Citrus Sinensis ID: 028187

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
MAYSEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKVG
ccccccccccHHHHHHccccccccEEEEEEHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEccccHHHHHHHHHcHHcHHHHHHHHcccccccEEEEccccHHHHHcHHHHHHHHHHHHcccEEEcccccccccccccccccccHHHHHHHHHHHHHHcccccccccc
cccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHcccEEEEEEcccHHHHccHHHcccccEEEcccHHHHHccccccccHHHHHHHHccEEEEEEEcHHHHHHHHccccccHHHHHHHcccccccEEEEEcccHHHHHcHHHHHHHHHHHHHccEEcccEccccccccccccEcccHHHHHHHHHHHHHHcHHccccccc
mayseptstdrEAMQVNTGLRKPRILLAAsgsvaaikfgnlCHCFSEWAEVRAVATKSSlhfidraalpkdvifytdedewatwnkigdSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAwdynkplfvapamntfmwnnpfterhLMSIDElgislippvskrlacgdygngamaepsLIYSTVRLFAEsrnqsgdgkvg
mayseptstdreamQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSlhfidraalpkdVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAEsrnqsgdgkvg
MAYSEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKVG
********************RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLF*************
***********************RILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESR**S******
**************QVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAES**********
*******************LRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQS******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAYSEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKVG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query212 2.2.26 [Sep-21-2011]
Q9SWE5209 Phosphopantothenoylcystei yes no 0.943 0.956 0.82 6e-99
P94063201 Probable phosphopantothen no no 0.896 0.945 0.821 9e-94
Q8BZB2204 Phosphopantothenoylcystei yes no 0.825 0.857 0.502 8e-46
Q96CD2204 Phosphopantothenoylcystei yes no 0.867 0.901 0.473 8e-43
Q9UTI7 625 Probable thymidylate synt yes no 0.787 0.267 0.465 2e-37
Q54Y51197 Putative phosphopantothen yes no 0.830 0.893 0.426 2e-36
P36076571 Coenzyme A biosynthesis p yes no 0.971 0.360 0.381 4e-33
Q08438674 Phosphopantothenoylcystei no no 0.608 0.191 0.462 3e-28
P36024562 Phosphopantothenoylcystei no no 0.570 0.215 0.475 8e-28
Q12600531 Protein SIS2 OS=Candida t N/A no 0.778 0.310 0.398 1e-26
>sp|Q9SWE5|HAL3A_ARATH Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3A PE=1 SV=1 Back     alignment and function desciption
 Score =  359 bits (922), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 164/200 (82%), Positives = 183/200 (91%)

Query: 10  DREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALP 69
           DR+ M+VNT  RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP
Sbjct: 7   DRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLP 66

Query: 70  KDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV 129
           ++V  YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+
Sbjct: 67  QEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCII 126

Query: 130 RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEP 189
           RAWDY KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLACGDYGNGAMAEP
Sbjct: 127 RAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEP 186

Query: 190 SLIYSTVRLFAESRNQSGDG 209
           SLIYSTVRLF ES+     G
Sbjct: 187 SLIYSTVRLFWESQAHQQTG 206
Involved in plant growth and salt and osmotic tolerance. Catalyzes the decarboxylation of 4'-phosphopantothenoylcysteine to 4'-phosphopantetheine, a key step in coenzyme A biosynthesis. The enzyme is also able to decarboxylate pantothenoylcysteine to pantothenoylcysteamine.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 6
>sp|P94063|HAL3B_ARATH Probable phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3B PE=2 SV=2 Back     alignment and function description
>sp|Q8BZB2|COAC_MOUSE Phosphopantothenoylcysteine decarboxylase OS=Mus musculus GN=Ppcdc PE=2 SV=1 Back     alignment and function description
>sp|Q96CD2|COAC_HUMAN Phosphopantothenoylcysteine decarboxylase OS=Homo sapiens GN=PPCDC PE=1 SV=2 Back     alignment and function description
>sp|Q9UTI7|TYSY_SCHPO Probable thymidylate synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC15E1.04 PE=3 SV=1 Back     alignment and function description
>sp|Q54Y51|COAC_DICDI Putative phosphopantothenoylcysteine decarboxylase OS=Dictyostelium discoideum GN=ppcdc PE=3 SV=1 Back     alignment and function description
>sp|P36076|CAB3_YEAST Coenzyme A biosynthesis protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAB3 PE=1 SV=1 Back     alignment and function description
>sp|Q08438|VHS3_YEAST Phosphopantothenoylcysteine decarboxylase subunit VHS3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VHS3 PE=1 SV=1 Back     alignment and function description
>sp|P36024|SIS2_YEAST Phosphopantothenoylcysteine decarboxylase subunit SIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SIS2 PE=1 SV=1 Back     alignment and function description
>sp|Q12600|SIS2_CANTR Protein SIS2 OS=Candida tropicalis GN=SIS2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
255570655212 phosphopentothenoylcysteine decarboxylas 1.0 1.0 0.896 1e-111
118483279217 unknown [Populus trichocarpa] 1.0 0.976 0.861 1e-105
224133816207 predicted protein [Populus trichocarpa] 0.915 0.937 0.917 1e-103
357514735212 Phosphopantothenoylcysteine decarboxylas 0.995 0.995 0.830 1e-100
351724523211 uncharacterized protein LOC100499989 [Gl 0.995 1.0 0.815 1e-100
449469602212 PREDICTED: phosphopantothenoylcysteine d 0.971 0.971 0.834 1e-100
388518215213 unknown [Medicago truncatula] 0.995 0.990 0.820 1e-99
359807604214 uncharacterized protein LOC100778368 [Gl 0.995 0.985 0.810 2e-99
225456777214 PREDICTED: phosphopantothenoylcysteine d 0.995 0.985 0.796 2e-97
225456779213 PREDICTED: phosphopantothenoylcysteine d 0.995 0.990 0.796 2e-97
>gi|255570655|ref|XP_002526282.1| phosphopentothenoylcysteine decarboxylase, putative [Ricinus communis] gi|223534363|gb|EEF36071.1| phosphopentothenoylcysteine decarboxylase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/212 (89%), Positives = 201/212 (94%)

Query: 1   MAYSEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSL 60
           MAYSE  + +RE MQVN   RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATK+SL
Sbjct: 1   MAYSESATAEREPMQVNASPRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKASL 60

Query: 61  HFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGL 120
           HFIDRA+LPKDV+ YTDEDEW++WNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGL
Sbjct: 61  HFIDRASLPKDVVLYTDEDEWSSWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGL 120

Query: 121 CDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGD 180
           CDNLLTC+VRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPV+KRLACGD
Sbjct: 121 CDNLLTCVVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKRLACGD 180

Query: 181 YGNGAMAEPSLIYSTVRLFAESRNQSGDGKVG 212
           YGNGAMAEPSLIYST+RLF ESR Q GDG+VG
Sbjct: 181 YGNGAMAEPSLIYSTIRLFLESRPQPGDGRVG 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118483279|gb|ABK93542.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224133816|ref|XP_002321668.1| predicted protein [Populus trichocarpa] gi|222868664|gb|EEF05795.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357514735|ref|XP_003627656.1| Phosphopantothenoylcysteine decarboxylase [Medicago truncatula] gi|355521678|gb|AET02132.1| Phosphopantothenoylcysteine decarboxylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|351724523|ref|NP_001235269.1| uncharacterized protein LOC100499989 [Glycine max] gi|255628357|gb|ACU14523.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449469602|ref|XP_004152508.1| PREDICTED: phosphopantothenoylcysteine decarboxylase-like [Cucumis sativus] gi|449487722|ref|XP_004157768.1| PREDICTED: phosphopantothenoylcysteine decarboxylase-like [Cucumis sativus] gi|307136125|gb|ADN33971.1| phosphopentothenoylcysteine decarboxylase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|388518215|gb|AFK47169.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|359807604|ref|NP_001240905.1| uncharacterized protein LOC100778368 [Glycine max] gi|255636754|gb|ACU18711.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225456777|ref|XP_002276829.1| PREDICTED: phosphopantothenoylcysteine decarboxylase-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456779|ref|XP_002276875.1| PREDICTED: phosphopantothenoylcysteine decarboxylase-like isoform 2 [Vitis vinifera] gi|225456781|ref|XP_002276901.1| PREDICTED: phosphopantothenoylcysteine decarboxylase-like isoform 3 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query212
TAIR|locus:2087669209 HAL3A "HAL3-like protein A" [A 0.933 0.947 0.825 9.3e-91
TAIR|locus:1006230763201 ATHAL3B [Arabidopsis thaliana 0.924 0.975 0.802 2e-86
ZFIN|ZDB-GENE-040426-1749231 ppcdc "phosphopantothenoylcyst 0.858 0.787 0.529 6.2e-46
MGI|MGI:1914062204 Ppcdc "phosphopantothenoylcyst 0.825 0.857 0.502 2.8e-43
RGD|1306267204 Ppcdc "phosphopantothenoylcyst 0.825 0.857 0.502 2.8e-43
UNIPROTKB|D3ZZZ5242 Ppcdc "Protein Ppcdc" [Rattus 0.825 0.723 0.502 2.8e-43
UNIPROTKB|E1BUI2204 PPCDC "Uncharacterized protein 0.849 0.882 0.494 4.5e-43
UNIPROTKB|Q58DB8230 MDS018 "Putative uncharacteriz 0.886 0.817 0.471 4.5e-43
UNIPROTKB|I3LFK1220 PPCDC "Uncharacterized protein 0.825 0.795 0.491 3.2e-42
FB|FBgn0050290191 Ppcdc "Phosphopantothenoylcyst 0.839 0.931 0.462 5.2e-42
TAIR|locus:2087669 HAL3A "HAL3-like protein A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
 Identities = 165/200 (82%), Positives = 185/200 (92%)

