Citrus Sinensis ID: 028054

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDFSQSSGQVMFM
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHHHHHHHHHHcccccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccEEcc
Coil and Loop (DISEMBL)
MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRmesgtepdidlaTITDRMAVKKAVQCGNVEDAIEKVndlnpeildtnpqLFFHLQQQRLIELIRNGKVEEALEFAQEelaprgeenQSFLEELERTVALLAFedvsncpvgdlLDISQRLKTASEVNAAILTsqshekdfsqssgqvmfm
Flexible Loop (DISEMBL)
MSLFWIVIRQLAEIEAMAmskkvitreewekklndvkirkedmnKLVMNFLVTEGYVDAAEKFrmesgtepdidlaTITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAIltsqshekdfsqssgqvmfm
Low Complexity Region (SEG)
MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVeealefaqeelaPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDFSQSSGQVMFM
Disordered region (IsUnstruct)
**LFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEF**************FLEELERTVALLAFEDVSNCPVGDLLDISQRLKT****************************
Disordered Region (DISOPRED)
***FWI**RQ*************************VKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAIL************SGQVMFM
Disordered Region (DISEMBL)
MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQ****************
Disordered Region (DISPRO)
*SLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQ****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLFWIVIRQLAEIEAMAMSKKVITxxxxxxxxxxxxxxxxxxxxxVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKDFSQSSGQVMFM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q54X16	228	Glucose-induced degradati	yes	no	0.855	0.802	0.655	4e-67
A7SWD3	225	Glucose-induced degradati	N/A	no	0.831	0.791	0.536	5e-52
Q6PC55	228	Glucose-induced degradati	yes	no	0.864	0.811	0.540	1e-51
Q5ZKQ7	228	Glucose-induced degradati	yes	no	0.831	0.780	0.539	1e-51
Q32L52	228	Glucose-induced degradati	yes	no	0.831	0.780	0.533	2e-51
Q9D7M1	228	Glucose-induced degradati	yes	no	0.831	0.780	0.533	6e-51
Q9NWU2	228	Glucose-induced degradati	yes	no	0.831	0.780	0.533	1e-50
Q10446	240	Uncharacterized protein C	yes	no	0.803	0.716	0.373	3e-19
P69566	653	Ran-binding protein 9 OS=	no	no	0.425	0.139	0.347	2e-08
Q96S59	729	Ran-binding protein 9 OS=	no	no	0.425	0.124	0.347	2e-08

>sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2

 Score =  254 bits (648), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 120/183 (65%), Positives = 147/183 (80%)

Query: 21  KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITD 80
           KKVI+  EW+ KL +V I K D+NKLVMN+LV EGY +AA KF+ ES T+  +DLA+I D
Sbjct: 11  KKVISTSEWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLASIAD 70

Query: 81  RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQ 140
           RMA++ A+QCG+VE  IE VNDLNPEILDTNPQL+FHLQQQ+LIELIR G   EAL+FAQ
Sbjct: 71  RMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQ 130

Query: 141 EELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSH 200
           +ELAP+GEEN  FLEELE+T++LL FED +  P+  LLD SQR KTA E+N+AIL SQS 
Sbjct: 131 DELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQ 190

Query: 201 EKD 203
           +KD
Sbjct: 191 DKD 193

Dictyostelium discoideum (taxid: 44689)

>sp|A7SWD3|GID8_NEMVE Glucose-induced degradation protein 8 homolog OS=Nematostella vectensis GN=v1g247787 PE=3 SV=1

 Score =  204 bits (518), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 96/179 (53%), Positives = 139/179 (77%), Gaps = 1/179 (0%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
           + REEW +K+  ++ ++ +MN+L+M++LVTEGY +AAEKFR+ESGT+P   L ++ DR+ 
Sbjct: 7   VNREEWMEKIGKLRFQRAEMNRLIMDYLVTEGYKEAAEKFRIESGTQPTAPLDSLDDRIK 66

Query: 84  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143
           +++AVQ G++E A+   N LNP+ILD+N QL+FHLQQQRLIELIR   +E A+EFAQ + 
Sbjct: 67  IREAVQKGDLEQAVSMTNKLNPDILDSNQQLYFHLQQQRLIELIREKDIEAAVEFAQGQF 126

Query: 144 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEK 202
           + +G+E+  +LEELE+T+ALLAF++    P GDLL  SQR K ASE+NAAIL ++ H+K
Sbjct: 127 SEQGQESGRYLEELEQTMALLAFDNPEESPFGDLLHTSQRQKVASELNAAILEAE-HKK 184

Nematostella vectensis (taxid: 45351)

>sp|Q6PC55|GID8_DANRE Glucose-induced degradation protein 8 homolog OS=Danio rerio GN=gid8 PE=2 SV=1

 Score =  202 bits (515), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 142/187 (75%), Gaps = 2/187 (1%)

Query: 17  MAMSKKV--ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDID 74
           M+ S+K   IT+EEW  KLN+V I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP++D
Sbjct: 1   MSYSEKPEDITKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPNVD 60

Query: 75  LATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 134
           L ++ +R+ +++ V  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E 
Sbjct: 61  LDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEA 120

Query: 135 ALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAI 194
           ALEFAQ +LA +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+
Sbjct: 121 ALEFAQSQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAV 180

Query: 195 LTSQSHE 201
           L  ++ E
Sbjct: 181 LDYENRE 187

Danio rerio (taxid: 7955)

>sp|Q5ZKQ7|GID8_CHICK Glucose-induced degradation protein 8 homolog OS=Gallus gallus GN=GID8 PE=2 SV=1

 Score =  202 bits (514), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/178 (53%), Positives = 137/178 (76%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
           IT++EW +KLN++ I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 84  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 144 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 201
           A +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENRE 187

Gallus gallus (taxid: 9031)

>sp|Q32L52|GID8_BOVIN Glucose-induced degradation protein 8 homolog OS=Bos taurus GN=GID8 PE=2 SV=1

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 138/178 (77%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 84  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 144 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 201
           A +GEE++  L E+ERT+ALLAF++  + P GDLL++ QR K  SEVN A+L  ++ E
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENRE 187

Bos taurus (taxid: 9913)

>sp|Q9D7M1|GID8_MOUSE Glucose-induced degradation protein 8 homolog OS=Mus musculus GN=Gid8 PE=2 SV=1

 Score =  200 bits (508), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 135/178 (75%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 84  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 144 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 201
           A +GEE++  L E+ERT+ALLAF+     P GDLL + QR K  SEVN A+L  ++ E
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENRE 187

Mus musculus (taxid: 10090)

>sp|Q9NWU2|GID8_HUMAN Glucose-induced degradation protein 8 homolog OS=Homo sapiens GN=GID8 PE=1 SV=1

 Score =  199 bits (506), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 134/178 (75%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 84  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 144 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 201
           A +GEE++  L E+ERT+ALLAF+     P GDLL   QR K  SEVN A+L  ++ E
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENRE 187

Homo sapiens (taxid: 9606)

>sp|Q10446|YDED_SCHPO Uncharacterized protein C12B10.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.13 PE=4 SV=1

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 103/182 (56%), Gaps = 10/182 (5%)

Query: 27  EEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKK 86
           E+WEK+   V I   D+N L++++LV +G  +AA+ F  E+          + +R+ + +
Sbjct: 20  EQWEKQTKSVHIDNSDVNSLILDYLVIQGDEEAAKTFAEEAQITDYYIPPYVKERLEICE 79

Query: 87  AVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIEL---------IRNGKVEEALE 137
            ++ G++  AI K+N+L PEILDTN +L F L + RL+EL           +  VE  L 
Sbjct: 80  LIKSGSINSAICKLNELEPEILDTNSELLFELLRLRLLELIREVVEEKDTSDLAVERCLN 139

Query: 138 FAQEELAPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLDISQRLKTASEVNAAILT 196
           FA E LAP    NQ FL  LE T++LL F   S  P + ++L+ SQR + A+  N +IL 
Sbjct: 140 FAHENLAPLAPSNQKFLNSLELTMSLLCFPPSSYSPALKNVLNYSQRERVANLANVSILK 199

Query: 197 SQ 198
           SQ
Sbjct: 200 SQ 201

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P69566|RANB9_MOUSE Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 43  MNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102
           + K+V ++LV  GY   AE F   +      +LA+I +R  ++K V  G + +AIE    
Sbjct: 294 IQKMVSSYLVHHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEAIETTQQ 353

Query: 103 LNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 134
           L P +L+ NP L F L+ ++ IE++ NG   E
Sbjct: 354 LYPSLLERNPNLLFTLKVRQFIEMV-NGTDSE 384

May act as an adapter protein to couple membrane receptors to intracellular signaling pathways. May be involved in signaling of ITGB2/LFA-1 and other integrins. Enhances HGF-MET signaling by recruiting Sos and activating the Ras pathway. Enhances dihydrotestosterone-induced transactivation activity of AR, as well as dexamethasone-induced transactivation activity of NR3C1, but not affect estrogen-induced transactivation (By similarity). Stabilizes TP73 isoform Alpha, probably by inhibiting its ubiquitination, and increases its proapoptotic activity. Inhibits the kinase activity of DYRK1A and DYRK1B. Inhibits FMR1 binding to RNA.

