic anhydrase; structural genomics, center fo 100.0
3ucj_A227 Carbonic anhydrase; alpha/beta, strand exchange, l 100.0
3eyx_A216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 100.0
3e3i_A229 Carbonic anhydrase 2, beta carbonic anhydrase; all 100.0
2w3q_A243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 100.0
1ym3_A215 Carbonic anhydrase (carbonate dehydratase) (carbo 100.0
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 100.0
1ddz_A496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 100.0
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 100.0
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 100.0
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 100.0
3teo_A204 Carbon disulfide hydrolase; beta carbonic anhydras 100.0
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Back     alignment and structure
Probab=100.00  E-value=1.8e-57  Score=382.95  Aligned_cols=199  Identities=52%  Similarity=0.921  Sum_probs=173.3

Q ss_pred             ChhHHHhhhhhhhhhChHHHHhhcCCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCC-chhHHHHH
Q 028052            1 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP-SETNAALE   79 (214)
Q Consensus         1 ~~~r~~~~~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~-~~~~asle   79 (214)
                      +++++.+|.+..+.+++++|++|+.+|+|+++|||||||||+|+.+||++|||+||+|||||+|++++.+. .++++|||
T Consensus        17 L~~gN~~f~~~~~~~~~~~~~~La~gQ~P~~lvi~CsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~d~~~~~~~~asle   96 (221)
T 1ekj_A           17 IKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYAGTGAAIE   96 (221)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHTTCCCCSEEEEEECCGGGCHHHHSCCCTTSEEEEEEGGGCCCCSCTTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCcccCHHHHHhhccCCCCcEEEEEeCCCCCCHHHHhCCCCCcEEEEeccCcccCcccccccchhHHHHH
Confidence            36889999888887899999999999999999999999999999999999999999999999999877543 35779999


Q ss_pred             HHHHhcCCceEEEEccCCchhhHHhhhcCCCC--ChhHHHHHHHhchhhHHhHHHhcCCCChhhhhhHHHHHHHHHHHHH
Q 028052           80 FAVNSVKVENILVIGHSRCGGIHALMSMQDEE--DPSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLN  157 (214)
Q Consensus        80 yAv~~L~v~~IvV~GHt~CGav~aa~~~~~~~--~~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~  157 (214)
                      |||.+|||++|||||||+||||+|+++....+  ..++++.|++.+.|+...........++.+....++++||++||++
T Consensus        97 yAv~~L~v~~IvV~GHs~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~  176 (221)
T 1ekj_A           97 YAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGN  176 (221)
T ss_dssp             HHHHTSCCSEEEEEEESSCHHHHHHHHCCCSSCCCSSSHHHHHGGGHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEEccCCCCceeeecccccccccchHHHHHHHHhhhhHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998765432  2468999999998887654444344555555566778999999999


Q ss_pred             HhhChhHHHHHHcCceEEEEEEEEcCCCeEEEeeccCCCCCc
Q 028052          158 LLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGSNL  199 (214)
Q Consensus       158 L~~~p~i~~~v~~g~l~v~G~~YDi~tG~v~~~~~~~~~~~~  199 (214)
                      |+++|+|++++++|+|.||||+||++||+|+.+..+.....+
T Consensus       177 L~~~p~v~~~~~~g~l~v~G~~ydi~tG~v~~~~~~~~~~~~  218 (221)
T 1ekj_A          177 LLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLSST  218 (221)
T ss_dssp             HTTSHHHHHHHHTTSCEEEEEEEETTTTEEEEEEECCCCCCC
T ss_pred             HHhCHHHHHHHHcCCcEEEEEEEECCCCeEEEEecCCCCCcc
Confidence            999999999999999999999999999999999988876654
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} SCOP: c.53.2.1 PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} SCOP: c.53.2.1 PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Back     alignment and structure
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} SCOP: c.53.2.0 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 214
d1ekja_210 c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum 2e-54
d1ddza2239 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red 8e-45
d1i6pa_214 c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia 1e-44
d1ddza1242 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red a 3e-42
d1g5ca_169 c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Me 3e-32
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Length = 210 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Pea (Pisum sativum) [TaxId: 3888]

 Score =  171 bits (433), Expect = 2e-54
 Identities = 103/201 (51%), Positives = 133/201 (66%), Gaps = 3/201 (1%)

Query: 1   MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNV 60
           +K  FL FKK+K+ +N   Y  LA GQ+P FMV AC+DSRVCPS++L FQPGEAF+VRNV
Sbjct: 6   IKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNV 65

Query: 61  ANMVPPCESGPS-ETNAALEFAVNSVKVENILVIGHSRCGGIHALMSMQDE--EDPSFIR 117
           AN+VPP +      T AA+E+AV  +KV NI+VIGHS CGGI  L+S   +      FI 
Sbjct: 66  ANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIE 125

Query: 118 SWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLNLLTYPWIEEKVRAGALSLHG 177
            WV +G  A+   KA      F   C+HCEKE+VN SL NLLTYP++ E +    L+L G
Sbjct: 126 EWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLALKG 185

Query: 178 GYYNFVDCTFEKWTLDYDGSN 198
           GYY+FV  +FE W L++  S+
Sbjct: 186 GYYDFVKGSFELWGLEFGLSS 206
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 239 Back     information, alignment and structure
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 242 Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 169 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query214
d1ekja_210 beta-carbonic anhydrase {Pea (Pisum sativum) [TaxI 100.0
d1i6pa_214 beta-carbonic anhydrase {Escherichia coli [TaxId: 100.0
d1ddza2239 beta-carbonic anhydrase {Red alga (Porphyridium pu 100.0
d1ddza1242 beta-carbonic anhydrase {Red alga (Porphyridium pu 100.0
d1g5ca_169 beta-carbonic anhydrase {Archaeon Methanobacterium 100.0
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=2.7e-58  Score=382.86  Aligned_cols=197  Identities=52%  Similarity=0.930  Sum_probs=176.1

Q ss_pred             ChhHHHhhhhhhhhhChHHHHhhcCCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEccCCCCCCCCCCC-chhHHHHH
Q 028052            1 MKHRFLSFKKQKFMENLEHYQNLADGQAPKFMVIACADSRVCPSNILGFQPGEAFIVRNVANMVPPCESGP-SETNAALE   79 (214)
Q Consensus         1 ~~~r~~~~~~~~~~~~~~~~~~l~~gq~P~~~vitC~DSRv~pe~i~~~~~GdlfViRNaGN~v~~~~~~~-~~~~asle   79 (214)
                      +++||.+|+++.|.+++++|++++.||+|+++|||||||||+|+.+||.+|||+||+|||||+|++.+..+ .++++|||
T Consensus         6 l~~G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~C~DSRv~~e~if~~~~GdlfvvRnaGn~v~~~~~~~~~~~~~sle   85 (210)
T d1ekja_           6 IKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYAGTGAAIE   85 (210)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHTTCCCCSEEEEEECCGGGCHHHHSCCCTTSEEEEEEGGGCCCCSCTTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCccccCHHHHHHHhcCCCCceEEEeccccCCChhhhccCCCCcEEEEeccCCccCccccccchhhHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999876433 46899999


Q ss_pred             HHHHhcCCceEEEEccCCchhhHHhhhcCCCCC--hhHHHHHHHhchhhHHhHHHhcCCCChhhhhhHHHHHHHHHHHHH
Q 028052           80 FAVNSVKVENILVIGHSRCGGIHALMSMQDEED--PSFIRSWVLVGKNARLNTKAAASSLSFDHQCSHCEKESVNCSLLN  157 (214)
Q Consensus        80 yAv~~L~v~~IvV~GHt~CGav~aa~~~~~~~~--~~~i~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~  157 (214)
                      ||+.+|++++|||||||+||||+|+++....+.  .+++..|+..+.++...........+..+....++++||+.|+++
T Consensus        86 yav~~l~v~~IVVlGHt~CGav~Aa~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~  165 (210)
T d1ekja_          86 YAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGN  165 (210)
T ss_dssp             HHHHTSCCSEEEEEEESSCHHHHHHHHCCCSSCCCSSSHHHHHGGGHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcCCceEEEEEcCcchHHHHHhhhhhhccCccCchHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988655432  468999999999988766555445556666677889999999999


Q ss_pred             HhhChhHHHHHHcCceEEEEEEEEcCCCeEEEeeccCCCC
Q 028052          158 LLTYPWIEEKVRAGALSLHGGYYNFVDCTFEKWTLDYDGS  197 (214)
Q Consensus       158 L~~~p~i~~~v~~g~l~v~G~~YDi~tG~v~~~~~~~~~~  197 (214)
                      |++||+|++++++|+|.||||+||++||+|+.++.+++..
T Consensus       166 L~~~p~I~~~v~~g~l~I~G~vYDi~tG~v~~~~~~~g~~  205 (210)
T d1ekja_         166 LLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLS  205 (210)
T ss_dssp             HTTSHHHHHHHHTTSCEEEEEEEETTTTEEEEEEECCCCC
T ss_pred             HHcCHHHHHHHHcCCeEEEEEEEECCCcEEEEEeccCCCC
Confidence            9999999999999999999999999999999999998654
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure