Citrus Sinensis ID: 028199

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MAYSEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKVG
Secondary Structure (PSIPRED)
ccccccccccHHHHHHccccccccEEEEEEHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEccccHHHHHHHHHcHHcHHHHHHHHcccccccEEEEccccHHHHHcHHHHHHHHHHHHcccEEEcccccccccccccccccccHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHcccEEEEEEcccHHHHccHHHcccccEEEcccHHHHHccccccccHHHHHHHHccEEEEEEEcHHHHHHHHccccccHHHHHHHcccccccEEEEEcccHHHHHcHHHHHHHHHHHHHccEEcccEccccccccccccEcccHHHHHHHHHHHHHHcHHccccccc
Coil and Loop (DISEMBL)
mayseptstdrEAMQVNTGLRKPRILLAAsgsvaaikfgnlCHCFSEWAEVRAVATKSSlhfidraalpkdvifytdedewatwnkigdSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAwdynkplfvapamntfmwnnpfterhLMSIDElgislippvskrlacgdygngamaepsLIYSTVRLFAEsrnqsgdgkvg
Flexible Loop (DISEMBL)
mayseptstdreamQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSlhfidraalpkdVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAEsrnqsgdgkvg
Low Complexity Region (SEG)
MAYSEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKVG
Disordered region (IsUnstruct)
********************RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLF*************
Disordered Region (DISOPRED)
***********************RILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESR**S******
Disordered Region (DISEMBL)
**************QVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAES**********
Disordered Region (DISPRO)
*******************LRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAYSEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q9SWE5	209	Phosphopantothenoylcystei	yes	no	0.943	0.956	0.82	6e-99
P94063	201	Probable phosphopantothen	no	no	0.896	0.945	0.821	9e-94
Q8BZB2	204	Phosphopantothenoylcystei	yes	no	0.825	0.857	0.502	8e-46
Q96CD2	204	Phosphopantothenoylcystei	yes	no	0.867	0.901	0.473	8e-43
Q9UTI7	625	Probable thymidylate synt	yes	no	0.787	0.267	0.465	2e-37
Q54Y51	197	Putative phosphopantothen	yes	no	0.830	0.893	0.426	2e-36
P36076	571	Coenzyme A biosynthesis p	yes	no	0.971	0.360	0.381	4e-33
Q08438	674	Phosphopantothenoylcystei	no	no	0.608	0.191	0.462	3e-28
P36024	562	Phosphopantothenoylcystei	no	no	0.570	0.215	0.475	8e-28
Q12600	531	Protein SIS2 OS=Candida t	N/A	no	0.778	0.310	0.398	1e-26

>sp|Q9SWE5|HAL3A_ARATH Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3A PE=1 SV=1

 Score =  359 bits (922), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 164/200 (82%), Positives = 183/200 (91%)

Query: 10  DREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALP 69
           DR+ M+VNT  RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP
Sbjct: 7   DRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLP 66

Query: 70  KDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV 129
           ++V  YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+
Sbjct: 67  QEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCII 126

Query: 130 RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEP 189
           RAWDY KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLACGDYGNGAMAEP
Sbjct: 127 RAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEP 186

Query: 190 SLIYSTVRLFAESRNQSGDG 209
           SLIYSTVRLF ES+     G
Sbjct: 187 SLIYSTVRLFWESQAHQQTG 206

Involved in plant growth and salt and osmotic tolerance. Catalyzes the decarboxylation of 4'-phosphopantothenoylcysteine to 4'-phosphopantetheine, a key step in coenzyme A biosynthesis. The enzyme is also able to decarboxylate pantothenoylcysteine to pantothenoylcysteamine.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 6

>sp|P94063|HAL3B_ARATH Probable phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3B PE=2 SV=2

 Score =  342 bits (878), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 156/190 (82%), Positives = 178/190 (93%)

Query: 14  MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVI 73
           M+V+T  RKPRILLAASGSVA+IKF NLCHCFSEWAEV+AVA+KSSL+F+D+ +LP++V 
Sbjct: 3   MEVDTVTRKPRILLAASGSVASIKFSNLCHCFSEWAEVKAVASKSSLNFVDKPSLPQNVT 62

Query: 74  FYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 133
            YTDEDEW++WNKIGD VLHIELRRWAD+M+IAPLSANTL KIAGGLCDNLLTCIVRAWD
Sbjct: 63  LYTDEDEWSSWNKIGDPVLHIELRRWADVMIIAPLSANTLAKIAGGLCDNLLTCIVRAWD 122

Query: 134 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIY 193
           Y+KPLFVAPAMNT MWNNPFTERHL+ +DELGI+LIPP+ K+LACGDYGNGAMAEPSLIY
Sbjct: 123 YSKPLFVAPAMNTLMWNNPFTERHLVLLDELGITLIPPIKKKLACGDYGNGAMAEPSLIY 182

Query: 194 STVRLFAESR 203
           STVRLF ES+
Sbjct: 183 STVRLFWESQ 192

Involved in plant growth and salt and osmotic tolerance. Catalyzes the decarboxylation of 4'-phosphopantothenoylcysteine to 4'-phosphopantetheine, a key step in coenzyme A biosynthesis. The enzyme is also able to decarboxylate pantothenoylcysteine to pantothenoylcysteamine.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q8BZB2|COAC_MOUSE Phosphopantothenoylcysteine decarboxylase OS=Mus musculus GN=Ppcdc PE=2 SV=1

 Score =  183 bits (464), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 90/179 (50%), Positives = 115/179 (64%), Gaps = 4/179 (2%)

Query: 21  RKPRILLAASGSVAAIKFGNLCHCFSEWA--EVRAVATKSSLHFIDRAALPKDVIFYTDE 78
           RK R+L+  +GSVAA+K   L     +    EV  V T+ + HF     +P  V  Y+D 
Sbjct: 16  RKFRVLVGVTGSVAALKLPLLVSKLLDVPGLEVTVVTTERAKHFYSPQDVP--VTLYSDA 73

Query: 79  DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
           DEW  W +  D VLHI+LRRWAD+M++APL ANTLGK+A G+CDNLLTC++RAWD NKPL
Sbjct: 74  DEWEMWKRRSDPVLHIDLRRWADLMLVAPLDANTLGKVASGICDNLLTCVIRAWDLNKPL 133

Query: 139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 197
              PAMNT MW +P T + +  +   G   IP VSK+L CGD G GAMAE   I + V+
Sbjct: 134 LFCPAMNTAMWEHPLTAQQVAQLKAFGYVEIPCVSKKLVCGDQGLGAMAEVETIVAKVQ 192

Necessary for the biosynthesis of coenzyme A. Catalyzes the decarboxylation of 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q96CD2|COAC_HUMAN Phosphopantothenoylcysteine decarboxylase OS=Homo sapiens GN=PPCDC PE=1 SV=2

 Score =  173 bits (438), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 116/190 (61%), Gaps = 6/190 (3%)

Query: 21  RKPRILLAASGSVAAIKFGNLCHCFSEWA--EVRAVATKSSLHFIDRAALPKDVIFYTDE 78
           RK  +L+  +GSVAA+K   L     +    EV  V T+ + HF     +P  V  Y+D 
Sbjct: 16  RKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDIP--VTLYSDA 73

Query: 79  DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
           DEW  W    D VLHI+LRRWAD++++APL ANTLGK+A G+CDNLLTC++RAWD +KPL
Sbjct: 74  DEWEIWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPL 133

Query: 139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR- 197
              PAMNT MW +P T + +  +   G   IP V+K+L CGD G GAMAE   I   V+ 
Sbjct: 134 LFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVKE 193

Query: 198 -LFAESRNQS 206
            LF  S  Q 
Sbjct: 194 VLFQHSGFQQ 203

Necessary for the biosynthesis of coenzyme A. Catalyzes the decarboxylation of 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q9UTI7|TYSY_SCHPO Probable thymidylate synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC15E1.04 PE=3 SV=1

 Score =  155 bits (391), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 109/172 (63%), Gaps = 5/172 (2%)

Query: 22  KPRILLAASGSVAAIKFGNLCHCFSEW--AEVRAVATKSSLHFIDRAALPK-DVIFYTDE 78
           K  IL+AA+GSVAAIK   +      +   +V+ V T  + +F+++  L    V  Y + 
Sbjct: 30  KYHILVAATGSVAAIKLTLIVKSLLTYKGVDVQVVLTDPARNFVEKEDLTALGVNVYNNA 89

Query: 79  DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
           D+W  W+ +   + HIELRRWA +++IAPLSANT+ K+A GLCDNLLT ++RAW   KP+
Sbjct: 90  DDWKNWDGLECPITHIELRRWAHLLLIAPLSANTMAKMANGLCDNLLTSLIRAWAPLKPI 149

Query: 139 FVAPAMNTFMWNNPFTERHLMSIDEL--GISLIPPVSKRLACGDYGNGAMAE 188
            +APAMNT MW NP T+ HL +I  +      I P+ K LACGD G G MAE
Sbjct: 150 LLAPAMNTLMWTNPITQEHLSAISRIYKNSEFIMPIEKVLACGDIGMGGMAE 201

Required for both nuclear and mitochondrial DNA synthesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 5

>sp|Q54Y51|COAC_DICDI Putative phosphopantothenoylcysteine decarboxylase OS=Dictyostelium discoideum GN=ppcdc PE=3 SV=1

 Score =  152 bits (383), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/183 (42%), Positives = 114/183 (62%), Gaps = 7/183 (3%)

Query: 22  KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFI---DRAALPKDVIFYTDE 78
           K  ++L  +GSVA IK   L     +   +  + T++SL F+   D   +      Y D+
Sbjct: 12  KKNLILGLTGSVATIKAKLLVEQLIQHFNLIVIPTETSLKFLSDQDFEFISSKCKIYKDK 71

Query: 79  DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDY-NKP 137
           DEW   + +  S LHI+LR WA+ ++I+P SANTLGKI+ GLCDNLLT ++RAWDY NK 
Sbjct: 72  DEWENVDLLKRSALHIDLRNWANSILISPCSANTLGKISNGLCDNLLTSLIRAWDYKNKS 131

Query: 138 LFVAPAMNTFMWNNPFTERHLMSIDEL--GISLIPPVSKRLACGDYGNGAMAE-PSLIYS 194
           + +APAMNT MW NPFT +H+ ++  +   + +I P+ K+L CGD G GAM + P ++  
Sbjct: 132 MILAPAMNTMMWENPFTFKHIETLKSISPNVFIIDPIEKKLFCGDIGMGAMEQVPKIVDF 191

Query: 195 TVR 197
           T+ 
Sbjct: 192 TIN 194

Necessary for the biosynthesis of coenzyme A. Catalyzes the decarboxylation of 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine.

Dictyostelium discoideum (taxid: 44689)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|P36076|CAB3_YEAST Coenzyme A biosynthesis protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAB3 PE=1 SV=1

 Score =  140 bits (354), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 89/233 (38%), Positives = 123/233 (52%), Gaps = 27/233 (11%)

Query: 7   TSTDREAMQVNTGLRKP-------------RILLAASGSVAAIK----FGNLCHCFS-EW 48
           T  ++E +   TG R P              IL+ A+GSVA IK       L   +  E 
Sbjct: 280 THKNKEVITAPTGPRVPFTEFFQKEDDKKFHILIGATGSVATIKVPLIIDKLFKIYGPEK 339

Query: 49  AEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWA--TWNKIGDS-----VLHIELRRWAD 101
             ++ + TK + HF+    +   V  + +ED W     NK   S     +LH ELR+WAD
Sbjct: 340 ISIQLIVTKPAEHFLKGLKMSTHVKIWREEDAWVFDAVNKNDTSLSLNLILHHELRKWAD 399

Query: 102 IMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSI 161
           I +IAPLSANTL K+A G+C+NLLT ++R W    P+ +APAMNTFM+ NP T++HL S+
Sbjct: 400 IFLIAPLSANTLAKLANGICNNLLTSVMRDWSPLTPVLIAPAMNTFMYINPMTKKHLTSL 459

Query: 162 --DELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKVG 212
             D   I ++ PV K L CGD G G M E + I   VR       ++ D + G
Sbjct: 460 VQDYPFIQVLKPVEKVLICGDIGMGGMREWTDIVEIVRRRINEIRKARDEETG 512

Component of the phosphopantothenoylcysteine decarboxylase (PPCDC) involved in the coenzyme A synthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q08438|VHS3_YEAST Phosphopantothenoylcysteine decarboxylase subunit VHS3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VHS3 PE=1 SV=1

 Score =  125 bits (313), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/132 (46%), Positives = 86/132 (65%), Gaps = 3/132 (2%)

Query: 68  LPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTC 127
           LP  + F+TD+DEW  W +  D VLHIELRRWADI+V+APL+ANTL KIA GLCDNLLT 
Sbjct: 434 LPAHIQFWTDQDEWDVWRQRTDPVLHIELRRWADILVVAPLTANTLAKIALGLCDNLLTS 493

Query: 128 IVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDE--LGISLIPPVSKRLAC-GDYGNG 184
           ++RAW+   P+F+AP+M +  +N+  T++H   I E    +++  P  K +   GD G  
Sbjct: 494 VIRAWNPTFPIFLAPSMGSGTFNSIMTKKHFRIIQEEMPWVTVFKPSEKVMGINGDIGLS 553

Query: 185 AMAEPSLIYSTV 196
            M + + I   +
Sbjct: 554 GMMDANEIVGKI 565

Component of the phosphopantothenoylcysteine decarboxylase (PPCDC) involved in the coenzyme A synthesis. Acts as an inhibitory subunit of protein phosphatase PPZ1, which is involved in many cellular processes such as G1-S transition or salt tolerance.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P36024|SIS2_YEAST Phosphopantothenoylcysteine decarboxylase subunit SIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SIS2 PE=1 SV=1

 Score =  123 bits (309), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 3/124 (2%)

Query: 68  LPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTC 127
           LP  +  +TD+DEW  W +  D VLHIELRRWADI+V+APL+ANTL KIA GLCDNLLT 
Sbjct: 353 LPPHIQLWTDQDEWDAWKQRTDPVLHIELRRWADILVVAPLTANTLSKIALGLCDNLLTS 412

Query: 128 IVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELG--ISLIPPVSKRLAC-GDYGNG 184
           ++RAW+ + P+ +AP+M +  +N+  T++ L +I E    +++  P  K +   GD G G
Sbjct: 413 VIRAWNPSYPILLAPSMVSSTFNSMMTKKQLQTIKEEMSWVTVFKPSEKVMDINGDIGLG 472

Query: 185 AMAE 188
            M +
Sbjct: 473 GMMD 476

Component of the phosphopantothenoylcysteine decarboxylase (PPCDC) involved in the coenzyme A synthesis. Acts as an inhibitory subunit of protein phosphatase PPZ1, which is involved in many cellular processes such as G1-S transition or salt tolerance. Also modulates the expression of the ENA1 ATPase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q12600|SIS2_CANTR Protein SIS2 OS=Candida tropicalis GN=SIS2 PE=3 SV=1

 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 106/178 (59%), Gaps = 13/178 (7%)

Query: 24  RILLAASG--SVAAIKF--GNLCHCF-SEWAEVRAVATKSSLHFIDRAALP-----KDVI 73
            +L+   G  SV  +K     L   + S+   ++ + TKSS +F+    L      K V 
Sbjct: 269 HVLIGVCGALSVGKVKLIVNKLLEIYTSDKISIQVILTKSSENFLLPETLNVLENVKKVR 328

Query: 74  FYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 133
            +TD DEW TW    D VLHIELRRWADI+++ PL+ANTL KI+ G+CDNLLT ++RAW+
Sbjct: 329 VWTDIDEWTTWKTRLDPVLHIELRRWADILLVCPLTANTLAKISLGICDNLLTNVIRAWN 388

Query: 134 YNKPLFVAPAMNTFMWNNPFTERHLMSI-DELG-ISLIPPVSKRLAC-GDYGNGAMAE 188
            + P+ +APAM++  +++  T+R L  I D++  I ++ P+ K     GD G G M +
Sbjct: 389 SSYPILLAPAMDSHSYSSSTTKRQLRLIADDMPWIEVLKPLEKVFGSYGDIGMGGMTD 446

May stimulate expression of certain genes that are periodically expressed during late G1. Also modulates the expression of the ENA1 ATPase.

Candida tropicalis (taxid: 5482)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
255570655	212	phosphopentothenoylcysteine decarboxylas	1.0	1.0	0.896	1e-111
118483279	217	unknown [Populus trichocarpa]	1.0	0.976	0.861	1e-105
224133816	207	predicted protein [Populus trichocarpa]	0.915	0.937	0.917	1e-103
357514735	212	Phosphopantothenoylcysteine decarboxylas	0.995	0.995	0.830	1e-100
351724523	211	uncharacterized protein LOC100499989 [Gl	0.995	1.0	0.815	1e-100
449469602	212	PREDICTED: phosphopantothenoylcysteine d	0.971	0.971	0.834	1e-100
388518215	213	unknown [Medicago truncatula]	0.995	0.990	0.820	1e-99
359807604	214	uncharacterized protein LOC100778368 [Gl	0.995	0.985	0.810	2e-99
225456777	214	PREDICTED: phosphopantothenoylcysteine d	0.995	0.985	0.796	2e-97
225456779	213	PREDICTED: phosphopantothenoylcysteine d	0.995	0.990	0.796	2e-97

>gi|255570655|ref|XP_002526282.1| phosphopentothenoylcysteine decarboxylase, putative [Ricinus communis] gi|223534363|gb|EEF36071.1| phosphopentothenoylcysteine decarboxylase, putative [Ricinus communis]

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/212 (89%), Positives = 201/212 (94%)

Query: 1   MAYSEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSL 60
           MAYSE  + +RE MQVN   RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATK+SL
Sbjct: 1   MAYSESATAEREPMQVNASPRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKASL 60

Query: 61  HFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGL 120
           HFIDRA+LPKDV+ YTDEDEW++WNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGL
Sbjct: 61  HFIDRASLPKDVVLYTDEDEWSSWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGL 120

Query: 121 CDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGD 180
           CDNLLTC+VRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPV+KRLACGD
Sbjct: 121 CDNLLTCVVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKRLACGD 180

Query: 181 YGNGAMAEPSLIYSTVRLFAESRNQSGDGKVG 212
           YGNGAMAEPSLIYST+RLF ESR Q GDG+VG
Sbjct: 181 YGNGAMAEPSLIYSTIRLFLESRPQPGDGRVG 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483279|gb|ABK93542.1| unknown [Populus trichocarpa]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/217 (86%), Positives = 201/217 (92%), Gaps = 5/217 (2%)

Query: 1   MAYSEPTSTDREAMQVNT-----GLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVA 55
           M YSEP + + E  QVN      G RKPRILLAASGSVAAIKFGNLCHCFSEWAEV+AVA
Sbjct: 1   MEYSEPVTAEMETAQVNAVAAAAGPRKPRILLAASGSVAAIKFGNLCHCFSEWAEVKAVA 60

Query: 56  TKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGK 115
           T++SLHFIDRAALPKDV+ YTDEDEW++WNKIGD+VLHIELRRWADIMVIAPLSANTLGK
Sbjct: 61  TRASLHFIDRAALPKDVVLYTDEDEWSSWNKIGDTVLHIELRRWADIMVIAPLSANTLGK 120

Query: 116 IAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKR 175
           IAGGLCDNLLTCIVRAWDY+KPLFVAPAMNTFMW+NPFTERHLMSIDELGISLIPPVSKR
Sbjct: 121 IAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWSNPFTERHLMSIDELGISLIPPVSKR 180

Query: 176 LACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKVG 212
           LACGDYGNGAMAEPSLIYSTVRLF ESR+Q+GD +VG
Sbjct: 181 LACGDYGNGAMAEPSLIYSTVRLFLESRSQAGDRRVG 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133816|ref|XP_002321668.1| predicted protein [Populus trichocarpa] gi|222868664|gb|EEF05795.1| predicted protein [Populus trichocarpa]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/194 (91%), Positives = 190/194 (97%)

Query: 19  GLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDE 78
           G RKPRILLAASGSVAAIKFGNLCHCFSEWAEV+AVAT++SLHFIDRAALPKDV+ YTDE
Sbjct: 14  GPRKPRILLAASGSVAAIKFGNLCHCFSEWAEVKAVATRASLHFIDRAALPKDVVLYTDE 73

Query: 79  DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
           DEW++WNKIGD+VLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDY+KPL
Sbjct: 74  DEWSSWNKIGDTVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPL 133

Query: 139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRL 198
           FVAPAMNTFMW+NPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRL
Sbjct: 134 FVAPAMNTFMWSNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRL 193

Query: 199 FAESRNQSGDGKVG 212
           F ESR+Q+GD +VG
Sbjct: 194 FLESRSQAGDRRVG 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514735|ref|XP_003627656.1| Phosphopantothenoylcysteine decarboxylase [Medicago truncatula] gi|355521678|gb|AET02132.1| Phosphopantothenoylcysteine decarboxylase [Medicago truncatula]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/212 (83%), Positives = 190/212 (89%), Gaps = 1/212 (0%)

Query: 1   MAYSEPTSTDREAMQVNTGL-RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSS 59
           MA  EP S+  E M VN    RKPRILLA SGSVAA+KF NLCHCFSEWAEVRAVATKSS
Sbjct: 1   MASPEPVSSVGENMSVNAAAPRKPRILLATSGSVAAVKFANLCHCFSEWAEVRAVATKSS 60

Query: 60  LHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGG 119
           LHFI+R A+PKDVI YTD+DEW++W K+GDSVLHIELR+WADIMVIAPLSANTLGKIAGG
Sbjct: 61  LHFIERTAIPKDVILYTDDDEWSSWKKLGDSVLHIELRKWADIMVIAPLSANTLGKIAGG 120

Query: 120 LCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACG 179
           LCDNLLTCIVRAWDY+KP FVAPAMNTFMWNNPFTERHL+SIDELGISLIPPV+KRLACG
Sbjct: 121 LCDNLLTCIVRAWDYSKPFFVAPAMNTFMWNNPFTERHLISIDELGISLIPPVTKRLACG 180

Query: 180 DYGNGAMAEPSLIYSTVRLFAESRNQSGDGKV 211
           DYGNGAMAEPS IYSTVRLF ES+ Q G+G V
Sbjct: 181 DYGNGAMAEPSTIYSTVRLFYESKAQQGNGDV 212

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724523|ref|NP_001235269.1| uncharacterized protein LOC100499989 [Glycine max] gi|255628357|gb|ACU14523.1| unknown [Glycine max]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/211 (81%), Positives = 191/211 (90%)

Query: 1   MAYSEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSL 60
           MA SEP   + E M V+   RKPRILLAASGSVAA+KF NLCHCFSEWA+VRAV+T +SL
Sbjct: 1   MAGSEPVRAEGETMAVDAAPRKPRILLAASGSVAAVKFANLCHCFSEWADVRAVSTSASL 60

Query: 61  HFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGL 120
           HFIDRAA+PKDVI YTD++EW++W K+GDSVLHIELR+WADIMVIAPLSANTLGKIAGGL
Sbjct: 61  HFIDRAAMPKDVILYTDDNEWSSWKKLGDSVLHIELRKWADIMVIAPLSANTLGKIAGGL 120

Query: 121 CDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGD 180
           CDNLLTCIVRAWDY+KP FVAPAMNTFMWNNPFTERHL+SIDELGISLIPPV+KRLACGD
Sbjct: 121 CDNLLTCIVRAWDYSKPFFVAPAMNTFMWNNPFTERHLISIDELGISLIPPVTKRLACGD 180

Query: 181 YGNGAMAEPSLIYSTVRLFAESRNQSGDGKV 211
           YGNGAMAEPS IYSTVRLF ES+ Q G+G +
Sbjct: 181 YGNGAMAEPSTIYSTVRLFYESKAQQGNGDI 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469602|ref|XP_004152508.1| PREDICTED: phosphopantothenoylcysteine decarboxylase-like [Cucumis sativus] gi|449487722|ref|XP_004157768.1| PREDICTED: phosphopantothenoylcysteine decarboxylase-like [Cucumis sativus] gi|307136125|gb|ADN33971.1| phosphopentothenoylcysteine decarboxylase [Cucumis melo subsp. melo]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/206 (83%), Positives = 188/206 (91%)

Query: 1   MAYSEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSL 60
           MAY +  + +RE MQVN   RKPRILLAASGSVA+IKFGNL H F+EWA+VRAVAT++SL
Sbjct: 1   MAYPKSANAEREVMQVNNVQRKPRILLAASGSVASIKFGNLYHSFAEWADVRAVATRASL 60

Query: 61  HFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGL 120
           HFIDRA+LPKD + YTDEDEW  WNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGL
Sbjct: 61  HFIDRASLPKDAVLYTDEDEWTGWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGL 120

Query: 121 CDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGD 180
           CDNLLTC+VRAWDYNKPLFVAPAMNTFMW NPFTERHL++IDELGI+LIPPV+KRLACGD
Sbjct: 121 CDNLLTCVVRAWDYNKPLFVAPAMNTFMWTNPFTERHLIAIDELGITLIPPVTKRLACGD 180

Query: 181 YGNGAMAEPSLIYSTVRLFAESRNQS 206
           YGNGAMAEPSLI+STVRLF ESR Q 
Sbjct: 181 YGNGAMAEPSLIFSTVRLFYESRMQQ 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518215|gb|AFK47169.1| unknown [Medicago truncatula]

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 174/212 (82%), Positives = 189/212 (89%), Gaps = 1/212 (0%)

Query: 1   MAYSEPTSTDREAMQVNTGL-RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSS 59
           MA  EP S+  E M VN    RKPRILLA SGSVAA+KF NLCHCFSEWAEVRAVATKSS
Sbjct: 2   MASPEPVSSVGENMSVNAAAPRKPRILLATSGSVAAVKFANLCHCFSEWAEVRAVATKSS 61

Query: 60  LHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGG 119
           LHFI+R A+PKDVI YTD+DEW++W K+GDSVLHIELR+WADIMVIAPLSANTL KIAGG
Sbjct: 62  LHFIERTAIPKDVILYTDDDEWSSWKKLGDSVLHIELRKWADIMVIAPLSANTLSKIAGG 121

Query: 120 LCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACG 179
           LCDNLLTCIVRAWDY+KP FVAPAMNTFMWNNPFTERHL+SIDELGISLIPPV+KRLACG
Sbjct: 122 LCDNLLTCIVRAWDYSKPFFVAPAMNTFMWNNPFTERHLISIDELGISLIPPVTKRLACG 181

Query: 180 DYGNGAMAEPSLIYSTVRLFAESRNQSGDGKV 211
           DYGNGAMA+PS IYSTVRLF ES+ Q G+G V
Sbjct: 182 DYGNGAMADPSTIYSTVRLFYESKAQQGNGDV 213

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807604|ref|NP_001240905.1| uncharacterized protein LOC100778368 [Glycine max] gi|255636754|gb|ACU18711.1| unknown [Glycine max]

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 171/211 (81%), Positives = 188/211 (89%)

Query: 1   MAYSEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSL 60
           MA SEP S + E+M V+   RKPRILLAASGSVAA+KF NLCHCFSEWA+VRAV++  SL
Sbjct: 1   MAGSEPVSAEGESMAVDAAPRKPRILLAASGSVAAVKFANLCHCFSEWADVRAVSSSGSL 60

Query: 61  HFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGL 120
           HFIDRA++PKDVI YTDEDEW++W K+GDSVLHIELR+WADIMVIAPLSANTLGKIAGGL
Sbjct: 61  HFIDRASMPKDVILYTDEDEWSSWKKLGDSVLHIELRKWADIMVIAPLSANTLGKIAGGL 120

Query: 121 CDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGD 180
           CDNLLTCIVRAWDY+KP FVAPAMNT MWNNPFTERH +SIDELGISLIPPV+KRLACGD
Sbjct: 121 CDNLLTCIVRAWDYSKPFFVAPAMNTLMWNNPFTERHFISIDELGISLIPPVTKRLACGD 180

Query: 181 YGNGAMAEPSLIYSTVRLFAESRNQSGDGKV 211
           YGNGAMAEPS IYSTVRLF ES+ Q G   V
Sbjct: 181 YGNGAMAEPSTIYSTVRLFYESKAQQGRAVV 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456777|ref|XP_002276829.1| PREDICTED: phosphopantothenoylcysteine decarboxylase-like isoform 1 [Vitis vinifera]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 168/211 (79%), Positives = 187/211 (88%)

Query: 1   MAYSEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSL 60
           M Y+EP S + +A+ VN   R+PRILLAASGSVAA+KFGNL H F EWAEVRAV TK+SL
Sbjct: 3   MTYAEPLSPEVDAIPVNIAPRRPRILLAASGSVAAMKFGNLVHSFCEWAEVRAVVTKASL 62

Query: 61  HFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGL 120
           HFIDRAALPKD+  YTD+DEW++W K+GDSVLHIELRRWAD+MVIAPLSANTLGKIAGGL
Sbjct: 63  HFIDRAALPKDLYLYTDDDEWSSWTKLGDSVLHIELRRWADVMVIAPLSANTLGKIAGGL 122

Query: 121 CDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGD 180
           CDNLLTCIVRAWDY+KP+FVAPAMNTFMW NPFTERHLM+IDELGISLIPPV+KRLACGD
Sbjct: 123 CDNLLTCIVRAWDYSKPMFVAPAMNTFMWTNPFTERHLMTIDELGISLIPPVTKRLACGD 182

Query: 181 YGNGAMAEPSLIYSTVRLFAESRNQSGDGKV 211
           YG GAMAEP LI+STVRLF E+R QS    V
Sbjct: 183 YGTGAMAEPFLIHSTVRLFLETRAQSSSSNV 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456779|ref|XP_002276875.1| PREDICTED: phosphopantothenoylcysteine decarboxylase-like isoform 2 [Vitis vinifera] gi|225456781|ref|XP_002276901.1| PREDICTED: phosphopantothenoylcysteine decarboxylase-like isoform 3 [Vitis vinifera]

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 168/211 (79%), Positives = 187/211 (88%)

Query: 1   MAYSEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSL 60
           M Y+EP S + +A+ VN   R+PRILLAASGSVAA+KFGNL H F EWAEVRAV TK+SL
Sbjct: 2   MTYAEPLSPEVDAIPVNIAPRRPRILLAASGSVAAMKFGNLVHSFCEWAEVRAVVTKASL 61

Query: 61  HFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGL 120
           HFIDRAALPKD+  YTD+DEW++W K+GDSVLHIELRRWAD+MVIAPLSANTLGKIAGGL
Sbjct: 62  HFIDRAALPKDLYLYTDDDEWSSWTKLGDSVLHIELRRWADVMVIAPLSANTLGKIAGGL 121

Query: 121 CDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGD 180
           CDNLLTCIVRAWDY+KP+FVAPAMNTFMW NPFTERHLM+IDELGISLIPPV+KRLACGD
Sbjct: 122 CDNLLTCIVRAWDYSKPMFVAPAMNTFMWTNPFTERHLMTIDELGISLIPPVTKRLACGD 181

Query: 181 YGNGAMAEPSLIYSTVRLFAESRNQSGDGKV 211
           YG GAMAEP LI+STVRLF E+R QS    V
Sbjct: 182 YGTGAMAEPFLIHSTVRLFLETRAQSSSSNV 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
TAIR|locus:2087669	209	HAL3A "HAL3-like protein A" [A	0.933	0.947	0.825	9.3e-91
TAIR|locus:1006230763	201	ATHAL3B [Arabidopsis thaliana	0.924	0.975	0.802	2e-86
ZFIN|ZDB-GENE-040426-1749	231	ppcdc "phosphopantothenoylcyst	0.858	0.787	0.529	6.2e-46
MGI|MGI:1914062	204	Ppcdc "phosphopantothenoylcyst	0.825	0.857	0.502	2.8e-43
RGD|1306267	204	Ppcdc "phosphopantothenoylcyst	0.825	0.857	0.502	2.8e-43
UNIPROTKB|D3ZZZ5	242	Ppcdc "Protein Ppcdc" [Rattus	0.825	0.723	0.502	2.8e-43
UNIPROTKB|E1BUI2	204	PPCDC "Uncharacterized protein	0.849	0.882	0.494	4.5e-43
UNIPROTKB|Q58DB8	230	MDS018 "Putative uncharacteriz	0.886	0.817	0.471	4.5e-43
UNIPROTKB|I3LFK1	220	PPCDC "Uncharacterized protein	0.825	0.795	0.491	3.2e-42
FB|FBgn0050290	191	Ppcdc "Phosphopantothenoylcyst	0.839	0.931	0.462	5.2e-42

TAIR|locus:2087669 HAL3A "HAL3-like protein A" [Arabidopsis thaliana (taxid:3702)]

 Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
 Identities = 165/200 (82%), Positives = 185/200 (92%)

Query:    10 DREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALP 69
             DR+ M+VNT  RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP
Sbjct:     7 DRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLP 66

Query:    70 KDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV 129
             ++V  YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+
Sbjct:    67 QEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCII 126

Query:   130 RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEP 189
             RAWDY KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLACGDYGNGAMAEP
Sbjct:   127 RAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEP 186

Query:   190 SLIYSTVRLFAESR--NQSG 207
             SLIYSTVRLF ES+   Q+G
Sbjct:   187 SLIYSTVRLFWESQAHQQTG 206

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0042538 "hyperosmotic salinity response" evidence=IEP;IMP

GO:0010181 "FMN binding" evidence=ISS

GO:0004633 "phosphopantothenoylcysteine decarboxylase activity" evidence=IDA;TAS

GO:0015937 "coenzyme A biosynthetic process" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:1006230763 ATHAL3B [Arabidopsis thaliana (taxid:3702)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 158/197 (80%), Positives = 181/197 (91%)

Query:    14 MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVI 73
             M+V+T  RKPRILLAASGSVA+IKF NLCHCFSEWAEV+AVA+KSSL+F+D+ +LP++V 
Sbjct:     3 MEVDTVTRKPRILLAASGSVASIKFSNLCHCFSEWAEVKAVASKSSLNFVDKPSLPQNVT 62

Query:    74 FYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 133
              YTDEDEW++WNKIGD VLHIELRRWAD+M+IAPLSANTL KIAGGLCDNLLTCIVRAWD
Sbjct:    63 LYTDEDEWSSWNKIGDPVLHIELRRWADVMIIAPLSANTLAKIAGGLCDNLLTCIVRAWD 122

Query:   134 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIY 193
             Y+KPLFVAPAMNT MWNNPFTERHL+ +DELGI+LIPP+ K+LACGDYGNGAMAEPSLIY
Sbjct:   123 YSKPLFVAPAMNTLMWNNPFTERHLVLLDELGITLIPPIKKKLACGDYGNGAMAEPSLIY 182

Query:   194 STVRLFAESR-NQSGDG 209
             STVRLF ES+  +  DG
Sbjct:   183 STVRLFWESQARKQRDG 199

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=ISS

GO:0042538 "hyperosmotic salinity response" evidence=IEP

GO:0010181 "FMN binding" evidence=ISS

GO:0004633 "phosphopantothenoylcysteine decarboxylase activity" evidence=IGI

GO:0015937 "coenzyme A biosynthetic process" evidence=IMP

ZFIN|ZDB-GENE-040426-1749 ppcdc "phosphopantothenoylcysteine decarboxylase" [Danio rerio (taxid:7955)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 99/187 (52%), Positives = 123/187 (65%)

Query:    18 TGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEV--RAVATKSSLHFIDRAALPKDVIFY 75
             TG R   +L+  +GSVAA+K   L     E  EV  R V T  + HF D   +P  V  Y
Sbjct:    45 TGSRF-HVLVGLTGSVAALKAPLLVKQLLEIPEVDVRVVTTDHATHFYDINEVPVRV--Y 101

Query:    76 TDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYN 135
             TD+DEW  W K  D VLHIELRRWAD++VIAPL ANTLGKIA G+CDNLLTC+VRAWD +
Sbjct:   102 TDKDEWEMWTKRSDPVLHIELRRWADLLVIAPLDANTLGKIASGICDNLLTCVVRAWDIS 161

Query:   136 KPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYST 195
             +PL   PAMNT MW +P T + + +I   G + IP ++K+L CGD G GAMAE S I  T
Sbjct:   162 RPLLFCPAMNTAMWQHPITAQQVSTIKAFGYAEIPCIAKKLVCGDEGKGAMAEVSTIVDT 221

Query:   196 VRLFAES 202
             V+ + +S
Sbjct:   222 VKQYVQS 228

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1914062 Ppcdc "phosphopantothenoylcysteine decarboxylase" [Mus musculus (taxid:10090)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 90/179 (50%), Positives = 115/179 (64%)

Query:    21 RKPRILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATKSSLHFIDRAALPKDVIFYTDE 78
             RK R+L+  +GSVAA+K   L     +    EV  V T+ + HF     +P  V  Y+D 
Sbjct:    16 RKFRVLVGVTGSVAALKLPLLVSKLLDVPGLEVTVVTTERAKHFYSPQDVP--VTLYSDA 73

Query:    79 DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
             DEW  W +  D VLHI+LRRWAD+M++APL ANTLGK+A G+CDNLLTC++RAWD NKPL
Sbjct:    74 DEWEMWKRRSDPVLHIDLRRWADLMLVAPLDANTLGKVASGICDNLLTCVIRAWDLNKPL 133

Query:   139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 197
                PAMNT MW +P T + +  +   G   IP VSK+L CGD G GAMAE   I + V+
Sbjct:   134 LFCPAMNTAMWEHPLTAQQVAQLKAFGYVEIPCVSKKLVCGDQGLGAMAEVETIVAKVQ 192

GO:0003674 "molecular_function" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0004633 "phosphopantothenoylcysteine decarboxylase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0015937 "coenzyme A biosynthetic process" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

RGD|1306267 Ppcdc "phosphopantothenoylcysteine decarboxylase" [Rattus norvegicus (taxid:10116)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 90/179 (50%), Positives = 115/179 (64%)

Query:    21 RKPRILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATKSSLHFIDRAALPKDVIFYTDE 78
             RK  +L+  +GSVAA+K   L     +    EV  V T+ + HF     +P  V  Y+D 
Sbjct:    16 RKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVTVVTTERAKHFYSPQDVP--VTLYSDA 73

Query:    79 DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
             DEW  W +  D VLHI+LRRWAD+MV+APL ANTLGK+A G+CDNLLTC++RAWD NKPL
Sbjct:    74 DEWEMWKRRSDPVLHIDLRRWADLMVVAPLDANTLGKVASGICDNLLTCVIRAWDLNKPL 133

Query:   139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 197
                PAMNT MW +P T + +  +   G   IP VSK+L CGD G GAMAE  +I + V+
Sbjct:   134 LFCPAMNTAMWEHPLTAQQVGQLKAFGYVEIPCVSKKLVCGDQGLGAMAEVEIIVAKVK 192

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|D3ZZZ5 Ppcdc "Protein Ppcdc" [Rattus norvegicus (taxid:10116)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 90/179 (50%), Positives = 115/179 (64%)

Query:    21 RKPRILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATKSSLHFIDRAALPKDVIFYTDE 78
             RK  +L+  +GSVAA+K   L     +    EV  V T+ + HF     +P  V  Y+D 
Sbjct:    54 RKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVTVVTTERAKHFYSPQDVP--VTLYSDA 111

Query:    79 DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
             DEW  W +  D VLHI+LRRWAD+MV+APL ANTLGK+A G+CDNLLTC++RAWD NKPL
Sbjct:   112 DEWEMWKRRSDPVLHIDLRRWADLMVVAPLDANTLGKVASGICDNLLTCVIRAWDLNKPL 171

Query:   139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 197
                PAMNT MW +P T + +  +   G   IP VSK+L CGD G GAMAE  +I + V+
Sbjct:   172 LFCPAMNTAMWEHPLTAQQVGQLKAFGYVEIPCVSKKLVCGDQGLGAMAEVEIIVAKVK 230

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E1BUI2 PPCDC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 91/184 (49%), Positives = 116/184 (63%)

Query:    22 KPRILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATKSSLHFIDRAALPKDVIFYTDED 79
             K  +L+  +GSVAA+K   L     E    EV+ V T+ + HF +   +P  V  Y+DED
Sbjct:    17 KFHVLVGVTGSVAALKLPLLVSGLLEIPGLEVKVVTTERAKHFYNPQEIP--VTLYSDED 74

Query:    80 EWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLF 139
             EW  W    D VLHIELRRWAD+M++APL ANTL K+A G+CDNLLTC++RAWD +KPL 
Sbjct:    75 EWQLWKGRSDPVLHIELRRWADLMLVAPLDANTLAKLANGICDNLLTCVIRAWDLHKPLL 134

Query:   140 VAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLF 199
               PAMNT MW +P T + +  +   G + IP V K+L CGD G GAMAE   I  +VR  
Sbjct:   135 FCPAMNTAMWEHPITAQQVEQLKGFGYTEIPCVVKKLVCGDEGRGAMAEVWTIVESVRRI 194

Query:   200 AESR 203
              E R
Sbjct:   195 LEER 198

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q58DB8 MDS018 "Putative uncharacterized protein MDS018" [Bos taurus (taxid:9913)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 92/195 (47%), Positives = 122/195 (62%)

Query:     5 EPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWA--EVRAVATKSSLHF 62
             EP +T   A  +    R+ R+L+  +GSVAA+K   L     +    EV  V T+ + HF
Sbjct:    19 EPRATSSAAAPLR---RQFRVLVGVTGSVAALKLPLLVSKLLDIPDLEVAVVTTERAKHF 75

Query:    63 IDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCD 122
                  +P  V  Y+D DEW  W +  D VLHI+LRRWAD+M++APL ANTLGK+A G+CD
Sbjct:    76 YSPRDVP--VTLYSDADEWEMWKRRSDPVLHIDLRRWADLMLVAPLDANTLGKVASGICD 133

Query:   123 NLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYG 182
             NLLTC++RAWD +KPL   PAMNT MW +P TE+ +  + + G   IP V+K+L CGD G
Sbjct:   134 NLLTCVIRAWDRSKPLLFCPAMNTAMWEHPITEQQVGQLKDFGYIEIPCVAKKLVCGDQG 193

Query:   183 NGAMAEPSLIYSTVR 197
              GAMAE   I   V+
Sbjct:   194 LGAMAEVGTIVGKVK 208

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|I3LFK1 PPCDC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 88/179 (49%), Positives = 115/179 (64%)

Query:    21 RKPRILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATKSSLHFIDRAALPKDVIFYTDE 78
             R+ R+L+  +GSVAA+K   L     +    EV  V T+ + HF +   +P  V  Y+D 
Sbjct:    32 RQFRVLIGVTGSVAALKLPLLVSRLLDIPGLEVAVVTTERAKHFYNPQDVP--VTLYSDA 89

Query:    79 DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
             DEW  W    D VLHI+LRRWAD+M++APL ANTLGK+A G+CDNLLTC++RAWD +KPL
Sbjct:    90 DEWEMWKCRSDPVLHIDLRRWADLMLVAPLDANTLGKVASGICDNLLTCVIRAWDRSKPL 149

Query:   139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 197
                PAMNT MW +P TE+ +  +   G   IP V+K+L CGD G GAMAE   I   V+
Sbjct:   150 LFCPAMNTAMWEHPLTEQQVCQLKAFGYVEIPCVAKKLVCGDQGLGAMAEVGTIVDKVK 208

GO:0003824 "catalytic activity" evidence=IEA

FB|FBgn0050290 Ppcdc "Phosphopantothenoylcysteine decarboxylase" [Drosophila melanogaster (taxid:7227)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 86/186 (46%), Positives = 123/186 (66%)

Query:    22 KPR--ILLAASGSVAAIKFGNLCHCFSEWA-----EVRAVATKSSLHFIDRAALPKDVIF 74
             KP   +++AA+GSVA IK   L    S+        ++ + T+++ HF +   +P++V  
Sbjct:     2 KPERNVMIAATGSVATIKLAQLIRELSDERLPFKFHLKVLITEAAKHFFELEQIPENVPI 61

Query:    75 YTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDY 134
             Y + DEW TWNK GD VLHI+L +WAD++VIAPLSAN+L K+A G+CDN++ C+VRAWD 
Sbjct:    62 YHNRDEWITWNKRGDPVLHIDLGKWADLLVIAPLSANSLSKMATGICDNIVMCVVRAWDL 121

Query:   135 NKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAE-PSLIY 193
              KPL  APAMNT M+++P T   +  +   G   IP +SK L CGD GNGAMAE P+++ 
Sbjct:   122 EKPLLFAPAMNTRMYDHPITREQIDKLTSWGYKEIPCISKTLMCGDTGNGAMAEVPTIVE 181

Query:   194 STVRLF 199
             + +  F
Sbjct:   182 AVLSAF 187

GO:0003824 "catalytic activity" evidence=IEA

GO:0015937 "coenzyme A biosynthetic process" evidence=ISA

GO:0004633 "phosphopantothenoylcysteine decarboxylase activity" evidence=ISA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96CD2	COAC_HUMAN	4, ., 1, ., 1, ., 3, 6	0.4736	0.8679	0.9019	yes	no
Q9SWE5	HAL3A_ARATH	4, ., 1, ., 1, ., 3, 6	0.82	0.9433	0.9569	yes	no
Q8BZB2	COAC_MOUSE	4, ., 1, ., 1, ., 3, 6	0.5027	0.8254	0.8578	yes	no
Q54Y51	COAC_DICDI	4, ., 1, ., 1, ., 3, 6	0.4262	0.8301	0.8934	yes	no
P94063	HAL3B_ARATH	4, ., 1, ., 1, ., 3, 6	0.8210	0.8962	0.9452	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.1.36	0.979
3rd Layer	4.1.1	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
PLN02496	209	PLN02496, PLN02496, probable phosphopantothenoylcy	1e-153
PRK05579	399	PRK05579, PRK05579, bifunctional phosphopantotheno	2e-50
PRK07313	182	PRK07313, PRK07313, phosphopantothenoylcysteine de	2e-47
pfam02441	132	pfam02441, Flavoprotein, Flavoprotein	2e-42
TIGR00521	390	TIGR00521, coaBC_dfp, phosphopantothenoylcysteine	2e-36
COG0452	392	COG0452, Dfp, Phosphopantothenoylcysteine syntheta	3e-35
TIGR02113	177	TIGR02113, coaC_strep, phosphopantothenoylcysteine	3e-35
PRK13982	475	PRK13982, PRK13982, bifunctional SbtC-like/phospho	2e-26
PRK06029	185	PRK06029, PRK06029, 3-octaprenyl-4-hydroxybenzoate	3e-06
PRK05920	204	PRK05920, PRK05920, aromatic acid decarboxylase; V	2e-05
COG0163	191	COG0163, UbiX, 3-polyprenyl-4-hydroxybenzoate deca	3e-05
TIGR00421	181	TIGR00421, ubiX_pad, polyprenyl P-hydroxybenzoate	0.001
PRK08305	196	PRK08305, spoVFB, dipicolinate synthase subunit B;	0.004

>gnl|CDD|215274 PLN02496, PLN02496, probable phosphopantothenoylcysteine decarboxylase

 Score =  422 bits (1086), Expect = e-153
 Identities = 184/209 (88%), Positives = 195/209 (93%)

Query: 4   SEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFI 63
           +EP S + +AM+VNT  RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAV TK+SLHFI
Sbjct: 1   AEPLSPEVDAMEVNTAPRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVVTKASLHFI 60

Query: 64  DRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDN 123
           DRA+LPKDV  YTDEDEW++WNKIGDSVLHIELRRWAD+MVIAPLSANTLGKIAGGLCDN
Sbjct: 61  DRASLPKDVTLYTDEDEWSSWNKIGDSVLHIELRRWADVMVIAPLSANTLGKIAGGLCDN 120

Query: 124 LLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGN 183
           LLTCIVRAWDY+KPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPV+KRLACGDYGN
Sbjct: 121 LLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKRLACGDYGN 180

Query: 184 GAMAEPSLIYSTVRLFAESRNQSGDGKVG 212
           GAMAEPSLIYSTVRLF ESR QS  G V 
Sbjct: 181 GAMAEPSLIYSTVRLFLESRAQSQSGGVS 209

Length = 209

>gnl|CDD|235513 PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

 Score =  167 bits (426), Expect = 2e-50
 Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 24/193 (12%)

Query: 20  LRKPRILLAASGSVAAIKFGNLCHCFSEW-AEVRAVATKSSLHFIDRAALPKDVIFYTDE 78
           L   RI+L  SG +AA K   L     +  A+VR V T+++  F+               
Sbjct: 4   LAGKRIVLGVSGGIAAYKALELVRRLRKAGADVRVVMTEAAKKFVTPLTF---------- 53

Query: 79  DEWATWNK---------IGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV 129
            +  + N             ++ HIEL +WAD+++IAP +A+ + K+A G+ D+LLT  +
Sbjct: 54  -QALSGNPVSTDLWDPAAEAAMGHIELAKWADLVLIAPATADLIAKLAHGIADDLLTTTL 112

Query: 130 RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEP 189
            A     P+ VAPAMNT MW NP T+R+L ++   G+ +I P S RLACGD G G MAEP
Sbjct: 113 LA--TTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRLACGDVGPGRMAEP 170

Query: 190 S-LIYSTVRLFAE 201
             ++ +  R  + 
Sbjct: 171 EEIVAAAERALSP 183

Length = 399

>gnl|CDD|235986 PRK07313, PRK07313, phosphopantothenoylcysteine decarboxylase; Validated

 Score =  153 bits (389), Expect = 2e-47
 Identities = 65/186 (34%), Positives = 100/186 (53%), Gaps = 9/186 (4%)

Query: 23  PRILLAASGSVAAIKFGNLCHCFS-EWAEVRAVATKSSLHFIDR---AALPKDVIFYTDE 78
             ILLA SGS+AA K  +L    +    +V  + TK++  FI       L K+ + + D 
Sbjct: 2   KNILLAVSGSIAAYKAADLTSQLTKRGYQVTVLMTKAATKFITPLTLQVLSKNPV-HLDV 60

Query: 79  DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
            +          + HIEL + AD+ ++AP +ANT+ K+A G+ D+L+T +  A     P 
Sbjct: 61  MD----EHDPKLMNHIELAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPK 116

Query: 139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRL 198
            +APAMNT M+ NP T+R+L ++ E G+  I P    LACGD G GA+A+   I  T+  
Sbjct: 117 LIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACGDEGYGALADIETILETIEN 176

Query: 199 FAESRN 204
             + + 
Sbjct: 177 TLKEKT 182

Length = 182

>gnl|CDD|217035 pfam02441, Flavoprotein, Flavoprotein

 Score =  139 bits (352), Expect = 2e-42
 Identities = 61/136 (44%), Positives = 73/136 (53%), Gaps = 10/136 (7%)

Query: 24  RILLAASGSVAAIKFGNLCHCFS-EWAEVRAVATKSSLHFIDRAALPKDVI--FYTDEDE 80
           +ILL  +GS AAIK   L      E AEVR + +K++  FI    L        YTD   
Sbjct: 2   KILLGITGSSAAIKALRLLRELKKEGAEVRVILSKAAKKFITPETLEALSGEEVYTDAWY 61

Query: 81  WATWNKIGDSVLHIEL-RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDY-NKPL 138
                   D + HI L  RWAD+MV+AP +ANTL KIA G+ DNLLT    A     KPL
Sbjct: 62  -----DEDDIIAHIALGSRWADLMVVAPATANTLAKIANGIADNLLTRAALAALKERKPL 116

Query: 139 FVAPAMNTFMWNNPFT 154
            +APAMN  MW NP T
Sbjct: 117 VLAPAMNPLMWENPIT 132

This family contains diverse flavoprotein enzymes. This family includes epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance. dipicolinate synthase catalyzes the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenyl-acrylic acid decarboxylase (EC:4.1.1.-). Length = 132

>gnl|CDD|233006 TIGR00521, coaBC_dfp, phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase

 Score =  130 bits (330), Expect = 2e-36
 Identities = 65/178 (36%), Positives = 97/178 (54%), Gaps = 14/178 (7%)

Query: 20  LRKPRILLAASGSVAAIKFGNLCH-CFSEWAEVRAVATKSSLHFIDRAALP----KDVIF 74
           L   +ILL  +G +AA K   L      + AEV+ + T+++  FI    L       V  
Sbjct: 1   LENKKILLGVTGGIAAYKTVELVRELVRQGAEVKVIMTEAAKKFITPLTLEALSGHKV-- 58

Query: 75  YTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDY 134
            T+      W  I  + LHI+L +WAD+++IAP +ANT+ KIA G+ D+L++    A   
Sbjct: 59  VTE-----LWGPIEHNALHIDLAKWADLILIAPATANTISKIAHGIADDLVSTTALA--A 111

Query: 135 NKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLI 192
           + P+ +APAMN  M+NNP  + ++  + + G   I P S  LACGD G G +AEP  I
Sbjct: 112 SAPIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLACGDEGKGRLAEPETI 169

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 390

>gnl|CDD|223529 COG0452, Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]

 Score =  127 bits (322), Expect = 3e-35
 Identities = 72/181 (39%), Positives = 99/181 (54%), Gaps = 14/181 (7%)

Query: 20  LRKPRILLAASGSVAAIKFGNLC-HCFSEWAEVRAVATKSSLHFI---DRAALPKDVIFY 75
           L   RILL  +GS+AA K   L        AEVR V T+S+  FI      AL  + + Y
Sbjct: 2   LEGKRILLGVTGSIAAYKSVELVRLLRRSGAEVRVVMTESARKFITPLTFQALSGNPV-Y 60

Query: 76  TDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYN 135
           T  DE     ++  SV HIEL RWAD++++AP +ANT+ K+A G+ DNL T  + A    
Sbjct: 61  TLLDE-----ELTGSVEHIELARWADLLLVAPATANTIAKLAVGIADNLSTTTLLAA--K 113

Query: 136 KPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYST 195
            PL +APAMN  M+ +P T+ +L  +   G+  I P+   LA  D G+G +AEP  I   
Sbjct: 114 APLVLAPAMNVIMYTHPATQENLQRLKSEGVLFIEPIEGELA--DVGDGRLAEPEEIVEA 171

Query: 196 V 196
            
Sbjct: 172 A 172

Length = 392

>gnl|CDD|131168 TIGR02113, coaC_strep, phosphopantothenoylcysteine decarboxylase, streptococcal

 Score =  122 bits (307), Expect = 3e-35
 Identities = 63/178 (35%), Positives = 98/178 (55%), Gaps = 9/178 (5%)

Query: 24  RILLAASGSVAAIKFGNLCHCFSEWA-EVRAVATKSSLHFIDR---AALPKDVIFYTDED 79
           +ILLA +GS+AA K  +L    ++   +V  + T+++  FI       L K+ +     D
Sbjct: 2   KILLAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFITPLTLQVLSKNPVHLDVMD 61

Query: 80  EWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLF 139
           E          + HIEL + AD+ ++AP SANT+  +A G  DN++T +  A     P  
Sbjct: 62  E-----HDPKVINHIELAKKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKL 116

Query: 140 VAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 197
           +APAMNT M+ NP T+R++  + ++G   I P    LACGDYG GA+A+   I  T++
Sbjct: 117 IAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLACGDYGRGALADLDDILQTIK 174

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 177

>gnl|CDD|172484 PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

 Score =  105 bits (263), Expect = 2e-26
 Identities = 68/197 (34%), Positives = 101/197 (51%), Gaps = 20/197 (10%)

Query: 5   EPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFI 63
             ++    A +    L   R+ L   G +AA K  +L     E  A VR V TK++  F+
Sbjct: 53  PVSAAAPPAAREQASLASKRVTLIIGGGIAAYKALDLIRRLKERGAHVRCVLTKAAQQFV 112

Query: 64  ---DRAALPKDVIFYTD----EDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKI 116
                +AL    + YTD    E E+      G    HI L R  D++V+AP +A+ + K+
Sbjct: 113 TPLTASALSGQRV-YTDLFDPESEF----DAG----HIRLARDCDLIVVAPATADLMAKM 163

Query: 117 AGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRL 176
           A GL D+L + I+ A   N+P+ +APAMN  MWNNP T R++  +   G+ +I P +  +
Sbjct: 164 ANGLADDLASAILLA--ANRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNAGEM 221

Query: 177 A-CGDYGNGAMAEPSLI 192
           A  G+ G G MAEP  I
Sbjct: 222 AERGEAGVGRMAEPLEI 238

Length = 475

>gnl|CDD|235677 PRK06029, PRK06029, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 101 DIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDY----NKPLFVAPAMNTFMWNNPFTER 156
           D MVIAP S  TL KIA G  DNL+T   RA D      + L +          +    R
Sbjct: 80  DGMVIAPCSMKTLAKIAHGYSDNLIT---RAADVMLKERRRLVLCVRETPL---HLGHLR 133

Query: 157 HLMSIDELGISLIPPV 172
           ++  + E+G  ++PPV
Sbjct: 134 NMTKLAEMGAIIMPPV 149

Length = 185

>gnl|CDD|180312 PRK05920, PRK05920, aromatic acid decarboxylase; Validated

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 19/33 (57%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 101 DIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 133
           D MVIAP S  TL  IA GL DNL+    RA D
Sbjct: 95  DGMVIAPCSMGTLAAIAHGLSDNLIE---RAAD 124

Length = 204

>gnl|CDD|223241 COG0163, UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 42/170 (24%), Positives = 65/170 (38%), Gaps = 37/170 (21%)

Query: 21  RKPRILLA---ASGSVAAIKF----GNLC---HCF-SEWAEVRAVATKSSLHFIDRAALP 69
              RI++    ASG++  ++       L    H   S+ A+        +   +      
Sbjct: 1   MMKRIIVGISGASGAIYGVRLLEVLRELGVETHLVISKAAKKTLKYETGNDESLGEVLAL 60

Query: 70  KDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV 129
            DV+   DE +      I             D M+IAP S  TL  IA G  DNL+T   
Sbjct: 61  ADVVH--DEKDIGA--PIASGSFRT------DGMIIAPCSMKTLAAIAHGFADNLIT--- 107

Query: 130 RAWDY----NKPLFVAPAMNTFMWNNPFTERHL---MSIDELGISLIPPV 172
           RA D      +PL + P         P +  HL   + + E+G  ++PP+
Sbjct: 108 RAADVALKERRPLVLVPR------ETPLSLIHLENMLKLAEMGAIIMPPM 151

Length = 191

>gnl|CDD|129515 TIGR00421, ubiX_pad, polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 35/133 (26%), Positives = 49/133 (36%), Gaps = 41/133 (30%)

Query: 47  EWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIA 106
           +  EV  +ATK                 Y D D++A     G            D MV+ 
Sbjct: 48  DPGEVEELATK-----------------YYDADDFAAPIASGSFPF--------DGMVVV 82

Query: 107 PLSANTLGKIAGGLCDNLLTCIVRAWDY----NKPLFVAPAMNTFMWNNPFTERHL---M 159
           P S  TL  IA G  DNL+T   RA D      + L + P         P    HL   +
Sbjct: 83  PCSMKTLSAIANGYADNLIT---RAADVCLKERRKLVLVPR------ETPLNSIHLENML 133

Query: 160 SIDELGISLIPPV 172
            +  +G  ++PP+
Sbjct: 134 RLSRMGAIILPPM 146

In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of pfam02441 [Unknown function, Enzymes of unknown specificity]. Length = 181

>gnl|CDD|181370 PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 101 DIMVIAPLSANTLGKIAGGLCDN 123
           D MVIAP + NT+ K+A  + D+
Sbjct: 86  DCMVIAPCTGNTMAKLANAITDS 108

Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
PLN02496	209	probable phosphopantothenoylcysteine decarboxylase	100.0
PRK07313	182	phosphopantothenoylcysteine decarboxylase; Validat	100.0
TIGR02113	177	coaC_strep phosphopantothenoylcysteine decarboxyla	100.0
KOG0672	218	consensus Halotolerance protein HAL3 (contains fla	100.0
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	100.0
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	100.0
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	100.0
PRK08305	196	spoVFB dipicolinate synthase subunit B; Reviewed	100.0
PRK05920	204	aromatic acid decarboxylase; Validated	100.0
PRK06029	185	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Prov	100.0
COG0452	392	Dfp Phosphopantothenoylcysteine synthetase/decarbo	100.0
TIGR00421	181	ubiX_pad polyprenyl P-hydroxybenzoate and phenylac	100.0
TIGR02852	187	spore_dpaB dipicolinic acid synthetase, B subunit.	100.0
PF02441	129	Flavoprotein: Flavoprotein; InterPro: IPR003382 Th	100.0
COG0163	191	UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase	99.97
TIGR02699	174	archaeo_AfpA archaeoflavoprotein AfpA. The prototy	99.96
TIGR02700	234	flavo_MJ0208 archaeoflavoprotein, MJ0208 family. T	99.91
COG1036	187	Archaeal flavoproteins [Energy production and conv	99.8
TIGR02536	207	eut_hyp ethanolamine utilization protein. This fam	98.3
PF06258	311	Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP	87.94
PF03033	139	Glyco_transf_28: Glycosyltransferase family 28 N-t	83.99
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	81.27

>PLN02496 probable phosphopantothenoylcysteine decarboxylase

Probab=100.00  E-value=1.4e-59  Score=392.84  Aligned_cols=207  Identities=89%  Similarity=1.424  Sum_probs=193.8

Q ss_pred             CCCCcchhhhhhccCCCCCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEecccHHHHhccccCCCCCeeEecccccccc
Q 028199            5 EPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATW   84 (212)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~~   84 (212)
                      ||-|-.-++|-++.+.+++||++|+|||+++||++++++.|++|++|+|+||++|.+|++++.|....++|+|.++|+.|
T Consensus         2 ~~~~~~~~~~~~~~~~~~k~IllgVtGSIAAyk~~~lvr~L~~g~~V~VvmT~~A~~FI~p~~l~~~~~v~td~~~~~~~   81 (209)
T PLN02496          2 EPLSPEVDAMEVNTAPRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVVTKASLHFIDRASLPKDVTLYTDEDEWSSW   81 (209)
T ss_pred             CCcCCCccchhhccCCCCCEEEEEEeCHHHHHHHHHHHHHhcCCCeEEEEEChhHhhhcCHHHcCCCCcEEeCccccccc
Confidence            56666778899999999999999999999999999999999888999999999999999999987545789998888777


Q ss_pred             ccCCCccccccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHC
Q 028199           85 NKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDEL  164 (212)
Q Consensus        85 ~~~~~~~~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~  164 (212)
                      +..+.+.+|++|.+|||+|||+|||+|||||+|+|||||++++++++++.++|++++|+||+.||+||++|+||++|+++
T Consensus        82 ~~~~~~~~HI~La~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~  161 (209)
T PLN02496         82 NKIGDSVLHIELRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDEL  161 (209)
T ss_pred             ccCCCCcchhHhhhhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHC
Confidence            66667889999999999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             CCEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhhcCCCCCCCCCC
Q 028199          165 GISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKV  211 (212)
Q Consensus       165 G~~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~~~l~~~~~~  211 (212)
                      |++|++|..|.++||++|.|||+++++|++.+..+++.+++++++-|
T Consensus       162 G~~vi~P~~g~lAcg~~G~Grm~ep~~I~~~i~~~l~~~~~~~~~~~  208 (209)
T PLN02496        162 GISLIPPVTKRLACGDYGNGAMAEPSLIYSTVRLFLESRAQSQSGGV  208 (209)
T ss_pred             CCEEECCCcCcccCCCcCCCCCCCHHHHHHHHHHHHhhccccccCCC
Confidence            99999999999999999999999999999999999999999998865

>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated

Probab=100.00  E-value=1.6e-53  Score=351.31  Aligned_cols=175  Identities=37%  Similarity=0.500  Sum_probs=161.3

Q ss_pred             CeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCcccccccccc
Q 028199           23 PRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIELRRW   99 (212)
Q Consensus        23 ~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~~l~~~   99 (212)
                      |||++|+|||+++++++++++.|++ |++|+|++|++|++|++++.++  ++++++++...+.    .....+|+++.+|
T Consensus         2 k~Ill~vtGsiaa~~~~~li~~L~~~g~~V~vv~T~~A~~fi~~~~l~~l~~~~v~~~~~~~~----~~~~~~hi~l~~~   77 (182)
T PRK07313          2 KNILLAVSGSIAAYKAADLTSQLTKRGYQVTVLMTKAATKFITPLTLQVLSKNPVHLDVMDEH----DPKLMNHIELAKR   77 (182)
T ss_pred             CEEEEEEeChHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHcCHHHHHHHhCCceEecccccc----ccCCccccccccc
Confidence            6899999999999999999999986 9999999999999999988765  5678888753322    1235689999999


Q ss_pred             ccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccC
Q 028199          100 ADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACG  179 (212)
Q Consensus       100 aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~la~g  179 (212)
                      +|+|||+|||+|||||+|+||+|||+++++.+++.++|++++|+||+.||.||++++|+++|+++|++|++|.+|+++||
T Consensus        78 aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~~  157 (182)
T PRK07313         78 ADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACG  157 (182)
T ss_pred             cCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccC
Confidence            99999999999999999999999999998888888999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHHHhhc
Q 028199          180 DYGNGAMAEPSLIYSTVRLFAE  201 (212)
Q Consensus       180 ~~g~g~~~~~~~i~~~v~~~~~  201 (212)
                      ++|||+|+++|+|++++.++++
T Consensus       158 ~~g~g~~~~~~~i~~~v~~~~~  179 (182)
T PRK07313        158 DEGYGALADIETILETIENTLK  179 (182)
T ss_pred             CccCCCCCCHHHHHHHHHHHhc
Confidence            9999999999999999998875

>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal

Probab=100.00  E-value=5.9e-53  Score=346.59  Aligned_cols=173  Identities=35%  Similarity=0.542  Sum_probs=157.5

Q ss_pred             CeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCcccccccccc
Q 028199           23 PRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIELRRW   99 (212)
Q Consensus        23 ~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~~l~~~   99 (212)
                      |||+||+|||+++++++++++.|++ |++|++++|++|++|++++.++  ++++++++.  |..+  ......|+++.+|
T Consensus         1 k~I~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~~~~l~~l~~~~v~~~~--~~~~--~~~~~~hi~l~~~   76 (177)
T TIGR02113         1 KKILLAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFITPLTLQVLSKNPVHLDV--MDEH--DPKVINHIELAKK   76 (177)
T ss_pred             CEEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhccHhhHHHHhCCCeEeec--cccc--cCCCcccceechh
Confidence            5899999999999999999999986 8999999999999999988765  567777763  2111  1234679999999


Q ss_pred             ccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccC
Q 028199          100 ADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACG  179 (212)
Q Consensus       100 aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~la~g  179 (212)
                      +|+|||+|||+|||||+|+||+|||+++++++++.++|++++|+||+.||+||++|+|+++|+++|++|++|..|.++||
T Consensus        77 aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~g~la~g  156 (177)
T TIGR02113        77 ADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKESLLACG  156 (177)
T ss_pred             hCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCcCcccCC
Confidence            99999999999999999999999999998889888999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHHHh
Q 028199          180 DYGNGAMAEPSLIYSTVRLF  199 (212)
Q Consensus       180 ~~g~g~~~~~~~i~~~v~~~  199 (212)
                      ++|.|||+++++|++++++.
T Consensus       157 ~~g~g~~~~~~~i~~~~~~~  176 (177)
T TIGR02113       157 DYGRGALADLDDILQTIKEI  176 (177)
T ss_pred             CccccCCCCHHHHHHHHHHh
Confidence            99999999999999999764

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.

>KOG0672 consensus Halotolerance protein HAL3 (contains flavoprotein domain) [Inorganic ion transport and metabolism; Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.4e-51  Score=334.47  Aligned_cols=192  Identities=54%  Similarity=0.864  Sum_probs=177.7

Q ss_pred             hhhhhhccCCCCCeEEEEeeChhHHHHHHHHHHHhhc--C---CeEEEEecccHHHHhccccCCCCCeeEeccccccccc
Q 028199           11 REAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSE--W---AEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWN   85 (212)
Q Consensus        11 ~~~~~~~~~~~~~kilv~vTGs~~a~~~~~li~~L~~--g---~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~~~   85 (212)
                      |.-+-.....++.+||+|.|||++++|++.+++.|.+  |   ..|+|++|++|.+|+..+.+.....+|+|.++|..|+
T Consensus         9 ~~~~~~~~~d~K~hvL~gaTGSvA~iK~~~li~kL~ei~G~dki~iqvvvT~~a~~f~~~~~l~~~v~~~~d~DeW~~W~   88 (218)
T KOG0672|consen    9 RTDKEVPQDDGKFHVLLGATGSVAVIKLPLLIKKLEEIYGRDKISIQVVVTKSATHFLEKLKLNKHVQLYTDEDEWKMWK   88 (218)
T ss_pred             CcCccccCCCCceeEEEEeccccceeehHHHHHHHHHhcCCcceeEEEEEechHHHHHhhcccccceeeecChHHhhhhh
Confidence            4444455567788999999999999999999999965  4   4799999999999999888877788999999999999


Q ss_pred             cCCCccccccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHH--
Q 028199           86 KIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDE--  163 (212)
Q Consensus        86 ~~~~~~~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~--  163 (212)
                      ..+.|+-|++|.+|||+++|||.||||+||+|+||||||+|+++|||+..+|++++|+||+.||+||.+++|+..|++  
T Consensus        89 ~r~dpVLHIeLRrWADilliAPLsANTlaKiA~GlCDNLLTsviRAW~~skPil~aPaMnT~mw~np~T~~hl~~l~~~~  168 (218)
T KOG0672|consen   89 SRSDPVLHIELRRWADILLIAPLSANTLAKIANGLCDNLLTSVIRAWDPSKPILLAPAMNTLMWNNPMTKKHLTSLKEEY  168 (218)
T ss_pred             hcCCceeeehHhhhhhhheecccCcchHHHHHhhhhhHHHHHHHHHhccCCceEeccchhhhhhcCcchHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999984  


Q ss_pred             CCCEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhhcC
Q 028199          164 LGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAES  202 (212)
Q Consensus       164 ~G~~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~  202 (212)
                      .|+++++|+.+.+.|||+|.|.|++|.+|++.|+..+..
T Consensus       169 ~~~~~i~pieK~licGDiGlG~Mae~~~IV~~V~~~~~~  207 (218)
T KOG0672|consen  169 PGITVIKPIEKVLICGDIGLGGMAEWGTIVSKVRRKLGE  207 (218)
T ss_pred             CCcEEecchheeEeccccCccccccHHHHHHHHHHHHhc
Confidence            699999999999999999999999999999999866653

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=100.00  E-value=6.4e-50  Score=364.50  Aligned_cols=186  Identities=38%  Similarity=0.608  Sum_probs=169.1

Q ss_pred             CCCCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCcccccc
Q 028199           19 GLRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIE   95 (212)
Q Consensus        19 ~~~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~~   95 (212)
                      .++++||+||+|||+++++++++++.|++ |++|+|++|++|.+|++++.++  ++++||++.  |..  ..+.+.+|++
T Consensus         3 ~l~~k~IllgvTGsiaa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~~l~~l~~~~V~~~~--~~~--~~~~~~~hi~   78 (399)
T PRK05579          3 MLAGKRIVLGVSGGIAAYKALELVRRLRKAGADVRVVMTEAAKKFVTPLTFQALSGNPVSTDL--WDP--AAEAAMGHIE   78 (399)
T ss_pred             CCCCCeEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhHHHHHHhhCCceEccc--ccc--ccCCCcchhh
Confidence            35678999999999999999999999986 9999999999999999999876  567888763  321  1223578999


Q ss_pred             ccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcc
Q 028199           96 LRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKR  175 (212)
Q Consensus        96 l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~  175 (212)
                      +.+|+|+|||||||+|||||+|+||||||+++++.+.  ++|++++|+||+.||+||++++|+++|+++|++|++|.+|+
T Consensus        79 l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~--~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~  156 (399)
T PRK05579         79 LAKWADLVLIAPATADLIAKLAHGIADDLLTTTLLAT--TAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGR  156 (399)
T ss_pred             cccccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhc--CCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCcc
Confidence            9999999999999999999999999999999988774  89999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCChHHHHHHHHHhhcCCCCCCCCC
Q 028199          176 LACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGK  210 (212)
Q Consensus       176 la~g~~g~g~~~~~~~i~~~v~~~~~~~~l~~~~~  210 (212)
                      |+||++|.|||+++++|++++.+.+..++|+||+-
T Consensus       157 la~~~~g~gr~~~~~~I~~~~~~~~~~~~l~gk~v  191 (399)
T PRK05579        157 LACGDVGPGRMAEPEEIVAAAERALSPKDLAGKRV  191 (399)
T ss_pred             ccCCCcCCCCCCCHHHHHHHHHHHhhhcccCCCEE
Confidence            99999999999999999999999887788999863

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=100.00  E-value=7e-50  Score=369.38  Aligned_cols=187  Identities=34%  Similarity=0.518  Sum_probs=169.3

Q ss_pred             cCCCCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCccccc
Q 028199           18 TGLRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHI   94 (212)
Q Consensus        18 ~~~~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~   94 (212)
                      +.+.+|||++|+|||+++||++++++.|++ |++|+|+||++|.+|++++.++  ++++||+|.  |..  .....++|+
T Consensus        66 ~~l~~k~IllgVtGsIAayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~~~~~ls~~~V~~d~--~~~--~~~~~~~Hi  141 (475)
T PRK13982         66 ASLASKRVTLIIGGGIAAYKALDLIRRLKERGAHVRCVLTKAAQQFVTPLTASALSGQRVYTDL--FDP--ESEFDAGHI  141 (475)
T ss_pred             cccCCCEEEEEEccHHHHHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHHHHHHhcCCceEecC--CCc--ccccCccch
Confidence            457789999999999999999999999986 9999999999999999998875  678899774  211  111247899


Q ss_pred             cccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCc
Q 028199           95 ELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSK  174 (212)
Q Consensus        95 ~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g  174 (212)
                      ++.+|+|+|||||||+|||||+|+||||||+++++++  .++|++++|+||+.||+||++|+|+++|+++|++|++|..|
T Consensus       142 ~la~~aD~~vVAPATANTIAKiA~GiADnLlt~v~La--~~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi~P~~g  219 (475)
T PRK13982        142 RLARDCDLIVVAPATADLMAKMANGLADDLASAILLA--ANRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNAG  219 (475)
T ss_pred             hhhhhcCEEEEeeCCHHHHHHHHccccCcHHHHHHHh--cCCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEECCCCC
Confidence            9999999999999999999999999999999988877  58999999999999999999999999999999999999999


Q ss_pred             ccc-cCCCCCCCCCChHHHHHHHHHhhcC---CCCCCCCC
Q 028199          175 RLA-CGDYGNGAMAEPSLIYSTVRLFAES---RNQSGDGK  210 (212)
Q Consensus       175 ~la-~g~~g~g~~~~~~~i~~~v~~~~~~---~~l~~~~~  210 (212)
                      .++ ||++|.|||++|++|++++.+++..   ++|+|||-
T Consensus       220 ~lA~~g~~G~Grm~e~~~I~~~v~~~~~~~~~~~l~gkkv  259 (475)
T PRK13982        220 EMAERGEAGVGRMAEPLEIAAAAEALLRPPQPKPLAGRRV  259 (475)
T ss_pred             ccccCCCcCCCCCCCHHHHHHHHHHHHhhccccccCCCEE
Confidence            999 7999999999999999999988854   67999974

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=100.00  E-value=1.9e-47  Score=347.27  Aligned_cols=184  Identities=35%  Similarity=0.574  Sum_probs=164.1

Q ss_pred             CCCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCccccccc
Q 028199           20 LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIEL   96 (212)
Q Consensus        20 ~~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~~l   96 (212)
                      ++++||+||+|||+++++++++++.|++ |++|+|++|++|.+|++++.++  ++++++++.  |..   ......|+++
T Consensus         1 l~~k~IllgiTGSiaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~~l~~~~~~~v~~~~--~~~---~~~~~~hi~l   75 (390)
T TIGR00521         1 LENKKILLGVTGGIAAYKTVELVRELVRQGAEVKVIMTEAAKKFITPLTLEALSGHKVVTEL--WGP---IEHNALHIDL   75 (390)
T ss_pred             CCCCEEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHHHHHHHHhhCCceeehh--ccc---cccccchhhc
Confidence            3578999999999999999999999986 9999999999999999999776  466777663  321   1111229999


Q ss_pred             cccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCccc
Q 028199           97 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRL  176 (212)
Q Consensus        97 ~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~l  176 (212)
                      .+|+|+|||+|||+|||||+|+||||||+++++.+.  .+|++++|+||..||+||++++|+++|++.|++|++|.+|+|
T Consensus        76 ~~~aD~~vVaPaTanTlaKiA~GiaDnLlt~~~~~~--~~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~  153 (390)
T TIGR00521        76 AKWADLILIAPATANTISKIAHGIADDLVSTTALAA--SAPIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLL  153 (390)
T ss_pred             ccccCEEEEecCCHHHHHHHHcccCCcHHHHHHHHh--CCCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCccc
Confidence            999999999999999999999999999999887774  389999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCChHHHHHHHHHhhcC-CCCCCCCC
Q 028199          177 ACGDYGNGAMAEPSLIYSTVRLFAES-RNQSGDGK  210 (212)
Q Consensus       177 a~g~~g~g~~~~~~~i~~~v~~~~~~-~~l~~~~~  210 (212)
                      +||++|.|+|+++++|++++.+.+.. ++|+||+-
T Consensus       154 ac~~~g~g~~~~~~~i~~~v~~~~~~~~~~~~~~v  188 (390)
T TIGR00521       154 ACGDEGKGRLAEPETIVKAAEREFSPKEDLEGKRV  188 (390)
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHhhccccCCceE
Confidence            99999999999999999999988875 78999873

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed

Probab=100.00  E-value=6.2e-41  Score=278.51  Aligned_cols=172  Identities=20%  Similarity=0.184  Sum_probs=141.5

Q ss_pred             CCCCeEEEEeeChhHHHH-HHHHHHHhhc-CCeEEEEecccHHHHhccc--------cCC--CCCeeEeccccccccccC
Q 028199           20 LRKPRILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKSSLHFIDRA--------ALP--KDVIFYTDEDEWATWNKI   87 (212)
Q Consensus        20 ~~~~kilv~vTGs~~a~~-~~~li~~L~~-g~~V~vvlT~sA~~~i~~~--------~l~--~~~~v~~d~~~~~~~~~~   87 (212)
                      ++++||++|+|||+++|| ++++++.|++ |++|++++|++|.+|+.+.        .++  ++++++++.  |      
T Consensus         3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~~~~~~~~~~~~~l~~ls~~~v~~~~--~------   74 (196)
T PRK08305          3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDTRFGKAEEWIKKIEEITGNKVINTI--V------   74 (196)
T ss_pred             CCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHhhhcCChHHHHHHHHHHHCCCcEEec--C------
Confidence            467899999999999999 7999999986 9999999999999998642        122  345566542  1      


Q ss_pred             CCccccccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHh-hcCCCcEEEEeccChhhhhChHHHHHHHHHHH-CC
Q 028199           88 GDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRA-WDYNKPLFVAPAMNTFMWNNPFTERHLMSIDE-LG  165 (212)
Q Consensus        88 ~~~~~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a-~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~-~G  165 (212)
                        ..+|+++.+|+|+|||||||+|||||+|+|||||++++++.+ ++.++|++++|+||+.||+||   +|+++|++ .|
T Consensus        75 --~~~~isls~~aD~mvIAPaSanTLAKiA~GiaDnll~~aa~a~lke~~PvvlaPAMN~~M~~~~---~ni~~L~~~~g  149 (196)
T PRK08305         75 --EAEPLGPKKLLDCMVIAPCTGNTMAKLANAITDSPVLMAAKATLRNQRPVVLAISTNDALGLNA---KNLGRLLNTKN  149 (196)
T ss_pred             --CCccCccccccCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcCCCCEEEEECCCHHHHhCH---HHHHHHHhcCC
Confidence              145788999999999999999999999999999999987655 678999999999999999997   99999985 89


Q ss_pred             CEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhhcCCCCC
Q 028199          166 ISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQS  206 (212)
Q Consensus       166 ~~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~~~l~  206 (212)
                      ++|+|=  |.-.|+.--++-..+++.+.++++++++++|||
T Consensus       150 ~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (196)
T PRK08305        150 IYFVPF--GQDDPVKKPNSLVARMDLLIDTVEEALEGKQLQ  188 (196)
T ss_pred             EEEEec--CCCCCCCCchhHHhhHHhhHHHHHHHHhCCccc
Confidence            999862  111121111455679999999999999999987

>PRK05920 aromatic acid decarboxylase; Validated

Probab=100.00  E-value=4.9e-40  Score=275.04  Aligned_cols=164  Identities=23%  Similarity=0.226  Sum_probs=139.9

Q ss_pred             CCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCcccccccc
Q 028199           21 RKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIELR   97 (212)
Q Consensus        21 ~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~~l~   97 (212)
                      +++||++|+|||++++|++++++.|++ |++|++++|++|++|++++.+.  ...+++++. .|..+  ......|+++.
T Consensus         2 ~~krIllgITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~~~~~~l~~~~v~~~~-~~~~~--~~~~~~hi~l~   78 (204)
T PRK05920          2 KMKRIVLAITGASGAIYGVRLLECLLAADYEVHLVISKAAQKVLATETGLKLPAVPDLAEA-FLREQ--LGAAAGQLRVH   78 (204)
T ss_pred             CCCEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHHHHHhCCCCCCCeeecch-hhhhc--cccccCceeEc
Confidence            468999999999999999999999986 9999999999999999987665  345677663 12211  11234555553


Q ss_pred             -------------ccccEEEEccCCHHHHHHHHccccCcHHHHHH-HhhcCCCcEEEEeccChhhhhChHHHHHHHHHHH
Q 028199           98 -------------RWADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDE  163 (212)
Q Consensus        98 -------------~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~  163 (212)
                                   +|+|+|||+|||+|||||+|+||||||+++++ .+++.++|++++|+   .||.||++++|+++|++
T Consensus        79 ~~~d~~a~~~sgs~~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L~~~~pvvi~P~---~m~~~~~~~~nl~~L~~  155 (204)
T PRK05920         79 GKDDWGAPIASGSFRTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVLKERRKLILVPR---ETPLSLIHLENMLKLAE  155 (204)
T ss_pred             ccccccCccccCccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeC---CCCCCHHHHHHHHHHHH
Confidence                         59999999999999999999999999999755 45668999999997   48999999999999999


Q ss_pred             CCCEEeCCCCcccccCCCCCCCCCChHHHHHHHH
Q 028199          164 LGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR  197 (212)
Q Consensus       164 ~G~~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~  197 (212)
                      .|++|++|++|+       |+++.+.+++++|+.
T Consensus       156 ~G~~ii~P~~g~-------y~~p~~~~~~~~f~~  182 (204)
T PRK05920        156 AGAIILPAIPAF-------YHKPQTIDDLVDFVV  182 (204)
T ss_pred             CCCEEeCCcccc-------cCCCCCHHHHHHHHH
Confidence            999999999999       899999999999984

>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional

Probab=100.00  E-value=4.9e-40  Score=271.45  Aligned_cols=155  Identities=23%  Similarity=0.200  Sum_probs=131.3

Q ss_pred             CeEEEEeeChhHHHHHHHHHHHhhc--CCeEEEEecccHHHHhcccc-C-----C-CCCeeEeccccccccccCCCcccc
Q 028199           23 PRILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATKSSLHFIDRAA-L-----P-KDVIFYTDEDEWATWNKIGDSVLH   93 (212)
Q Consensus        23 ~kilv~vTGs~~a~~~~~li~~L~~--g~~V~vvlT~sA~~~i~~~~-l-----~-~~~~v~~d~~~~~~~~~~~~~~~h   93 (212)
                      +||++|+|||+++||++++++.|++  |++|+|++|++|.+|++++. +     . -..+++.+.+       .   ..|
T Consensus         2 k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~~~~~~~~~~~~l~~~v~~~~~-------~---~~~   71 (185)
T PRK06029          2 KRLIVGISGASGAIYGVRLLQVLRDVGEIETHLVISQAARQTLAHETDFSLRDVQALADVVHDVRD-------I---GAS   71 (185)
T ss_pred             CEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHHHHCCChhhHHHhcCcccChhh-------c---ccC
Confidence            6899999999999999999999976  79999999999999999872 1     1 0122332211       1   135


Q ss_pred             cccc-ccccEEEEccCCHHHHHHHHccccCcHHHHHH-HhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCC
Q 028199           94 IELR-RWADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPP  171 (212)
Q Consensus        94 ~~l~-~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P  171 (212)
                      ++.. .|+|+|||+|||+|||||+|+||||||+++++ .++..++|++++|+   .||+||++|+|+++|++.|+.|++|
T Consensus        72 i~~~s~~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~---~M~~~p~~~~Nl~~L~~~G~~vi~P  148 (185)
T PRK06029         72 IASGSFGTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVR---ETPLHLGHLRNMTKLAEMGAIIMPP  148 (185)
T ss_pred             hhhcCchhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEec---cccCCHHHHHHHHHHHHCcCEEECC
Confidence            5553 59999999999999999999999999999744 34557999999996   6999999999999999999999999


Q ss_pred             CCcccccCCCCCCCCCChHHHHHHHH
Q 028199          172 VSKRLACGDYGNGAMAEPSLIYSTVR  197 (212)
Q Consensus       172 ~~g~la~g~~g~g~~~~~~~i~~~v~  197 (212)
                      .+|+       |.++.+.+|+++|+.
T Consensus       149 ~~g~-------~a~p~~~~~~~~~~v  167 (185)
T PRK06029        149 VPAF-------YHRPQTLEDMVDQTV  167 (185)
T ss_pred             Cccc-------ccCCCCHHHHHHHHH
Confidence            9999       899999999999985

>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]

Probab=100.00  E-value=2.3e-39  Score=294.51  Aligned_cols=182  Identities=38%  Similarity=0.569  Sum_probs=165.3

Q ss_pred             CCCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCccccccc
Q 028199           20 LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIEL   96 (212)
Q Consensus        20 ~~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~~l   96 (212)
                      +.+|+|+|++|||+++||.+++++.|.+ |++|+|+||++|.+|++|+.++  +++++++ .  |.  +..+..++|++|
T Consensus         2 l~~k~ill~v~gsiaayk~~~l~r~L~~~ga~v~vvmt~~a~~fv~p~~~~~~s~~~v~t-~--~~--~~~~~~~~HI~l   76 (392)
T COG0452           2 LEGKRILLGVTGSIAAYKSVELVRLLRRSGAEVRVVMTESARKFITPLTFQALSGNPVYT-L--LD--EELTGSVEHIEL   76 (392)
T ss_pred             CCCceEEEEecCchhhhhHHHHHHHHhhCCCeeEEEcchhhhhhcCcccHHHhhCCCccc-c--cc--ccccccccHhhh
Confidence            4567999999999999999999999986 9999999999999999999987  7888887 2  21  233456899999


Q ss_pred             cccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCccc
Q 028199           97 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRL  176 (212)
Q Consensus        97 ~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~l  176 (212)
                      ++|+|+++|+|+|+||++|+|+|++||++++++.++  ..|++++|+||..||+||++|+|+++|+..|+.++.|..|.+
T Consensus        77 ~~~adl~lvaPaTan~i~Kla~g~aD~~~t~~~~a~--~~p~~~aPamn~~M~~~~~tq~n~~~l~~~g~~~I~p~~~~~  154 (392)
T COG0452          77 ARWADLLLVAPATANTIAKLAVGIADNLSTTTLLAA--KAPLVLAPAMNVIMYTHPATQENLQRLKSEGVLFIEPIEGEL  154 (392)
T ss_pred             hhccCEEEecCCChhHHHHHHHhhhccHHHHHHHHh--cCcEEEecCcCHHHhhCHHHHHHHHHHHHCCcEEECcccccc
Confidence            999999999999999999999999999998877775  349999999999999999999999999999999999999998


Q ss_pred             ccCCCCCCCCCChHHHHHHHHHhhcCCCCCCCCC
Q 028199          177 ACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGK  210 (212)
Q Consensus       177 a~g~~g~g~~~~~~~i~~~v~~~~~~~~l~~~~~  210 (212)
                      +  +.|.|+|+++++|+..+...+..++|+||+-
T Consensus       155 a--~~g~g~~~e~~~Iv~~~~~~~~~~~l~gk~V  186 (392)
T COG0452         155 A--DVGDGRLAEPEEIVEAALALLKTPDLKGKKV  186 (392)
T ss_pred             c--ccccccCCCHHHHHHHHHhhcccccccCcEE
Confidence            8  8999999999999999998888778999874

>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases

Probab=100.00  E-value=3.2e-39  Score=266.01  Aligned_cols=158  Identities=22%  Similarity=0.207  Sum_probs=130.7

Q ss_pred             eEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhcccc-C--CCCCeeEeccccccccccCCCcccccc-ccc
Q 028199           24 RILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAA-L--PKDVIFYTDEDEWATWNKIGDSVLHIE-LRR   98 (212)
Q Consensus        24 kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~-l--~~~~~v~~d~~~~~~~~~~~~~~~h~~-l~~   98 (212)
                      ||++|+|||+++||++++++.|++ |++|+|++|++|++|++++. +  ..-..++++  .|.   . .+...|++ ..+
T Consensus         1 ~illgvtGsiaa~ka~~lir~L~~~g~~V~vv~T~~A~~fv~~e~~~~~~~l~~~~~~--~~~---~-~~~~~~i~~~s~   74 (181)
T TIGR00421         1 RIVVAMTGASGVIYGIRLLEVLKEAGVEVHLVISDWAKETIKYETDIDPGEVEELATK--YYD---A-DDFAAPIASGSF   74 (181)
T ss_pred             CEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECccHHHHHHHHHCCCHHHHHHHhhh--hCC---C-cccccccccCCc
Confidence            689999999999999999999986 99999999999999998653 1  100011111  110   0 11235665 368


Q ss_pred             cccEEEEccCCHHHHHHHHccccCcHHHHHH-HhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccc
Q 028199           99 WADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLA  177 (212)
Q Consensus        99 ~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~la  177 (212)
                      |+|+|||+|||+|||||+|+||||||+++++ .++..++|++++|+   .||.||++|+|+++|+++|++|++|++|+  
T Consensus        75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~---~m~~~~~~~~Nl~~L~~~G~~ii~P~~g~--  149 (181)
T TIGR00421        75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPR---ETPLNSIHLENMLRLSRMGAIILPPMPAF--  149 (181)
T ss_pred             hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeC---CCcCCHHHHHHHHHHHHCCCEEECCCCcc--
Confidence            9999999999999999999999999999854 35668999999996   88999999999999999999999999999  


Q ss_pred             cCCCCCCCCCChHHHHHHHH
Q 028199          178 CGDYGNGAMAEPSLIYSTVR  197 (212)
Q Consensus       178 ~g~~g~g~~~~~~~i~~~v~  197 (212)
                           |+++.+++++++|+.
T Consensus       150 -----~~~p~~~~~~~~~i~  164 (181)
T TIGR00421       150 -----YTRPKSVEDMIDFIV  164 (181)
T ss_pred             -----cCCCCCHHHHHHHHH
Confidence                 999999999888884

In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.

>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit

Probab=100.00  E-value=5.4e-38  Score=259.43  Aligned_cols=164  Identities=23%  Similarity=0.229  Sum_probs=134.9

Q ss_pred             CeEEEEeeChhHHHHHH-HHHHHhhc-CCeEEEEecccHHHHhccc--------cCC--CCCeeEeccccccccccCCCc
Q 028199           23 PRILLAASGSVAAIKFG-NLCHCFSE-WAEVRAVATKSSLHFIDRA--------ALP--KDVIFYTDEDEWATWNKIGDS   90 (212)
Q Consensus        23 ~kilv~vTGs~~a~~~~-~li~~L~~-g~~V~vvlT~sA~~~i~~~--------~l~--~~~~v~~d~~~~~~~~~~~~~   90 (212)
                      +||++|+|||+++++++ ++++.|++ |++|++++|++|.++.+..        .++  ++++++++..++         
T Consensus         1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~~~~~~g~~~~~i~~l~~~tg~~v~~~~~~~---------   71 (187)
T TIGR02852         1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQTTDTRFGKGADWIKKIEEITGRPAINTIVEA---------   71 (187)
T ss_pred             CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHHHHHHcCChHHHHHHHHHHHCCCCEEECCCC---------
Confidence            58999999999999997 99999986 9999999999999655531        122  345555543111         


Q ss_pred             cccccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhh-cCCCcEEEEeccChhhhhChHHHHHHHHHH-HCCCEE
Q 028199           91 VLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAW-DYNKPLFVAPAMNTFMWNNPFTERHLMSID-ELGISL  168 (212)
Q Consensus        91 ~~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~-~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~-~~G~~v  168 (212)
                       +.++..+|+|+|||||||+|||||+|+||+|||+++++.++ +.++|++++|+||+.||+|+   +|+++|. .+|++|
T Consensus        72 -~~~~~s~~~D~mVIaPcTanTLAKiA~GiaDnlv~~aa~a~Lke~rPlvlaPamN~~m~~~~---~Ni~~L~~~~g~~~  147 (187)
T TIGR02852        72 -EPFGPKVPLDCMVIAPLTGNSMSKLANAMTDSPVLMAAKATLRNNKPVVLAISTNDALGLNA---VNLMRLLNTKNIYF  147 (187)
T ss_pred             -cccCCchhhCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcCCCCEEEEECcCHHHHhCH---HHHHHHHHcCCEEE
Confidence             11233579999999999999999999999999999877665 78999999999999999997   9999985 899999


Q ss_pred             eC-----CCCcccccCCCCCCCCCChHHHHHHHHHhhcCCCCC
Q 028199          169 IP-----PVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQS  206 (212)
Q Consensus       169 v~-----P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~~~l~  206 (212)
                      ||     |..+.       ++-.++++.|.+++.++++++|+|
T Consensus       148 v~f~qd~~~~k~-------~s~~~~~~~~~~~~~~a~~~~q~q  183 (187)
T TIGR02852       148 VPFGQDDPFKKP-------NSLVAKMDYLIPTIEEALQGRQLQ  183 (187)
T ss_pred             EeecCCCCCCCc-------hhHHhhHHhhHHHHHHHHhCCCcC
Confidence            97     33333       466789999999999999999987

Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.

>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []

Probab=100.00  E-value=3e-36  Score=235.23  Aligned_cols=127  Identities=49%  Similarity=0.744  Sum_probs=107.8

Q ss_pred             CeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCCCCCeeEeccccccccccCCCcccccccccccc
Q 028199           23 PRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWAD  101 (212)
Q Consensus        23 ~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~~~~~~~~~~h~~l~~~aD  101 (212)
                      |||++++|||++++++++++++|++ |++|++++|++|.+|++++. ....+++.+   |..+ ......+|+++.+|+|
T Consensus         1 k~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~~-~~~~~v~~~---~~~~-~~~~~~~~~~~~~~~D   75 (129)
T PF02441_consen    1 KRILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLSPSAERFVTPEG-LTGEPVYTD---WDTW-DRGDPAEHIELSRWAD   75 (129)
T ss_dssp             -EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEESHHHHHHSHHHG-HCCSCEECT---HCTC-STTTTTCHHHHHHTES
T ss_pred             CEEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEECCcHHHHhhhhc-cccchhhhc---cccC-CCCCCcCcccccccCC
Confidence            6999999999999999999999987 89999999999999999988 345677766   2111 1234678999999999


Q ss_pred             EEEEccCCHHHHHHHHccccCcHHHHHHHhh-cCCCcEEEEeccChhhhhChHH
Q 028199          102 IMVIAPLSANTLGKIAGGLCDNLLTCIVRAW-DYNKPLFVAPAMNTFMWNNPFT  154 (212)
Q Consensus       102 ~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~-~~~~Pvvi~Pamn~~m~~~P~~  154 (212)
                      +|||+|||+||+||+|+||+||++++++.++ +.++|++++|+||+.||+||++
T Consensus        76 ~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvvi~P~mn~~m~~~p~t  129 (129)
T PF02441_consen   76 AMVVAPATANTLAKIANGIADNLLTRVALAALKEGKPVVIAPAMNPAMWENPIT  129 (129)
T ss_dssp             EEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEEEEEEESHHHHTSHHH
T ss_pred             EEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeEEEEeCCHHHHhCcCC
Confidence            9999999999999999999999999877665 6699999999999999999975

This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....

>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]

Probab=99.97  E-value=2.1e-30  Score=210.95  Aligned_cols=161  Identities=26%  Similarity=0.295  Sum_probs=133.3

Q ss_pred             CCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhcccc--CCCCCeeEeccccccccccCCCccccccccc
Q 028199           22 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAA--LPKDVIFYTDEDEWATWNKIGDSVLHIELRR   98 (212)
Q Consensus        22 ~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~--l~~~~~v~~d~~~~~~~~~~~~~~~h~~l~~   98 (212)
                      ++||++|+||++++.+..++++.|++ ++|+++++|++|.+.+..|.  ..+...+.......+..++++++++++++. 
T Consensus         2 ~~riivgisGASG~iygvrlLe~L~~~~~e~hlviS~~a~~~~~~E~~~~~~~~~~~~~a~~~~~~~D~~A~iASGS~~-   80 (191)
T COG0163           2 MKRIIVGISGASGAIYGVRLLEVLRELGVETHLVISKAAKKTLKYETGNDESLGEVLALADVVHDEKDIGAPIASGSFR-   80 (191)
T ss_pred             CcEEEEEEeccccHHHHHHHHHHHHhcCceEEEEEcHHHHHHHHHHhCcchhhHHHhhhcceecCHHHccCcccCCCCC-
Confidence            56899999999999999999999986 89999999999999988776  211111111111112234567788999975 


Q ss_pred             cccEEEEccCCHHHHHHHHccccCcHHHHHH-HhhcCCCcEEEEeccChhhhhChHHHHHHH---HHHHCCCEEeCCCCc
Q 028199           99 WADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPAMNTFMWNNPFTERHLM---SIDELGISLIPPVSK  174 (212)
Q Consensus        99 ~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~---~L~~~G~~vv~P~~g  174 (212)
                       .|.|+|+|||+.|+|+||+|++|||++.+. -+++.++|+|++|+      |.|....||+   +|.+.|++|+||.++
T Consensus        81 -~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~R------EtPl~~ihLeNMlkl~~~GaiI~Pp~Pa  153 (191)
T COG0163          81 -TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPR------ETPLSLIHLENMLKLAEMGAIIMPPMPA  153 (191)
T ss_pred             -cCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEec------cCCccHHHHHHHHHHHHCCCEecCCChh
Confidence             999999999999999999999999999754 45578999999999      9998777777   578899999999999


Q ss_pred             ccccCCCCCCCCCChHHHHHHHH
Q 028199          175 RLACGDYGNGAMAEPSLIYSTVR  197 (212)
Q Consensus       175 ~la~g~~g~g~~~~~~~i~~~v~  197 (212)
                      |       |.++.+.|||++|+.
T Consensus       154 F-------Y~~P~sieDlvd~~v  169 (191)
T COG0163         154 F-------YHKPQSIEDLVDFVV  169 (191)
T ss_pred             h-------hcCCCCHHHHHHHHH
Confidence            9       999999999999985

>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA

Probab=99.96  E-value=6.6e-29  Score=203.19  Aligned_cols=141  Identities=21%  Similarity=0.281  Sum_probs=108.6

Q ss_pred             eEEEEeeChhHHHH-HHHHHHHhh-c-CCeEEEEecccHHHHhccccC-C--CCCe--eEeccccccccccCCCcccccc
Q 028199           24 RILLAASGSVAAIK-FGNLCHCFS-E-WAEVRAVATKSSLHFIDRAAL-P--KDVI--FYTDEDEWATWNKIGDSVLHIE   95 (212)
Q Consensus        24 kilv~vTGs~~a~~-~~~li~~L~-~-g~~V~vvlT~sA~~~i~~~~l-~--~~~~--v~~d~~~~~~~~~~~~~~~h~~   95 (212)
                      ||+||+|||..... ..++++.|+ + |++|++++|++|.+|++++.+ +  .+..  ++.+. +   +..+ ....|+.
T Consensus         1 ~i~~gitGsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~~~~~~~l~~~~~~~~~~~-~---~~~p-~~sg~~~   75 (174)
T TIGR02699         1 RIAWGITGSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKWYKLWDKLENDFPNFRVEI-N---ANSP-FLAGQLQ   75 (174)
T ss_pred             CEEEEEEccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHHHHhHHHHhccCCcccccC-C---CCCc-cccCccc
Confidence            69999999955544 888999886 3 899999999999999987754 2  1111  22111 1   1111 1245777


Q ss_pred             ccccccEEEEccCCHHHHHHHHccccCcHHHHH-HHhhcCCCcEEEEeccCh------hhhhChHHH--------HHHHH
Q 028199           96 LRRWADIMVIAPLSANTLGKIAGGLCDNLLTCI-VRAWDYNKPLFVAPAMNT------FMWNNPFTE--------RHLMS  160 (212)
Q Consensus        96 l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~-~~a~~~~~Pvvi~Pamn~------~m~~~P~~~--------~nl~~  160 (212)
                      +. |+|+|+|+|||+||+||+|+||||||++++ +.+++.++|++++|+||.      .+-.+|.++        +|+++
T Consensus        76 l~-~~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi~P~mn~~~~v~t~~p~~~~~~~~~r~~d~~~~~~  154 (174)
T TIGR02699        76 MG-KYDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIMPSDYKEGTVKTALPSGRKLELRMRKVDVENVEK  154 (174)
T ss_pred             cc-ccCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEEEECcCCCCceeeccCCCCceeeeeccccHHHHHH
Confidence            75 689999999999999999999999999875 466688999999999974      355567777        99999


Q ss_pred             HHHC-CCEEeC
Q 028199          161 IDEL-GISLIP  170 (212)
Q Consensus       161 L~~~-G~~vv~  170 (212)
                      |+++ |++|+.
T Consensus       155 L~~~~gv~v~~  165 (174)
T TIGR02699       155 LAQMEGIEILT  165 (174)
T ss_pred             HhhCCCeEEEC
Confidence            9997 999985

The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.

>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family

Probab=99.91  E-value=3.2e-24  Score=183.18  Aligned_cols=117  Identities=21%  Similarity=0.306  Sum_probs=91.9

Q ss_pred             eEEEEeeChhHH-HHHHHHHHHhhc---CCeEEEEecccHHHHhcccc----CC--CCCeeEeccccccccccC-CC-cc
Q 028199           24 RILLAASGSVAA-IKFGNLCHCFSE---WAEVRAVATKSSLHFIDRAA----LP--KDVIFYTDEDEWATWNKI-GD-SV   91 (212)
Q Consensus        24 kilv~vTGs~~a-~~~~~li~~L~~---g~~V~vvlT~sA~~~i~~~~----l~--~~~~v~~d~~~~~~~~~~-~~-~~   91 (212)
                      ||+||+|||+.+ ++++++++.|++   |++|+|+||++|.+|++++.    |+  +++++|++.  |..-.+. .. ..
T Consensus         1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~   78 (234)
T TIGR02700         1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMYGLWDDLREISPGGYYEEV--FTESEEGASSPII   78 (234)
T ss_pred             CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhhhhHHHHHHHhCCCcchhc--cccccccccCCcc
Confidence            689999996555 789999999974   79999999999999999984    32  356677652  2100111 11 24


Q ss_pred             ccccccccccEEEEccCCHHHHHHHHccccCcHHHHHH-HhhcCCCcEEEEec
Q 028199           92 LHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPA  143 (212)
Q Consensus        92 ~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~Pa  143 (212)
                      .|+++.+ +|+|||+|||+|||||||+||+||++++.+ .+.+..+|++++|+
T Consensus        79 ~~i~~~~-~D~~vIaPaTantlakiA~GiaD~lit~t~~~~~k~~~pv~~vP~  130 (234)
T TIGR02700        79 GRFALGK-YDLLIVSPATANTVAKIAHGIADSLVTNAVAQAGKGDVPVWVVPV  130 (234)
T ss_pred             ceeeccc-cCEEEEecCChhHHHHHHccccchHHHHHHHHHhccCCCeEEEee
Confidence            6998874 899999999999999999999999998754 55567899999997

This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.

>COG1036 Archaeal flavoproteins [Energy production and conversion]

Probab=99.80  E-value=1.8e-19  Score=144.16  Aligned_cols=144  Identities=18%  Similarity=0.214  Sum_probs=105.9

Q ss_pred             CCCCCeEEEEeeChhHHHH-HHHHHHHhhc---CCeEEEEecccHHHHhccccCC-----CCCeeEeccccccccccCCC
Q 028199           19 GLRKPRILLAASGSVAAIK-FGNLCHCFSE---WAEVRAVATKSSLHFIDRAALP-----KDVIFYTDEDEWATWNKIGD   89 (212)
Q Consensus        19 ~~~~~kilv~vTGs~~a~~-~~~li~~L~~---g~~V~vvlT~sA~~~i~~~~l~-----~~~~v~~d~~~~~~~~~~~~   89 (212)
                      ...++||.||+||+..-+. .-++.+.+++   +++|.+++|++|.+++..+.|-     ....+..+..       ..+
T Consensus         5 ~~~~~rIaWgITGaG~~L~Et~~imk~lk~~~~~~~v~v~lSkageeVvk~YgL~~~l~~~~~~~~~e~~-------ans   77 (187)
T COG1036           5 EKKKKRIAWGITGAGHLLPETYQIMKELKKEYGDVEVDVFLSKAGEEVVKMYGLWDKLEKIFGGLEVEIG-------ANS   77 (187)
T ss_pred             ccccceEEEEEeccccccHHHHHHHHHHHhhcCCceEEEeehhhHHHHHHHHHHHHHHHHHcCCeEeecC-------CCC
Confidence            3456799999999965554 5556777764   3799999999999999877652     1111222211       112


Q ss_pred             c--cccccccccccEEEEccCCHHHHHHHHccccCcHHHH-HHHhhcCCCcEEEEeccCh--------------hhhhCh
Q 028199           90 S--VLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTC-IVRAWDYNKPLFVAPAMNT--------------FMWNNP  152 (212)
Q Consensus        90 ~--~~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~-~~~a~~~~~Pvvi~Pamn~--------------~m~~~P  152 (212)
                      |  ...+++. .+|+++|+|||+||+||||+||||+|+|+ +.+|.+...|++++|.-..              .|.-..
T Consensus        78 Pfi~GrlqlG-kYD~llvaPaTsNTvAKIa~GIADtLVTNAVaqa~Kg~VPvyivP~D~k~G~V~t~~~gGk~~el~vR~  156 (187)
T COG1036          78 PFIAGRLQLG-KYDFLLVAPATSNTVAKIAYGIADTLVTNAVAQAGKGKVPVYIVPVDYKEGTVETTLPGGKKLELRVRK  156 (187)
T ss_pred             Cceecceecc-cccEEEEcccccchHHHHHhhhHHHHHHHHHHHhcCCCCcEEEecccccCCeEEEcCCCCcEEEEEEee
Confidence            2  2345554 69999999999999999999999999998 5688788999999998653              244455


Q ss_pred             HHHHHHHHHHH-CCCEEeC
Q 028199          153 FTERHLMSIDE-LGISLIP  170 (212)
Q Consensus       153 ~~~~nl~~L~~-~G~~vv~  170 (212)
                      ...+|+++|++ .|+.|+.
T Consensus       157 vDvenv~kl~~megi~Vl~  175 (187)
T COG1036         157 VDVENVEKLAQMEGIEVLA  175 (187)
T ss_pred             cchHHHHHHHhccCeEEec
Confidence            67899999977 4887763

>TIGR02536 eut_hyp ethanolamine utilization protein

Probab=98.30  E-value=3e-06  Score=71.47  Aligned_cols=75  Identities=23%  Similarity=0.337  Sum_probs=59.8

Q ss_pred             ccccEEEEccCCHHHHHHHHccccCcHHHH-HHHhhcCCCcEEEEe-ccChhhhhC--h-----HHHHHHHHHHHCCCEE
Q 028199           98 RWADIMVIAPLSANTLGKIAGGLCDNLLTC-IVRAWDYNKPLFVAP-AMNTFMWNN--P-----FTERHLMSIDELGISL  168 (212)
Q Consensus        98 ~~aD~~vVaPaTaNtlaKiA~GiaDnllt~-~~~a~~~~~Pvvi~P-amn~~m~~~--P-----~~~~nl~~L~~~G~~v  168 (212)
                      +.+|.++|.=.|.|+++|+|+|++||+.++ ++.++-.++||+++= ++...-|.+  |     ..+.+.++|+++|+.|
T Consensus        52 ~~~dillv~~Lt~n~lskIAlGi~d~~~~~~I~~~LL~GK~V~v~~eg~e~~~y~~~~p~~l~~~~~~y~~kL~sfGIk~  131 (207)
T TIGR02536        52 KLADILLVSRLSIKELNNISHGQETNEKEKFIIAFLLEGKPIYILKPGIEYSKYENTAPYALKQKFQEYEEKLQSFGIEF  131 (207)
T ss_pred             hcCCEEEEccCCHHHHHHHHccCCCCHHHHHHHHHHHCCCeEEEEecccchhccCccCCHHHHHHHHHHHHHHHHcCeEE
Confidence            568999999999999999999999999887 567777899999883 222222233  2     4678899999999999


Q ss_pred             eCCC
Q 028199          169 IPPV  172 (212)
Q Consensus       169 v~P~  172 (212)
                      +...
T Consensus       132 ~~~~  135 (207)
T TIGR02536       132 IDSE  135 (207)
T ss_pred             eccc
Confidence            8753

This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.

>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins

Probab=87.94  E-value=19  Score=32.16  Aligned_cols=86  Identities=19%  Similarity=0.180  Sum_probs=55.9

Q ss_pred             ccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCC
Q 028199           94 IELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVS  173 (212)
Q Consensus        94 ~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~  173 (212)
                      .++..++|.++|-+=|.|.++               +|..+++||.+++--.    .+.-+++-++.|.+.|+.-.-...
T Consensus       223 ~~~La~ad~i~VT~DSvSMvs---------------EA~~tG~pV~v~~l~~----~~~r~~r~~~~L~~~g~~r~~~~~  283 (311)
T PF06258_consen  223 LGFLAAADAIVVTEDSVSMVS---------------EAAATGKPVYVLPLPG----RSGRFRRFHQSLEERGAVRPFTGW  283 (311)
T ss_pred             HHHHHhCCEEEEcCccHHHHH---------------HHHHcCCCEEEecCCC----cchHHHHHHHHHHHCCCEEECCCc
Confidence            456668999999876665544               4555799999997521    555788888999999875332221


Q ss_pred             cccccCCCC-CCCCCChHHHHHHHHHhh
Q 028199          174 KRLACGDYG-NGAMAEPSLIYSTVRLFA  200 (212)
Q Consensus       174 g~la~g~~g-~g~~~~~~~i~~~v~~~~  200 (212)
                      ..+.  ... |-.+-+-+.+.+.|.+.+
T Consensus       284 ~~~~--~~~~~~pl~et~r~A~~i~~r~  309 (311)
T PF06258_consen  284 RDLE--QWTPYEPLDETDRVAAEIRERL  309 (311)
T ss_pred             cccc--ccccCCCccHHHHHHHHHHHHh
Confidence            1011  122 556667777888776654

The function of this family is unknown.

>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=83.99  E-value=2.3  Score=32.12  Aligned_cols=44  Identities=25%  Similarity=0.318  Sum_probs=32.7

Q ss_pred             EEEEeeChhHHHH-HHHHHHHhhc-CCeEEEEecccHHHHhccccC
Q 028199           25 ILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKSSLHFIDRAAL   68 (212)
Q Consensus        25 ilv~vTGs~~a~~-~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l   68 (212)
                      |++...|+.+=.. ...+.++|++ ||||.+..++...+.+....+
T Consensus         1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl   46 (139)
T PF03033_consen    1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAGL   46 (139)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-
T ss_pred             CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccCc
Confidence            5677777776666 7789999985 999998888888888754444

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=81.27  E-value=26  Score=28.95  Aligned_cols=30  Identities=30%  Similarity=0.403  Sum_probs=25.9

Q ss_pred             CCcEEEEeccChhhhhChHH-HHHHHHHHHCCCEEeC
Q 028199          135 NKPLFVAPAMNTFMWNNPFT-ERHLMSIDELGISLIP  170 (212)
Q Consensus       135 ~~Pvvi~Pamn~~m~~~P~~-~~nl~~L~~~G~~vv~  170 (212)
                      +.++|+--+      .+|.+ .++-+.|++.|+.++|
T Consensus       107 ~~~~v~~~A------N~~~~~~~~~~~L~~~Gi~~~P  137 (200)
T cd01075         107 KAKAIAGAA------NNQLADPRHGQMLHERGILYAP  137 (200)
T ss_pred             CCCEEEECC------cCccCCHhHHHHHHHCCCEEeC
Confidence            568888888      77777 7999999999999997

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	212
1e20_A	209	The Fmn Binding Protein Athal3 Length = 209		1e-100
1mvl_A	209	Ppc Decarboxylase Mutant C175s Length = 209		5e-99
1qzu_A	206	Crystal Structure Of Human Phosphopantothenoylcyste		5e-44
3qjg_A	175	Epidermin Biosynthesis Protein Epid From Staphyloco		2e-13
1g63_A	181	Peptidyl-Cysteine Decarboxylase Epid Length = 181		9e-13
1p3y_1	194	Mrsd From Bacillus Sp. Hil-y85/54728 Length = 194		2e-12
1g5q_A	181	Epid H67n Complexed With Substrate Peptide Dsytc Le		7e-12

>pdb|1E20|A Chain A, The Fmn Binding Protein Athal3 Length = 209

Iteration: 1
 Score =  359 bits (922), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 164/200 (82%), Positives = 183/200 (91%)
Query: 10  DREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALP 69
           DR+ M+VNT  RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP
Sbjct: 7   DRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLP 66
Query: 70  KDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV 129
           ++V  YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+
Sbjct: 67  QEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCII 126
Query: 130 RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEP 189
           RAWDY KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLACGDYGNGAMAEP
Sbjct: 127 RAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEP 186
Query: 190 SLIYSTVRLFAESRNQSGDG 209
           SLIYSTVRLF ES+     G
Sbjct: 187 SLIYSTVRLFWESQAHQQTG 206

>pdb|1MVL|A Chain A, Ppc Decarboxylase Mutant C175s Length = 209

Iteration: 1
 Score =  356 bits (914), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 163/200 (81%), Positives = 182/200 (91%)
Query: 10  DREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALP 69
           DR+ M+VNT  RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP
Sbjct: 7   DRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLP 66
Query: 70  KDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV 129
           ++V  YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+
Sbjct: 67  QEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCII 126
Query: 130 RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEP 189
           RAWDY KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLA GDYGNGAMAEP
Sbjct: 127 RAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLASGDYGNGAMAEP 186
Query: 190 SLIYSTVRLFAESRNQSGDG 209
           SLIYSTVRLF ES+     G
Sbjct: 187 SLIYSTVRLFWESQAHQQTG 206

>pdb|1QZU|A Chain A, Crystal Structure Of Human Phosphopantothenoylcysteine Decarboxylase Length = 206

Iteration: 1
 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 116/190 (61%), Gaps = 6/190 (3%)
Query: 21  RKPRILLAASGSVAAIKFGNLCHCFSEWA--EVRAVATKSSLHFIDRAALPKDVIFYTDE 78
           RK  +L+  +GSVAA+K   L     +    EV  V T+ + HF     +P  V  Y+D 
Sbjct: 18  RKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDIP--VTLYSDA 75
Query: 79  DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
           DEW  W    D VLHI+LRRWAD++++APL ANTLGK+A G+CDNLLTC++RAWD +KPL
Sbjct: 76  DEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPL 135
Query: 139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR- 197
              PAMNT MW +P T + +  +   G   IP V+K+L CGD G GAMAE   I   V+ 
Sbjct: 136 LFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVKE 195
Query: 198 -LFAESRNQS 206
            LF  S  Q 
Sbjct: 196 VLFQHSGFQQ 205

>pdb|3QJG|A Chain A, Epidermin Biosynthesis Protein Epid From Staphylococcus Aureus Length = 175

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 10/148 (6%)
Query: 24  RILLAASGSVAAIKFGN-LCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWA 82
            +L+   GSV +I   + +    S++ EV  +A+ +   FI+   L +    Y DE E  
Sbjct: 7   NVLICLCGSVNSINISHYIIELKSKFDEVNVIASTNGRKFINGEILKQFCDNYYDEFEDP 66
Query: 83  TWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAP 142
             N       H+++    D ++I P ++NT+ KIA G+CDNLL  I       + L + P
Sbjct: 67  FLN-------HVDIANKHDKIIILPATSNTINKIANGICDNLLLTICHTAF--EKLSIFP 117
Query: 143 AMNTFMWNNPFTERHLMSIDELGISLIP 170
            MN  MW NP T+ ++  + + G+S+ P
Sbjct: 118 NMNLRMWENPVTQNNIRLLKDYGVSIYP 145

>pdb|1G63|A Chain A, Peptidyl-Cysteine Decarboxylase Epid Length = 181

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 21/169 (12%)
Query: 24  RILLAASGSVAAIKFGNLCHCFSE----WAEVRAVATKSSLHFIDRAALPKDVIFYTDED 79
           ++L+ A+ S+  I   N+ H   E    + EV  + + SS +FI+   L      + D  
Sbjct: 4   KLLICATASINVI---NINHYIVELKQHFDEVNILFSPSSKNFINTDVLK----LFCDN- 55
Query: 80  EWATWNKIGDSVL-HIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
               +++I D +L HI +    + +++ P SANT+ KIA G+CDNLLT +     Y K L
Sbjct: 56  ---LYDEIKDPLLNHINIVENHEYILVLPASANTINKIANGICDNLLTTVCLTG-YQK-L 110
Query: 139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPP---VSKRLACGDYGNG 184
           F+ P MN  MW NPF ++++  +    + +  P    S  ++ G Y N 
Sbjct: 111 FIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNKSFEISSGRYKNN 159

>pdb|1P3Y|1 Chain 1, Mrsd From Bacillus Sp. Hil-y85/54728 Length = 194

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 46  SEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVI 105
           S + E+R V TK++   I     P   + Y  +  ++   + G    H+E+ RWADI  I
Sbjct: 33  SFFKEIRVVMTKTAEDLI-----PAHTVSYFCDHVYSEHGENGKRHSHVEIGRWADIYCI 87
Query: 106 APLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELG 165
            P +AN LG+ A G+  NL+   V A  +N   F  P MN  MWN     R++  + + G
Sbjct: 88  IPATANILGQTANGVAMNLVATTVLAHPHNTIFF--PNMNDLMWNKTVVSRNIEQLRKDG 145
Query: 166 ISLIPPVS 173
             +I PV 
Sbjct: 146 HIVIEPVE 153

>pdb|1G5Q|A Chain A, Epid H67n Complexed With Substrate Peptide Dsytc Length = 181

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 21/169 (12%)
Query: 24  RILLAASGSVAAIKFGNLCHCFSE----WAEVRAVATKSSLHFIDRAALPKDVIFYTDED 79
           ++L+ A+ S+  I   N+ H   E    + EV  + + SS +FI+   L      + D  
Sbjct: 4   KLLICATASINVI---NINHYIVELKQHFDEVNILFSPSSKNFINTDVLK----LFCDN- 55
Query: 80  EWATWNKIGDSVLH-IELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
               +++I D +L+ I +    + +++ P SANT+ KIA G+CDNLLT +     Y K L
Sbjct: 56  ---LYDEIKDPLLNNINIVENHEYILVLPASANTINKIANGICDNLLTTVCLTG-YQK-L 110
Query: 139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPP---VSKRLACGDYGNG 184
           F+ P MN  MW NPF ++++  +    + +  P    S  ++ G Y N 
Sbjct: 111 FIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNKSFEISSGRYKNN 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
1mvl_A	209	PPC decarboxylase athal3A; flavoprotein, active si	1e-95
1qzu_A	206	Hypothetical protein MDS018; alpha-beta sandwich,	5e-78
1p3y_1	194	MRSD protein; flavoprotein, FMN, rossmann fold, HF	3e-49
3qjg_A	175	Epidermin biosynthesis protein EPID; structural ge	2e-47
1g63_A	181	Epidermin modifying enzyme EPID; alpha, beta prote	1e-46
3lqk_A	201	Dipicolinate synthase subunit B; flavoprotein, PSI	1e-33
3mcu_A	207	Dipicolinate synthase, B chain; NESG, structural g	1e-31
2ejb_A	189	Probable aromatic acid decarboxylase; phenylacryli	6e-20
3zqu_A	209	Probable aromatic acid decarboxylase; lyase; HET:	4e-15
1sbz_A	197	Probable aromatic acid decarboxylase; FMN binding,	4e-13

>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A* Length = 209

 Score =  276 bits (708), Expect = 1e-95
 Identities = 162/199 (81%), Positives = 181/199 (90%)

Query: 7   TSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRA 66
              DR+ M+VNT  RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ 
Sbjct: 4   GKRDRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKL 63

Query: 67  ALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLT 126
           +LP++V  YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLT
Sbjct: 64  SLPQEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLT 123

Query: 127 CIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAM 186
           CI+RAWDY KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLA GDYGNGAM
Sbjct: 124 CIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLASGDYGNGAM 183

Query: 187 AEPSLIYSTVRLFAESRNQ 205
           AEPSLIYSTVRLF ES+  
Sbjct: 184 AEPSLIYSTVRLFWESQAH 202

>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1 Length = 206

 Score =  231 bits (592), Expect = 5e-78
 Identities = 86/182 (47%), Positives = 112/182 (61%), Gaps = 4/182 (2%)

Query: 20  LRKPRILLAASGSVAAIKFGNLCHCFSEW--AEVRAVATKSSLHFIDRAALPKDVIFYTD 77
            RK  +L+  +GSVAA+K   L     +    EV  V T+ + HF     +P  V  Y+D
Sbjct: 17  ERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDIP--VTLYSD 74

Query: 78  EDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKP 137
            DEW  W    D VLHI+LRRWAD++++APL ANTLGK+A G+CDNLLTC++RAWD +KP
Sbjct: 75  ADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKP 134

Query: 138 LFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 197
           L   PAMNT MW +P T + +  +   G   IP V+K+L CGD G GAMAE   I   V+
Sbjct: 135 LLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVK 194

Query: 198 LF 199
             
Sbjct: 195 EV 196

>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1 Length = 194

 Score =  158 bits (401), Expect = 3e-49
 Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 18/194 (9%)

Query: 20  LRKPRILLAASGSVAAIKFGNLCHCFSEW-AEVRAVATKSSLHFID---RAALPKDVIFY 75
           L+  ++L+   GS++++   +    F  +  E+R V TK++   I     +     V   
Sbjct: 6   LKDKKLLIGICGSISSVGISSYLLYFKSFFKEIRVVMTKTAEDLIPAHTVSYFCDHVYSE 65

Query: 76  TDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYN 135
             E+             H+E+ RWADI  I P +AN LG+ A G+  NL+   V A  + 
Sbjct: 66  HGENGKR--------HSHVEIGRWADIYCIIPATANILGQTANGVAMNLVATTVLA--HP 115

Query: 136 KPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSK---RLACGDYGNG-AMAEPSL 191
                 P MN  MWN     R++  + + G  +I PV      +A G       +  P  
Sbjct: 116 HNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVEIMAFEIATGTRKPNRGLITPDK 175

Query: 192 IYSTVRLFAESRNQ 205
               +    + R +
Sbjct: 176 ALLAIEKGFKERTK 189

>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} Length = 175

 Score =  152 bits (387), Expect = 2e-47
 Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 20/185 (10%)

Query: 20  LRKPRILLAASGSVAAIKFGNLCHCFSEW-AEVRAVATKSSLHFID---RAALPKDVIFY 75
                +L+   GSV +I   +          EV  +A+ +   FI+         +    
Sbjct: 3   AMGENVLICLCGSVNSINISHYIIELKSKFDEVNVIASTNGRKFINGEILKQFCDNYYDE 62

Query: 76  TDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYN 135
            ++            + H+++    D ++I P ++NT+ KIA G+CDNLL  I       
Sbjct: 63  FEDPF----------LNHVDIANKHDKIIILPATSNTINKIANGICDNLLLTICHT--AF 110

Query: 136 KPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPV---SKRLACGDYGNGAMA-EPSL 191
           + L + P MN  MW NP T+ ++  + + G+S+ P     S  LA   +    +A EP  
Sbjct: 111 EKLSIFPNMNLRMWENPVTQNNIRLLKDYGVSIYPANISESYELASKTFKKNVVAPEPYK 170

Query: 192 IYSTV 196
           +   +
Sbjct: 171 VLEFI 175

>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A* Length = 181

 Score =  150 bits (382), Expect = 1e-46
 Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 20/181 (11%)

Query: 24  RILLAASGSVAAIKFGNLCHCFSEW-AEVRAVATKSSLHFID---RAALPKDVIFYTDED 79
           ++L+ A+ S+  I   +      +   EV  + + SS +FI+         ++  Y +  
Sbjct: 4   KLLICATASINVININHYIVELKQHFDEVNILFSPSSKNFINTDVLKLFCDNL--YDEIK 61

Query: 80  EWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLF 139
           +          + HI +    + +++ P SANT+ KIA G+CDNLLT +       + LF
Sbjct: 62  DPL--------LNHINIVENHEYILVLPASANTINKIANGICDNLLTTVCLT--GYQKLF 111

Query: 140 VAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYG----NGAMAEPSLIYST 195
           + P MN  MW NPF ++++  +    + +  P   +      G    N  M     + + 
Sbjct: 112 IFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNKSFEISSGRYKNNITMPNIENVLNF 171

Query: 196 V 196
           V
Sbjct: 172 V 172

>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans} Length = 201

 Score =  118 bits (298), Expect = 1e-33
 Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 13/179 (7%)

Query: 24  RILLAASGSVAAI-KFGNLCHCF-SEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEW 81
            +    +GS     +            A+V    T +      +     + I   ++ + 
Sbjct: 9   HVGFGLTGSHCTYHEVLPQMERLVELGAKVTPFVTHTVQTTDTKFGESSEWI---NKIKQ 65

Query: 82  ATWNKIGDSVL---HIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAW-DYNKP 137
            T   I DS++       +   D MVIAP++ N+  K A  + D+ +    +A     KP
Sbjct: 66  ITEEPIVDSMVKAEPFGPKTPLDCMVIAPMTGNSTSKFANAMTDSPVLMGAKATLRNGKP 125

Query: 138 LFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTV 196
           + V  + N  +  N      LM+     I  IP    +       N  +A    +  T+
Sbjct: 126 VVVGISTNDALGLNGINIMRLMATK--NIYFIPF--GQDNPQVKPNSLVARMEALPETI 180

>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus} Length = 207

 Score =  113 bits (284), Expect = 1e-31
 Identities = 39/193 (20%), Positives = 74/193 (38%), Gaps = 20/193 (10%)

Query: 24  RILLAASGSVAAIK-FGNLCHCF-SEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEW 81
           RI    +GS    +          +E AEVR V + +      R     +   +  + E 
Sbjct: 7   RIGFGFTGSHCTYEEVMPHLEKLIAEGAEVRPVVSYTVQSTNTRFGEGAE---WIKKIEE 63

Query: 82  ATWNKIGDSVL---HIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAW-DYNKP 137
            T  K  +S++    +  +   D MVIAPL+ N++ K A  + D+ +    +A     KP
Sbjct: 64  ITGFKAINSIVGAEPLGPKIPLDCMVIAPLTGNSMSKFANAMTDSPVLMAAKATLRNGKP 123

Query: 138 LFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 197
           + +A + N  +  N      LM+          P           +    +P+ + + + 
Sbjct: 124 VVLAVSTNDALGLNGVNLMRLMA---TKNIYFVP--------FGQDAPEKKPNSMVARME 172

Query: 198 LFAESRNQSGDGK 210
           L  ++  ++  GK
Sbjct: 173 LLEDTVLEALQGK 185

>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus} Length = 189

 Score = 82.6 bits (204), Expect = 6e-20
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 9/154 (5%)

Query: 24  RILLA---ASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDR--AALPKDVIFYTDE 78
           +I L    ASG +  IK   L         V  V ++++   +    +   ++V+     
Sbjct: 3   KIALCITGASGVIYGIKL--LQVLEELDFSVDLVISRNAKVVLKEEHSLTFEEVLKGLKN 60

Query: 79  DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
                 N     +           + + P S NTL  IA G+  NL+  +       K  
Sbjct: 61  VRIHEENDFTSPLASGSRLVHYRGVYVVPCSTNTLSCIANGINKNLIHRVGEVAL--KER 118

Query: 139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPPV 172
                +      N     +++ I  +G  ++P  
Sbjct: 119 VPLVLLVREAPYNEIHLENMLKITRMGGVVVPAS 152

>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} Length = 209

 Score = 70.0 bits (171), Expect = 4e-15
 Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 19/168 (11%)

Query: 20  LRKPRILLA---ASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFI---------DRAA 67
               RI LA   ASG+   ++   L     E  EV  + +K++   +          +  
Sbjct: 2   SGPERITLAMTGASGAQYGLRL--LDCLVQEEREVHFLISKAAQLVMATETDVALPAKPQ 59

Query: 68  LPKDVI--FYTDEDEWATWNKIGDSVLHI-ELRRWADIMVIAPLSANTLGKIAGGLCDNL 124
             +  +  +              D +          + MVI P S  TL  +A G C+NL
Sbjct: 60  AMQAFLTEYCGAAAGQIRVFGQNDWMAPPASGSSAPNAMVICPCSTGTLSAVATGACNNL 119

Query: 125 LTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPV 172
           +                  +      +     +++ +  LG  ++P  
Sbjct: 120 IERAADVALK--ERRPLVLVPREAPFSSIHLENMLKLSNLGAVILPAA 165

>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1 Length = 197

 Score = 64.5 bits (157), Expect = 4e-13
 Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 20/158 (12%)

Query: 24  RILLAASGSVAAIKFGNLCHCFSEWA--EVRAVATKSSLHFID-------RAALPKDVIF 74
           ++++  +G+  A     L     E    E   V +K +   I+       R         
Sbjct: 2   KLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDVAALADFS 61

Query: 75  YTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDY 134
           +   D+ AT +               D M++ P S  TL  I  G  D L+         
Sbjct: 62  HNPADQAATIS---------SGSFRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADV--V 110

Query: 135 NKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPV 172
            K       +   M  +     +++++  +G++++PP+
Sbjct: 111 LKEGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPM 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
1mvl_A	209	PPC decarboxylase athal3A; flavoprotein, active si	100.0
1qzu_A	206	Hypothetical protein MDS018; alpha-beta sandwich,	100.0
1p3y_1	194	MRSD protein; flavoprotein, FMN, rossmann fold, HF	100.0
1g63_A	181	Epidermin modifying enzyme EPID; alpha, beta prote	100.0
3qjg_A	175	Epidermin biosynthesis protein EPID; structural ge	100.0
3mcu_A	207	Dipicolinate synthase, B chain; NESG, structural g	100.0
3lqk_A	201	Dipicolinate synthase subunit B; flavoprotein, PSI	100.0
3zqu_A	209	Probable aromatic acid decarboxylase; lyase; HET:	100.0
2ejb_A	189	Probable aromatic acid decarboxylase; phenylacryli	100.0
1sbz_A	197	Probable aromatic acid decarboxylase; FMN binding,	100.0
2o6l_A	170	UDP-glucuronosyltransferase 2B7; drug metabolism,	91.59
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	84.88
3tsa_A	391	SPNG, NDP-rhamnosyltransferase; glycosyltransferas	81.43

>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*

Probab=100.00  E-value=3.6e-60  Score=397.08  Aligned_cols=205  Identities=79%  Similarity=1.313  Sum_probs=164.6

Q ss_pred             CCCCcchhhhhhccCCCCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCCCCCeeEeccccccc
Q 028199            5 EPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWAT   83 (212)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~   83 (212)
                      ++++.++++|.-...++++||+||+|||+++||++++++.|++ | +|+||+|++|.+|++++.++++.++|+|.++|..
T Consensus         2 ~~~~~~~~~~~~~~~l~~k~IllgvTGsiaa~k~~~ll~~L~~~g-~V~vv~T~~A~~fv~~~~~~~~~~v~~d~~~~~~   80 (209)
T 1mvl_A            2 ENGKRDRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWA-EVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSS   80 (209)
T ss_dssp             -----------------CCEEEEEECSSGGGGGHHHHHHHHHTTS-EEEEEECTGGGGTCCGGGSCTTCEEECTTHHHHH
T ss_pred             CCCccchhhcccccccCCCEEEEEEeCcHHHHHHHHHHHHHhcCC-CEEEEEcchHHHhcCHHHhhcCCeEEeCcccccc
Confidence            4556678888888888899999999999999999999999986 8 9999999999999999999877889999877877


Q ss_pred             cccCCCccccccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHH
Q 028199           84 WNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDE  163 (212)
Q Consensus        84 ~~~~~~~~~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~  163 (212)
                      |.+.++++.|+++.+|+|+|||||||+|||||||+||||||++++++|++.++|++++|+||+.||+||++|+||++|++
T Consensus        81 ~~~~~~~i~hi~l~~~aD~mvIaPaTanTlAKiA~GiaDnLlt~~~~A~d~~~pvvlaPaMN~~M~e~P~t~~nl~~L~~  160 (209)
T 1mvl_A           81 WNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDE  160 (209)
T ss_dssp             CSSTTSCCHHHHHHHHCSEEEEEEECHHHHHHHHHTCCSSHHHHHHHTCCTTSCEEEEECCCHHHHHSHHHHHHHHHHHH
T ss_pred             ccccCCCccchhhcccCCEEEEecCCHHHHHHHHccccCcHHHHHHHHhcCCCCEEEEECCChhHhhChhHHHHHHHHHH
Confidence            76667789999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             CCCEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhhcCCCCCCCCC
Q 028199          164 LGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGK  210 (212)
Q Consensus       164 ~G~~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~~~l~~~~~  210 (212)
                      +|++|+||..|+++||+.|+|+|+++|+|++++..++..++|+||+-
T Consensus       161 ~G~~ivpP~~g~lacg~~G~gr~~~~~~Iv~~v~~~l~~~~l~~~~~  207 (209)
T 1mvl_A          161 LGITLIPPIKKRLASGDYGNGAMAEPSLIYSTVRLFWESQAHQQTGG  207 (209)
T ss_dssp             HTCEECCCBC---------CCBCCCHHHHHHHHHHHHHHC-------
T ss_pred             CCCEEeCCccccccCCCcCCCCCCCHHHHHHHHHHHhCCCccCCCCC
Confidence            99999999999999999999999999999999999999999999964

>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1

Probab=100.00  E-value=8.6e-54  Score=357.93  Aligned_cols=182  Identities=47%  Similarity=0.830  Sum_probs=148.0

Q ss_pred             CCCCCeEEEEeeChhHHHHHHHHHHHhhc--CCeEEEEecccHHHHhccccCCCCCeeEeccccccccccCCCccccccc
Q 028199           19 GLRKPRILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIEL   96 (212)
Q Consensus        19 ~~~~~kilv~vTGs~~a~~~~~li~~L~~--g~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~~~~~~~~~~h~~l   96 (212)
                      .++++||+||+|||+++++++++++.|++  |++|+||+|++|.+|++++.++  .++|+|.+.|..|...+.++.|+++
T Consensus        16 ~l~~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv~T~~A~~fi~~~~~~--~~v~~d~d~~~~~~~~~~~~~Hi~l   93 (206)
T 1qzu_A           16 MERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDIP--VTLYSDADEWEMWKSRSDPVLHIDL   93 (206)
T ss_dssp             CCSSEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEECTGGGGSSCGGGSC--SCEECHHHHHHTCSSTTSCCHHHHH
T ss_pred             ccCCCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEEECHhHHHHhCHHHcC--ceEEecCcccccccCCCCccchhhc
Confidence            46678999999999999999999999975  8999999999999999999885  4788887777655544456889999


Q ss_pred             cccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCccc
Q 028199           97 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRL  176 (212)
Q Consensus        97 ~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~l  176 (212)
                      .+|+|+|||||||+|||||+|+||||||+++++++|+.++|++++|+||..||+||++++|+++|+++|++|++|..|++
T Consensus        94 ~~~aD~~vIaPaTanTlAKiA~GiaDnLlt~~~~alk~~~pvvlaPaMn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~g~l  173 (206)
T 1qzu_A           94 RRWADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKL  173 (206)
T ss_dssp             HTTCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCCTTSCCCEEECCCHHHHTSSTHHHHHHHHHTTCCCCCC------
T ss_pred             ccccCEEEEecCCHHHHHHHHccccCCHHHHHHHHhcCCCCEEEEecCCccccCCHHHHHHHHHHHHCCCEEECCccCcc
Confidence            99999999999999999999999999999998889999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCChHHHHHHHHHhhcC
Q 028199          177 ACGDYGNGAMAEPSLIYSTVRLFAES  202 (212)
Q Consensus       177 a~g~~g~g~~~~~~~i~~~v~~~~~~  202 (212)
                      +||+.|.|+|++|++|++.+..+++.
T Consensus       174 acg~~g~g~~~~p~~I~~~v~~~l~~  199 (206)
T 1qzu_A          174 VCGDEGLGAMAEVGTIVDKVKEVLFQ  199 (206)
T ss_dssp             ------------CCHHHHHHCCC---
T ss_pred             ccCCcCCccCCCHHHHHHHHHHHhcc
Confidence            99999999999999999999877753

>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1

Probab=100.00  E-value=5.1e-52  Score=344.29  Aligned_cols=174  Identities=27%  Similarity=0.466  Sum_probs=149.6

Q ss_pred             CCCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCccccccc
Q 028199           20 LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIEL   96 (212)
Q Consensus        20 ~~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~~l   96 (212)
                      +++|||+||+|||++++|++++++.|++ |++|++|+|++|.+|++++.++  +++ +|++.  |..    ..+++|+++
T Consensus         6 l~~k~IllgvTGs~aa~k~~~l~~~L~~~g~~V~vv~T~~A~~fi~~~~~~~l~~~-v~~~~--~~~----~~~~~hi~l   78 (194)
T 1p3y_1            6 LKDKKLLIGICGSISSVGISSYLLYFKSFFKEIRVVMTKTAEDLIPAHTVSYFCDH-VYSEH--GEN----GKRHSHVEI   78 (194)
T ss_dssp             GGGCEEEEEECSCGGGGGTHHHHHHHTTTSSEEEEEECHHHHHHSCHHHHGGGSSE-EECTT--CSS----SCCCCHHHH
T ss_pred             cCCCEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEchhHHHHHHHHHHHHhcCC-Eeccc--ccc----CCCcCcccc
Confidence            4568999999999999999999999987 9999999999999999999875  344 77662  321    116899999


Q ss_pred             cccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCc--
Q 028199           97 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSK--  174 (212)
Q Consensus        97 ~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g--  174 (212)
                      .+|+|+|||||||+|||||+|+||||||+++++.+  .++|++++|+||+.||+||++++|+++|+++|++|+||.+|  
T Consensus        79 ~~~aD~~vIaPaTanTlAKiA~GiaDnLlt~~a~a--~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~g~~  156 (194)
T 1p3y_1           79 GRWADIYCIIPATANILGQTANGVAMNLVATTVLA--HPHNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVEIMA  156 (194)
T ss_dssp             HHHCSEEEEEEECHHHHHHHHTTCCSSHHHHHHHH--SSSCCEEEECCCHHHHTCHHHHHHHHHHHHHTCEECCCBCCC-
T ss_pred             cccCCEEEEeCCCHHHHHHHHhhccCCHHHHHHHH--cCCCEEEEECCChhhcCCHHHHHHHHHHHHCCCEEECCCCCcc
Confidence            99999999999999999999999999999998877  68999999999999999999999999999999999999999  


Q ss_pred             -ccccCCCCC-CCCCChHHHHHHHHHhhcC
Q 028199          175 -RLACGDYGN-GAMAEPSLIYSTVRLFAES  202 (212)
Q Consensus       175 -~la~g~~g~-g~~~~~~~i~~~v~~~~~~  202 (212)
                       +++||+.|+ |+|+++|+|++++..+++.
T Consensus       157 f~lacg~~g~~g~~~~~~~iv~~v~~~l~~  186 (194)
T 1p3y_1          157 FEIATGTRKPNRGLITPDKALLAIEKGFKE  186 (194)
T ss_dssp             -----------CBCCCHHHHHHHHHHHCC-
T ss_pred             cccccCCcCcCCCCCCHHHHHHHHHHHhcc
Confidence             899999999 9999999999999988753

>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*

Probab=100.00  E-value=1.9e-51  Score=337.53  Aligned_cols=172  Identities=27%  Similarity=0.414  Sum_probs=146.0

Q ss_pred             CCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCccccccccc
Q 028199           22 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIELRR   98 (212)
Q Consensus        22 ~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~~l~~   98 (212)
                      .+||++|+|||+++++++++++.|++ |++|++|+|++|.+|++++.++  +++  ++|  .|..+     +++|+++.+
T Consensus         2 ~k~IllgvTGs~aa~k~~~l~~~L~~~g~~V~vv~T~~A~~fi~~~~l~~l~~~--~~d--~~~~~-----~~~hi~l~~   72 (181)
T 1g63_A            2 YGKLLICATASINVININHYIVELKQHFDEVNILFSPSSKNFINTDVLKLFCDN--LYD--EIKDP-----LLNHINIVE   72 (181)
T ss_dssp             CCCEEEEECSCGGGGGHHHHHHHHTTTSSCEEEEECGGGGGTSCGGGGGGTSSC--EEC--TTTCT-----TCCHHHHHH
T ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEchhHHHHHHHHHHHHHhCC--ccc--ccCCC-----CCccccccc
Confidence            47999999999999999999999987 9999999999999999999876  334  444  23211     578999999


Q ss_pred             cccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCc---c
Q 028199           99 WADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSK---R  175 (212)
Q Consensus        99 ~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g---~  175 (212)
                      |+|+|||||||+|||||+|+||||||+++++++  .++|++++|+||..||+||++++|+++|+++|++|+||..|   .
T Consensus        73 ~aD~~vIaPaTantlAKiA~GiaDnllt~~~la--~~~pvvlaPamn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~g~~f~  150 (181)
T 1g63_A           73 NHEYILVLPASANTINKIANGICDNLLTTVCLT--GYQKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNKSFE  150 (181)
T ss_dssp             TCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHH--TGGGEEEEECCCHHHHTCHHHHHHHHHHHTTTCEECCCEECC---
T ss_pred             cCCEEEEecCCHHHHHHHHccccCcHHHHHHHH--cCCCEEEEeCCChhhcCCHHHHHHHHHHHHCCCEEECCCCCcccc
Confidence            999999999999999999999999999998877  68999999999999999999999999999999999999999   8


Q ss_pred             cccCC-CCCCCCCChHHHHHHHHHhhcCCCC
Q 028199          176 LACGD-YGNGAMAEPSLIYSTVRLFAESRNQ  205 (212)
Q Consensus       176 la~g~-~g~g~~~~~~~i~~~v~~~~~~~~l  205 (212)
                      ++||+ .|+|+|+++|+|++++..++ +++|
T Consensus       151 lacg~~~g~g~~~~~~~iv~~v~~~l-~~~~  180 (181)
T 1g63_A          151 ISSGRYKNNITMPNIENVLNFVLNNE-KRPL  180 (181)
T ss_dssp             -------CCEECCCHHHHHHHHHC-------
T ss_pred             cccCCccCCcCCCCHHHHHHHHHHHh-cccC
Confidence            99999 99999999999999999887 4554

>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0

Probab=100.00  E-value=2.4e-51  Score=335.16  Aligned_cols=165  Identities=27%  Similarity=0.485  Sum_probs=150.8

Q ss_pred             CCCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCeeEeccccccccccCCCccccccc
Q 028199           20 LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIFYTDEDEWATWNKIGDSVLHIEL   96 (212)
Q Consensus        20 ~~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v~~d~~~~~~~~~~~~~~~h~~l   96 (212)
                      +++|||++|+|||++++|++++++.|++ |++|++++|++|.+|++++.++  ++ ++|++.+        ....+|+++
T Consensus         3 ~m~k~IllgvTGs~aa~k~~~ll~~L~~~g~~V~vv~T~~A~~fi~~~~l~~l~~-~v~~~~~--------~~~~~hi~l   73 (175)
T 3qjg_A            3 AMGENVLICLCGSVNSINISHYIIELKSKFDEVNVIASTNGRKFINGEILKQFCD-NYYDEFE--------DPFLNHVDI   73 (175)
T ss_dssp             --CCEEEEEECSSGGGGGHHHHHHHHTTTCSEEEEEECTGGGGGSCHHHHHHHCS-CEECTTT--------CTTCCHHHH
T ss_pred             CCCCEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEECcCHHHHhhHHHHHHhcC-CEEecCC--------CCccccccc
Confidence            3458999999999999999999999986 9999999999999999999875  44 7776631        123689999


Q ss_pred             cccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCc--
Q 028199           97 RRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSK--  174 (212)
Q Consensus        97 ~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g--  174 (212)
                      .+|+|+|||+|||+|||||+|+||+|||+++++++  .++|++++|+||+.||+||++++|+++|+++|++|+||.+|  
T Consensus        74 ~~~aD~~vVaPaTanTlakiA~GiaDnLlt~~~la--~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~G~~iv~P~~g~~  151 (175)
T 3qjg_A           74 ANKHDKIIILPATSNTINKIANGICDNLLLTICHT--AFEKLSIFPNMNLRMWENPVTQNNIRLLKDYGVSIYPANISES  151 (175)
T ss_dssp             HHTCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHT--CGGGEEEEECEEHHHHTCHHHHHHHHHHHHTTCEECCCCEEEE
T ss_pred             cchhCEEEEeeCCHHHHHHHHccccCCHHHHHHHH--cCCCEEEEecCChhhhcCHHHHHHHHHHHHCCCEEECCCCCCc
Confidence            99999999999999999999999999999998777  48999999999999999999999999999999999999999  


Q ss_pred             -ccccCCCCCC-CCCChHHHHHH
Q 028199          175 -RLACGDYGNG-AMAEPSLIYST  195 (212)
Q Consensus       175 -~la~g~~g~g-~~~~~~~i~~~  195 (212)
                       .++||++|.| +|+++|+|+++
T Consensus       152 ~~lacg~~g~G~~~~~~~~i~~~  174 (175)
T 3qjg_A          152 YELASKTFKKNVVAPEPYKVLEF  174 (175)
T ss_dssp             EEGGGTEEEEEECCCCHHHHHHH
T ss_pred             ccccCCCcCCCCCCCCHHHHHhh
Confidence             9999999998 99999999975

>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}

Probab=100.00  E-value=4.2e-48  Score=323.45  Aligned_cols=173  Identities=21%  Similarity=0.176  Sum_probs=146.3

Q ss_pred             CCCCeEEEEeeChhHHHH-HHHHHHHhhc-CCeEEEEecccHH----HHhcc----ccCC--CCCeeEeccccccccccC
Q 028199           20 LRKPRILLAASGSVAAIK-FGNLCHCFSE-WAEVRAVATKSSL----HFIDR----AALP--KDVIFYTDEDEWATWNKI   87 (212)
Q Consensus        20 ~~~~kilv~vTGs~~a~~-~~~li~~L~~-g~~V~vvlT~sA~----~~i~~----~~l~--~~~~v~~d~~~~~~~~~~   87 (212)
                      +++|||+||+|||+++|| ++++++.|++ |++|++|+|++|.    +|+++    ..++  ++.+++++.  |      
T Consensus         3 l~~k~IllgiTGsiaayk~~~~ll~~L~~~g~eV~vv~T~~A~~vl~~f~~~~~~~~~l~~ltg~~v~~~~--~------   74 (207)
T 3mcu_A            3 LKGKRIGFGFTGSHCTYEEVMPHLEKLIAEGAEVRPVVSYTVQSTNTRFGEGAEWIKKIEEITGFKAINSI--V------   74 (207)
T ss_dssp             CTTCEEEEEECSCGGGGTTSHHHHHHHHHTTCEEEEEECC------------CHHHHHHHHHSSSCCBCSH--H------
T ss_pred             CCCCEEEEEEEChHHHHHHHHHHHHHHHhCCCEEEEEEehHHHHHHHHhcCchhHHHHHHHHhCCceEeec--C------
Confidence            567899999999999998 9999999986 9999999999999    77776    4443  455665442  1      


Q ss_pred             CCccccccccccccEEEEccCCHHHHHHHHccccCcHHHHHHH-hhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCC
Q 028199           88 GDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVR-AWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGI  166 (212)
Q Consensus        88 ~~~~~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~-a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~  166 (212)
                        ..+|+++.+|+|+|||||||+|||||+|+||||||+++++. +++.++|++++|+||+.||.|   ++|+.+|++.|+
T Consensus        75 --~~~hi~ls~~aD~mvIaPaTanTlAKiA~GiaDnLlt~aa~~~L~~~~plvlaPamn~~m~~h---~~Nm~~L~~~G~  149 (207)
T 3mcu_A           75 --GAEPLGPKIPLDCMVIAPLTGNSMSKFANAMTDSPVLMAAKATLRNGKPVVLAVSTNDALGLN---GVNLMRLMATKN  149 (207)
T ss_dssp             --HHGGGTTTSCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEEEETTTTTTT---HHHHHHHHHBTT
T ss_pred             --cccccccchhcCEEEEecCCHHHHHHHHccccCcHHHHHHHHHHhcCCCEEEEECCChhHHHH---HHHHHHHHHCCC
Confidence              24699999999999999999999999999999999998654 346899999999999999999   699999999999


Q ss_pred             EEeCCCCcccccCCCCCCCCCChHHHHHHHHHhhcCCCCC
Q 028199          167 SLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQS  206 (212)
Q Consensus       167 ~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~~~l~  206 (212)
                      +|++|..| ++||+.|.|+|++|++|++++..+++++++|
T Consensus       150 ~ii~P~~~-lacg~~g~g~mae~~~I~~~i~~~l~~~~~q  188 (207)
T 3mcu_A          150 IYFVPFGQ-DAPEKKPNSMVARMELLEDTVLEALQGKQLQ  188 (207)
T ss_dssp             EEECCEEE-SCTTTSTTCEEECGGGHHHHHHHHHTTCCCS
T ss_pred             EEECCCCc-cCCCCcCCcCCCCHHHHHHHHHHHHhCCCCC
Confidence            99999988 9999999999999999999999998877765

>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}

Probab=100.00  E-value=8.2e-44  Score=296.48  Aligned_cols=173  Identities=16%  Similarity=0.111  Sum_probs=150.7

Q ss_pred             CCCCeEEEEeeChhHHH-HHHHHHHHhhc-CCeEEEEecccHHHHhccc--------cCC--CCCeeEeccccccccccC
Q 028199           20 LRKPRILLAASGSVAAI-KFGNLCHCFSE-WAEVRAVATKSSLHFIDRA--------ALP--KDVIFYTDEDEWATWNKI   87 (212)
Q Consensus        20 ~~~~kilv~vTGs~~a~-~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~--------~l~--~~~~v~~d~~~~~~~~~~   87 (212)
                      +++|||+||+|||+++| +++++++.|++ |++|++++|++|.+|++++        .++  ++.+++++.  +      
T Consensus         5 l~~k~I~lgiTGs~aa~~k~~~ll~~L~~~g~eV~vv~T~~A~~~i~~~~~~~~~~~~l~~l~g~~v~~~~--~------   76 (201)
T 3lqk_A            5 FAGKHVGFGLTGSHCTYHEVLPQMERLVELGAKVTPFVTHTVQTTDTKFGESSEWINKIKQITEEPIVDSM--V------   76 (201)
T ss_dssp             CTTCEEEEECCSCGGGGGGTHHHHHHHHHTTCEEEEECSSCSCCTTCCTTCSCHHHHHHHHHCCSCCBCSH--H------
T ss_pred             cCCCEEEEEEEChHHHHHHHHHHHHHHhhCCCEEEEEEChhHHHHHHHhhchhHHHHHHHHHhCCCeEeec--C------
Confidence            56789999999999999 99999999986 9999999999999999987        332  233444331  1      


Q ss_pred             CCccccccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHh-hcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCC
Q 028199           88 GDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRA-WDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGI  166 (212)
Q Consensus        88 ~~~~~h~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a-~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~  166 (212)
                        ..+|+++.+|+|+|||||||+|||||+|+||||||+++++.+ ++.++|++++|+||+.||.||.   |+.+|++.|+
T Consensus        77 --~~~hi~~s~~aD~mvIaP~TanTlAkiA~GiaDnLlt~aa~~~Lk~~~plvl~Pamn~~m~~h~~---Nm~~L~~~G~  151 (201)
T 3lqk_A           77 --KAEPFGPKTPLDCMVIAPMTGNSTSKFANAMTDSPVLMGAKATLRNGKPVVVGISTNDALGLNGI---NIMRLMATKN  151 (201)
T ss_dssp             --HHGGGTTTSCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEEEETTTTTTTHH---HHHHHHTSTT
T ss_pred             --cccccccccccCEEEEccCCHHHHHHHHCcccCcHHHHHHHHHhhcCCCEEEEECCChhHHHhHH---HHHHHHHCCC
Confidence              357999999999999999999999999999999999987765 4689999999999999999995   9999999999


Q ss_pred             EEeCCCCcccccCCCCCCCCCChHHHHHHHHHhhcCCCCC
Q 028199          167 SLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQS  206 (212)
Q Consensus       167 ~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~~~l~  206 (212)
                      +|++|.... +|+..+++.++++|.|.++|.++++.+|++
T Consensus       152 ~i~~P~~~~-~~~~~p~s~~a~~~~i~~tv~~al~~~~~~  190 (201)
T 3lqk_A          152 IYFIPFGQD-NPQVKPNSLVARMEALPETIEAALRGQQYQ  190 (201)
T ss_dssp             EEECCEEES-CTTTCTTCEEECGGGHHHHHHHHHTTCCCS
T ss_pred             EEECCCCcc-ccccCCCcccCCHHHHHHHHHHHHhcCCCC
Confidence            999998643 677777888999999999999999887765

>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0

Probab=100.00  E-value=4.4e-43  Score=293.53  Aligned_cols=167  Identities=20%  Similarity=0.173  Sum_probs=142.4

Q ss_pred             CCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCC--CCCee-----Eeccccc----cccccCC
Q 028199           21 RKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALP--KDVIF-----YTDEDEW----ATWNKIG   88 (212)
Q Consensus        21 ~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~--~~~~v-----~~d~~~~----~~~~~~~   88 (212)
                      ++|||++|+|||++++|++++++.|++ |++|++++|++|.+|++++.+.  +++++     +++..++    ..+...+
T Consensus         3 ~~k~IllgvTGaiaa~k~~~ll~~L~~~g~eV~vv~T~~A~~fi~~et~~~ls~~~v~~~~~~~~~~~~~~~~~~~~~~~   82 (209)
T 3zqu_A            3 GPERITLAMTGASGAQYGLRLLDCLVQEEREVHFLISKAAQLVMATETDVALPAKPQAMQAFLTEYCGAAAGQIRVFGQN   82 (209)
T ss_dssp             SCSEEEEEECSSSCHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHCSCCCCSSHHHHHHHHHHHHTCCTTTEEECCTT
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECccHHHHHHHHhCCcccCCccchhhhhhhhhhcccccceecccc
Confidence            357999999999999999999999986 9999999999999999999876  44555     4332111    0111223


Q ss_pred             Ccccccccccc-ccEEEEccCCHHHHHHHHccccCcHHHHHH-HhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCC
Q 028199           89 DSVLHIELRRW-ADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGI  166 (212)
Q Consensus        89 ~~~~h~~l~~~-aD~~vVaPaTaNtlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~  166 (212)
                      +..+|+++.+| +|+|||||||+|||||||+||||||++++. .+++.++|++++|+   .||.||++++|+.+|++.|+
T Consensus        83 d~~~hI~~~~~~aD~mvIaPaSanTlakiA~GiaDnLltraadv~Lk~~~plvl~Pa---em~~~~~~~~Nm~~L~~~G~  159 (209)
T 3zqu_A           83 DWMAPPASGSSAPNAMVICPCSTGTLSAVATGACNNLIERAADVALKERRPLVLVPR---EAPFSSIHLENMLKLSNLGA  159 (209)
T ss_dssp             CTTSGGGCTTSCCCEEEEEEECHHHHHHHHHTCCCSHHHHHHHHHHHHTCCEEEEEC---CSSCCHHHHHHHHHHHHHTC
T ss_pred             cccCCccccCcccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCcEEEEEc---ccccCHHHHHHHHHHHHCCC
Confidence            45789999999 999999999999999999999999999732 23346899999999   99999999999999999999


Q ss_pred             EEeCCCCcccccCCCCCCCCCChHHHHHHHH
Q 028199          167 SLIPPVSKRLACGDYGNGAMAEPSLIYSTVR  197 (212)
Q Consensus       167 ~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~  197 (212)
                      +|+||.+|+       |.+++++|||++++.
T Consensus       160 ~iipp~~g~-------ya~p~~iediv~~vv  183 (209)
T 3zqu_A          160 VILPAAPGF-------YHQPQSVEDLVDFVV  183 (209)
T ss_dssp             EECCSCCCC-------TTCCCSHHHHHHHHH
T ss_pred             EEeCCCccc-------ccCCCCHHHHHHHHH
Confidence            999999999       789999999999884

>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}

Probab=100.00  E-value=2.2e-41  Score=279.41  Aligned_cols=163  Identities=17%  Similarity=0.144  Sum_probs=139.7

Q ss_pred             CeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhcccc---CCC------CCeeEeccccccccccCCCccc
Q 028199           23 PRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAA---LPK------DVIFYTDEDEWATWNKIGDSVL   92 (212)
Q Consensus        23 ~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~---l~~------~~~v~~d~~~~~~~~~~~~~~~   92 (212)
                      |||++|+|||+++++++++++.|++ |++|++|+|++|.+|++++.   ++.      +.++|++          .+..+
T Consensus         2 k~IllgvTGs~aa~k~~~l~~~L~~~g~~V~vv~T~~A~~~i~~e~~~~~~~l~~~l~~~~v~~~----------~~~~~   71 (189)
T 2ejb_A            2 QKIALCITGASGVIYGIKLLQVLEELDFSVDLVISRNAKVVLKEEHSLTFEEVLKGLKNVRIHEE----------NDFTS   71 (189)
T ss_dssp             CEEEEEECSSTTHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHC-------CCCCCSSEEEEET----------TCTTS
T ss_pred             CEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHhhHHhCCCHHHHHHHhCCCeEecC----------CCCcC
Confidence            6999999999999999999999986 99999999999999999852   221      2233332          12467


Q ss_pred             ccccc---ccccEEEEccCCHHHHHHHHccccCcHHHHHHHh-hcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEE
Q 028199           93 HIELR---RWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRA-WDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISL  168 (212)
Q Consensus        93 h~~l~---~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a-~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~v  168 (212)
                      |+++.   +|+|+|||||||+|||||+|+||||||+++++.+ ++.++|++++|+   .||.||++++|+++|++.|++|
T Consensus        72 hi~~~s~~~~aD~mvIaPaTanTlAkiA~GiaDnLlt~~a~~~lk~~~plvl~Pa---~m~~~~~~~~N~~~L~~~G~~i  148 (189)
T 2ejb_A           72 PLASGSRLVHYRGVYVVPCSTNTLSCIANGINKNLIHRVGEVALKERVPLVLLVR---EAPYNEIHLENMLKITRMGGVV  148 (189)
T ss_dssp             GGGCHHHHTTEEEEEEEEECHHHHHHHHHTCCSSHHHHHHHHHHHHTCCEEEEEC---CSSCCHHHHHHHHHHHHTTCEE
T ss_pred             CccccccccccCEEEEecCCHHHHHHHHcCcCCcHHHHHHHHHccCCCcEEEEEC---CCCCCHHHHHHHHHHHHCCeEE
Confidence            88887   8999999999999999999999999999986654 466899999999   8999999999999999999999


Q ss_pred             eCCCCcccccCCCCCCCCCChHHHHHHHH-HhhcCCCC
Q 028199          169 IPPVSKRLACGDYGNGAMAEPSLIYSTVR-LFAESRNQ  205 (212)
Q Consensus       169 v~P~~g~la~g~~g~g~~~~~~~i~~~v~-~~~~~~~l  205 (212)
                      +||.+|+       |.+++++++|++++. ..+...++
T Consensus       149 vpp~~g~-------~~~p~si~div~~~v~~~ld~~~i  179 (189)
T 2ejb_A          149 VPASPAF-------YHKPQSIDDMINFVVGKLLDVLRI  179 (189)
T ss_dssp             EECCCCS-------TTCCCSHHHHHHHHHHHHHHHTTC
T ss_pred             eCCChHH-------hhCCCCHHHHHHHHHHHHHHhCCC
Confidence            9999998       889999999999884 56655554

>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1

Probab=100.00  E-value=1.6e-39  Score=269.76  Aligned_cols=164  Identities=16%  Similarity=0.160  Sum_probs=137.0

Q ss_pred             CeEEEEeeChhHHHHHHHHHHHhhc--CCeEEEEecccHHHHhccccC------C-CCCeeEeccccccccccCCCcccc
Q 028199           23 PRILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATKSSLHFIDRAAL------P-KDVIFYTDEDEWATWNKIGDSVLH   93 (212)
Q Consensus        23 ~kilv~vTGs~~a~~~~~li~~L~~--g~~V~vvlT~sA~~~i~~~~l------~-~~~~v~~d~~~~~~~~~~~~~~~h   93 (212)
                      +||+||+|||++++|++++++.|++  |++|++|+|++|.+|++++.-      . ....++ +      ..+..+++.|
T Consensus         1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~T~~A~~fi~~~tg~~v~~~~~l~~~~~-~------~~~l~api~s   73 (197)
T 1sbz_A            1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDVAALADFSH-N------PADQAATISS   73 (197)
T ss_dssp             CEEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHSSCCHHHHHHTSSEEE-C------TTCTTSGGGS
T ss_pred             CEEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEECchHHHHhHHHHCCCHHHHHHhcCccc-C------chhhcccccC
Confidence            4899999999999999999999985  899999999999999998751      1 001122 2      1233456677


Q ss_pred             ccccccccEEEEccCCHHHHHHHHccccCcHHHHHH-HhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCC
Q 028199           94 IELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIV-RAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPV  172 (212)
Q Consensus        94 ~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~-~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~  172 (212)
                      ++  .|+|+|||||||+|||||+|+||||||+++++ .+++.++|++++|+   .||.||++++|+++|++.|++|+||.
T Consensus        74 gs--~~aD~mvIaPaTanTlAkiA~GiaDnLlt~aa~v~L~~~~plvl~Pa---~m~~~~~~~~N~~~L~~~G~~ivpp~  148 (197)
T 1sbz_A           74 GS--FRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPR---EMPLSTIHLENMLALSRMGVAMVPPM  148 (197)
T ss_dssp             TT--SCCSEEEEEEECHHHHHHHHHTCCCSHHHHHHHHHHHHTCEEEEEEC---CSSBCHHHHHHHHHHHTTTCEECCCC
T ss_pred             CC--cccCEEEEecCCHhHHHHHHccccccHHHHHHHHHHhcCCCEEEEEC---CCCCCHHHHHHHHHHHHCCCEEECCC
Confidence            66  59999999999999999999999999999765 34557899999999   78999999999999999999999999


Q ss_pred             CcccccCCCCCCCCCChHHHHHHHH-HhhcCCCC
Q 028199          173 SKRLACGDYGNGAMAEPSLIYSTVR-LFAESRNQ  205 (212)
Q Consensus       173 ~g~la~g~~g~g~~~~~~~i~~~v~-~~~~~~~l  205 (212)
                      +|+       |.++.+++++++++. ..+...++
T Consensus       149 ~g~-------~~~p~~i~~~v~~~v~r~ld~~~i  175 (197)
T 1sbz_A          149 PAF-------YNHPETVDDIVHHVVARVLDQFGL  175 (197)
T ss_dssp             CCC-------TTCCCBHHHHHHHHHHHHHGGGTC
T ss_pred             Ccc-------cCCCCCHHHHHHHHHHHHHHhCCC
Confidence            998       788999999999884 45554443

>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}

Probab=91.59  E-value=2.7  Score=31.51  Aligned_cols=55  Identities=7%  Similarity=0.123  Sum_probs=34.4

Q ss_pred             HHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccCCCCCCCCCChHHHHHHHHHhhcC
Q 028199          129 VRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAES  202 (212)
Q Consensus       129 ~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~la~g~~g~g~~~~~~~i~~~v~~~~~~  202 (212)
                      +.++..++|+|++|....    .   ..|-+.+.+.|+-++-+..            -.+.+++.+.+..++++
T Consensus       100 ~Ea~~~G~P~i~~p~~~~----Q---~~na~~l~~~g~g~~~~~~------------~~~~~~l~~~i~~ll~~  154 (170)
T 2o6l_A          100 YEAIYHGIPMVGIPLFAD----Q---PDNIAHMKARGAAVRVDFN------------TMSSTDLLNALKRVIND  154 (170)
T ss_dssp             HHHHHHTCCEEECCCSTT----H---HHHHHHHHTTTSEEECCTT------------TCCHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCCEEeccchhh----H---HHHHHHHHHcCCeEEeccc------------cCCHHHHHHHHHHHHcC
Confidence            344446899999998422    1   2456677777765543211            13678888888877654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=84.88  E-value=0.8  Score=36.52  Aligned_cols=51  Identities=16%  Similarity=0.066  Sum_probs=19.5

Q ss_pred             CCCCCCcchhhhhhccCCCCCeEEEEeeChhHHHHHHHHHHHhh-cCCeEEEEec
Q 028199            3 YSEPTSTDREAMQVNTGLRKPRILLAASGSVAAIKFGNLCHCFS-EWAEVRAVAT   56 (212)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~kilv~vTGs~~a~~~~~li~~L~-~g~~V~vvlT   56 (212)
                      |+.+|+++....+...++++++|+  |||+.+.. ...+++.|. +|++|.++.-
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~il--VtGatG~i-G~~l~~~L~~~G~~V~~~~R   53 (236)
T 3e8x_A            2 GSSHHHHHHSSGRENLYFQGMRVL--VVGANGKV-ARYLLSELKNKGHEPVAMVR   53 (236)
T ss_dssp             -------------------CCEEE--EETTTSHH-HHHHHHHHHHTTCEEEEEES
T ss_pred             CcccccccccccccccCcCCCeEE--EECCCChH-HHHHHHHHHhCCCeEEEEEC
Confidence            677888888888888888888864  45554433 234566665 4899987764

>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*

Probab=81.43  E-value=23  Score=29.76  Aligned_cols=76  Identities=13%  Similarity=0.159  Sum_probs=43.8

Q ss_pred             ccccccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCC
Q 028199           94 IELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVS  173 (212)
Q Consensus        94 ~~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~  173 (212)
                      .++...+|++|-- +-.||               +++++..++|+|++|..    .+.+   .|-+.+.+.|.-++-+..
T Consensus       281 ~~ll~~ad~~v~~-~G~~t---------------~~Ea~~~G~P~v~~p~~----~~q~---~~a~~~~~~g~g~~~~~~  337 (391)
T 3tsa_A          281 NLFLRTCELVICA-GGSGT---------------AFTATRLGIPQLVLPQY----FDQF---DYARNLAAAGAGICLPDE  337 (391)
T ss_dssp             GGTGGGCSEEEEC-CCHHH---------------HHHHHHTTCCEEECCCS----TTHH---HHHHHHHHTTSEEECCSH
T ss_pred             HHHHhhCCEEEeC-CCHHH---------------HHHHHHhCCCEEecCCc----ccHH---HHHHHHHHcCCEEecCcc
Confidence            3455789998843 22222               34555579999999872    1222   566778777765443220


Q ss_pred             cccccCCCCCCCCCChHHHHHHHHHhhcC
Q 028199          174 KRLACGDYGNGAMAEPSLIYSTVRLFAES  202 (212)
Q Consensus       174 g~la~g~~g~g~~~~~~~i~~~v~~~~~~  202 (212)
                      .          .-.+.+++.+.+..++++
T Consensus       338 ~----------~~~~~~~l~~ai~~ll~~  356 (391)
T 3tsa_A          338 Q----------AQSDHEQFTDSIATVLGD  356 (391)
T ss_dssp             H----------HHTCHHHHHHHHHHHHTC
T ss_pred             c----------ccCCHHHHHHHHHHHHcC
Confidence            0          002566777777766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	212
d1mvla_	182	c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decar	5e-56
d1qzua_	181	c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decar	1e-49
d1p3y1_	183	c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [Ta	2e-34
d1sbza_	186	c.34.1.1 (A:) Probable aromatic acid decarboxylase	4e-29
d1g5qa_	174	c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl	2e-27

>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 182

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  174 bits (441), Expect = 5e-56
 Identities = 155/182 (85%), Positives = 172/182 (94%)

Query: 22  KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEW 81
           KPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP++V  YTDEDEW
Sbjct: 1   KPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEW 60

Query: 82  ATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVA 141
           ++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+RAWDY KPLFVA
Sbjct: 61  SSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVA 120

Query: 142 PAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAE 201
           PAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLA GDYGNGAMAEPSLIYSTVRLF E
Sbjct: 121 PAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLASGDYGNGAMAEPSLIYSTVRLFWE 180

Query: 202 SR 203
           S+
Sbjct: 181 SQ 182

>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Human (Homo sapiens) [TaxId: 9606]} Length = 181

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  157 bits (399), Expect = 1e-49
 Identities = 86/179 (48%), Positives = 112/179 (62%), Gaps = 4/179 (2%)

Query: 21  RKPRILLAASGSVAAIKFGNLCHCFSEW--AEVRAVATKSSLHFIDRAALPKDVIFYTDE 78
           RK  +L+  +GSVAA+K   L     +    EV  V T+ + HF     +P  V  Y+D 
Sbjct: 3   RKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDIP--VTLYSDA 60

Query: 79  DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
           DEW  W    D VLHI+LRRWAD++++APL ANTLGK+A G+CDNLLTC++RAWD +KPL
Sbjct: 61  DEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPL 120

Query: 139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 197
              PAMNT MW +P T + +  +   G   IP V+K+L CGD G GAMAE   I   V+
Sbjct: 121 LFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVK 179

>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} Length = 183

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: MrsD
species: Bacillus sp. hil-y85/54728 [TaxId: 69002]

 Score =  119 bits (298), Expect = 2e-34
 Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 20  LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDE 78
           L+  ++L+   GS++++   +    F   + E+R V TK++   I     P   + Y  +
Sbjct: 4   LKDKKLLIGICGSISSVGISSYLLYFKSFFKEIRVVMTKTAEDLI-----PAHTVSYFCD 58

Query: 79  DEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPL 138
             ++   + G    H+E+ RWADI  I P +AN LG+ A G+  NL+   V A       
Sbjct: 59  HVYSEHGENGKRHSHVEIGRWADIYCIIPATANILGQTANGVAMNLVATTVLAHP--HNT 116

Query: 139 FVAPAMNTFMWNNPFTERHLMSIDELGISLIPPV---SKRLACGDYGNG-AMAEPSLIYS 194
              P MN  MWN     R++  + + G  +I PV   +  +A G       +  P     
Sbjct: 117 IFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVEIMAFEIATGTRKPNRGLITPDKALL 176

Query: 195 TV 196
            +
Sbjct: 177 AI 178

>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1 {Escherichia coli O157:H7 [TaxId: 83334]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: Probable aromatic acid decarboxylase Pad1
species: Escherichia coli O157:H7 [TaxId: 83334]

 Score =  105 bits (262), Expect = 4e-29
 Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 6/157 (3%)

Query: 24  RILLAASGSVAAIKFGNLCHCFSEW--AEVRAVATKSSLHFIDRAALPKDVIFYTDEDEW 81
           ++++  +G+  A     L     E    E   V +K +   I+              D  
Sbjct: 2   KLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDVAALADFS 61

Query: 82  ATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVA 141
              N    +          D M++ P S  TL  I  G  D L+     A    K     
Sbjct: 62  --HNPADQAATISSGSFRTDGMIVIPCSMKTLAGIRAGYADGLVGRA--ADVVLKEGRKL 117

Query: 142 PAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLAC 178
             +   M  +     +++++  +G++++PP+      
Sbjct: 118 VLVPREMPLSTIHLENMLALSRMGVAMVPPMPAFYNH 154

>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD
species: Staphylococcus epidermidis [TaxId: 1282]

 Score =  100 bits (250), Expect = 2e-27
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 14/180 (7%)

Query: 22  KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDE 80
             ++L+ A+ S+  I   +      + + EV  + + SS +FI+   L        DE +
Sbjct: 2   YGKLLICATASINVININHYIVELKQHFDEVNILFSPSSKNFINTDVLKLFCDNLYDEIK 61

Query: 81  WATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFV 140
               N       +I +    + +++ P SANT+ KIA G+CDNLLT +       + LF+
Sbjct: 62  DPLLN-------NINIVENHEYILVLPASANTINKIANGICDNLLTTVC--LTGYQKLFI 112

Query: 141 APAMNTFMWNNPFTERHLMSIDELGISLIPPVSKR---LACGDY-GNGAMAEPSLIYSTV 196
            P MN  MW NPF ++++  +    + +  P   +   ++ G Y  N  M     + + V
Sbjct: 113 FPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNKSFEISSGRYKNNITMPNIENVLNFV 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d1mvla_	182	4'-phosphopantothenoylcysteine decarboxylase (PPC	100.0
d1qzua_	181	4'-phosphopantothenoylcysteine decarboxylase (PPC	100.0
d1p3y1_	183	MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]}	100.0
d1g5qa_	174	Epidermin modifying enzyme (peptidyl-cysteine deca	100.0
d1sbza_	186	Probable aromatic acid decarboxylase Pad1 {Escheri	100.0
d1pn3a_	391	TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi	83.86
d1vl2a1	168	Argininosuccinate synthetase, N-terminal domain {T	83.73
d1rrva_	401	TDP-vancosaminyltransferase GftD {Amycolatopsis or	82.0
d1k92a1	188	Argininosuccinate synthetase, N-terminal domain {E	80.17

>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.5e-59  Score=382.48  Aligned_cols=182  Identities=85%  Similarity=1.452  Sum_probs=161.2

Q ss_pred             CCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEecccHHHHhccccCCCCCeeEeccccccccccCCCcccccccccccc
Q 028199           22 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWAD  101 (212)
Q Consensus        22 ~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~~~~~~~~~~h~~l~~~aD  101 (212)
                      |+||++|+|||+++||+++|++.|++|++|+|++|++|.+||++..++.....+.+.+.|..+++.+.+.+|+++++|+|
T Consensus         1 k~kIllgvtGsiAayk~~~L~r~L~~~~~V~vv~T~~A~~fi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Hi~la~~aD   80 (182)
T d1mvla_           1 KPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPVLHIELRRWAD   80 (182)
T ss_dssp             CCEEEEEECSSGGGGGHHHHHHHHHTTSEEEEEECTGGGGTCCGGGSCTTCEEECTTHHHHHCSSTTSCCHHHHHHHHCS
T ss_pred             CCEEEEEEecHHHHHHHHHHHHHHhcCCeEEEEEchhHHHhhhhhhhceeeeeeecccccccccccCCchhhhhhhcccc
Confidence            57999999999999999999999988999999999999999999999865566667777877777777789999999999


Q ss_pred             EEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccCCC
Q 028199          102 IMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDY  181 (212)
Q Consensus       102 ~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~la~g~~  181 (212)
                      +|||+|||+|||||+|+||||||+++++++++.++|++++|+||+.||+||++|+||++|+++|++|++|+.|.++||++
T Consensus        81 ~~iVaPATANtiaK~A~GiaD~llt~~~la~~~~kPv~iaPaMn~~Mw~~p~t~~Nl~~L~~~G~~vi~P~~G~lacg~~  160 (182)
T d1mvla_          81 VLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLASGDY  160 (182)
T ss_dssp             EEEEEEECHHHHHHHHHTCCSSHHHHHHHTCCTTSCEEEEECCCHHHHHSHHHHHHHHHHHHHTCEECCCBC--------
T ss_pred             EEEEEeccHHHHHHHHcCCcchhhHHHHHhccCCCCEEEEecccHHHHhhHHHHHHHHHHhccCCEEECCCcceecCCCc
Confidence            99999999999999999999999999999988789999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhhcCC
Q 028199          182 GNGAMAEPSLIYSTVRLFAESR  203 (212)
Q Consensus       182 g~g~~~~~~~i~~~v~~~~~~~  203 (212)
                      |.|||++|++|+++++.+++.|
T Consensus       161 G~Gr~~ep~~I~~~i~~~~~~~  182 (182)
T d1mvla_         161 GNGAMAEPSLIYSTVRLFWESQ  182 (182)
T ss_dssp             -CCBCCCHHHHHHHHHHHHHHC
T ss_pred             cccCCCCHHHHHHHHHHHhhcC
Confidence            9999999999999999888643

>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-57  Score=369.80  Aligned_cols=176  Identities=48%  Similarity=0.860  Sum_probs=137.7

Q ss_pred             CCCeEEEEeeChhHHHHHHHHHHHhh-c-CCeEEEEecccHHHHhccccCCCCCeeEeccccccccccCCCccccccccc
Q 028199           21 RKPRILLAASGSVAAIKFGNLCHCFS-E-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRR   98 (212)
Q Consensus        21 ~~~kilv~vTGs~~a~~~~~li~~L~-~-g~~V~vvlT~sA~~~i~~~~l~~~~~v~~d~~~~~~~~~~~~~~~h~~l~~   98 (212)
                      +++|||+|+|||+++||+++++++|. + |++|+|++|++|.+|++++.++..  ...+...|..|.....++.|+++++
T Consensus         3 ~k~~Ill~vtGSIAayk~~~lv~~L~~~~g~~V~vi~T~~A~~Fv~p~~~~~~--~~~~~~~~~~~~~~~~~~~Hi~La~   80 (181)
T d1qzua_           3 RKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTTERAKHFYSPQDIPVT--LYSDADEWEMWKSRSDPVLHIDLRR   80 (181)
T ss_dssp             SSEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEECTGGGGSSCGGGSCSC--EECHHHHHHTCSSTTSCCHHHHHHT
T ss_pred             CCCEEEEEEecHHHHHHHHHHHHHHHHHcCCEEEEEEChHHHhhcCcccceee--ccCCccccccccccccccceEEecc
Confidence            45689999999999999999999885 3 899999999999999999988621  1112122333444455678999999


Q ss_pred             cccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCccccc
Q 028199           99 WADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLAC  178 (212)
Q Consensus        99 ~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~la~  178 (212)
                      |+|++||||||+|||||+|+||||||+++++++++.++||+++|+||+.||+||++|+||++|+++|++|++|..|.++|
T Consensus        81 ~aDl~lVaPATANtiaK~A~GiaD~lls~~lla~~~~kPv~iaPaMn~~Mw~np~tq~nl~~Lk~~G~~vi~P~~g~lac  160 (181)
T d1qzua_          81 WADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVC  160 (181)
T ss_dssp             TCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCCTTSCCCEEECCCHHHHTSSTHHHHHHHHHTTCCCCCC--------
T ss_pred             cccEEEEEeCcHHHHHHHhccCcCHHHHHHHHhccCCCCEEEEECccHHHHhhHHHHHHHHHHHHCCcEEeCCCCccccC
Confidence            99999999999999999999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCChHHHHHHHHH
Q 028199          179 GDYGNGAMAEPSLIYSTVRL  198 (212)
Q Consensus       179 g~~g~g~~~~~~~i~~~v~~  198 (212)
                      |++|+|||+++++|+++|++
T Consensus       161 g~~G~Grm~e~~~I~~~i~~  180 (181)
T d1qzua_         161 GDEGLGAMAEVGTIVDKVKE  180 (181)
T ss_dssp             ----------CCHHHHHHCC
T ss_pred             CCcccCCCCCHHHHHHHHHh
Confidence            99999999999999998753

>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]}

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: MrsD
species: Bacillus sp. hil-y85/54728 [TaxId: 69002]

Probab=100.00  E-value=2.9e-52  Score=340.80  Aligned_cols=174  Identities=26%  Similarity=0.450  Sum_probs=145.1

Q ss_pred             CCCCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCCC-CCeeEeccccccccccCCCcccccccc
Q 028199           20 LRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPK-DVIFYTDEDEWATWNKIGDSVLHIELR   97 (212)
Q Consensus        20 ~~~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~~-~~~v~~d~~~~~~~~~~~~~~~h~~l~   97 (212)
                      +++|||+||+|||+++++++++++.|++ |++|+||+|++|++|++++.++. ...+|++..      +......|++++
T Consensus         4 l~~KkIllgvTGsiaa~k~~~l~~~L~~~g~eV~vv~T~~A~~fi~~~~~~~l~~~~~~~~~------~~~~~~~Hi~l~   77 (183)
T d1p3y1_           4 LKDKKLLIGICGSISSVGISSYLLYFKSFFKEIRVVMTKTAEDLIPAHTVSYFCDHVYSEHG------ENGKRHSHVEIG   77 (183)
T ss_dssp             GGGCEEEEEECSCGGGGGTHHHHHHHTTTSSEEEEEECHHHHHHSCHHHHGGGSSEEECTTC------SSSCCCCHHHHH
T ss_pred             cCCCEEEEEEeCHHHHHHHHHHHHHHHHCCCeEEEEEEcchhhhccHhHHHHhccceeeccc------ccccccCceecc
Confidence            4678999999999999999999999987 89999999999999999887762 235666532      123356899999


Q ss_pred             ccccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCC---Cc
Q 028199           98 RWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPV---SK  174 (212)
Q Consensus        98 ~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~---~g  174 (212)
                      +|+|+|||+|||+|||||+|+||||||+++++++  .++|++++|+||..||+||++|+||++|+++|+.|++|+   .|
T Consensus        78 ~~aD~~vIaPaTaNtlaKiA~GiaDnL~t~~~la--~~~pvviaPaMn~~M~~np~~~~ni~~L~~~G~~vi~P~~~~~g  155 (183)
T d1p3y1_          78 RWADIYCIIPATANILGQTANGVAMNLVATTVLA--HPHNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVEIMAF  155 (183)
T ss_dssp             HHCSEEEEEEECHHHHHHHHTTCCSSHHHHHHHH--SSSCCEEEECCCHHHHTCHHHHHHHHHHHHHTCEECCCBCCC--
T ss_pred             ccccEEEEEecCHHHHHHHHhhhccchhhHHHhh--ccCceEEEEccchHHHhhhhhHHHHHHHHHCCCEEeCCCCCCcc
Confidence            9999999999999999999999999999998888  478999999999999999999999999999999999997   57


Q ss_pred             ccccCCCCCCC-CCChHHHHHHHHHhhc
Q 028199          175 RLACGDYGNGA-MAEPSLIYSTVRLFAE  201 (212)
Q Consensus       175 ~la~g~~g~g~-~~~~~~i~~~v~~~~~  201 (212)
                      .++||+.|.|+ |++|++|++++++.|+
T Consensus       156 ~la~g~~~~g~~~~~p~~i~~~i~~~~~  183 (183)
T d1p3y1_         156 EIATGTRKPNRGLITPDKALLAIEKGFK  183 (183)
T ss_dssp             ----------CBCCCHHHHHHHHHHHCC
T ss_pred             ccccCCcCCCCCCCCHHHHHHHHHHhcC
Confidence            89999999998 9999999999988763

>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=100.00  E-value=1.8e-50  Score=327.75  Aligned_cols=164  Identities=25%  Similarity=0.407  Sum_probs=143.2

Q ss_pred             CCeEEEEeeChhHHHHHHHHHHHhhc-CCeEEEEecccHHHHhccccCCC-CCeeEeccccccccccCCCcccccccccc
Q 028199           22 KPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPK-DVIFYTDEDEWATWNKIGDSVLHIELRRW   99 (212)
Q Consensus        22 ~~kilv~vTGs~~a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l~~-~~~v~~d~~~~~~~~~~~~~~~h~~l~~~   99 (212)
                      .+||++|+|||++++|+++++++|++ |++|+|++|++|++|++++.++. ...+|.+..        .....|+++++|
T Consensus         2 ~~kIll~vtGsiaa~k~~~li~~L~~~g~~V~vv~T~sA~~fv~~~~l~~~~~~~~~~~~--------~~~~~hi~l~~~   73 (174)
T d1g5qa_           2 YGKLLICATASINVININHYIVELKQHFDEVNILFSPSSKNFINTDVLKLFCDNLYDEIK--------DPLLNNINIVEN   73 (174)
T ss_dssp             BSCEEEEECSCGGGGGHHHHHHHHTTTBSCEEEEECGGGGGTSCGGGGGGTSSCEECTTT--------CTTCCHHHHHHT
T ss_pred             CCeEEEEEECHHHHHHHHHHHHHHHHCCCeEEEEEehhhhhhccHhHHhHhhCccccccc--------cccccceeeccc
Confidence            35799999999999999999999986 89999999999999999998862 123443321        123679999999


Q ss_pred             ccEEEEccCCHHHHHHHHccccCcHHHHHHHhhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccC
Q 028199          100 ADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACG  179 (212)
Q Consensus       100 aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~la~g  179 (212)
                      +|+|||+|||+|||||+|+||||||++++++++  ++|++++|+||+.||+||++|+|+++|+++|++|++|..|.  |+
T Consensus        74 aD~~lVaPaTaNtlaKiA~GiaDnllt~~~la~--~~piiiaPaMn~~Mw~~p~~~~nl~~L~~~G~~vi~P~~g~--~~  149 (174)
T d1g5qa_          74 HEYILVLPASANTINKIANGICDNLLTTVCLTG--YQKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDMNK--SF  149 (174)
T ss_dssp             CSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHT--GGGEEEEECSCHHHHTCHHHHHHHHHHHTTTCEECCCEEEE--EE
T ss_pred             cceEEEEecCHHHHHHHHHhhcccchhheeecc--cccEEEEecccHHHHhhhhHHHHHHHHHHCCCEEECCCCCC--cc
Confidence            999999999999999999999999999998885  68999999999999999999999999999999999999885  44


Q ss_pred             CCCC------CCCCChHHHHHHHH
Q 028199          180 DYGN------GAMAEPSLIYSTVR  197 (212)
Q Consensus       180 ~~g~------g~~~~~~~i~~~v~  197 (212)
                      +.|.      ++||++|+|+++|.
T Consensus       150 ~~~~G~~~~~~~~~~~e~I~~~v~  173 (174)
T d1g5qa_         150 EISSGRYKNNITMPNIENVLNFVL  173 (174)
T ss_dssp             ETTTTEEEEEEECCCHHHHHHHHH
T ss_pred             cccccCCCCCCcCCCHHHHHHHhh
Confidence            4443      46999999999885

>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1 {Escherichia coli O157:H7 [TaxId: 83334]}

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: Probable aromatic acid decarboxylase Pad1
species: Escherichia coli O157:H7 [TaxId: 83334]

Probab=100.00  E-value=6.9e-40  Score=267.79  Aligned_cols=163  Identities=18%  Similarity=0.177  Sum_probs=136.5

Q ss_pred             eEEEEeeChhHHHHHHHHHHHhhc--CCeEEEEecccHHHHhccccCCC--CCeeEeccccccccccCCCcccccccccc
Q 028199           24 RILLAASGSVAAIKFGNLCHCFSE--WAEVRAVATKSSLHFIDRAALPK--DVIFYTDEDEWATWNKIGDSVLHIELRRW   99 (212)
Q Consensus        24 kilv~vTGs~~a~~~~~li~~L~~--g~~V~vvlT~sA~~~i~~~~l~~--~~~v~~d~~~~~~~~~~~~~~~h~~l~~~   99 (212)
                      ||+||+|||++++++.++++.|.+  |++|+|++|++|.+|++++.+..  +..++.+.  ++.+.  .....|+++.+|
T Consensus         2 rIllgITGas~a~~a~~ll~~L~~~~g~~V~vv~T~~A~~~i~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~sls~~   77 (186)
T d1sbza_           2 KLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDVAALADF--SHNPA--DQAATISSGSFR   77 (186)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHSSCCHHHHHHTSSE--EECTT--CTTSGGGSTTSC
T ss_pred             EEEEEEccHHHHHHHHHHHHHHHHhcCCEEEEEECchHHhhhhHhhhhhhhcCceeeec--ccCcc--ccCCcccccccc
Confidence            799999999999999999999874  79999999999999999988752  22222221  11111  123569999999


Q ss_pred             ccEEEEccCCHHHHHHHHccccCcHHHHHHHh-hcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCccccc
Q 028199          100 ADIMVIAPLSANTLGKIAGGLCDNLLTCIVRA-WDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLAC  178 (212)
Q Consensus       100 aD~~vVaPaTaNtlaKiA~GiaDnllt~~~~a-~~~~~Pvvi~Pamn~~m~~~P~~~~nl~~L~~~G~~vv~P~~g~la~  178 (212)
                      +|+|||+|||+|||||+|+||||||+++++.+ .+.++|++++|+   .||.||++++|+++|++.|++|+||.+|+   
T Consensus        78 aD~~vIaPaTanTlAKiA~GiaDnLlt~~a~~~~k~~~~lv~~p~---em~~~~~~~~N~~~L~~~G~~i~pp~~g~---  151 (186)
T d1sbza_          78 TDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPR---EMPLSTIHLENMLALSRMGVAMVPPMPAF---  151 (186)
T ss_dssp             CSEEEEEEECHHHHHHHHHTCCCSHHHHHHHHHHHHTCEEEEEEC---CSSBCHHHHHHHHHHHTTTCEECCCCCCC---
T ss_pred             ccEEEEccccHhHHHHHHcCCCCCHHHHHHHHhccccceeEEeec---CCccCHHHHHHHHHHHHCCcEEeCCChhh---
Confidence            99999999999999999999999999986644 467889888886   79999999999999999999999999998   


Q ss_pred             CCCCCCCCCChHHHHHHHH-Hhh
Q 028199          179 GDYGNGAMAEPSLIYSTVR-LFA  200 (212)
Q Consensus       179 g~~g~g~~~~~~~i~~~v~-~~~  200 (212)
                          |+++.++|||++++. ..+
T Consensus       152 ----y~~p~~~~dl~~~~v~r~l  170 (186)
T d1sbza_         152 ----YNHPETVDDIVHHVVARVL  170 (186)
T ss_dssp             ----TTCCCBHHHHHHHHHHHHH
T ss_pred             ----hcCCCCHHHHHHHHHHHHH
Confidence                889999999999874 444

>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-epi-vancosaminyltransferase GtfA
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=83.86  E-value=0.76  Score=36.39  Aligned_cols=45  Identities=18%  Similarity=0.211  Sum_probs=35.6

Q ss_pred             eEEEEeeChhH-HHHHHHHHHHhhc-CCeEEEEecccHHHHhccccC
Q 028199           24 RILLAASGSVA-AIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAAL   68 (212)
Q Consensus        24 kilv~vTGs~~-a~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l   68 (212)
                      ||++...|+.+ .+-.+.+.++|.+ ||+|.++.++....++....+
T Consensus         2 ril~~~~gt~Ghi~P~laLA~~L~~rGh~V~~~~~~~~~~~v~~~g~   48 (391)
T d1pn3a_           2 RVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGV   48 (391)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTC
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHCCCEEEEEEChhhHhHHHHCCC
Confidence            78998888844 4448889999985 999999998888877765544

>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.73  E-value=0.68  Score=32.07  Aligned_cols=33  Identities=21%  Similarity=0.096  Sum_probs=24.8

Q ss_pred             CCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEec
Q 028199           22 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVAT   56 (212)
Q Consensus        22 ~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT   56 (212)
                      |+||+||+|||....-+..++..+  +.+|.++..
T Consensus         1 K~KIvvalSGGvDS~vl~~lL~~~--~~~v~a~~~   33 (168)
T d1vl2a1           1 KEKVVLAYSGGLDTSVILKWLCEK--GFDVIAYVA   33 (168)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHHT--TCEEEEEEE
T ss_pred             CCEEEEEeccHHHHHHHHHHHHHc--CCeEEEEEc
Confidence            579999999999888766666543  677766653

>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-vancosaminyltransferase GftD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=82.00  E-value=0.97  Score=35.84  Aligned_cols=45  Identities=16%  Similarity=0.152  Sum_probs=34.6

Q ss_pred             eEEEEeeChhHH-HHHHHHHHHhhc-CCeEEEEecccHHHHhccccC
Q 028199           24 RILLAASGSVAA-IKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAAL   68 (212)
Q Consensus        24 kilv~vTGs~~a-~~~~~li~~L~~-g~~V~vvlT~sA~~~i~~~~l   68 (212)
                      ||++...|+.+= .-...+.++|++ ||+|+++.++....++....+
T Consensus         2 rIl~~~~gt~Ghv~P~l~lA~~L~~rGh~V~~~t~~~~~~~v~~~g~   48 (401)
T d1rrva_           2 RVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVGV   48 (401)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHTC
T ss_pred             eEEEECCCChhHHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHCCC
Confidence            788888887443 347788999985 999999998887777765443

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.17  E-value=1.2  Score=31.36  Aligned_cols=34  Identities=21%  Similarity=-0.076  Sum_probs=24.2

Q ss_pred             CCCeEEEEeeChhHHHHHHHHHHHhhcCCeEEEEec
Q 028199           21 RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVAT   56 (212)
Q Consensus        21 ~~~kilv~vTGs~~a~~~~~li~~L~~g~~V~vvlT   56 (212)
                      .++||+|++|||.-..-+..+++..  |++|.++.=
T Consensus         9 ~gkKv~vA~SGGvDSsvll~lL~~~--g~~v~~~~~   42 (188)
T d1k92a1           9 VGQRIGIAFSGGLDTSAALLWMRQK--GAVPYAYTA   42 (188)
T ss_dssp             TTSEEEEECCSSHHHHHHHHHHHHT--TCEEEEEEE
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHc--CCcCeEEee
Confidence            3679999999998887655554332  777776653