Mus musculus (taxid: 10090)

>sp|Q96S59|RANB9_HUMAN Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 43  MNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102
           + K+V ++LV  GY   AE F   +      +LA+I +R  ++K V  G + +AIE    
Sbjct: 369 IQKMVSSYLVHHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEAIETTQQ 428

Query: 103 LNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 134
           L P +L+ NP L F L+ ++ IE++ NG   E
Sbjct: 429 LYPSLLERNPNLLFTLKVRQFIEMV-NGTDSE 459

May act as an adapter protein to couple membrane receptors to intracellular signaling pathways. May be involved in signaling of ITGB2/LFA-1 and other integrins. Enhances HGF-MET signaling by recruiting Sos and activating the Ras pathway. Enhances dihydrotestosterone-induced transactivation activity of AR, as well as dexamethasone-induced transactivation activity of NR3C1, but not affect estrogen-induced transactivation. Stabilizes TP73 isoform Alpha, probably by inhibiting its ubiquitination, and increases its proapoptotic activity. Inhibits the kinase activity of DYRK1A and DYRK1B. Inhibits FMR1 binding to RNA.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
255560784	287	Protein C20orf11, putative [Ricinus comm	0.948	0.707	0.975	1e-109
224113997	242	predicted protein [Populus trichocarpa]	0.948	0.838	0.975	1e-109
449457706	242	PREDICTED: glucose-induced degradation p	1.0	0.884	0.934	1e-109
356555082	242	PREDICTED: UPF0559 protein-like [Glycine	0.948	0.838	0.960	1e-108
357446437	241	hypothetical protein MTR_2g012810 [Medic	0.948	0.842	0.960	1e-108
388505624	206	unknown [Medicago truncatula]	0.943	0.980	0.960	1e-108
388507964	241	unknown [Medicago truncatula]	0.948	0.842	0.955	1e-107
356549385	242	PREDICTED: UPF0559 protein-like [Glycine	0.948	0.838	0.955	1e-107
359494870	293	PREDICTED: UPF0559 protein-like [Vitis v	0.948	0.692	0.759	1e-100
296080906	294	unnamed protein product [Vitis vinifera]	0.948	0.690	0.756	1e-99

>gi|255560784|ref|XP_002521405.1| Protein C20orf11, putative [Ricinus communis] gi|223539304|gb|EEF40895.1| Protein C20orf11, putative [Ricinus communis]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/203 (97%), Positives = 200/203 (98%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLAEIEAMA SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 46  MSLFWIVIRQLAEIEAMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 105

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFR ESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 106 EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 165

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV+NCPVG+LLDI
Sbjct: 166 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVTNCPVGELLDI 225

Query: 181 SQRLKTASEVNAAILTSQSHEKD 203
           SQRLKTASEVNAAILTSQSHEKD
Sbjct: 226 SQRLKTASEVNAAILTSQSHEKD 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113997|ref|XP_002316637.1| predicted protein [Populus trichocarpa] gi|222859702|gb|EEE97249.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/203 (97%), Positives = 199/203 (98%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLAEIEAMA SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFWIVIRQLAEIEAMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKF+MESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFQMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QR IELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG LLDI
Sbjct: 121 QRFIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGGLLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKD 203
           SQRLKTASEVNAAILTSQS EKD
Sbjct: 181 SQRLKTASEVNAAILTSQSREKD 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457706|ref|XP_004146589.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus] gi|449488429|ref|XP_004158034.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/214 (93%), Positives = 201/214 (93%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQ AE EAMA SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFWIVIRQFAENEAMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFRMESG EP+IDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRMESGAEPEIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPV DLLDI
Sbjct: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVRDLLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKDFSQSSGQVMFM 214
           SQRLKTASEVNAAILTSQSHEKD    S   M M
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLM 214

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555082|ref|XP_003545868.1| PREDICTED: UPF0559 protein-like [Glycine max]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/203 (96%), Positives = 200/203 (98%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSL W+VIRQLAEIEAMA SKK+ITREEWEKKL+DVKIRKEDMNKLVMNFLVTEGYV+AA
Sbjct: 1   MSLLWLVIRQLAEIEAMAASKKLITREEWEKKLSDVKIRKEDMNKLVMNFLVTEGYVEAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFRMESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKD 203
           SQRLKTASEVNAAILTSQSHEKD
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKD 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446437|ref|XP_003593496.1| hypothetical protein MTR_2g012810 [Medicago truncatula] gi|355482544|gb|AES63747.1| hypothetical protein MTR_2g012810 [Medicago truncatula]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/203 (96%), Positives = 200/203 (98%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLA+IEAMA SKKVITREEWEKKLN+VKIRKEDMNKLVMNFLVTEG+VDAA
Sbjct: 1   MSLFWIVIRQLAQIEAMAASKKVITREEWEKKLNNVKIRKEDMNKLVMNFLVTEGFVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFR ESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGK+EEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKIEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKD 203
           SQRLKTASEVNAAILTSQSHEKD
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKD 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505624|gb|AFK40878.1| unknown [Medicago truncatula]

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/202 (96%), Positives = 199/202 (98%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLA+IEAMA SKKVITREEWEKKLN+VKIRKEDMNKLVMNFLVTEG+VDAA
Sbjct: 1   MSLFWIVIRQLAQIEAMAASKKVITREEWEKKLNNVKIRKEDMNKLVMNFLVTEGFVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFR ESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGK+EEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKIEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEK 202
           SQRLKTASEVNAAILTSQSHEK
Sbjct: 181 SQRLKTASEVNAAILTSQSHEK 202

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507964|gb|AFK42048.1| unknown [Medicago truncatula]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/203 (95%), Positives = 199/203 (98%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLA+IEAMA SKKVITREEWEKKLN+VKIRKEDMNKLVMNFLVTEG+VDAA
Sbjct: 1   MSLFWIVIRQLAQIEAMAASKKVITREEWEKKLNNVKIRKEDMNKLVMNFLVTEGFVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFR ESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGK+EEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKIEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKD 203
           SQRLKTASEVNAAILTSQ HEKD
Sbjct: 181 SQRLKTASEVNAAILTSQRHEKD 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549385|ref|XP_003543074.1| PREDICTED: UPF0559 protein-like [Glycine max]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/203 (95%), Positives = 199/203 (98%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLF + IRQLAEIEAMA SKK+ITREEWEKKL+DVKIRKEDMNKLVMNFLVTEGYV+AA
Sbjct: 1   MSLFLLEIRQLAEIEAMAASKKLITREEWEKKLSDVKIRKEDMNKLVMNFLVTEGYVEAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFRMESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKD 203
           SQRLKTASEVNAAILTSQSHEKD
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKD 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494870|ref|XP_002264581.2| PREDICTED: UPF0559 protein-like [Vitis vinifera]

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/254 (75%), Positives = 199/254 (78%), Gaps = 51/254 (20%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLF IVIR+L EIE+MA SKKVITREEWE+KLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFCIVIRELEEIESMASSKKVITREEWERKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 61  EKFRMESGTE-------------------------------------------------- 70
           EKFRMESGTE                                                  
Sbjct: 61  EKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEGYVDAAEKFRMESGT 120

Query: 71  -PDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN 129
            PDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN
Sbjct: 121 EPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN 180

Query: 130 GKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASE 189
           GKV+EALEFAQEELAPRGEENQSFLEELE+TVALLAFED SNCPVG+LLDISQRLKTASE
Sbjct: 181 GKVDEALEFAQEELAPRGEENQSFLEELEKTVALLAFEDFSNCPVGELLDISQRLKTASE 240

Query: 190 VNAAILTSQSHEKD 203
           VNAAILTSQSHEKD
Sbjct: 241 VNAAILTSQSHEKD 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296080906|emb|CBI18750.3| unnamed protein product [Vitis vinifera]

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 193/255 (75%), Positives = 199/255 (78%), Gaps = 52/255 (20%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLF IVIR+L EIE+MA SKKVITREEWE+KLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFCIVIRELEEIESMASSKKVITREEWERKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPE-------------- 106
           EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPE              
Sbjct: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEGYVDAAEKFRMESG 120

Query: 107 --------------------------------------ILDTNPQLFFHLQQQRLIELIR 128
                                                 ILDTNPQLFFHLQQQRLIELIR
Sbjct: 121 TEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR 180

Query: 129 NGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTAS 188
           NGKV+EALEFAQEELAPRGEENQSFLEELE+TVALLAFED SNCPVG+LLDISQRLKTAS
Sbjct: 181 NGKVDEALEFAQEELAPRGEENQSFLEELEKTVALLAFEDFSNCPVGELLDISQRLKTAS 240

Query: 189 EVNAAILTSQSHEKD 203
           EVNAAILTSQSHEKD
Sbjct: 241 EVNAAILTSQSHEKD 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2008460	243	AT1G61150 "AT1G61150" [Arabido	0.948	0.835	0.789	4.8e-78
DICTYBASE|DDB_G0279265	228	DDB_G0279265 "UPF0559 protein"	0.855	0.802	0.606	1.8e-55
ZFIN|ZDB-GENE-040426-1669	250	gid8a "GID complex subunit 8 h	0.929	0.796	0.467	5e-44
UNIPROTKB|Q5ZKQ7	228	GID8 "Glucose-induced degradat	0.831	0.780	0.488	6.4e-44
UNIPROTKB|Q32L52	228	GID8 "Glucose-induced degradat	0.831	0.780	0.483	8.1e-44
MGI|MGI:1923675	228	Gid8 "GID complex subunit 8 ho	0.831	0.780	0.483	2.2e-43
UNIPROTKB|Q9NWU2	228	GID8 "Glucose-induced degradat	0.831	0.780	0.483	3.5e-43
TAIR|locus:2137926	224	AT4G09300 "AT4G09300" [Arabido	0.850	0.812	0.516	1.1e-41
TAIR|locus:2197404	277	AT1G11110 "AT1G11110" [Arabido	0.864	0.667	0.494	9.6e-41
ASPGD|ASPL0000064925	271	AN7501 [Emericella nidulans (t	0.808	0.638	0.414	6.9e-31

TAIR|locus:2008460 AT1G61150 "AT1G61150" [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 161/204 (78%), Positives = 173/204 (84%)

Query:     1 MSLFWIVIRQLAEI-EAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDA 59
             MSLF I I QL E  E MA SKK+ITREEWEKKLN VK+RKEDMN LVMNFLVTEGYV+A
Sbjct:     1 MSLFRIFINQLEEDDEDMATSKKMITREEWEKKLNAVKLRKEDMNTLVMNFLVTEGYVEA 60

Query:    60 AEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQ 119
             AEKF+ ESGT+P+IDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNP+LFFHLQ
Sbjct:    61 AEKFQRESGTKPEIDLATITDRMAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQ 120

Query:   120 QQRLIELIRNGKVXXXXXXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLD 179
             QQRLIELIR GK             PRGEENQ+FLEELE+TVALL F+D S CPV +LLD
Sbjct:   121 QQRLIELIRQGKTEEALEFAQEELAPRGEENQAFLEELEKTVALLVFDDASTCPVKELLD 180

Query:   180 ISQRLKTASEVNAAILTSQSHEKD 203
             +S RLKTASEVNAAILTSQSHEKD
Sbjct:   181 LSHRLKTASEVNAAILTSQSHEKD 204

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279265 DDB_G0279265 "UPF0559 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 111/183 (60%), Positives = 136/183 (74%)

Query:    21 KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITD 80
             KKVI+  EW+ KL +V I K D+NKLVMN+LV EGY +AA KF+ ES T+  +DLA+I D
Sbjct:    11 KKVISTSEWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLASIAD 70

Query:    81 RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXX 140
             RMA++ A+QCG+VE  IE VNDLNPEILDTNPQL+FHLQQQ+LIELIR G          
Sbjct:    71 RMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQ 130

Query:   141 XXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSH 200
                 P+GEEN  FLEELE+T++LL FED +  P+  LLD SQR KTA E+N+AIL SQS 
Sbjct:   131 DELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQ 190

Query:   201 EKD 203
             +KD
Sbjct:   191 DKD 193

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1669 gid8a "GID complex subunit 8 homolog a (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 95/203 (46%), Positives = 138/203 (67%)

Query:     3 LFWIVIRQLA--EIEAMAMSKKV--ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVD 58
             + ++VI  L       M+ S+K   IT+EEW  KLN+V I++ DMN+L+MN+LVTEG+ +
Sbjct:     7 MIFVVISCLVYPSTSVMSYSEKPEDITKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKE 66

Query:    59 AAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHL 118
             AAEKFRMESG EP++DL ++ +R+ +++ V  G +++AI  +N L+PE+LDTN  L+FHL
Sbjct:    67 AAEKFRMESGIEPNVDLDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHL 126

Query:   119 QQQRLIELIRNGKVXXXXXXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLL 178
             QQQ LIELIR  +              +GEE++  L E+ERT+ALLAF++    P GDLL
Sbjct:   127 QQQHLIELIRLRETEAALEFAQSQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLL 186

Query:   179 DISQRLKTASEVNAAILTSQSHE 201
             ++ QR K  SEVN A+L  ++ E
Sbjct:   187 NMMQRQKVWSEVNQAVLDYENRE 209

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5ZKQ7 GID8 "Glucose-induced degradation protein 8 homolog" [Gallus gallus (taxid:9031)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 87/178 (48%), Positives = 127/178 (71%)

Query:    24 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
             IT++EW +KLN++ I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    84 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 143
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   144 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 201
               +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENRE 187

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q32L52 GID8 "Glucose-induced degradation protein 8 homolog" [Bos taurus (taxid:9913)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 86/178 (48%), Positives = 128/178 (71%)

Query:    24 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    84 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 143
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   144 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 201
               +GEE++  L E+ERT+ALLAF++  + P GDLL++ QR K  SEVN A+L  ++ E
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENRE 187

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1923675 Gid8 "GID complex subunit 8 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 86/178 (48%), Positives = 125/178 (70%)

Query:    24 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    84 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 143
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   144 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 201
               +GEE++  L E+ERT+ALLAF+     P GDLL + QR K  SEVN A+L  ++ E
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENRE 187

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9NWU2 GID8 "Glucose-induced degradation protein 8 homolog" [Homo sapiens (taxid:9606)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 86/178 (48%), Positives = 124/178 (69%)

Query:    24 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    84 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 143
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   144 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 201
               +GEE++  L E+ERT+ALLAF+     P GDLL   QR K  SEVN A+L  ++ E
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENRE 187

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2137926 AT4G09300 "AT4G09300" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 96/186 (51%), Positives = 123/186 (66%)

Query:    17 MAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLA 76
             M   K V+T E+WE KL+DV+I  EDMN+LVMN LV EGY +AAEKF+ ES T P+ DLA
Sbjct:     1 METPKIVVTSEDWESKLSDVEILIEDMNRLVMNLLVAEGYREAAEKFKEESITMPEEDLA 60

Query:    77 TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXX 136
             ++ +R+ V KA++  N+EDAIEK+N LNPEI+ T+    FHL QQ LIELIR  K     
Sbjct:    61 SMNERLEVIKAIESRNLEDAIEKLNALNPEIIKTS----FHLHQQMLIELIREKKTEEAV 116

Query:   137 XXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILT 196
                     P  EEN++   ELE+TV +L  E + NCP  +L   SQ ++TAS VN AI T
Sbjct:   117 AFAQEKLAPLAEENEALQRELEKTVCILVTEGLPNCPSRELFHNSQWIRTASHVNEAIHT 176

Query:   197 SQSHEK 202
             SQ+ EK
Sbjct:   177 SQTGEK 182

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197404 AT1G11110 "AT1G11110" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 97/196 (49%), Positives = 134/196 (68%)

Query:    10 QLAEIEAMAMS---KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRME 66
             Q++E E   +    KK+I  + WE+ L   +IRKEDMN+LVMNFLV EGY++A EKF+ E
Sbjct:    39 QISENEEFVIQEQPKKLIMSDVWEQYLTTAEIRKEDMNRLVMNFLVVEGYLEAVEKFQKE 98

Query:    67 SGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIEL 126
             SGT+  + +A+I+DR+AVK+ ++ G++EDA+EK+N +NPEIL TN    F L QQR IE 
Sbjct:    99 SGTK-QVGVASISDRLAVKRDIESGDLEDAVEKLNAINPEILKTN----FSLNQQRFIER 153

Query:   127 IRNG-KVXXXXXXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGD--LLDISQR 183
             IR G  +            P  E+N +FLEELE+T+A+L F D+ + P  +  LLD S+ 
Sbjct:   154 IRIGVTIKETFNFAEKELKPLVEQNLAFLEELEKTMAILRFRDLPDIPEAERELLDNSRW 213

Query:   184 LKTASEVNAAILTSQS 199
              KTA+EVNAAILTSQ+
Sbjct:   214 FKTAAEVNAAILTSQT 229

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000064925 AN7501 [Emericella nidulans (taxid:162425)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 75/181 (41%), Positives = 112/181 (61%)

Query:    25 TREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAV 84
             T   +E+K+++VK  K DMN+LVM++LVT GY  AA+KF +E+  EP +D+ +I +R+ +
Sbjct:    17 TWHHFERKVDEVKPSKTDMNRLVMDYLVTNGYPAAAQKFALEANIEP-VDVESIRERVEI 75

Query:    85 KKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN------GKVXXXXXX 138
             + A+  GN++ AIEK+N+LNP+ILD NP L F L + +L+ELIR+      G +      
Sbjct:    76 RTAIYSGNIQAAIEKINELNPQILDENPSLHFSLLRLQLVELIRSCSVNPDGDITPALEF 135

Query:   139 XXXXXXPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLDISQRLKTASEVNAAILTS 197
                   PR   N  FLE+LE+T+ALL +   +  P +  LL    R    ++VNAAIL  
Sbjct:   136 ATSQLAPRAPTNPQFLEDLEKTLALLIYPKENLTPSLAPLLHSDLRRDIYAKVNAAILQD 195

Query:   198 Q 198
             Q
Sbjct:   196 Q 196

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NWU2	GID8_HUMAN	No assigned EC number	0.5337	0.8317	0.7807	yes	no
Q54X16	GID8_DICDI	No assigned EC number	0.6557	0.8551	0.8026	yes	no
Q32L52	GID8_BOVIN	No assigned EC number	0.5337	0.8317	0.7807	yes	no
Q9D7M1	GID8_MOUSE	No assigned EC number	0.5337	0.8317	0.7807	yes	no
Q5ZKQ7	GID8_CHICK	No assigned EC number	0.5393	0.8317	0.7807	yes	no
Q6PC55	GID8_DANRE	No assigned EC number	0.5401	0.8644	0.8114	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	1e-34
smart00757	99	smart00757, CRA, CT11-RanBPM	4e-20
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	8e-12
pfam08513	27	pfam08513, LisH, LisH	7e-07
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	3e-06

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score =  119 bits (302), Expect = 1e-34
 Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 3/128 (2%)

Query: 77  TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEAL 136
              +R  +++++  G++E+A+E  N+  PE+L  N  L F L+ Q+ IELIR GK+ EAL
Sbjct: 1   VFKERNKIRESLLNGDLEEALEWCNENKPELLKINSNLEFELRLQQFIELIREGKILEAL 60

Query: 137 EFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVGDLLDISQRLKTASEVNAAIL 195
           E+A+E LAP   E    L+E+++ + LLAF D ++  P   LL  S+  K A+E N AIL
Sbjct: 61  EYARENLAPFFNE--QHLKEIQKLMGLLAFPDPTDSSPYKSLLSPSRWEKLANEFNRAIL 118

Query: 196 TSQSHEKD 203
                  +
Sbjct: 119 KLLGLSSE 126

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|214806 smart00757, CRA, CT11-RanBPM

 Score = 81.2 bits (201), Expect = 4e-20
 Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 1/73 (1%)

Query: 130 GKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVGDLLDISQRLKTAS 188
           GK+EEAL +A+E LAP  +E++ FL+ELE+T+ALLA+ D +   P  +LL  SQR K A 
Sbjct: 1   GKIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAE 60

Query: 189 EVNAAILTSQSHE 201
           E+N+AIL     +
Sbjct: 61  ELNSAILELLHGK 73

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi). Length = 99

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 58.0 bits (141), Expect = 8e-12
 Identities = 19/58 (32%), Positives = 39/58 (67%)

Query: 77  TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 134
              +R  +++ +  G+ ++A+E ++ L P +L+ N +L F L++Q+ +EL+R GK+EE
Sbjct: 1   EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|149534 pfam08513, LisH, LisH

 Score = 43.8 bits (105), Expect = 7e-07
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 41 EDMNKLVMNFLVTEGYVDAAEKFRMES 67
          E++N+L+ ++LV  GY + AE F  ES
Sbjct: 1  EELNRLIYDYLVKSGYKETAEAFAKES 27

The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 42.4 bits (101), Expect = 3e-06
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 38 IRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71
          I + ++N+L++ +L+  GY + AE  + ESG   
Sbjct: 1  ISRSELNRLILEYLLRNGYEETAETLQKESGLSL 34

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	100.0
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	99.97
KOG0396	389	consensus Uncharacterized conserved protein [Funct	99.97
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	99.94
smart00757	99	CRA CT11-RanBPM. protein-protein interaction domai	99.69
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	99.38
KOG0293	519	consensus WD40 repeat-containing protein [Function	98.77
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.43
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	98.2
KOG1477	469	consensus SPRY domain-containing proteins [General	98.18
COG5109	396	Uncharacterized conserved protein, contains RING Z	98.1
KOG0275	508	consensus Conserved WD40 repeat-containing protein	96.12
KOG1333	241	consensus Uncharacterized conserved protein [Funct	91.25
PF09398	81	FOP_dimer: FOP N terminal dimerisation domain; Int	86.61
PF04494	142	TFIID_90kDa: WD40 associated region in TFIID subun	82.03

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=100.00  E-value=5.8e-39  Score=263.22  Aligned_cols=191  Identities=57%  Similarity=0.838  Sum_probs=186.4

Q ss_pred             cCCCHHHHHHHHhccCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHHCCCHHHHHHHH
Q 028054           22 KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP-DIDLATITDRMAVKKAVQCGNVEDAIEKV  100 (214)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~-~~~~~~~~~r~~I~~~I~~g~i~~Al~~~  100 (214)
                      +.+++++|.+.+.++.+..+.+|+||++||+++||.++|..|++|+|+++ ..|.+.+..|.+|+.+|..|+++.|++.+
T Consensus         8 ~~~~~~~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~i   87 (228)
T KOG2659|consen    8 SFSTKEEWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKV   87 (228)
T ss_pred             ccCchhhhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999987 88999999999999999999999999999


