Citrus Sinensis ID: 028084

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MRTTFPEYVVALATIVGSVLFSIFGgvgiaclplglifsfirrpkaviTRSQYIKEATELGKKARELKKAADTLHqeersgskgrkwrkNVKSVEKELLQLEEDVKLLEEMypqgekaetsWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLinpplhpflnEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK
Flexible Loop (DISEMBL)
MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAAdtlhqeersgskgrkwrknvKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK
Low Complexity Region (SEG)
MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTaafaffcfylllaVIAGAMMLGLRLVFITIHPMK
Disordered region (IsUnstruct)
****FPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIK*************************************************VKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIH***
Disordered Region (DISOPRED)
*RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITR*QYIK***ELGK*********************************KELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK
Disordered Region (DISEMBL)
MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELK***********************KSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK
Disordered Region (DISPRO)
*RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHP**
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKExxxxxxxxxxxxxxxxxxxxxERSGSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q9M028	509	LIMR family protein At5g0	yes	no	1.0	0.420	0.906	1e-112
Q9SR93	509	LIMR family protein At3g0	yes	no	1.0	0.420	0.901	1e-111
Q658I5	510	LIMR family protein Os06g	yes	no	1.0	0.419	0.827	1e-103
D8TFA8	410	LIMR family protein SELMO	N/A	no	0.943	0.492	0.594	5e-69
D8S067	264	LIMR family protein SELMO	N/A	no	0.845	0.685	0.490	6e-56
D8TFB0	321	LIMR family protein SELMO	N/A	no	0.841	0.560	0.509	2e-52
D8S069	187	CASP-like protein SELMODR	N/A	no	0.845	0.967	0.522	6e-52
D8S072	166	CASP-like protein SELMODR	N/A	no	0.771	0.993	0.513	1e-48
D8RQM9	185	CASP-like protein SELMODR	N/A	no	0.738	0.854	0.513	3e-46
Q54QP7	507	LIMR family protein DDB_G	yes	no	0.953	0.402	0.342	1e-30

>sp|Q9M028|LMBD2_ARATH LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1

 Score =  404 bits (1037), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/214 (90%), Positives = 207/214 (96%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKAR+LKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARDLKKAADALHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK VLGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
           AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMK
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMK 413

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR93|LMBD1_ARATH LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930 PE=2 SV=2

 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/214 (90%), Positives = 207/214 (96%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARELKKAADGLHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK +LGI+G IVS+AWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
           AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMK
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMK 413

Arabidopsis thaliana (taxid: 3702)

>sp|Q658I5|LMBD1_ORYSJ LIMR family protein Os06g0128200 OS=Oryza sativa subsp. japonica GN=Os06g0128200 PE=2 SV=1

 Score =  372 bits (956), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/214 (82%), Positives = 199/214 (92%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MR TFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSF+RRPKAVITRSQYIKEATEL
Sbjct: 201 MRATFPEYVVALATIVGSVLFTIFGGVGIACLPLGLIFSFVRRPKAVITRSQYIKEATEL 260

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAA+ LHQEE+SG KGRKWRKNVK++ KEL+ LE+D+K LEEMYPQGE+AE 
Sbjct: 261 GKKARELKKAAEALHQEEKSGKKGRKWRKNVKALGKELVLLEDDMKALEEMYPQGEQAEA 320

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WALTVLGY+ KL+ G +G I+S+AWVAHIVIYLLI+PPL  FLNE+F+KLD +WGLLGT
Sbjct: 321 TWALTVLGYIGKLLFGAVGLIISIAWVAHIVIYLLIDPPLSSFLNEIFVKLDGVWGLLGT 380

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
           AAFAFFCFYLL+AVIAG MMLGL+LVFITIHPMK
Sbjct: 381 AAFAFFCFYLLIAVIAGEMMLGLKLVFITIHPMK 414

Oryza sativa subsp. japonica (taxid: 39947)

>sp|D8TFA8|LMBD3_SELML LIMR family protein SELMODRAFT_432208 OS=Selaginella moellendorffii GN=SELMODRAFT_432208 PE=3 SV=2

 Score =  260 bits (664), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 123/207 (59%), Positives = 163/207 (78%), Gaps = 5/207 (2%)

Query: 8   YVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKAREL 67
           YV+ L TI+GS+LF +FGGVG+A LPL LIF+F  RPK VITR+QY+KEAT+L K++ EL
Sbjct: 168 YVITLNTIIGSILFMMFGGVGMATLPLSLIFAFKNRPKCVITRAQYVKEATDLAKRSNEL 227

Query: 68  KKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVL 127
           K A   L +EER G KGR +RKNVK V++EL+ LE+DV+ L E +PQGEK      LTVL
Sbjct: 228 KTATLGLQREERGGKKGRMFRKNVKKVQQELVFLEDDVEALNEAFPQGEK-----TLTVL 282

Query: 128 GYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFC 187
            YLAKLV GI+G  +S+ W+ HI++++L+NPP  PFLN+VFI+LD + GLLGT  FA FC
Sbjct: 283 FYLAKLVFGIVGLALSIIWLLHIIVFMLVNPPAFPFLNQVFIQLDTVGGLLGTTTFAIFC 342

Query: 188 FYLLLAVIAGAMMLGLRLVFITIHPMK 214
           +YL+++VI+G M LG+RL+F++IHPMK
Sbjct: 343 YYLVMSVISGKMHLGMRLLFLSIHPMK 369

Selaginella moellendorffii (taxid: 88036)

>sp|D8S067|LMBD2_SELML LIMR family protein SELMODRAFT_416716 OS=Selaginella moellendorffii GN=SELMODRAFT_416716 PE=3 SV=1

 Score =  217 bits (552), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 107/218 (49%), Positives = 145/218 (66%), Gaps = 37/218 (16%)

Query: 2   RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIK-----E 56
           R  FP Y++AL+TI+ S+LF++FGGVG+A LPL LIF+F  RPK V TR+QY+K     E
Sbjct: 79  RAPFPTYMIALSTIIRSILFTMFGGVGMATLPLSLIFAFKNRPKCVTTRAQYVKVMALQE 138

Query: 57  ATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116
           AT+L K++ ELK A   L +EER G KGRK+RKNVK V++                    
Sbjct: 139 ATDLAKRSNELKTATLGLQREERGGKKGRKFRKNVKKVQQ-------------------- 178

Query: 117 KAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWG 176
            A+TSWALTV               +S+ W+ HI++++L+NPP  PFLN+VFI+LD  WG
Sbjct: 179 -ADTSWALTVRN-----------LALSIIWLLHIIVFMLVNPPAFPFLNQVFIQLDSAWG 226

Query: 177 LLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
           LLGT  FA FC+YL+++VI+G M LG+RL+ ++IHPMK
Sbjct: 227 LLGTTTFAIFCYYLVMSVISGEMHLGMRLLLLSIHPMK 264

Selaginella moellendorffii (taxid: 88036)

>sp|D8TFB0|LMBD1_SELML LIMR family protein SELMODRAFT_432210 OS=Selaginella moellendorffii GN=SELMODRAFT_432210 PE=3 SV=1

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/210 (50%), Positives = 141/210 (67%), Gaps = 30/210 (14%)

Query: 5   FPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKA 64
           FP YV+AL     S+LF++FGGV IA LPL LIF+F  RPK V+     ++EAT+L K +
Sbjct: 142 FPTYVIAL-----SILFTMFGGVRIATLPLSLIFAFKNRPKCVMA----LQEATDLAKSS 192

Query: 65  RELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWAL 124
             LKK    L +EER G KGRK RKNVK V++E                     +TSWAL
Sbjct: 193 NVLKKVTLGLQREERGGKKGRKLRKNVKKVQQE---------------------DTSWAL 231

Query: 125 TVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFA 184
           TVL YLAKLV GILG  +S+ W+ HI++++L+NPP  PFLN+VFI+LD    LLGT  FA
Sbjct: 232 TVLFYLAKLVFGILGLALSIIWLLHILVFMLVNPPAFPFLNQVFIQLDSAGDLLGTTPFA 291

Query: 185 FFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
            FC+Y +++VI+G M LG++L+F++IHPMK
Sbjct: 292 IFCYYFVMSVISGEMHLGMKLLFLSIHPMK 321

Selaginella moellendorffii (taxid: 88036)

>sp|D8S069|CSPLI_SELML CASP-like protein SELMODRAFT_416718 OS=Selaginella moellendorffii GN=SELMODRAFT_416718 PE=3 SV=1

 Score =  203 bits (517), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 103/197 (52%), Positives = 136/197 (69%), Gaps = 16/197 (8%)

Query: 23  IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIK-----EATELGKKARELKKAADTLHQE 77
           +FGGVG+A LPL LIF+F  RPK VITR+QY+K     E T+L K++ EL         E
Sbjct: 2   MFGGVGMATLPLSLIFAFKNRPKCVITRAQYVKVMAWQEVTDLAKRSNELGSPTRRKRLE 61

Query: 78  ERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGI 137
           ER+    +         ++EL+ LE+DV+ L E +PQGEKA+TSWALTVL YLAKLV GI
Sbjct: 62  ERTKVSEKC---EESPADQELVFLEDDVQALNEAFPQGEKADTSWALTVLFYLAKLVFGI 118

Query: 138 LGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAG 197
           LG  +SV W+ HI++++L+NPP  PFLN+VFI+LD  WGLLGT AFA FC+YL+++VI+G
Sbjct: 119 LGLALSVIWLLHIIVFMLVNPPAFPFLNQVFIQLDSAWGLLGTTAFAIFCYYLVMSVISG 178

Query: 198 AMMLGLRLVFITIHPMK 214
            M         +I+PMK
Sbjct: 179 EMH--------SIYPMK 187

Selaginella moellendorffii (taxid: 88036)

>sp|D8S072|CSPLK_SELML CASP-like protein SELMODRAFT_416721 OS=Selaginella moellendorffii GN=SELMODRAFT_416721 PE=3 SV=1

 Score =  192 bits (488), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 130/187 (69%), Gaps = 22/187 (11%)

Query: 29  IACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWR 88
           +A LP+ L+F+F  RPK VITR+QY+KEAT+L K++ EL             GS  R+  
Sbjct: 1   MATLPVSLVFAFKNRPKCVITRAQYVKEATDLAKRSNEL-------------GSPTRRKD 47

Query: 89  KNVKSVE-KELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWV 147
           ++   +  +EL+ LE+DV+ L E +PQGEKA+TSWA+TVL  LAKLV GILG  +SV W 
Sbjct: 48  ESFGKISIQELVFLEDDVQALNEAFPQGEKADTSWAVTVLFSLAKLVFGILGLALSVIWP 107

Query: 148 AHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVF 207
            HI++++L+NPP  PFLN+VFI+LD  WGLLGT AFA FC+YL+++VI+G M        
Sbjct: 108 LHIIVFMLVNPPAFPFLNQVFIQLDSAWGLLGTTAFAIFCYYLVMSVISGEMH------- 160

Query: 208 ITIHPMK 214
            +IHPMK
Sbjct: 161 -SIHPMK 166

Selaginella moellendorffii (taxid: 88036)

>sp|D8RQM9|CSPLJ_SELML CASP-like protein SELMODRAFT_413556 OS=Selaginella moellendorffii GN=SELMODRAFT_413556 PE=3 SV=1

 Score =  184 bits (468), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 98/191 (51%), Positives = 128/191 (67%), Gaps = 33/191 (17%)

Query: 29  IACLPLGLIFSFIRRPKAVITRSQYIK-----EATELGKKARELKKAADTLHQEERSGSK 83
           +A LPL LIF+F  RPK VITR+QY+K     E T   K++ EL             GS 
Sbjct: 1   MATLPLSLIFAFKNRPKCVITRAQYVKVMAWQEVT--AKRSNEL-------------GSP 45

Query: 84  GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVS 143
            R+     KS  +EL+ LE+DV+ L E +PQGEKA+TSWA+TVL YLAKLV GILG  +S
Sbjct: 46  TRR-----KSSIQELVFLEDDVQALNEAFPQGEKADTSWAVTVLFYLAKLVFGILGLALS 100

Query: 144 VAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGL 203
           + W+ HI++++L+NPP  PFLN+VFI+LD  WGLLGT AFA FC+YL+++VI+G M    
Sbjct: 101 IIWLLHIIVFMLVNPPAFPFLNQVFIQLDSAWGLLGTTAFAIFCYYLIMSVISGEMH--- 157

Query: 204 RLVFITIHPMK 214
                +IHPMK
Sbjct: 158 -----SIHPMK 163

Selaginella moellendorffii (taxid: 88036)

>sp|Q54QP7|Y3707_DICDI LIMR family protein DDB_G0283707 OS=Dictyostelium discoideum GN=DDB_G0283707 PE=3 SV=2

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 114/216 (52%), Gaps = 12/216 (5%)

Query: 2   RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELG 61
           R +   +++ +    G +LF IFGG+G+  LP  +I  F  RP+  I   +Y++   ++G
Sbjct: 212 RVSIALFIITMVAFFGWLLFIIFGGIGLVALPFDMIGDFKNRPQR-IPYDKYLERKKKIG 270

Query: 62  KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYP-QGEKAET 120
           ++A EL +   T+      G   ++ RKN     + +  LEED + L+  Y  QG K   
Sbjct: 271 ERATELVEIGKTIQSRTSGGIMSKRDRKNYNRFRQAIFLLEEDYERLKISYKRQGGK--- 327

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLG 179
                V+ Y A+   G +   VS+ W+ HI+IY++  P P HPFLN + I L++ WG LG
Sbjct: 328 -----VIFYYAQFFGGFVALGVSLGWLLHIIIYMITAPEPFHPFLNSLVIALNNAWGFLG 382

Query: 180 TAAFAFFCFYLLLAVIAGAMMLGLRLVFI-TIHPMK 214
              +    FYLL  V+ G    GLRL F+  IHPM+
Sbjct: 383 VIVYGLLSFYLLFCVVKGNFKFGLRLFFLFPIHPMR 418

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
255574363	509	conserved hypothetical protein [Ricinus	1.0	0.420	0.957	1e-114
449461773	509	PREDICTED: LIMR family protein At3g08930	1.0	0.420	0.953	1e-114
225440692	509	PREDICTED: LIMR family protein At5g01460	1.0	0.420	0.948	1e-114
224087748	509	predicted protein [Populus trichocarpa]	1.0	0.420	0.943	1e-113
224140417	509	predicted protein [Populus trichocarpa]	1.0	0.420	0.943	1e-113
356521010	509	PREDICTED: LIMR family protein At5g01460	1.0	0.420	0.934	1e-111
356568088	509	PREDICTED: LIMR family protein At5g01460	1.0	0.420	0.934	1e-111
356560938	400	PREDICTED: LOW QUALITY PROTEIN: LIMR fam	1.0	0.535	0.929	1e-110
15240980	509	LMBR1-like membrane protein [Arabidopsis	1.0	0.420	0.906	1e-110
297829416	509	hypothetical protein ARALYDRAFT_478196 [	1.0	0.420	0.906	1e-110

>gi|255574363|ref|XP_002528095.1| conserved hypothetical protein [Ricinus communis] gi|223532484|gb|EEF34274.1| conserved hypothetical protein [Ricinus communis]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/214 (95%), Positives = 209/214 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSGSKGRKWRKNVK+VEKEL QLEEDVKLLEEMYPQGEKAET
Sbjct: 260 GKKARELKKAADALHQEERSGSKGRKWRKNVKAVEKELFQLEEDVKLLEEMYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           SWALTVLGYLAKLVLGILG IVSVAWVAHIVIYLLI+PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 SWALTVLGYLAKLVLGILGLIVSVAWVAHIVIYLLISPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
            AFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK
Sbjct: 380 VAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 413

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461773|ref|XP_004148616.1| PREDICTED: LIMR family protein At3g08930-like [Cucumis sativus] gi|449522716|ref|XP_004168372.1| PREDICTED: LIMR family protein At3g08930-like [Cucumis sativus]

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/214 (95%), Positives = 210/214 (98%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSGSKGRKWRKNVK+VEKELLQLEEDVKLLEEMYPQGEKAET
Sbjct: 260 GKKARELKKAADGLHQEERSGSKGRKWRKNVKAVEKELLQLEEDVKLLEEMYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WALTVLGYLAKLVLG+LG IVSVAWV HIVIYLLI+PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWALTVLGYLAKLVLGVLGLIVSVAWVVHIVIYLLIDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
           AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 413

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440692|ref|XP_002280330.1| PREDICTED: LIMR family protein At5g01460 [Vitis vinifera] gi|297740207|emb|CBI30389.3| unnamed protein product [Vitis vinifera]

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/214 (94%), Positives = 210/214 (98%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKAR+LKKAAD LHQEERSGSKGRKWRKNVK+VEKELLQLE+DVK LEEMYPQGEKAET
Sbjct: 260 GKKARDLKKAADALHQEERSGSKGRKWRKNVKAVEKELLQLEDDVKALEEMYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WALTVLGYLAKLVLGILG IVSVAW+AHIVIYLLI+PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 TWALTVLGYLAKLVLGILGLIVSVAWIAHIVIYLLIDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
           AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087748|ref|XP_002308217.1| predicted protein [Populus trichocarpa] gi|222854193|gb|EEE91740.1| predicted protein [Populus trichocarpa]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/214 (94%), Positives = 208/214 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MR TFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATE 
Sbjct: 200 MRATFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEF 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET
Sbjct: 260 GKKARELKKAADALHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WALTVLGYLAKLVLGILG IVSVAWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWALTVLGYLAKLVLGILGLIVSVAWVAHIIIYLLVDPPLSPFLNEVFIKLDDIWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
            AFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK
Sbjct: 380 VAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 413

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140417|ref|XP_002323579.1| predicted protein [Populus trichocarpa] gi|222868209|gb|EEF05340.1| predicted protein [Populus trichocarpa]

 Score =  411 bits (1056), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/214 (94%), Positives = 209/214 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MR TFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRATFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDVKLLEE+YPQGEKAET
Sbjct: 260 GKKARELKKAADVLHQEERSGNKGRKWRKNVKAVEKELLQLEEDVKLLEEVYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           SWALTVLGYLAKLVLGILG IVSVAWVAHI+IYLLI+PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 SWALTVLGYLAKLVLGILGLIVSVAWVAHIIIYLLIDPPLSPFLNEVFIKLDDIWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
            AFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK
Sbjct: 380 VAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 413

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521010|ref|XP_003529151.1| PREDICTED: LIMR family protein At5g01460-like [Glycine max]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/214 (93%), Positives = 207/214 (96%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAA+ LHQEERSGSKGRK+RKNVK VEKEL QLEEDVKLLEEMYPQGEKAET
Sbjct: 260 GKKARELKKAAEALHQEERSGSKGRKFRKNVKEVEKELFQLEEDVKLLEEMYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WALTVLGYLAK VLGILG IVSVAWV HI+IYLLI+PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 TWALTVLGYLAKFVLGILGLIVSVAWVTHIIIYLLIDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
           AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 413

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568088|ref|XP_003552245.1| PREDICTED: LIMR family protein At5g01460-like [Glycine max]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/214 (93%), Positives = 208/214 (97%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAA+ LHQEERSGSKGRK+RKNVK VEKEL QLEEDVKLLEE+YPQGEKAET
Sbjct: 260 GKKARELKKAAEALHQEERSGSKGRKFRKNVKEVEKELFQLEEDVKLLEEVYPQGEKAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WALTVLGYLAK VLGILG IVSVAWVAHI+IYLLI+PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 TWALTVLGYLAKFVLGILGLIVSVAWVAHIIIYLLIDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
           AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 413

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560938|ref|XP_003548743.1| PREDICTED: LOW QUALITY PROTEIN: LIMR family protein At5g01460-like [Glycine max]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/214 (92%), Positives = 207/214 (96%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL
Sbjct: 91  MRTTFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 150

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAA+ LHQEER+GSKGRK+RKNVK VEKEL QLEEDVKLLEEMYPQGEKAET
Sbjct: 151 GKKARELKKAAEALHQEERTGSKGRKFRKNVKGVEKELFQLEEDVKLLEEMYPQGEKAET 210

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WALTVLGYLAK VLGILG IVSVAWV HI+IYLLI+PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 211 TWALTVLGYLAKYVLGILGLIVSVAWVTHIIIYLLIDPPLSPFLNEVFIKLDDVWGLLGT 270

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
           AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK
Sbjct: 271 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240980|ref|NP_195766.1| LMBR1-like membrane protein [Arabidopsis thaliana] gi|75181394|sp|Q9M028.1|LMBD2_ARATH RecName: Full=LIMR family protein At5g01460 gi|7320724|emb|CAB81929.1| putative protein [Arabidopsis thaliana] gi|18176296|gb|AAL60018.1| unknown protein [Arabidopsis thaliana] gi|20465353|gb|AAM20080.1| unknown protein [Arabidopsis thaliana] gi|332002964|gb|AED90347.1| LMBR1-like membrane protein [Arabidopsis thaliana]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/214 (90%), Positives = 207/214 (96%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKAR+LKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARDLKKAADALHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK VLGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
           AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMK
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMK 413

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829416|ref|XP_002882590.1| hypothetical protein ARALYDRAFT_478196 [Arabidopsis lyrata subsp. lyrata] gi|297328430|gb|EFH58849.1| hypothetical protein ARALYDRAFT_478196 [Arabidopsis lyrata subsp. lyrata]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/214 (90%), Positives = 207/214 (96%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
           MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct: 200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query: 61  GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
           GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct: 260 GKKARELKKAADGLHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query: 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
           +WA TVLGYLAK +LGILG IVS+AWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct: 320 AWAFTVLGYLAKFILGILGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query: 181 AAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMK 214
           AAFAFFCFYLLLAVIAGAMMLGL+LVFITIHPMK
Sbjct: 380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMK 413

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2179197	509	AT5G01460 [Arabidopsis thalian	1.0	0.420	0.845	3.4e-93
TAIR|locus:2097618	509	AT3G08930 [Arabidopsis thalian	1.0	0.420	0.841	7e-93
DICTYBASE|DDB_G0283707	507	DDB_G0283707 "LMBR1-like conse	0.953	0.402	0.324	1.7e-26
DICTYBASE|DDB_G0293610	507	DDB_G0293610 "LMBR1-like conse	0.953	0.402	0.319	2.8e-26

TAIR|locus:2179197 AT5G01460 [Arabidopsis thaliana (taxid:3702)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 181/214 (84%), Positives = 194/214 (90%)

Query:     1 MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
             MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct:   200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query:    61 GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
             GKKAR+LKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct:   260 GKKARDLKKAADALHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query:   121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
             +WA TVLGYLAK VLGILG IVSVAW+AHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct:   320 AWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query:   181 XXXXXXXXXXXXXVIAGAMMLGLRLVFITIHPMK 214
                          VIAGAMMLGL+LVFITIHPMK
Sbjct:   380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMK 413

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2097618 AT3G08930 [Arabidopsis thaliana (taxid:3702)]

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 180/214 (84%), Positives = 194/214 (90%)

Query:     1 MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATEL 60
             MRTTFPEYVVALATIVGSVLF+IFGGVGIACLPLGLI +FIRRPKAVITRSQYIKEATEL
Sbjct:   200 MRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFIRRPKAVITRSQYIKEATEL 259

Query:    61 GKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAET 120
             GKKARELKKAAD LHQEERSG+KGRKWRKNVK+VEKELLQLEEDV LLEEMYPQGE+AET
Sbjct:   260 GKKARELKKAADGLHQEERSGAKGRKWRKNVKAVEKELLQLEEDVNLLEEMYPQGEQAET 319

Query:   121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGT 180
             +WA TVLGYLAK +LGI+G IVS+AWVAHI+IYLL++PPL PFLNEVFIKLDD+WGLLGT
Sbjct:   320 AWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPLSPFLNEVFIKLDDVWGLLGT 379

Query:   181 XXXXXXXXXXXXXVIAGAMMLGLRLVFITIHPMK 214
                          VIAGAMMLGL+LVFITIHPMK
Sbjct:   380 AAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMK 413

GO:0005576 "extracellular region" evidence=ISM

GO:0009506 "plasmodesma" evidence=IDA

GO:0007033 "vacuole organization" evidence=RCA

DICTYBASE|DDB_G0283707 DDB_G0283707 "LMBR1-like conserved region-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 303 (111.7 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 70/216 (32%), Positives = 109/216 (50%)

Query:     2 RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELG 61
             R +   +++ +    G +LF IFGG+G+  LP  +I  F  RP+  I   +Y++   ++G
Sbjct:   212 RVSIALFIITMVAFFGWLLFIIFGGIGLVALPFDMIGDFKNRPQR-IPYDKYLERKKKIG 270

Query:    62 KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYP-QGEKAET 120
             ++A EL +   T+      G   ++ RKN     + +  LEED + L+  Y  QG K   
Sbjct:   271 ERATELVEIGKTIQSRTSGGIMSKRDRKNYNRFRQAIFLLEEDYERLKISYKRQGGK--- 327

Query:   121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLG 179
                  V+ Y A+   G +   VS+ W+ HI+IY++  P P HPFLN + I L++ WG LG
Sbjct:   328 -----VIFYYAQFFGGFVALGVSLGWLLHIIIYMITAPEPFHPFLNSLVIALNNAWGFLG 382

Query:   180 TXXXXXXXXXXXXXVIAGAMMLGLRLVFI-TIHPMK 214
                           V+ G    GLRL F+  IHPM+
Sbjct:   383 VIVYGLLSFYLLFCVVKGNFKFGLRLFFLFPIHPMR 418

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

DICTYBASE|DDB_G0293610 DDB_G0293610 "LMBR1-like conserved region-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 301 (111.0 bits), Expect = 2.8e-26, P = 2.8e-26
 Identities = 69/216 (31%), Positives = 108/216 (50%)

Query:     2 RTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELG 61
             R +   +++ +    G +LF IFGG+G+  LP  +I  F  RP+  I   +Y++   ++G
Sbjct:   212 RVSIALFIITMVAFFGWLLFIIFGGIGLVALPFDMITDFKNRPQR-IPYDKYLERKKKIG 270

Query:    62 KKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYP-QGEKAET 120
             ++A EL     T+      G   ++ R+N     + +  LEED + L+  Y  QG K   
Sbjct:   271 ERATELVDVGKTIQSRTTGGIMSKRDRRNYNRFRQAIFLLEEDYERLKISYKRQGGK--- 327

Query:   121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINP-PLHPFLNEVFIKLDDLWGLLG 179
                  V+ Y A+   G +   VS+ W+ HI+IY++  P P HPFLN + I L++ WG LG
Sbjct:   328 -----VILYYAQFFGGFIALGVSLGWLLHIIIYMITAPEPFHPFLNSLVISLNNAWGFLG 382

Query:   180 TXXXXXXXXXXXXXVIAGAMMLGLRLVFI-TIHPMK 214
                           V+ G    GLRL F+  IHPM+
Sbjct:   383 VIVYGLLSFYLLFCVVKGNFKFGLRLFFLFPIHPMR 418


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.141   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      214       201   0.00089  111 3  11 22  0.43    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  159 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.77u 0.08s 24.85t   Elapsed:  00:00:02
  Total cpu time:  24.77u 0.08s 24.85t   Elapsed:  00:00:02
  Start:  Mon May 20 14:57:14 2013   End:  Mon May 20 14:57:16 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M028	LMBD2_ARATH	No assigned EC number	0.9065	1.0	0.4204	yes	no
Q9SR93	LMBD1_ARATH	No assigned EC number	0.9018	1.0	0.4204	yes	no
Q658I5	LMBD1_ORYSJ	No assigned EC number	0.8271	1.0	0.4196	yes	no
D8S069	CSPLI_SELML	No assigned EC number	0.5228	0.8457	0.9679	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021508001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (509 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
pfam04791	419	pfam04791, LMBR1, LMBR1-like membrane protein	1e-27
COG1340	294	COG1340, COG1340, Uncharacterized archaeal coiled-	0.002

>gnl|CDD|218267 pfam04791, LMBR1, LMBR1-like membrane protein

 Score =  107 bits (270), Expect = 1e-27
 Identities = 45/242 (18%), Positives = 68/242 (28%), Gaps = 78/242 (32%)

Query: 1   MRTTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIR------------------ 42
           +   F  YV + ++  G +L  I  G G+  LP  L    +R                  
Sbjct: 153 LWENFLPYVYSCSSFWGLLLLLILTGYGLVRLPSSLWKLLVRYFRAAKLEREKVEAESKV 212

Query: 43  ----------RPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVK 92
                              Q  K ATELGK  REL  +A                     
Sbjct: 213 DDILESVSLLPRLLEDVNEQRSKSATELGKLTRELNLSAICRSL---------------- 256

Query: 93  SVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVI 152
                                           T+L      +LG++   +S+  V   + 
Sbjct: 257 -------------------------VYPLAMYTLLVLTFCSILGVVTNTLSLLVVESELP 291

Query: 153 YLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHP 212
           +   +     FLN + I     +GL G A      FYL+ +   G   L     F+  + 
Sbjct: 292 FFTRD-----FLNVIGIASFSKFGLFGAAVEFLLIFYLMYSSYVGFYSLP----FLRYYR 342

Query: 213 MK 214
            K
Sbjct: 343 PK 344

Members of this family are integral membrane proteins that are around 500 residues in length. LMBR1 is not involved in preaxial polydactyly, as originally thought. Vertebrate members of this family may play a role in limb development. A member of this family has been shown to be a lipocalin membrane receptor. Length = 419

>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein [Function unknown]

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 51  SQYIKEATELGKKARELKKAADTLHQE-ERSGSKGRKWRKNVKSVEKELLQLEEDVKLLE 109
            +Y +E  +L ++A EL+K AD LH+E      K  +  +  ++++ EL +LE+ +K L 
Sbjct: 189 QEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALR 248

Query: 110 EMYPQGEKAE 119
                 ++ E
Sbjct: 249 AKEKAAKRRE 258

Length = 294

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
PF04791	471	LMBR1: LMBR1-like membrane protein; InterPro: IPR0	99.86
KOG2296	673	consensus Integral membrane protein [General funct	97.1
KOG3722	538	consensus Lipocalin-interacting membrane receptor	96.42
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.6
PF04420	161	CHD5: CHD5-like protein; InterPro: IPR007514 Membe	93.16
COG1422	201	Predicted membrane protein [Function unknown]	91.92
PF12537	72	DUF3735: Protein of unknown function (DUF3735); In	89.52
KOG2417	462	consensus Predicted G-protein coupled receptor [Si	89.03
PF00664	275	ABC_membrane: ABC transporter transmembrane region	87.93
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	87.26
PF06667	75	PspB: Phage shock protein B; InterPro: IPR009554 T	86.8
PRK10884	206	SH3 domain-containing protein; Provisional	85.48
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	85.32
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	84.82
PF01277	118	Oleosin: Oleosin; InterPro: IPR000136 Oleosins []	84.29
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	83.73
PRK10884	206	SH3 domain-containing protein; Provisional	82.98
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	82.36
KOG1962	216	consensus B-cell receptor-associated protein and r	81.83
TIGR02976	75	phageshock_pspB phage shock protein B. This model	80.65
PF07586	302	HXXSHH: Protein of unknown function (DUF1552); Int	80.27

>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor

Probab=99.86  E-value=7.4e-21  Score=177.82  Aligned_cols=203  Identities=25%  Similarity=0.404  Sum_probs=130.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHH------------
Q 028084            3 TTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKA------------   70 (214)
Q Consensus         3 vsf~~f~i~~l~~iG~~lfi~y~gvGlaaLPi~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~------------   70 (214)
                      .++..|++|+.++.|++++++|+|+||+++|.|+++.+.+..+..-..++..+.+.++++..+++.+.            
T Consensus       155 ~~~~~~~ial~~~~Gl~l~i~~~g~Glv~iP~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  234 (471)
T PF04791_consen  155 SSLLPFLIALSNFWGLFLFIILLGYGLVAIPRDLWRSSNSYFRAAKLEDEAAEAKEKLDDIIEKLRRLRRILRDVEELRS  234 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhccccchhhhhcchhHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Confidence            46789999999999999999999999999999999999871111011111122222222222222211            


Q ss_pred             ---------HHHHHhhh-------ccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHhcccCccc------------chhh
Q 028084           71 ---------ADTLHQEE-------RSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKA------------ETSW  122 (214)
Q Consensus        71 ---------~~~l~~~~-------~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~~~~~~~~------------~~~~  122 (214)
                               .+++++..       ++.+.+++.++..+..++.+..++++.+.+++.+++..+.            ...|
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  314 (471)
T PF04791_consen  235 ELDTILNELPKEIQELIESSNQEERSTNLGRSWRKILDSENKLLLLLKRDLKSLQRLYRREEQWKTLVLSRFFRNLRFQW  314 (471)
T ss_pred             HHHHHHHhhHHHHHHHHhccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHH
Confidence                     11111100       0011112222222333333333333333333332221111            1123


Q ss_pred             hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHh
Q 028084          123 AL-TVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMML  201 (214)
Q Consensus       123 ~~-~~l~~~~kLl~Gii~lllSl~w~i~iil~~i~k~~~~~fLN~~f~~l~~~fpll~~i~~~~~~~Yll~~s~~G~~~~  201 (214)
                      .| ..+.++++.++|+++.++|++|+.|-+.....+     ++|.+++..++.++.++.++.+++++|+.+||.+|++++
T Consensus       315 ~~~~~l~~~~~~il~Vi~~ilSlli~~sEl~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~l~Ym~~ct~~glf~~  389 (471)
T PF04791_consen  315 IWYCYLRPYVYKILAVIFAILSLLIVWSELTFFFRS-----FLFSIFISSDSKFGFLGQLLSFLFLFYMCFCTYYGLFKL  389 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence            34 556677999999999999999999999776655     899999999999888899999999999999999999999


Q ss_pred             hhhhhheecccCC
Q 028084          202 GLRLVFITIHPMK  214 (214)
Q Consensus       202 GiRf~~i~i~pmk  214 (214)
                      |+    +++|||+
T Consensus       390 ~~----f~~y~l~  398 (471)
T PF04791_consen  390 KI----FRFYPLV  398 (471)
T ss_pred             hh----heecccc
Confidence            97    8888875

LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].

>KOG2296 consensus Integral membrane protein [General function prediction only]

Probab=97.10  E-value=0.066  Score=52.59  Aligned_cols=78  Identities=17%  Similarity=0.094  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q 028084          125 TVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLR  204 (214)
Q Consensus       125 ~~l~~~~kLl~Gii~lllSl~w~i~iil~~i~k~~~~~fLN~~f~~l~~~fpll~~i~~~~~~~Yll~~s~~G~~~~GiR  204 (214)
                      .-+..+++.+++++-.+.|.+++++=.-....++...++.+-+....++..=.  ++.-.++..|++.|+-+-.++++++
T Consensus       357 ~~l~~~f~~~~~i~~~~Ms~~Vl~sE~tf~~~~~~Lsl~a~vi~~~~~~~~~i--~~~af~~l~Y~~~ctY~sl~r~~~~  434 (673)
T KOG2296|consen  357 CILKKPFQMVLAIVMAIMSAAILLSEATFLLSKYDLSLFAIVISSAKSDELTV--QFVAFVPLVYMCYCTYYSLFRIQFL  434 (673)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHhhheeeeccchHHHHHHHHHhcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667899999999999999998888767777877888889888888865443  5566778889999999999999988

>KOG3722 consensus Lipocalin-interacting membrane receptor (LIMR) [Defense mechanisms]

Probab=96.42  E-value=0.061  Score=50.81  Aligned_cols=185  Identities=21%  Similarity=0.347  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccCHH-H-HHH---HHHHHHHHHHHHHHHHHHHHhhhccCC
Q 028084            8 YVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRS-Q-YIK---EATELGKKARELKKAADTLHQEERSGS   82 (214)
Q Consensus         8 f~i~~l~~iG~~lfi~y~gvGlaaLPi~lI~~f~~Rpk~~is~~-~-~~~---~~~~l~~~~~~l~e~~~~l~~~~~~~~   82 (214)
                      |+-+|.+++|..+..+.|-+|++-+ .+.-..+.-||+. .++- | +..   +....+++...-.+.+--+.+..+.|.
T Consensus       198 ~lYSCvSflg~~lllicTp~g~~rm-f~v~~~~lvkp~~-l~d~~e~~~~~~~ee~s~~r~l~~~~~~~~~i~ds~~~~~  275 (538)
T KOG3722|consen  198 YLYSCVSFLGVLLLLICTPYGFARM-FSVAGQLLVKPKL-LEDLTEQVYASGIEEASLERRLLNTDDEEMGINDSGDDGD  275 (538)
T ss_pred             HHHHHHHHHHHHHHHhcChhhHHHH-HHHhhhheechhH-HHHHHHhhhhhhcchHHHHHHHhcccchhcccccccccCC
Confidence            7789999999999999999998765 3445555556764 2211 1 000   111111111111111111111111111


Q ss_pred             cC-----------------hHhHH----------HHHHHHHHHHHHHHHHHHHHHhcccCcccchhhhhhHHHHHHHHHH
Q 028084           83 KG-----------------RKWRK----------NVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVL  135 (214)
Q Consensus        83 ~s-----------------~k~rr----------~l~~l~~~~~~Le~~~~~le~~~~~~~~~~~~~~~~~l~~~~kLl~  135 (214)
                      .+                 +|+.+          .++.+++++++++.+-..+++.  +...   .|- .-+.+|...++
T Consensus       276 l~n~~~l~~~~~~~~~pl~~~~~~~l~~~k~~~~d~~~l~~~~~e~~~qr~~l~~r--rt~S---a~e-RnlvyP~am~l  349 (538)
T KOG3722|consen  276 LGNSTPLKNKKKRRTTPIVRKWDKDVPKKKNPNFDYRELKEYVKELRTQRSSLEKR--RTAS---AWE-RNLVYPLAMLL  349 (538)
T ss_pred             cccccccccccccCCChhHHHHhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHhh--hhhH---HHH-HhhhhHHHHHH
Confidence            11                 11111          3444555555555555555553  1111   121 46777899988


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCChhHHH---HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 028084          136 GILGFIVSVAWVAHIVIYLLINPPLHPFLNEV---FIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMM  200 (214)
Q Consensus       136 Gii~lllSl~w~i~iil~~i~k~~~~~fLN~~---f~~l~~~fpll~~i~~~~~~~Yll~~s~~G~~~  200 (214)
                      =.++.-+|++.++.=++..+.+.-.-|---.-   =+..=+.|.++|..+=.++++|++.+|++|--.
T Consensus       350 LLv~T~~SvLlVa~NtL~LLi~e~AlP~~trg~~ig~~Sls~fG~fGA~lEv~LIfYlmvtSvVGfYS  417 (538)
T KOG3722|consen  350 LLVLTTCSVLLVATNTLELLIGERALPVYTQGFAIGVHSLSKFGLFGACIEVLLIFYLMVTSVVGFYS  417 (538)
T ss_pred             HHHHhhhHHHHHHHhHHHHHhCcccCccccccccccceehhhccchHHHHHHHHHHHHHHHHHhhhhc
Confidence            89999999999999888888774222222111   122224577789999999999999999999543

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=95.60  E-value=0.2  Score=41.51  Aligned_cols=20  Identities=35%  Similarity=0.705  Sum_probs=13.6

Q ss_pred             hhhhhhhHHHHhhcccCCCc
Q 028084           27 VGIACLPLGLIFSFIRRPKA   46 (214)
Q Consensus        27 vGlaaLPi~lI~~f~~Rpk~   46 (214)
                      +|++.++.++..-...+|.+
T Consensus        48 lg~vL~~~g~~~~~~~~~~~   67 (191)
T PF04156_consen   48 LGVVLLSLGLLCLLSKRPVQ   67 (191)
T ss_pred             HHHHHHHHHHHHHHHccccc
Confidence            46666777777666677765

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein

Probab=93.16  E-value=0.27  Score=40.46  Aligned_cols=37  Identities=8%  Similarity=0.091  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-ChhHHHHH
Q 028084          131 AKLVLGILGFIVSVAWVAHIVIYLLINPPLH-PFLNEVFI  169 (214)
Q Consensus       131 ~kLl~Gii~lllSl~w~i~iil~~i~k~~~~-~fLN~~f~  169 (214)
                      ..++.+....++ ..|.=.--++.+++. .+ .|+++++-
T Consensus       104 ~~~~~~~~~~~l-~~~~rk~pV~~lp~~-~~p~p~~~lLS  141 (161)
T PF04420_consen  104 LWVLTTLPFFVL-RFWYRKTPVFYLPKG-WFPWPFEWLLS  141 (161)
T ss_dssp             ----------------------------------------
T ss_pred             HHHHHHHHHhhh-heeecCceEEEECch-hhHHHHHHhee
Confidence            333444333333 334445455566642 33 56666654

The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.

>COG1422 Predicted membrane protein [Function unknown]

Probab=91.92  E-value=7.5  Score=33.46  Aligned_cols=45  Identities=22%  Similarity=0.344  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084           66 ELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM  111 (214)
Q Consensus        66 ~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~  111 (214)
                      ++.++.++.|++.++.++ ++|-.++++++++..+.-+|++++-..
T Consensus        76 ~~qk~m~efq~e~~eA~~-~~d~~~lkkLq~~qmem~~~Q~elmk~  120 (201)
T COG1422          76 ELQKMMKEFQKEFREAQE-SGDMKKLKKLQEKQMEMMDDQRELMKM  120 (201)
T ss_pred             HHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444332222 356779999999999999999888776

>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance

Probab=89.52  E-value=2.8  Score=29.94  Aligned_cols=61  Identities=21%  Similarity=0.338  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccC-HHHHHHHHHHHHHHHHHHHHHHHH
Q 028084            9 VVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVIT-RSQYIKEATELGKKARELKKAADT   73 (214)
Q Consensus         9 ~i~~l~~iG~~lfi~y~gvGlaaLPi~lI~~f~~Rpk~~is-~~~~~~~~~~l~~~~~~l~e~~~~   73 (214)
                      ++.=++.+|..+-.+-.|+|=+..|..-+.-|.+ |   .+ ..+.+....++..-.+.+.++.++
T Consensus         9 ~l~ri~ViGVt~mAiLSG~gaVstpy~~~~~~~~-~---v~~~~~i~~~~~~l~~t~~~l~~Kk~~   70 (72)
T PF12537_consen    9 VLSRIGVIGVTLMAILSGFGAVSTPYYYFSYFRR-P---VSRESDINNAERRLWHTRDMLVEKKKR   70 (72)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHccHHHHHHHHHh-c---CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677899999999999999999999999996655 3   45 444444444444333344444333

It belongs to the Golgi pH regulator (1.A.38 from TC) family

>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]

Probab=89.03  E-value=6.4  Score=37.00  Aligned_cols=94  Identities=19%  Similarity=0.368  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhhc
Q 028084           10 VALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKA----------ADTLHQEER   79 (214)
Q Consensus        10 i~~l~~iG~~lfi~y~gvGlaaLPi~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~----------~~~l~~~~~   79 (214)
                      ++=...+|.-+-++-.|-|-+-.|.+.+.-|.+ |   ++..+..+...++..-.|-.+.+          .+++++++.
T Consensus       149 iSRvgVIGVTlMAvLSGFGAVN~PYsyms~FiR-~---Vee~di~~lErrL~qtmdmiisKKkk~a~~~l~~~~l~~e~~  224 (462)
T KOG2417|consen  149 ISRVGVIGVTLMAVLSGFGAVNAPYSYMSYFIR-P---VEETDIIQLERRLAQTMDMIISKKKKMAMAQLEEKRLQSEKV  224 (462)
T ss_pred             HhhhhhhhhhHHHHHhccCccCCchhhhhhhhc-c---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhc
Confidence            444567888999999999999999999988865 5   66665544333332222222111          122222222


Q ss_pred             cCCcC---------------hHhHHHHHHHHHHHHHHHHHHHH
Q 028084           80 SGSKG---------------RKWRKNVKSVEKELLQLEEDVKL  107 (214)
Q Consensus        80 ~~~~s---------------~k~rr~l~~l~~~~~~Le~~~~~  107 (214)
                      +.+.|               ..-..+++.+++|+..||+=.|.
T Consensus       225 ~k~pSff~r~w~~~~~~~~~~~~~~~i~~lq~EV~~LEeLsrq  267 (462)
T KOG2417|consen  225 QKEPSFFRRFWGMFSSSVQDNTLSSDIKLLQQEVEPLEELSRQ  267 (462)
T ss_pred             ccCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Confidence            22221               11234788999999999987665

>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=87.93  E-value=13  Score=30.06  Aligned_cols=18  Identities=17%  Similarity=0.336  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 028084            8 YVVALATIVGSVLFSIFG   25 (214)
Q Consensus         8 f~i~~l~~iG~~lfi~y~   25 (214)
                      .+.++.++++.+.++++.
T Consensus       122 ~~~~~~~~i~~~~~~~~~  139 (275)
T PF00664_consen  122 IISSIISIIFSLILLFFI  139 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhccccc
Confidence            334444455555444443

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=87.26  E-value=8.7  Score=32.00  Aligned_cols=18  Identities=17%  Similarity=0.342  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 028084            7 EYVVALATIVGSVLFSIF   24 (214)
Q Consensus         7 ~f~i~~l~~iG~~lfi~y   24 (214)
                      .|+.|+..++++++.-++
T Consensus       104 ~YIsGf~LfL~l~I~r~~  121 (192)
T PF05529_consen  104 MYISGFALFLSLVIRRVH  121 (192)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            588888888888877665

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences

Probab=86.80  E-value=5.7  Score=28.99  Aligned_cols=44  Identities=20%  Similarity=0.338  Sum_probs=21.7

Q ss_pred             hhHHHHhhcccCCCc--ccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084           32 LPLGLIFSFIRRPKA--VITRSQYIKEATELGKKARELKKAADTLHQ   76 (214)
Q Consensus        32 LPi~lI~~f~~Rpk~--~is~~~~~~~~~~l~~~~~~l~e~~~~l~~   76 (214)
                      .|+-|+.-|++|.|.  -.|.++ .+.-.++.++++++.|+-+.||+
T Consensus        18 ap~WL~lHY~sk~~~~~gLs~~d-~~~L~~L~~~a~rm~eRI~tLE~   63 (75)
T PF06667_consen   18 APIWLILHYRSKWKSSQGLSEED-EQRLQELYEQAERMEERIETLER   63 (75)
T ss_pred             HHHHHHHHHHHhcccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            488889888775532  022222 11223444444455554444443

The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock

>PRK10884 SH3 domain-containing protein; Provisional

Probab=85.48  E-value=7.8  Score=33.33  Aligned_cols=23  Identities=9%  Similarity=0.245  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 028084           88 RKNVKSVEKELLQLEEDVKLLEE  110 (214)
Q Consensus        88 rr~l~~l~~~~~~Le~~~~~le~  110 (214)
                      +++.++++++...+..+.+.++.
T Consensus       138 ~~~n~~L~~~l~~~~~~~~~l~~  160 (206)
T PRK10884        138 KEENQKLKNQLIVAQKKVDAANL  160 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444433

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=85.32  E-value=14  Score=35.41  Aligned_cols=24  Identities=13%  Similarity=0.213  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhh
Q 028084            7 EYVVALATIVGSVLFSIFGGVGIA   30 (214)
Q Consensus         7 ~f~i~~l~~iG~~lfi~y~gvGla   30 (214)
                      .++..+.++++.+.+++|-+..++
T Consensus       134 ~~i~~~~~~~~~~~~l~~~~~~l~  157 (571)
T TIGR02203       134 VLVRETLTVIGLFIVLLYYSWQLT  157 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHH
Confidence            344455555555555555555443

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=84.82  E-value=10  Score=33.31  Aligned_cols=25  Identities=12%  Similarity=0.192  Sum_probs=13.8

Q ss_pred             CChhHHHHHHhhhhhhHHHHHHHHH
Q 028084          161 HPFLNEVFIKLDDLWGLLGTAAFAF  185 (214)
Q Consensus       161 ~~fLN~~f~~l~~~fpll~~i~~~~  185 (214)
                      ..++|...-...+.+..+=|+.|++
T Consensus       184 y~~ia~~ik~se~~~~~lwyi~Y~v  208 (230)
T PF03904_consen  184 YKAIASKIKASESFWTYLWYIAYLV  208 (230)
T ss_pred             HHHHHHHHhhhHhHHHHHHHHHHhh
Confidence            3455665555555566555555543

>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies

Probab=84.29  E-value=9.3  Score=30.26  Aligned_cols=59  Identities=15%  Similarity=0.230  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhhhhhhhhh-HHHHhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028084           15 IVGSVLFSIFGGVGIACLP-LGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTL   74 (214)
Q Consensus        15 ~iG~~lfi~y~gvGlaaLP-i~lI~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l   74 (214)
                      .+-.--|..-|+.|++++- ++++..+.++.+| -..+|..+.|.++.+.++++.|+.|+.
T Consensus        55 ~l~~~Gfl~sg~~g~~~ls~lsW~~~y~rg~~~-~~~~q~d~Ak~ri~d~a~~v~~kake~  114 (118)
T PF01277_consen   55 GLAVAGFLTSGAFGLTALSSLSWMYNYFRGRHP-PGPDQLDYAKRRIADTASYVGQKAKEV  114 (118)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-CCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333345555666666554 4677777777777 778888888888988888888777764

Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=83.73  E-value=14  Score=26.78  Aligned_cols=25  Identities=12%  Similarity=0.154  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084           52 QYIKEATELGKKARELKKAADTLHQ   76 (214)
Q Consensus        52 ~~~~~~~~l~~~~~~l~e~~~~l~~   76 (214)
                      |..+.+....+-.++++|+|+.|+.
T Consensus        11 ~v~~v~~im~~Ni~~ll~Rge~L~~   35 (89)
T PF00957_consen   11 QVEEVKNIMRENIDKLLERGEKLEE   35 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCchHHH
Confidence            4455666666666777777777765

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>PRK10884 SH3 domain-containing protein; Provisional

Probab=82.98  E-value=15  Score=31.58  Aligned_cols=27  Identities=7%  Similarity=0.079  Sum_probs=16.5

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084           85 RKWRKNVKSVEKELLQLEEDVKLLEEM  111 (214)
Q Consensus        85 ~k~rr~l~~l~~~~~~Le~~~~~le~~  111 (214)
                      ++-++++..++.+.+.|+.+.+.++..
T Consensus       142 ~~L~~~l~~~~~~~~~l~~~~~~~~~~  168 (206)
T PRK10884        142 QKLKNQLIVAQKKVDAANLQLDDKQRT  168 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666666666655553

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=82.36  E-value=5.7  Score=31.73  Aligned_cols=55  Identities=20%  Similarity=0.238  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCC-cChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084           56 EATELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEEDVKLLEE  110 (214)
Q Consensus        56 ~~~~l~~~~~~l~e~~~~l~~~~~~~~-~s~k~rr~l~~l~~~~~~Le~~~~~le~  110 (214)
                      +-..++.+.++..|.+++++++-.+-+ --..-+.+++.+++.++.||.+...+|.
T Consensus        69 RId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~  124 (126)
T PF07889_consen   69 RIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE  124 (126)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333445555566666666665433222 1234566788888888888888777765

The region featured in this family is approximately 100 amino acids long.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=81.83  E-value=12  Score=32.50  Aligned_cols=101  Identities=13%  Similarity=0.129  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhHHH------HhhcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 028084            8 YVVALATIVGSVLFSIFGGVGIACLPLGL------IFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSG   81 (214)
Q Consensus         8 f~i~~l~~iG~~lfi~y~gvGlaaLPi~l------I~~f~~Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~   81 (214)
                      |+-|+..|++.++=-+++-+.-.+-=-+.      ..+.  +++. -+.+.+.++.+...++.+.+++.-+.-+.+-+..
T Consensus       101 YisGf~LFL~lvI~R~~~ll~~l~~l~~~~~~~~~~~~l--k~~~-~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~  177 (216)
T KOG1962|consen  101 YISGFVLFLSLVIRRLHTLLRELATLRANEKAMKENEAL--KKQL-ENSSKLEEENDKLKADLEKLETELEKKQKKLEKA  177 (216)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHhh-hcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            77888888888888777777765554442      1111  1111 3333344445555555555555554444432211


Q ss_pred             C-cChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084           82 S-KGRKWRKNVKSVEKELLQLEEDVKLLEEM  111 (214)
Q Consensus        82 ~-~s~k~rr~l~~l~~~~~~Le~~~~~le~~  111 (214)
                      . ..-.-++..+.+++|-..|-+|+.++++.
T Consensus       178 ~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~  208 (216)
T KOG1962|consen  178 QKKVDALKKQSEGLQDEYDRLLEEYSKLQEQ  208 (216)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            1 11223445555666666666666666555

>TIGR02976 phageshock_pspB phage shock protein B

Probab=80.65  E-value=8.6  Score=28.01  Aligned_cols=45  Identities=29%  Similarity=0.376  Sum_probs=28.7

Q ss_pred             hhhHHHHhhcccCCCcc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084           31 CLPLGLIFSFIRRPKAV--ITRSQYIKEATELGKKARELKKAADTLHQ   76 (214)
Q Consensus        31 aLPi~lI~~f~~Rpk~~--is~~~~~~~~~~l~~~~~~l~e~~~~l~~   76 (214)
                      ..|+-|+.-|.++.+..  .|.++ .+.-+++.++++++.|+-+.||+
T Consensus        17 Vap~wl~lHY~~k~~~~~~ls~~d-~~~L~~L~~~a~rm~eRI~tLE~   63 (75)
T TIGR02976        17 VAPLWLILHYRSKRKTAASLSTDD-QALLQELYAKADRLEERIDTLER   63 (75)
T ss_pred             HHHHHHHHHHHhhhccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45999999998876531  22222 22445666677777777777765

This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.

>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica

Probab=80.27  E-value=5  Score=35.87  Aligned_cols=41  Identities=15%  Similarity=0.240  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 028084           66 ELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM  111 (214)
Q Consensus        66 ~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~~  111 (214)
                      -+.|..+.++     .+.+..||.+++.+-..+|++|++.+..+..
T Consensus       166 ~v~~d~~~L~-----~~Lg~~Dr~kLd~yl~sireiE~rl~~~~~~  206 (302)
T PF07586_consen  166 LVREDAKSLR-----RRLGAEDRQKLDQYLDSIREIEKRLQQAEAW  206 (302)
T ss_pred             HHHHHHHHHH-----hhcCHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            4444444443     5578899999999999999999999777755

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-04

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 55  KEATELGKKARELKKAADTLH-QEERSGSKGRKWRKNVKSVEKELL-QLEEDV 105
            +A     +    +KA   L    +R   +  K + N +  +K    Q + D+
Sbjct: 101 LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 13/57 (22%)

Query: 70  AADTLHQEERSGSKGRKWRKNVKSVEKELLQLEE-DV---KLLEEMYPQGEKAETSW 122
            AD L QE  S    RKWR      E++  +L+E D     + +E   + +K    W
Sbjct: 76  QADRLTQEPESI---RKWR------EEQRKRLQELDAASKVMEQEWREKAKKDLEEW 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	89.74
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	87.56
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	80.03

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=89.74  E-value=1.1  Score=30.43  Aligned_cols=38  Identities=32%  Similarity=0.455  Sum_probs=24.4

Q ss_pred             hHHHHhhcccCCCcccCHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Q 028084           33 PLGLIFSFIRRPKAVITRSQYIKEATEL---GKKARELKKAADTLHQE   77 (214)
Q Consensus        33 Pi~lI~~f~~Rpk~~is~~~~~~~~~~l---~~~~~~l~e~~~~l~~~   77 (214)
                      |+|+--+      | |+-.||.+-|+.+   +.|.++|+.....+.++
T Consensus         2 ~~dlsDg------p-it~qeylevK~ALaaSeAkiQQLmkVN~~ls~E   42 (63)
T 2w6a_A            2 PLGSSDG------A-VTLQEYLELKKALATSEAKVQQLMKVNSSLSDE   42 (63)
T ss_dssp             CCC--CC------S-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCC------c-chHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHH
Confidence            5555555      3 9999999977777   45666666666666543

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=87.56  E-value=0.7  Score=30.48  Aligned_cols=44  Identities=14%  Similarity=0.182  Sum_probs=21.4

Q ss_pred             hHHHHhhccc--CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028084           33 PLGLIFSFIR--RPKAVITRSQYIKEATELGKKARELKKAADTLHQE   77 (214)
Q Consensus        33 Pi~lI~~f~~--Rpk~~is~~~~~~~~~~l~~~~~~l~e~~~~l~~~   77 (214)
                      |+|+|+.+.+  -|.. .+.+.+..+..++..+.++|.+.-++++++
T Consensus         3 AlefIk~~LG~~~p~~-~d~eaLk~E~~eLk~k~~~L~~~~~el~~~   48 (53)
T 2yy0_A            3 ALDFLKHHLGAATPEN-PEIELLRLELAEMKEKYEAIVEENKKLKAK   48 (53)
T ss_dssp             -------------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888998887  7755 555556666667777777777776666653

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=80.03  E-value=13  Score=27.58  Aligned_cols=57  Identities=25%  Similarity=0.348  Sum_probs=42.5

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 028084           48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEE  110 (214)
Q Consensus        48 is~~~~~~~~~~l~~~~~~l~e~~~~l~~~~~~~~~s~k~rr~l~~l~~~~~~Le~~~~~le~  110 (214)
                      +|++++..+=.+++++...+.+..+.++....      ..-.++..+..+++.|.++...|..
T Consensus        30 mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~------~~~~~v~eLe~everL~~ENq~L~~   86 (104)
T 3s9g_A           30 MSKQELIKEYLELEKSLSRMEDENNRLRLESK------RLDARVRELELELDRLRAENLQLLT   86 (104)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cchhhHHHHHHHHHHHHHHHHHHHH
Confidence            88999988888899888898888888876532      2235677788888888877665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d2hyda2	323	Putative multidrug export ATP-binding/permease pro	92.77

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.77  E-value=1.5  Score=33.56  Aligned_cols=16  Identities=6%  Similarity=0.289  Sum_probs=7.7

Q ss_pred             hhhhhhhhHHHHhhcc
Q 028084           26 GVGIACLPLGLIFSFI   41 (214)
Q Consensus        26 gvGlaaLPi~lI~~f~   41 (214)
                      .+.++..|+-.+-...
T Consensus       165 li~l~~~~~~~~~~~~  180 (323)
T d2hyda2         165 LAALFIFPFYILTVYV  180 (323)
T ss_dssp             HHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            3444555555554443