Citrus Sinensis ID: 028291

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
MSSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINIFVVGLLKLKIWWMCILYGNEHEL
ccccccEEEEccccccccccccccccEEEccccccccccEEEEcccccccHHHHHHccccEEEEEEEEcccccccccccEEccccccEEEcccccccccccEEEEccccEEEEEEccccccccccccccccccccEEEEEcHHHHcccccccEEEEEEEccHHHHHHcHHHHHHHHHHHHHHccccccEEEEEEEEEEEEEEEEccccccc
ccccccEEEccccccccccccccccccccccccccccHHEHHHHHcccccHHHHHHccccEEEEEEcccccccccccccEEcccccccEEccHcHEcEccHEEEEccccEEEEEcccccccccccccccHHcccEEEEEccHHHHcccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccccccHHEHHHEEEEHHHHHHcccccc
MSSSSVILYetrqgksvkppppvtskyivkdtgncspryircslnqipctenllklssmpsALMVQVLalpdpsedpipvvdfgesglvrccccrgyrnpfmefvdngksfvcnfcgldgrcldaderpelcrGTVEFAASREFmmrnvmppVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINIFVVGLLKLKIWWMCILYGNEHEL
MSSSSVILYetrqgksvkppppvtskyiVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINIFVVGLLKLKIWWMCILYGNEHEL
MSSSSVILYETRQGKSVKppppVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINIFVVGLLKLKIWWMCILYGNEHEL
*************************KYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINIFVVGLLKLKIWWMCILYG*****
****SVI****RQ*****PPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINIFVVGLLKLKIWWMCILYGN*H**
MSSSSVILY***********PPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINIFVVGLLKLKIWWMCILYGNEHEL
****SVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINIFVVGLLKLKIWWMCILYGNE***
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MSSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINIFVVGLLKLKIWWMCILYGNEHEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query211 2.2.26 [Sep-21-2011]
Q9M081 1080 Protein transport protein yes no 0.872 0.170 0.636 9e-70
Q9M291 1096 Protein transport protein no no 0.872 0.167 0.626 3e-67
P53992 1094 Protein transport protein yes no 0.786 0.151 0.406 6e-31
Q9SFU0 1038 Protein transport protein no no 0.715 0.145 0.379 2e-28
Q1E6U9 932 Protein transport protein N/A no 0.720 0.163 0.401 8e-28
Q7S4P3 950 Protein transport protein N/A no 0.715 0.158 0.391 1e-27
O94855 1032 Protein transport protein no no 0.786 0.160 0.346 9e-27
Q2ULI0 913 Protein transport protein no no 0.777 0.179 0.383 1e-26
Q4WLP1 919 Protein transport protein no no 0.758 0.174 0.383 1e-26
A1DP06 919 Protein transport protein N/A no 0.758 0.174 0.383 2e-26
>sp|Q9M081|SC24B_ARATH Protein transport protein Sec24-like At4g32640 OS=Arabidopsis thaliana GN=At4g32640 PE=1 SV=3 Back     alignment and function desciption
 Score =  263 bits (671), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 126/198 (63%), Positives = 149/198 (75%), Gaps = 14/198 (7%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQSNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG    
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCGYTDE 460

Query: 119 -----------DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQT 167
                      DGR  D DERPELCRGTVEF A++E+M+R+ MP VYFFLIDVS +A+QT
Sbjct: 461 TPRDYHCNLGPDGRRRDVDERPELCRGTVEFVATKEYMVRDPMPAVYFFLIDVSMNAIQT 520