Q ss_pred             HhhChhhhhcCCchhHhhHHHHHHHHHHcCChHHHHHHHHHhcCccccccHHHHHHHHHHHhHhhccCCCCCchhhhcCh
Q 028054          101 NDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI  180 (214)
Q Consensus       101 ~~~~~~L~~~~s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l~~~~~~~~~~~~~i~~l~~lL~~~~~~~sp~~~l~~~  180 (214)
                      +++.|.++..+..|.|.|++|++|||||.|...+||+|+|++++|++..+++++.+++++|++|+|+++..||+..+++.
T Consensus        88 n~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~  167 (228)
T KOG2659|consen   88 NQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQ  167 (228)
T ss_pred             HHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhCCCCCCCCchhhhhh
Q 028054          181 SQRLKTASEVNAAILTSQSHEKDFSQSSGQVM  212 (214)
Q Consensus       181 ~~r~~la~~~n~~iL~~~g~~~~~~L~~ll~~  212 (214)
                      +.|.++|+.+|++||.+.|....|+|+.++|.
T Consensus       168 s~R~kvA~~vN~aiL~~~~~~~~~~l~~llk~  199 (228)
T KOG2659|consen  168 SLRQKVASEVNSAILASQEHESEPKLPFLLKL  199 (228)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence            99999999999999999999999999999864

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=99.97  E-value=2.6e-30  Score=201.42  Aligned_cols=132  Identities=36%  Similarity=0.554  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhhChhhhhcCCchhHhhHHHHHHHHHHcCChHHHHHHHHHhcCccccccHHHHHHH
Q 028054           78 ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEEL  157 (214)
Q Consensus        78 ~~~r~~I~~~I~~g~i~~Al~~~~~~~~~L~~~~s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l~~~~~~~~~~~~~i  157 (214)
                      +..|+.|+++|.+||+++|++||++++|.+++.++.++|.|++|+||++|++|++.+||+|||+++.|+..   ...+++
T Consensus         2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~---~~~~~l   78 (145)
T PF10607_consen    2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFND---EFLEEL   78 (145)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHH---HHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999977664   458999


Q ss_pred             HHHHhHhhccCCCC---CchhhhcChhhHHHHHHHHHHHHHhhCCCCCCCCchhhhhh
Q 028054          158 ERTVALLAFEDVSN---CPVGDLLDISQRLKTASEVNAAILTSQSHEKDFSQSSGQVM  212 (214)
Q Consensus       158 ~~l~~lL~~~~~~~---sp~~~l~~~~~r~~la~~~n~~iL~~~g~~~~~~L~~ll~~  212 (214)
                      +++|++|+|+++++   +||++++++.+|+.+|+.||+++|..+|.+++|+|+.+++.
T Consensus        79 ~~~~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~  136 (145)
T PF10607_consen   79 KKLMSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKA  136 (145)
T ss_pred             HHHHHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHH
Confidence            99999999999997   79999999999999999999999999999999999998874

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=7.3e-30  Score=220.00  Aligned_cols=171  Identities=20%  Similarity=0.290  Sum_probs=162.8

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHhhChhhhhcCCchhHhh
Q 028054           39 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHL  118 (214)
Q Consensus        39 ~~~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Al~~~~~~~~~L~~~~s~L~F~L  118 (214)
                      +++.++++|.+|+.|+||++||..|.++++++...|.+.+...+.|+++|+.|++.+|+.||++|...|.+.+|.++|++
T Consensus       114 ~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~l  193 (389)
T KOG0396|consen  114 PRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQL  193 (389)
T ss_pred             HHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHH
Confidence            55889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhcCccccccHHHHHHHHHHHhHhhccCCC-CCchhhhcChhhHHHHHHHHHHHHHhh
Q 028054          119 QQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVS-NCPVGDLLDISQRLKTASEVNAAILTS  197 (214)
Q Consensus       119 ~~q~fIeli~~~~~~~Ai~yar~~l~~~~~~~~~~~~~i~~l~~lL~~~~~~-~sp~~~l~~~~~r~~la~~~n~~iL~~  197 (214)
                      +.|+|||||+.++..+||+|+|++|+|++..+   .++++.+||+|+|+.-. .++|..+++..||+.+++.|-...+..
T Consensus       194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~---~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l~~lF~s~a~~l  270 (389)
T KOG0396|consen  194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSH---KSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVLADLFLSEALKL  270 (389)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhh---HHHHHHHHHhhcCccccCcccccCcccHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999999999999766   79999999999999855 467999999999999999999999999


Q ss_pred             CCCCCCCCchhhhhh
Q 028054          198 QSHEKDFSQSSGQVM  212 (214)
Q Consensus       198 ~g~~~~~~L~~ll~~  212 (214)
                      .|.+-.|+|-..+.+
T Consensus       271 ~~i~~~~~L~~~l~~  285 (389)
T KOG0396|consen  271 FGIPINPALTIYLQA  285 (389)
T ss_pred             hCCCCCcHHHHHHHh
Confidence            999999999887764

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1e-25  Score=196.31  Aligned_cols=173  Identities=19%  Similarity=0.281  Sum_probs=157.3

Q ss_pred             ccCCCHHH-HHHHHHHHHHhhCHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHHHHHHCCCHHHHHHHHHhhChhhhhcC
Q 028054           35 DVKIRKED-MNKLVMNFLVTEGYVDAAEKFRMESGTEPD--IDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTN  111 (214)
Q Consensus        35 ~~~~~~~~-l~~lI~~yL~~~Gy~eta~~f~~E~~~~~~--~~~~~~~~r~~I~~~I~~g~i~~Al~~~~~~~~~L~~~~  111 (214)
                      ++..+... +|.+|..|++|+|..|+|..|++|+|....  .....|.+.++|.++|++||+++|++|+..++..|.+.+
T Consensus       110 ~v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~  189 (394)
T KOG2817|consen  110 SVDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS  189 (394)
T ss_pred             CcChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc
Confidence            45555544 599999999999999999999999998753  456799999999999999999999999999999999999


Q ss_pred             CchhHhhHHHHHHHHHHcCChH--HHHHHHHHhcCccccccHHHHHHHHHHHhHhhccCC--CCCchhhhcChhhHHHHH
Q 028054          112 PQLFFHLQQQRLIELIRNGKVE--EALEFAQEELAPRGEENQSFLEELERTVALLAFEDV--SNCPVGDLLDISQRLKTA  187 (214)
Q Consensus       112 s~L~F~L~~q~fIeli~~~~~~--~Ai~yar~~l~~~~~~~~~~~~~i~~l~~lL~~~~~--~~sp~~~l~~~~~r~~la  187 (214)
                      +.|+|.||.++|+++++.|.-.  +||.|||++++||+.++   .++||.+|++|.|-..  +++||.+++++..|..+.
T Consensus       190 s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~---~~eIQklm~sl~~l~~gl~~spy~~~ls~~~w~~~~  266 (394)
T KOG2817|consen  190 SSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADH---LREIQKLMGSLLYLRNGLEKSPYSEILSPKLWKELT  266 (394)
T ss_pred             ccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch---HHHHHHHHHHHHHHHcCCCCCChHHHhCHHHHHHHH
Confidence            9999999999999999998765  99999999999999766   7999999999999775  689999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCCCchhhh
Q 028054          188 SEVNAAILTSQSHEKDFSQSSGQ  210 (214)
Q Consensus       188 ~~~n~~iL~~~g~~~~~~L~~ll  210 (214)
                      .+|-+..|...|.+.+++|-.++
T Consensus       267 ~~f~r~ycallg~s~eSPL~v~v  289 (394)
T KOG2817|consen  267 EEFTREYCALLGISVESPLSVLV  289 (394)
T ss_pred             HHHHHHHHHHcCCCccCcHHHHH
Confidence            99999999999999998875543

>smart00757 CRA CT11-RanBPM

Probab=99.69  E-value=1.3e-16  Score=116.19  Aligned_cols=82  Identities=43%  Similarity=0.536  Sum_probs=77.8

Q ss_pred             ChHHHHHHHHHhcCccccccHHHHHHHHHHHhHhhccCC-CCCchhhhcChhhHHHHHHHHHHHHHhhC-CCCCCCCchh
Q 028054          131 KVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV-SNCPVGDLLDISQRLKTASEVNAAILTSQ-SHEKDFSQSS  208 (214)
Q Consensus       131 ~~~~Ai~yar~~l~~~~~~~~~~~~~i~~l~~lL~~~~~-~~sp~~~l~~~~~r~~la~~~n~~iL~~~-g~~~~~~L~~  208 (214)
                      ++.+||+|||++++++..+++.+.++++++|++|+|+++ +.+||++++++++|+.+|+.||+++|... |.+.+|+|+.
T Consensus         2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~~~s~L~~   81 (99)
T smart00757        2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKSSESPLEI   81 (99)
T ss_pred             cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence            578999999999999998888778999999999999999 88999999999999999999999999999 9999999999


Q ss_pred             hhhh
Q 028054          209 GQVM  212 (214)
Q Consensus       209 ll~~  212 (214)
                      +++.
T Consensus        82 ~~~~   85 (99)
T smart00757       82 LLSA   85 (99)
T ss_pred             HHHH
Confidence            9875

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)

>smart00668 CTLH C-terminal to LisH motif

Probab=99.38  E-value=1e-12  Score=86.49  Aligned_cols=55  Identities=31%  Similarity=0.669  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhhChhhhhcCCchhHhhHHHHHHHHHHcCCh
Q 028054           78 ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKV  132 (214)
Q Consensus        78 ~~~r~~I~~~I~~g~i~~Al~~~~~~~~~L~~~~s~L~F~L~~q~fIeli~~~~~  132 (214)
                      +..+..|+++|.+|+|++|++||++++|.+.+.++.+.|.|++|+|+|+++.|+.
T Consensus         2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence            5678999999999999999999999999999999999999999999999998864

Alpha-helical motif of unknown function.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.77  E-value=5.8e-08  Score=86.03  Aligned_cols=130  Identities=15%  Similarity=0.233  Sum_probs=109.3

Q ss_pred             HhhhcccCCCHHHHHHHHhccCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHHCCCHH
Q 028054           16 AMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP-DIDLATITDRMAVKKAVQCGNVE   94 (214)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~-~~~~~~~~~r~~I~~~I~~g~i~   94 (214)
                      +..++|+.|++.|+              .+++.+.|+.-||.+++..++.|+|+.. .++      -+.+.++++.|+|+
T Consensus         7 ~~l~~k~likk~ef--------------i~il~q~l~slgy~~S~~~lE~es~ll~~tat------~klf~q~vlqg~w~   66 (519)
T KOG0293|consen    7 EILGSKGLIKKGEF--------------IRILWQILYSLGYDHSSPLLEWESGLLIPTAT------TKLFDQQVLQGQWD   66 (519)
T ss_pred             hhhhhhceeccchh--------------hHhHHHHHHhcCccccchhhHHhhCcccccch------HHHHHHHHHcccHH
Confidence            46788999999999              8999999999999999999999999853 333      36688999999999


Q ss_pred             HHHHHHHhhChhhhhcCCchhHhhHHHHHHHHHHcCChHHHHHHHHHhcCccccccHHHHHHHHHHHhHhhccCC
Q 028054           95 DAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV  169 (214)
Q Consensus        95 ~Al~~~~~~~~~L~~~~s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l~~~~~~~~~~~~~i~~l~~lL~~~~~  169 (214)
                      .++.-.....-+..++.....|.+.+|.|+|+++.|++..|+...|..+.+....    .+++.++.+.|++++.
T Consensus        67 q~v~~~~~i~~~de~~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr~~----~kk~~el~~sll~sn~  137 (519)
T KOG0293|consen   67 QQVMSLVRISFEDERNRKEAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLRKN----KKKFHELASSLLVSND  137 (519)
T ss_pred             HHHHHHhhccCcchhhhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhhhh----HHHHHHHHHHHhcccc
Confidence            9998887663333455578999999999999999999999999999877776543    4788899999998874

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.43  E-value=3.8e-07  Score=50.92  Aligned_cols=27  Identities=37%  Similarity=0.811  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHh
Q 028054           41 EDMNKLVMNFLVTEGYVDAAEKFRMES   67 (214)
Q Consensus        41 ~~l~~lI~~yL~~~Gy~eta~~f~~E~   67 (214)
                      +.||.+|.+||.++||.+||.+|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            468999999999999999999999985

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=98.20  E-value=3.5e-06  Score=48.73  Aligned_cols=32  Identities=31%  Similarity=0.754  Sum_probs=29.0

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCC
Q 028054           39 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE   70 (214)
Q Consensus        39 ~~~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~   70 (214)
                      .+..++++|++||.++||.+|+.+|.+|+|+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            35678999999999999999999999999974

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]

Probab=98.18  E-value=5.7e-07  Score=82.53  Aligned_cols=170  Identities=23%  Similarity=0.167  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHhCCCCC--c-----cHHH-----HHHHHHHHHHHHCCCHHHHHHHHHhhChhhhh
Q 028054           42 DMNKLVMNFLVTEGYVDAAEKFRMESGTEPD--I-----DLAT-----ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILD  109 (214)
Q Consensus        42 ~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~~--~-----~~~~-----~~~r~~I~~~I~~g~i~~Al~~~~~~~~~L~~  109 (214)
                      .....+..|+++.|+.+++..++..+.-...  .     ..+.     -..+.....-+-.+.+..+.+.+.+..+....
T Consensus       251 l~t~~~~~~~l~~~~~~s~~~~s~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~  330 (469)
T KOG1477|consen  251 LSTVPYPYFLLPGGYEESIAYFSTGARRFNDPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAALIPTYRK  330 (469)
T ss_pred             ccCCCccceecCcchhhhhhhhcchhhccCCcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhcccccccccc
Confidence            3446888999999999999999987653211  0     0111     01244444445555666666666655555444


Q ss_pred             -------cCCchhHhhHHHHHHHHHHcCChHHHHHHHHHhcCcccc--ccHHHHHHHHHHHhHhhccCCCCCchhhhcCh
Q 028054          110 -------TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGE--ENQSFLEELERTVALLAFEDVSNCPVGDLLDI  180 (214)
Q Consensus       110 -------~~s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l~~~~~--~~~~~~~~i~~l~~lL~~~~~~~sp~~~l~~~  180 (214)
                             ..+...+.++|+.++.+.+-+.+...+++.+..+++...  ......+.+...++||+|++|..||...+.++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~s~~g~~~~~  410 (469)
T KOG1477|consen  331 VGQVFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEESPVGYLLDP  410 (469)
T ss_pred             cceeecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCcccCccccccCc
Confidence                   346789999999999999999999999999999988765  33345789999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhCCCCCCCCchhhhh
Q 028054          181 SQRLKTASEVNAAILTSQSHEKDFSQSSGQV  211 (214)
Q Consensus       181 ~~r~~la~~~n~~iL~~~g~~~~~~L~~ll~  211 (214)
                      ..++-+++.+|.++|...+.++++.|+.++.
T Consensus       411 ~~~e~v~~~~n~~il~t~~~~~~~~l~~~l~  441 (469)
T KOG1477|consen  411 IQREPVAEALNSAILETDNNSKDPDLERVLS  441 (469)
T ss_pred             ccchhHHhhhcccccccCCCCccchhhhhhc
Confidence            9999999999999999999999999887764

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.10  E-value=9.9e-05  Score=63.68  Aligned_cols=190  Identities=9%  Similarity=-0.009  Sum_probs=138.5

Q ss_pred             hhhcccCCCHHHHHHHHhccCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHHHCCCHHH
Q 028054           17 MAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPD-IDLATITDRMAVKKAVQCGNVED   95 (214)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~~-~~~~~~~~r~~I~~~I~~g~i~~   95 (214)
                      ....+..|+++.. +.+-........++.+...++.++|-..-+..|+.+.|..+. ...+.|...+.|.+.|.+.+...
T Consensus        78 ~~~~~~nFd~~~~-n~~~~f~~~~v~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k~~~l  156 (396)
T COG5109          78 EDCRPANFDVQVG-NQIYPFSTQTVTYLVVYYLLENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEKSTFL  156 (396)
T ss_pred             HhhccccCCHHHH-hhcCCCccceeeehHHHHHHHhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccchhHh
Confidence            3444555666655 334445555566677777778888888899999999998754 44689999999999999999999


Q ss_pred             HHHHHHhhChhhhhcCCchhHhhHHHHHHHHHH-cCChHHHHHHHHHhcCccccccHHHHHHHHHHHhHhhccCC-----
Q 028054           96 AIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR-NGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV-----  169 (214)
Q Consensus        96 Al~~~~~~~~~L~~~~s~L~F~L~~q~fIeli~-~~~~~~Ai~yar~~l~~~~~~~~~~~~~i~~l~~lL~~~~~-----  169 (214)
                      -++|. +....+.+.++..++.+.......+.. ..++.+|+.++++.++.|...|   ...++.++-.+.+.+.     
T Consensus       157 ~iE~~-Qi~gyl~kgdtesel~l~~~~~esl~l~hk~~~~a~r~c~t~~a~f~~kh---~~dv~~~~~~l~nap~dcfrh  232 (396)
T COG5109         157 LIEFL-QIEGYLSKGDTESELELYLVSHESLLLIHKRYDEALRLCFTKLASFVPKH---IQDVKPLLRFLVNAPTDCFRH  232 (396)
T ss_pred             HHHHH-HhcCccccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHcCchHHhhh
Confidence            99999 455667776777777666665554332 3379999999999999998655   6778888877766432     


Q ss_pred             -CC-C-----c-h-hhhc-------C--hhhHHHHHHHHHHHHHhhCCCCCCCCchhhhh
Q 028054          170 -SN-C-----P-V-GDLL-------D--ISQRLKTASEVNAAILTSQSHEKDFSQSSGQV  211 (214)
Q Consensus       170 -~~-s-----p-~-~~l~-------~--~~~r~~la~~~n~~iL~~~g~~~~~~L~~ll~  211 (214)
                       ++ +     | . +.++       |  ..-|..+...|-+..|...|++-+++|..++.
T Consensus       233 rekelmqnI~~~l~ksligqPiEdIDkvnk~~k~l~~lF~~eycaa~gm~~~spL~~~v~  292 (396)
T COG5109         233 REKELMQNIQEALKKSLIGQPIEDIDKVNKSRKKLIELFKSEYCAANGMPNRSPLRELVE  292 (396)
T ss_pred             cchhHHHHHHHHHHHhhcCCcHHHHHHhhhhHHHHHHHHHHHHHHhcCCCccChHHHHHH
Confidence             11 0     1 0 1111       1  24689999999999999999999999877654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=96.12  E-value=0.082  Score=46.47  Aligned_cols=140  Identities=17%  Similarity=0.236  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHhhChhhhhcCCchhHh
Q 028054           38 IRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFH  117 (214)
Q Consensus        38 ~~~~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Al~~~~~~~~~L~~~~s~L~F~  117 (214)
                      +....+.++|.+||-.+..-.|.++|.+|+++.. .-   ........+.|-+|.||..+.-++...-     ...-.-.
T Consensus         5 iessdVIrli~QflKE~~L~rtl~tLQeEt~VSL-NT---VDSvd~Fv~dI~sG~WD~VL~~vqsLKL-----P~kkL~d   75 (508)
T KOG0275|consen    5 IESSDVIRLIEQFLKENSLHRTLQTLQEETNVSL-NT---VDSVDGFVNDINSGHWDTVLKTVQSLKL-----PDKKLID   75 (508)
T ss_pred             eecchHHHHHHHHHhhhhHHHHHHHHHHhhccce-ee---chhHHHHHHhcccCchHHHHHHHHhccC-----chhHHHH
Confidence            3445678999999999999999999999999752 11   1122347789999999999998876542     1233457


Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHHhcCccc---cccHHHHHHHHHHHhHhh--ccCCCCCchhhhcChhhHHHHHHHHH
Q 028054          118 LQQQRLIELIRNGKVEEALEFAQEELAPRG---EENQSFLEELERTVALLA--FEDVSNCPVGDLLDISQRLKTASEVN  191 (214)
Q Consensus       118 L~~q~fIeli~~~~~~~Ai~yar~~l~~~~---~~~~~~~~~i~~l~~lL~--~~~~~~sp~~~l~~~~~r~~la~~~n  191 (214)
                      |+-|-.+|+|.-+.+..|-..+|+. .|..   ...|+   ..-++=.+|.  |.||.+ .|.+--...+|..+|..+.
T Consensus        76 LYEqivlEliELREL~tAR~~lRQT-dpM~~lKQ~~pe---Ry~~lE~ll~R~YFDp~E-aY~dssKEkrRa~IAQ~ls  149 (508)
T KOG0275|consen   76 LYEQIVLELIELRELGTARSLLRQT-DPMIMLKQIQPE---RYIRLENLLNRSYFDPRE-AYGDSSKEKRRAVIAQALS  149 (508)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhcc-CceehhhccChH---HHHHHHHHhcccccChhh-hcCcchHHHHHHHHHHHhc
Confidence            8999999999988887787777753 2222   22233   3333333443  444432 2444333556677776654

>KOG1333 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.25  E-value=1.8  Score=35.69  Aligned_cols=103  Identities=16%  Similarity=0.196  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHCCCHHHHHHHHHhhChhhhh----cC----C
Q 028054           41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILD----TN----P  112 (214)
Q Consensus        41 ~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Al~~~~~~~~~L~~----~~----s  112 (214)
                      +.++.+|-+||+-.|+.-|.++|-.|...........=...-+..++|...|++.--..=.....+++.    ..    .
T Consensus         6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~frvdrivdq~~~a~q~~Dl~aLr~~W~~l~~r~Fs~Le~~y~~~~~   85 (241)
T KOG1333|consen    6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKGFRVDRIVDQLQQAMQVYDLAALRDYWSYLERRLFSRLEDIYRPTIH   85 (241)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            456899999999999999999998887654222222223345567778888887654433322223332    11    2


Q ss_pred             chhHhhHHHHHHHHHHcCChHHHHHHHHHhc
Q 028054          113 QLFFHLQQQRLIELIRNGKVEEALEFAQEEL  143 (214)
Q Consensus       113 ~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l  143 (214)
                      .++--+.+...+--+.++..++|=+|.++.-
T Consensus        86 kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a  116 (241)
T KOG1333|consen   86 KLETSLFRFYLVYTIQTNRNDKAQEFFAKQA  116 (241)
T ss_pred             HHHHHHHHHHHhhhhhcCChHHHHHHHHHHH
Confidence            4666777778888889999999999988743

>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes

Probab=86.61  E-value=1.6  Score=30.67  Aligned_cols=30  Identities=23%  Similarity=0.288  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHhCCCC
Q 028054           42 DMNKLVMNFLVTEGYVDAAEKFRMESGTEP   71 (214)
Q Consensus        42 ~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~   71 (214)
                      .++.||.+||--.||.-|+..|..|+|...
T Consensus        20 Li~eLIrEyLef~~l~~TlsVf~~Es~~~~   49 (81)
T PF09398_consen   20 LINELIREYLEFNNLDYTLSVFQPESGQPE   49 (81)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHT-TT
T ss_pred             HHHHHHHHHHHHcCCccHHHHHhhccCCCC
Confidence            579999999999999999999999999863

This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.

>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID

Probab=82.03  E-value=4  Score=31.48  Aligned_cols=48  Identities=19%  Similarity=0.362  Sum_probs=38.1

Q ss_pred             CchhHhhHHHHHHHHHHcCChHHHHHHHHHhcCccccccHHHHHHHHHHHh
Q 028054          112 PQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVA  162 (214)
Q Consensus       112 s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l~~~~~~~~~~~~~i~~l~~  162 (214)
                      ..+.|=+.++-|++||.+|...+|-.|..++-.-+...+   .++|+++.+
T Consensus        38 ~~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~---~~~i~~L~~   85 (142)
T PF04494_consen   38 SRLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSH---QEDIEKLSS   85 (142)
T ss_dssp             GGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHG---HHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHH---HHHHHHHHh
Confidence            568999999999999999999999999998777666544   455666654

The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 9e-08
 Identities = 39/251 (15%), Positives = 80/251 (31%), Gaps = 80/251 (31%)

Query: 4   FWIVIRQLAEIEA-MAMSKKVITR-----EEWEKKLNDVKIRKEDMNKLVMNFLVTEGYV 57
           FW+ ++     E  + M +K++ +            +++K+R   +   +   L ++ Y 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 58  DA------------AEKFRMESGTEPDIDLAT-----ITDRMAVKKA-------VQCGNV 93
           +                F +         L T     +TD ++                 
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKI-----LLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 94  EDAIE---------KVNDLNPEILDTNPQLFFHLQQQRLI-ELIRNG------------- 130
            D ++         +  DL  E+L TNP     L    +I E IR+G             
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNP---RRLS---IIAESIRDGLATWDNWKHVNCD 353

Query: 131 KVEEALEFAQEELAPRGEENQSFLEEL----------ERTVALLAFEDVSNCPVGDLLDI 180
           K+   +E +   L P   E +   + L             ++L+ F+ + +      + +
Sbjct: 354 KLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV----MVV 407

Query: 181 SQRLKTASEVN 191
             +L   S V 
Sbjct: 408 VNKLHKYSLVE 418

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 29/247 (11%), Positives = 74/247 (29%), Gaps = 51/247 (20%)

Query: 3   LFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEK 62
           LFW ++ +  E+    + + +    ++   L    I+ E         ++T  Y++  ++
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKF---LMS-PIKTEQRQPS----MMTRMYIEQRDR 118

Query: 63  FRMESGTEPDIDLATITDRMAVKKAVQ---------------CGN---VEDAI--EKVND 102
              ++      +++ +   + +++A+                 G      D     KV  
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 103 LNP---------------EILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRG 147
                              +L+   +L + +          +  ++  +   Q EL    
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---- 234

Query: 148 EENQSFLEELERTVALLAFEDVSNCPVGDLLDISQR-LKTASEVNAAILTSQSHEKDFSQ 206
              +  L+       LL   +V N    +  ++S + L T          S +     S 
Sbjct: 235 ---RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 207 SSGQVMF 213
               +  
Sbjct: 292 DHHSMTL 298

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 26/200 (13%), Positives = 71/200 (35%), Gaps = 39/200 (19%)

Query: 19  MSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGY-VDAAEKFRMESGTEPDIDLAT 77
           M K ++++EE    ++ + + K+ ++  +  F        +  +KF +E     +     
Sbjct: 41  MPKSILSKEE----IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKF-- 93

Query: 78  ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLF--FHLQQQRLIELIRNGKVEEA 135
           +   +  ++          IE+ + L       + Q+F  +++ + +    +R      A
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLY-----NDNQVFAKYNVSRLQPYLKLRQ-----A 143

Query: 136 LEFAQEE---------------LAPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLD 179
           L   +                 +A     +     +++  +  L   ++ NC     +L+
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---NLKNCNSPETVLE 200

Query: 180 ISQRLKTASEVNAAILTSQS 199
           + Q+L    + N    +  S
Sbjct: 201 MLQKLLYQIDPNWTSRSDHS 220

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	95.31
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	95.17
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	87.03
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	83.67

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=95.31  E-value=0.02  Score=39.83  Aligned_cols=31  Identities=23%  Similarity=0.567  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHhCCCC
Q 028054           41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEP   71 (214)
Q Consensus        41 ~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~   71 (214)
                      ++|++.|++||..+||.+++.+|.+|+++..
T Consensus        11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~   41 (88)
T 1uuj_A           11 DELNRAIADYLRSNGYEEAYSVFKKEAELDM   41 (88)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCC
Confidence            5689999999999999999999999998763

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=95.17  E-value=0.022  Score=39.77  Aligned_cols=34  Identities=29%  Similarity=0.491  Sum_probs=31.0

Q ss_pred             CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCC
Q 028054           37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE   70 (214)
Q Consensus        37 ~~~~~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~   70 (214)
                      .++.+++|.+|.-||...||..||-+|.+|+++.
T Consensus         2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~   35 (90)
T 2xtc_A            2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS   35 (90)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence            4677888999999999999999999999999875

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=87.03  E-value=1.4  Score=33.54  Aligned_cols=80  Identities=16%  Similarity=0.068  Sum_probs=53.6

Q ss_pred             HHHHHHHhhChhhhh-cCCchhHhhHHHHHHHHHHcCChHHHHHHHHHhcCccccccHHHHHHHHHHHhHhhccCCCCCc
Q 028054           95 DAIEKVNDLNPEILD-TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCP  173 (214)
Q Consensus        95 ~Al~~~~~~~~~L~~-~~s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l~~~~~~~~~~~~~i~~l~~lL~~~~~~~sp  173 (214)
                      .-.+|++.. ++..+ .=+.+.|=+.++-|++||.+|...+|-+|.+++-.-+...+   .++++.+.++..-....+.+
T Consensus        33 ~L~~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~---~~~i~~L~~i~~~~~l~~n~  108 (156)
T 2nxp_A           33 GLKHFIECS-LDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYY---QDDLRVLSSLTKKEHMKGNE  108 (156)
T ss_dssp             HHHHHHHTS-CHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGG---HHHHHHHHTCCSHHHHTTCG
T ss_pred             HHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHH---HHHHHHHhcCCCHHHHhhcH
Confidence            346777764 33322 23678999999999999999999999999998766665433   57777776654433333334


Q ss_pred             hhhhc
Q 028054          174 VGDLL  178 (214)
Q Consensus       174 ~~~l~  178 (214)
                      +...+
T Consensus       109 ~~~~f  113 (156)
T 2nxp_A          109 TMLDF  113 (156)
T ss_dssp             GGGGG
T ss_pred             HHHHH
Confidence            33333

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=83.67  E-value=0.22  Score=42.83  Aligned_cols=54  Identities=17%  Similarity=0.320  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHCCCHHHHHHH
Q 028054           40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK   99 (214)
Q Consensus        40 ~~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Al~~   99 (214)
                      +++++++|++||..+||.+++.+|.+|.+++.....      ......+.++.|+..+..
T Consensus         8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~------~~~~~~~~~~~w~~~~~l   61 (410)
T 1vyh_C            8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEEL------DKKYAGLLEKKWTSVIRL   61 (410)
T ss_dssp             ------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcch------hhhhhchhhhhhhheeeH
Confidence            467899999999999999999999999987532211      123344566777666553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	95.73
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	87.36
d2j4ba1	131	TAF5 subunit of TFIID {Encephalitozoon cuniculi [T	83.05

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.73  E-value=0.0057  Score=39.77  Aligned_cols=31  Identities=23%  Similarity=0.622  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHhCCC
Q 028054           40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTE   70 (214)
Q Consensus        40 ~~~l~~lI~~yL~~~Gy~eta~~f~~E~~~~   70 (214)
                      +++||+.|++||..+||.+++.+|.+|+++.
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~   37 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELD   37 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCC
Confidence            3678999999999999999999999999875

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.36  E-value=0.62  Score=33.47  Aligned_cols=68  Identities=19%  Similarity=0.101  Sum_probs=48.8

Q ss_pred             HHHHhhChhhhhcCCchhHhhHHHHHHHHHHcCChHHHHHHHHHhcCccccccHHHHHHHHHHHhHhhccC
Q 028054           98 EKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFED  168 (214)
Q Consensus        98 ~~~~~~~~~L~~~~s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l~~~~~~~~~~~~~i~~l~~lL~~~~  168 (214)
                      .|+...-......=..+.|=+...-|++||.+|+...|..|.+++-.-+...+   .+.|+++.++..-.+
T Consensus        29 ~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~---~~~I~~L~~i~~~~~   96 (149)
T d2nxpa1          29 HFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYY---QDDLRVLSSLTKKEH   96 (149)
T ss_dssp             HHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGG---HHHHHHHHTCCSHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHH---HHHHHHHHcCCCHHH
Confidence            46665433322233678999999999999999999999999998765555433   677777776544433

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

Probab=83.05  E-value=0.99  Score=31.60  Aligned_cols=63  Identities=19%  Similarity=0.177  Sum_probs=44.0

Q ss_pred             HHHHHhhChhhhhcCCchhHhhHHHHHHHHHHcCChHHHHHHHHHhcCccccccHHHHHHHHHHHhH
Q 028054           97 IEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVAL  163 (214)
Q Consensus        97 l~~~~~~~~~L~~~~s~L~F~L~~q~fIeli~~~~~~~Ai~yar~~l~~~~~~~~~~~~~i~~l~~l  163 (214)
                      -.|++..-..-...=..+.|=+...-|++||.+|...+|..|.+++-..+.    .+.++++++.++
T Consensus        10 r~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~----~~~~~i~~L~~i   72 (131)
T d2j4ba1          10 KTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY----NKSEEIKQFESI   72 (131)
T ss_dssp             HHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC------CHHHHHHHTTC
T ss_pred             HHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH----HHHHHHHHHHcc
Confidence            367765433222233678999999999999999999999999998654442    235667776663