Citrus Sinensis ID: 028281

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MKCGLILLQRWLYNIIETFRRRQTMTHLTVNADEEDTEMGQRKCIESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAISMANEV
Secondary Structure (PSIPRED)
ccccEEEEEEcccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHccccccHHHHHcccccccHHcccccEEEEccccccEEEEEEEccEEEEEccccEEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEHHHcHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHccHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHEHEEccccccEEEEEEEEccEEEEEccccEEEEcccccEEEEEEEEEEEHHHHccccccccccccccEEEEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MKCGLILLQRWLYNIIETFRRrqtmthltvnadeedtemgqrkcieskgsnfacrirdhvkmgpkfsETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQCYlsttrgpiagllfisnkkiafcsersisyssstgelirtpykvlipiqkiksinesenvnkpeqkYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAISMANEV
Flexible Loop (DISEMBL)
MKCGLILLQRWLYNIIETfrrrqtmthltvnadeedtemgqrkcieskgsnfacrIRDHVKMGPKFSETVKSKLSLGAkiiqkggreNIFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSisyssstgelirtpyKVLIPIQKiksinesenvnkpeqkyVEIVTVDDFEFWFMGFLRYEKAYRNLQKAISMANEV
Low Complexity Region (SEG)
MKCGLILLQRWLYNIIETFRRRQTMTHLTVNADEEDTEMGQRKCIESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAISMANEV
Disordered region (IsUnstruct)
**CGLILLQRWLYNIIETFRRRQTMTHLTV*******************SNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSIN********EQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQ*********
Disordered Region (DISOPRED)
**CGLILLQRWLYNI***********************************NFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQ*******************EIVTVDDFEFWFMGFLRYEKAYRNLQK*I******
Disordered Region (DISEMBL)
MKCGLILLQRWLYNIIETFRRRQTMTHLTVNADEEDTEMGQRKCIESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQK********
Disordered Region (DISPRO)
*KCGLILLQRWLYNIIETFR***************DTEMGQRKCIESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAISMA***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKCGLILLQRWLYNIIETFRRRQTMTHLTVNADEEDTEMGQRKCIESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAISMANEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q9FMW4	219	Putative GEM-like protein	yes	no	0.815	0.785	0.569	2e-52
Q9FTA0	222	GEM-like protein 4 OS=Ara	no	no	0.886	0.842	0.539	2e-52
Q9FMW6	218	GEM-like protein 6 OS=Ara	no	no	0.805	0.779	0.570	9e-51
Q9FMW5	210	GEM-like protein 7 OS=Ara	no	no	0.753	0.757	0.578	8e-50
Q9LYV6	272	GEM-like protein 5 OS=Ara	no	no	0.848	0.658	0.383	4e-35
Q9M122	233	GEM-like protein 2 OS=Ara	no	no	0.710	0.643	0.450	3e-34
Q9SE96	259	GEM-like protein 1 OS=Ara	no	no	0.744	0.606	0.367	1e-31
Q8S8F8	299	GLABRA2 expression modula	no	no	0.744	0.525	0.360	2e-31
Q9M063	239	Putative GEM-like protein	no	no	0.587	0.518	0.366	2e-25

>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/172 (56%), Positives = 129/172 (75%)

Query: 37  TEMGQRKCIESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGL 96
           T  G+    + K  +F   +RD  K+GPK +ETVK KLSLGA+I+Q GG E I+K++F +
Sbjct: 45  TGKGKSMLRKKKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKV 104

Query: 97  TEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPI 156
           ++ E+  KA QCYLSTT GPIAGLLFIS+KKIAFCSERSI  +S  GEL R  YKV IP+
Sbjct: 105 SDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPL 164

Query: 157 QKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAISMA 208
            KI  +N+S+N  KP QKY+E+VTVD F+FWFMGFL Y+KA+  L++A+S++
Sbjct: 165 CKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQALSLS 216

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/189 (53%), Positives = 132/189 (69%), Gaps = 2/189 (1%)

Query: 24  TMTHLTVNADEEDTEMGQRKCI--ESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKII 81
           +     V A  + +E    K I    K   F   +RD  K+ PK +ETVK KLSLGA+I+
Sbjct: 29  SFNKFRVPASSKKSEQSNVKSILKRKKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARIL 88

Query: 82  QKGGRENIFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSS 141
           Q GG E IFK++F ++EGE+  K  QCYLSTT GPIAGLLFIS+KK+AFCSERSI   S 
Sbjct: 89  QVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSP 148

Query: 142 TGELIRTPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNL 201
            G++IR  YKV IP+ KI  +N+S+N  KP QKY+E+VTVD F+FWFMGFL Y+KA+  L
Sbjct: 149 QGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCL 208

Query: 202 QKAISMANE 210
           +KA+S++ E
Sbjct: 209 EKALSLSFE 217

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2

 Score =  199 bits (507), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 125/170 (73%)

Query: 37  TEMGQRKCIESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGL 96
           T  G+    + K  +F    RD  K+GPK +ETVK KLSLGAKI+Q GG E I+K++F +
Sbjct: 45  TGKGKSMLRKKKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKV 104

Query: 97  TEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPI 156
            + E+  KA QCYLSTT GPIAGLLFIS+KKIAFCSERSI  +S  G L R  YKV IP+
Sbjct: 105 CDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPL 164

Query: 157 QKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAIS 206
            KI  +N+S+N  KP QKY+EIVT+D+F+FWFMGF+ Y+KA+  L+KA++
Sbjct: 165 CKINGVNQSQNTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEKALN 214

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1

 Score =  196 bits (499), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 92/159 (57%), Positives = 121/159 (76%)

Query: 48  KGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQ 107
           K  +F    RD  K+GPK +ETVK KLSLGAKI+Q GG E I+K++F + + E+  KA Q
Sbjct: 48  KTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQ 107

Query: 108 CYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESEN 167
           CYLSTT G IAGLLFIS+KKIAFCSERSI  +S  G+L R  YKV IP+ KI  +N+S+N
Sbjct: 108 CYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQN 167

Query: 168 VNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAIS 206
             KP Q+Y+E+VTVD+++FWFMGF+ Y+KA+  L+KA++
Sbjct: 168 TKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKALN 206

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1

 Score =  147 bits (372), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 108/180 (60%), Gaps = 1/180 (0%)

Query: 27  HLTVNADEEDTEMGQRKCIESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGR 86
           H T N   E   +G       K    A  +  ++K GP  SET   K++L AK I KGG 
Sbjct: 83  HPTTNNPLEPV-IGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGF 141

Query: 87  ENIFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELI 146
           E++F+QIFG    E   K   CYLSTT GP+AG +++SN ++AFCS+R + +++ +G+  
Sbjct: 142 ESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQES 201

Query: 147 RTPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAIS 206
            + Y+V++P+  + ++N       P +KY+++ TVD  +FWFMGF+ YEKA  +L  ++S
Sbjct: 202 WSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVS 261

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1

 Score =  144 bits (364), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 103/151 (68%), Gaps = 1/151 (0%)

Query: 56  IRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQCYLSTTRG 115
           ++DH+K  P  S+   ++LS G K+I +GG E +F++ FG+   E+ L +  CY+STT G
Sbjct: 74  LKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSG 133

Query: 116 PIAGLLFISNKKIAFCSERSISY-SSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQK 174
           P+ G+++ISN++IAFCS+ +I   SS+ G  +   YKV++  +KI SI+ S NV KP ++
Sbjct: 134 PVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSER 193

Query: 175 YVEIVTVDDFEFWFMGFLRYEKAYRNLQKAI 205
           YV +VT D FEFWFMGF+ Y  A+  L KA+
Sbjct: 194 YVHMVTRDGFEFWFMGFVSYIDAFNCLNKAL 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 100/158 (63%), Gaps = 1/158 (0%)

Query: 48  KGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQ 107
           K  + A     H+K GP  ++   S+++ G KI+ +GG E +FKQ F     E+ LK   
Sbjct: 98  KAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYA 157

Query: 108 CYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESEN 167
           CYLST+ GP+ G++++S  K+AF S+  +SY     + + + YKV++P  ++K++N S +
Sbjct: 158 CYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKEGE-QTLWSYYKVVLPANQLKAVNPSTS 216

Query: 168 VNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAI 205
                 KY++++++D+ EFWFMGF+ YE A ++LQ+A+
Sbjct: 217 RVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAV 254

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 101/158 (63%), Gaps = 1/158 (0%)

Query: 48  KGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQ 107
           K  + A     H++  P F++    +++   K+  +GG E IF+Q F     E+ L +  
Sbjct: 135 KTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFA 194

Query: 108 CYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESEN 167
           CYLST+ GP+ G+L+IS+ K+A+CS+  +SY +   +   + YKV+IP+ ++K++N S +
Sbjct: 195 CYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKNGD-QTEWSYYKVVIPLHQLKAVNPSAS 253

Query: 168 VNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAI 205
           +  P +KY+++++VD+ EFWFMGFL Y+ A  +LQ ++
Sbjct: 254 IVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSL 291

Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. Could be part of a complex that negatively modulates GLABRA2 and CAPRICE expression via the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 83/139 (59%), Gaps = 15/139 (10%)

Query: 73  KLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCS 132
           +++   K++ +GG E IF+Q F     E+   +  CYLST+ GP+ G+L++S  K+A+CS
Sbjct: 113 RIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCS 172

Query: 133 ERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFL 192
           + S+               V+IP+ ++KS+N S +   P +KY+++++VDD EFWFMGFL
Sbjct: 173 DTSL---------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMGFL 217

Query: 193 RYEKAYRNLQKAISMANEV 211
            YE A  +LQ  +     V
Sbjct: 218 NYEGAVTSLQDTLQAGASV 236

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
225462636	228	PREDICTED: GEM-like protein 4-like isofo	0.853	0.789	0.672	1e-67
388503950	183	unknown [Lotus japonicus]	0.848	0.978	0.674	3e-66
449439517	222	PREDICTED: GEM-like protein 4-like isofo	0.796	0.756	0.680	1e-64
357499751	202	GEM-like protein [Medicago truncatula] g	0.829	0.866	0.68	3e-64
356531064	213	PREDICTED: putative GEM-like protein 8-l	0.796	0.788	0.674	4e-62
224076878	149	predicted protein [Populus trichocarpa]	0.706	1.0	0.718	2e-59
359484167	294	PREDICTED: GEM-like protein 4-like [Viti	0.919	0.659	0.548	8e-59
359484173	207	PREDICTED: GEM-like protein 4-like [Viti	0.853	0.869	0.585	4e-58
359484157	324	PREDICTED: GEM-like protein 7-like [Viti	0.763	0.496	0.664	5e-58
356560017	155	PREDICTED: putative GEM-like protein 8-l	0.715	0.974	0.708	2e-57

>gi|225462636|ref|XP_002266003.1| PREDICTED: GEM-like protein 4-like isoform 1 [Vitis vinifera]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/180 (67%), Positives = 149/180 (82%)

Query: 30  VNADEEDTEMGQRKCIESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENI 89
           +     ++ +G+   +  K  +FA R+R+HV++GPK SETVK KLSLGA+IIQ+GGRE I
Sbjct: 49  IKTKNRNSVVGRMNKLGKKTHSFAFRVREHVRLGPKLSETVKGKLSLGARIIQEGGREKI 108

Query: 90  FKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTP 149
           FK IF + EGEE LKASQCYLSTT GPIAGLLFIS +K+AFCSERSIS +S +GE++R+P
Sbjct: 109 FKHIFSVNEGEELLKASQCYLSTTAGPIAGLLFISTEKVAFCSERSISLTSPSGEIVRSP 168

Query: 150 YKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAISMAN 209
           YKVLIP++KIK  N+SENVNKP QKY+EIVT D FEFWFMGFLRYEKA++NL+KAISM N
Sbjct: 169 YKVLIPVRKIKRANQSENVNKPAQKYIEIVTTDGFEFWFMGFLRYEKAFKNLEKAISMYN 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503950|gb|AFK40041.1| unknown [Lotus japonicus]

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 122/181 (67%), Positives = 149/181 (82%), Gaps = 2/181 (1%)

Query: 31  NADEEDT--EMGQRKCIESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGREN 88
           N+D+E+T  +M  +K    K S+FACRI +HVK+GPK SETVK KLSLGA+IIQ+GGR N
Sbjct: 3   NSDKEETTKKMEHKKATSKKRSDFACRIHEHVKLGPKLSETVKGKLSLGARIIQEGGRGN 62

Query: 89  IFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRT 148
           IFK IFG+ EGE+ LKASQCYL TT GPIAG LFIS +K+AFCSER I+ +S+ GEL+R 
Sbjct: 63  IFKHIFGMQEGEKLLKASQCYLYTTSGPIAGDLFISTEKVAFCSERPITCTSAAGELVRV 122

Query: 149 PYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAISMA 208
           PYKVLIP++KIK +NE ++VNK EQKY+EIVT D  EFWFMGFLRYEKA+ NLQKAIS +
Sbjct: 123 PYKVLIPVEKIKEVNEGQDVNKTEQKYIEIVTGDGSEFWFMGFLRYEKAFMNLQKAISKS 182

Query: 209 N 209
           +
Sbjct: 183 S 183

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439517|ref|XP_004137532.1| PREDICTED: GEM-like protein 4-like isoform 1 [Cucumis sativus] gi|449516848|ref|XP_004165458.1| PREDICTED: GEM-like protein 4-like isoform 1 [Cucumis sativus]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/169 (68%), Positives = 145/169 (85%), Gaps = 1/169 (0%)

Query: 41  QRKCIESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGE 100
           +++ I  +G  F  R+ +HVK+GPKF  T K KL LGAKIIQ+GGR+NIFKQ+FG+ EGE
Sbjct: 45  KKQLIRKRG-GFVFRVYEHVKLGPKFLVTAKGKLRLGAKIIQQGGRKNIFKQVFGIVEGE 103

Query: 101 EFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIK 160
           + LKASQCYLST+ GPIAGLLFIS +K+AFCSE+SI++SS TGEL++TPYKVLIP++KI+
Sbjct: 104 QLLKASQCYLSTSAGPIAGLLFISTEKVAFCSEQSITFSSPTGELLKTPYKVLIPLKKIR 163

Query: 161 SINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAISMAN 209
             N+SENVN P +KY+E+VT D+F+FWFMGFLRYEKA+ NLQKAISMAN
Sbjct: 164 KANQSENVNDPAKKYIEVVTDDNFDFWFMGFLRYEKAFTNLQKAISMAN 212

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357499751|ref|XP_003620164.1| GEM-like protein [Medicago truncatula] gi|355495179|gb|AES76382.1| GEM-like protein [Medicago truncatula]

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 119/175 (68%), Positives = 142/175 (81%)

Query: 36  DTEMGQRKCIESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFG 95
           D E  +R C   + S+FA  I +HVK+GPKFSET+K KLSLGAKIIQ+GGR NIFK IFG
Sbjct: 27  DKENSKRDCTRKERSSFAYSIHEHVKLGPKFSETLKGKLSLGAKIIQEGGRGNIFKHIFG 86

Query: 96  LTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIP 155
           + E E+ LKASQCYL TT GPIAG+LFIS  K+AFCSER  S+SS+ G+L++ PYKVLIP
Sbjct: 87  MQEEEKLLKASQCYLYTTAGPIAGILFISTVKVAFCSERPTSFSSADGDLVKAPYKVLIP 146

Query: 156 IQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAISMANE 210
           ++KIK +NES NVNK EQKY+E+VT DD EFWFMGFLRYEKA +NL  AISMAN+
Sbjct: 147 MEKIKEVNESMNVNKLEQKYIEVVTKDDSEFWFMGFLRYEKAIKNLNNAISMANK 201

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531064|ref|XP_003534098.1| PREDICTED: putative GEM-like protein 8-like [Glycine max]

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 116/172 (67%), Positives = 141/172 (81%), Gaps = 4/172 (2%)

Query: 43  KCIESKGS----NFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTE 98
           K I +KG+    +F  RI DHVKMGP  SE +K KLSLGA+IIQ+GGR +IFK +FG+ E
Sbjct: 41  KEIATKGTGKSRSFTHRIHDHVKMGPNLSEILKGKLSLGARIIQEGGRGSIFKSVFGMQE 100

Query: 99  GEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQK 158
            E+ LKASQCYL TT GPIAG+LF+S +K+AF SER I++SS+TGEL+R PYKVLIPI +
Sbjct: 101 KEQLLKASQCYLYTTAGPIAGILFVSTEKVAFYSERPITFSSATGELVRAPYKVLIPIGR 160

Query: 159 IKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAISMANE 210
           IK +NES+NVNK EQKY+EIVT DD EFWF+GFLRYEKA +NL KAISMAN+
Sbjct: 161 IKEVNESQNVNKAEQKYIEIVTEDDSEFWFVGFLRYEKALKNLNKAISMANQ 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076878|ref|XP_002305031.1| predicted protein [Populus trichocarpa] gi|222847995|gb|EEE85542.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/149 (71%), Positives = 130/149 (87%)

Query: 60  VKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQCYLSTTRGPIAG 119
           VK+G  FSETVK KL LGAKIIQ+GGRENIFKQ+FG+ EGEE LKASQCYLSTT GP+ G
Sbjct: 1   VKLGATFSETVKGKLRLGAKIIQEGGRENIFKQVFGVREGEELLKASQCYLSTTAGPLPG 60

Query: 120 LLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQKYVEIV 179
           LLFIS +K+AFCSERSI++ S  G+ +R PYKV+IP++KI+  N SEN++KP+QKY+EIV
Sbjct: 61  LLFISTEKVAFCSERSITFPSPNGQFVRKPYKVVIPVRKIERANRSENMDKPQQKYIEIV 120

Query: 180 TVDDFEFWFMGFLRYEKAYRNLQKAISMA 208
           T D+FEFWFMGFLRYEKA++NL KAIS+A
Sbjct: 121 TQDNFEFWFMGFLRYEKAFKNLHKAISLA 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484167|ref|XP_003633072.1| PREDICTED: GEM-like protein 4-like [Vitis vinifera]

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 113/206 (54%), Positives = 149/206 (72%), Gaps = 12/206 (5%)

Query: 18  TFRRRQTMTH----LTVNADEEDTEMGQRKC--------IESKGSNFACRIRDHVKMGPK 65
           T+++   + H     ++N +E+D E  Q K          E K  NF   IR+HV++GPK
Sbjct: 8   TWKKADNIVHGIREHSLNPNEKDKESNQSKVDRKKKMNRHEKKAYNFVQGIREHVRLGPK 67

Query: 66  FSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISN 125
            SETVK KLSLGA+I+Q GG + +FKQIFG+ EGE+ LKASQCYLSTT GP+AGLLFIS 
Sbjct: 68  ISETVKGKLSLGARILQLGGVKRVFKQIFGIGEGEKLLKASQCYLSTTAGPLAGLLFIST 127

Query: 126 KKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFE 185
           +++AFCSERSI +SS  GEL+R  YKV IP++K+K ++ SENV  P QKY+EIVTVD+F+
Sbjct: 128 QRVAFCSERSIKFSSPNGELVRFHYKVSIPLRKVKRVDPSENVKNPSQKYMEIVTVDNFD 187

Query: 186 FWFMGFLRYEKAYRNLQKAISMANEV 211
           FWFMGFL Y+K++  LQ+A+S    V
Sbjct: 188 FWFMGFLNYQKSFNCLQQALSPTGTV 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484173|ref|XP_002273075.2| PREDICTED: GEM-like protein 4-like [Vitis vinifera]

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 110/188 (58%), Positives = 143/188 (76%), Gaps = 8/188 (4%)

Query: 29  TVNADEEDTEMGQRKC--------IESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKI 80
           ++N +E+D E  Q K          E K  NF   IR+HV++GPK SETVK KLSLGA+I
Sbjct: 20  SLNPNEKDKESNQSKVDRKKKMNRHEKKDYNFVQGIREHVRLGPKISETVKGKLSLGARI 79

Query: 81  IQKGGRENIFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSS 140
           +Q GG + +FKQIFG+ EGE+ LKASQCYLSTT GP+AGLLFIS +++AFCSERSI +SS
Sbjct: 80  LQLGGVKRVFKQIFGVREGEKLLKASQCYLSTTAGPLAGLLFISTQRVAFCSERSIKFSS 139

Query: 141 STGELIRTPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRN 200
             GEL+R  YKV IP++K+K ++ SENV  P QKY+EIVTVD+F+FWFMGFL Y+K++  
Sbjct: 140 PNGELVRFHYKVSIPLRKVKRVDPSENVKNPSQKYMEIVTVDNFDFWFMGFLNYQKSFNC 199

Query: 201 LQKAISMA 208
           LQ+A+S +
Sbjct: 200 LQQALSQS 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484157|ref|XP_002272656.2| PREDICTED: GEM-like protein 7-like [Vitis vinifera]

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 107/161 (66%), Positives = 133/161 (82%)

Query: 48  KGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQ 107
           K  NF   +R+HV++GPKFSETVK KLSLGA+I+Q GG + +FKQIFG+ EGE+ LKASQ
Sbjct: 45  KADNFVDGVREHVRLGPKFSETVKGKLSLGARILQVGGVKRVFKQIFGVGEGEKLLKASQ 104

Query: 108 CYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESEN 167
           CYLSTT GPIAGLLFIS+++IAFCS+RSI +SS  GELIR  YKV IP++KI+  N+SEN
Sbjct: 105 CYLSTTGGPIAGLLFISSQRIAFCSDRSIKFSSPNGELIRIHYKVSIPLRKIQRANQSEN 164

Query: 168 VNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAISMA 208
           V  P QKY+EIVTVD+F+FWFMGFL Y+KA+  LQ+A+  A
Sbjct: 165 VKNPSQKYMEIVTVDNFDFWFMGFLNYQKAFSYLQQALCEA 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560017|ref|XP_003548292.1| PREDICTED: putative GEM-like protein 8-like [Glycine max]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/151 (70%), Positives = 127/151 (84%)

Query: 60  VKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQCYLSTTRGPIAG 119
           VKMGP  SE +K KLSLGA+IIQ+GGR NIFK +FG+ E E+ LKASQCYL TT GPIAG
Sbjct: 4   VKMGPNLSEILKGKLSLGARIIQEGGRGNIFKSVFGMQEKEQLLKASQCYLYTTAGPIAG 63

Query: 120 LLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQKYVEIV 179
           +LF+S  K+AF SER I++SS TGEL+R PYKVLIPI +IK +NES+NVNK EQKY+EIV
Sbjct: 64  ILFVSTAKVAFYSERPITFSSVTGELVRAPYKVLIPIGRIKEVNESQNVNKAEQKYIEIV 123

Query: 180 TVDDFEFWFMGFLRYEKAYRNLQKAISMANE 210
           T DD EFWF+GFLRYEKA ++L KAISMAN+
Sbjct: 124 TEDDSEFWFVGFLRYEKALKHLNKAISMANK 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
TAIR|locus:2150823	222	AT5G08350 "AT5G08350" [Arabido	0.857	0.815	0.557	1.5e-49
TAIR|locus:2166806	219	AT5G23370 "AT5G23370" [Arabido	0.815	0.785	0.569	2e-49
TAIR|locus:2166791	210	AT5G23360 "AT5G23360" [Arabido	0.763	0.766	0.571	8.8e-47
TAIR|locus:2133387	233	AT4G01600 "AT4G01600" [Arabido	0.710	0.643	0.450	6.7e-33
TAIR|locus:2183901	272	AT5G13200 "AT5G13200" [Arabido	0.848	0.658	0.383	1.4e-32
TAIR|locus:2032185	259	FIP1 "AT1G28200" [Arabidopsis	0.744	0.606	0.367	2.3e-30
TAIR|locus:505006267	299	GEM "AT2G22475" [Arabidopsis t	0.744	0.525	0.360	7.9e-30

TAIR|locus:2150823 AT5G08350 "AT5G08350" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 102/183 (55%), Positives = 131/183 (71%)

Query:    30 VNADEEDTEMGQRKCI--ESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRE 87
             V A  + +E    K I    K   F   +RD  K+ PK +ETVK KLSLGA+I+Q GG E
Sbjct:    35 VPASSKKSEQSNVKSILKRKKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLE 94

Query:    88 NIFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIR 147
              IFK++F ++EGE+  K  QCYLSTT GPIAGLLFIS+KK+AFCSERSI   S  G++IR
Sbjct:    95 KIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIR 154

Query:   148 TPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAISM 207
               YKV IP+ KI  +N+S+N  KP QKY+E+VTVD F+FWFMGFL Y+KA+  L+KA+S+
Sbjct:   155 VHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKALSL 214

Query:   208 ANE 210
             + E
Sbjct:   215 SFE 217

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2166806 AT5G23370 "AT5G23370" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 98/172 (56%), Positives = 129/172 (75%)

Query:    37 TEMGQRKCIESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGL 96
             T  G+    + K  +F   +RD  K+GPK +ETVK KLSLGA+I+Q GG E I+K++F +
Sbjct:    45 TGKGKSMLRKKKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKV 104

Query:    97 TEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPI 156
             ++ E+  KA QCYLSTT GPIAGLLFIS+KKIAFCSERSI  +S  GEL R  YKV IP+
Sbjct:   105 SDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPL 164

Query:   157 QKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAISMA 208
              KI  +N+S+N  KP QKY+E+VTVD F+FWFMGFL Y+KA+  L++A+S++
Sbjct:   165 CKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQALSLS 216

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2166791 AT5G23360 "AT5G23360" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 92/161 (57%), Positives = 122/161 (75%)

Query:    46 ESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKA 105
             + K  +F    RD  K+GPK +ETVK KLSLGAKI+Q GG E I+K++F + + E+  KA
Sbjct:    46 KKKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKA 105

Query:   106 SQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINES 165
              QCYLSTT G IAGLLFIS+KKIAFCSERSI  +S  G+L R  YKV IP+ KI  +N+S
Sbjct:   106 YQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQS 165

Query:   166 ENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAIS 206
             +N  KP Q+Y+E+VTVD+++FWFMGF+ Y+KA+  L+KA++
Sbjct:   166 QNTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKALN 206

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2133387 AT4G01600 "AT4G01600" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 68/151 (45%), Positives = 102/151 (67%)

Query:    56 IRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQCYLSTTRG 115
             ++DH+K  P  S+   ++LS G K+I +GG E +F++ FG+   E+ L +  CY+STT G
Sbjct:    74 LKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSG 133

Query:   116 PIAGLLFISNKKIAFCSERSISYSSSTG-ELIRTPYKVLIPIQKIKSINESENVNKPEQK 174
             P+ G+++ISN++IAFCS+ +I   SS G   +   YKV++  +KI SI+ S NV KP ++
Sbjct:   134 PVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSER 193

Query:   175 YVEIVTVDDFEFWFMGFLRYEKAYRNLQKAI 205
             YV +VT D FEFWFMGF+ Y  A+  L KA+
Sbjct:   194 YVHMVTRDGFEFWFMGFVSYIDAFNCLNKAL 224

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2183901 AT5G13200 "AT5G13200" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 69/180 (38%), Positives = 108/180 (60%)

Query:    27 HLTVNADEEDTEMGQRKCIESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGR 86
             H T N   E   +G       K    A  +  ++K GP  SET   K++L AK I KGG 
Sbjct:    83 HPTTNNPLEPV-IGMFHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGF 141

Query:    87 ENIFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELI 146
             E++F+QIFG    E   K   CYLSTT GP+AG +++SN ++AFCS+R + +++ +G+  
Sbjct:   142 ESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQES 201

Query:   147 RTPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAIS 206
              + Y+V++P+  + ++N       P +KY+++ TVD  +FWFMGF+ YEKA  +L  ++S
Sbjct:   202 WSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVS 261

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2032185 FIP1 "AT1G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 58/158 (36%), Positives = 100/158 (63%)

Query:    48 KGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQ 107
             K  + A     H+K GP  ++   S+++ G KI+ +GG E +FKQ F     E+ LK   
Sbjct:    98 KAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYA 157

Query:   108 CYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESEN 167
             CYLST+ GP+ G++++S  K+AF S+  +SY     + + + YKV++P  ++K++N S +
Sbjct:   158 CYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKEGE-QTLWSYYKVVLPANQLKAVNPSTS 216

Query:   168 VNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAI 205
                   KY++++++D+ EFWFMGF+ YE A ++LQ+A+
Sbjct:   217 RVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAV 254

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

TAIR|locus:505006267 GEM "AT2G22475" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 57/158 (36%), Positives = 101/158 (63%)

Query:    48 KGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQ 107
             K  + A     H++  P F++    +++   K+  +GG E IF+Q F     E+ L +  
Sbjct:   135 KTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFA 194

Query:   108 CYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESEN 167
             CYLST+ GP+ G+L+IS+ K+A+CS+  +SY +   +   + YKV+IP+ ++K++N S +
Sbjct:   195 CYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKNGD-QTEWSYYKVVIPLHQLKAVNPSAS 253

Query:   168 VNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAI 205
             +  P +KY+++++VD+ EFWFMGFL Y+ A  +LQ ++
Sbjct:   254 IVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSL 291


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      211       211   0.00081  112 3  11 22  0.49    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  168 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.90u 0.19s 21.09t   Elapsed:  00:00:01
  Total cpu time:  20.90u 0.19s 21.09t   Elapsed:  00:00:01
  Start:  Mon May 20 15:29:47 2013   End:  Mon May 20 15:29:48 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010026 "trichome differentiation" evidence=IMP

GO:0010482 "regulation of epidermal cell division" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042732 "D-xylose metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FMW4	GEML8_ARATH	No assigned EC number	0.5697	0.8151	0.7853	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	211
cd13222	127	cd13222, PH-GRAM_GEM, GLABRA 2 expression modulato	2e-80
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	1e-09
pfam02893	60	pfam02893, GRAM, GRAM domain	3e-04
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	0.002

>gnl|CDD|241376 cd13222, PH-GRAM_GEM, GLABRA 2 expression modulator (GEM) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  235 bits (602), Expect = 2e-80
 Identities = 76/127 (59%), Positives = 106/127 (83%)

Query: 81  IQKGGRENIFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSS 140
           +Q+GG E +F+Q FG+  GE+ LKASQCYLSTT GP+AG LFIS  K+AFCS+R +S++S
Sbjct: 1   LQEGGVEKVFRQTFGVGPGEKLLKASQCYLSTTAGPVAGTLFISTAKVAFCSDRPLSFTS 60

Query: 141 STGELIRTPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRN 200
            +G+L+R+ YKV+IP++KIK++N SENV  P +KY++IVTVD FEFWFMGF+ Y+KA++ 
Sbjct: 61  PSGQLVRSYYKVVIPLRKIKAVNPSENVKNPSEKYIQIVTVDGFEFWFMGFVNYQKAFKY 120

Query: 201 LQKAISM 207
           LQ+A+S 
Sbjct: 121 LQQALSQ 127

GEM interacts with CDT1, a pre-replication complex component that is involved in DNA replication, and with TTG1 (Transparent Testa GLABRA 1), a transcriptional regulator of epidermal cell fate. GEM controls the level of histone H3K9 methylation at the promoters of the GLABRA 2 and CAPRICE (CPC) genes, which are essential for epidermis patterning. GEM also regulates cell division in different root cell types. GEM regulates proliferation-differentiation decisions by integrating DNA replication, cell division and transcriptional controls. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 127

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 51.8 bits (125), Expect = 1e-09
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)

Query: 95  GLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLI 154
            L E E+ +    CYLS T GP+ G L+ISN ++ F S                  KV+I
Sbjct: 1   KLPEEEKLIADYSCYLSRT-GPVQGRLYISNYRLCFRSNLP-----------GKLTKVVI 48

Query: 155 PIQKIKSINES 165
           P+  I  I +S
Sbjct: 49  PLADITRIEKS 59

Length = 60

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 96  LTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIP 155
           L   E+ +    CYL     P+ G L+++N ++ F S++                 ++IP
Sbjct: 1   LPPEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSDKF-----------GDLTVLVIP 49

Query: 156 IQKIKSIN 163
           +  I+ + 
Sbjct: 50  LADIERVE 57

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 108 CYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESEN 167
           C      GP+ G L+++N ++ F S        S  EL   P  V+  ++K+   +  EN
Sbjct: 10  CPFH--VGPVEGTLYLTNYRLYFKS----KERDSPTELD-VPLGVISRVEKVGGSSSGEN 62

Query: 168 VNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAI 205
                   +EI    D       F + + + R++ + +
Sbjct: 63  -----SYGLEITC-KDMRNLRFAFKQEDHSRRDIFELL 94

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.39
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.23
PF14470	96	bPH_3: Bacterial PH domain	96.47
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	84.72
PF08498	67	Sterol_MT_C: Sterol methyltransferase C-terminal;	83.22
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	81.53
KOG4347	671	consensus GTPase-activating protein VRP [General f	81.36

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.39  E-value=1.7e-13  Score=96.02  Aligned_cols=66  Identities=33%  Similarity=0.608  Sum_probs=46.0

Q ss_pred             eeeecccCCccchhhhhccceeecCCCcceeeEEeeeceeeeecCCceeeeCCCCCeeeeeEEEEEeccccccccc
Q 028281           89 IFKQIFGLTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINE  164 (211)
Q Consensus        89 iFkQ~F~v~~~EkLlKa~~CYLSTtaGPVaG~LfIST~kvAFcSDrpl~~~sp~G~~~~~yYKVvIPL~kik~Vnp  164 (211)
                      -|++.|..+++|+|...+.|+|..+.+|+.|.||||+.+++|+|+.+-.-.          ++++|||..|.+|..
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~----------~~~~ipl~~I~~i~k   67 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT----------CKFVIPLSDIKSIEK   67 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-----------EEEEEGGGEEEEEE
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce----------EEEEEEhHheeEEEE
Confidence            489999999999999999999999999999999999999999998665443          799999999999874

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.23  E-value=7.4e-12  Score=85.83  Aligned_cols=59  Identities=39%  Similarity=0.702  Sum_probs=51.5

Q ss_pred             CCccchhhhhccceeecCCCcceeeEEeeeceeeeecCCceeeeCCCCCeeeeeEEEEEecccccccccc
Q 028281           96 LTEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINES  165 (211)
Q Consensus        96 v~~~EkLlKa~~CYLSTtaGPVaG~LfIST~kvAFcSDrpl~~~sp~G~~~~~yYKVvIPL~kik~Vnps  165 (211)
                      ..++|+|...|.|+|+ +.+|+.|.||||+.+++|+|+.+-....          +++|||..|.+|+..
T Consensus         2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~~----------~~~ipl~~I~~i~k~   60 (61)
T smart00568        2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLTP----------KVVIPLADITRIEKS   60 (61)
T ss_pred             cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCeeE----------EEEEEHHHeeEEEEC
Confidence            5689999999999999 7799999999999999999976654332          999999999998753

>PF14470 bPH_3: Bacterial PH domain

Probab=96.47  E-value=0.021  Score=41.05  Aligned_cols=94  Identities=17%  Similarity=0.190  Sum_probs=66.1

Q ss_pred             CccchhhhhccceeecCCCcceeeEEeeeceeeeecCCceeeeCCCCCeeeeeEEEEEecccccccccccCCCCCCCceE
Q 028281           97 TEGEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQKYV  176 (211)
Q Consensus        97 ~~~EkLlKa~~CYLSTtaGPVaG~LfIST~kvAFcSDrpl~~~sp~G~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYI  176 (211)
                      .|||+..-...|.+-...+.-.|+|+++++||-|++-.++.      .    .....||+++|.+|+-....   -...|
T Consensus         2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~------~----~~~~~i~y~~I~~v~~~~g~---~~~~i   68 (96)
T PF14470_consen    2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG------G----KKFESIPYDDITSVSFKKGI---LGGKI   68 (96)
T ss_pred             cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC------C----ceEEEEEhhheEEEEEEccc---cccEE
Confidence            58999999999988877888899999999999999873221      1    12589999999999977443   34669


Q ss_pred             EEEEecCceeeeeccccHHHHHHHHHHHHh
Q 028281          177 EIVTVDDFEFWFMGFLRYEKAYRNLQKAIS  206 (211)
Q Consensus       177 qIVTvD~~eFWFMGFvnY~KA~k~Lq~Ais  206 (211)
                      .|.| ++..+=| +-+. ..-++-+-++|+
T Consensus        69 ~i~~-~~~~~~i-~~i~-k~~~~~~~~~i~   95 (96)
T PF14470_consen   69 TIET-NGEKIKI-DNIQ-KGDVKEFYEYIK   95 (96)
T ss_pred             EEEE-CCEEEEE-EEcC-HHHHHHHHHHHh
Confidence            8888 5444433 4442 333344444443

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=84.72  E-value=1.2  Score=33.35  Aligned_cols=85  Identities=25%  Similarity=0.366  Sum_probs=53.6

Q ss_pred             hhhhccceeecCCCcceeeEEeeeceeeeecCCceeeeC-CCC---CeeeeeEEEEEecccccccccccCCCCCCCceEE
Q 028281          102 FLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSS-STG---ELIRTPYKVLIPIQKIKSINESENVNKPEQKYVE  177 (211)
Q Consensus       102 LlKa~~CYLSTtaGPVaG~LfIST~kvAFcSDrpl~~~s-p~G---~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIq  177 (211)
                      .+-++.|-+=|..+-+.|+|.|++..+.|..|..-.... ...   .....+--..+|+.+|+.|-+.--..+  +-=||
T Consensus         2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr--~~AlE   79 (106)
T PF14844_consen    2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLR--DTALE   79 (106)
T ss_dssp             -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTE--EEEEE
T ss_pred             EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCc--ceEEE
Confidence            445788999999999999999999999999981111100 000   001112234589999999985544333  33489


Q ss_pred             EEEecCceeee
Q 028281          178 IVTVDDFEFWF  188 (211)
Q Consensus       178 IVTvD~~eFWF  188 (211)
                      |.+.||..+-|
T Consensus        80 iF~~dg~s~f~   90 (106)
T PF14844_consen   80 IFFSDGRSYFF   90 (106)
T ss_dssp             EEETTS-EEEE
T ss_pred             EEEcCCcEEEE
Confidence            99999988754

>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []

Probab=83.22  E-value=0.87  Score=33.79  Aligned_cols=53  Identities=19%  Similarity=0.300  Sum_probs=47.6

Q ss_pred             hhhhhhcchhhhhhhhhhhcccCCChhHHHHHhhhcchhhhhccCcceeeeec
Q 028281           41 QRKCIESKGSNFACRIRDHVKMGPKFSETVKSKLSLGAKIIQKGGRENIFKQI   93 (211)
Q Consensus        41 ~~nk~~rKae~~a~~i~eh~k~gpsiseta~GKlslGaKil~~GG~ekiFkQ~   93 (211)
                      +|++++|..-...=.+.|-+++.|+=+-.+.--|..+|.-|.+||-++||--.
T Consensus         6 r~t~~Gr~~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPM   58 (67)
T PF08498_consen    6 RMTWLGRFITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPM   58 (67)
T ss_pred             eccHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCch
Confidence            57788888888888899999999999999999999999999999999999643

; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=81.53  E-value=6.5  Score=26.79  Aligned_cols=64  Identities=19%  Similarity=0.267  Sum_probs=46.5

Q ss_pred             ceeeeecCCceeeeCCCCCeeeeeEEEEEecccccccccccCC----CCCCCceEEEEEecCceeeeec
Q 028281          126 KKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENV----NKPEQKYVEIVTVDDFEFWFMG  190 (211)
Q Consensus       126 ~kvAFcSDrpl~~~sp~G~~~~~yYKVvIPL~kik~Vnps~n~----~nPseKYIqIVTvD~~eFWFMG  190 (211)
                      ++.++-.+.-|.+..++.+.....++-+|||..+ .|.+..+.    ..+.+..++|.+.++-.|+|..
T Consensus        19 ~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~   86 (104)
T PF00169_consen   19 KRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSA   86 (104)
T ss_dssp             EEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEE
T ss_pred             EEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEEc
Confidence            4555555666666555554556677889999999 77777776    3778889999998887888764

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=81.36  E-value=1.6  Score=44.42  Aligned_cols=96  Identities=21%  Similarity=0.317  Sum_probs=73.9

Q ss_pred             ecccCCccchhhhhccceeecCCC--cceeeEEeeeceeeeecCCceeeeCCCCCeeeeeEEEEEecccccccccccCCC
Q 028281           92 QIFGLTEGEEFLKASQCYLSTTRG--PIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVN  169 (211)
Q Consensus        92 Q~F~v~~~EkLlKa~~CYLSTtaG--PVaG~LfIST~kvAFcSDrpl~~~sp~G~~~~~yYKVvIPL~kik~Vnps~n~~  169 (211)
                      -.|..+  |+|--.-.|=|-|..-  -..|-||+||..++|.||-+=..            .+++||.-|+.|.-.. ..
T Consensus        14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~c------------~~~~Pl~~vr~ve~~~-~s   78 (671)
T KOG4347|consen   14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWLC------------SFITPLLAVRSVERLD-DS   78 (671)
T ss_pred             ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcccc------------eEeeehhhhhhhhccC-cc
Confidence            456665  9999999999999766  58999999999999999976442            6899999999998554 22


Q ss_pred             CCCCceEEEEEecCceeeeeccccHHHHHHHHH
Q 028281          170 KPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQ  202 (211)
Q Consensus       170 nPseKYIqIVTvD~~eFWFMGFvnY~KA~k~Lq  202 (211)
                      +--..=|-+.|-.+-.|-|-|...=++.+.-+.
T Consensus        79 s~~~~~i~~~~~~~~~~~f~~~~~r~~~~~k~~  111 (671)
T KOG4347|consen   79 SLFTQLISLFTSNMVGMRFGGLTERLKLLSKLH  111 (671)
T ss_pred             ccchhhhHHhhcCcceEEecchhhHHHHHHHHh
Confidence            222233667788899999999887776665444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 28/238 (11%), Positives = 70/238 (29%), Gaps = 62/238 (26%)

Query: 9   QRWLYNIIETFRR-----RQTMTHLTVNADEEDTE-----MGQRKCIESKGSNFACRIRD 58
            R +++ +  F          ++ +  +  + D       + +   +E +       I  
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 59  -HVKMGPKFSETVKSKLSLGAKIIQK----GGREN-----------IFKQI----FGLTE 98
            ++++  K       + +L   I+         ++            +  I      +  
Sbjct: 431 IYLELKVKLEN----EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 99  GEEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIR-TPYKVLI--- 154
            E        +L           F+  K     +  + S  S    L +   YK  I   
Sbjct: 487 PERMTLFRMVFLD--------FRFLEQKIRHDSTAWNAS-GSILNTLQQLKFYKPYICDN 537

Query: 155 -PI--QKIKSI-----NESEN-VNKPEQKYVEIVTVDDFEFWFMGFLRYEKAYRNLQK 203
            P   + + +I        EN +       + I  + + E        +E+A++ +Q+
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI------FEEAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	92.97
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	91.23
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	80.09

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=92.97  E-value=0.28  Score=46.70  Aligned_cols=101  Identities=16%  Similarity=0.190  Sum_probs=61.1

Q ss_pred             ccCCccchhhhhccc--eeecCCCcceeeEEeeeceeeeecCCceeeeCCCCCeeeeeEEEEEecccccccccccCCCCC
Q 028281           94 FGLTEGEEFLKASQC--YLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKP  171 (211)
Q Consensus        94 F~v~~~EkLlKa~~C--YLSTtaGPVaG~LfIST~kvAFcSDrpl~~~sp~G~~~~~yYKVvIPL~kik~Vnps~n~~nP  171 (211)
                      |...|||.+...-.-  |++.-.||+.|+|||++-|+.|.++..        +.   .+.+-|||..|..|.........
T Consensus         7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~--------~~---~~~~~iPL~~I~~vek~~~~s~~   75 (528)
T 1zsq_A            7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFVLDASLGVINRVEKIGGASSR   75 (528)
T ss_dssp             CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEEEEEEGGGEEEEEEECCTTCC
T ss_pred             CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC--------Cc---cEEEEeeccceEEEEEcCCCCcC
Confidence            567899999855211  555567999999999999999998521        11   24678999888777643221111


Q ss_pred             C--CceEEEEEecCceeeeeccccHHHHHHHHHHHHh
Q 028281          172 E--QKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAIS  206 (211)
Q Consensus       172 s--eKYIqIVTvD~~eFWFMGFvnY~KA~k~Lq~Ais  206 (211)
                      .  --.|+|..-|-. .+=.+|-.=+...+.+-++|+
T Consensus        76 ~~~~~~l~I~CKDfr-~~~f~f~~~~~~~~~v~~~L~  111 (528)
T 1zsq_A           76 GENSYGLETVCKDIR-NLRFAHKPEGRTRRSIFENLM  111 (528)
T ss_dssp             STTCSEEEEEETTTE-EEEEECCGGGCCHHHHHHHHH
T ss_pred             CCCCceEEEEccCCe-EEEEEecCchHHHHHHHHHHH
Confidence            1  124777776644 444445433232333444443

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=91.23  E-value=0.56  Score=45.93  Aligned_cols=107  Identities=15%  Similarity=0.204  Sum_probs=56.7

Q ss_pred             hhcchhhhhccCcceeeeecccCCccchhhhhcc-c-eeecCCCcceeeEEeeeceeeeecCCceeeeCCCCCeeeeeEE
Q 028281           74 LSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQ-C-YLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYK  151 (211)
Q Consensus        74 lslGaKil~~GG~ekiFkQ~F~v~~~EkLlKa~~-C-YLSTtaGPVaG~LfIST~kvAFcSDrpl~~~sp~G~~~~~yYK  151 (211)
                      +++.-++|+.|-.. -=.--|...|||.+...-. . |+..-.||+.|+|||++.|+.|.++..        +.   .+.
T Consensus        60 ~~~~~~~~~~~~~~-~~~~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~--------~~---~~~  127 (657)
T 1lw3_A           60 FSPDLRVLRESNKL-AEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFV  127 (657)
T ss_dssp             ------------------CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEE
T ss_pred             hhhhhhhhhccccc-ccCCCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC--------Cc---ceE
Confidence            34444555554321 1112377899999984421 1 444456899999999999999998521        11   245


Q ss_pred             EEEecccccccccccCCCCCCC--ceEEEEEecCceeeeecccc
Q 028281          152 VLIPIQKIKSINESENVNKPEQ--KYVEIVTVDDFEFWFMGFLR  193 (211)
Q Consensus       152 VvIPL~kik~Vnps~n~~nPse--KYIqIVTvD~~eFWFMGFvn  193 (211)
                      +-|||..|..|..........+  -.|+|..-|- ..+=.+|-.
T Consensus       128 ~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKDf-R~~~f~f~~  170 (657)
T 1lw3_A          128 LDASLGVINRVEKIGGASSRGENSYGLETVCKDI-RNLRFAHKP  170 (657)
T ss_dssp             EEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTT-EEEEEECCG
T ss_pred             EEecccceEEEEecCCCcccCCCCceEEEEecCC-cEEEEEeCC
Confidence            7899988888875332111111  2477776664 444444543

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=80.09  E-value=2  Score=33.91  Aligned_cols=51  Identities=20%  Similarity=0.193  Sum_probs=34.8

Q ss_pred             CCcceeeEEeeeceeeeecCCceeeeCCCCCeeeeeEEEEEecccccccccccCCCCCCCceE
Q 028281          114 RGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQKYV  176 (211)
Q Consensus       114 aGPVaG~LfIST~kvAFcSDrpl~~~sp~G~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYI  176 (211)
                      ++--.|.||++|.||.|-.+..     +       ..-+.|||..|+.+...+..-..+-|++
T Consensus        35 ~~~k~G~l~LTshRli~~d~~~-----~-------~~s~~lpl~~v~~~e~~~~~f~~s~Ki~   85 (140)
T 2hth_B           35 IKFDAGTLLLSTHRLIWRDQKN-----H-------ECCMAILLSQIVFIEEQAAGIGKSAKIV   85 (140)
T ss_dssp             SCCCCEEEEEESSEEEEEETTC-----C-------SCCEEEEGGGEEEEEEECCTTSSCCEEE
T ss_pred             CCCcCCEEEEecCEEEEecCCC-----C-------ceEEEEEhHHeeeeeeeccccccCceEE
Confidence            4557899999999999965432     0       0346788888877777666555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	96.53
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	91.73

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.002  Score=48.12  Aligned_cols=81  Identities=19%  Similarity=0.280  Sum_probs=53.1

Q ss_pred             Cccchhhhh--ccceeecCCCcceeeEEeeeceeeeecCCceeeeCCCCCeeeeeEEEEEecccccccccccCCC--CCC
Q 028281           97 TEGEEFLKA--SQCYLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVN--KPE  172 (211)
Q Consensus        97 ~~~EkLlKa--~~CYLSTtaGPVaG~LfIST~kvAFcSDrpl~~~sp~G~~~~~yYKVvIPL~kik~Vnps~n~~--nPs  172 (211)
                      .|||.+.-.  -.=|+....||+-|+||++|-|+.|-++..       ..    .+.+-|||..|..|.......  +..
T Consensus         6 lpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~-------~~----~~~~~ipl~~I~~v~k~~~~~~~~~~   74 (125)
T d1zsqa1           6 LPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER-------DP----PFVLDASLGVINRVEKIGGASSRGEN   74 (125)
T ss_dssp             CTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS-------SS----CEEEEEEGGGEEEEEEECCTTCCSTT
T ss_pred             CCCcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcCCC-------Cc----cEEEEeccceeeeeeecccccccCCc
Confidence            577766422  123566668999999999999999976421       11    134579999998887433222  222


Q ss_pred             CceEEEEEecCceeee
Q 028281          173 QKYVEIVTVDDFEFWF  188 (211)
Q Consensus       173 eKYIqIVTvD~~eFWF  188 (211)
                      --.|+|..-|.--+=|
T Consensus        75 ~~~L~I~CKDfr~~~f   90 (125)
T d1zsqa1          75 SYGLETVCKDIRNLRF   90 (125)
T ss_dssp             CSEEEEEETTTEEEEE
T ss_pred             cccEEEEeccCeEEEE
Confidence            2469999988665544

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.73  E-value=0.44  Score=35.11  Aligned_cols=77  Identities=18%  Similarity=0.171  Sum_probs=53.1

Q ss_pred             ceeeEEeeeceeeeecCCceeeeCCCCCeeeeeEEEEEecccccccccccCCCCCCCceEEEEEecCceeeeeccccHHH
Q 028281          117 IAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYEK  196 (211)
Q Consensus       117 VaG~LfIST~kvAFcSDrpl~~~sp~G~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIqIVTvD~~eFWFMGFvnY~K  196 (211)
                      +.|+|||++.+|+|..+.+=   +         -.|.+++..|+.-..|-  +..+.-=++||.-|+-.|=|- |.|+.-
T Consensus        20 ~~GtL~l~~d~l~W~p~~~~---~---------~~v~~~~~~I~~~q~Sp--e~s~Kv~Lkiv~~~~~s~~F~-Ftn~~~   84 (108)
T d2rnrb1          20 QDGALYLMAERIAWAPEGKD---R---------FTISHMYADIKCQKISP--EGKAKIQLQLVLHAGDTTNFH-FSNEST   84 (108)
T ss_dssp             CEEEEEECSSEEEEEESSCS---S---------CSEEEETTTEEEEEECC--TTCSSEEEEEEETTSCEEEEE-ECCTTT
T ss_pred             CCcEEEEEcCeEEEEcCCCC---C---------ceEEEEhhhhhceecCC--CCcccceeEEEEeCCCeEEEE-ECChHH
Confidence            57999999999999765321   1         25889999998765443  444555699999998887774 778854


Q ss_pred             HH-------HHHHHHHhhh
Q 028281          197 AY-------RNLQKAISMA  208 (211)
Q Consensus       197 A~-------k~Lq~Ais~~  208 (211)
                      |.       .-||++|...
T Consensus        85 ~~~~Rd~iK~~Lq~~i~~~  103 (108)
T d2rnrb1          85 AVKERDAVKDLLQQLLPKF  103 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            42       2455555544