Query: 168 GATAAACSAIMQVISDLP 185
           GATAAAC+AI QV+SDLP
Sbjct: 521 GATAAACNAIQQVLSDLP 538
Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana GN=CEF PE=1 SV=3 Back     alignment and function description
>sp|P53992|SC24C_HUMAN Protein transport protein Sec24C OS=Homo sapiens GN=SEC24C PE=1 SV=3 Back     alignment and function description
>sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2 Back     alignment and function description
>sp|Q1E6U9|SEC24_COCIM Protein transport protein SEC24 OS=Coccidioides immitis (strain RS) GN=SEC24 PE=3 SV=2 Back     alignment and function description
>sp|Q7S4P3|SEC24_NEUCR Protein transport protein sec-24 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sec-24 PE=3 SV=1 Back     alignment and function description
>sp|O94855|SC24D_HUMAN Protein transport protein Sec24D OS=Homo sapiens GN=SEC24D PE=1 SV=2 Back     alignment and function description
>sp|Q2ULI0|SEC24_ASPOR Protein transport protein sec24 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sec24 PE=3 SV=1 Back     alignment and function description
>sp|Q4WLP1|SEC24_ASPFU Protein transport protein sec24 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=sec24 PE=3 SV=2 Back     alignment and function description
>sp|A1DP06|SEC24_NEOFI Protein transport protein SEC24 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sec24 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
224123334 1103 predicted protein [Populus trichocarpa] 0.876 0.167 0.648 1e-70
359493759 1124 PREDICTED: protein transport protein Sec 0.876 0.164 0.648 2e-70
255542372 1094 Protein transport protein Sec24C, putati 0.876 0.169 0.643 2e-69
334187094 1080 sec24-like transport protein [Arabidopsi 0.872 0.170 0.636 5e-68
443609449 1092 Sec24-like transport protein [Arabidopsi 0.872 0.168 0.636 5e-68
7270168 1069 putative protein [Arabidopsis thaliana] 0.872 0.172 0.636 5e-68
7486407 1008 hypothetical protein F4D11.160 - Arabido 0.872 0.182 0.636 5e-68
297802748 1067 hypothetical protein ARALYDRAFT_491448 [ 0.872 0.172 0.631 2e-67
224131342 1080 predicted protein [Populus trichocarpa] 0.862 0.168 0.642 3e-67
7529768 1122 putative protein [Arabidopsis thaliana] 0.900 0.169 0.612 4e-67
>gi|224123334|ref|XP_002319053.1| predicted protein [Populus trichocarpa] gi|222857429|gb|EEE94976.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 129/199 (64%), Positives = 152/199 (76%), Gaps = 14/199 (7%)

Query: 4   SSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSAL 63
           SSVIL++TR G    PPPP TS YIV DTGNCSPRY+RC++NQIPCT +LL  S MP AL
Sbjct: 328 SSVILHDTRAGNQANPPPPATSDYIVSDTGNCSPRYMRCTINQIPCTVDLLSTSGMPLAL 387

Query: 64  MVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL----- 118
           +VQ LALP PSEDP+ VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG      
Sbjct: 388 LVQPLALPHPSEDPVQVVDFGESGPVRCSRCKGYINPFMKFIDQGRQFICNLCGFTDETP 447

Query: 119 ---------DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGA 169
                    DGR  DADERPELCRGTVEF A++E+M+R+ MP VYFFLIDVS  A+QTGA
Sbjct: 448 RDYHCNLGPDGRRRDADERPELCRGTVEFVATKEYMVRDPMPAVYFFLIDVSMHAIQTGA 507

Query: 170 TAAACSAIMQVISDLPINI 188
           TAAACS+I QVI+DLP++ 
Sbjct: 508 TAAACSSINQVIADLPVSF 526

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359493759|ref|XP_002279640.2| PREDICTED: protein transport protein Sec24-like At4g32640-like [Vitis vinifera] gi|302143220|emb|CBI20515.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255542372|ref|XP_002512249.1| Protein transport protein Sec24C, putative [Ricinus communis] gi|223548210|gb|EEF49701.1| Protein transport protein Sec24C, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|334187094|ref|NP_194990.5| sec24-like transport protein [Arabidopsis thaliana] gi|334187096|ref|NP_001119101.5| sec24-like transport protein [Arabidopsis thaliana] gi|347595780|sp|Q9M081.3|SC24B_ARATH RecName: Full=Protein transport protein Sec24-like At4g32640 gi|332660694|gb|AEE86094.1| sec24-like transport protein [Arabidopsis thaliana] gi|332660695|gb|AEE86095.1| sec24-like transport protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|443609449|dbj|BAM76809.1| Sec24-like transport protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7270168|emb|CAB79981.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7486407|pir||T04462 hypothetical protein F4D11.160 - Arabidopsis thaliana gi|3063706|emb|CAA18597.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297802748|ref|XP_002869258.1| hypothetical protein ARALYDRAFT_491448 [Arabidopsis lyrata subsp. lyrata] gi|297315094|gb|EFH45517.1| hypothetical protein ARALYDRAFT_491448 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224131342|ref|XP_002328515.1| predicted protein [Populus trichocarpa] gi|222838230|gb|EEE76595.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|7529768|emb|CAB86912.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
TAIR|locus:2100202 1096 CEF "AT3G44340" [Arabidopsis t 0.872 0.167 0.606 1.6e-57
ZFIN|ZDB-GENE-030131-4487 1241 sec24c "SEC24 family, member C 0.772 0.131 0.402 1.6e-29
UNIPROTKB|E7EP00 975 SEC24C "Protein transport prot 0.772 0.167 0.402 2.9e-29
UNIPROTKB|G5EA31 1042 SEC24C "SEC24 related gene fam 0.772 0.156 0.402 3.2e-29
UNIPROTKB|P53992 1094 SEC24C "Protein transport prot 0.772 0.148 0.402 3.5e-29
UNIPROTKB|E1BIU0 1094 SEC24C "Uncharacterized protei 0.772 0.148 0.407 4.5e-29
UNIPROTKB|E1BUD8 1119 SEC24C "Uncharacterized protei 0.767 0.144 0.405 6e-29
UNIPROTKB|E2RE90 1096 SEC24C "Uncharacterized protei 0.772 0.148 0.396 9.4e-29
UNIPROTKB|J9JHK6 1119 SEC24C "Uncharacterized protei 0.772 0.145 0.396 9.7e-29
RGD|1597739 1027 Sec24c "SEC24 family, member C 0.772 0.158 0.396 1.1e-28
TAIR|locus:2100202 CEF "AT3G44340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 600 (216.3 bits), Expect = 1.6e-57, P = 1.6e-57
 Identities = 120/198 (60%), Positives = 143/198 (72%)