Query:    10 DREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALP 69
             DR+ M+VNT  RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP
Sbjct:     7 DRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLP 66

Query:    70 KDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV 129
             ++V  YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+
Sbjct:    67 QEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCII 126

Query:   130 RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEP 189
             RAWDY KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLACGDYGNGAMAEP
Sbjct:   127 RAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEP 186

Query:   190 SLIYSTVRLFAESR--NQSG 207
             SLIYSTVRLF ES+   Q+G
Sbjct:   187 SLIYSTVRLFWESQAHQQTG 206
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0042538 "hyperosmotic salinity response" evidence=IEP;IMP
GO:0010181 "FMN binding" evidence=ISS
GO:0004633 "phosphopantothenoylcysteine decarboxylase activity" evidence=IDA;TAS
GO:0015937 "coenzyme A biosynthetic process" evidence=TAS
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:1006230763 ATHAL3B [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1749 ppcdc "phosphopantothenoylcysteine decarboxylase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1914062 Ppcdc "phosphopantothenoylcysteine decarboxylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306267 Ppcdc "phosphopantothenoylcysteine decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|D3ZZZ5 Ppcdc "Protein Ppcdc" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BUI2 PPCDC "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DB8 MDS018 "Putative uncharacterized protein MDS018" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LFK1 PPCDC "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0050290 Ppcdc "Phosphopantothenoylcysteine decarboxylase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96CD2COAC_HUMAN4, ., 1, ., 1, ., 3, 60.47360.86790.9019yesno
Q9SWE5HAL3A_ARATH4, ., 1, ., 1, ., 3, 60.820.94330.9569yesno
Q8BZB2COAC_MOUSE4, ., 1, ., 1, ., 3, 60.50270.82540.8578yesno
Q54Y51COAC_DICDI4, ., 1, ., 1, ., 3, 60.42620.83010.8934yesno
P94063HAL3B_ARATH4, ., 1, ., 1, ., 3, 60.82100.89620.9452nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.1.360.979
3rd Layer4.1.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XV.1934.1
SubName- Full=Putative uncharacterized protein; (185 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00570163
4-phosphopantetheine adenylyltransferase (EC-2.7.7.3) (178 aa)
     •• 0.946
estExt_Genewise1_v1.C_LG_II1144
hypothetical protein (328 aa)
     •• 0.935
estExt_fgenesh4_pg.C_LG_XV0519
pantothenate kinase (EC-2.7.1.33) (872 aa)
     •• 0.919
eugene3.00120751
pantothenate kinase (EC-2.7.1.33) (939 aa)
     •• 0.918
fgenesh4_pm.C_LG_X000827
dephospho-CoA kinase (EC-2.7.1.24) (232 aa)
     •• 0.485

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
PLN02496209 PLN02496, PLN02496, probable phosphopantothenoylcy 1e-153
PRK05579 399 PRK05579, PRK05579, bifunctional phosphopantotheno 2e-50
PRK07313182 PRK07313, PRK07313, phosphopantothenoylcysteine de 2e-47
pfam02441132 pfam02441, Flavoprotein, Flavoprotein 2e-42
TIGR00521 390 TIGR00521, coaBC_dfp, phosphopantothenoylcysteine 2e-36
COG0452 392 COG0452, Dfp, Phosphopantothenoylcysteine syntheta 3e-35
TIGR02113177 TIGR02113, coaC_strep, phosphopantothenoylcysteine 3e-35
PRK13982 475 PRK13982, PRK13982, bifunctional SbtC-like/phospho 2e-26
PRK06029185 PRK06029, PRK06029, 3-octaprenyl-4-hydroxybenzoate 3e-06
PRK05920204 PRK05920, PRK05920, aromatic acid decarboxylase; V 2e-05
COG0163191 COG0163, UbiX, 3-polyprenyl-4-hydroxybenzoate deca 3e-05
TIGR00421181 TIGR00421, ubiX_pad, polyprenyl P-hydroxybenzoate 0.001
PRK08305196 PRK08305, spoVFB, dipicolinate synthase subunit B; 0.004
>gnl|CDD|215274 PLN02496, PLN02496, probable phosphopantothenoylcysteine decarboxylase Back     alignment and domain information 
 Score =  422 bits (1086), Expect = e-153
 Identities = 184/209 (88%), Positives = 195/209 (93%)

Query: 4   SEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFI 63
           +EP S + +AM+VNT  RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAV TK+SLHFI
Sbjct: 1   AEPLSPEVDAMEVNTAPRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVVTKASLHFI 60

Query: 64  DRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDN 123
           DRA+LPKDV  YTDEDEW++WNKIGDSVLHIELRRWAD+MVIAPLSANTLGKIAGGLCDN
Sbjct: 61  DRASLPKDVTLYTDEDEWSSWNKIGDSVLHIELRRWADVMVIAPLSANTLGKIAGGLCDN 120

Query: 124 LLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGN 183
           LLTCIVRAWDY+KPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPV+KRLACGDYGN
Sbjct: 121 LLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKRLACGDYGN 180

Query: 184 GAMAEPSLIYSTVRLFAESRNQSGDGKVG 212
           GAMAEPSLIYSTVRLF ESR QS  G V 
Sbjct: 181 GAMAEPSLIYSTVRLFLESRAQSQSGGVS 209

Length = 209
>gnl|CDD|235513 PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated Back     alignment and domain information
>gnl|CDD|235986 PRK07313, PRK07313, phosphopantothenoylcysteine decarboxylase; Validated Back     alignment and domain information
>gnl|CDD|217035 pfam02441, Flavoprotein, Flavoprotein Back     alignment and domain information
>gnl|CDD|233006 TIGR00521, coaBC_dfp, phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase Back     alignment and domain information
>gnl|CDD|223529 COG0452, Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|131168 TIGR02113, coaC_strep, phosphopantothenoylcysteine decarboxylase, streptococcal Back     alignment and domain information
>gnl|CDD|172484 PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional Back     alignment and domain information
>gnl|CDD|235677 PRK06029, PRK06029, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional Back     alignment and domain information
>gnl|CDD|180312 PRK05920, PRK05920, aromatic acid decarboxylase; Validated Back     alignment and domain information
>gnl|CDD|223241 COG0163, UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|129515 TIGR00421, ubiX_pad, polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases Back     alignment and domain information
>gnl|CDD|181370 PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 212
PLN02496209 probable phosphopantothenoylcysteine decarboxylase 100.0
PRK07313182 phosphopantothenoylcysteine decarboxylase; Validat 100.0
TIGR02113177 coaC_strep phosphopantothenoylcysteine decarboxyla 100.0
KOG0672218 consensus Halotolerance protein HAL3 (contains fla 100.0
PRK05579 399 bifunctional phosphopantothenoylcysteine decarboxy 100.0
PRK13982 475 bifunctional SbtC-like/phosphopantothenoylcysteine 100.0
TIGR00521 390 coaBC_dfp phosphopantothenoylcysteine decarboxylas 100.0
PRK08305196 spoVFB dipicolinate synthase subunit B; Reviewed 100.0
PRK05920204 aromatic acid decarboxylase; Validated 100.0
PRK06029185 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Prov 100.0
COG0452 392 Dfp Phosphopantothenoylcysteine synthetase/decarbo 100.0
TIGR00421181 ubiX_pad polyprenyl P-hydroxybenzoate and phenylac 100.0
TIGR02852187 spore_dpaB dipicolinic acid synthetase, B subunit. 100.0
PF02441129 Flavoprotein: Flavoprotein; InterPro: IPR003382 Th 100.0
COG0163191 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase 99.97
TIGR02699174 archaeo_AfpA archaeoflavoprotein AfpA. The prototy 99.96
TIGR02700234 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. T 99.91
COG1036187 Archaeal flavoproteins [Energy production and conv 99.8
TIGR02536207 eut_hyp ethanolamine utilization protein. This fam 98.3
PF06258311 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP 87.94
PF03033139 Glyco_transf_28: Glycosyltransferase family 28 N-t 83.99
cd01075200 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l 81.27
>PLN02496 probable phosphopantothenoylcysteine decarboxylase Back     alignment and domain information 
Probab=100.00  E-value=1.4e-59  Score=392.84  Aligned_cols=207  Identities=89%  Similarity=1.424  Sum_probs=193.8

Q ss_pred             CCCCcchhhhhhccCCCCCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEecccHHHHhccccCCCCCeeEecccccccc
Q 028187            5 EPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATW   84 (212)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~~   84 (212)
                      ||-|-.-++|-++.+.+++||++|+|||+++||++++++.|++|++|+|+||++|.+|++++.|....++|+|.++|+.|
T Consensus         2 ~~~~~~~~~~~~~~~~~~k~IllgVtGSIAAyk~~~lvr~L~~g~~V~VvmT~~A~~FI~p~~l~~~~~v~td~~~~~~~   81 (209)
T PLN02496          2 EPLSPEVDAMEVNTAPRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVVTKASLHFIDRASLPKDVTLYTDEDEWSSW   81 (209)
T ss_pred             CCcCCCccchhhccCCCCCEEEEEEeCHHHHHHHHHHHHHhcCCCeEEEEEChhHhhhcCHHHcCCCCcEEeCccccccc
Confidence            56666778899999999999999999999999999999999888999999999999999999987545789998888777


Q ss_pred             ccCCCccccccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHC
Q 028187           85 NKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDEL  164 (212)
Q Consensus        85 ~~~~~~~~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~  164 (212)
                      +..+.+.+|++|.+|||+|||+|||+|||||+|+|||||++++++++++.++|++++|+||+.||+||++|+||++|+++
T Consensus        82 ~~~~~~~~HI~La~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~  161 (209)
T PLN02496         82 NKIGDSVLHIELRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDEL  161 (209)
T ss_pred             ccCCCCcchhHhhhhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHC
Confidence            66667889999999999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             CCEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhhcCCCCCCCCCC
Q 028187          165 GISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKV  211 (212)
Q Consensus       165 G~~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~~~l~~~~~~  211 (212)
                      |++|++|..|.++||++|.|||+++++|++.+..+++.+++++++-|
T Consensus       162 G~~vi~P~~g~lAcg~~G~Grm~ep~~I~~~i~~~l~~~~~~~~~~~  208 (209)
T PLN02496        162 GISLIPPVTKRLACGDYGNGAMAEPSLIYSTVRLFLESRAQSQSGGV  208 (209)
T ss_pred             CCEEECCCcCcccCCCcCCCCCCCHHHHHHHHHHHHhhccccccCCC
Confidence            99999999999999999999999999999999999999999998865

>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated Back     alignment and domain information
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal Back     alignment and domain information
>KOG0672 consensus Halotolerance protein HAL3 (contains flavoprotein domain) [Inorganic ion transport and metabolism; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated Back     alignment and domain information
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional Back     alignment and domain information
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic Back     alignment and domain information
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed Back     alignment and domain information
>PRK05920 aromatic acid decarboxylase; Validated Back     alignment and domain information
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional Back     alignment and domain information
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases Back     alignment and domain information
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit Back     alignment and domain information
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN [] Back     alignment and domain information
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA Back     alignment and domain information
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family Back     alignment and domain information
>COG1036 Archaeal flavoproteins [Energy production and conversion] Back     alignment and domain information
>TIGR02536 eut_hyp ethanolamine utilization protein Back     alignment and domain information
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins Back     alignment and domain information
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
1e20_A209 The Fmn Binding Protein Athal3 Length = 209 1e-100
1mvl_A209 Ppc Decarboxylase Mutant C175s Length = 209 5e-99
1qzu_A206 Crystal Structure Of Human Phosphopantothenoylcyste 5e-44
3qjg_A175 Epidermin Biosynthesis Protein Epid From Staphyloco 2e-13
1g63_A181 Peptidyl-Cysteine Decarboxylase Epid Length = 181 9e-13
1p3y_1194 Mrsd From Bacillus Sp. Hil-y85/54728 Length = 194 2e-12
1g5q_A181 Epid H67n Complexed With Substrate Peptide Dsytc Le 7e-12
>pdb|1E20|A Chain A, The Fmn Binding Protein Athal3 Length = 209 Back     alignment and structure 
Iteration: 1

 Score =  359 bits (922), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 164/200 (82%), Positives = 183/200 (91%)
Query: 10  DREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALP 69
           DR+ M+VNT  RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP
Sbjct: 7   DRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLP 66
Query: 70  KDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV 129
           ++V  YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+
Sbjct: 67  QEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCII 126
Query: 130 RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEP 189
           RAWDY KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLACGDYGNGAMAEP
Sbjct: 127 RAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEP 186
Query: 190 SLIYSTVRLFAESRNQSGDG 209
           SLIYSTVRLF ES+     G
Sbjct: 187 SLIYSTVRLFWESQAHQQTG 206
>pdb|1MVL|A Chain A, Ppc Decarboxylase Mutant C175s Length = 209 Back     alignment and structure
>pdb|1QZU|A Chain A, Crystal Structure Of Human Phosphopantothenoylcysteine Decarboxylase Length = 206 Back     alignment and structure
>pdb|3QJG|A Chain A, Epidermin Biosynthesis Protein Epid From Staphylococcus Aureus Length = 175 Back     alignment and structure
>pdb|1G63|A Chain A, Peptidyl-Cysteine Decarboxylase Epid Length = 181 Back     alignment and structure
>pdb|1P3Y|1 Chain 1, Mrsd From Bacillus Sp. Hil-y85/54728 Length = 194 Back     alignment and structure
>pdb|1G5Q|A Chain A, Epid H67n Complexed With Substrate Peptide Dsytc Length = 181 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query212
1mvl_A209 PPC decarboxylase athal3A; flavoprotein, active si 1e-95
1qzu_A206 Hypothetical protein MDS018; alpha-beta sandwich, 5e-78
1p3y_1194 MRSD protein; flavoprotein, FMN, rossmann fold, HF 3e-49
3qjg_A175 Epidermin biosynthesis protein EPID; structural ge 2e-47
1g63_A181 Epidermin modifying enzyme EPID; alpha, beta prote 1e-46
3lqk_A201 Dipicolinate synthase subunit B; flavoprotein, PSI 1e-33
3mcu_A207 Dipicolinate synthase, B chain; NESG, structural g 1e-31
2ejb_A189 Probable aromatic acid decarboxylase; phenylacryli 6e-20
3zqu_A209 Probable aromatic acid decarboxylase; lyase; HET: 4e-15
1sbz_A197 Probable aromatic acid decarboxylase; FMN binding, 4e-13
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A* Length = 209 Back     alignment and structure
 Score =  276 bits (708), Expect = 1e-95
 Identities = 162/199 (81%), Positives = 181/199 (90%)

Query: 7   TSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRA 66
              DR+ M+VNT  RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ 
Sbjct: 4   GKRDRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKL 63

Query: 67  ALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLT 126
           +LP++V  YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLT
Sbjct: 64  SLPQEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLT 123

Query: 127 CIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAM 186
           CI+RAWDY KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLA GDYGNGAM
Sbjct: 124 CIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLASGDYGNGAM 183

Query: 187 AEPSLIYSTVRLFAESRNQ 205
           AEPSLIYSTVRLF ES+  
Sbjct: 184 AEPSLIYSTVRLFWESQAH 202
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1 Length = 206 Back     alignment and structure
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1 Length = 194 Back     alignment and structure
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} Length = 175 Back     alignment and structure
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A* Length = 181 Back     alignment and structure
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans} Length = 201 Back     alignment and structure
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus} Length = 207 Back     alignment and structure
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus} Length = 189 Back     alignment and structure
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} Length = 209 Back     alignment and structure
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1 Length = 197 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
1mvl_A209 PPC decarboxylase athal3A; flavoprotein, active si 100.0
1qzu_A206 Hypothetical protein MDS018; alpha-beta sandwich, 100.0
1p3y_1194 MRSD protein; flavoprotein, FMN, rossmann fold, HF 100.0
1g63_A181 Epidermin modifying enzyme EPID; alpha, beta prote 100.0
3qjg_A175 Epidermin biosynthesis protein EPID; structural ge 100.0
3mcu_A207 Dipicolinate synthase, B chain; NESG, structural g 100.0
3lqk_A201 Dipicolinate synthase subunit B; flavoprotein, PSI 100.0
3zqu_A209 Probable aromatic acid decarboxylase; lyase; HET: 100.0
2ejb_A189 Probable aromatic acid decarboxylase; phenylacryli 100.0
1sbz_A197 Probable aromatic acid decarboxylase; FMN binding, 100.0
2o6l_A170 UDP-glucuronosyltransferase 2B7; drug metabolism, 91.59
3e8x_A236 Putative NAD-dependent epimerase/dehydratase; stru 84.88
3tsa_A391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 81.43
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A* Back     alignment and structure
Probab=100.00  E-value=3.6e-60  Score=397.08  Aligned_cols=205  Identities=79%  Similarity=1.313  Sum_probs=164.6

Q ss_pred             CCCCcchhhhhhccCCCCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCCCCCeeEeccccccc
Q 028187            5 EPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWAT   83 (212)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~   83 (212)
                      ++++.++++|.-...++++||+||+|||+++||++++++.|++ | +|+||+|++|.+|++++.++++.++|+|.++|..
T Consensus         2 ~~~~~~~~~~~~~~~l~~k~IllgvTGsiaa~k~~~ll~~L~~~g-~V~vv~T~~A~~fv~~~~~~~~~~v~~d~~~~~~   80 (209)
T 1mvl_A            2 ENGKRDRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWA-EVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSS   80 (209)
T ss_dssp             -----------------CCEEEEEECSSGGGGGHHHHHHHHHTTS-EEEEEECTGGGGTCCGGGSCTTCEEECTTHHHHH
T ss_pred             CCCccchhhcccccccCCCEEEEEEeCcHHHHHHHHHHHHHhcCC-CEEEEEcchHHHhcCHHHhhcCCeEEeCcccccc
Confidence            4556678888888888899999999999999999999999986 8 9999999999999999999877889999877877


Q ss_pred             cccCCCccccccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHH
Q 028187           84 WNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDE  163 (212)
Q Consensus        84 ~~~~~~~~~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~  163 (212)
                      |.+.++++.|+++.+|+|+|||||||+|||||||+||||||++++++|++.++|++++|+||+.||+||++|+||++|++
T Consensus        81 ~~~~~~~i~hi~l~~~aD~mvIaPaTanTlAKiA~GiaDnLlt~~~~A~d~~~pvvlaPaMN~~M~e~P~t~~nl~~L~~  160 (209)
T 1mvl_A           81 WNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDE  160 (209)
T ss_dssp             CSSTTSCCHHHHHHHHCSEEEEEEECHHHHHHHHHTCCSSHHHHHHHTCCTTSCEEEEECCCHHHHHSHHHHHHHHHHHH
T ss_pred             ccccCCCccchhhcccCCEEEEecCCHHHHHHHHccccCcHHHHHHHHhcCCCCEEEEECCChhHhhChhHHHHHHHHHH
Confidence            76667789999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             CCCEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhhcCCCCCCCCC
Q 028187          164 LGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGK  210 (212)
Q Consensus       164 ~G~~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~~~l~~~~~  210 (212)
                      +|++|+||..|+++||+.|+|+|+++|+|++++..++..++|+||+-
T Consensus       161 ~G~~ivpP~~g~lacg~~G~gr~~~~~~Iv~~v~~~l~~~~l~~~~~  207 (209)
T 1mvl_A          161 LGITLIPPIKKRLASGDYGNGAMAEPSLIYSTVRLFWESQAHQQTGG  207 (209)
T ss_dssp             HTCEECCCBC---------CCBCCCHHHHHHHHHHHHHHC-------
T ss_pred             CCCEEeCCccccccCCCcCCCCCCCHHHHHHHHHHHhCCCccCCCCC
Confidence            99999999999999999999999999999999999999999999964
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1 Back     alignment and structure
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1 Back     alignment and structure
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A* Back     alignment and structure
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0 Back     alignment and structure
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus} Back     alignment and structure
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans} Back     alignment and structure
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0 Back     alignment and structure
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus} Back     alignment and structure
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1 Back     alignment and structure
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Back     alignment and structure
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 212
d1mvla_182 c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decar 5e-56
d1qzua_181 c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decar 1e-49
d1p3y1_183 c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [Ta 2e-34
d1sbza_186 c.34.1.1 (A:) Probable aromatic acid decarboxylase 4e-29
d1g5qa_174 c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl 2e-27
>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 182 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  174 bits (441), Expect = 5e-56
 Identities = 155/182 (85%), Positives = 172/182 (94%)

Query: 22  KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEW 81
           KPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP++V  YTDEDEW
Sbjct: 1   KPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEW 60

Query: 82  ATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVA 141
           ++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+RAWDY KPLFVA
Sbjct: 61  SSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVA 120

Query: 142 PAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAE 201
           PAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLA GDYGNGAMAEPSLIYSTVRLF E
Sbjct: 121 PAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLASGDYGNGAMAEPSLIYSTVRLFWE 180

Query: 202 SR 203
           S+
Sbjct: 181 SQ 182
>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Human (Homo sapiens) [TaxId: 9606]} Length = 181 Back     information, alignment and structure
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} Length = 183 Back     information, alignment and structure
>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1 {Escherichia coli O157:H7 [TaxId: 83334]} Length = 186 Back     information, alignment and structure
>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]} Length = 174 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query212
d1mvla_182 4'-phosphopantothenoylcysteine decarboxylase (PPC 100.0
d1qzua_181 4'-phosphopantothenoylcysteine decarboxylase (PPC 100.0
d1p3y1_183 MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} 100.0
d1g5qa_174 Epidermin modifying enzyme (peptidyl-cysteine deca 100.0
d1sbza_186 Probable aromatic acid decarboxylase Pad1 {Escheri 100.0
d1pn3a_ 391 TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi 83.86
d1vl2a1168 Argininosuccinate synthetase, N-terminal domain {T 83.73
d1rrva_ 401 TDP-vancosaminyltransferase GftD {Amycolatopsis or 82.0
d1k92a1188 Argininosuccinate synthetase, N-terminal domain {E 80.17
>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.5e-59  Score=382.48  Aligned_cols=182  Identities=85%  Similarity=1.452  Sum_probs=161.2

Q ss_pred             CCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEecccHHHHhccccCCCCCeeEeccccccccccCCCcccccccccccc
Q 028187           22 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWAD  101 (212)
Q Consensus        22 ~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~~~~~~~~~~h~~l~~~aD  101 (212)
                      |+||++|+|||+++||+++|++.|++|++|+|++|++|.+||++..++.....+.+.+.|..+++.+.+.+|+++++|+|
T Consensus         1 k~kIllgvtGsiAayk~~~L~r~L~~~~~V~vv~T~~A~~fi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Hi~la~~aD   80 (182)
T d1mvla_           1 KPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPVLHIELRRWAD   80 (182)
T ss_dssp             CCEEEEEECSSGGGGGHHHHHHHHHTTSEEEEEECTGGGGTCCGGGSCTTCEEECTTHHHHHCSSTTSCCHHHHHHHHCS
T ss_pred             CCEEEEEEecHHHHHHHHHHHHHHhcCCeEEEEEchhHHHhhhhhhhceeeeeeecccccccccccCCchhhhhhhcccc
Confidence            57999999999999999999999988999999999999999999999865566667777877777777789999999999


Q ss_pred             EEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccCCC
Q 028187          102 IMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDY  181 (212)
Q Consensus       102 ~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~la~g~~  181 (212)
                      +|||+|||+|||||+|+||||||+++++++++.++|++++|+||+.||+||++|+||++|+++|++|++|+.|.++||++
T Consensus        81 ~~iVaPATANtiaK~A~GiaD~llt~~~la~~~~kPv~iaPaMn~~Mw~~p~t~~Nl~~L~~~G~~vi~P~~G~lacg~~  160 (182)
T d1mvla_          81 VLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLASGDY  160 (182)
T ss_dssp             EEEEEEECHHHHHHHHHTCCSSHHHHHHHTCCTTSCEEEEECCCHHHHHSHHHHHHHHHHHHHTCEECCCBC--------
T ss_pred             EEEEEeccHHHHHHHHcCCcchhhHHHHHhccCCCCEEEEecccHHHHhhHHHHHHHHHHhccCCEEECCCcceecCCCc
Confidence            99999999999999999999999999999988789999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhhcCC
Q 028187          182 GNGAMAEPSLIYSTVRLFAESR  203 (212)
Q Consensus       182 g~g~~~~~~~i~~~v~~~~~~~  203 (212)
                      |.|||++|++|+++++.+++.|
T Consensus       161 G~Gr~~ep~~I~~~i~~~~~~~  182 (182)
T d1mvla_         161 GNGAMAEPSLIYSTVRLFWESQ  182 (182)
T ss_dssp             -CCBCCCHHHHHHHHHHHHHHC
T ss_pred             cccCCCCHHHHHHHHHHHhhcC
Confidence            9999999999999999888643
>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} Back     information, alignment and structure
>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1 {Escherichia coli O157:H7 [TaxId: 83334]} Back     information, alignment and structure
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure