Citrus Sinensis ID: 028211

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MSPPAPIVETPVEEPEKIKPQDEDEPVVEDVKDDEEEDDDHDNDDDDEDDDDNKDDGAQGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccEEcccEEEEEEEEcccEEEEEEccEEEEcccccEEEEEcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccHHHHcccccHHHHHHHHHHccccccccEEEEEEEccccEEEEEcccccEccccccEEEEEcccEHHcHHHHHHHHHHHHHccccccccccccccccccccHHHHccHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHcc
Coil and Loop (DISEMBL)
msppapivetpveepekikpqdedepvvedvkddeeedddhdnddddeddddnkddgaqgsskqsrSEKKSRKAMLKlgmkpvtgVSRVTIKRTKNILffiskpdvfkspnsetyVIFGEAKIEDLSTQLQTQAAQqfrmpdmgsvmakpdassaaagaqqdeeeeevdetgveprdidLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT
Flexible Loop (DISEMBL)
msppapivetpveepekikpqdedepvvedvkddeeedddhdnddddeddddnkddgaqgsskqsrsekksrkamlklgmkpvtgvsrvtikRTKNILffiskpdvfkspnSETYVIFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAagaqqdeeeeevdetgveprdiDLVMTQAgvsrskavkalkthngdivsaimeltt
Low Complexity Region (SEG)
MSPPAPIVETPVEEPEKIKPQdedepvvedvkddeeedddhdnddddeddddnkddGAQGsskqsrsekksrkAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDlstqlqtqaaqqFRMPDMGSVMAKPDassaaagaqqdeeeeevdetgvePRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT
Disordered region (IsUnstruct)
*******************************************************************************MKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIE****************************************************************************************
Disordered Region (DISOPRED)
*****************************************************************************LGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIE***********************************************GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT
Disordered Region (DISEMBL)
**************************************************************************MLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSTQLQTQAAQQFRMPDMGS****************************EPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT
Disordered Region (DISPRO)
********************************************************************KK*RK*MLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSTQLQTQAAQQ*********************************TGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPPAPIVETPVEEPEKIKPQDEDEPVVEDVKDDEEEDDDHDNDDDDEDDDDNKDDGAQGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q94JX9	217	Nascent polypeptide-assoc	yes	no	0.962	0.940	0.709	1e-68
Q9M612	205	Nascent polypeptide-assoc	N/A	no	0.721	0.746	0.721	2e-60
Q9SZY1	212	Nascent polypeptide-assoc	no	no	0.966	0.966	0.674	8e-60
Q8LGC6	209	Nascent polypeptide-assoc	no	no	0.707	0.717	0.727	2e-54
Q9LHG9	203	Nascent polypeptide-assoc	no	no	0.726	0.758	0.708	3e-54
Q6ICZ8	204	Nascent polypeptide-assoc	no	no	0.745	0.774	0.742	3e-52
Q8AWF2	215	Nascent polypeptide-assoc	yes	no	0.698	0.688	0.626	7e-44
P70670	2187	Nascent polypeptide-assoc	yes	no	0.872	0.084	0.497	3e-42
Q8JIU7	215	Nascent polypeptide-assoc	no	no	0.698	0.688	0.613	3e-42
Q5E9A1	215	Nascent polypeptide-assoc	yes	no	0.698	0.688	0.613	4e-42

>sp|Q94JX9|NACA2_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2

 Score =  258 bits (660), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 156/220 (70%), Positives = 180/220 (81%), Gaps = 16/220 (7%)

Query: 3   PPAPIVETPVEEPEKI----------KPQDEDEPVVEDVKDDEEEDDDHDNDDDDEDDDD 52
           PPA + E+   +PE+           K    DEP+VEDVKDDE      D+DDDDE+++D
Sbjct: 4   PPAVVTESADGQPEQPPVTAIAEELEKKLQTDEPIVEDVKDDE------DDDDDDEEEED 57

Query: 53  NKDDGAQGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNS 112
           +   G  GSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKN+LFFISKPDVFKSP+S
Sbjct: 58  DDAQGVSGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHS 117

Query: 113 ETYVIFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETG 172
           ETYVIFGEAKIEDLS+QLQTQAAQQFRMP++G+   + +AS+A   AQ +E+EEE+DETG
Sbjct: 118 ETYVIFGEAKIEDLSSQLQTQAAQQFRMPEIGATSQRAEASTATVEAQVEEDEEEIDETG 177

Query: 173 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 212
           VE RDIDLVMTQAGVSRSKAVKALK+H+GDIVSAIMELTT
Sbjct: 178 VEARDIDLVMTQAGVSRSKAVKALKSHDGDIVSAIMELTT 217

May promote appropriate targeting of ribosome-nascent polypeptide complexes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M612|NACA_PINTA Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1

 Score =  231 bits (590), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/158 (72%), Positives = 137/158 (86%), Gaps = 5/158 (3%)

Query: 55  DDGAQGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSET 114
           + G +G SKQSRSEKK RKAMLKLGMKPV+GVSRVTIK++KNILF IS PDVFKSP S+T
Sbjct: 53  EQGGEGKSKQSRSEKKCRKAMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDT 112

Query: 115 YVIFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVE 174
           Y+ FGEAKIEDLS+QLQTQAA+QF+ P++  V  KP++S+AA      E+E+EVD+TGVE
Sbjct: 113 YIAFGEAKIEDLSSQLQTQAAEQFKAPNLSHVTMKPESSTAA-----QEDEDEVDDTGVE 167

Query: 175 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 212
           P+DI+LVMTQAGVSR+KAVKALK  +GDIVSAIM+LTT
Sbjct: 168 PKDIELVMTQAGVSRTKAVKALKAADGDIVSAIMDLTT 205

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Pinus taeda (taxid: 3352)

>sp|Q9SZY1|NACA4_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1

 Score =  229 bits (585), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 145/215 (67%), Positives = 175/215 (81%), Gaps = 10/215 (4%)

Query: 4   PAPIVETPVEEP------EKIKPQDEDEPVVEDVKDDEEEDDDHDNDDDDEDDDDNKDDG 57
           P P++E   EE       E++K Q E++ VVEDVKD +E+DDD D+DDD+  D   +++ 
Sbjct: 2   PGPVIEEVNEEALMDAIKEQMKLQKENDVVVEDVKDGDEDDDDVDDDDDEIADGAGENE- 60

Query: 58  AQGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVI 117
              +SKQSRSEKKSRKAMLKLGMKPVT VSRVTIKR+KN+LF ISKPDVFKSPNSETYVI
Sbjct: 61  ---ASKQSRSEKKSRKAMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVI 117

Query: 118 FGEAKIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPRD 177
           FGEAKI+D+S+QLQ QAAQ+F+MPD+ S++   D S AA  AQ++E++E+VDETGVE +D
Sbjct: 118 FGEAKIDDMSSQLQAQAAQRFKMPDVASMIPNTDGSEAATVAQEEEDDEDVDETGVEAKD 177

Query: 178 IDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 212
           IDLVMTQAGVSR KAVKALK  NGDIVSAIMELTT
Sbjct: 178 IDLVMTQAGVSRPKAVKALKESNGDIVSAIMELTT 212

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LGC6|NACA5_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2

 Score =  211 bits (538), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/154 (72%), Positives = 138/154 (89%), Gaps = 4/154 (2%)

Query: 61  SSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGE 120
           ++KQSRSEKKSRKA+LKLGMKPV+ VSRVTIKR KN+LF ISKPDV+KSPN+ETYVIFGE
Sbjct: 58  NAKQSRSEKKSRKAVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGE 117

Query: 121 AKIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGA--QQDEEEEEVDETGVEPRDI 178
           AK++DLS+QLQTQAAQ+F+MPD+ S++  P+A S A  A   ++E+E++VD+TGVE RDI
Sbjct: 118 AKVDDLSSQLQTQAAQRFKMPDVTSML--PNAGSEATMAPLAEEEDEDDVDDTGVEARDI 175

Query: 179 DLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 212
           DLVMTQAGVS++KAV ALK ++GDIVSAIMELTT
Sbjct: 176 DLVMTQAGVSKAKAVSALKANDGDIVSAIMELTT 209

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHG9|NACA1_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1

 Score =  211 bits (537), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 133/158 (84%), Gaps = 4/158 (2%)

Query: 55  DDGAQGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSET 114
           D  A G SKQSRSEKKSRKAMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+T
Sbjct: 50  DGEAGGKSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDT 109

Query: 115 YVIFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVE 174
           YVIFGEAKIEDLS+Q+Q+QAA+QF+ PD+ +V++K ++SSAA     +E +EE      E
Sbjct: 110 YVIFGEAKIEDLSSQIQSQAAEQFKAPDLSNVISKGESSSAAVVQDDEEVDEEGV----E 165

Query: 175 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 212
           P+DI+LVMTQAGVSR  AVKALK  +GDIVSAIMELTT
Sbjct: 166 PKDIELVMTQAGVSRPNAVKALKAADGDIVSAIMELTT 203

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ICZ8|NACA3_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1

 Score =  204 bits (520), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 141/159 (88%), Gaps = 1/159 (0%)

Query: 55  DDGAQGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSET 114
           D  A G SKQSRSEKKSRKAMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+T
Sbjct: 46  DGEAGGRSKQSRSEKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDT 105

Query: 115 YVIFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQ-QDEEEEEVDETGV 173
           YVIFGEAKIEDLS+QLQ+QAA+QF+ P++ +V+++ + SSAA  A  QD+++EEVDE GV
Sbjct: 106 YVIFGEAKIEDLSSQLQSQAAEQFKAPNLSNVISQGETSSAATAAAVQDDDDEEVDEEGV 165

Query: 174 EPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 212
           EP+DI+LVMTQAGVS+ +AVKALK  NGDIVSAIMELTT
Sbjct: 166 EPKDIELVMTQAGVSKPRAVKALKLANGDIVSAIMELTT 204

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8AWF2|NACA_ORENI Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1

 Score =  176 bits (447), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 94/150 (62%), Positives = 124/150 (82%), Gaps = 2/150 (1%)

Query: 62  SKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEA 121
           +KQSRSEKK+RKAM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEA
Sbjct: 67  AKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEA 126

Query: 122 KIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPRDIDLV 181
           KIEDLS Q Q  AA++F++P  G  ++    ++     Q++ EEEEVDETGVE +DI+LV
Sbjct: 127 KIEDLSQQAQLAAAEKFKVP--GETVSNVQENTQTPTVQEESEEEEVDETGVEVKDIELV 184

Query: 182 MTQAGVSRSKAVKALKTHNGDIVSAIMELT 211
           M+QA VSR+KAV+ALK +N DIV+AIMELT
Sbjct: 185 MSQANVSRAKAVRALKNNNNDIVNAIMELT 214

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Oreochromis niloticus (taxid: 8128)

>sp|P70670|NACAM_MOUSE Nascent polypeptide-associated complex subunit alpha, muscle-specific form OS=Mus musculus GN=Naca PE=1 SV=2

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 100/201 (49%), Positives = 141/201 (70%), Gaps = 16/201 (7%)

Query: 25   EPVVEDVKDDEEEDDDHDNDDDDEDDDDNK--------------DDGAQGSSKQSRSEKK 70
            +PV+++ K    E D  ++  + E+ D  +              D+     +KQSRSEKK
Sbjct: 1988 QPVLKNNKGSGTESDSDESVPELEEQDSTQTATQQAQLAAAAEIDEEPVSKAKQSRSEKK 2047

Query: 71   SRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSTQL 130
            +RKAM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIEDLS Q 
Sbjct: 2048 ARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQA 2107

Query: 131  QTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVMTQAGVSRS 190
            Q  AA++F++   G  ++    ++     Q++ EEEEVDETGVE +DI+LVM+QA VSR+
Sbjct: 2108 QLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRA 2165

Query: 191  KAVKALKTHNGDIVSAIMELT 211
            KAV+ALK ++ DIV+AIMELT
Sbjct: 2166 KAVRALKNNSNDIVNAIMELT 2186

Prevents inappropriate targeting of non-secretory polypeptides to the endoplasmic reticulum (ER). Binds to nascent polypeptide chains as they emerge from the ribosome and blocks their interaction with the signal recognition particle (SRP), which normally targets nascent secretory peptides to the ER. Also reduces the inherent affinity of ribosomes for protein translocation sites in the ER membrane (M sites) (By similarity). Isoform 1 and isoform 2 appear to bind DNA and play roles in transcription. May act to regulate the expression of genes involved in the development of myotubes.

Mus musculus (taxid: 10090)

>sp|Q8JIU7|NACA_DANRE Nascent polypeptide-associated complex subunit alpha OS=Danio rerio GN=naca PE=1 SV=1

 Score =  171 bits (433), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 92/150 (61%), Positives = 122/150 (81%), Gaps = 2/150 (1%)

Query: 62  SKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEA 121
           +KQSRSEKK+RKAM KLG++ V GV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEA
Sbjct: 67  AKQSRSEKKARKAMSKLGLRQVAGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEA 126

Query: 122 KIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPRDIDLV 181
           KIEDLS Q Q  AA++F++   G  ++    ++     Q++ EEEEVDETGVE +DI+LV
Sbjct: 127 KIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELV 184

Query: 182 MTQAGVSRSKAVKALKTHNGDIVSAIMELT 211
           M+QA VSR+KAV+ALK +N DIV+AIMELT
Sbjct: 185 MSQANVSRAKAVRALKNNNNDIVNAIMELT 214

May promote appropriate targeting of ribosome-nascent polypeptide complexes.