Query:     2 SSSSVILYETRQGKSVKXXXXVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
             SSSS I+YETR           T  YI +DTGN SPRY+RC++NQIPCT +LL  S M  
Sbjct:   344 SSSSPIVYETRVENKANPPPPTTVDYITRDTGNSSPRYMRCTINQIPCTVDLLSTSGMQL 403

Query:    62 ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
             AL+VQ +AL  PSE+PI VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG    
Sbjct:   404 ALIVQPMALSHPSEEPIQVVDFGESGPVRCSRCKGYVNPFMKFIDQGRKFICNLCGYTDE 463

Query:   119 -----------DGRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQT 167
                        DGR  DADERPELCRGTV+F A++E+M+R+ MP VYFFLIDVS +A+QT
Sbjct:   464 TPRDYQCNLGPDGRRRDADERPELCRGTVDFVATKEYMVRDPMPAVYFFLIDVSMNAIQT 523

Query:   168 GATAAACSAIMQVISDLP 185
             GATAAACSAI QV+SDLP
Sbjct:   524 GATAAACSAIQQVLSDLP 541
GO:0005215 "transporter activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=ISS
GO:0030127 "COPII vesicle coat" evidence=IEA
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0005829 "cytosol" evidence=IDA
ZFIN|ZDB-GENE-030131-4487 sec24c "SEC24 family, member C (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E7EP00 SEC24C "Protein transport protein Sec24C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G5EA31 SEC24C "SEC24 related gene family, member C (S. cerevisiae), isoform CRA_b" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P53992 SEC24C "Protein transport protein Sec24C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BIU0 SEC24C "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BUD8 SEC24C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RE90 SEC24C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9JHK6 SEC24C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1597739 Sec24c "SEC24 family, member C (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
COG5028 861 COG5028, COG5028, Vesicle coat complex COPII, subu 2e-36
cd01479 244 cd01479, Sec24-like, Sec24-like: Protein and membr 2e-09
pfam04811 241 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain 3e-09
cd01468 239 cd01468, trunk_domain, trunk domain 3e-08
pfam0481039 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger 4e-08
PTZ00395 1560 PTZ00395, PTZ00395, Sec24-related protein; Provisi 4e-07
PLN00162 761 PLN00162, PLN00162, transport protein sec23; Provi 5e-05
>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score =  134 bits (339), Expect = 2e-36
 Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 17/181 (9%)

Query: 19  PPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPI 78
            PP  T+     +  NCSP+Y+R ++  IP T +LLK S +P  L+++      P EDP+
Sbjct: 133 VPPLTTNFVGS-EQSNCSPKYVRSTMYAIPETNDLLKKSKIPFGLVIRPFLELYPEEDPV 191

Query: 79  PVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--------------DGRCLD 124
           P+V+ G   +VRC  CR Y NPF++F++ G+ + CN C                +    D
Sbjct: 192 PLVEDGS--IVRCRRCRSYINPFVQFIEQGRKWRCNICRSKNDVPEGFDNPSGPNDPRSD 249

Query: 125 ADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDL 184
              RPEL  G V+F A +E+ +R   PPVY FLIDVS +A++ G   AA  AI++ +  +
Sbjct: 250 RYSRPELKSGVVDFLAPKEYSLRQPPPPVYVFLIDVSFEAIKNGLVKAAIRAILENLDQI 309

Query: 185 P 185
           P
Sbjct: 310 P 310

Length = 861
>gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain Back     alignment and domain information
>gnl|CDD|238745 cd01468, trunk_domain, trunk domain Back     alignment and domain information
>gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger Back     alignment and domain information
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional Back     alignment and domain information
>gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 211
KOG1984 1007 consensus Vesicle coat complex COPII, subunit SFB3 100.0
KOG1985 887 consensus Vesicle coat complex COPII, subunit SEC2 100.0
COG5028 861 Vesicle coat complex COPII, subunit SEC24/subunit 100.0
PLN00162 761 transport protein sec23; Provisional 100.0
PTZ00395 1560 Sec24-related protein; Provisional 100.0
KOG1986 745 consensus Vesicle coat complex COPII, subunit SEC2 99.97
COG5047 755 SEC23 Vesicle coat complex COPII, subunit SEC23 [I 99.95
PF0481040 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: 99.52
PF04811 243 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I 99.44
cd01479 244 Sec24-like Sec24-like: Protein and membrane traffi 99.43
cd01468 239 trunk_domain trunk domain. COPII-coated vesicles c 99.41
cd01478 267 Sec23-like Sec23-like: Protein and membrane traffi 97.81
cd01463 190 vWA_VGCC_like VWA Voltage gated Calcium channel li 96.73
PF13768155 VWA_3: von Willebrand factor type A domain 96.38
cd01456 206 vWA_ywmD_type VWA ywmD type:Von Willebrand factor 95.96
cd01472 164 vWA_collagen von Willebrand factor (vWF) type A do 95.95
cd01471 186 vWA_micronemal_protein Micronemal proteins: The To 95.91
cd01477 193 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand 95.9
cd01475 224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 95.88
cd01464 176 vWA_subfamily VWA subfamily: Von Willebrand factor 95.78
cd01461 171 vWA_interalpha_trypsin_inhibitor vWA_interalpha tr 95.78
cd01466155 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact 95.77
cd01469 177 vWA_integrins_alpha_subunit Integrins are a class 95.73
TIGR03788 596 marine_srt_targ marine proteobacterial sortase tar 95.68
cd01481 165 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V 95.53
cd01482 164 vWA_collagen_alphaI-XII-like Collagen: The extrace 95.47
cd01480 186 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI 95.35
cd01465 170 vWA_subgroup VWA subgroup: Von Willebrand factor t 95.18
COG4245 207 TerY Uncharacterized protein encoded in toxicity p 95.07
PF13519 172 VWA_2: von Willebrand factor type A domain; PDB: 3 94.6
cd01474 185 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi 94.53
cd00198161 vWFA Von Willebrand factor type A (vWA) domain was 94.48
smart00327 177 VWA von Willebrand factor (vWF) type A domain. VWA 94.48
PRK13685 326 hypothetical protein; Provisional 94.07
cd01476 163 VWA_integrin_invertebrates VWA_integrin (invertebr 94.07
TIGR03436 296 acidobact_VWFA VWFA-related Acidobacterial domain. 93.92
cd01450161 vWFA_subfamily_ECM Von Willebrand factor type A (v 93.7
cd01473 192 vWA_CTRP CTRP for CS protein-TRAP-related protein: 93.67
cd01467 180 vWA_BatA_type VWA BatA type: Von Willebrand factor 92.9
cd01451 178 vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch 91.59
cd01454 174 vWA_norD_type norD type: Denitrifying bacteria con 91.34
cd01470 198 vWA_complement_factors Complement factors B and C2 90.38
cd01458 218 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter 90.33
PTZ00441 576 sporozoite surface protein 2 (SSP2); Provisional 89.3
TIGR00868 863 hCaCC calcium-activated chloride channel protein 1 88.85
PF09967126 DUF2201: VWA-like domain (DUF2201); InterPro: IPR0 88.53
cd01462152 VWA_YIEM_type VWA YIEM type: Von Willebrand factor 88.14
PRK13406 584 bchD magnesium chelatase subunit D; Provisional 87.86
PRK0039846 rpoP DNA-directed RNA polymerase subunit P; Provis 87.63
cd01453 183 vWA_transcription_factor_IIH_type Transcription fa 86.32
TIGR02031 589 BchD-ChlD magnesium chelatase ATPase subunit D. Th 86.19
PF1371937 zinc_ribbon_5: zinc-ribbon domain 84.73
cd01452 187 VWA_26S_proteasome_subunit 26S proteasome plays a 84.49
PF02905146 EBV-NA1: Epstein Barr virus nuclear antigen-1, DNA 82.53
PF0908268 DUF1922: Domain of unknown function (DUF1922); Int 81.38
TIGR02442 633 Cob-chelat-sub cobaltochelatase subunit. A number 81.07
COG1240 261 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis 80.88
COG288861 Predicted Zn-ribbon RNA-binding protein with a fun 80.8
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=9.2e-55  Score=412.41  Aligned_cols=189  Identities=48%  Similarity=0.972  Sum_probs=181.5

Q ss_pred             CCCCCCcceeEecCCCCCCCCeeEeeccccCCCHHhhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCCCCeE
Q 028291           18 KPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGY   97 (211)
Q Consensus        18 ~~pp~~~~~~~~~d~gn~~p~~iR~T~~~~P~t~~~~~~~~iPlg~vv~Pf~~~~~~e~~vP~v~~~~~~p~RC~~C~aY   97 (211)
                      .+||++||+|++.|||||+|+|||+|+|+||.|.++++.++||||++|+||+.+...|+++|+||+++.+|+||+||+||
T Consensus       268 ~~PPl~TTd~~~~DqGN~sPr~mr~T~Y~iP~T~Dl~~as~iPLalvIqPfa~l~p~E~~~~vVd~g~sgPvRC~RCkaY  347 (1007)
T KOG1984|consen  268 QPPPLVTTDFFIQDQGNCSPRFMRCTMYTIPCTNDLLKASQIPLALVIQPFATLTPNEAPVPVVDLGESGPVRCNRCKAY  347 (1007)
T ss_pred             CCCCCcccceEEeccCCCCcchheeecccCCccHhHHHhcCCcceeEecccccCCcccCCCceecCCCCCCcchhhhhhh
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccceEEEeCCceEEEecCCC--------------CCcccCCCCCCCCCCcceEEEechhhhcc--CCCCcEEEEEEEcc
Q 028291           98 RNPFMEFVDNGKSFVCNFCGL--------------DGRCLDADERPELCRGTVEFAASREFMMR--NVMPPVYFFLIDVS  161 (211)
Q Consensus        98 iNp~~~~~~~g~~w~C~~C~~--------------~~~~~d~~~rpEL~~~tvE~~~p~~y~~r--~~~pp~yvFvIDvS  161 (211)
                      ||||++|+.+|++|+||||+.              +|+|.|.+.||||..|+|||+++++|+++  ++.||+|||+||||
T Consensus       348 inPFmqF~~~gr~f~Cn~C~~~n~vp~~yf~~L~~~grr~D~~erpEL~~Gt~dfvatk~Y~~~~k~p~ppafvFmIDVS  427 (1007)
T KOG1984|consen  348 INPFMQFIDGGRKFICNFCGSKNQVPDDYFNHLGPTGRRVDVEERPELCLGTVDFVATKDYCRKTKPPKPPAFVFMIDVS  427 (1007)
T ss_pred             cCcceEEecCCceEEecCCCccccCChhhcccCCCcccccccccCchhcccccceeeehhhhhcCCCCCCceEEEEEEee
Confidence            999999999999999999998              36789999999999999999999999987  89999999999999


Q ss_pred             hhhHhhcHHHHHHHHHHHHHhcCCCCC--cEEEEEEeCCeEEEeecC
Q 028291          162 TDAVQTGATAAACSAIMQVISDLPINI--FVVGLLKLKIWWMCILYG  206 (211)
Q Consensus       162 ~~a~~~g~l~~v~~sL~~~l~~lp~~~--~~Vg~Itfd~~i~~~~~~  206 (211)
                      ++|+++|++.+++++|++.|+.++.+.  ++|||||||++|+.|.+-
T Consensus       428 y~Ai~~G~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~  474 (1007)
T KOG1984|consen  428 YNAISNGAVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLS  474 (1007)
T ss_pred             hhhhhcchHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccC
Confidence            999999999999999999999999643  899999999999988764

>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN00162 transport protein sec23; Provisional Back     alignment and domain information
>PTZ00395 Sec24-related protein; Provisional Back     alignment and domain information
>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>cd01468 trunk_domain trunk domain Back     alignment and domain information
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta Back     alignment and domain information
>PF13768 VWA_3: von Willebrand factor type A domain Back     alignment and domain information
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins Back     alignment and domain information
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell Back     alignment and domain information
>cd01477 vWA_F09G8-8_type VWA F09G8 Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) Back     alignment and domain information
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration Back     alignment and domain information
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein Back     alignment and domain information
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions Back     alignment and domain information
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] Back     alignment and domain information
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A Back     alignment and domain information
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax Back     alignment and domain information
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>smart00327 VWA von Willebrand factor (vWF) type A domain Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions Back     alignment and domain information
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain Back     alignment and domain information
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology Back     alignment and domain information
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) Back     alignment and domain information
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases Back     alignment and domain information
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation Back     alignment and domain information
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain Back     alignment and domain information
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>TIGR00868 hCaCC calcium-activated chloride channel protein 1 Back     alignment and domain information
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function Back     alignment and domain information
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) Back     alignment and domain information
>PRK13406 bchD magnesium chelatase subunit D; Provisional Back     alignment and domain information
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional Back     alignment and domain information
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme Back     alignment and domain information
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D Back     alignment and domain information
>PF13719 zinc_ribbon_5: zinc-ribbon domain Back     alignment and domain information
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins Back     alignment and domain information
>PF02905 EBV-NA1: Epstein Barr virus nuclear antigen-1, DNA-binding domain; InterPro: IPR004186 The Epstein-Barr virus (strain GD1) nuclear antigen 1 (EBNA1) binds to and activates DNA replication from the latent origin of replication Back     alignment and domain information
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus Back     alignment and domain information
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit Back     alignment and domain information
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] Back     alignment and domain information
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
3eh2_A 766 Crystal Structure Of The Human Copii-Coat Protein S 2e-31
3efo_B 770 Crystal Structure Of The Mammalian Copii-Coat Prote 3e-27
3egd_B 748 Crystal Structure Of The Mammalian Copii-Coat Prote 5e-22
2nup_B 753 Crystal Structure Of The Human Sec23a24A HETERODIME 6e-22
3eh1_A 751 Crystal Structure Of The Human Copii-Coat Protein S 9e-21
1pcx_A 810 Crystal Structure Of The Copii Coat Subunit, Sec24, 2e-20
1m2v_B 926 Crystal Structure Of The Yeast Sec2324 HETERODIMER 2e-20
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 Back     alignment and structure 
Iteration: 1

 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 104/179 (58%), Gaps = 16/179 (8%)
Query: 23  VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
           VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct: 29  VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 88
Query: 83  FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
            GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +DA +R
Sbjct: 89  HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 148
Query: 129 PELCRGTVEFAASREFMMRNVM--PPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP 185
           PEL  G+ EF A+ ++   N    PP + F+IDVS +A++TG     C  +  ++  LP
Sbjct: 149 PELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLP 207
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 Back     alignment and structure
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 Back     alignment and structure
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 Back     alignment and structure
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 Back     alignment and structure
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 Back     alignment and structure
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
3eh2_A 766 Protein transport protein SEC24C; copii-coat prote 1e-46
3efo_B 770 SEC24 related gene family, member D; copii, coat p 1e-46
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 5e-44
1pcx_A 810 Protein transport protein SEC24; 2.50A {Saccharomy 2e-40
3eh1_A 751 Protein transport protein SEC24B; copii coat prote 6e-37
2nut_A 769 Protein transport protein SEC23A; human copii SEC2 2e-33
1m2o_A 768 SEC23, protein transport protein SEC23, SEC23P; zi 2e-29
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 Back     alignment and structure
 Score =  162 bits (411), Expect = 1e-46
 Identities = 71/183 (38%), Positives = 104/183 (56%), Gaps = 16/183 (8%)

Query: 19  PPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPI 78
            PP VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E   
Sbjct: 25  VPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASP 84

Query: 79  PVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--------------DGRCLD 124
            VVD GESG +RC  C+ Y  PFM+F++ G+ F C FC                 G+ +D
Sbjct: 85  YVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVD 144

Query: 125 ADERPELCRGTVEFAASREFM--MRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVIS 182
           A +RPEL  G+ EF A+ ++    +   PP + F+IDVS +A++TG     C  +  ++ 
Sbjct: 145 AYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLD 204

Query: 183 DLP 185
            LP
Sbjct: 205 FLP 207
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query211
3efo_B 770 SEC24 related gene family, member D; copii, coat p 100.0
3eh2_A 766 Protein transport protein SEC24C; copii-coat prote 100.0
1pcx_A 810 Protein transport protein SEC24; 2.50A {Saccharomy 100.0
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 100.0
3eh1_A 751 Protein transport protein SEC24B; copii coat prote 100.0
2nut_A 769 Protein transport protein SEC23A; human copii SEC2 100.0
1m2o_A 768 SEC23, protein transport protein SEC23, SEC23P; zi 100.0
2yrc_A59 Protein transport protein SEC23A; zinc binding, co 99.42
1mjn_A 179 Integrin alpha-L; rossmann fold, immune system; 1. 96.68
3zqk_A 199 VON willebrand factor; blood clotting, adamts-13, 96.59
2xgg_A178 Microneme protein 2; A/I domain, cell adhesion, hy 96.55
1ijb_A 202 VON willebrand factor; dinucleotide-binding fold, 96.5
1atz_A 189 VON willebrand factor; collagen-binding, hemostasi 96.42
1mf7_A 194 Integrin alpha M; cell adhesion; 1.25A {Homo sapie 96.35
3ibs_A 218 Conserved hypothetical protein BATB; structural ge 96.35
1n3y_A 198 Integrin alpha-X; alpha/beta rossmann fold, cell a 96.27
1q0p_A 223 Complement factor B; VON willebrand factor, MAC-1, 96.19
4hqf_A 281 Thrombospondin-related anonymous protein, trap; ma 96.13
4fx5_A 464 VON willebrand factor type A; structural genomics, 95.8
4hqo_A 266 Sporozoite surface protein 2; malaria, gliding mot 95.77
1v7p_C 200 Integrin alpha-2; snake venom, C-type lectin, anta 95.59
3rag_A242 Uncharacterized protein; structural genomics, PSI- 95.56
2odp_A 509 Complement C2; C3/C5 convertase, complement serin 95.55
2x31_A 189 Magnesium-chelatase 60 kDa subunit; ligase, bacter 95.09
3n2n_F 185 Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho 95.08
1pt6_A 213 Integrin alpha-1; cell adhesion; 1.87A {Homo sapie 95.07
2b2x_A 223 Integrin alpha-1; computational design, antibody-a 94.96
1shu_X 182 Anthrax toxin receptor 2; alpha/beta rossmann fold 94.64
1rrk_A 497 Complement factor B; BB, hydrolase; 2.00A {Homo sa 94.38
3hrz_D 741 Complement factor B; serine protease, glycosilated 93.93
3k6s_A 1095 Integrin alpha-X; cell receptor, adhesion molecule 93.17
4b4t_W 268 RPN10, 26S proteasome regulatory subunit RPN10; hy 89.41
1jey_B 565 KU80; double-strand DNA break repair, non-homologo 88.6
2ww8_A 893 RRGA, cell WALL surface anchor family protein; IGG 87.92
2a20_A62 Regulating synaptic membrane exocytosis protein 2; 87.06
2x5n_A 192 SPRPN10, 26S proteasome regulatory subunit RPN10; 86.8
1jey_A 609 KU70; double-strand DNA break repair, non-homologo 86.56
1pft_A50 TFIIB, PFTFIIBN; N-terminal domain, transcription 81.71
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Back     alignment and structure
Probab=100.00  E-value=7.1e-56  Score=429.73  Aligned_cols=199  Identities=33%  Similarity=0.684  Sum_probs=185.0

Q ss_pred             eEEeccCCCCcCCCCCCcceeEecCCCCCCCCeeEeeccccCCCHHhhhhcCCceEEEEecCCCCCCCCCCCceeccCCC
Q 028291            7 ILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGES   86 (211)
Q Consensus         7 ~~~~t~~~~~~~~pp~~~~~~~~~d~gn~~p~~iR~T~~~~P~t~~~~~~~~iPlg~vv~Pf~~~~~~e~~vP~v~~~~~   86 (211)
                      ..|.|..++  ..||++++.|+..|||||+|+|||+|||+||.+++++++++||||++|+||++..+.|.++|+|++++.
T Consensus        19 ~~~~t~~~~--~~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~   96 (770)
T 3efo_B           19 QVYATNTRG--QIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGES   96 (770)
T ss_dssp             SEEETTSSS--CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTT
T ss_pred             CCccCCCCC--CCCCCCCCceeeeecCCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCC
Confidence            478898655  469999999999999999999999999999999999999999999999999998877778999999999


Q ss_pred             CceecCCCCeEEccceEEEeCCceEEEecCCCC--------------CcccCCCCCCCCCCcceEEEechhhh--ccCCC
Q 028291           87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD--------------GRCLDADERPELCRGTVEFAASREFM--MRNVM  150 (211)
Q Consensus        87 ~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~--------------~~~~d~~~rpEL~~~tvE~~~p~~y~--~r~~~  150 (211)
                      +|+||++|||||||||+|+.+|++|+||||+..              |.|.|.++||||.+|+|||++|.||+  .|+|.
T Consensus        97 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~~~~~~p~  176 (770)
T 3efo_B           97 GPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSKPPN  176 (770)
T ss_dssp             CSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGSGGGSCCC
T ss_pred             CCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchHhhccccccccccccccCcccccCceeeecCHHHhccCCCCC
Confidence            999999999999999999999999999999981              44567889999999999999999998  48999


Q ss_pred             CcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCCCCC------cEEEEEEeCCeEEEeecCC
Q 028291          151 PPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINI------FVVGLLKLKIWWMCILYGN  207 (211)
Q Consensus       151 pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp~~~------~~Vg~Itfd~~i~~~~~~~  207 (211)
                      ||+|+||||+|.+++++|++++++++|+++|+.||+++      ++|||||||++|+.+.++.
T Consensus       177 pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~  239 (770)
T 3efo_B          177 PPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKS  239 (770)
T ss_dssp             CCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCT
T ss_pred             CcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCC
Confidence            99999999999999999999999999999999999752      7999999999999998864
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Back     alignment and structure
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Back     alignment and structure
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... Back     alignment and structure
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* Back     alignment and structure
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} Back     alignment and structure
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Back     alignment and structure
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A Back     alignment and structure
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G Back     alignment and structure
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A Back     alignment and structure
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} Back     alignment and structure
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* Back     alignment and structure
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A Back     alignment and structure
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Back     alignment and structure
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} Back     alignment and structure
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 Back     alignment and structure
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A Back     alignment and structure
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 Back     alignment and structure
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* Back     alignment and structure
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Back     alignment and structure
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Back     alignment and structure
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* Back     alignment and structure
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* Back     alignment and structure
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} Back     alignment and structure
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C Back     alignment and structure
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B Back     alignment and structure
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 211
d1pd0a585 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha 2e-21
d1pd0a2177 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast 2e-14
d2qtva575 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar 1e-12
d1pd0a3 252 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar 4e-09
d2qtva3 271 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar 7e-07
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Back     information, alignment and structure

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-finger domain of Sec23/24
family: Zn-finger domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.8 bits (202), Expect = 2e-21
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 14/85 (16%)

Query: 75  EDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LDGRC 122
            DP P+ + G   +VRC  CR Y NPF+ F++ G+ + CNFC                  
Sbjct: 2   IDPPPLNEDG--LIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDP 59

Query: 123 LDADERPELCRGTVEFAASREFMMR 147
               +R E+    +E+ A +E+ +R
Sbjct: 60  KSRYDRNEIKCAVMEYMAPKEYTLR 84
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 Back     information, alignment and structure
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 Back     information, alignment and structure
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query211
d1pd0a585 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.91
d2qtva575 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.8
d1pd0a2177 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.43
d1pd0a3 252 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.39
d2qtva2176 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 98.1
d1mjna_ 179 Integrin CD11a/CD18 (Leukocyte function associated 96.73
d1n3ya_ 189 Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI 96.64
d1mf7a_ 194 Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub 96.48
d1atza_ 184 von Willebrand factor A3 domain, vWA3 {Human (Homo 96.42
d2qtva3 271 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 96.34
d1shux_ 181 Capillary morphogenesis protein 2 domain {Human (H 96.22
d1q0pa_ 209 Complement factor B domain {Human (Homo sapiens) [ 95.96
d1ijba_ 202 von Willebrand factor A1 domain, vWA1 {Human (Homo 95.96
d1jeyb2 236 Ku80 subunit N-terminal domain {Human (Homo sapien 94.83
d1jeya2 220 Ku70 subunit N-terminal domain {Human (Homo sapien 94.71
d1v7pc_ 193 Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId 93.01
d1pt6a_ 192 Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId 92.36
d1y0ja139 Erythroid transcription factor GATA-1 {Mouse (Mus 83.78
d1tyeb2 248 Integrin beta A domain {Human (Homo sapiens) [TaxI 82.92
d1yvra2 174 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c 82.49
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-finger domain of Sec23/24
family: Zn-finger domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5.2e-26  Score=163.05  Aligned_cols=70  Identities=36%  Similarity=0.813  Sum_probs=61.6

Q ss_pred             CCCceeccCCCCceecCCCCeEEccceEEEeCCceEEEecCCCC------------CcccCCCCCCCCCCcceEEEechh
Q 028291           76 DPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD------------GRCLDADERPELCRGTVEFAASRE  143 (211)
Q Consensus        76 ~~vP~v~~~~~~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~------------~~~~d~~~rpEL~~~tvE~~~p~~  143 (211)
                      ++||+++  ...|+||++|+||||||++|+.+|++|+||||++.            +.+.+..+||||++|||||++|++
T Consensus         3 ~pvPv~~--~~~i~RC~~C~ayiNP~~~~~~~g~~w~C~~C~~~N~~p~~y~~~~~~~~~~~~~rPEL~~~tvEy~ap~~   80 (85)
T d1pd0a5           3 DPPPLNE--DGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKE   80 (85)
T ss_dssp             SCCCBCC--SCCCCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCGGGGC-----CCCGGGSHHHHCSEEEEECCGG
T ss_pred             CCCcccC--CCCCccccCCcCEECCceEEeCCCCEEECCCCCcccCCCHHHhccccCCccccccCcccccceEEEECChh
Confidence            4699988  45899999999999999999999999999999982            234567789999999999999999


Q ss_pred             hhcc
Q 028291          144 FMMR  147 (211)
Q Consensus       144 y~~r  147 (211)
                      |+.|
T Consensus        81 Y~~r   84 (85)
T d1pd0a5          81 YTLR   84 (85)
T ss_dssp             GCSS
T ss_pred             hhcc
Confidence            9876
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure