Citrus Sinensis ID: 028101

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MKLARFAFRSINANLSQESYRFSITRSLSTNPFSGNGNESSQGNNEPADEFERRIFGGGYGNSSDSGSFFRKLDRLQNAGNMRGGPGGRGGVSLDLEDMGESVNTTLSDGMQGKLREAARHFEYDSEEVDKDDYAFRPDVSFKTGMTYEPKDLDLTKPGVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKTNL
Secondary Structure (PSIPRED)
cccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHcEEEEccHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccHHHcccccccccccccccccccccccccccccccccccEccHHHHHHHccHHHHHHHHHHHHHHcHEEEccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MKLARFAFRSINANLSQESYRFSITRslstnpfsgngnessqgnnepadeferrifgggygnssdsgsffRKLDRLqnagnmrggpggrggvsldledmgesvnttlsdgMQGKLREAArhfeydseevdkddyafrpdvsfktgmtyepkdldltkpgvrktrrVEFEVTTKkvledadfrnVKFLTQFITEAGIIIKRSMVMLLKFLEKTNL
Flexible Loop (DISEMBL)
MKLARFAFRsinanlsqesYRFSITRSLStnpfsgngnessqgnnepADEFERRIFGGGYGNSSDSGSFFRKLDRLQNagnmrggpggRGGVSLDLEDMGESVNttlsdgmqgKLREAARHFeydseevdkddyafrpdvsfktgmtyepkdldltkpgvrktrrvefevttkkvledadfrnvkFLTQFITEAGIIIKRSMVMLLKFLEKTNL
Low Complexity Region (SEG)
MKLARFAFRSINANLSQESYRFSITRSLSTNPFsgngnessqgnnePADEFERRIfgggygnssdsgsffRKLDRLQNAGNMrggpggrggVSLDLEDMGESVNTTLSDGMQGKLREAARHFEYDSEEVDKDDYAFRPDVSFKTGMTYEPKDLDLTKPGVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKTNL
Disordered region (IsUnstruct)
**************************************************************************************************************************************AFR*DVSFKTGMTY******LT**GVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFL*****
Disordered Region (DISOPRED)
****R*AFRSINANLSQESY************************************************FFR**********************************TLSDGMQGKLREAARHFEYDSEEVDKDDYAFRPDVSFKTGMTYEPKDLD*******************KVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKT**
Disordered Region (DISEMBL)
MKLARFAFRSINANLSQESYRFSITRSLSTNPFS**************DEFERRIFGGGYGNSSDSGSFFRKLDRLQNAGNMRGGPGGRGGVSLDLEDMGESVNTTLSDGMQGKLREAARHFEYDSEEVDKDDYAFRPDVSFKTGMTYEPKDLDLTKPGVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKTNL
Disordered Region (DISPRO)
*K***FAFRS***NLSQESY***********************************************S*********************************SVNTTLSDGMQGKLREAARHFEYDSEEVDKDDYAFRPDVSFKTGMTYEPKDLDLTKPGVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKTN*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKLARFAFRSINANLSQESYRFSITRSLSTNPFSGNGNESSQGNNEPADEFERRIFGGGYGNSSDSGSFFRKLDRLQNAGNMRGGPGGRGGVSLDLEDMGESVNTTLSDGMQGKLREAARHFEYDSEEVDKDDYAFRPDVSFKTGMTYEPKDLDLTKPGVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKTNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
297745890	322	unnamed protein product [Vitis vinifera]	0.929	0.618	0.567	4e-51
359478834	273	PREDICTED: uncharacterized protein LOC10	0.929	0.728	0.567	5e-51
255573810	258	structural constituent of ribosome, puta	0.794	0.658	0.553	2e-41
255575892	271	structural constituent of ribosome, puta	0.813	0.642	0.531	4e-40
449450820	273	PREDICTED: uncharacterized protein LOC10	0.934	0.732	0.490	6e-39
356511323	277	PREDICTED: uncharacterized protein LOC10	0.915	0.707	0.482	7e-39
118486185	266	unknown [Populus trichocarpa]	0.789	0.635	0.527	2e-32
224117578	264	predicted protein [Populus trichocarpa]	0.789	0.640	0.527	2e-32
388509904	171	unknown [Lotus japonicus]	0.509	0.637	0.612	3e-29
294462182	340	unknown [Picea sitchensis]	0.705	0.444	0.458	3e-28

>gi|297745890|emb|CBI15946.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 117/206 (56%), Positives = 150/206 (72%), Gaps = 7/206 (3%)

Query: 1   MKLARFAFRSINANLSQESYRFSITRSLSTNPFSGNGNESSQGNN--EPADEFERRIFGG 58
           MK+ R A +S N  LS       + RSLST+P S N N+ +Q  N  E AD+FE RIF G
Sbjct: 50  MKMFRVAIQSFN-RLSCRIQWPQMIRSLSTSPISNNENDDNQKKNSFESADDFEHRIFAG 108

Query: 59  GYGNSSDSGSFFRKLDRLQNAGNM-RGGPGGRGGV-SLDLEDMGESVNTTLSDGMQGKLR 116
             G++ +S SF++KLDRL+ A ++ R G    GG  S  L+ + ES NT LSDGM GKL+
Sbjct: 109 TSGSNPNSDSFYQKLDRLEKAHDIYRLGSKPNGGSGSQFLDGLDESFNT-LSDGMDGKLK 167

Query: 117 EAARHFEYDSEEVDKDDYAFRPDVSFKTGMTYEPKDLDLTKPGVRKT-RRVEFEVTTKKV 175
           + A +FE++ +E+D++DYAFRPDV+FK GMTYEPKDLDLTKPG+RK+ +R EFEVTT++V
Sbjct: 168 KEATYFEFNPDEIDQEDYAFRPDVAFKPGMTYEPKDLDLTKPGIRKSYKRPEFEVTTEEV 227

Query: 176 LEDADFRNVKFLTQFITEAGIIIKRS 201
           L  ADFRNV+FL  FITEAGIIIKRS
Sbjct: 228 LRKADFRNVRFLAHFITEAGIIIKRS 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478834|ref|XP_002279055.2| PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 117/206 (56%), Positives = 150/206 (72%), Gaps = 7/206 (3%)

Query: 1   MKLARFAFRSINANLSQESYRFSITRSLSTNPFSGNGNESSQGNN--EPADEFERRIFGG 58
           MK+ R A +S N  LS       + RSLST+P S N N+ +Q  N  E AD+FE RIF G
Sbjct: 1   MKMFRVAIQSFN-RLSCRIQWPQMIRSLSTSPISNNENDDNQKKNSFESADDFEHRIFAG 59

Query: 59  GYGNSSDSGSFFRKLDRLQNAGNM-RGGPGGRGGV-SLDLEDMGESVNTTLSDGMQGKLR 116
             G++ +S SF++KLDRL+ A ++ R G    GG  S  L+ + ES NT LSDGM GKL+
Sbjct: 60  TSGSNPNSDSFYQKLDRLEKAHDIYRLGSKPNGGSGSQFLDGLDESFNT-LSDGMDGKLK 118

Query: 117 EAARHFEYDSEEVDKDDYAFRPDVSFKTGMTYEPKDLDLTKPGVRKT-RRVEFEVTTKKV 175
           + A +FE++ +E+D++DYAFRPDV+FK GMTYEPKDLDLTKPG+RK+ +R EFEVTT++V
Sbjct: 119 KEATYFEFNPDEIDQEDYAFRPDVAFKPGMTYEPKDLDLTKPGIRKSYKRPEFEVTTEEV 178

Query: 176 LEDADFRNVKFLTQFITEAGIIIKRS 201
           L  ADFRNV+FL  FITEAGIIIKRS
Sbjct: 179 LRKADFRNVRFLAHFITEAGIIIKRS 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573810|ref|XP_002527824.1| structural constituent of ribosome, putative [Ricinus communis] gi|223532748|gb|EEF34527.1| structural constituent of ribosome, putative [Ricinus communis]

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 135/188 (71%), Gaps = 18/188 (9%)

Query: 23  SITRSLSTN---PFSGN---GNESSQGNNEPADEFERRIFGGGYGNSSDSGSFFRKLDRL 76
           SI RS +T+   P S +   G + S    E  DEFE+RIFGG    S +S  FF+KLDR+
Sbjct: 11  SIGRSHTTHFAKPLSTSAPPGKKDSSNTLESNDEFEQRIFGG---ISENSLPFFQKLDRI 67

Query: 77  QNAGNMRGGPGGR--GGVSLDLEDMGESVNTTLSDGMQGKLREAARHFEYDSEEVDKDDY 134
           + A   R  PG R   G+S +L+ + E+   TLSDGM GKL++AAR+FE+D EE+ K+DY
Sbjct: 68  EKA---RDRPGSRMNEGISSNLDGLYEN---TLSDGMDGKLKKAARYFEFDPEEITKEDY 121

Query: 135 AFRPDVSFKTGMTYEPKDLDLTKPGVRK-TRRVEFEVTTKKVLEDADFRNVKFLTQFITE 193
           AFRPD++F+ GMTY+ KDLDL KPGVRK  +R EF+VTT++VLE ADFRNV+FL+ FITE
Sbjct: 122 AFRPDMTFRHGMTYDTKDLDLRKPGVRKPPKRYEFQVTTEEVLEKADFRNVRFLSNFITE 181

Query: 194 AGIIIKRS 201
           AGI+ KRS
Sbjct: 182 AGIMHKRS 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575892|ref|XP_002528843.1| structural constituent of ribosome, putative [Ricinus communis] gi|223531694|gb|EEF33517.1| structural constituent of ribosome, putative [Ricinus communis]

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 102/192 (53%), Positives = 135/192 (70%), Gaps = 18/192 (9%)

Query: 23  SITRSLSTN---PFS---GNGNESSQGNNEPADEFERRIFGGGYGNSSDSGSFFRKLDRL 76
           SI RS +T+   P S    +G + S    E  +EFE+RIFGG    S +S  FF+KLDR+
Sbjct: 24  SIGRSHTTHFAKPLSTSASHGKKDSSNTLESNNEFEQRIFGG---ISENSLPFFQKLDRI 80

Query: 77  QNAGNMRGGPGGR--GGVSLDLEDMGESVNTTLSDGMQGKLREAARHFEYDSEEVDKDDY 134
           + A   R  PG R   G+S +L+ + E+   TLSDGM GKL++AAR+FE+D EE+ K+DY
Sbjct: 81  EKA---RNRPGSRMNEGISSNLDGLYEN---TLSDGMDGKLKKAARYFEFDPEEITKEDY 134

Query: 135 AFRPDVSFKTGMTYEPKDLDLTKPGVRK-TRRVEFEVTTKKVLEDADFRNVKFLTQFITE 193
           AFRPD++F+ GMTY+ KDLDL KPGVRK  +R EF+VTT++VLE AD RNV+FL+ FITE
Sbjct: 135 AFRPDMTFRRGMTYDTKDLDLRKPGVRKPPKRYEFQVTTEEVLEKADSRNVRFLSNFITE 194

Query: 194 AGIIIKRSMVML 205
           AGI+ KRS   +
Sbjct: 195 AGIMHKRSKTKI 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450820|ref|XP_004143160.1| PREDICTED: uncharacterized protein LOC101213524 [Cucumis sativus] gi|449496565|ref|XP_004160167.1| PREDICTED: uncharacterized LOC101213524 [Cucumis sativus]

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 101/206 (49%), Positives = 133/206 (64%), Gaps = 6/206 (2%)

Query: 1   MKLARFAFRSINANLSQESYRFSITRSLSTNPFSGNG----NESSQGNNEPADEFERRIF 56
           M+  + A R++   LS+   + S+ R+LSTN   G+G    N+    + E AD+FERRIF
Sbjct: 1   MRTFQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGKFDSFETADDFERRIF 60

Query: 57  GGGYGNSSDSGSFFRKLDRLQNAGNMRGGPGGRGGVSLDLEDMGESVNTTLSDGMQGKLR 116
           GGG    S + +FF+K DRL       G     G     L D  ++ +T LSDGM GKL+
Sbjct: 61  GGGSMVDSGNDAFFQKFDRLGKPRERIGSKLSGGNNFHALYDREDNFDT-LSDGMDGKLK 119

Query: 117 EAARHFEYDSEEVDKDDYAFRPDVSFKTGMTYEPKDLDLTKPGVRK-TRRVEFEVTTKKV 175
           +A+ +F++D EE++KDDY FR D+SF  G TY  KDLDLTKPG RK  +RVEF+VTT++ 
Sbjct: 120 KASTYFKFDPEEIEKDDYTFRADMSFSPGSTYNIKDLDLTKPGFRKPPKRVEFQVTTEEA 179

Query: 176 LEDADFRNVKFLTQFITEAGIIIKRS 201
           L  ADFRNV+FL  FITEAGII KRS
Sbjct: 180 LRKADFRNVRFLANFITEAGIINKRS 205

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511323|ref|XP_003524376.1| PREDICTED: uncharacterized protein LOC100820548 [Glycine max]

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 98/203 (48%), Positives = 129/203 (63%), Gaps = 7/203 (3%)

Query: 1   MKLARFAFRSINANLSQESYRFSITRSLSTNPFSGNGNESSQGNNEPADEFERRIFGGGY 60
           MK+   A RSI+ANL  + ++  + RSLST  F+ N   + Q NN  + E E   FGG  
Sbjct: 12  MKIVSVAVRSISANLPNQFHQSHLLRSLSTWKFTDNATGNRQFNNSESPE-ESEQFGGNR 70

Query: 61  GNSSDSGSFFRKLDRLQNAGNMRGGPGGRGGVSLD-LEDMGESVNTTLSDGMQGKLREAA 119
           G  +   S F K ++    G  R  PG   G S + + D+ E+ +T L+DGM GKL  AA
Sbjct: 71  GKYAQLDSIFEKFNQ---QGMARQRPGSVNGASSERMHDLEETYDT-LTDGMDGKLMNAA 126

Query: 120 RHFEYDSEEVDKDDYAFRPDVSFKTGMTYEPKDLDLTKPGVRK-TRRVEFEVTTKKVLED 178
            +FE+D +E++K+DYAFR D +F  G  Y+ KDLDLTKPGV K  +R EF  TTK+VL  
Sbjct: 127 TYFEFDEDEIEKEDYAFRYDANFPLGSKYDVKDLDLTKPGVHKPPKREEFTTTTKEVLSK 186

Query: 179 ADFRNVKFLTQFITEAGIIIKRS 201
           ADFRNV+FL +FITEAGI+IKRS
Sbjct: 187 ADFRNVRFLAKFITEAGILIKRS 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486185|gb|ABK94935.1| unknown [Populus trichocarpa]

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/182 (52%), Positives = 119/182 (65%), Gaps = 13/182 (7%)

Query: 24  ITRSLSTNPFSGN--GNESSQGNNEPADEFERRIFGGGYGNSSDSGSFFRKLDRLQNAGN 81
           + +SLSTN  S N  G+  S  + E AD FE+RIFGG  G +S S SFF+KLDRL  A  
Sbjct: 27  LIKSLSTNAPSDNWIGDNQSSNSFESADGFEQRIFGGIDGGNSHSESFFQKLDRLAKA-- 84

Query: 82  MRGGPGGR---GGVSLDLEDMGESVNTTLSDGMQGKLREAARHFEYDSEEVDKDDYAFRP 138
            R GPG R      S  + D+  S NT L DGM  KL+EAA + + D +++D+    +RP
Sbjct: 85  -RNGPGSRLNERNSSEMVNDLDSSFNT-LKDGMDEKLQEAAGYIDVDIDDIDE----YRP 138

Query: 139 DVSFKTGMTYEPKDLDLTKPGVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIII 198
           D  F+ G TY+ KDLDLTKP VR+ RR EF VTT +VL  ADFRNV+FL  FIT+AGIII
Sbjct: 139 DAHFEDGDTYDIKDLDLTKPFVRRERRDEFCVTTAEVLSKADFRNVRFLANFITDAGIII 198

Query: 199 KR 200
           KR
Sbjct: 199 KR 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117578|ref|XP_002331671.1| predicted protein [Populus trichocarpa] gi|222874090|gb|EEF11221.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/182 (52%), Positives = 119/182 (65%), Gaps = 13/182 (7%)

Query: 24  ITRSLSTNPFSGN--GNESSQGNNEPADEFERRIFGGGYGNSSDSGSFFRKLDRLQNAGN 81
           + +SLSTN  S N  G+  S  + E AD FE+RIFGG  G +S S SFF+KLDRL  A  
Sbjct: 25  LIKSLSTNAPSDNWIGDNQSSNSFESADGFEQRIFGGIDGGNSHSESFFQKLDRLAKA-- 82

Query: 82  MRGGPGGR---GGVSLDLEDMGESVNTTLSDGMQGKLREAARHFEYDSEEVDKDDYAFRP 138
            R GPG R      S  + D+  S NT L DGM  KL+EAA + + D +++D+    +RP
Sbjct: 83  -RNGPGSRLNERNSSEMVNDLDSSFNT-LKDGMDEKLQEAAGYIDVDIDDIDE----YRP 136

Query: 139 DVSFKTGMTYEPKDLDLTKPGVRKTRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIII 198
           D  F+ G TY+ KDLDLTKP VR+ RR EF VTT +VL  ADFRNV+FL  FIT+AGIII
Sbjct: 137 DAHFEDGDTYDIKDLDLTKPFVRRERRDEFCVTTAEVLSKADFRNVRFLANFITDAGIII 196

Query: 199 KR 200
           KR
Sbjct: 197 KR 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509904|gb|AFK43018.1| unknown [Lotus japonicus]

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/111 (61%), Positives = 87/111 (78%), Gaps = 2/111 (1%)

Query: 96  LEDMGESVNTTLSDGMQGKLREAARHFEYDSEEVDKDDYAFRPDVSFKTGMTYEPKDLDL 155
           ++D+ +S +T LSDG+ GKL+EAA +FE+D EE+DK+DY+FR D +F  G TY  KDLDL
Sbjct: 2   IDDLEQSFDT-LSDGLDGKLKEAANYFEFDPEEIDKEDYSFRYDTTFHPGSTYNAKDLDL 60

Query: 156 TKPGVRKTR-RVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVML 205
           TKPGV+K   R EF+VTTK+VL  ADFRNV+FL  FITEAGI+ KRSM  +
Sbjct: 61  TKPGVQKPPIRPEFKVTTKEVLSQADFRNVRFLANFITEAGILKKRSMTKI 111

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294462182|gb|ADE76643.1| unknown [Picea sitchensis]

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 103/170 (60%), Gaps = 19/170 (11%)

Query: 42  QGNNEPADEFERRIFGGGYGNSSDSGSFFRKLDRLQNAGNMRGGPGGRGGVSLDLEDMGE 101
           Q + E AD+FERR+FG    N+S + SFF+KLDR+  A        G+ G     ED  E
Sbjct: 91  QSSFESADDFERRMFGDFSANNSHTDSFFQKLDRIDKAR-------GKAGSGFGKEDWNE 143

Query: 102 SVNT----------TLSDGMQGKLREAARHFEYDSEEVDKDDYAFRPDVSFKTGMTYEPK 151
            +            TL+DGM  KL++AA  ++Y     + +DY+FRPD +F  G TY  K
Sbjct: 144 KLGWEDDQAGHGADTLADGMDDKLKKAALEYDYGVLRPE-EDYSFRPDATFLPGSTYTVK 202

Query: 152 DLDLTKPGVRKT-RRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKR 200
           DLDLTKP VR+  +R+EF+ TT +VL  ADFRNV+FL  FITEAGI+  R
Sbjct: 203 DLDLTKPAVRRPFKRLEFQTTTGEVLRKADFRNVRFLQNFITEAGILYPR 252

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2007397	261	AT1G07210 [Arabidopsis thalian	0.415	0.340	0.478	2.8e-20

TAIR|locus:2007397 AT1G07210 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 45/94 (47%), Positives = 61/94 (64%)

Query:   108 SDGMQGKLREAARHFEYDSEEVDKDDYAFRPDVSFKTGMTYEPK-DLDLTKPGVRKTRRV 166
             SDG+ GKL+EAA  +  D  +  K+ Y+FRPD +   GM   P+    +  P    ++  
Sbjct:   107 SDGVDGKLKEAALAYNMDEGDGFKE-YSFRPDFNNSWGMNNFPRMQKQMQNPRQNNSKS- 164

Query:   167 EFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKR 200
               EVTT++VL++ADFRNV+FL  FITEAGIIIKR
Sbjct:   165 --EVTTEEVLKNADFRNVRFLANFITEAGIIIKR 196

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.01710031	SubName- Full=Putative uncharacterized protein; (264 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.163.69.1	SubName- Full=Putative uncharacterized protein; (192 aa)	•			•			•		0.609
	grail3.17963000101	Predicted protein (126 aa)	•						•		0.539

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
COG0238	75	RpsR Ribosomal protein S18 [Translation, ribosomal	99.83
PRK13401	82	30S ribosomal protein S18; Provisional	99.77
TIGR00165	70	S18 ribosomal protein S18. This ribosomal small su	99.77
PRK00391	79	rpsR 30S ribosomal protein S18; Reviewed	99.76
PRK13400	147	30S ribosomal protein S18; Provisional	99.74
CHL00077	86	rps18 ribosomal protein S18	99.65
PF01084	54	Ribosomal_S18: Ribosomal protein S18; InterPro: IP	99.48
KOG3162	159	consensus Mitochondrial/chloroplast ribosomal prot	99.16
KOG4021	239	consensus Mitochondrial ribosomal protein S18b [Tr	94.92

>COG0238 RpsR Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=7.7e-22  Score=147.92  Aligned_cols=50  Identities=26%  Similarity=0.397  Sum_probs=48.0

Q ss_pred             CCCcceeeehhhhhhcccccCHHHHHhhcccccceeecccchhhhhhhhh
Q 028101          163 TRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKT  212 (214)
Q Consensus       163 ~~R~K~c~ft~evlekiDYKnV~fL~~FITE~GKIiPRR~TG~sAK~Qr~  212 (214)
                      .+|+|+|+||+++++.||||||++|++||||.|||+|||+||+||||||.
T Consensus        12 ~rrrk~c~~~~~~~~~iDYKd~~~L~rfise~GKI~prRiTG~sak~QR~   61 (75)
T COG0238          12 FRRRKVCRFTAEGIEEIDYKDVELLKRFISERGKILPRRITGTSAKHQRR   61 (75)
T ss_pred             cccccccccccccCCccCccCHHHHHHHhcccCcccccccccccHHHHHH
Confidence            37889999999999999999999999999999999999999999999984

>PRK13401 30S ribosomal protein S18; Provisional

Probab=99.77  E-value=8.2e-20  Score=138.56  Aligned_cols=50  Identities=18%  Similarity=0.324  Sum_probs=47.7

Q ss_pred             CCCcceeeehhhhhhcccccCHHHHHhhcccccceeecccchhhhhhhhh
Q 028101          163 TRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKT  212 (214)
Q Consensus       163 ~~R~K~c~ft~evlekiDYKnV~fL~~FITE~GKIiPRR~TG~sAK~Qr~  212 (214)
                      .+|+|+|+||...++.||||||++|++||||+|||+|||+||+|+||||.
T Consensus        10 ~~r~k~c~~~~~~~~~iDYKnv~lL~~Fis~~GkIlpRR~TGl~~k~QR~   59 (82)
T PRK13401         10 PTKAKKNLLDSLGIESVDYKDTALLRTFISDRGKIRSRRVTGLTVQQQRQ   59 (82)
T ss_pred             CCCCCCCCcccCCCCcCCccCHHHHHHhcCCCccCcCcccCCcCHHHHHH
Confidence            37889999999999999999999999999999999999999999999984

>TIGR00165 S18 ribosomal protein S18

Probab=99.77  E-value=7.5e-20  Score=134.70  Aligned_cols=49  Identities=22%  Similarity=0.392  Sum_probs=46.6

Q ss_pred             CCcceeeehhhhhhcccccCHHHHHhhcccccceeecccchhhhhhhhh
Q 028101          164 RRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKT  212 (214)
Q Consensus       164 ~R~K~c~ft~evlekiDYKnV~fL~~FITE~GKIiPRR~TG~sAK~Qr~  212 (214)
                      +|+++|++|.+.++.+|||||++|++||||.|||+|||+||+|+||||.
T Consensus         3 ~r~k~c~~~~~~~~~iDYKnv~lL~~Fis~~GkIlpRriTgl~~k~Qr~   51 (70)
T TIGR00165         3 RRKKYCRFTAEGIQFIDYKDLDLLKKFISERGKILPRRITGTSAKYQRR   51 (70)
T ss_pred             CCCCCCCccCCCCCcCCccCHHHHHHhcCCCCeEcCCccCCcCHHHHHH
Confidence            4678999999999999999999999999999999999999999999984

This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically.

>PRK00391 rpsR 30S ribosomal protein S18; Reviewed

Probab=99.76  E-value=2.4e-19  Score=134.57  Aligned_cols=49  Identities=24%  Similarity=0.377  Sum_probs=47.1

Q ss_pred             CCcceeeehhhhhhcccccCHHHHHhhcccccceeecccchhhhhhhhh
Q 028101          164 RRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKT  212 (214)
Q Consensus       164 ~R~K~c~ft~evlekiDYKnV~fL~~FITE~GKIiPRR~TG~sAK~Qr~  212 (214)
                      +|++.|+||...++.||||||++|++|||+.|||+|||+||+|+||||.
T Consensus        12 ~r~k~c~~c~~~~~~iDYKnv~lL~~Fis~~GkIlprriTG~~~k~Qr~   60 (79)
T PRK00391         12 RRKKVCRFCAEKIEYIDYKDVELLKKFISERGKILPRRITGTSAKHQRQ   60 (79)
T ss_pred             CCCCCCcccCCCCCcCCccCHHHHHHhcCCCceEcCcccCCcCHHHHHH
Confidence            6789999999999999999999999999999999999999999999984

>PRK13400 30S ribosomal protein S18; Provisional

Probab=99.74  E-value=5.2e-19  Score=146.18  Aligned_cols=49  Identities=12%  Similarity=0.174  Sum_probs=47.1

Q ss_pred             CCcceeeehhhhhhcccccCHHHHHhhcccccceeecccchhhhhhhhh
Q 028101          164 RRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKT  212 (214)
Q Consensus       164 ~R~K~c~ft~evlekiDYKnV~fL~~FITE~GKIiPRR~TG~sAK~Qr~  212 (214)
                      +|+|+|+||.+.+..||||||++|++||||+|||+|||+||+|+||||.
T Consensus        20 ~RrK~C~~c~~~~~~IDYKNv~lL~~FISe~GKIlPRRiTGlcaK~QRk   68 (147)
T PRK13400         20 PKRKICSFCAEKVSRIDYKDSAKLARYISDRGKIEPRRRTGTCARHQRA   68 (147)
T ss_pred             CCCCCCCccCCCCCccCCcCHHHHHHhcCcCccCcCcccCCcCHHHHHH
Confidence            6789999999999999999999999999999999999999999999984

>CHL00077 rps18 ribosomal protein S18

Probab=99.65  E-value=4.3e-17  Score=124.77  Aligned_cols=47  Identities=23%  Similarity=0.367  Sum_probs=44.0

Q ss_pred             CCcceeeehhhhhhcccccCHHHHHhhcccccceeecccchhhhhhhhh
Q 028101          164 RRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKT  212 (214)
Q Consensus       164 ~R~K~c~ft~evlekiDYKnV~fL~~FITE~GKIiPRR~TG~sAK~Qr~  212 (214)
                      .|+++|++|...  .||||||++|++|||++|+|+|||+||+|||+||.
T Consensus        15 ~rrk~~~~~~~~--~iDYKnv~lL~~Fis~~GkIlpRriTGl~~K~QR~   61 (86)
T CHL00077         15 FRRRLPPIQSGD--RIDYKNMSLLSRFISEQGKILSRRVTRLTLKQQRL   61 (86)
T ss_pred             cccCCCCCCCCC--cCCccCHHHHHHhcCCCCeEcCcccCCcCHHHHHH
Confidence            577999999984  79999999999999999999999999999999984

>PF01084 Ribosomal_S18: Ribosomal protein S18; InterPro: IPR001648 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.48  E-value=8.4e-15  Score=102.86  Aligned_cols=37  Identities=32%  Similarity=0.511  Sum_probs=35.1

Q ss_pred             hhcccccCHHHHHhhcccccceeecccchhhhhhhhh
Q 028101          176 LEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKT  212 (214)
Q Consensus       176 lekiDYKnV~fL~~FITE~GKIiPRR~TG~sAK~Qr~  212 (214)
                      .+.+|||||++|++|||+.|+|+|||+||+|+|+||.
T Consensus         4 ~~~idykn~~lL~~Fi~~~GkIl~rr~Tgl~~k~Qr~   40 (54)
T PF01084_consen    4 NEYIDYKNVELLSQFISPTGKILPRRITGLCAKQQRK   40 (54)
T ss_dssp             SSSSSSSSHHHHGCGBTTSSSBSTHHHHTSTHHHHHH
T ss_pred             CCcCCcCCHHHHHHHcCcccceehhhhccccHHHHHH
Confidence            3689999999999999999999999999999999984

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S18 is known to be involved in binding the aminoacyl-tRNA complex in Escherichia coli [], and appears to be situated at the tRNA A-site. Experimental evidence has revealed that S18 is well exposed on the surface of the E. coli ribosome, and is a secondary rRNA binding protein []. S18 belongs to a family of ribosomal proteins [] that includes: eubacterial S18; metazoan mitochondrial S18, algal and plant chloroplast S18; and cyanelle S18.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2UXD_R 3I8G_U 3UZ7_U 1N33_R 2XSY_R 3V24_R 3OGY_R 2XUY_R 2XFZ_R 3UXT_R ....

>KOG3162 consensus Mitochondrial/chloroplast ribosomal protein S18 [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=1.3e-11  Score=103.19  Aligned_cols=76  Identities=18%  Similarity=0.252  Sum_probs=62.8

Q ss_pred             cccccccccchhhHHHHHHhhhcccCCCccCCCCcccCCCCCCCCCCccCCCCCCCCCccccCCCCcceeeehhhhhh-c
Q 028101          100 GESVNTTLSDGMQGKLREAARHFEYDSEEVDKDDYAFRPDVSFKTGMTYEPKDLDLTKPGVRKTRRVEFEVTTKKVLE-D  178 (214)
Q Consensus       100 ~e~~~dtl~DGmd~kL~~aA~~f~~~~~e~d~~dy~~rpd~~f~~G~ty~~~Dldltkp~~~k~~R~K~c~ft~evle-k  178 (214)
                      .+.. +-..+|+.++.+++..++.+++.+.                                    .+.|..|...++ +
T Consensus        37 ~~tq-~~~~~~~~~s~~e~~~~~~n~~~~~------------------------------------~~~c~~c~~~Vd~~   79 (159)
T KOG3162|consen   37 NETQ-ENSKGGVSSSSKELPIASNNPEKKS------------------------------------EPQCILCTKGVDIK   79 (159)
T ss_pred             eecc-cCCccccccchhhhhhhcCCCcccC------------------------------------cccCcccccCCCcc
Confidence            3466 5788999999999999999887722                                    366776655543 4


Q ss_pred             ccccCHHHHHhhcccccceeecccchhhhhhhhh
Q 028101          179 ADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKT  212 (214)
Q Consensus       179 iDYKnV~fL~~FITE~GKIiPRR~TG~sAK~Qr~  212 (214)
                      .+||||.+|++||+|.|.|+||++||+|+|.||.
T Consensus        80 ~~yknv~iLsqFv~~~G~il~RkiTGLc~k~Qrk  113 (159)
T KOG3162|consen   80 LSYKNVLLLSQFVSEDGGILPRKITGLCAKNQRK  113 (159)
T ss_pred             cccCccchhhhhcccccceecchhhhhhHHHHHH
Confidence            5699999999999999999999999999999984

>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]

Probab=94.92  E-value=0.012  Score=52.62  Aligned_cols=43  Identities=21%  Similarity=0.156  Sum_probs=38.1

Q ss_pred             eeeehhhhhhcccccCHHHHHhhccc-ccceeecccchhhhhhh
Q 028101          168 FEVTTKKVLEDADFRNVKFLTQFITE-AGIIIKRSMVMLLKFLE  210 (214)
Q Consensus       168 ~c~ft~evlekiDYKnV~fL~~FITE-~GKIiPRR~TG~sAK~Q  210 (214)
                      -|+.|-+.--++||+|+++|.+||.+ +|-||-=-.||+|.|+.
T Consensus       110 pCPICRDeyL~~DyRN~~LlEQF~~~htg~~i~y~ktGlC~kqh  153 (239)
T KOG4021|consen  110 PCPICRDEYLYFDYRNPGLLEQFLADHTGQPIDYLKTGLCRKQH  153 (239)
T ss_pred             CCCccccceEEEeccCHHHHHHHhccCCCCchhhhhcchHHHHH
Confidence            49999888889999999999999987 57788888999999864

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
3i1m_R	75	30S ribosomal protein S18; ribosome structure, pro	99.8
2vqe_R	88	30S ribosomal protein S18; tRNA-binding, rRNA-bind	99.78
3bbn_R	103	Ribosomal protein S18; small ribosomal subunit, sp	99.64
3r8n_R	55	30S ribosomal protein S18; protein biosynthesis, R	99.61

>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...

Probab=99.80  E-value=6.6e-21  Score=140.64  Aligned_cols=49  Identities=22%  Similarity=0.388  Sum_probs=34.3

Q ss_pred             CCcceeeehhhhhhcccccCHHHHHhhcccccceeecccchhhhhhhhh
Q 028101          164 RRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKT  212 (214)
Q Consensus       164 ~R~K~c~ft~evlekiDYKnV~fL~~FITE~GKIiPRR~TG~sAK~Qr~  212 (214)
                      +|+|+|+||++.++.||||||++|++||||+|||+|||+||+||||||.
T Consensus         6 ~r~k~C~fc~~~~~~iDYknv~lL~~Fis~~GkIlprr~TGlc~k~QR~   54 (75)
T 3i1m_R            6 RRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQ   54 (75)
T ss_dssp             --------------CCSTTCHHHHGGGBCTTCCBCCHHHHCCCHHHHHH
T ss_pred             CCCCCCCcccCCCCcCCcCCHHHHHHHcCcCCCCcCccccccCHHHHHH
Confidence            6889999999999999999999999999999999999999999999984

>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...

Probab=99.78  E-value=1.9e-20  Score=141.48  Aligned_cols=50  Identities=26%  Similarity=0.313  Sum_probs=47.7

Q ss_pred             CCCcceeeehhhhhhcccccCHHHHHhhcccccceeecccchhhhhhhhh
Q 028101          163 TRRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKT  212 (214)
Q Consensus       163 ~~R~K~c~ft~evlekiDYKnV~fL~~FITE~GKIiPRR~TG~sAK~Qr~  212 (214)
                      .+|+|+|+||.+.++.||||||++|++||||+|||+|||+||+||||||.
T Consensus        16 ~~r~k~C~~c~~~~~~iDYKnv~lL~~Fise~GkIlprriTGlc~k~QR~   65 (88)
T 2vqe_R           16 PSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSGKEQRI   65 (88)
T ss_dssp             CCCSCCTTTSCCCEETTCTTCHHHHGGGBCSSSCBCCHHHHCCCHHHHHH
T ss_pred             CCCCCCCCccCCCCCcCCcCCHHHHHHHcccCCCCCchhhcCCCHHHHHH
Confidence            36889999999999999999999999999999999999999999999984

>3bbn_R Ribosomal protein S18; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.64  E-value=2.3e-17  Score=128.54  Aligned_cols=47  Identities=23%  Similarity=0.396  Sum_probs=35.1

Q ss_pred             CCcceeeehhhhhhcccccCHHHHHhhcccccceeecccchhhhhhhhh
Q 028101          164 RRVEFEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKT  212 (214)
Q Consensus       164 ~R~K~c~ft~evlekiDYKnV~fL~~FITE~GKIiPRR~TG~sAK~Qr~  212 (214)
                      -|++.|++|..  +.||||||++|++||||+|||+|||+||+||||||.
T Consensus        15 ~rr~~cpi~~~--~~IDYKnv~lL~~FIse~GKIlpRRiTGlcaK~QR~   61 (103)
T 3bbn_R           15 FRRRLPPIQSG--DRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRL   61 (103)
T ss_dssp             ----------C--CSSCCSCHHHHTTTSCSSSSCCCSSSTTCCTTTTTT
T ss_pred             ccCCCCCcCCC--CcCCcCCHHHHHHHhccCCCCcCccccCCCHHHHHH
Confidence            46789999973  689999999999999999999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d2qalr1	55	a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherich	0.002
d2uubr1	70	a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus t	0.002

>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein S18
family: Ribosomal protein S18
domain: Ribosomal protein S18
species: Escherichia coli [TaxId: 562]

 Score = 33.4 bits (77), Expect = 0.002
 Identities = 7/25 (28%), Positives = 16/25 (64%)

Query: 178 DADFRNVKFLTQFITEAGIIIKRSM 202
           + D++++  L  +ITE+G I+   +
Sbjct: 1   EIDYKDIATLKNYITESGKIVPSRI 25

>d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus thermophilus [TaxId: 274]} Length = 70

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein S18
family: Ribosomal protein S18
domain: Ribosomal protein S18
species: Thermus thermophilus [TaxId: 274]

 Score = 33.8 bits (78), Expect = 0.002
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 172 TKKVLEDADFRNVKFLTQFITEAGIIIKRSMVML 205
           T    +  D+RNV+ L +F++E G I+ R    L
Sbjct: 7   TLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGL 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d2uubr1	70	Ribosomal protein S18 {Thermus thermophilus [TaxId	99.58
d2qalr1	55	Ribosomal protein S18 {Escherichia coli [TaxId: 56	99.55

>d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein S18
family: Ribosomal protein S18
domain: Ribosomal protein S18
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=9e-17  Score=115.66  Aligned_cols=45  Identities=27%  Similarity=0.331  Sum_probs=39.8

Q ss_pred             eeeehhhhhhcccccCHHHHHhhcccccceeecccchhhhhhhhh
Q 028101          168 FEVTTKKVLEDADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKT  212 (214)
Q Consensus       168 ~c~ft~evlekiDYKnV~fL~~FITE~GKIiPRR~TG~sAK~Qr~  212 (214)
                      .|..+...++.||||||++|++|||+.|+|+|||+||+|+|+||-
T Consensus         3 k~k~~~~~~~~iDYKn~~lL~~Fis~~GkIlprr~TGl~~k~Qr~   47 (70)
T d2uubr1           3 KVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRI   47 (70)
T ss_dssp             CTTTSSCSCCTTCTTCHHHHGGGBCSSSCBCCHHHHCCCHHHHHH
T ss_pred             CccccccccCccCccCHHHHHHhcCCCCeEecCccCCCCHHHHHH
Confidence            344455557899999999999999999999999999999999984

>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Ribosomal protein S18
family: Ribosomal protein S18
domain: Ribosomal protein S18
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=3.9e-16  Score=107.50  Aligned_cols=35  Identities=20%  Similarity=0.430  Sum_probs=33.5

Q ss_pred             cccccCHHHHHhhcccccceeecccchhhhhhhhh
Q 028101          178 DADFRNVKFLTQFITEAGIIIKRSMVMLLKFLEKT  212 (214)
Q Consensus       178 kiDYKnV~fL~~FITE~GKIiPRR~TG~sAK~Qr~  212 (214)
                      .||||||++|++|||+.|||+|||+||+|+|+||.
T Consensus         1 ~iDYKn~~lL~~Fis~~GkI~~rr~Tgl~~k~Qr~   35 (55)
T d2qalr1           1 EIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQ   35 (55)
T ss_dssp             CCCSSCHHHHGGGBCTTSSBCCSTTTCCCHHHHHH
T ss_pred             CCCcccHHHHHHHcCCCCeEeCCccCCCCHHHHHH
Confidence            48999999999999999999999999999999984