Danio rerio (taxid: 7955)

>sp|Q5E9A1|NACA_BOVIN Nascent polypeptide-associated complex subunit alpha OS=Bos taurus GN=NACA PE=1 SV=1

 Score =  171 bits (432), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 92/150 (61%), Positives = 123/150 (82%), Gaps = 2/150 (1%)

Query: 62  SKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEA 121
           +KQSRSEKK+RKAM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEA
Sbjct: 67  AKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEA 126

Query: 122 KIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPRDIDLV 181
           KIEDLS Q Q  AA++F++   G  ++    ++     Q++ EEEEVDETGVE +DI+LV
Sbjct: 127 KIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELV 184

Query: 182 MTQAGVSRSKAVKALKTHNGDIVSAIMELT 211
           M+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct: 185 MSQANVSRAKAVRALKNNSNDIVNAIMELT 214

Prevents inappropriate targeting of non-secretory polypeptides to the endoplasmic reticulum (ER). Binds to nascent polypeptide chains as they emerge from the ribosome and blocks their interaction with the signal recognition particle (SRP), which normally targets nascent secretory peptides to the ER. Also reduces the inherent affinity of ribosomes for protein translocation sites in the ER membrane (M sites). May act as a specific coactivator for JUN, binding to DNA and stabilizing the interaction of JUN homodimers with target gene promoters.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
359490767	210	PREDICTED: nascent polypeptide-associate	0.735	0.742	0.918	2e-77
357464241	227	Nascent polypeptide-associated complex s	0.731	0.682	0.884	4e-69
255560558	228	nascent polypeptide associated complex a	0.735	0.684	0.923	6e-67
15229149	217	nascent polypeptide-associated complex s	0.962	0.940	0.709	8e-67
118483345	224	unknown [Populus trichocarpa]	0.962	0.910	0.791	1e-66
224132584	225	predicted protein [Populus trichocarpa]	0.735	0.693	0.897	2e-66
297816168	217	nascent polypeptide-associated complex d	0.938	0.917	0.738	2e-66
13899101	217	alpha NAC-like protein [Arabidopsis thal	0.962	0.940	0.704	3e-66
388502016	227	unknown [Lotus japonicus]	0.924	0.863	0.775	3e-66
351725181	225	uncharacterized protein LOC100499943 [Gl	0.929	0.875	0.781	4e-64

>gi|359490767|ref|XP_003634163.1| PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2-like [Vitis vinifera] gi|302143993|emb|CBI23098.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 146/159 (91%), Positives = 150/159 (94%), Gaps = 3/159 (1%)

Query: 57  GAQGS---SKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSE 113
           GAQG+   SKQSRSEKKSRKAMLKLGMKPVTGV RVTIKRTKNILFFISKPDVFKSPNSE
Sbjct: 52  GAQGANEGSKQSRSEKKSRKAMLKLGMKPVTGVGRVTIKRTKNILFFISKPDVFKSPNSE 111

Query: 114 TYVIFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGV 173
           TYVIFGEAKIEDLS+QLQTQAAQQFRMPDMGSVMAK D S+AAAG Q DEEEE +DETGV
Sbjct: 112 TYVIFGEAKIEDLSSQLQTQAAQQFRMPDMGSVMAKSDISAAAAGTQADEEEEVIDETGV 171

Query: 174 EPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 212
           EPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT
Sbjct: 172 EPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464241|ref|XP_003602402.1| Nascent polypeptide-associated complex subunit alpha [Medicago truncatula] gi|217075474|gb|ACJ86097.1| unknown [Medicago truncatula] gi|355491450|gb|AES72653.1| Nascent polypeptide-associated complex subunit alpha [Medicago truncatula] gi|388495690|gb|AFK35911.1| unknown [Medicago truncatula]

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 138/156 (88%), Positives = 147/156 (94%), Gaps = 1/156 (0%)

Query: 57  GAQGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYV 116
           GA GS KQSRSEKKSRKAMLKLG+KPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETY+
Sbjct: 73  GADGS-KQSRSEKKSRKAMLKLGLKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYI 131

Query: 117 IFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPR 176
           IFGEAKIEDLS+QLQTQAAQQFRMPDMGSVMAK D  ++A+GA  +EEEEE+DETGVEP 
Sbjct: 132 IFGEAKIEDLSSQLQTQAAQQFRMPDMGSVMAKQDQGASASGAIPEEEEEEIDETGVEPH 191

Query: 177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 212
           DIDLVMTQAGVS+SKAVKALKTHNGDIV AIMELTT
Sbjct: 192 DIDLVMTQAGVSKSKAVKALKTHNGDIVGAIMELTT 227

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560558|ref|XP_002521293.1| nascent polypeptide associated complex alpha subunit, putative [Ricinus communis] gi|223539478|gb|EEF41067.1| nascent polypeptide associated complex alpha subunit, putative [Ricinus communis]

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 144/156 (92%), Positives = 147/156 (94%)

Query: 57  GAQGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYV 116
           GA GSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYV
Sbjct: 73  GANGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYV 132

Query: 117 IFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPR 176
           IFGEAKIEDLS+QLQTQAAQQFRMPDM SV+ K D S AAA AQ DEEEEEVDETGVEPR
Sbjct: 133 IFGEAKIEDLSSQLQTQAAQQFRMPDMASVLPKSDLSGAAAAAQADEEEEEVDETGVEPR 192

Query: 177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 212
           DIDLVMTQAGV RSKAVKALKTH+GDIVSAIMELTT
Sbjct: 193 DIDLVMTQAGVPRSKAVKALKTHSGDIVSAIMELTT 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229149|ref|NP_190516.1| nascent polypeptide-associated complex subunit alpha-like protein 2 [Arabidopsis thaliana] gi|71151985|sp|Q94JX9.2|NACA2_ARATH RecName: Full=Nascent polypeptide-associated complex subunit alpha-like protein 2; Short=NAC-alpha-like protein 2; AltName: Full=Alpha-NAC-like protein 2 gi|12324452|gb|AAG52192.1|AC012329_19 putative alpha NAC; 61864-63065 [Arabidopsis thaliana] gi|6561948|emb|CAB62452.1| alpha NAC-like protein [Arabidopsis thaliana] gi|332645026|gb|AEE78547.1| nascent polypeptide-associated complex subunit alpha-like protein 2 [Arabidopsis thaliana]

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 156/220 (70%), Positives = 180/220 (81%), Gaps = 16/220 (7%)

Query: 3   PPAPIVETPVEEPEKI----------KPQDEDEPVVEDVKDDEEEDDDHDNDDDDEDDDD 52
           PPA + E+   +PE+           K    DEP+VEDVKDDE      D+DDDDE+++D
Sbjct: 4   PPAVVTESADGQPEQPPVTAIAEELEKKLQTDEPIVEDVKDDE------DDDDDDEEEED 57

Query: 53  NKDDGAQGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNS 112
           +   G  GSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKN+LFFISKPDVFKSP+S
Sbjct: 58  DDAQGVSGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHS 117

Query: 113 ETYVIFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETG 172
           ETYVIFGEAKIEDLS+QLQTQAAQQFRMP++G+   + +AS+A   AQ +E+EEE+DETG
Sbjct: 118 ETYVIFGEAKIEDLSSQLQTQAAQQFRMPEIGATSQRAEASTATVEAQVEEDEEEIDETG 177

Query: 173 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 212
           VE RDIDLVMTQAGVSRSKAVKALK+H+GDIVSAIMELTT
Sbjct: 178 VEARDIDLVMTQAGVSRSKAVKALKSHDGDIVSAIMELTT 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483345|gb|ABK93574.1| unknown [Populus trichocarpa]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 163/206 (79%), Positives = 187/206 (90%), Gaps = 2/206 (0%)

Query: 8   VETPVEEP-EKIKPQDEDEPVVEDVKDDEEEDDDHDNDDDDEDDDDNKDDGAQGSSKQSR 66
           V++ VEE  +K  PQ+EDEPVVED   ++E+DD+ +++DD+++DDD+   GA GSSKQSR
Sbjct: 20  VKSTVEETLQKKPPQNEDEPVVED-VKEDEKDDEDEDEDDEDEDDDDDTPGANGSSKQSR 78

Query: 67  SEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDL 126
           SEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDL
Sbjct: 79  SEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDL 138

Query: 127 STQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVMTQAG 186
           S+QLQTQAAQQFRMPDM S++ K DAS+AAA A  +EEEEEVD+TGVEPRDIDLVMTQAG
Sbjct: 139 SSQLQTQAAQQFRMPDMSSMLPKSDASTAAASAPPEEEEEEVDDTGVEPRDIDLVMTQAG 198

Query: 187 VSRSKAVKALKTHNGDIVSAIMELTT 212
           VSR+KAVKAL+T+NGDIVSAIMELTT
Sbjct: 199 VSRTKAVKALQTNNGDIVSAIMELTT 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132584|ref|XP_002321358.1| predicted protein [Populus trichocarpa] gi|222868354|gb|EEF05485.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 140/156 (89%), Positives = 149/156 (95%)

Query: 57  GAQGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYV 116
           GA GSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYV
Sbjct: 70  GANGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYV 129

Query: 117 IFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPR 176
           IFGEAKIEDLS+QLQTQAAQQFRMPDM S++ K DAS+AAA A  +EEEEEVD+TGVEPR
Sbjct: 130 IFGEAKIEDLSSQLQTQAAQQFRMPDMSSMLPKSDASTAAASAPPEEEEEEVDDTGVEPR 189

Query: 177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 212
           DIDLVMTQAGVSR+KAVKAL+T+NGDIVSAIMELTT
Sbjct: 190 DIDLVMTQAGVSRTKAVKALQTNNGDIVSAIMELTT 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816168|ref|XP_002875967.1| nascent polypeptide-associated complex domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297321805|gb|EFH52226.1| nascent polypeptide-associated complex domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 155/210 (73%), Positives = 178/210 (84%), Gaps = 11/210 (5%)

Query: 3   PPAPIVETPVEEPEKIKPQDEDEPVVEDVKDDEEEDDDHDNDDDDEDDDDNKDDGAQGSS 62
           PPA  +    EE EK K Q  DEP+VEDVKDDE      D+DDDD++++D+   G  GSS
Sbjct: 19  PPAAAI---AEELEK-KLQT-DEPIVEDVKDDE------DDDDDDDEEEDDDAQGVSGSS 67

Query: 63  KQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAK 122
           KQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKN+LFFISKPDVFKSP+SETYVIFGEAK
Sbjct: 68  KQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAK 127

Query: 123 IEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVM 182
           IEDLS+QLQTQAAQQFRMP++G+   + +AS+A   AQ +E+EE++DETGVE RDIDLVM
Sbjct: 128 IEDLSSQLQTQAAQQFRMPEIGATSQRAEASAATVEAQVEEDEEDIDETGVEARDIDLVM 187

Query: 183 TQAGVSRSKAVKALKTHNGDIVSAIMELTT 212
           TQAGVSRSKAV ALK+H+GDIVSAIMELTT
Sbjct: 188 TQAGVSRSKAVNALKSHDGDIVSAIMELTT 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13899101|gb|AAK48972.1|AF370545_1 alpha NAC-like protein [Arabidopsis thaliana] gi|18377570|gb|AAL66951.1| alpha NAC-like protein [Arabidopsis thaliana]

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 155/220 (70%), Positives = 180/220 (81%), Gaps = 16/220 (7%)

Query: 3   PPAPIVETPVEEPEKI----------KPQDEDEPVVEDVKDDEEEDDDHDNDDDDEDDDD 52
           PPA + E+   +PE+           K    DEP+VEDVKDDE      D+DDDDE+++D
Sbjct: 4   PPAVVTESADGQPEQPPVTAIAEELEKKLQTDEPIVEDVKDDE------DDDDDDEEEED 57

Query: 53  NKDDGAQGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNS 112
           +   G  GSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKN+LFFISKPDVFKSP+S
Sbjct: 58  DDAQGVSGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHS 117

Query: 113 ETYVIFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETG 172
           ETYVIFGEAKIEDLS+QLQTQAAQQF+MP++G+   + +AS+A   AQ +E+EEE+DETG
Sbjct: 118 ETYVIFGEAKIEDLSSQLQTQAAQQFKMPEIGATSQRAEASTATVEAQVEEDEEEIDETG 177

Query: 173 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 212
           VE RDIDLVMTQAGVSRSKAVKALK+H+GDIVSAIMELTT
Sbjct: 178 VEARDIDLVMTQAGVSRSKAVKALKSHDGDIVSAIMELTT 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502016|gb|AFK39074.1| unknown [Lotus japonicus]

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 155/200 (77%), Positives = 174/200 (87%), Gaps = 4/200 (2%)

Query: 16  EKIKPQDEDEPVVEDVKDDEEEDDDHDNDDDDEDDDDNKDDGAQGSS---KQSRSEKKSR 72
           +K +PQ++D P+VED KD ++++ D D D+DD+D+DD+K+DGA G S   KQSRSEKKSR
Sbjct: 29  KKPQPQEDDAPIVEDAKDYDKDEADDDEDEDDDDEDDDKEDGALGGSEGSKQSRSEKKSR 88

Query: 73  KAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSTQLQT 132
           KAMLKLG+KPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLS+QLQT
Sbjct: 89  KAMLKLGLKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQT 148

Query: 133 QAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVMTQAGVSRSKA 192
           QAAQQFRMPDMGSVMAK D  +AA G Q +EEEE  +   VEP DIDLVMTQAGVSR KA
Sbjct: 149 QAAQQFRMPDMGSVMAKQDQGTAADGGQPEEEEEVDETG-VEPHDIDLVMTQAGVSRGKA 207

Query: 193 VKALKTHNGDIVSAIMELTT 212
           VKALKTHNGDIV AIMELTT
Sbjct: 208 VKALKTHNGDIVGAIMELTT 227

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725181|ref|NP_001238363.1| uncharacterized protein LOC100499943 [Glycine max] gi|255627897|gb|ACU14293.1| unknown [Glycine max]

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 154/197 (78%), Positives = 175/197 (88%)

Query: 16  EKIKPQDEDEPVVEDVKDDEEEDDDHDNDDDDEDDDDNKDDGAQGSSKQSRSEKKSRKAM 75
           +K  PQ++D P+VEDVKDD++E+ + +++DDD+DD ++   G     KQSRSEKKSRKAM
Sbjct: 29  KKAHPQEDDAPIVEDVKDDDKEETEDEDEDDDDDDKEDDAQGGAEGGKQSRSEKKSRKAM 88

Query: 76  LKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSTQLQTQAA 135
           LKLG+KPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETY+IFGEAKIEDLS+QLQTQAA
Sbjct: 89  LKLGLKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYIIFGEAKIEDLSSQLQTQAA 148

Query: 136 QQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVMTQAGVSRSKAVKA 195
           QQF MPD+GSV+AK D  +AAA AQ +EEEEEVDETGVEP DIDLVMTQAGVSRSKAVKA
Sbjct: 149 QQFGMPDVGSVLAKQDQDAAAAAAQPEEEEEEVDETGVEPHDIDLVMTQAGVSRSKAVKA 208

Query: 196 LKTHNGDIVSAIMELTT 212
           LKTHNGDIV AIMELTT
Sbjct: 209 LKTHNGDIVGAIMELTT 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
TAIR|locus:2114703	217	NACA2 "AT3G49470" [Arabidopsis	0.735	0.718	0.589	6.7e-43
TAIR|locus:2127681	212	AT4G10480 "AT4G10480" [Arabido	0.655	0.655	0.618	1.1e-37
TAIR|locus:2159093	204	NACA3 "AT5G13850" [Arabidopsis	0.655	0.681	0.564	6.5e-35
TAIR|locus:2092462	203	AT3G12390 [Arabidopsis thalian	0.636	0.665	0.582	6.5e-35
TAIR|locus:2206975	209	NACA5 "AT1G33040" [Arabidopsis	0.655	0.665	0.561	1.7e-34
UNIPROTKB|Q5E9A1	215	NACA "Nascent polypeptide-asso	0.641	0.632	0.463	1.5e-26
UNIPROTKB|Q13765	215	NACA "Nascent polypeptide-asso	0.641	0.632	0.463	1.5e-26
MGI|MGI:106095	215	Naca "nascent polypeptide-asso	0.641	0.632	0.463	1.5e-26
FB|FBgn0086904	217	Nacalpha "Nascent polypeptide	0.641	0.626	0.445	2.5e-26
UNIPROTKB|H9KYU8	192	NACA2 "Uncharacterized protein	0.636	0.703	0.452	2.2e-25

TAIR|locus:2114703 NACA2 "AT3G49470" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 92/156 (58%), Positives = 101/156 (64%)

Query:    57 GAQGXXXXXXXXXXXXXAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYV 116
             G  G             AMLKLGMKPVTGVSRVTIKRTKN+LFFISKPDVFKSP+SETYV
Sbjct:    62 GVSGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYV 121

Query:   117 IFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPR 176
             IFGEAKIED            FRMP++G+   + +                        R
Sbjct:   122 IFGEAKIEDLSSQLQTQAAQQFRMPEIGATSQRAEASTATVEAQVEEDEEEIDETGVEAR 181

Query:   177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 212
             DIDLVMTQAGVSRSKAVKALK+H+GDIVSAIMELTT
Sbjct:   182 DIDLVMTQAGVSRSKAVKALKSHDGDIVSAIMELTT 217

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2127681 AT4G10480 "AT4G10480" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 86/139 (61%), Positives = 94/139 (67%)

Query:    74 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXX 133
             AMLKLGMKPVT VSRVTIKR+KN+LF ISKPDVFKSPNSETYVIFGEAKI+D        
Sbjct:    74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQ 133

Query:   134 XXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAV 193
                 F+MPD+ S++   D                        +DIDLVMTQAGVSR KAV
Sbjct:   134 AAQRFKMPDVASMIPNTDGSEAATVAQEEEDDEDVDETGVEAKDIDLVMTQAGVSRPKAV 193

Query:   194 KALKTHNGDIVSAIMELTT 212
             KALK  NGDIVSAIMELTT
Sbjct:   194 KALKESNGDIVSAIMELTT 212

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2159093 NACA3 "AT5G13850" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 79/140 (56%), Positives = 96/140 (68%)

Query:    74 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXX 133
             AMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGEAKIED        
Sbjct:    65 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQLQSQ 124

Query:   134 XXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXX-PRDIDLVMTQAGVSRSKA 192
                 F+ P++ +V+++ +                        P+DI+LVMTQAGVS+ +A
Sbjct:   125 AAEQFKAPNLSNVISQGETSSAATAAAVQDDDDEEVDEEGVEPKDIELVMTQAGVSKPRA 184

Query:   193 VKALKTHNGDIVSAIMELTT 212
             VKALK  NGDIVSAIMELTT
Sbjct:   185 VKALKLANGDIVSAIMELTT 204

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0051604 "protein maturation" evidence=RCA

TAIR|locus:2092462 AT3G12390 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 81/139 (58%), Positives = 95/139 (68%)

Query:    74 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXX 133
             AMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGEAKIED        
Sbjct:    69 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQIQSQ 128

Query:   134 XXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAV 193
                 F+ PD+ +V++K +                       P+DI+LVMTQAGVSR  AV
Sbjct:   129 AAEQFKAPDLSNVISKGESSSAAVVQDDEEVDEEGVE----PKDIELVMTQAGVSRPNAV 184

Query:   194 KALKTHNGDIVSAIMELTT 212
             KALK  +GDIVSAIMELTT
Sbjct:   185 KALKAADGDIVSAIMELTT 203

GO:0005634 "nucleus" evidence=ISM

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

TAIR|locus:2206975 NACA5 "AT1G33040" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 78/139 (56%), Positives = 93/139 (66%)

Query:    74 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXX 133
             A+LKLGMKPV+ VSRVTIKR KN+LF ISKPDV+KSPN+ETYVIFGEAK++D        
Sbjct:    71 AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSSQLQTQ 130

Query:   134 XXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAV 193
                 F+MPD+ S++                            RDIDLVMTQAGVS++KAV
Sbjct:   131 AAQRFKMPDVTSMLPNAGSEATMAPLAEEEDEDDVDDTGVEARDIDLVMTQAGVSKAKAV 190

Query:   194 KALKTHNGDIVSAIMELTT 212
              ALK ++GDIVSAIMELTT
Sbjct:   191 SALKANDGDIVSAIMELTT 209

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5E9A1 NACA "Nascent polypeptide-associated complex subunit alpha" [Bos taurus (taxid:9913)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 64/138 (46%), Positives = 87/138 (63%)

Query:    74 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXX 133
             AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED        
Sbjct:    79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 138

Query:   134 XXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAV 193
                 F++   G  ++                           +DI+LVM+QA VSR+KAV
Sbjct:   139 AAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAV 196

Query:   194 KALKTHNGDIVSAIMELT 211
             +ALK ++ DIV+AIMELT
Sbjct:   197 RALKNNSNDIVNAIMELT 214

GO:0005634 "nucleus" evidence=ISS

GO:0017025 "TBP-class protein binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q13765 NACA "Nascent polypeptide-associated complex subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 64/138 (46%), Positives = 87/138 (63%)

Query:    74 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXX 133
             AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED        
Sbjct:    79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 138

Query:   134 XXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAV 193
                 F++   G  ++                           +DI+LVM+QA VSR+KAV
Sbjct:   139 AAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAV 196

Query:   194 KALKTHNGDIVSAIMELT 211
             +ALK ++ DIV+AIMELT
Sbjct:   197 RALKNNSNDIVNAIMELT 214

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005854 "nascent polypeptide-associated complex" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003231 "cardiac ventricle development" evidence=ISS

GO:0010664 "negative regulation of striated muscle cell apoptotic process" evidence=ISS

GO:0043403 "skeletal muscle tissue regeneration" evidence=ISS

GO:0048633 "positive regulation of skeletal muscle tissue growth" evidence=ISS

GO:0048742 "regulation of skeletal muscle fiber development" evidence=ISS

GO:0061384 "heart trabecula morphogenesis" evidence=ISS

GO:1901227 "negative regulation of transcription from RNA polymerase II promoter involved in heart development" evidence=ISS

GO:1901228 "positive regulation of transcription from RNA polymerase II promoter involved in heart development" evidence=ISS

GO:2000138 "positive regulation of cell proliferation involved in heart morphogenesis" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0017025 "TBP-class protein binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

MGI|MGI:106095 Naca "nascent polypeptide-associated complex alpha polypeptide" [Mus musculus (taxid:10090)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 64/138 (46%), Positives = 87/138 (63%)

Query:    74 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXX 133
             AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED        
Sbjct:    79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 138

Query:   134 XXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAV 193
                 F++   G  ++                           +DI+LVM+QA VSR+KAV
Sbjct:   139 AAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAV 196

Query:   194 KALKTHNGDIVSAIMELT 211
             +ALK ++ DIV+AIMELT
Sbjct:   197 RALKNNSNDIVNAIMELT 214

GO:0003677 "DNA binding" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0017025 "TBP-class protein binding" evidence=IDA

FB|FBgn0086904 Nacalpha "Nascent polypeptide associated complex protein alpha subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 61/137 (44%), Positives = 84/137 (61%)

Query:    75 MLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXX 134
             MLKLG+K + GV+RVTI+++KNILF I+ PDV+K+P+S+TY++FGEAKIED         
Sbjct:    80 MLKLGLKQIQGVNRVTIRKSKNILFVINNPDVYKNPHSDTYIVFGEAKIEDLSQQAQVAA 139

Query:   135 XXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAVK 194
                F+ P+     A                           +DI+LV+TQA  +R+KA+K
Sbjct:   140 AEKFKAPEAAGA-ADSVGATTSVAPIAEEDEEDVDDTGVDEKDIELVITQANTTRAKAIK 198

Query:   195 ALKTHNGDIVSAIMELT 211
             ALK +N DIV+AIMELT
Sbjct:   199 ALKNNNNDIVNAIMELT 215

GO:0048477 "oogenesis" evidence=IMP

GO:0005854 "nascent polypeptide-associated complex" evidence=ISS;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|H9KYU8 NACA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 62/137 (45%), Positives = 85/137 (62%)

Query:    74 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXX 133
             AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED        
Sbjct:    56 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLA 115

Query:   134 XXXXFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXXPRDIDLVMTQAGVSRSKAV 193
                 F++   G  ++                           +DI+LVM+QA VSR+KAV
Sbjct:   116 AAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAV 173

Query:   194 KALKTHNGDIVSAIMEL 210
             +ALK ++ DIV+AIM L
Sbjct:   174 RALKNNSNDIVNAIMAL 190

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0017025 "TBP-class protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94518	NACA_DROME	No assigned EC number	0.5533	0.7028	0.6866	yes	no
Q13765	NACA_HUMAN	No assigned EC number	0.6133	0.6981	0.6883	yes	no
Q8AWF2	NACA_ORENI	No assigned EC number	0.6266	0.6981	0.6883	yes	no
Q9M612	NACA_PINTA	No assigned EC number	0.7215	0.7216	0.7463	N/A	no
A2R4V1	NACA_ASPNC	No assigned EC number	0.4292	0.8773	0.9207	yes	no
Q5AYK0	NACA_EMENI	No assigned EC number	0.5030	0.7311	0.7635	yes	no
Q2U955	NACA_ASPOR	No assigned EC number	0.4285	0.8537	0.8960	yes	no
Q68F90	NACA_XENTR	No assigned EC number	0.6133	0.6981	0.6915	yes	no
Q4I2J8	NACA_GIBZE	No assigned EC number	0.4	0.8773	0.8899	yes	no
Q5E9A1	NACA_BOVIN	No assigned EC number	0.6133	0.6981	0.6883	yes	no
Q86S66	NACA_CAEEL	No assigned EC number	0.54	0.6792	0.7309	yes	no
Q94JX9	NACA2_ARATH	No assigned EC number	0.7090	0.9622	0.9400	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
pfam01849	50	pfam01849, NAC, NAC domain	8e-16
COG1308	122	COG1308, EGD2, Transcription factor homologous to	9e-14
PRK06369	115	PRK06369, nac, nascent polypeptide-associated comp	2e-09
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	2e-04
PRK12298	390	PRK12298, obgE, GTPase CgtA; Reviewed	2e-04
pfam02724	583	pfam02724, CDC45, CDC45-like protein	3e-04
pfam02724	583	pfam02724, CDC45, CDC45-like protein	5e-04
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	5e-04
TIGR00264	116	TIGR00264, TIGR00264, alpha-NAC-related protein	0.001
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.002
pfam02724	583	pfam02724, CDC45, CDC45-like protein	0.003
pfam02724	583	pfam02724, CDC45, CDC45-like protein	0.004
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.004
PTZ00007	337	PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr	0.004

>gnl|CDD|202009 pfam01849, NAC, NAC domain

 Score = 68.3 bits (168), Expect = 8e-16
 Identities = 25/49 (51%), Positives = 33/49 (67%)

Query: 77  KLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 125
           KLG+KP+ GV  VTI++    +   + P V KSP S TYV+FGEAK +D
Sbjct: 2   KLGLKPIEGVEEVTIRKKDGKVLVFNNPKVQKSPGSNTYVVFGEAKEKD 50

Length = 50

>gnl|CDD|224227 COG1308, EGD2, Transcription factor homologous to NACalpha-BTF3 [Transcription]

 Score = 64.7 bits (158), Expect = 9e-14
 Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 38/147 (25%)

Query: 69  KKSRKAMLKLG--MKPVTGVSRVTIKRTKNILFFISKPDVF--KSPNSETYVIFGEAKIE 124
           +K +K M ++G  ++ + GV RV IK        I  P V   K+   +TY I G+   +
Sbjct: 9   RKLKKLMKQMGIDVEELDGVERVIIKLKDTEYV-IENPQVTVMKAMGQKTYQISGDPSAK 67

Query: 125 DLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVMTQ 184
           +                                 A +  EE+ VDE+ +   DI LVM Q
Sbjct: 68  E---------------------------------AVKKPEEKTVDESDISEEDIKLVMEQ 94

Query: 185 AGVSRSKAVKALKTHNGDIVSAIMELT 211
           AGVSR +A+KAL+   GD+  AIM+LT
Sbjct: 95  AGVSREEAIKALEEAGGDLAEAIMKLT 121

Length = 122

>gnl|CDD|235786 PRK06369, nac, nascent polypeptide-associated complex protein; Reviewed

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 40/149 (26%), Positives = 57/149 (38%), Gaps = 49/149 (32%)

Query: 69  KKSRKAMLKLGMKPVT--GVSRVTIKRTKNILFFISKPDV--FKSPNSETYVIFGEAKIE 124
           +K ++ M ++G+  V    V  V I R K+       P V    +   +TY I GE    
Sbjct: 8   RKMKQMMKQMGID-VEELDVEEVII-RLKDKEIVFENPQVTVMDAQGQKTYQIVGEP--- 62

Query: 125 DLSTQLQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEP--RDIDLVM 182
                                                 EE E+  E  VE    DI+LV 
Sbjct: 63  --------------------------------------EEVEKEAEKEVEIPEEDIELVA 84

Query: 183 TQAGVSRSKAVKALKTHNGDIVSAIMELT 211
            Q GVS  +A KAL+  NGD+  AI++L+
Sbjct: 85  EQTGVSEEEARKALEEANGDLAEAILKLS 113

Length = 115

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 17/74 (22%), Positives = 36/74 (48%)

Query: 22  DEDEPVVEDVKDDEEEDDDHDNDDDDEDDDDNKDDGAQGSSKQSRSEKKSRKAMLKLGMK 81
           D++E  +E+ +++EE D D D+ +DDE + D++++G +   ++ R +KK R         
Sbjct: 39  DDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKKKKRVKTKAYKEP 98

Query: 82  PVTGVSRVTIKRTK 95
                 +       
Sbjct: 99  TKKKKKKDPTAAKS 112

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 9   ETPVEEPEKIKPQDEDEPVVEDVKDDEEEDDDHDNDDDDEDDDD 52
               E PEK++   +D    +  + +EE+DDD D+D D++DD+ 
Sbjct: 340 AEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEG 383

Length = 390

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 22  DEDEPVVEDVKDDEEEDDDHDNDDDDEDDDDNKDDGAQGSSKQSRSEKKSRK 73
           ++D+   E   D+E+E+     DD+D+DDDD+ DD A       R  ++   
Sbjct: 125 EDDDDDEES--DEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREW 174

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 20/69 (28%), Positives = 36/69 (52%)

Query: 7   IVETPVEEPEKIKPQDEDEPVVEDVKDDEEEDDDHDNDDDDEDDDDNKDDGAQGSSKQSR 66
           I E   +EP       + E   +D ++ +EED++    +DDEDDDD+ DD    + ++S 
Sbjct: 106 IEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSL 165

Query: 67  SEKKSRKAM 75
             ++ R+  
Sbjct: 166 ERRRRRREW 174

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 29  EDVKDDEEEDDDHDNDDDDEDDDDNKDDGAQGSS-KQSRSEKKSRKAMLKL 78
           +D+ D+EEE    D DDDDEDD  + DD  +  S  +       ++   KL
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVSEKL 273

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

>gnl|CDD|232898 TIGR00264, TIGR00264, alpha-NAC-related protein

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 5/48 (10%)

Query: 163 EEEEEVDETGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL 210
           EEEEE+ E      DI+LVM Q  VS+ +A +AL+   GD+  AIM+L
Sbjct: 72  EEEEEITED-----DIELVMKQCNVSKEEARRALEECGGDLAEAIMKL 114

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator [Unknown function, General]. Length = 116

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 22  DEDEPVVEDVKDDEEEDDDHDNDDDDEDDDDNKDDGAQGSSKQSRSEKKSRKA 74
           D+ E   EDV   +EE+D+ D D DDEDD++ +++  +   K+S    +S   
Sbjct: 340 DDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSELP 392

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 13/70 (18%), Positives = 37/70 (52%)

Query: 8   VETPVEEPEKIKPQDEDEPVVEDVKDDEEEDDDHDNDDDDEDDDDNKDDGAQGSSKQSRS 67
           +E  +++  +      D    +D  ++ +E+D+  +  +D++DDD+ DD    ++++   
Sbjct: 106 IEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSL 165

Query: 68  EKKSRKAMLK 77
           E++ R+   +
Sbjct: 166 ERRRRRREWE 175

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 21  QDEDEPVVEDVKDDEEEDDDHDNDDDDEDDDDNKDDGAQGSS-KQSRSEKKSRKAML 76
           +D+D+    D +D+E    + D DDDD+DDDD+     +    ++ R E + ++A L
Sbjct: 125 EDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAEL 181

CDC45 is an essential gene required for initiation of DNA replication in S. cerevisiae, forming a complex with MCM5/CDC46. Homologues of CDC45 have been identified in human, mouse and smut fungus among others. Length = 583

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 2/56 (3%)

Query: 22  DEDEPVVEDVKDDEEEDDDHDNDDDDEDD--DDNKDDGAQGSSKQSRSEKKSRKAM 75
           DEDE   +D  ++EEED D  ++++DE+D   D++DD  +   ++ + +KKS ++ 
Sbjct: 332 DEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAEST 387

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 22  DEDEPVVEDVKDDEEEDDDHDNDDDDEDDD---DNKDDGAQGSSKQSRSEKK 70
           ++ +   ++  DD +  D  D+   D + D   + +DD  +  S  ++S + 
Sbjct: 282 EDSDYSSDEDDDDYDSYDSSDSASSDSNSDVDTNEEDDRGEKESNGAKSNEL 333

Length = 337

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
KOG2239	209	consensus Transcription factor containing NAC and	100.0
PRK06369	115	nac nascent polypeptide-associated complex protein	100.0
COG1308	122	EGD2 Transcription factor homologous to NACalpha-B	99.98
TIGR00264	116	alpha-NAC-related protein. This hypothetical prote	99.97
PF01849	58	NAC: NAC domain; InterPro: IPR002715 Nascent polyp	99.83
KOG2240	162	consensus RNA polymerase II general transcription	98.59
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	97.67
KOG3450	119	consensus Huntingtin interacting protein HYPK [Gen	97.6
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	95.45
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	95.3
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	95.0
COG2103	298	Predicted sugar phosphate isomerase [General funct	86.12
COG4008	153	Predicted metal-binding transcription factor [Tran	85.54
PRK05441	299	murQ N-acetylmuramic acid-6-phosphate etherase; Re	83.99

>KOG2239 consensus Transcription factor containing NAC and TS-N domains [Transcription]

Probab=100.00  E-value=6.2e-55  Score=372.07  Aligned_cols=156  Identities=64%  Similarity=0.921  Sum_probs=139.0

Q ss_pred             CCCCCCcccCcCHHHHHHHHHHcCCeecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccceecchhhHHHHHHH
Q 028211           56 DGAQGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSTQLQTQAA  135 (212)
Q Consensus        56 ~~~~~~~k~sr~eKK~rK~mkKLGlk~I~gV~rVtIrk~d~~~fvI~~P~V~ks~gs~TYvVfGeak~edls~q~q~~aa  135 (212)
                      ..+.+++||||++||.||+|.||||++|+||+|||||+++|++|+|++|+|||+|+++||+|||+++++++++|+|.+|+
T Consensus        54 ~~~~~~akqsrsekKark~m~KLGlk~v~gV~RVti~ksKNilfvI~kPdVyKsp~sdtYiiFGeakiedls~q~q~~aa  133 (209)
T KOG2239|consen   54 EEPVAKAKQSRSEKKARKAMLKLGLKQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIIFGEAKIEDLSQQAQMQAA  133 (209)
T ss_pred             ccchhhhhcchHHHHHHHHHHhcCCccccceeEEEEEecccEEEEecCCceeccCCCceEEEecccccchhHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCCCCCCcchhhccCCCccchhhhccCCCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhcC
Q 028211          136 QQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT  212 (212)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~a~~~~~~e~eeevd~~gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~Lt~  212 (212)
                      ++|+.+..++........+. .+.++++++++||++||+.+||+|||+|+||||++||+|||+|+||||||||+||+
T Consensus       134 e~fk~~~~~~~~~~~~~~~~-~~~~ee~dEeeVD~tgve~kDIeLVmsQanvSR~kAVkALk~~~~DiVnAIM~LT~  209 (209)
T KOG2239|consen  134 ERFKVPQEAPGLIQEDTSAT-PPAQEESDEEEVDETGVEAKDIELVMSQANVSRAKAVKALKNNNNDIVNAIMELTK  209 (209)
T ss_pred             HhccCCccccccccccccCC-CccccccchhccCcccCchhhHHHHHHHhhhhHHHHHHHHHhccchHHHHHHHhhC
Confidence            99998776655444333331 11223456677999999999999999999999999999999999999999999985

>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed

Probab=100.00  E-value=1.1e-37  Score=247.56  Aligned_cols=106  Identities=30%  Similarity=0.487  Sum_probs=97.0

Q ss_pred             cCHHHHHHHHHHcCCe--ecCCceEEEEEecCceEEEecCCeEE--eeCCCceEEEeccceecchhhHHHHHHHHhhcCC
Q 028211           66 RSEKKSRKAMLKLGMK--PVTGVSRVTIKRTKNILFFISKPDVF--KSPNSETYVIFGEAKIEDLSTQLQTQAAQQFRMP  141 (212)
Q Consensus        66 r~eKK~rK~mkKLGlk--~I~gV~rVtIrk~d~~~fvI~~P~V~--ks~gs~TYvVfGeak~edls~q~q~~aa~~~~~~  141 (212)
                      =||||+||||+||||+  +| ||+||+|++.+ ..|+|++|+||  +++|++||+|||+++.++++++.           
T Consensus         5 ~nprk~rkmmkkmGik~e~i-~v~~V~Ir~~~-~~~Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~~-----------   71 (115)
T PRK06369          5 MNPRKMKQMMKQMGIDVEEL-DVEEVIIRLKD-KEIVFENPQVTVMDAQGQKTYQIVGEPEEVEKEAEK-----------   71 (115)
T ss_pred             CCHHHHHHHHHHcCCcchhc-CeEEEEEEeCC-EEEEEcCCeEEEEecCCCcEEEEEeccEEeeccccc-----------
Confidence            4689999999999999  99 99999999987 89999999999  78999999999999997764310           


Q ss_pred             CCCCCCCCCCcchhhccCCCccchhhhccCCCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhcC
Q 028211          142 DMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT  212 (212)
Q Consensus       142 ~~~~~~~~~~~~~~a~~~~~~e~eeevd~~gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~Lt~  212 (212)
                                                  +++|+++||+|||+||||||++|++||++||||||+|||.|+.
T Consensus        72 ----------------------------~~~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~~  114 (115)
T PRK06369         72 ----------------------------EVEIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLSS  114 (115)
T ss_pred             ----------------------------cCCCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHhc
Confidence                                        2479999999999999999999999999999999999999973

>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]

Probab=99.98  E-value=5.3e-33  Score=222.18  Aligned_cols=113  Identities=40%  Similarity=0.611  Sum_probs=95.5

Q ss_pred             cCHHHHHHHHHHcCC--eecCCceEEEEEecCceEEEecCCeEEe--eCCCceEEEeccceecchhhHHHHHHHHhhcCC
Q 028211           66 RSEKKSRKAMLKLGM--KPVTGVSRVTIKRTKNILFFISKPDVFK--SPNSETYVIFGEAKIEDLSTQLQTQAAQQFRMP  141 (212)
Q Consensus        66 r~eKK~rK~mkKLGl--k~I~gV~rVtIrk~d~~~fvI~~P~V~k--s~gs~TYvVfGeak~edls~q~q~~aa~~~~~~  141 (212)
                      =|+|+|+|+|++|||  ++|+||.||+|++.++. |+|++|.||.  ++|+.||+|.|.+..         .++      
T Consensus         6 mnpr~l~k~mkqmGi~~eeld~v~~V~i~~kd~e-~vi~~P~V~~~~~~g~~~yqi~g~~~~---------~~~------   69 (122)
T COG1308           6 MNPRKLKKLMKQMGIDVEELDGVERVIIKLKDTE-YVIENPQVTVMKAMGQKTYQISGDPSA---------KEA------   69 (122)
T ss_pred             CCHHHHHHHHHHhCCCceeccCceEEEEEcCCce-EEeeCCcEEeehhcchhHHHHhcchhh---------hcc------
Confidence            468999999999995  59999999999998876 9999999986  589999999997630         000      


Q ss_pred             CCCCCCCCCCcchhhccCCCccchhhhccCCCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhcC
Q 028211          142 DMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT  212 (212)
Q Consensus       142 ~~~~~~~~~~~~~~a~~~~~~e~eeevd~~gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~Lt~  212 (212)
                                     .   +..++..+++.+|+++||+|||+||||||++|||||+++|||||+|||+||.
T Consensus        70 ---------------~---~~~ee~~~d~~~i~eeDIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~L~~  122 (122)
T COG1308          70 ---------------V---KKPEEKTVDESDISEEDIKLVMEQAGVSREEAIKALEEAGGDLAEAIMKLTE  122 (122)
T ss_pred             ---------------c---ccchhcccccCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHhcC
Confidence                           0   1123445677789999999999999999999999999999999999999984

>TIGR00264 alpha-NAC-related protein

Probab=99.97  E-value=2.6e-31  Score=211.13  Aligned_cols=101  Identities=34%  Similarity=0.513  Sum_probs=86.9

Q ss_pred             HHHHHHHHHcCCe--ecCCceEEEEEecCceEEEecCCeE--EeeCCCceEEEeccceecchhhHHHHHHHHhhcCCCCC
Q 028211           69 KKSRKAMLKLGMK--PVTGVSRVTIKRTKNILFFISKPDV--FKSPNSETYVIFGEAKIEDLSTQLQTQAAQQFRMPDMG  144 (212)
Q Consensus        69 KK~rK~mkKLGlk--~I~gV~rVtIrk~d~~~fvI~~P~V--~ks~gs~TYvVfGeak~edls~q~q~~aa~~~~~~~~~  144 (212)
                      |+||+||+||||+  ++. |.+|+|++.++ .++|++|+|  |+++|+.||||||+++.+++..                
T Consensus        12 ~~mkkmMk~MGi~~~eid-V~~ViIk~~~k-~ivf~~p~V~~m~~~G~~tYqI~G~~~~~~~~~----------------   73 (116)
T TIGR00264        12 KQMQKMMKQMGMEMEDLD-VEEVIIVFDDE-EWIFENPKVQVMDILGVKTYQITGKPKKEKVEE----------------   73 (116)
T ss_pred             HHHHHHHHHcCCCccccc-cEEEEEEeCCc-eEEEecCeeEEEecCCcEEEEEecccEEeeccc----------------
Confidence            3999999999998  466 99999999765 567999987  6789999999999998642210                


Q ss_pred             CCCCCCCcchhhccCCCccchhhhccCCCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhcC
Q 028211          145 SVMAKPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT  212 (212)
Q Consensus       145 ~~~~~~~~~~~a~~~~~~e~eeevd~~gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~Lt~  212 (212)
                                               ..+|+++||+|||+||||||++|++||++||||||+|||.|+.
T Consensus        74 -------------------------~~~i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~L~~  116 (116)
T TIGR00264        74 -------------------------EEEITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIMKLEE  116 (116)
T ss_pred             -------------------------ccCCCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHhhC
Confidence                                     0259999999999999999999999999999999999999973

This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.

>PF01849 NAC: NAC domain; InterPro: IPR002715 Nascent polypeptide-associated complex (NAC) is among the first ribosome-associated entities to bind the nascent polypeptide after peptide bond formation

Probab=99.83  E-value=6.6e-21  Score=134.04  Aligned_cols=58  Identities=48%  Similarity=0.824  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHcCCeecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccceecc
Q 028211           68 EKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED  125 (212)
Q Consensus        68 eKK~rK~mkKLGlk~I~gV~rVtIrk~d~~~fvI~~P~V~ks~gs~TYvVfGeak~ed  125 (212)
                      |||||++|+||||++|+||.||+|++.+|.+|+|++|+||+++|++||+|||++++++
T Consensus         1 ekk~~~~l~klgl~~i~~i~eV~i~~~dg~~~~~~~P~V~~~~~~~tyvV~G~~~~~~   58 (58)
T PF01849_consen    1 EKKLQKMLKKLGLKEIPGIEEVTIRKDDGTVFVFNNPEVQKSPGSNTYVVFGEAEEED   58 (58)
T ss_dssp             -------GHHCT-EEETTEEEEEEEETTTEEEEEESEEEEEETTCCEEEEESEEEEEE
T ss_pred             CHHHHHHHHHcCCcccCCcEEEEEEECCceEEEEcCCeEEEcCCCCEEEEEeeeEEcC
Confidence            6999999999999999999999999999999999999999999999999999998764

The nascent polypeptide-associated complex (NAC) of yeast functions in the targeting process of ribosomes to the ER membrane []. NAC may prevent binding of ribosome nascent chains (RNCs) without a signal sequence to yeast membranes.; PDB: 3MCE_D 3MCB_A 3LKX_B 1TR8_B.

>KOG2240 consensus RNA polymerase II general transcription factor BTF3 and related proteins [Transcription]

Probab=98.59  E-value=3.4e-08  Score=83.04  Aligned_cols=64  Identities=23%  Similarity=0.468  Sum_probs=60.6

Q ss_pred             CcCHHHHHHHHHHcCCeecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccceecchhh
Q 028211           65 SRSEKKSRKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLST  128 (212)
Q Consensus        65 sr~eKK~rK~mkKLGlk~I~gV~rVtIrk~d~~~fvI~~P~V~ks~gs~TYvVfGeak~edls~  128 (212)
                      ....||++.-|+||++..|+||.+|.|++.++.+++|++|.|.++...+||.|+|.++.+.++.
T Consensus        38 ~~ddkKlqs~lkkl~v~~i~~i~evn~~k~~g~Vihf~~~~vqasl~~nTf~ItG~~~~k~l~E  101 (162)
T KOG2240|consen   38 TADDKKLQSSLKKLGVNNIPGIEEVNMFKNDGTVIHFNNPKVQASLAANTFTITGHAETKQLTE  101 (162)
T ss_pred             CcccchhhhhhhhhccccccchhHhhhccccceeEecCCccccccccCCeEEEecCCcccchhh
Confidence            6778999999999999999999999999999999999999999999999999999999887654

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=97.67  E-value=4.3e-05  Score=48.85  Aligned_cols=36  Identities=31%  Similarity=0.479  Sum_probs=31.4

Q ss_pred             CccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211          174 EPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       174 ~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~L  210 (212)
                      +++.|..+++. |+|++.|++||+.++||+-.||.-|
T Consensus         2 ~~~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    2 DEEKVQQLMEM-GFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            45788999999 9999999999999999999998754

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>KOG3450 consensus Huntingtin interacting protein HYPK [General function prediction only]

Probab=97.60  E-value=3.4e-05  Score=61.53  Aligned_cols=42  Identities=31%  Similarity=0.617  Sum_probs=39.2

Q ss_pred             CCCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhcC
Q 028211          171 TGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT  212 (212)
Q Consensus       171 ~gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~Lt~  212 (212)
                      ..|..+||+|||...-+++.-|.+-|++++||+|.|+-.|++
T Consensus        77 V~IkkeDlelImnELei~k~~aer~LrE~~Gdvv~Alral~s  118 (119)
T KOG3450|consen   77 VTIKKEDLELIMNELEISKAAAERSLREHMGDVVEALRALTS  118 (119)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhc
Confidence            458899999999999999999999999999999999998864

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=95.45  E-value=0.026  Score=37.16  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=27.5

Q ss_pred             cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHh
Q 028211          176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIM  208 (212)
Q Consensus       176 eDIeLVm~QagvSRekAikALke~nGDIV~AIM  208 (212)
                      +-|.-.|+=|||++..|+..|+.+|+||-.||=
T Consensus         2 e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~   34 (43)
T PF14555_consen    2 EKIAQFMSITGADEDVAIQYLEANNWDLEAAVN   34 (43)
T ss_dssp             HHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHH
Confidence            357788999999999999999999999988873

>cd00194 UBA Ubiquitin Associated domain

Probab=95.30  E-value=0.03  Score=35.21  Aligned_cols=32  Identities=31%  Similarity=0.502  Sum_probs=26.0

Q ss_pred             hHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211          178 IDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       178 IeLVm~QagvSRekAikALke~nGDIV~AIM~L  210 (212)
                      |..++ ..|.+++.|+.||+.++||+-.|+--|
T Consensus         5 v~~L~-~mGf~~~~~~~AL~~~~~d~~~A~~~L   36 (38)
T cd00194           5 LEQLL-EMGFSREEARKALRATNNNVERAVEWL   36 (38)
T ss_pred             HHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            34444 469999999999999999999987554

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>smart00165 UBA Ubiquitin associated domain

Probab=95.00  E-value=0.041  Score=34.48  Aligned_cols=28  Identities=39%  Similarity=0.542  Sum_probs=23.8

Q ss_pred             hhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211          183 TQAGVSRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       183 ~QagvSRekAikALke~nGDIV~AIM~L  210 (212)
                      ...|.+++.|+.||+.++||+-.|+--|
T Consensus         9 ~~mGf~~~~a~~aL~~~~~d~~~A~~~L   36 (37)
T smart00165        9 LEMGFSREEALKALRAANGNVERAAEYL   36 (37)
T ss_pred             HHcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            3459999999999999999998887543

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>COG2103 Predicted sugar phosphate isomerase [General function prediction only]

Probab=86.12  E-value=0.92  Score=41.81  Aligned_cols=38  Identities=29%  Similarity=0.447  Sum_probs=33.2

Q ss_pred             CCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211          173 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       173 i~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~L  210 (212)
                      +-..-+.+||+-|||+|++|..+|++++|++=-||+-+
T Consensus       232 L~dRa~RIv~~aT~~~~~~A~~~L~~~~~~vK~AIvm~  269 (298)
T COG2103         232 LRDRAVRIVMEATGCSAEEAEALLEEAGGNVKLAIVML  269 (298)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHcCCccHhHHHHH
Confidence            44567899999999999999999999999998887654

>COG4008 Predicted metal-binding transcription factor [Transcription]

Probab=85.54  E-value=1.1  Score=37.18  Aligned_cols=35  Identities=17%  Similarity=0.250  Sum_probs=27.4

Q ss_pred             CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHh
Q 028211          172 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIM  208 (212)
Q Consensus       172 gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM  208 (212)
                      .+..+-++.+..- +||.++|++||.++| |+..|+-
T Consensus       112 ~~~~e~v~v~a~a-~v~~eeAr~aleeag-Dl~~A~k  146 (153)
T COG4008         112 EPPVEEVEVLADA-FVTPEEAREALEEAG-DLRTAMK  146 (153)
T ss_pred             CCcHHHHHHHHHh-cCCHHHHHHHHHHcC-CHHHHHH
Confidence            4555667766654 599999999999995 9999853

>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed

Probab=83.99  E-value=1.3  Score=40.15  Aligned_cols=37  Identities=35%  Similarity=0.529  Sum_probs=30.6

Q ss_pred             CccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211          174 EPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       174 ~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~L  210 (212)
                      -..=+.+||+-+|||+++|.++|..++|.+=-||+-+
T Consensus       235 ~~ra~~i~~~~~~~~~~~a~~~l~~~~~~vk~a~~~~  271 (299)
T PRK05441        235 VDRAVRIVMEATGVSREEAEAALEAADGSVKLAIVMI  271 (299)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHhCCCcHHHHHHH
Confidence            3456778999999999999999999999998887644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	212
3mcb_A	54	Crystal Structure Of Nac Domains Of Human Nascent P		3e-17
3mce_A	61	Crystal Structure Of The Nac Domain Of Alpha Subuni		5e-16
3lkx_B	54	Human Nac Dimerization Domain Length = 54		2e-15

>pdb|3MCB|A Chain A, Crystal Structure Of Nac Domains Of Human Nascent Polypeptide- Associated Complex (Nac) Length = 54

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 48/52 (92%)
Query: 74  AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 125
           AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct: 1   AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED 52

>pdb|3MCE|A Chain A, Crystal Structure Of The Nac Domain Of Alpha Subunit Of Nascent Polypeptide-Associated Complex(Nac) Length = 61

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 46/49 (93%)
Query: 77  KLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 125
           KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct: 10  KLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED 58

>pdb|3LKX|B Chain B, Human Nac Dimerization Domain Length = 54

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 44/47 (93%)
Query: 79  GMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 125
           G++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct: 2   GLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED 48

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
3mcb_A	54	Nascent polypeptide-associated complex subunit Al;	1e-26
3mce_A	61	Nascent polypeptide-associated complex subunit Al;	1e-25
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	2e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B Length = 54

 Score = 95.6 bits (238), Expect = 1e-26
 Identities = 39/54 (72%), Positives = 50/54 (92%)

Query: 74  AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLS 127
           AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIEDLS
Sbjct: 1   AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54

>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens} Length = 61

 Score = 93.3 bits (232), Expect = 1e-25
 Identities = 37/53 (69%), Positives = 48/53 (90%)

Query: 75  MLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLS 127
             KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIEDLS
Sbjct: 8   FSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 60

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis} Length = 102

 Score = 83.8 bits (207), Expect = 2e-21
 Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 42/142 (29%)

Query: 71  SRKAMLKLGMKPVTGVSRVTIK-RTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSTQ 129
           S    + + MK + GV  V IK + K I+    K +V +    +TY + G+A+   L  +
Sbjct: 2   SHMKQMGMDMKDLRGVEEVVIKLKRKEIIIKNPKVNVMEFMGQKTYQVTGKARERSLEAE 61

Query: 130 LQTQAAQQFRMPDMGSVMAKPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVMTQAGVSR 189
           ++                                         +   DI+LVM Q G SR
Sbjct: 62  ME-----------------------------------------IPEDDIELVMNQTGASR 80

Query: 190 SKAVKALKTHNGDIVSAIMELT 211
             A +AL+   GD+  AIM L+
Sbjct: 81  EDATRALQETGGDLAEAIMRLS 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 9e-05
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 33/128 (25%)

Query: 94  TKNILFFISKP---DVFKSPNSE--TYVIFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMA 148
            K+IL   SK     +  S ++   T  +F            Q +  Q+F    +  V+ 
Sbjct: 42  PKSIL---SKEEIDHIIMSKDAVSGTLRLF------WTLLSKQEEMVQKF----VEEVL- 87

Query: 149 KPD----ASSAAAGAQQDEEEEEVDETGVEP--RDIDLVMTQAGVSRSKAVKALKTHNGD 202
           + +     S      +Q      +     +    D   V  +  VSR +    L+     
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-VFAKYNVSRLQPYLKLRQ---- 142

Query: 203 IVSAIMEL 210
              A++EL
Sbjct: 143 ---ALLEL 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
1tr8_A	102	Conserved protein (MTH177); chaperones, nascent po	100.0
3mce_A	61	Nascent polypeptide-associated complex subunit Al;	99.86
3mcb_A	54	Nascent polypeptide-associated complex subunit Al;	99.85
3mcb_B	58	Transcription factor BTF3; beta-barrel like struct	99.27
3lkx_A	66	Transcription factor BTF3; beta-barrel, chaperone;	99.24
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	98.52
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	98.19
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	97.07
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	95.16
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	94.78
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	94.16
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	93.82
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	93.78
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	93.64
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	93.52
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	93.43
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	93.42
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	92.89
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	92.65
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	92.62
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	92.5
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	92.49
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	91.95
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	91.93
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	91.71
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	91.27
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	90.85
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	90.48
1v92_A	46	NSFL1 cofactor P47; 3-helix bundle, recombination;	89.83
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	89.32
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	89.22
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	88.71
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	87.16
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	86.76
2dal_A	62	Protein KIAA0794; FAS associted factor 1, UBA-like	86.44
2dna_A	67	Unnamed protein product; ubiquitin associated doma	85.09
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	84.38
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	84.02
2dzl_A	66	Protein FAM100B; UBA-like domain, structural genom	83.56
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	83.38
2cp8_A	54	NEXT to BRCA1 gene 1 protein; UBA domain, structur	83.07
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	80.47

>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}

Probab=100.00  E-value=2.7e-36  Score=233.95  Aligned_cols=97  Identities=37%  Similarity=0.558  Sum_probs=81.5

Q ss_pred             HHHHHcCC--eecCCceEEEEEecCceEEEecCCeEEe--eCCCceEEEeccceecchhhHHHHHHHHhhcCCCCCCCCC
Q 028211           73 KAMLKLGM--KPVTGVSRVTIKRTKNILFFISKPDVFK--SPNSETYVIFGEAKIEDLSTQLQTQAAQQFRMPDMGSVMA  148 (212)
Q Consensus        73 K~mkKLGl--k~I~gV~rVtIrk~d~~~fvI~~P~V~k--s~gs~TYvVfGeak~edls~q~q~~aa~~~~~~~~~~~~~  148 (212)
                      |||+||||  ++|+||+||+||+.+ .+|||++|+||+  ++|++||+|||+++.+++.                     
T Consensus         2 k~lkKLGl~~~~I~gV~eV~i~k~d-~~iv~~~P~V~~~~~~~~~Ty~I~Ge~~~~d~~---------------------   59 (102)
T 1tr8_A            2 SHMKQMGMDMKDLRGVEEVVIKLKR-KEIIIKNPKVNVMEFMGQKTYQVTGKARERSLE---------------------   59 (102)
T ss_dssp             --------CCEEECCCCEEEEECSS-EEEEEESCEEEEEEETTEEEEEEESCEEEEEEE---------------------
T ss_pred             chHHHcCCCceeCCCcEEEEEEeCC-EEEEECCCEEEEEcCCCCcEEEEEcCceeeccc---------------------
Confidence            68999999  799999999999998 899999999996  8999999999999987641                     


Q ss_pred             CCCcchhhccCCCccchhhhccCCCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhc
Q 028211          149 KPDASSAAAGAQQDEEEEEVDETGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT  211 (212)
Q Consensus       149 ~~~~~~~a~~~~~~e~eeevd~~gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~Lt  211 (212)
                                       +   ++||+++||+|||+||||||++|++||++||||||+|||.||
T Consensus        60 -----------------~---e~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~Lt  102 (102)
T 1tr8_A           60 -----------------A---EMEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRLS  102 (102)
T ss_dssp             -----------------E---ECCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred             -----------------c---cCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence                             0   158999999999999999999999999999999999999996

>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}

Probab=99.86  E-value=7.7e-23  Score=145.62  Aligned_cols=57  Identities=65%  Similarity=1.073  Sum_probs=51.1

Q ss_pred             HHHHHHcCCeecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccceecchhh
Q 028211           72 RKAMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLST  128 (212)
Q Consensus        72 rK~mkKLGlk~I~gV~rVtIrk~d~~~fvI~~P~V~ks~gs~TYvVfGeak~edls~  128 (212)
                      |++|+||||++|+||+||+|||++|++|+|++|+||++++++||+|||+++.+|+++
T Consensus         5 ~kal~KLglk~v~gI~rVtirK~~~~lf~i~~PdV~ksp~snTyvVFGeak~ed~~q   61 (61)
T 3mce_A            5 SPEFSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQ   61 (61)
T ss_dssp             SCCGGGTTCEECSSEEEEEEEETTTEEEEESSCEEEEC---CEEEEESCEEEECCC-
T ss_pred             HHHHHHcCCeECCCEEEEEEEecCCEEEEECCCcEEEcCCCCeEEEEcccccccCCC
Confidence            568999999999999999999999999999999999999999999999999999863

>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B

Probab=99.85  E-value=4.2e-22  Score=138.71  Aligned_cols=54  Identities=72%  Similarity=1.169  Sum_probs=51.9

Q ss_pred             HHHHcCCeecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccceecchh
Q 028211           74 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLS  127 (212)
Q Consensus        74 ~mkKLGlk~I~gV~rVtIrk~d~~~fvI~~P~V~ks~gs~TYvVfGeak~edls  127 (212)
                      +|+||||++|+||+||+|||++|.+|+|++|+||++++++||+|||+++.+|++
T Consensus         1 al~KLglk~v~gI~rVti~K~~~~lf~i~~P~V~ksp~s~TyvVfGeak~ed~~   54 (54)
T 3mcb_A            1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS   54 (54)
T ss_dssp             CGGGGTCEECTTEEEEEEESSSSEEEEESSCEEEECTTSSEEEEESCEEEEECC
T ss_pred             CccccCCEECCCEEEEEEEeCCCEEEEECCCcEEEcCCCCeEEEEcceeeccCC
Confidence            489999999999999999999999999999999999999999999999999874

>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}

Probab=99.27  E-value=8.5e-12  Score=87.84  Aligned_cols=48  Identities=21%  Similarity=0.431  Sum_probs=45.5

Q ss_pred             eecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccceecchhh
Q 028211           81 KPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLST  128 (212)
Q Consensus        81 k~I~gV~rVtIrk~d~~~fvI~~P~V~ks~gs~TYvVfGeak~edls~  128 (212)
                      ..|+||+||+|+|.+|++|+|++|.|+.++.+|||+|+|.+++++++.
T Consensus         2 ~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNTfvv~G~~e~K~l~e   49 (58)
T 3mcb_B            2 NNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE   49 (58)
T ss_dssp             CEECCCCEEEEEETTSEEEEEESCEEEEETTTTEEEEESCEEEEEGGG
T ss_pred             cccCCeeEEEEEecCCEEEEecCcceEEeeccceEEEecCCeeeEHHH
Confidence            578999999999999999999999999999999999999999998864

>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}

Probab=99.24  E-value=1.7e-11  Score=88.38  Aligned_cols=49  Identities=20%  Similarity=0.433  Sum_probs=45.0

Q ss_pred             CeecCCceEEEEEecCceEEEecCCeEEeeCCCceEEEeccceecchhh
Q 028211           80 MKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLST  128 (212)
Q Consensus        80 lk~I~gV~rVtIrk~d~~~fvI~~P~V~ks~gs~TYvVfGeak~edls~  128 (212)
                      +..|+||+||+|+|.+|++|+|++|.|+.++.+|||+|+|.+++++++.
T Consensus         1 v~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~e   49 (66)
T 3lkx_A            1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTE   49 (66)
T ss_dssp             CEECCCEEEEEEEETTSEEEEEESCEEEEECC-CEEEEESCEEEEEGGG
T ss_pred             CcccCCeeEEEEEecCCEEEEecCcceEEeeccCeeEecCCCEEeEHHH
Confidence            3578999999999999999999999999999999999999999998864

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=98.52  E-value=4.8e-08  Score=75.87  Aligned_cols=37  Identities=27%  Similarity=0.386  Sum_probs=34.9

Q ss_pred             ccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhc
Q 028211          175 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT  211 (212)
Q Consensus       175 eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~Lt  211 (212)
                      +++|++||++||||+++|++||.++||||..||+.|-
T Consensus        40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Ll   76 (104)
T 1wj7_A           40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLL   76 (104)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            4699999999999999999999999999999999883

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=98.19  E-value=1.4e-06  Score=62.19  Aligned_cols=40  Identities=28%  Similarity=0.260  Sum_probs=37.8

Q ss_pred             CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhhc
Q 028211          172 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT  211 (212)
Q Consensus       172 gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~Lt  211 (212)
                      .|+.++|+.+.++||++...+++||.++||||..||.-|.
T Consensus         7 ~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr   46 (64)
T 2cp9_A            7 GSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLH   46 (64)
T ss_dssp             CCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            5888999999999999999999999999999999998873

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=97.07  E-value=0.00051  Score=43.02  Aligned_cols=34  Identities=29%  Similarity=0.361  Sum_probs=30.0

Q ss_pred             cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211          176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       176 eDIeLVm~QagvSRekAikALke~nGDIV~AIM~L  210 (212)
                      +.|..+|+. |.||+.|++||+.++||+-.|+--|
T Consensus         6 ~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L   39 (40)
T 1z96_A            6 SKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL   39 (40)
T ss_dssp             HHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            468888887 9999999999999999998887654

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=95.16  E-value=0.01  Score=38.00  Aligned_cols=33  Identities=21%  Similarity=0.193  Sum_probs=27.1

Q ss_pred             cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211          176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME  209 (212)
Q Consensus       176 eDIeLVm~QagvSRekAikALke~nGDIV~AIM~  209 (212)
                      +.|..+|+ .|.+|+.|++||+.++||+=.|+=-
T Consensus         6 ~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~   38 (43)
T 2g3q_A            6 LAVEELSG-MGFTEEEAHNALEKCNWDLEAATNF   38 (43)
T ss_dssp             HHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHH
Confidence            45777766 7999999999999999999776533

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.78  E-value=0.029  Score=39.26  Aligned_cols=36  Identities=17%  Similarity=0.329  Sum_probs=29.7

Q ss_pred             CCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211          173 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME  209 (212)
Q Consensus       173 i~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~  209 (212)
                      ++++.|+.+|+ .|.+|..|++||+.++||+=.|+--
T Consensus         8 ~~~~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~   43 (63)
T 1wji_A            8 VDEKALKHITE-MGFSKEASRQALMDNGNNLEAALNV   43 (63)
T ss_dssp             SCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHH
Confidence            55677877775 7999999999999999998766543

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.16  E-value=0.041  Score=38.06  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=28.5

Q ss_pred             CCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHh
Q 028211          173 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIM  208 (212)
Q Consensus       173 i~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM  208 (212)
                      ++++-|..+|+ .|.+|+.|++||+.++|++=.|+-
T Consensus         8 ~~~~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e   42 (63)
T 2dak_A            8 PPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVD   42 (63)
T ss_dssp             CCHHHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHH
T ss_pred             CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence            45667777776 799999999999999999755553

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=93.82  E-value=0.06  Score=38.61  Aligned_cols=37  Identities=30%  Similarity=0.398  Sum_probs=30.5

Q ss_pred             CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211          172 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME  209 (212)
Q Consensus       172 gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~  209 (212)
                      .++++.|..+| ..|.+|..|++||+.++|++=.|+=-
T Consensus        27 ~~~~~~v~~L~-~MGF~~~~a~~AL~~t~~nve~Ave~   63 (73)
T 1wiv_A           27 DIDQSSVDTLL-SFGFAEDVARKALKASGGDIEKATDW   63 (73)
T ss_dssp             SSCHHHHHHHH-HHTCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CCCHHHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHH
Confidence            46677787777 47999999999999999999777643

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=93.78  E-value=0.056  Score=40.06  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=28.9

Q ss_pred             CCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028211          173 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI  207 (212)
Q Consensus       173 i~eeDIeLVm~QagvSRekAikALke~nGDIV~AI  207 (212)
                      ++++-|..+|+ .|.+|..|++||+.++||+=.|+
T Consensus        28 ~~ee~I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~   61 (83)
T 1veg_A           28 PSQESINQLVY-MGFDTVVAEAALRVFGGNVQLAA   61 (83)
T ss_dssp             CCHHHHHHHHH-HSCCHHHHHHHHHHTTTCHHHHH
T ss_pred             CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHH
Confidence            45678888875 69999999999999999986665

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=93.64  E-value=0.041  Score=39.07  Aligned_cols=31  Identities=19%  Similarity=0.334  Sum_probs=26.6

Q ss_pred             cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028211          176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI  207 (212)
Q Consensus       176 eDIeLVm~QagvSRekAikALke~nGDIV~AI  207 (212)
                      +.|+.|+ -.|.|+..|++|||.++|+|-.|.
T Consensus        21 e~V~~Lv-sMGFs~~qA~kALKat~~NvErAa   51 (63)
T 1wgn_A           21 QCVETVV-NMGYSYECVLRAMKKKGENIEQIL   51 (63)
T ss_dssp             HHHHHHH-HHHCCHHHHHHHHHHHCSCHHHHH
T ss_pred             HHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHH
Confidence            4677777 468999999999999999997764

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=93.52  E-value=0.094  Score=36.56  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=29.1

Q ss_pred             CCCccchHHHHhhhCCCHHHHHHHHHhc-CCcHHHHH
Q 028211          172 GVEPRDIDLVMTQAGVSRSKAVKALKTH-NGDIVSAI  207 (212)
Q Consensus       172 gi~eeDIeLVm~QagvSRekAikALke~-nGDIV~AI  207 (212)
                      .++++-|..+|+ .|.+|..|++||+.+ ||++=.|+
T Consensus         7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~   42 (64)
T 1whc_A            7 GAELTALESLIE-MGFPRGRAEKALALTGNQGIEAAM   42 (64)
T ss_dssp             CCCCCHHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHH
Confidence            466778887776 899999999999999 79986664

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=93.43  E-value=0.071  Score=38.51  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=29.7

Q ss_pred             CccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211          174 EPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       174 ~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~L  210 (212)
                      .++.|..+|+ .|.+|+.|++||+.++||+=.|+=-|
T Consensus        29 ~ee~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~L   64 (73)
T 1vg5_A           29 SEEQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEIL   64 (73)
T ss_dssp             CHHHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             cHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            3567888876 79999999999999999997776443

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=93.42  E-value=0.099  Score=36.49  Aligned_cols=34  Identities=26%  Similarity=0.492  Sum_probs=27.9

Q ss_pred             CCccchHHHHhhhCCCHHHHHHHHHhcCC-cHHHHH
Q 028211          173 VEPRDIDLVMTQAGVSRSKAVKALKTHNG-DIVSAI  207 (212)
Q Consensus       173 i~eeDIeLVm~QagvSRekAikALke~nG-DIV~AI  207 (212)
                      +++..|..+|+ .|.+|+.|++||+.++| ++=.|+
T Consensus        18 ~~e~~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~   52 (64)
T 2cpw_A           18 KHGSALDVLLS-MGFPRARAQKALASTGGRSVQTAC   52 (64)
T ss_dssp             SCCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHH
T ss_pred             CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHH
Confidence            44566877776 89999999999999998 886664

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.89  E-value=0.11  Score=38.28  Aligned_cols=35  Identities=20%  Similarity=0.326  Sum_probs=29.7

Q ss_pred             CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028211          172 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI  207 (212)
Q Consensus       172 gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AI  207 (212)
                      .++++-|..+|+ .|.+|..|++||+.++|++=.|+
T Consensus        27 ~~~e~~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~   61 (83)
T 2dai_A           27 RVDEAALRQLTE-MGFPENRATKALQLNHMSVPQAM   61 (83)
T ss_dssp             SCCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHH
Confidence            466778887776 89999999999999999986664

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=92.65  E-value=0.12  Score=34.57  Aligned_cols=34  Identities=29%  Similarity=0.488  Sum_probs=28.1

Q ss_pred             cchHHHHhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028211          176 RDIDLVMTQAGV-SRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       176 eDIeLVm~Qagv-SRekAikALke~nGDIV~AIM~L  210 (212)
                      ..|..+++ .|. +|..|++||+.++||+=.||--|
T Consensus        14 ~~l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L   48 (52)
T 2jy5_A           14 QQLEQLSA-MGFLNREANLQALIATGGDINAAIERL   48 (52)
T ss_dssp             HHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            45666664 689 99999999999999998887655

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=92.62  E-value=0.083  Score=34.93  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=25.9

Q ss_pred             cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211          176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME  209 (212)
Q Consensus       176 eDIeLVm~QagvSRekAikALke~nGDIV~AIM~  209 (212)
                      +.|..+| ..|.+|..|++||+.++||+=.|+=-
T Consensus        10 ~~i~~L~-~MGF~~~~a~~AL~~~~~n~e~A~e~   42 (49)
T 1ify_A           10 TMLTEIM-SMGYERERVVAALRASYNNPHRAVEY   42 (49)
T ss_dssp             HHHHHHH-HTTCCHHHHHHHHHTTTSCSHHHHHH
T ss_pred             HHHHHHH-HcCCCHHHHHHHHHHhCCCHHHHHHH
Confidence            3455554 46999999999999999998777643

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=92.50  E-value=0.12  Score=34.64  Aligned_cols=33  Identities=30%  Similarity=0.489  Sum_probs=26.8

Q ss_pred             chHHHHhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028211          177 DIDLVMTQAGV-SRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       177 DIeLVm~Qagv-SRekAikALke~nGDIV~AIM~L  210 (212)
                      .|..+++ .|. +|..|++||+.++||+=.||--|
T Consensus        14 ~l~~L~~-MGF~~~~~~~~AL~~t~gnve~Ave~L   47 (53)
T 2knz_A           14 QLEQLNS-MGFINREANLQALIATGGDINAAIERL   47 (53)
T ss_dssp             HHHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            4665554 688 99999999999999998887554

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.49  E-value=0.11  Score=33.71  Aligned_cols=34  Identities=26%  Similarity=0.467  Sum_probs=27.6

Q ss_pred             CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028211          172 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI  207 (212)
Q Consensus       172 gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AI  207 (212)
                      .++++.|..+|+ .|.+|+.|++||+.++ ++=.|+
T Consensus         7 ~~~~~~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~   40 (47)
T 2ekk_A            7 GVNQQQLQQLMD-MGFTREHAMEALLNTS-TMEQAT   40 (47)
T ss_dssp             SSCHHHHHHHHH-HHCCHHHHHHHHHHSC-SHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHcC-CHHHHH
Confidence            466778888876 8999999999999994 765554

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=91.95  E-value=0.24  Score=34.55  Aligned_cols=35  Identities=23%  Similarity=0.360  Sum_probs=28.5

Q ss_pred             CCCccchHHHHhhhCCCHHHHHHHHHhcCC-cHHHHH
Q 028211          172 GVEPRDIDLVMTQAGVSRSKAVKALKTHNG-DIVSAI  207 (212)
Q Consensus       172 gi~eeDIeLVm~QagvSRekAikALke~nG-DIV~AI  207 (212)
                      ..+++.|.-+++ .|.+|+.|++||+.++| ++=.|+
T Consensus         7 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~   42 (64)
T 2crn_A            7 GSSPSLLEPLLA-MGFPVHTALKALAATGRKTAEEAL   42 (64)
T ss_dssp             CCSCSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence            356678887777 89999999999999987 775554

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=91.93  E-value=0.17  Score=33.12  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=25.5

Q ss_pred             chHHHHhhhCCC-HHHHHHHHHhcCCcHHHHHhhh
Q 028211          177 DIDLVMTQAGVS-RSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       177 DIeLVm~QagvS-RekAikALke~nGDIV~AIM~L  210 (212)
                      -|.-++ ..|.+ |..+++||+.++||+=.||--|
T Consensus        10 ~i~~L~-~MGF~d~~~~~~AL~~~~gnv~~Ave~L   43 (46)
T 2bwb_A           10 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSL   43 (46)
T ss_dssp             HHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence            344444 46875 7788999999999999888665

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.71  E-value=0.16  Score=36.49  Aligned_cols=34  Identities=15%  Similarity=0.134  Sum_probs=27.3

Q ss_pred             CCccchHHHHhhhCCCHHHHHHHHHhcCC-cHHHHH
Q 028211          173 VEPRDIDLVMTQAGVSRSKAVKALKTHNG-DIVSAI  207 (212)
Q Consensus       173 i~eeDIeLVm~QagvSRekAikALke~nG-DIV~AI  207 (212)
                      ++++-|..+|+ .|.+|..|++||+.++| ++=.|+
T Consensus         8 ~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~   42 (74)
T 2dag_A            8 LDESVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAM   42 (74)
T ss_dssp             SCHHHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred             CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHH
Confidence            55566777776 89999999999999997 775554

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=91.27  E-value=0.15  Score=34.63  Aligned_cols=33  Identities=21%  Similarity=0.401  Sum_probs=25.3

Q ss_pred             chHHHHhhhCCCHHH-HHHHHHhcCCcHHHHHhhh
Q 028211          177 DIDLVMTQAGVSRSK-AVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       177 DIeLVm~QagvSRek-AikALke~nGDIV~AIM~L  210 (212)
                      -|..++ ..|.++.. +++||+.++|||=.||-.|
T Consensus        12 ~l~~L~-~MGF~d~~~n~~AL~~~~Gdv~~Ave~L   45 (54)
T 2dah_A           12 QLEQLR-SMGFLNREANLQALIATGGDVDAAVEKL   45 (54)
T ss_dssp             HHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence            455444 56997765 5999999999998887655

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=90.85  E-value=0.19  Score=34.42  Aligned_cols=30  Identities=20%  Similarity=0.274  Sum_probs=25.1

Q ss_pred             cchHHHHhhhCCCHHHHHHHHHhcCCcHHHH
Q 028211          176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSA  206 (212)
Q Consensus       176 eDIeLVm~QagvSRekAikALke~nGDIV~A  206 (212)
                      +-|+-.|+ .|.||+.|++||+-++|||--|
T Consensus        13 ~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~A   42 (52)
T 2ooa_A           13 AKIAKLMG-EGYAFEEVKRALEIAQNNVEVA   42 (52)
T ss_dssp             HHHHHHHH-TTCCHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHH
Confidence            46777776 4999999999999999998443

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=90.48  E-value=0.27  Score=33.90  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=25.9

Q ss_pred             chHHHHhhhCCC-HHHHHHHHHhcCCcHHHHHhhh
Q 028211          177 DIDLVMTQAGVS-RSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       177 DIeLVm~QagvS-RekAikALke~nGDIV~AIM~L  210 (212)
                      -|..++ ..|.+ |..+++||+.++|||=.||--|
T Consensus        20 qi~~L~-~MGF~d~~~~~~AL~~~~gnve~Ave~L   53 (58)
T 1wr1_B           20 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSL   53 (58)
T ss_dssp             HHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence            455554 46875 8888999999999998888655

>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3

Probab=89.83  E-value=0.34  Score=30.79  Aligned_cols=33  Identities=15%  Similarity=0.177  Sum_probs=29.0

Q ss_pred             chHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211          177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME  209 (212)
Q Consensus       177 DIeLVm~QagvSRekAikALke~nGDIV~AIM~  209 (212)
                      -|.-.++=|||++..|+..|..+++|+-.||-.
T Consensus         8 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~   40 (46)
T 1v92_A            8 ALREFVAVTGAEEDRARFFLESAGWDLQIALAS   40 (46)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHH
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHH
Confidence            467778889999999999999999999988743

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=89.32  E-value=0.3  Score=33.55  Aligned_cols=29  Identities=31%  Similarity=0.373  Sum_probs=24.8

Q ss_pred             chHHHHhhhCCCHHHHHHHHHhcCCcHHHH
Q 028211          177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSA  206 (212)
Q Consensus       177 DIeLVm~QagvSRekAikALke~nGDIV~A  206 (212)
                      -|+..|+ .|.||+.|++||.-++|||--|
T Consensus        12 ~I~~L~~-lGF~r~~ai~AL~~a~nnve~A   40 (53)
T 2d9s_A           12 EIERLMS-QGYSYQDIQKALVIAHNNIEMA   40 (53)
T ss_dssp             HHHHHHH-HTCCHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHH-cCCCHHHHHHHHHHhcCCHHHH
Confidence            3888886 4999999999999999999544

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=89.22  E-value=0.34  Score=37.34  Aligned_cols=37  Identities=19%  Similarity=0.370  Sum_probs=30.1

Q ss_pred             CCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211          173 VEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       173 i~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~L  210 (212)
                      +++.-|.-+|+ .|++|..|++||+.++||+-.|+=-|
T Consensus        77 ~~e~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L  113 (126)
T 2lbc_A           77 PPEEIVAIITS-MGFQRNQAIQALRATNNNLERALDWI  113 (126)
T ss_dssp             CCHHHHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             cCHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            45666777776 89999999999999999997776444

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=88.71  E-value=0.47  Score=34.94  Aligned_cols=33  Identities=30%  Similarity=0.365  Sum_probs=27.1

Q ss_pred             ccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHh
Q 028211          175 PRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIM  208 (212)
Q Consensus       175 eeDIeLVm~QagvSRekAikALke~nGDIV~AIM  208 (212)
                      ++-|..+++ .|.+|..|++||+.++|++=.|+=
T Consensus        22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~e   54 (85)
T 2dkl_A           22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMS   54 (85)
T ss_dssp             HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence            455666665 799999999999999999977763

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=87.16  E-value=0.63  Score=33.62  Aligned_cols=34  Identities=29%  Similarity=0.484  Sum_probs=26.8

Q ss_pred             cchHHHHhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028211          176 RDIDLVMTQAGV-SRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       176 eDIeLVm~Qagv-SRekAikALke~nGDIV~AIM~L  210 (212)
                      +-|..++ ..|. .|..+++||+.++|||=.||--|
T Consensus        31 ~qi~qL~-eMGF~dr~~~~~AL~~t~Gnve~Ave~L   65 (74)
T 1vej_A           31 QELEELK-ALGFANRDANLQALVATDGDIHAAIEML   65 (74)
T ss_dssp             HHHHHHH-HHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence            4566655 4688 58999999999999998887555

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=86.76  E-value=0.68  Score=33.89  Aligned_cols=35  Identities=14%  Similarity=0.168  Sum_probs=28.5

Q ss_pred             CCCccchHHHHhhhCCCHHHHHHHHHhcC-CcHHHHH
Q 028211          172 GVEPRDIDLVMTQAGVSRSKAVKALKTHN-GDIVSAI  207 (212)
Q Consensus       172 gi~eeDIeLVm~QagvSRekAikALke~n-GDIV~AI  207 (212)
                      .++++-|..+|+ .|.+|..|++||+.++ |++=.|+
T Consensus        27 ~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~   62 (84)
T 1vek_A           27 VANEEIVAQLVS-MGFSQLHCQKAAINTSNAGVEEAM   62 (84)
T ss_dssp             CCCHHHHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHH
T ss_pred             CCCHHHHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHH
Confidence            456778888776 8999999999999995 6886664

>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.44  E-value=0.86  Score=31.34  Aligned_cols=33  Identities=24%  Similarity=0.222  Sum_probs=29.9

Q ss_pred             chHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211          177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME  209 (212)
Q Consensus       177 DIeLVm~QagvSRekAikALke~nGDIV~AIM~  209 (212)
                      -|.-.|.=|||++..|+..|..+++||-.||-.
T Consensus        18 ~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~   50 (62)
T 2dal_A           18 LIQQFTTITGASESVGKHMLEACNNNLEMAVTM   50 (62)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            578888999999999999999999999998854

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=85.09  E-value=0.68  Score=32.96  Aligned_cols=33  Identities=24%  Similarity=0.439  Sum_probs=23.8

Q ss_pred             chHHHHhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028211          177 DIDLVMTQAGV-SRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       177 DIeLVm~Qagv-SRekAikALke~nGDIV~AIM~L  210 (212)
                      -|..++ ..|. .|...++||+.++|||-.||=-|
T Consensus        22 ql~qL~-~MGF~d~~an~~AL~at~Gnve~Ave~L   55 (67)
T 2dna_A           22 EMECLQ-AMGFVNYNANLQALIATDGDTNAAIYKL   55 (67)
T ss_dssp             HHHHHH-HHTCCCHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence            344444 3575 45566999999999998887655

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=84.38  E-value=0.73  Score=35.75  Aligned_cols=24  Identities=25%  Similarity=0.255  Sum_probs=21.8

Q ss_pred             hCCCHHHHHHHHHhcCCcHHHHHh
Q 028211          185 AGVSRSKAVKALKTHNGDIVSAIM  208 (212)
Q Consensus       185 agvSRekAikALke~nGDIV~AIM  208 (212)
                      .|.++..|++||+.||||+=.|+=
T Consensus        86 MGF~~~~a~~AL~~~~nd~erAle  109 (118)
T 4ae4_A           86 MGFELKDIKEVLLLHNNDQDNALE  109 (118)
T ss_dssp             TTCCHHHHHHHHHHTTTCHHHHHH
T ss_pred             cCCCHHHHHHHHHHcCCCHHHHHH
Confidence            599999999999999999988863

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=84.02  E-value=0.83  Score=30.56  Aligned_cols=35  Identities=26%  Similarity=0.286  Sum_probs=30.1

Q ss_pred             cchHHHHhhh-CCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211          176 RDIDLVMTQA-GVSRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       176 eDIeLVm~Qa-gvSRekAikALke~nGDIV~AIM~L  210 (212)
                      +++.+.++=. +|++..++.+|+.+|||+=.||-.|
T Consensus         6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~L   41 (49)
T 1otr_A            6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLL   41 (49)
T ss_dssp             HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            5788888875 9999999999999999998887554

>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.56  E-value=1.4  Score=30.91  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=29.6

Q ss_pred             chHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211          177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME  209 (212)
Q Consensus       177 DIeLVm~QagvSRekAikALke~nGDIV~AIM~  209 (212)
                      -|.--|.-|||++..|+..|..+++|+-.||-.
T Consensus        20 ~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~   52 (66)
T 2dzl_A           20 MINQFVLAAGCAADQAKQLLQAAHWQFETALST   52 (66)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            477888999999999999999999999988754

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=83.38  E-value=1.3  Score=29.50  Aligned_cols=29  Identities=34%  Similarity=0.391  Sum_probs=24.5

Q ss_pred             chHHHHhhhCCCHHHHHHHHHhcCCcHHHH
Q 028211          177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSA  206 (212)
Q Consensus       177 DIeLVm~QagvSRekAikALke~nGDIV~A  206 (212)
                      -|...|++ |.||+.|++||--+++||-.|
T Consensus         7 ~I~~L~s~-Gf~~~~~~rAL~ia~Nnie~A   35 (46)
T 2oo9_A            7 EIENLMSQ-GYSYQDIQKALVIAQNNIEMA   35 (46)
T ss_dssp             HHHHHHHT-TBCHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHc-CCCHHHHHHHHHHhhccHHHH
Confidence            46666664 999999999999999999665

>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=83.07  E-value=0.81  Score=31.37  Aligned_cols=26  Identities=35%  Similarity=0.562  Sum_probs=23.4

Q ss_pred             hCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028211          185 AGV-SRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       185 agv-SRekAikALke~nGDIV~AIM~L  210 (212)
                      .|. .+..-++||+.+||+|=.||..|
T Consensus        19 MGF~D~~~N~~aL~~~~gnv~~aI~~L   45 (54)
T 2cp8_A           19 MGFCDRQLNLRLLKKHNYNILQVVTEL   45 (54)
T ss_dssp             HTCCCHHHHHHHHTTTTTCHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence            355 99999999999999999999887

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=80.47  E-value=1.5  Score=33.83  Aligned_cols=29  Identities=24%  Similarity=0.496  Sum_probs=23.6

Q ss_pred             HhhhCC-CHHHHHHHHHhcCCcHHHHHhhh
Q 028211          182 MTQAGV-SRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       182 m~Qagv-SRekAikALke~nGDIV~AIM~L  210 (212)
                      +.+.|. .|..+++||+.++|||=.||=.|
T Consensus        73 L~eMGF~d~~~ni~AL~~t~Gdve~AVe~L  102 (108)
T 2cwb_A           73 LRDMGIQDDELSLRALQATGGDIQAALELI  102 (108)
T ss_dssp             HHTTTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            345687 56899999999999998887655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	95.61
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	94.87
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	94.84
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	94.28
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	94.02
d1wj7a1	91	Ubiquitin-associated protein 2-like Ubap2l {Mouse	93.67
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	93.62
d1v92a_	46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	93.19
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	93.19
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	92.94
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	90.34
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	90.08
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	89.12
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	88.46
d2cosa1	41	Serine/threonine protein kinase LATS2 {Mouse (Mus	84.11

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.0066  Score=40.26  Aligned_cols=39  Identities=26%  Similarity=0.314  Sum_probs=36.0

Q ss_pred             CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211          172 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       172 gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~L  210 (212)
                      .|+.++|+-+=++||++--...+||.+++||+-.||--|
T Consensus         2 ~is~~~iK~LR~~Tgag~~dCKkAL~e~~gD~ekA~e~L   40 (54)
T d1efub3           2 EITASLVKELRERTGAGMMDCKKALTEANGDIELAIENM   40 (54)
T ss_dssp             CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            477889999999999999999999999999999998766

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.0068  Score=37.84  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=25.8

Q ss_pred             hHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211          178 IDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       178 IeLVm~QagvSRekAikALke~nGDIV~AIM~L  210 (212)
                      |.-+|+ .|.||+.|++||+.++|++-.||=-|
T Consensus         8 i~~L~~-MGF~~~~a~~AL~~~~~N~e~A~~~L   39 (41)
T d1oqya1           8 LTEIMS-MGYERERVVAALRASYNNPHRAVEYL   39 (41)
T ss_dssp             HHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTT
T ss_pred             HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            444444 79999999999999999998887544

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.84  E-value=0.013  Score=40.61  Aligned_cols=36  Identities=31%  Similarity=0.460  Sum_probs=30.5

Q ss_pred             CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHh
Q 028211          172 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIM  208 (212)
Q Consensus       172 gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM  208 (212)
                      .++++-|..+|+ .|.||..|++||+.++|++=.||=
T Consensus        27 ~~d~~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~Av~   62 (73)
T d1wiva_          27 DIDQSSVDTLLS-FGFAEDVARKALKASGGDIEKATD   62 (73)
T ss_dssp             SSCHHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHH
T ss_pred             CCCHHHHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHH
Confidence            466777888885 899999999999999999877753

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=94.28  E-value=0.017  Score=36.56  Aligned_cols=24  Identities=29%  Similarity=0.321  Sum_probs=21.4

Q ss_pred             hCCCHHHHHHHHHhcCCcHHHHHh
Q 028211          185 AGVSRSKAVKALKTHNGDIVSAIM  208 (212)
Q Consensus       185 agvSRekAikALke~nGDIV~AIM  208 (212)
                      .|.++++|++||+++|+|+-.|.=
T Consensus        14 MGF~e~~A~~AL~k~~wnleaAtN   37 (43)
T d2g3qa1          14 MGFTEEEAHNALEKCNWDLEAATN   37 (43)
T ss_dssp             TTSCHHHHHHHHHHHTSCHHHHHH
T ss_pred             cCCCHHHHHHHHHHcCCCHHHHHH
Confidence            599999999999999999977753

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.024  Score=37.95  Aligned_cols=38  Identities=18%  Similarity=0.383  Sum_probs=30.6

Q ss_pred             CCCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211          171 TGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME  209 (212)
Q Consensus       171 ~gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AIM~  209 (212)
                      ++++++-|..+|+ .|.+|..|++||+.++|++-.|+--
T Consensus         6 ~~~d~~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~~w   43 (63)
T d1wjia_           6 SGVDEKALKHITE-MGFSKEASRQALMDNGNNLEAALNV   43 (63)
T ss_dssp             CSSCHHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CccCHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHH
Confidence            4566777776665 5999999999999999999777643

>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 2-like Ubap2l
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.67  E-value=0.034  Score=40.27  Aligned_cols=35  Identities=29%  Similarity=0.425  Sum_probs=30.8

Q ss_pred             cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211          176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       176 eDIeLVm~QagvSRekAikALke~nGDIV~AIM~L  210 (212)
                      +=|+.||+=||||..+|+=||-.+|||+-.||=-|
T Consensus        34 ~kVkql~e~T~rsede~~~ALhDcn~D~~~AIn~l   68 (91)
T d1wj7a1          34 EKVKQLIDITGKNQDECVIALHDCNGDVNRAINVL   68 (91)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhcCCccHHHHHHHH
Confidence            56899999999999999999999999997776433

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.62  E-value=0.041  Score=36.98  Aligned_cols=36  Identities=28%  Similarity=0.461  Sum_probs=29.2

Q ss_pred             CCCCccchHHHHhhhCCCHHHHHHHHHhcCC-cHHHHH
Q 028211          171 TGVEPRDIDLVMTQAGVSRSKAVKALKTHNG-DIVSAI  207 (212)
Q Consensus       171 ~gi~eeDIeLVm~QagvSRekAikALke~nG-DIV~AI  207 (212)
                      ++++++-|.-++ ..|+||+.|++||+.++| ++=.|+
T Consensus         6 s~~d~~~l~~L~-~MGF~~~~a~~AL~~t~n~~~e~A~   42 (64)
T d1whca_           6 SGAELTALESLI-EMGFPRGRAEKALALTGNQGIEAAM   42 (64)
T ss_dssp             CCCCCCHHHHHH-TTTCCHHHHHHHHHHHTSCCHHHHH
T ss_pred             CccCHHHHHHHH-HcCCCHHHHHHHHHHhCCCCHHHHH
Confidence            457777787777 489999999999999977 776564

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.19  E-value=0.041  Score=34.77  Aligned_cols=33  Identities=15%  Similarity=0.177  Sum_probs=29.4

Q ss_pred             chHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211          177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIME  209 (212)
Q Consensus       177 DIeLVm~QagvSRekAikALke~nGDIV~AIM~  209 (212)
                      =|.-.|+=||||++.|+.-|..+|+||=.||-.
T Consensus         8 lI~qF~~iTg~~~~~A~~~Le~~~w~Le~Ai~~   40 (46)
T d1v92a_           8 ALREFVAVTGAEEDRARFFLESAGWDLQIALAS   40 (46)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHH
Confidence            466778899999999999999999999999854

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=93.19  E-value=0.057  Score=35.78  Aligned_cols=35  Identities=29%  Similarity=0.206  Sum_probs=30.8

Q ss_pred             cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211          176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       176 eDIeLVm~QagvSRekAikALke~nGDIV~AIM~L  210 (212)
                      +-|+-.=++||++--...+||.++||||-.||--|
T Consensus         6 ~lvk~LRe~Tga~~~dcKkAL~e~~gD~ekA~e~L   40 (56)
T d1xb2b1           6 ELLMKLRRKTGYSFINCKKALETCGGDLKQAESWL   40 (56)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            45666778999999999999999999999998765

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.94  E-value=0.056  Score=35.31  Aligned_cols=34  Identities=21%  Similarity=0.135  Sum_probs=29.3

Q ss_pred             chHHHHhhhCCCHHHHHHHHHhcCCcHHHHHhhh
Q 028211          177 DIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMEL  210 (212)
Q Consensus       177 DIeLVm~QagvSRekAikALke~nGDIV~AIM~L  210 (212)
                      .|+-.=++||++--...+||.++||||-.||=-|
T Consensus         5 lvK~LR~~Tga~~~dcKkAL~e~~gD~ekA~e~L   38 (52)
T d1aipc1           5 LIKKLREATGAGMMDVKRALEDAGWDEEKAVQLL   38 (52)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            4566668999999999999999999999997544

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.34  E-value=0.19  Score=32.34  Aligned_cols=33  Identities=27%  Similarity=0.524  Sum_probs=26.1

Q ss_pred             CccchHHHHhhhCCCHHHHHHHHHhcCC-cHHHHH
Q 028211          174 EPRDIDLVMTQAGVSRSKAVKALKTHNG-DIVSAI  207 (212)
Q Consensus       174 ~eeDIeLVm~QagvSRekAikALke~nG-DIV~AI  207 (212)
                      ++..|..+++ .|.|++.|++||+.++| +|=.|+
T Consensus        12 ~~~~l~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~   45 (51)
T d2cpwa1          12 HGSALDVLLS-MGFPRARAQKALASTGGRSVQTAC   45 (51)
T ss_dssp             CCCHHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHH
T ss_pred             CHHHHHHHHH-cCCCHHHHHHHHHHHCCCCHHHHH
Confidence            4556777775 89999999999999877 775554

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.08  E-value=0.12  Score=35.43  Aligned_cols=35  Identities=20%  Similarity=0.367  Sum_probs=28.8

Q ss_pred             CCCccchHHHHhhhCCCHHHHHHHHHhcCCcHHHHH
Q 028211          172 GVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAI  207 (212)
Q Consensus       172 gi~eeDIeLVm~QagvSRekAikALke~nGDIV~AI  207 (212)
                      .++++.|..+| ..|.+|+.|++||+.++|+|=.||
T Consensus        27 ~~~ee~i~~L~-~MGF~~~~a~~AL~~~~~n~e~A~   61 (73)
T d1vg5a_          27 AASEEQIQKLV-AMGFDRTQVEVALAAADDDLTVAV   61 (73)
T ss_dssp             CCCHHHHHHHH-TTTCCHHHHHHHHHHHTSCHHHHH
T ss_pred             CcCHHHHHHHH-HhCCCHHHHHHHHHHhCCCHHHHH
Confidence            35667787765 479999999999999999986665

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.12  E-value=0.14  Score=34.17  Aligned_cols=32  Identities=19%  Similarity=0.292  Sum_probs=24.9

Q ss_pred             cchHHHHhhhCCCHHHHHHHHHhcCCcHHHHHh
Q 028211          176 RDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIM  208 (212)
Q Consensus       176 eDIeLVm~QagvSRekAikALke~nGDIV~AIM  208 (212)
                      +-|..+| ..|.+|+.|++||+.++|++=.|+-
T Consensus        21 ~~v~~L~-~MGF~~~~a~~AL~~~~~n~e~A~~   52 (63)
T d1wgna_          21 QCVETVV-NMGYSYECVLRAMKKKGENIEQILD   52 (63)
T ss_dssp             HHHHHHH-HHHCCHHHHHHHHHHHCSCHHHHHH
T ss_pred             HHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHH
Confidence            3455444 4699999999999999999766653

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.46  E-value=0.31  Score=31.12  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=23.8

Q ss_pred             ccchHHHHhhhCCCHHHHHHHHHhcC-CcHHHHH
Q 028211          175 PRDIDLVMTQAGVSRSKAVKALKTHN-GDIVSAI  207 (212)
Q Consensus       175 eeDIeLVm~QagvSRekAikALke~n-GDIV~AI  207 (212)
                      ++-|..++ ..|.||..|+|||+.++ +++=.|+
T Consensus         3 p~~v~~L~-~MGF~~~~a~~Al~~t~n~~ve~A~   35 (51)
T d2crna1           3 PSLLEPLL-AMGFPVHTALKALAATGRKTAEEAL   35 (51)
T ss_dssp             CSSHHHHH-HTSCCHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHH-HcCCCHHHHHHHHHHHCCCCHHHHH
Confidence            34455554 58999999999999985 4876664

>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Serine/threonine protein kinase LATS2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.11  E-value=0.3  Score=29.98  Aligned_cols=28  Identities=29%  Similarity=0.411  Sum_probs=23.6

Q ss_pred             HhhhCCCHHHHHHHHHhcCCcHHHHHhh
Q 028211          182 MTQAGVSRSKAVKALKTHNGDIVSAIME  209 (212)
Q Consensus       182 m~QagvSRekAikALke~nGDIV~AIM~  209 (212)
                      +.++||..+-+++||+.+|+--++|-++
T Consensus         9 l~~aG~D~~m~iral~qt~~rsieaaie   36 (41)
T d2cosa1           9 LVNAGCDQEMAGRALKQTGSRSIEAALE   36 (41)
T ss_dssp             HHHHHCCHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHhCcccHHHHHH
Confidence            5689999999999999998877766554