Citrus Sinensis ID: 028333

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEcccHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MLTTPFKALAETceadnsffnmPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIesyapslsyapvgsripedevivdpkKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISeregeysgsteaYGAIADCYTELGDLERAARFYDKYISRLESD
Flexible Loop (DISEMBL)
MLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIesyapslsyapvgsripedevivdpKKEELLSRLKtgknflrnQDLEKAFTEFKAALELAqnvkdpieekkaarglgaslqrqgKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Low Complexity Region (SEG)
MLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Disordered region (IsUnstruct)
*******ALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALR****I**************************************NFLRNQDLEKAFTEFKAALELA*************************YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI******
Disordered Region (DISOPRED)
*******ALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPE******PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE**
Disordered Region (DISEMBL)
MLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Disordered Region (DISPRO)
*LTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE**
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRxxxxxxxxxxxxxxxxxxxxxxxxESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRxxxxxxxxxxxxxxxxxxxxxKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q940U6	316	Protein FLUORESCENT IN BL	no	no	0.995	0.661	0.795	7e-95
Q96AY4	2481	Tetratricopeptide repeat	yes	no	0.423	0.035	0.340	9e-09
Q80XJ3	1691	Tetratricopeptide repeat	yes	no	0.423	0.052	0.340	1e-08
P81274	684	G-protein-signaling modul	no	no	0.442	0.135	0.290	0.0006

>sp|Q940U6|FLU_ARATH Protein FLUORESCENT IN BLUE LIGHT, chloroplastic OS=Arabidopsis thaliana GN=FLU PE=1 SV=1

 Score =  346 bits (887), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 167/210 (79%), Positives = 192/210 (91%), Gaps = 1/210 (0%)

Query: 2   LTTPFKALA-ETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAA 60
           + TP +ALA E CE ++S F+MP+LL VALIGATVGGLLARQR+GELQR+NEQLRQINAA
Sbjct: 107 MATPLEALAAEICEPESSMFSMPILLLVALIGATVGGLLARQRKGELQRLNEQLRQINAA 166

Query: 61  LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEF 120
           LRRQAKIESYAPSLSYAPVG+RIP+ E+IV+PKK+EL+S+LKTGK FLRNQ+ EKA+TEF
Sbjct: 167 LRRQAKIESYAPSLSYAPVGARIPDSEIIVEPKKQELISKLKTGKTFLRNQEPEKAYTEF 226

Query: 121 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 180
           K ALELAQ++KDP EEKKAARGLGASLQRQGKYREAI+YHSMVL IS+RE E SG TEAY
Sbjct: 227 KIALELAQSLKDPTEEKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESEDSGITEAY 286

Query: 181 GAIADCYTELGDLERAARFYDKYISRLESD 210
           GAIADCYTELGDLE+A +FYD YI+RLE+D
Sbjct: 287 GAIADCYTELGDLEKAGKFYDTYIARLETD 316

Negative regulator of tetrapyrrole biosynthesis (including chlorophyll) in chloroplasts, probably via HEMA1 repression. Inhibits especially the magnesium ion Mg(2+) branch of tetrapyrrole biosynthesis, but independently of heme.
Arabidopsis thaliana (taxid: 3702)

>sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4

 Score = 60.5 bits (145), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%)

Query: 112  DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
            + E+A +  +  L +A+++KD   E  AA GLG   Q+ G+Y  A++YH + LQI+E   
Sbjct: 972  NYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETN 1031

Query: 172  EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
              +    AYG +   Y  LG  ERA  + ++++S
Sbjct: 1032 NPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLS 1065

Homo sapiens (taxid: 9606)

>sp|Q80XJ3|TTC28_MOUSE Tetratricopeptide repeat protein 28 OS=Mus musculus GN=Ttc28 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 53/94 (56%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           + E+A +  +  L +A+++KD   E  AA GLG   Q+ G+Y  A++YH + LQI+E   
Sbjct: 207 NYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETD 266

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
             +    AYG +   Y  LG  ERA  + ++++S
Sbjct: 267 NPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLS 300

Mus musculus (taxid: 10090)

>sp|P81274|GPSM2_HUMAN G-protein-signaling modulator 2 OS=Homo sapiens GN=GPSM2 PE=1 SV=3

 Score = 44.3 bits (103), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 47/93 (50%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   L I++   
Sbjct: 257 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 316

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
           +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 317 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 349

Plays an important role in spindle pole orientation. Interacts and contributes to the functional activity of G(i) alpha proteins. Acts to stabilize the apical complex during neuroblast divisions.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
224119612	229	predicted protein [Populus trichocarpa]	1.0	0.917	0.857	1e-101
147797982	232	hypothetical protein VITISV_027349 [Viti	1.0	0.905	0.852	1e-100
297742973	332	unnamed protein product [Vitis vinifera]	1.0	0.632	0.852	1e-100
255576615	332	FLU, putative [Ricinus communis] gi|2235	1.0	0.632	0.842	8e-99
449453383	297	PREDICTED: protein FLUORESCENT IN BLUE L	0.995	0.703	0.832	1e-97
357514129	300	Tetratricopeptide repeat protein [Medica	1.0	0.7	0.810	1e-96
388506112	300	unknown [Lotus japonicus]	1.0	0.7	0.815	3e-96
388522423	300	unknown [Medicago truncatula]	1.0	0.7	0.810	4e-96
358248692	297	uncharacterized protein LOC100818487 [Gl	1.0	0.707	0.824	8e-95
297834262	316	hypothetical protein ARALYDRAFT_478824 [	0.995	0.661	0.8	7e-94

>gi|224119612|ref|XP_002331203.1| predicted protein [Populus trichocarpa] gi|222873324|gb|EEF10455.1| predicted protein [Populus trichocarpa]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/210 (85%), Positives = 198/210 (94%)

Query: 1   MLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAA 60
           M TTPF+ALAETCEAD+S FNMPLLLFVAL+GATVGGLLARQR+GELQR+NEQLRQINAA
Sbjct: 20  MWTTPFEALAETCEADSSIFNMPLLLFVALVGATVGGLLARQRKGELQRLNEQLRQINAA 79

Query: 61  LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEF 120
           LRRQAKIESYAP+LSYAPVGSRI E EVIVDP+KE+L+SRLK GKNFLRNQD EKAF EF
Sbjct: 80  LRRQAKIESYAPTLSYAPVGSRILESEVIVDPRKEDLISRLKVGKNFLRNQDPEKAFVEF 139

Query: 121 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 180
           K+ALELAQN+KDP EEKKA RGLGASLQRQGK +EAIKYHSMVL IS+REGE SG+TEAY
Sbjct: 140 KSALELAQNLKDPTEEKKAVRGLGASLQRQGKLQEAIKYHSMVLAISKREGEESGNTEAY 199

Query: 181 GAIADCYTELGDLERAARFYDKYISRLESD 210
           GAIADCYTELGDLE+AA+FYDKYI+RLE+D
Sbjct: 200 GAIADCYTELGDLEQAAKFYDKYIARLETD 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797982|emb|CAN65010.1| hypothetical protein VITISV_027349 [Vitis vinifera]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/210 (85%), Positives = 197/210 (93%)

Query: 1   MLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAA 60
           +LT PF+ALAETCEA++SFFNMPLL FVALIGATVGGLLARQRRGELQRVNEQLRQINAA
Sbjct: 23  LLTIPFEALAETCEAESSFFNMPLLSFVALIGATVGGLLARQRRGELQRVNEQLRQINAA 82

Query: 61  LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEF 120
           LRRQAKIESYAPSLSYAPVGS+IPE+EVI+DPKKEEL+S LK GKNFLRNQ+ EKAF EF
Sbjct: 83  LRRQAKIESYAPSLSYAPVGSKIPENEVIIDPKKEELISCLKAGKNFLRNQNPEKAFMEF 142

Query: 121 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 180
           K ALELA+ +KDP EEKKAARGLGASLQRQGKYR+AIKYHS VL+IS+REGE SG+TEAY
Sbjct: 143 KTALELARTLKDPTEEKKAARGLGASLQRQGKYRDAIKYHSTVLEISKREGENSGNTEAY 202

Query: 181 GAIADCYTELGDLERAARFYDKYISRLESD 210
           GAIADCYTELGDLERA +FYD+YI+RLE D
Sbjct: 203 GAIADCYTELGDLERAGKFYDQYIARLEKD 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742973|emb|CBI35840.3| unnamed protein product [Vitis vinifera]

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/210 (85%), Positives = 197/210 (93%)

Query: 1   MLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAA 60
           +LT PF+ALAETCEA++SFFNMPLL FVALIGATVGGLLARQRRGELQRVNEQLRQINAA
Sbjct: 123 LLTIPFEALAETCEAESSFFNMPLLSFVALIGATVGGLLARQRRGELQRVNEQLRQINAA 182

Query: 61  LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEF 120
           LRRQAKIESYAPSLSYAPVGS+IPE+EVI+DPKKEEL+S LK GKNFLRNQ+ EKAF EF
Sbjct: 183 LRRQAKIESYAPSLSYAPVGSKIPENEVIIDPKKEELISCLKAGKNFLRNQNPEKAFMEF 242

Query: 121 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 180
           K ALELA+ +KDP EEKKAARGLGASLQRQGKYR+AIKYHS VL+IS+REGE SG+TEAY
Sbjct: 243 KTALELARTLKDPTEEKKAARGLGASLQRQGKYRDAIKYHSTVLEISKREGENSGNTEAY 302

Query: 181 GAIADCYTELGDLERAARFYDKYISRLESD 210
           GAIADCYTELGDLERA +FYD+YI+RLE D
Sbjct: 303 GAIADCYTELGDLERAGKFYDQYIARLEKD 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576615|ref|XP_002529198.1| FLU, putative [Ricinus communis] gi|223531376|gb|EEF33212.1| FLU, putative [Ricinus communis]

 Score =  365 bits (936), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 177/210 (84%), Positives = 197/210 (93%)

Query: 1   MLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAA 60
           M T PF+ALAET EADNSFFNMP+LLFVAL+GATVGGLLARQRRGELQ++NEQLRQINAA
Sbjct: 123 MWTAPFEALAETREADNSFFNMPVLLFVALVGATVGGLLARQRRGELQKLNEQLRQINAA 182

Query: 61  LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEF 120
           LRRQAKIESYAP+LSYAPVGSRI E+EVIVDP+K+EL+SRLK+GK FLRNQD EKAF EF
Sbjct: 183 LRRQAKIESYAPTLSYAPVGSRIAENEVIVDPRKQELISRLKSGKKFLRNQDPEKAFEEF 242

Query: 121 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 180
           KAALELA+++KDP+EEKKAARGLGASLQRQGKYREAI YHSMVL IS++EGE SG+TEAY
Sbjct: 243 KAALELARSLKDPMEEKKAARGLGASLQRQGKYREAINYHSMVLAISQKEGEESGNTEAY 302

Query: 181 GAIADCYTELGDLERAARFYDKYISRLESD 210
           GAIADCYTELGDLERA +FYD YI+RLE D
Sbjct: 303 GAIADCYTELGDLERAGKFYDNYIARLEKD 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453383|ref|XP_004144437.1| PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like [Cucumis sativus] gi|449517661|ref|XP_004165863.1| PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic-like [Cucumis sativus]

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 174/209 (83%), Positives = 195/209 (93%)

Query: 2   LTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAAL 61
            + P KA+AETCEA++S FNMP+LL VAL+GATVGGLLARQRRGEL+R+NEQLRQINAAL
Sbjct: 89  FSVPLKAMAETCEAESSAFNMPILLAVALVGATVGGLLARQRRGELKRLNEQLRQINAAL 148

Query: 62  RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFK 121
           RRQAKIESYAP+LSYAPVG RI E+EVIVDP+KE+L+SRLK+GKNFLRNQD EKAF EFK
Sbjct: 149 RRQAKIESYAPTLSYAPVGGRILENEVIVDPRKEDLISRLKSGKNFLRNQDPEKAFVEFK 208

Query: 122 AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 181
            ALELAQ ++DPIEEKKAARGLGASLQRQGKYREAIKYHSMVL ISEREGE SG+TEA+G
Sbjct: 209 TALELAQGLQDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLAISEREGEQSGNTEAFG 268

Query: 182 AIADCYTELGDLERAARFYDKYISRLESD 210
           AIADCYTELGDLE+AA FYDKYI+RLE+D
Sbjct: 269 AIADCYTELGDLEKAAYFYDKYIARLETD 297

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514129|ref|XP_003627353.1| Tetratricopeptide repeat protein [Medicago truncatula] gi|355521375|gb|AET01829.1| Tetratricopeptide repeat protein [Medicago truncatula]

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 171/211 (81%), Positives = 194/211 (91%), Gaps = 1/211 (0%)

Query: 1   MLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAA 60
           M + P KALAETCEADNS FNMP+LL VALIGATVGGL+ARQR+GELQR+NEQL QINAA
Sbjct: 90  MFSMPCKALAETCEADNSMFNMPILLAVALIGATVGGLVARQRKGELQRLNEQLLQINAA 149

Query: 61  LRRQAKIESYAPSLSYAPVGS-RIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTE 119
           LR+QAKIESYAP+LSYAP+G  RI E E+IVDPKK+EL+S+LK+GKNFLRNQ  ++AFTE
Sbjct: 150 LRKQAKIESYAPTLSYAPIGGGRIAESEIIVDPKKQELISKLKSGKNFLRNQQPDRAFTE 209

Query: 120 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179
           FK ALELAQN+KDPIEEKKAARGLGASLQRQGKYR+A+KYHSMVL ISEREGE SGSTEA
Sbjct: 210 FKTALELAQNIKDPIEEKKAARGLGASLQRQGKYRDAVKYHSMVLSISEREGEDSGSTEA 269

Query: 180 YGAIADCYTELGDLERAARFYDKYISRLESD 210
           +GAIADCYTELGDLE+A ++YDKYI+RLE D
Sbjct: 270 FGAIADCYTELGDLEKAGQYYDKYIARLEKD 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506112|gb|AFK41122.1| unknown [Lotus japonicus]

 Score =  356 bits (914), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 172/211 (81%), Positives = 194/211 (91%), Gaps = 1/211 (0%)

Query: 1   MLTTPFKALAETCEA-DNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINA 59
           M T P KALAETCEA  NSFFNMP+LL VALIGATVGGL+ARQR+GELQRVNEQL QIN 
Sbjct: 90  MFTMPSKALAETCEAAGNSFFNMPILLAVALIGATVGGLVARQRKGELQRVNEQLLQINT 149

Query: 60  ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTE 119
           ALR+QAKIESYAPSLSYAP+G+RIP++E+IVDPKK+EL+S+LK+GKNFLRNQ L+KAFTE
Sbjct: 150 ALRKQAKIESYAPSLSYAPIGARIPDNEIIVDPKKQELISKLKSGKNFLRNQQLDKAFTE 209

Query: 120 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179
           FK ALELAQN+KDPIEEKKAARGLGASLQRQGKYR+AIKYHSMVL IS REGE SG++EA
Sbjct: 210 FKIALELAQNLKDPIEEKKAARGLGASLQRQGKYRDAIKYHSMVLAISGREGEDSGNSEA 269

Query: 180 YGAIADCYTELGDLERAARFYDKYISRLESD 210
           +GAIADCYTELGDLE+A  +YDKYI+ LE D
Sbjct: 270 FGAIADCYTELGDLEKAGEYYDKYIAMLEKD 300

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522423|gb|AFK49273.1| unknown [Medicago truncatula]

 Score =  356 bits (913), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 171/211 (81%), Positives = 193/211 (91%), Gaps = 1/211 (0%)

Query: 1   MLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAA 60
           M + P KALAETCEADNS FNMP+LL VALIGATVGGL ARQR+GELQR+NEQL QINAA
Sbjct: 90  MFSMPCKALAETCEADNSMFNMPILLAVALIGATVGGLAARQRKGELQRLNEQLLQINAA 149

Query: 61  LRRQAKIESYAPSLSYAPVGS-RIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTE 119
           LR+QAKIESYAP+LSYAP+G  RI E E+IVDPKK+EL+S+LK+GKNFLRNQ  ++AFTE
Sbjct: 150 LRKQAKIESYAPTLSYAPIGGGRIAESEIIVDPKKQELISKLKSGKNFLRNQQPDRAFTE 209

Query: 120 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179
           FK ALELAQN+KDPIEEKKAARGLGASLQRQGKYR+A+KYHSMVL ISEREGE SGSTEA
Sbjct: 210 FKTALELAQNIKDPIEEKKAARGLGASLQRQGKYRDAVKYHSMVLSISEREGEDSGSTEA 269

Query: 180 YGAIADCYTELGDLERAARFYDKYISRLESD 210
           +GAIADCYTELGDLE+A ++YDKYI+RLE D
Sbjct: 270 FGAIADCYTELGDLEKAGQYYDKYIARLEKD 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248692|ref|NP_001239924.1| uncharacterized protein LOC100818487 [Glycine max] gi|255645496|gb|ACU23243.1| unknown [Glycine max]

 Score =  352 bits (902), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 174/211 (82%), Positives = 192/211 (90%), Gaps = 1/211 (0%)

Query: 1   MLTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAA 60
           M + P  ALAETCEADNS FNMP+LL VALIGATVGGLLARQRR ELQRVNEQL QINAA
Sbjct: 87  MFSMPNTALAETCEADNSVFNMPILLAVALIGATVGGLLARQRRNELQRVNEQLIQINAA 146

Query: 61  LRRQAKIESYAPSLSYAPVGS-RIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTE 119
           LR+QAKIESYAPSLSYAP+G  RI ++E+IVDPKK+EL+S+LK GKNFLRNQ  +KAFTE
Sbjct: 147 LRKQAKIESYAPSLSYAPIGGGRILDNEIIVDPKKQELISKLKNGKNFLRNQQPDKAFTE 206

Query: 120 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179
           FK ALELAQN+KDPIEEKKAARGLGASLQRQGKYR+AIKYHSMVL ISEREGE SGSTEA
Sbjct: 207 FKNALELAQNLKDPIEEKKAARGLGASLQRQGKYRDAIKYHSMVLGISEREGEDSGSTEA 266

Query: 180 YGAIADCYTELGDLERAARFYDKYISRLESD 210
           +GAIADCYTELG+LE+A +FYDKYI+RLE D
Sbjct: 267 FGAIADCYTELGELEKAGQFYDKYIARLEKD 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834262|ref|XP_002885013.1| hypothetical protein ARALYDRAFT_478824 [Arabidopsis lyrata subsp. lyrata] gi|297330853|gb|EFH61272.1| hypothetical protein ARALYDRAFT_478824 [Arabidopsis lyrata subsp. lyrata]

 Score =  348 bits (893), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 168/210 (80%), Positives = 193/210 (91%), Gaps = 1/210 (0%)

Query: 2   LTTPFKALA-ETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAA 60
           + TPF+ALA E CE ++S F+MP+LL VALIGATVGGL+ARQR+GELQR+NEQLRQINAA
Sbjct: 107 MATPFEALAAEICEPESSMFSMPILLLVALIGATVGGLVARQRKGELQRLNEQLRQINAA 166

Query: 61  LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEF 120
           LRRQAKIESYAPSLSYAPVG+RIPE E+IV+PKK+EL+S+LKTGK FLRNQ+ EKA+ EF
Sbjct: 167 LRRQAKIESYAPSLSYAPVGARIPESEIIVEPKKQELISKLKTGKTFLRNQEPEKAYAEF 226

Query: 121 KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 180
           K ALELAQ+++DPIEEKKAARGLGASLQRQGKYREAI+YHSMVL IS+RE E SG TEAY
Sbjct: 227 KTALELAQSLRDPIEEKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESEDSGITEAY 286

Query: 181 GAIADCYTELGDLERAARFYDKYISRLESD 210
           GAIADCYTELGDLE+A +FYD YISRLE+D
Sbjct: 287 GAIADCYTELGDLEKAGKFYDTYISRLETD 316

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
MGI|MGI:2140873	1691	Ttc28 "tetratricopeptide repea	0.438	0.054	0.347	1.9e-07
UNIPROTKB|K7ZRV2	2481	TPRBK "TPR repeat-containing b	0.438	0.037	0.347	2e-07
UNIPROTKB|E1BS79	588	GPSM1 "Uncharacterized protein	0.495	0.176	0.292	0.00019
UNIPROTKB|E1BR28	663	GPSM2 "Uncharacterized protein	0.509	0.161	0.293	0.0003
TAIR|locus:2089353	475	AT3G16760 [Arabidopsis thalian	0.276	0.122	0.379	0.00032
ZFIN|ZDB-GENE-041010-223	662	gpsm2l "G-protein signalling m	0.433	0.137	0.318	0.00089
UNIPROTKB|E2QSP1	682	GPSM2 "Uncharacterized protein	0.509	0.156	0.293	0.00092
UNIPROTKB|P81274	684	GPSM2 "G-protein-signaling mod	0.509	0.156	0.293	0.00092
UNIPROTKB|F6V2B9	720	GPSM2 "Uncharacterized protein	0.509	0.148	0.293	0.00099

MGI|MGI:2140873 Ttc28 "tetratricopeptide repeat domain 28" [Mus musculus (taxid:10090)]

 Score = 145 (56.1 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 32/92 (34%), Positives = 52/92 (56%)

Query:   114 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 173
             E+A +  +  L +A+++KD   E  AA GLG   Q+ G+Y  A++YH + LQI+E     
Sbjct:   209 EQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETDNP 268

Query:   174 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
             +    AYG +   Y  LG  ERA  + ++++S
Sbjct:   269 TCQGRAYGNLGLTYESLGTFERAVVYQEQHLS 300

GO:0003674 "molecular_function" evidence=ND

GO:0005813 "centrosome" evidence=ISO

GO:0007346 "regulation of mitotic cell cycle" evidence=ISO

GO:0030496 "midbody" evidence=ISO

GO:0072686 "mitotic spindle" evidence=ISO

GO:0097431 "mitotic spindle pole" evidence=ISO

GO:1990023 "mitotic spindle midzone" evidence=ISO

UNIPROTKB|K7ZRV2 TPRBK "TPR repeat-containing big gene cloned at Keio" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 32/92 (34%), Positives = 52/92 (56%)

Query:   114 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 173
             E+A +  +  L +A+++KD   E  AA GLG   Q+ G+Y  A++YH + LQI+E     
Sbjct:   974 EQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETNNP 1033

Query:   174 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
             +    AYG +   Y  LG  ERA  + ++++S
Sbjct:  1034 TCQGRAYGNLGLTYESLGTFERAVVYQEQHLS 1065

GO:0007067 "mitosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0030496 "midbody" evidence=IEA

UNIPROTKB|E1BS79 GPSM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 117 (46.2 bits), Expect = 0.00019, P = 0.00019
 Identities = 31/106 (29%), Positives = 51/106 (48%)

Query:    99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK 158
             S L     FL   D+   +  +K  L+L++ +KD   E +A   LG +      Y +AI+
Sbjct:   227 SNLGNAHIFLGRFDISAEY--YKKTLQLSRQLKDQAVEAQACYSLGNTYTLLQDYEKAIE 284

Query:   159 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
             YH   L I++  G+  G   A  ++ + Y  LG  E+A  F  K++
Sbjct:   285 YHLKHLVIAQELGDRVGEGRACWSLGNAYVSLGSHEQALHFARKHL 330

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|E1BR28 GPSM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 116 (45.9 bits), Expect = 0.00030, P = 0.00030
 Identities = 32/109 (29%), Positives = 54/109 (49%)

Query:   104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
             G  ++   + E A   +K  L+LA+ +KD   E +A   LG +      Y +AI YH   
Sbjct:   251 GNAYIFLGEFETASEYYKRTLQLARQLKDRAVEAQACYSLGNTYTLLQDYEKAIDYHLKH 310

Query:   164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY--ISRLESD 210
             L I++   +  G   A  ++ + YT LG+ ++A  F +++  ISR   D
Sbjct:   311 LVIAQELNDKIGEGRACWSLGNAYTALGNHDQAMHFAERHLEISREVGD 359

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0060487 "lung epithelial cell differentiation" evidence=IEA

TAIR|locus:2089353 AT3G16760 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 0.00032, P = 0.00032
 Identities = 22/58 (37%), Positives = 36/58 (62%)

Query:   139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA 196
             +A+  G   QRQG+Y +AIK+ S  + + +R G+ +GS E     A CY E+G+ ++A
Sbjct:   355 SAKNKGIDNQRQGQYADAIKWLSWAVILMDRAGDEAGSAEVLSTRASCYKEVGEYKKA 412

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-041010-223 gpsm2l "G-protein signalling modulator 2, like" [Danio rerio (taxid:7955)]

 Score = 112 (44.5 bits), Expect = 0.00089, P = 0.00089
 Identities = 29/91 (31%), Positives = 46/91 (50%)

Query:   114 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 173
             E A   +K  L+LA+ +KD   E +A   LG +      Y  AI YH   L I++   + 
Sbjct:   239 EVAAEHYKRTLQLARQLKDRAVEAQACYSLGNTYTLLQDYERAIDYHLKHLIIAQDLKDR 298

Query:   174 SGSTEAYGAIADCYTELGDLERAARFYDKYI 204
              G   A  ++ + YT LG+ E+A  F +K++
Sbjct:   299 IGEGRACWSLGNAYTALGNHEQAMSFAEKHL 329

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0030695 "GTPase regulator activity" evidence=IEA

UNIPROTKB|E2QSP1 GPSM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 112 (44.5 bits), Expect = 0.00092, P = 0.00092
 Identities = 32/109 (29%), Positives = 53/109 (48%)

Query:   104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
             G  ++   + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   
Sbjct:   250 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 309

Query:   164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY--ISRLESD 210
             L I++   +  G   A  ++ + YT LG+ ++A  F +K+  ISR   D
Sbjct:   310 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 358

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

UNIPROTKB|P81274 GPSM2 "G-protein-signaling modulator 2" [Homo sapiens (taxid:9606)]

 Score = 112 (44.5 bits), Expect = 0.00092, P = 0.00092
 Identities = 32/109 (29%), Positives = 53/109 (48%)

Query:   104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
             G  ++   + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   
Sbjct:   249 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 308

Query:   164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY--ISRLESD 210
             L I++   +  G   A  ++ + YT LG+ ++A  F +K+  ISR   D
Sbjct:   309 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 357

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0060487 "lung epithelial cell differentiation" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F6V2B9 GPSM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 112 (44.5 bits), Expect = 0.00099, P = 0.00099
 Identities = 32/109 (29%), Positives = 53/109 (48%)

Query:   104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
             G  ++   + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   
Sbjct:   249 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 308

Query:   164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY--ISRLESD 210
             L I++   +  G   A  ++ + YT LG+ ++A  F +K+  ISR   D
Sbjct:   309 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 357


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      210       210   0.00080  112 3  11 22  0.39    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  556 (59 KB)
  Total size of DFA:  139 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.98u 0.08s 22.06t   Elapsed:  00:00:01
  Total cpu time:  21.98u 0.08s 22.06t   Elapsed:  00:00:01
  Start:  Fri May 10 14:34:34 2013   End:  Fri May 10 14:34:35 2013

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005092 "GDP-dissociation inhibitor activity" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.158.86.1 hypothetical protein (229 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.003
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.003

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 48.5 bits (116), Expect = 4e-08
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 133 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELG 191
             +   A   L   L+R G Y EA++     L+++   GE    T  A   +A  Y  LG
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 192 DLERAARFYDKYISRLES 209
           D + A  + +K ++  E+
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 12/102 (11%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G  + +  D ++A   ++ ALEL  +  D      A   L A+  + GKY EA++ +   
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELDPDNAD------AYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           L++         + +AY  +   Y +LG  E A   Y+K + 
Sbjct: 61  LELDPD------NAKAYYNLGLAYYKLGKYEEALEAYEKALE 96

Length = 100

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSM 162
                R  D ++A    + ALELA+ +  D  E  +A   L       G Y EA++Y   
Sbjct: 12  ALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEK 71

Query: 163 VLQISER 169
            L + E 
Sbjct: 72  ALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 138 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 197
           +A   LG    + G Y EA++Y+   L++         + +AY  +A  Y +LG  E A 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALEL------DPDNADAYYNLAAAYYKLGKYEEAL 54

Query: 198 RFYDKYIS 205
             Y+K + 
Sbjct: 55  EDYEKALE 62

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.51
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.5
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.46
PRK15359	144	type III secretion system chaperone protein SscB;	99.45
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.44
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.43
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.42
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.39
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.39
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.37
KOG0553	304	consensus TPR repeat-containing protein [General f	99.37
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.35
PRK11189	296	lipoprotein NlpI; Provisional	99.35
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.3
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.3
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.29
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.27
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.26
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.26
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.24
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.22
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.22
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.22
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.21
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.21
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.19
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.19
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.19
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.19
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.19
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.17
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.14
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.11
PRK10803	263	tol-pal system protein YbgF; Provisional	99.1
KOG1126	638	consensus DNA-binding cell division cycle control	99.09
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.08
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.08
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.07
KOG0553	304	consensus TPR repeat-containing protein [General f	99.05
KOG1126	638	consensus DNA-binding cell division cycle control	99.05
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.05
KOG1125	579	consensus TPR repeat-containing protein [General f	99.01
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.01
PRK12370	553	invasion protein regulator; Provisional	99.01
PRK12370	553	invasion protein regulator; Provisional	99.0
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.98
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.96
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.91
PF12688	120	TPR_5: Tetratrico peptide repeat	98.91
KOG2003	840	consensus TPR repeat-containing protein [General f	98.91
PRK15331	165	chaperone protein SicA; Provisional	98.91
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.9
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.9
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.89
PRK11189	296	lipoprotein NlpI; Provisional	98.87
PRK15359	144	type III secretion system chaperone protein SscB;	98.86
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.85
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.82
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.79
KOG4555	175	consensus TPR repeat-containing protein [Function	98.79
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.78
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.78
KOG4234	271	consensus TPR repeat-containing protein [General f	98.77
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.77
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.77
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.75
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.75
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.75
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.74
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.73
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.71
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.71
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.7
KOG1586	288	consensus Protein required for fusion of vesicles	98.7
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.69
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.68
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.68
PF13512	142	TPR_18: Tetratricopeptide repeat	98.65
KOG1129	478	consensus TPR repeat-containing protein [General f	98.63
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.63
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.62
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.61
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.6
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.59
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.58
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.58
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.57
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.56
KOG1129	478	consensus TPR repeat-containing protein [General f	98.56
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.55
PF13371	73	TPR_9: Tetratricopeptide repeat	98.55
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.54
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.54
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.54
PLN02789	320	farnesyltranstransferase	98.53
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.51
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.49
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.47
PRK04841	903	transcriptional regulator MalT; Provisional	98.47
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.46
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.46
KOG1125	579	consensus TPR repeat-containing protein [General f	98.46
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.45
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.45
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.41
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.4
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.4
PF13371	73	TPR_9: Tetratricopeptide repeat	98.39
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.39
KOG2076	895	consensus RNA polymerase III transcription factor	98.37
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.37
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.36
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.35
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.34
KOG2076	895	consensus RNA polymerase III transcription factor	98.34
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.33
KOG1585	308	consensus Protein required for fusion of vesicles	98.33
PRK04841	903	transcriptional regulator MalT; Provisional	98.31
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	98.31
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.31
KOG2003	840	consensus TPR repeat-containing protein [General f	98.3
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.28
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.27
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.26
KOG1586	288	consensus Protein required for fusion of vesicles	98.25
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.24
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.23
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	98.23
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.23
PRK14574	822	hmsH outer membrane protein; Provisional	98.2
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.18
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.16
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.16
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.14
PRK14574	822	hmsH outer membrane protein; Provisional	98.14
PLN02789	320	farnesyltranstransferase	98.14
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.12
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	98.08
PF12688	120	TPR_5: Tetratrico peptide repeat	98.07
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.06
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.06
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.05
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.05
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.05
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.02
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.01
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.0
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.99
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.99
PRK10803	263	tol-pal system protein YbgF; Provisional	97.98
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.95
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.94
KOG4234	271	consensus TPR repeat-containing protein [General f	97.93
KOG4555	175	consensus TPR repeat-containing protein [Function	97.93
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.93
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.93
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.92
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.91
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.91
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.86
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.85
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.83
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.8
PF13431	34	TPR_17: Tetratricopeptide repeat	97.73
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.71
PRK15331	165	chaperone protein SicA; Provisional	97.71
PF13428	44	TPR_14: Tetratricopeptide repeat	97.68
PRK11906	458	transcriptional regulator; Provisional	97.67
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.65
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.63
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.63
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.61
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.61
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.59
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.58
KOG2471	696	consensus TPR repeat-containing protein [General f	97.58
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.56
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	97.55
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.54
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.52
KOG2471	696	consensus TPR repeat-containing protein [General f	97.5
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.49
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.47
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.46
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.46
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.46
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.45
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.45
PF13512	142	TPR_18: Tetratricopeptide repeat	97.43
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.42
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.41
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.39
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.37
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.34
PF13428	44	TPR_14: Tetratricopeptide repeat	97.33
PF13431	34	TPR_17: Tetratricopeptide repeat	97.32
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.3
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	97.3
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.29
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.28
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.28
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.22
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.19
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.18
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.17
KOG1585	308	consensus Protein required for fusion of vesicles	97.15
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.09
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.05
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.05
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.99
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	96.95
PLN03218	1060	maturation of RBCL 1; Provisional	96.88
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.84
PRK11906	458	transcriptional regulator; Provisional	96.84
PLN03218	1060	maturation of RBCL 1; Provisional	96.76
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.75
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.74
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.72
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.72
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.72
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.7
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.68
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.68
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.65
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.62
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.57
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.51
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.48
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.48
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	96.44
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.43
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.43
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.41
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.4
PLN03077	857	Protein ECB2; Provisional	96.39
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	96.3
KOG2300	629	consensus Uncharacterized conserved protein [Funct	96.29
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.17
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.15
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.14
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.0
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.97
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.97
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.96
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.89
PRK10941	269	hypothetical protein; Provisional	95.87
COG5187	412	RPN7 26S proteasome regulatory complex component,	95.85
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.78
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.73
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.73
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.64
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.61
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.57
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.45
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.44
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.44
KOG0687	393	consensus 26S proteasome regulatory complex, subun	95.44
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.32
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.25
KOG2581	493	consensus 26S proteasome regulatory complex, subun	95.22
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.19
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	95.15
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.13
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	95.12
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.1
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.1
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.08
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.0
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	94.98
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.95
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.77
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.55
KOG1310	758	consensus WD40 repeat protein [General function pr	94.45
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.44
KOG2047	835	consensus mRNA splicing factor [RNA processing and	94.43
KOG3364	149	consensus Membrane protein involved in organellar	94.43
PLN03077	857	Protein ECB2; Provisional	94.4
KOG3616	1636	consensus Selective LIM binding factor [Transcript	94.36
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.19
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.17
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	94.15
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.13
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.13
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.1
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.07
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	94.01
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	93.94
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.91
KOG1463	411	consensus 26S proteasome regulatory complex, subun	93.9
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	93.78
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	93.59
KOG3783	546	consensus Uncharacterized conserved protein [Funct	93.48
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.47
KOG2581	493	consensus 26S proteasome regulatory complex, subun	93.43
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	93.42
COG5187	412	RPN7 26S proteasome regulatory complex component,	93.41
KOG3616	1636	consensus Selective LIM binding factor [Transcript	93.39
COG5159	421	RPN6 26S proteasome regulatory complex component [	93.12
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.98
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	92.93
KOG1915	677	consensus Cell cycle control protein (crooked neck	92.7
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.67
KOG3364	149	consensus Membrane protein involved in organellar	92.37
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.23
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	92.19
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	92.19
KOG2908	380	consensus 26S proteasome regulatory complex, subun	92.14
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	91.99
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	91.92
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	91.88
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.88
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	91.85
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	91.77
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.72
KOG1915	677	consensus Cell cycle control protein (crooked neck	91.57
KOG1463	411	consensus 26S proteasome regulatory complex, subun	91.52
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	91.46
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.43
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	91.32
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.16
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.04
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	91.03
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	90.86
PRK10941	269	hypothetical protein; Provisional	90.73
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	90.58
KOG3783	546	consensus Uncharacterized conserved protein [Funct	90.57
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	90.35
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.27
COG5159	421	RPN6 26S proteasome regulatory complex component [	90.06
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	90.01
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	89.81
KOG2047	835	consensus mRNA splicing factor [RNA processing and	89.71
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	89.62
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.36
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	89.13
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	89.07
PF04212	69	MIT: MIT (microtubule interacting and transport) d	88.16
COG2178	204	Predicted RNA-binding protein of the translin fami	88.1
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.91
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	87.86
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	87.53
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	87.48
COG3947	361	Response regulator containing CheY-like receiver a	86.8
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	86.77
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	86.54
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	86.32
KOG0687	393	consensus 26S proteasome regulatory complex, subun	86.23
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	86.15
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.11
KOG4507	886	consensus Uncharacterized conserved protein, conta	86.09
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	86.07
PF04212	69	MIT: MIT (microtubule interacting and transport) d	85.31
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	85.14
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	85.02
KOG4014	248	consensus Uncharacterized conserved protein (conta	84.83
KOG2041	1189	consensus WD40 repeat protein [General function pr	84.66
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	83.73
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	83.61
COG2912	269	Uncharacterized conserved protein [Function unknow	82.81
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	82.59
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	82.0
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	81.99
KOG4563	400	consensus Cell cycle-regulated histone H1-binding	81.83
COG3014	449	Uncharacterized protein conserved in bacteria [Fun	80.9
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	80.63
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	80.6
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	80.57
COG4976	287	Predicted methyltransferase (contains TPR repeat)	80.06
PF12854	34	PPR_1: PPR repeat	80.04

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.51  E-value=2.5e-13  Score=98.64  Aligned_cols=120  Identities=18%  Similarity=0.276  Sum_probs=102.8

Q ss_pred             HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 028333           64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL  143 (210)
Q Consensus        64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~l  143 (210)
                      ..+..+.++++...+.                ...++..+|.+|...|+.+.|.+.|++|+++.++      ..++++|.
T Consensus        52 ~~A~~nlekAL~~DPs----------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~------~GdVLNNY  109 (250)
T COG3063          52 AQAKKNLEKALEHDPS----------------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN------NGDVLNNY  109 (250)
T ss_pred             HHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC------ccchhhhh
Confidence            3444556666665443                4556888999999999999999999999998777      78899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          144 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       144 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      |...+.+|+|++|..+|++|+...    .....+..+-|+|.|-...|+++.|.++|++++++.++
T Consensus       110 G~FLC~qg~~~eA~q~F~~Al~~P----~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~  171 (250)
T COG3063         110 GAFLCAQGRPEEAMQQFERALADP----AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ  171 (250)
T ss_pred             hHHHHhCCChHHHHHHHHHHHhCC----CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence            999999999999999999998765    55668899999999999999999999999999987654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.50  E-value=7.2e-13  Score=97.28  Aligned_cols=102  Identities=16%  Similarity=0.204  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHHHHHhCC
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL-QRQGK--YREAIKYHSMVLQISEREGE  172 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~-~~~~~--~~~A~~~~~~al~~~~~~~~  172 (210)
                      ....+..+|.+|...|++++|+..|++++.+.+.      ....+.++|.++ ...|+  +++|...++++++..     
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-----  140 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE------NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-----  140 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-----
Confidence            3457899999999999999999999999998765      688899999974 67777  599999999999886     


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                       +....++.++|.++...|++++|+.+|+++++..+.
T Consensus       141 -P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        141 -ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             -CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence             777899999999999999999999999999988764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.46  E-value=7.6e-13  Score=108.15  Aligned_cols=101  Identities=22%  Similarity=0.288  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      -+.+.+++|++|..+|.++.|...|.+++.+.+.      -+.+.+|+|.+|.++|++++|+.+|++++++.      |.
T Consensus       353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------P~  420 (966)
T KOG4626|consen  353 HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK------PT  420 (966)
T ss_pred             cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------ch
Confidence            3456788899999999999999999999887665      77888899999999999999999999998886      88


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .++++.|+|.+|.++|+.+.|+.+|.+||.+.+
T Consensus       421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP  453 (966)
T KOG4626|consen  421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINP  453 (966)
T ss_pred             HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence            888899999999999999999999988887654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.45  E-value=1.4e-12  Score=91.06  Aligned_cols=99  Identities=16%  Similarity=0.186  Sum_probs=89.8

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  179 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  179 (210)
                      ....|.++...|++++|+.+|.+++.+.+.      ...++.++|.++...|++++|+..|++++.+.      +..+..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~------p~~~~a   94 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW------SWRAHIALAGTWMMLKEYTTAINFYGHALMLD------ASHPEP   94 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCCcHH
Confidence            456799999999999999999999986444      78899999999999999999999999999875      778899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          180 YGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ++++|.++..+|++++|+..|+++++..+.+
T Consensus        95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~  125 (144)
T PRK15359         95 VYQTGVCLKMMGEPGLAREAFQTAIKMSYAD  125 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999877643

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.44  E-value=1.3e-12  Score=102.36  Aligned_cols=118  Identities=19%  Similarity=0.284  Sum_probs=108.4

Q ss_pred             ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333           90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus        90 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      .++...+-.+..++|+++.-.|+++.|+++|++.+.++..+++....+...+.+|.+|....++++|++|+++-+.++++
T Consensus       228 fGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe  307 (639)
T KOG1130|consen  228 FGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE  307 (639)
T ss_pred             hhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56776677788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          170 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       170 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +++..+...+++.+|..|..+|+.++|+.+.++.+.+.
T Consensus       308 L~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  308 LEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998887654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.43  E-value=1.8e-12  Score=80.86  Aligned_cols=74  Identities=28%  Similarity=0.565  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          135 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       135 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..+.++.++|.+|..+|++++|+++|++++++.+..++.. ..+.++.++|.+|..+|++++|++++++++++.+
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            4677888888888888888888888888888866665443 3578888888888888888888888888888765

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.42  E-value=4e-13  Score=105.14  Aligned_cols=134  Identities=18%  Similarity=0.270  Sum_probs=120.4

Q ss_pred             HHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 028333           65 AKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLG  144 (210)
Q Consensus        65 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg  144 (210)
                      .+.+.|..-+.....          +++.-.+..++-++|+.|+.+|+|+.|+...+.=+.+++..||....-.++.|+|
T Consensus       173 ~Av~fy~eNL~l~~~----------lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlg  242 (639)
T KOG1130|consen  173 NAVKFYMENLELSEK----------LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLG  242 (639)
T ss_pred             HHHHHHHHHHHHHHH----------hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccc
Confidence            344445555555444          6777778888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          145 ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .+|.-+|+++.|+++|++.+.++.++++....+...+.+|..|..+.++++|+.|+.+=+.+++
T Consensus       243 N~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  243 NCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             hhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999888875

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.39  E-value=1.3e-11  Score=76.96  Aligned_cols=73  Identities=21%  Similarity=0.342  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-EEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  168 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  168 (210)
                      .+.++.++|.+|..+|+|++|+.+|++++++.+..++.. ..+.+++++|.++..+|++++|+.++++++++.+
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            466789999999999999999999999999988888665 4689999999999999999999999999999874

...

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.39  E-value=3.4e-12  Score=104.45  Aligned_cols=98  Identities=21%  Similarity=0.284  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      ++.++|+..-..|+..+|..+|.+++.+++.      .+++.+|+|.+|..+|..+.|...|++++++.      +..+.
T Consensus       322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~------hadam~NLgni~~E~~~~e~A~~ly~~al~v~------p~~aa  389 (966)
T KOG4626|consen  322 AYNNLANALKDKGSVTEAVDCYNKALRLCPN------HADAMNNLGNIYREQGKIEEATRLYLKALEVF------PEFAA  389 (966)
T ss_pred             HHhHHHHHHHhccchHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC------hhhhh
Confidence            5788999999999999999999999998876      78899999999999999999999999999987      88889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ++.|+|.+|..+|++++|+.+|++++.+-+
T Consensus       390 a~nNLa~i~kqqgnl~~Ai~~YkealrI~P  419 (966)
T KOG4626|consen  390 AHNNLASIYKQQGNLDDAIMCYKEALRIKP  419 (966)
T ss_pred             hhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence            999999999999999999999999998765

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.37  E-value=2.2e-11  Score=84.49  Aligned_cols=102  Identities=18%  Similarity=0.121  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  173 (210)
                      .......+.+|..++..|+++.|...|+-...+.+.      ....++++|.++..+|+|++|++.|.+++.+.      
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~------   99 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK------   99 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence            345667899999999999999999999988886444      78899999999999999999999999998886      


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +..+..+.+.|.||...|+.+.|...|+.++...
T Consensus       100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        100 IDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            6677899999999999999999999999999876

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.37  E-value=7.1e-12  Score=94.43  Aligned_cols=105  Identities=25%  Similarity=0.368  Sum_probs=96.4

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  172 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  172 (210)
                      ....+..+..-|+-....++|.+|+..|.+|+.+.++      .+..|.+.+.+|.++|+|+.|+.-++.++.+.     
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-----  145 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT------NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-----  145 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC------cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-----
Confidence            4556777888999999999999999999999998766      78889999999999999999999999999986     


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                       +.-..+|.+||.+|..+|++++|++.|++++++-+.
T Consensus       146 -p~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~  181 (304)
T KOG0553|consen  146 -PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPD  181 (304)
T ss_pred             -hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCC
Confidence             677899999999999999999999999999998764

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.35  E-value=2.2e-11  Score=83.96  Aligned_cols=102  Identities=21%  Similarity=0.245  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      .....+.+|..+...|++++|...+++++.+.+.      ...++.++|.++...|++++|..+++++++..      +.
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~   83 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYALAAALD------PD   83 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CC
Confidence            3456788999999999999999999999886443      57789999999999999999999999998874      66


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ....++.+|.+|...|++++|..+|+++++..+.
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  117 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGE  117 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            7789999999999999999999999999987654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.35  E-value=2.2e-11  Score=95.01  Aligned_cols=104  Identities=20%  Similarity=0.121  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      ..+..++.+|.+|...|++++|+..|++++++.+.      .+.+++++|.++...|++++|+..|++++++.      |
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~------P  129 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPD------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD------P  129 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------C
Confidence            34567899999999999999999999999997554      57899999999999999999999999999886      6


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ....++.++|.++...|++++|++.|+++++..++|
T Consensus       130 ~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189        130 TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            677899999999999999999999999999877653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.30  E-value=1.2e-10  Score=83.53  Aligned_cols=108  Identities=19%  Similarity=0.264  Sum_probs=86.3

Q ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333           91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      ......+..++.+|.++..+|++++|+..|.+++.+.+   ++...+.++.++|.++...|++++|+.++++++.+.   
T Consensus        29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---  102 (168)
T CHL00033         29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---  102 (168)
T ss_pred             CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence            44555777899999999999999999999999998753   334456689999999999999999999999999874   


Q ss_pred             CCCcchHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHhh
Q 028333          171 GEYSGSTEAYGAIADCYT-------ELGDLERAARFYDKYISRL  207 (210)
Q Consensus       171 ~~~~~~~~~~~~lg~~y~-------~~g~~~~A~~~~~~al~~~  207 (210)
                         +.....+.++|.+|.       .+|+++.|..++++++..+
T Consensus       103 ---~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~  143 (168)
T CHL00033        103 ---PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYW  143 (168)
T ss_pred             ---cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHH
Confidence               333455666666666       8899887777777766543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.30  E-value=9.1e-11  Score=87.30  Aligned_cols=98  Identities=20%  Similarity=0.305  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      ...++|.++...|++++|+.++.+++....    .......+.++|.++...|++++|..+++++++..      +....
T Consensus       101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~  170 (234)
T TIGR02521       101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID------PQRPE  170 (234)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCChH
Confidence            345556666666666666666666554211    11233455566666666666666666666665543      33345


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      .+..+|.++...|++++|..+++++++.
T Consensus       171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       171 SLLELAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5666666666666666666666666654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.29  E-value=2.1e-10  Score=82.55  Aligned_cols=94  Identities=19%  Similarity=0.369  Sum_probs=79.0

Q ss_pred             ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333           90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus        90 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      ..++...+..++.+|..+...|++++|+.+|++++.+.+.   +.....++.++|.++...|++++|+.+++++++..  
T Consensus        28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--  102 (172)
T PRK02603         28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--  102 (172)
T ss_pred             cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence            3445567778899999999999999999999999987654   22346789999999999999999999999999875  


Q ss_pred             hCCCcchHHHHHHHHHHHHHcCC
Q 028333          170 EGEYSGSTEAYGAIADCYTELGD  192 (210)
Q Consensus       170 ~~~~~~~~~~~~~lg~~y~~~g~  192 (210)
                          +.....+..+|.+|..+|+
T Consensus       103 ----p~~~~~~~~lg~~~~~~g~  121 (172)
T PRK02603        103 ----PKQPSALNNIAVIYHKRGE  121 (172)
T ss_pred             ----cccHHHHHHHHHHHHHcCC
Confidence                5556778888999988776

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.27  E-value=9e-11  Score=74.21  Aligned_cols=84  Identities=26%  Similarity=0.410  Sum_probs=68.8

Q ss_pred             hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q 028333          109 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  188 (210)
Q Consensus       109 ~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  188 (210)
                      .+|+|+.|+.+++++++..+.  ++  ....++.+|.+++..|+|++|+..+++ .+..      +....+.+.+|.|+.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~------~~~~~~~~l~a~~~~   69 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD------PSNPDIHYLLARCLL   69 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH------HCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC------CCCHHHHHHHHHHHH
Confidence            368999999999999997664  22  455777899999999999999999999 4443      445677788899999


Q ss_pred             HcCCHHHHHHHHHHH
Q 028333          189 ELGDLERAARFYDKY  203 (210)
Q Consensus       189 ~~g~~~~A~~~~~~a  203 (210)
                      .+|++++|++.++++
T Consensus        70 ~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   70 KLGKYEEAIKALEKA   84 (84)
T ss_dssp             HTT-HHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHhcC
Confidence            999999999999875

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.26  E-value=9.4e-11  Score=93.65  Aligned_cols=99  Identities=16%  Similarity=0.201  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  179 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  179 (210)
                      +...|...+..++|+.|+..|.+++.+.+.      ...++.++|.++..+|++++|+..+++++++.      +....+
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~------P~~~~a   72 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN------NAELYADRAQANIKLGNFTEAVADANKAIELD------PSLAKA   72 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCCHHH
Confidence            556789999999999999999999997654      56789999999999999999999999999986      667889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          180 YGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ++++|.+|..+|++++|+.+|++++++.+++
T Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  103 (356)
T PLN03088         73 YLRKGTACMKLEEYQTAKAALEKGASLAPGD  103 (356)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999887653

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.26  E-value=4.8e-10  Score=86.94  Aligned_cols=132  Identities=21%  Similarity=0.331  Sum_probs=107.1

Q ss_pred             HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 028333           64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL  143 (210)
Q Consensus        64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~l  143 (210)
                      ..+.+.|.++......          .++....+..+...|.+|... ++++|+.+|++++.++...|.+...+..+..+
T Consensus        52 ~~A~~ay~kAa~~~~~----------~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l  120 (282)
T PF14938_consen   52 EKAAEAYEKAADCYEK----------LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL  120 (282)
T ss_dssp             HHHHHHHHHHHHHHHH----------TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4444555555554443          455556676777788887766 99999999999999999999999999999999


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          144 GASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       144 g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      |.+|... |++++|+++|++|+++.+..+.......++..+|.++..+|+|++|++.|++....
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            9999998 99999999999999999888766677889999999999999999999999998764

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.24  E-value=9.7e-10  Score=90.42  Aligned_cols=138  Identities=19%  Similarity=0.224  Sum_probs=112.5

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAA  140 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~  140 (210)
                      +..++..|++++......        .-.+.+.-+..+.++|..|+..|+|++|..++++|+++.++.  ..+...+..+
T Consensus       257 ~~eAv~ly~~AL~i~e~~--------~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l  328 (508)
T KOG1840|consen  257 YDEAVNLYEEALTIREEV--------FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL  328 (508)
T ss_pred             HHHHHHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence            455555666666654321        123445667788999999999999999999999999999883  3455667789


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          141 RGLGASLQRQGKYREAIKYHSMVLQISEREG--EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .+++.++..++++++|..++++++++..+..  +.+..+..+.++|.+|..+|++++|.+.|++|+.+..
T Consensus       329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~  398 (508)
T KOG1840|consen  329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR  398 (508)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999997432  3335778899999999999999999999999998764

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.22  E-value=6.8e-10  Score=74.46  Aligned_cols=105  Identities=24%  Similarity=0.253  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      .++..|..+..+|++++|+..|.+++...+   +......+++.+|.++...|++++|+.+|++++....   +.+....
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~   77 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYP---KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---KSPKAPD   77 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---CCCcccH
Confidence            578899999999999999999999987543   2333466889999999999999999999999987641   2233467


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ++..+|.++..+|++++|..+++++++..++
T Consensus        78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence            8999999999999999999999999988764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.22  E-value=4e-10  Score=87.41  Aligned_cols=112  Identities=24%  Similarity=0.324  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      +..+...|..|...+++++|...|.++.+...+.+++...+.++...+.+|... ++++|+.++++++++..+.++....
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a  113 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA  113 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            445567889999999999999999999999999999999999999999998777 9999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTEL-GDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~  209 (210)
                      +.++.++|.+|... |++++|+++|++|.++++.
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~  147 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ  147 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999 9999999999999998764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.22  E-value=1.2e-10  Score=70.65  Aligned_cols=66  Identities=30%  Similarity=0.461  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhc
Q 028333          137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLE  208 (210)
Q Consensus       137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~  208 (210)
                      +..+..+|.++...|++++|+.+|++++++.      +..+.+++++|.+|..+| ++++|+.++++++++.|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            5678899999999999999999999999885      777889999999999999 79999999999998753

...

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.21  E-value=2.2e-10  Score=98.08  Aligned_cols=94  Identities=10%  Similarity=0.171  Sum_probs=40.5

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  180 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  180 (210)
                      +.+|.+++..|++++|+.+|++++.+.+.      ...++.++|.++..+|++++|+..|+++++..      +....++
T Consensus       403 ~~lg~~~~~~g~~~~A~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------P~~~~~~  470 (615)
T TIGR00990       403 YHRAQLHFIKGEFAQAGKDYQKSIDLDPD------FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF------PEAPDVY  470 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCcc------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCChHHH
Confidence            33444444444444444444444443221      22233344444444444444444444444332      3334444


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          181 GAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       181 ~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      ..+|.++..+|++++|+..|++++++
T Consensus       471 ~~lg~~~~~~g~~~~A~~~~~~Al~l  496 (615)
T TIGR00990       471 NYYGELLLDQNKFDEAIEKFDTAIEL  496 (615)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            44555555555555555555555444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.21  E-value=3e-10  Score=97.29  Aligned_cols=101  Identities=16%  Similarity=0.102  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      .+.++..+|.++..+|++++|+..|++++.+.+.      ...++.++|.++...|++++|+.+|+++++..      +.
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~  397 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPR------VTQSYIKRASMNLELGDPDKAEEDFDKALKLN------SE  397 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CC
Confidence            3445566666666666666666666666664332      34455555666666666666666666655542      33


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ...+++++|.++...|++++|+.+|++++++.+
T Consensus       398 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P  430 (615)
T TIGR00990       398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP  430 (615)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence            445555555555555555555555555555433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.19  E-value=2.4e-10  Score=72.54  Aligned_cols=98  Identities=27%  Similarity=0.405  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      +++.+|.++...|++++|+..++++++..+.      ...++..+|.++...+++++|+.+++++++..      +....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~   69 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYEKALELD------PDNAK   69 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------Ccchh
Confidence            4678899999999999999999999886543      34678999999999999999999999998765      34447


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ++..+|.++...|++++|..+++++++..+
T Consensus        70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          70 AYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            899999999999999999999999987654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.19  E-value=2.4e-10  Score=88.40  Aligned_cols=135  Identities=24%  Similarity=0.291  Sum_probs=118.7

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-Ch---HHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-DP---IEEKK  138 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~-~~---~~~~~  138 (210)
                      +++.++.+++++.++..          .+|...+..++..+|..|-...|+++|+.+..+|.++.+.++ +.   .....
T Consensus       138 fq~~Lesfe~A~~~A~~----------~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  138 FQKALESFEKALRYAHN----------NDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHHHHHHHHHHHhhc----------cCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            35566667777777665          677777888899999999999999999999999999999876 22   23456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +++.++.++..+|..-.|.++.+++.+++-..+|....+.+...+|++|...|+.+.|..-|++|....
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999999999999999999999998764

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=3.1e-10  Score=90.17  Aligned_cols=98  Identities=20%  Similarity=0.387  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..++.-+|.-|..+++...|+..|++|++++++      .-++++++|.+|-.++-..=|+-||++|.+..      |..
T Consensus       364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~------DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k------PnD  431 (559)
T KOG1155|consen  364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR------DYRAWYGLGQAYEIMKMHFYALYYFQKALELK------PND  431 (559)
T ss_pred             hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch------hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC------CCc
Confidence            344555677777777777777777777776655      55566666666666666666666666665553      445


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      ...+..+|.||.++++.++|+++|.+|+..
T Consensus       432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~  461 (559)
T KOG1155|consen  432 SRLWVALGECYEKLNRLEEAIKCYKRAILL  461 (559)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence            556666666666666666666666666543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=1.5e-10  Score=93.78  Aligned_cols=107  Identities=23%  Similarity=0.317  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ..+...+|.+.+..+.|++|..+|++++...+....... -...+.|+|.++++++.+++|+.++++++...      +.
T Consensus       414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~------~k  487 (611)
T KOG1173|consen  414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS------PK  487 (611)
T ss_pred             chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC------CC
Confidence            346788999999999999999999999988877665543 34478899999999999999999999999886      77


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .+.++..+|.+|..+|+++.|+++|.+++.+.+.
T Consensus       488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~  521 (611)
T KOG1173|consen  488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPD  521 (611)
T ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence            7899999999999999999999999999987664

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.19  E-value=5.1e-10  Score=81.61  Aligned_cols=99  Identities=16%  Similarity=0.164  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      -+.+...+|..|+..|++..|...+++|++..++      ...++..++.+|...|+.+.|-+.|++|+.+.      +.
T Consensus        34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~------p~  101 (250)
T COG3063          34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS------YYLAHLVRAHYYQKLGENDLADESYRKALSLA------PN  101 (250)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC------CC
Confidence            4556788999999999999999999999997665      67789999999999999999999999999987      77


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      ..++++|-|.-++.+|++++|..+|++|+.-
T Consensus       102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~  132 (250)
T COG3063         102 NGDVLNNYGAFLCAQGRPEEAMQQFERALAD  132 (250)
T ss_pred             ccchhhhhhHHHHhCCChHHHHHHHHHHHhC
Confidence            8899999999999999999999999999863

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.17  E-value=1.4e-09  Score=89.42  Aligned_cols=114  Identities=20%  Similarity=0.237  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-K-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--  170 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--  170 (210)
                      ....++..+|..|..+|+|++|+..++.++++..+. + +.........++|.+|..++++.+|+..|++|+.+.+..  
T Consensus       197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G  276 (508)
T KOG1840|consen  197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG  276 (508)
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence            345566779999999999999999999999986543 2 344456667789999999999999999999999999864  


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .+++..+.++.+||..|...|++++|..++++|+++.+
T Consensus       277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~  314 (508)
T KOG1840|consen  277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYE  314 (508)
T ss_pred             CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence            45667889999999999999999999999999999875

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.14  E-value=4e-09  Score=73.70  Aligned_cols=100  Identities=26%  Similarity=0.286  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      ....+.+.+|.+++..|++++|...|++++...   .++.....+...++.++...|++++|+..++..       .+..
T Consensus        46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~  115 (145)
T PF09976_consen   46 YAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLARLRLARILLQQGQYDEALATLQQI-------PDEA  115 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcc
Confidence            345578889999999999999999999998843   456667788999999999999999999999663       1335


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYI  204 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  204 (210)
                      ..+..+..+|.+|...|++++|+..|++|+
T Consensus       116 ~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  116 FKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            567788999999999999999999999885

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.11  E-value=1.9e-09  Score=80.18  Aligned_cols=103  Identities=22%  Similarity=0.352  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ...+..+|.++..+|++++|+..+++++.+.+.      ...++.++|.++...|++++|+.++++++...    ..+..
T Consensus        65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~  134 (234)
T TIGR02521        65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPN------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP----LYPQP  134 (234)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc----ccccc
Confidence            445677888888888888888888888876443      34577888888888888888888888887642    22345


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ...+.++|.++...|++++|..+++++++..+.
T Consensus       135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  167 (234)
T TIGR02521       135 ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ  167 (234)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            567888899999999999999999888876543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.10  E-value=3.9e-09  Score=80.60  Aligned_cols=106  Identities=15%  Similarity=0.184  Sum_probs=90.4

Q ss_pred             HHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           98 LSRLKTGKNF-LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        98 ~~~~~~g~~~-~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ...+..|... +..|+|++|+..|++.+...+.   ......+++.+|.+|+..|++++|+..|+++++..   .+.+..
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~---s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~~  216 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD---STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPKA  216 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcch
Confidence            3457777765 5679999999999999997765   44456789999999999999999999999997664   355678


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .++++.+|.+|..+|++++|...|++.++.+++
T Consensus       217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            899999999999999999999999999987764

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=2e-10  Score=94.55  Aligned_cols=62  Identities=23%  Similarity=0.228  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      +++++|.+|.++++++.|.-+|++|+++.      |........+|.++..+|+.++|+..|++|+.+
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~IN------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l  552 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVEIN------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL  552 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhcCC------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence            44555555555555555555555554443      333444444555555555555555555555443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1.4e-09  Score=86.57  Aligned_cols=105  Identities=26%  Similarity=0.347  Sum_probs=92.6

Q ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333           91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      +-++.+..+++.+|+.|-.++...=|+-||++|...-+.      ....+..+|.||.+.++.++|+.+|++++...   
T Consensus       392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn------DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~---  462 (559)
T KOG1155|consen  392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN------DSRLWVALGECYEKLNRLEEAIKCYKRAILLG---  462 (559)
T ss_pred             hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC------chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc---
Confidence            334456778999999999999999999999999996444      67788999999999999999999999998875   


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                         .....++..+|..|.++++..+|..+|++.++..
T Consensus       463 ---dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  463 ---DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             ---ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence               3456889999999999999999999999999854

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.08  E-value=1.1e-09  Score=66.38  Aligned_cols=65  Identities=28%  Similarity=0.437  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQIS  167 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~  167 (210)
                      +..+..+|.+++..|+|++|+.+|++++++.+.      .+.+++++|.++..+| ++++|+.++++++++.
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            456889999999999999999999999998655      7889999999999999 7999999999999874

...

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.07  E-value=2.3e-09  Score=95.17  Aligned_cols=101  Identities=15%  Similarity=0.209  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ...+.++|.++...|++++|+..|++++.+.+.      ...++.++|.++...|++++|+..++++++..      |..
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~------P~~  676 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN------NSNYQAALGYALWDSGDIAQSREMLERAHKGL------PDD  676 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCC
Confidence            346789999999999999999999999997655      66799999999999999999999999999886      777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +.+++++|.++..+|++++|+.+|+++++..++
T Consensus       677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDN  709 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            899999999999999999999999999987654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=4.7e-09  Score=79.43  Aligned_cols=121  Identities=16%  Similarity=0.234  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 028333           46 ELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE  125 (210)
Q Consensus        46 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  125 (210)
                      +-++++.+=...-..-.++.+++.|.+++.+.+.                .+.-+.+.|.+|.++|+|+.|++-++.++.
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~----------------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~  143 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT----------------NAVYYCNRAAAYSKLGEYEDAVKDCESALS  143 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC----------------cchHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            3345555555555666688899999999988765                455678899999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHH
Q 028333          126 LAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE  194 (210)
Q Consensus       126 l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~  194 (210)
                      +-++      ...+|..||.+|..+|++++|++.|++++++.      |.+.....+|..+-.++++..
T Consensus       144 iDp~------yskay~RLG~A~~~~gk~~~A~~aykKaLeld------P~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  144 IDPH------YSKAYGRLGLAYLALGKYEEAIEAYKKALELD------PDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             cChH------HHHHHHHHHHHHHccCcHHHHHHHHHhhhccC------CCcHHHHHHHHHHHHHhcCCC
Confidence            7555      89999999999999999999999999999986      666677777777777766654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.05  E-value=7.8e-10  Score=91.11  Aligned_cols=105  Identities=13%  Similarity=0.138  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  172 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  172 (210)
                      +.....+++.+|.+|.++++++.|.-+|++|+++.++      .......+|..+.+.|+.++|+.++++|+.+.     
T Consensus       485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~------nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----  553 (638)
T KOG1126|consen  485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS------NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----  553 (638)
T ss_pred             CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc------chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----
Confidence            3445667999999999999999999999999998766      67778899999999999999999999998775     


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                       +..+.+.+..|.++..++++++|+..+++..++.+.
T Consensus       554 -~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~  589 (638)
T KOG1126|consen  554 -PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ  589 (638)
T ss_pred             -CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence             566677888888888888888888888887766554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=3.6e-09  Score=83.13  Aligned_cols=108  Identities=16%  Similarity=0.194  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-Ch--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-DP--------IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  166 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~-~~--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  166 (210)
                      .+.....-|+.|+..|+|..|...|++++....... .+        .....++.|++.|+.++++|..|+.++.+++.+
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            344456689999999999999999999999876421 11        112347889999999999999999999999988


Q ss_pred             HHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          167 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       167 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .      +.+..++++.|.++..+|+++.|+..|++++++-+.
T Consensus       287 ~------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~  323 (397)
T KOG0543|consen  287 D------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS  323 (397)
T ss_pred             C------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence            6      788899999999999999999999999999998764

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.01  E-value=4e-10  Score=91.51  Aligned_cols=102  Identities=21%  Similarity=0.222  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      +..+...+|.+|+..++|++|+.+|+.||.+-+.      ....++.+|.+.....+.++|+.-|++|+++.      |+
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq------P~  496 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN------DYLLWNRLGATLANGNRSEEAISAYNRALQLQ------PG  496 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC------CC
Confidence            4446778999999999999999999999995443      77889999999999999999999999999986      88


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ...+.+|+|.+|..+|.|++|.++|-.||.+-++
T Consensus       497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  497 YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            8899999999999999999999999999987653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.01  E-value=9.5e-09  Score=77.52  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ--------GKYREAIKYHSMVLQISE  168 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~~  168 (210)
                      ..+++.+|.++..++++++|+..|+++++..+.   ......+++.+|.++...        |++++|+..|+++++...
T Consensus        70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  146 (235)
T TIGR03302        70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN---HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP  146 (235)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence            346788999999999999999999999997764   233455788999999876        889999999999987642


Q ss_pred             HhCCCcc-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          169 REGEYSG-----------STEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       169 ~~~~~~~-----------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .......           .......+|.+|...|++.+|+..|+++++..++
T Consensus       147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~  198 (235)
T TIGR03302       147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPD  198 (235)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC
Confidence            2110000           0012347899999999999999999999987653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK12370 invasion protein regulator; Provisional

Probab=99.01  E-value=3.9e-09  Score=89.28  Aligned_cols=99  Identities=16%  Similarity=-0.011  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ...++..+|.++...|++++|+..|++++++.+.      .+.+++++|.++...|++++|+..+++++++.      |.
T Consensus       337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~------P~  404 (553)
T PRK12370        337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYYYGWNLFMAGQLEEALQTINECLKLD------PT  404 (553)
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CC
Confidence            3334445555555555555555555555554333      34455555555555555555555555555543      22


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      ....+..++.++...|++++|+.++++++..
T Consensus       405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~  435 (553)
T PRK12370        405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQ  435 (553)
T ss_pred             ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            2233333444444455555555555555443

>PRK12370 invasion protein regulator; Provisional

Probab=99.00  E-value=6.4e-09  Score=87.99  Aligned_cols=99  Identities=13%  Similarity=0.048  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..+++.+|.++...|++++|+..+++++.+.+.      .......++.+++..|++++|+..++++++..     .+..
T Consensus       372 ~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~------~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-----~p~~  440 (553)
T PRK12370        372 ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT------RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-----LQDN  440 (553)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-----cccC
Confidence            345788999999999999999999999997654      23344556667778999999999999987652     2455


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      +..+.++|.+|..+|++++|...+++....
T Consensus       441 ~~~~~~la~~l~~~G~~~eA~~~~~~~~~~  470 (553)
T PRK12370        441 PILLSMQVMFLSLKGKHELARKLTKEISTQ  470 (553)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence            678999999999999999999999887654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.98  E-value=1.1e-08  Score=77.11  Aligned_cols=108  Identities=17%  Similarity=0.126  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      .+..++.+|..++..|+++.|+..+++++...+.   ......+++.+|.++...|++++|+..++++++...   +.+.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~  105 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF---SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP---NHPD  105 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCc
Confidence            4557899999999999999999999999886543   344566889999999999999999999999987753   3344


Q ss_pred             hHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhhcc
Q 028333          176 STEAYGAIADCYTEL--------GDLERAARFYDKYISRLES  209 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~--------g~~~~A~~~~~~al~~~~~  209 (210)
                      ...+++.+|.++...        |++++|+..|++++...+.
T Consensus       106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  147 (235)
T TIGR03302       106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN  147 (235)
T ss_pred             hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence            556899999999886        8899999999999887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.96  E-value=3.3e-09  Score=63.52  Aligned_cols=63  Identities=22%  Similarity=0.366  Sum_probs=50.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          142 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      .+|..++..|++++|+..|+++++..      |....+++.+|.++..+|++++|+.+|+++++..+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQD------PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCS------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            57888888888888888888886654      7778888888888888888888888888888877653

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.93  E-value=3.2e-08  Score=74.37  Aligned_cols=104  Identities=19%  Similarity=0.228  Sum_probs=93.4

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  179 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  179 (210)
                      .++.|.-++..|+|..|...|.+.++-++   +....+.++++||.+++.+|+|+.|...|..+.+   ...+.+..+++
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP---~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApda  217 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYP---NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDA  217 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHH
Confidence            78899999999999999999999998555   4666888999999999999999999999999855   45566778899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          180 YGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ++.+|.|...+|+.++|...|++.++.++.
T Consensus       218 llKlg~~~~~l~~~d~A~atl~qv~k~YP~  247 (262)
T COG1729         218 LLKLGVSLGRLGNTDEACATLQQVIKRYPG  247 (262)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            999999999999999999999999988764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.91  E-value=2e-08  Score=86.54  Aligned_cols=94  Identities=15%  Similarity=0.198  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhCCCHHH----HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333          100 RLKTGKNFLRNQDLEK----AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~----A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ...+|..+...|++++    |+..|++++.+.+.      ...++..+|.++...|++++|+.+++++++..      +.
T Consensus       249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~------P~  316 (656)
T PRK15174        249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD------NVRIVTLYADALIRTGQNEKAIPLLQQSLATH------PD  316 (656)
T ss_pred             HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CC
Confidence            4445555555555543    45555555554332      33444555555555555555555555554432      33


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      ...++.++|.+|...|++++|+..|+++++
T Consensus       317 ~~~a~~~La~~l~~~G~~~eA~~~l~~al~  346 (656)
T PRK15174        317 LPYVRAMYARALRQVGQYTAASDEFVQLAR  346 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            334444445555555555555554444443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.91  E-value=1.4e-07  Score=63.31  Aligned_cols=101  Identities=16%  Similarity=0.133  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      +.+..|.++-..|+.++|+.+|++++....   +......++..+|.++..+|++++|+..+++++...   .+.+....
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL---~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~   76 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGL---SGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAA   76 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHH
Confidence            578899999999999999999999988421   234467799999999999999999999999997543   23334556


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      ....++.++...|++++|+.++-.++.
T Consensus        77 l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   77 LRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            677789999999999999999877653

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.91  E-value=4.8e-09  Score=83.65  Aligned_cols=107  Identities=22%  Similarity=0.226  Sum_probs=93.9

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  171 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  171 (210)
                      -++..+.++.+.|++-+..|++++|.+.|++++.      +...-..+++|+|.++-.+|+.++|+++|-+.-.+.    
T Consensus       485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~------ndasc~ealfniglt~e~~~~ldeald~f~klh~il----  554 (840)
T KOG2003|consen  485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL----  554 (840)
T ss_pred             ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH----
Confidence            3444566788899999999999999999999988      444567899999999999999999999999987776    


Q ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       172 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                        ...+.+++.++.+|..+.+..+|++++.++..+.++|
T Consensus       555 --~nn~evl~qianiye~led~aqaie~~~q~~slip~d  591 (840)
T KOG2003|consen  555 --LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND  591 (840)
T ss_pred             --HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC
Confidence              5568899999999999999999999999999888765

>PRK15331 chaperone protein SicA; Provisional

Probab=98.91  E-value=2.4e-08  Score=69.79  Aligned_cols=104  Identities=13%  Similarity=0.132  Sum_probs=85.2

Q ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333           91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      +-+.......+..|..++..|++++|...|.-..-+      .+...+.+.+||.++..+++|++|++.|-.+..+.   
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~---  101 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL---  101 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence            344456677899999999999999999998654442      22246678999999999999999999999997765   


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                         ...+...+..|.||..+|+.++|+.+|+.+++.
T Consensus       102 ---~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        102 ---KNDYRPVFFTGQCQLLMRKAAKARQCFELVNER  134 (165)
T ss_pred             ---cCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence               223345889999999999999999999999874

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.90  E-value=2.9e-08  Score=90.71  Aligned_cols=107  Identities=15%  Similarity=0.130  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH-H-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-E-------EKKAARGLGASLQRQGKYREAIKYHSMVLQISE  168 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~-~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  168 (210)
                      ..++..+|.++..+|++++|+.+|++++++.+...... .       ........|.++...|++++|+..|+++++.. 
T Consensus       303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-  381 (1157)
T PRK11447        303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-  381 (1157)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence            44688899999999999999999999999766532211 0       11233456889999999999999999999875 


Q ss_pred             HhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          169 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       169 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                           +....++..+|.+|...|++++|+.+|++++++.+.
T Consensus       382 -----P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~  417 (1157)
T PRK11447        382 -----NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG  417 (1157)
T ss_pred             -----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence                 566788999999999999999999999999987654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.90  E-value=2.4e-08  Score=86.03  Aligned_cols=102  Identities=15%  Similarity=0.150  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ...++..+|.++..+|++++|+..+++++.+.+.      ...++.++|.++...|++++|+..|+++++..      +.
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~------P~  350 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD------LPYVRAMYARALRQVGQYTAASDEFVQLAREK------GV  350 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cc
Confidence            3456788999999999999999999999997554      56678899999999999999999999998764      44


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ....+..+|.++...|++++|+..|+++++..++
T Consensus       351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence            4566777899999999999999999999987554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.7e-08  Score=81.57  Aligned_cols=99  Identities=16%  Similarity=0.272  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      .....|+.++..|+|..|+.+|.+++...+      ..+..|.|.|.||..++++..|+...++++++.      +....
T Consensus       360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~P------~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~------p~~~k  427 (539)
T KOG0548|consen  360 EEREKGNEAFKKGDYPEAVKHYTEAIKRDP------EDARLYSNRAACYLKLGEYPEALKDAKKCIELD------PNFIK  427 (539)
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCC------chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------chHHH
Confidence            445669999999999999999999998543      378899999999999999999999999999985      78889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +|.+-|.++..+.+|++|.+.|.++++..++
T Consensus       428 gy~RKg~al~~mk~ydkAleay~eale~dp~  458 (539)
T KOG0548|consen  428 AYLRKGAALRAMKEYDKALEAYQEALELDPS  458 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            9999999999999999999999999987653

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.89  E-value=7.5e-08  Score=77.87  Aligned_cols=104  Identities=17%  Similarity=0.176  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      ..+..+|.+|...|++++|...|.++++..      +....++..++.++...|++++|+..++++++..... ......
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~  180 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEG------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS-LRVEIA  180 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc-chHHHH
Confidence            345666666666777777776666666531      1234566667777777777777777777665442100 001234


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..+..+|.++...|++++|+.+|+++++..+
T Consensus       181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  211 (389)
T PRK11788        181 HFYCELAQQALARGDLDAARALLKKALAADP  211 (389)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc
Confidence            4566777777778888888888887776644

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.87  E-value=5e-08  Score=76.22  Aligned_cols=98  Identities=15%  Similarity=0.061  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ...+++++|.++...|++++|+..|++++++.+.      ...++.++|.++...|++++|+..|+++++..      |.
T Consensus        97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~------P~  164 (296)
T PRK11189         97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT------YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD------PN  164 (296)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CC
Confidence            3457899999999999999999999999997655      56789999999999999999999999998874      22


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      ... ......+....+++++|+..++++...
T Consensus       165 ~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        165 DPY-RALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             CHH-HHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence            221 111122345578899999999876644

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.86  E-value=1.6e-08  Score=70.57  Aligned_cols=83  Identities=11%  Similarity=0.097  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ...+++.+|.++...|++++|+..|.+++.+.+.      .+.+++++|.++...|++++|+..|+++++..      +.
T Consensus        57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~------p~  124 (144)
T PRK15359         57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS------HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS------YA  124 (144)
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CC
Confidence            4556899999999999999999999999997554      67899999999999999999999999999886      67


Q ss_pred             hHHHHHHHHHHHHHc
Q 028333          176 STEAYGAIADCYTEL  190 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~  190 (210)
                      .+..+.+.|.+...+
T Consensus       125 ~~~~~~~~~~~~~~l  139 (144)
T PRK15359        125 DASWSEIRQNAQIMV  139 (144)
T ss_pred             ChHHHHHHHHHHHHH
Confidence            777888888776544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.85  E-value=3.2e-07  Score=74.23  Aligned_cols=94  Identities=24%  Similarity=0.295  Sum_probs=44.0

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  180 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  180 (210)
                      ..+|..+...+++++|+.+|+++++..+.      ...++..+|.++...|++++|+..++++++...     .....++
T Consensus       184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~  252 (389)
T PRK11788        184 CELAQQALARGDLDAARALLKKALAADPQ------CVRASILLGDLALAQGDYAAAIEALERVEEQDP-----EYLSEVL  252 (389)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhHCcC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-----hhHHHHH
Confidence            44555555555555555555555543222      233444555555555555555555555543310     1112334


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          181 GAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       181 ~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      ..++.+|...|++++|...++++++
T Consensus       253 ~~l~~~~~~~g~~~~A~~~l~~~~~  277 (389)
T PRK11788        253 PKLMECYQALGDEAEGLEFLRRALE  277 (389)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4444444444444444444444443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.82  E-value=2.2e-08  Score=77.64  Aligned_cols=103  Identities=24%  Similarity=0.350  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ....+...|.++...|++++|+..|++++++.+.      ...+...+++++...|+++++...++...+..      +.
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~------~~  212 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPD------DPDARNALAWLLIDMGDYDEAREALKRLLKAA------PD  212 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------HT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC------cC
Confidence            4556788899999999999999999999998765      55567777888888888887777776665543      22


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      .+..+..+|.+|..+|++++|+.+|+++++..++|
T Consensus       213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d  247 (280)
T PF13429_consen  213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD  247 (280)
T ss_dssp             SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHHHHHhccccccccccccccccccccccc
Confidence            23456677888888888888888888888766543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.79  E-value=6.9e-08  Score=85.21  Aligned_cols=99  Identities=15%  Similarity=0.232  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..+++.+|.++...|++++|+..|+++++..+.      ...++.++|.++...|+ ++|+.+++++++..      +..
T Consensus       770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~------~~~  836 (899)
T TIGR02917       770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD------NAVVLNNLAWLYLELKD-PRALEYAEKALKLA------PNI  836 (899)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC------CCC
Confidence            346777888888889999999888888875443      45567777888888887 77888888887654      444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ...+..+|.++...|++++|..+|+++++..+
T Consensus       837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       837 PAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            56677788888888888888888888887654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.79  E-value=1.5e-07  Score=63.00  Aligned_cols=99  Identities=20%  Similarity=0.186  Sum_probs=85.7

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  179 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  179 (210)
                      +-..|......|+.+.|++.|.+++.++++      .+.+|+|.+.++..+|+.++|++.+++++++...  .......+
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~--~trtacqa  117 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAGD--QTRTACQA  117 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc--cchHHHHH
Confidence            344688888999999999999999999987      8899999999999999999999999999998721  11224467


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          180 YGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      +...|.+|..+|+-+.|..-|+.|-.+
T Consensus       118 ~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  118 FVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             HHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            899999999999999999999988654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.78  E-value=1e-07  Score=81.95  Aligned_cols=99  Identities=14%  Similarity=0.064  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..+..+.+.+...++++++|+..+++++...+.      .+.+++.+|.++...|++++|++.|++++.-      .+..
T Consensus       120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~------~p~~  187 (694)
T PRK15179        120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS------SAREILLEAKSWDEIGQSEQADACFERLSRQ------HPEF  187 (694)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC------CHHHHHHHHHHHHHhcchHHHHHHHHHHHhc------CCCc
Confidence            335666778888888888888888888775544      6777888888888888888888888888652      2566


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ..++..+|.++...|+.++|...|+++++..
T Consensus       188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            7788888888888888888888888887764

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.78  E-value=4.8e-07  Score=70.53  Aligned_cols=110  Identities=20%  Similarity=0.231  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc--
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--  175 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--  175 (210)
                      .+...+|..+.-++.+++++++|++|+.++...+|+.....++..+|..|...+|+++|+-+..+|.++.+..+-...  
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            346668999999999999999999999999999999999999999999999999999999999999999987652222  


Q ss_pred             --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          176 --STEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       176 --~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                        ...+++.++..+..+|+.-.|.++++++.++.
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence              55678999999999999999999999998764

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.77  E-value=1.9e-07  Score=67.13  Aligned_cols=106  Identities=23%  Similarity=0.275  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      .+..+-.-|+-++..|+|++|...|..|+.+++.... ......|.|.|.+..+++.++.|+.-+.++|++-      +.
T Consensus        94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~------pt  166 (271)
T KOG4234|consen   94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELN------PT  166 (271)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC------ch
Confidence            3445667899999999999999999999999987544 4467788999999999999999999999999985      66


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ...++.+.|..|..+..|+.|++-|.+.++..+
T Consensus       167 y~kAl~RRAeayek~ek~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  167 YEKALERRAEAYEKMEKYEEALEDYKKILESDP  199 (271)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence            667888999999999999999999999988765

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.77  E-value=1.3e-07  Score=81.33  Aligned_cols=98  Identities=11%  Similarity=0.111  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ...++..+|.+....|.+++|...++.++++++.      ...+..+++.++.+.+++++|+..++++++..      +.
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd------~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~------p~  152 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD------SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG------SS  152 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC------CC
Confidence            3557899999999999999999999999998876      78899999999999999999999999998886      88


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      .+..++.+|.++..+|++++|...|++++.
T Consensus       153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~  182 (694)
T PRK15179        153 SAREILLEAKSWDEIGQSEQADACFERLSR  182 (694)
T ss_pred             CHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            899999999999999999999999999996

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=1.1e-07  Score=72.34  Aligned_cols=103  Identities=20%  Similarity=0.230  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCC
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG---KYREAIKYHSMVLQISEREGE  172 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~~~  172 (210)
                      ++..+..+|.+|+.+++++.|...|.+|+.+.++      .+..+..+|.+++...   ...++...|++++...     
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~------n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-----  223 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD------NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-----  223 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-----
Confidence            4556888999999999999999999999998776      6777888888876533   4578999999998875     


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                       +....+.+.+|..+++.|+|.+|...++..++..+.|
T Consensus       224 -~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         224 -PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             -CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence             7778899999999999999999999999999877643

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=4.7e-08  Score=79.62  Aligned_cols=105  Identities=24%  Similarity=0.326  Sum_probs=89.7

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc-chHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTE  178 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~  178 (210)
                      .+.+|.-|..++++..|..+|..|+.+++.      .+-.++.+|.+.+..+.|.+|..+|+.++...+...+.. ....
T Consensus       383 ~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p  456 (611)
T KOG1173|consen  383 SLYLGMEYMRTNNLKLAEKFFKQALAIAPS------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP  456 (611)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCCC------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH
Confidence            456788899999999999999999999887      566889999999999999999999999997666544332 2445


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      .+.|+|.+|.+++++++|+.+|++++...++|
T Consensus       457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~  488 (611)
T KOG1173|consen  457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD  488 (611)
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence            69999999999999999999999999876653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.75  E-value=2.1e-07  Score=82.97  Aligned_cols=96  Identities=13%  Similarity=0.148  Sum_probs=82.0

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHH
Q 028333          102 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  181 (210)
Q Consensus       102 ~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  181 (210)
                      .++......|++++|+..|++++.+.+      . ..++.++|.++...|++++|+..+++++...      |....++.
T Consensus       581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P------~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~------Pd~~~a~~  647 (987)
T PRK09782        581 WLHAQRYIPGQPELALNDLTRSLNIAP------S-ANAYVARATIYRQRHNVPAAVSDLRAALELE------PNNSNYQA  647 (987)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCC------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHH
Confidence            345555566999999999999988643      1 5678999999999999999999999998886      77789999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          182 AIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       182 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ++|.++...|++++|+..|+++++..+++
T Consensus       648 nLG~aL~~~G~~eeAi~~l~~AL~l~P~~  676 (987)
T PRK09782        648 ALGYALWDSGDIAQSREMLERAHKGLPDD  676 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999887653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.75  E-value=4.3e-08  Score=58.60  Aligned_cols=61  Identities=26%  Similarity=0.440  Sum_probs=54.1

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      +.+|..++..|++++|+..|++++...+      ....+++.+|.++..+|++++|+.+|+++++..
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDP------DNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCST------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            3579999999999999999999998543      388999999999999999999999999998775

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.74  E-value=1.6e-07  Score=85.93  Aligned_cols=107  Identities=16%  Similarity=0.215  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH------------------------------------HHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE------------------------------------EKKAA  140 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~------------------------------------~~~~~  140 (210)
                      ..++..+|.++..+|++++|+.+|++++++.+.......                                    ....+
T Consensus       385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~  464 (1157)
T PRK11447        385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRL  464 (1157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH
Confidence            346788999999999999999999999986543211000                                    01223


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          141 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..+|.++...|++++|+..|+++++..      |....+++.+|.+|...|++++|+..++++++..+.
T Consensus       465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~------P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~  527 (1157)
T PRK11447        465 AQQAEALENQGKWAQAAELQRQRLALD------PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN  527 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            456777888999999999999998875      666788999999999999999999999999886553

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=5.2e-08  Score=78.27  Aligned_cols=94  Identities=19%  Similarity=0.260  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      ..+..+-+.|+-++..|+|++|+.||..|+++++.      .+..|.|++.||...|++++-++...+++++.      |
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~------epiFYsNraAcY~~lgd~~~Vied~TkALEl~------P  180 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD------EPIFYSNRAACYESLGDWEKVIEDCTKALELN------P  180 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC------CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC------c
Confidence            45667788999999999999999999999998876      57889999999999999999999999999986      7


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHH
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFY  200 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~  200 (210)
                      .-..++++.+..+..+|++++|+.-.
T Consensus       181 ~Y~KAl~RRA~A~E~lg~~~eal~D~  206 (606)
T KOG0547|consen  181 DYVKALLRRASAHEQLGKFDEALFDV  206 (606)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHhh
Confidence            77899999999999999999998644

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.71  E-value=5.7e-07  Score=66.41  Aligned_cols=108  Identities=18%  Similarity=0.170  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ....++..|...+..|+|.+|+..|++.....+.   +.....+...+|.+++..|+|+.|+..+++.++..   .+.+.
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y---P~~~~   77 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY---PNSPK   77 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----TT-TT
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcc
Confidence            3456899999999999999999999999886654   55577899999999999999999999999997765   34566


Q ss_pred             hHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhhcc
Q 028333          176 STEAYGAIADCYTELGD-----------LERAARFYDKYISRLES  209 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~-----------~~~A~~~~~~al~~~~~  209 (210)
                      ...+++.+|.++..+.+           ..+|+..|+..++.+++
T Consensus        78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~  122 (203)
T PF13525_consen   78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN  122 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred             hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence            78899999999876542           35888888888887764

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=6.7e-08  Score=77.65  Aligned_cols=99  Identities=24%  Similarity=0.267  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      .+++..|.+++-+++|++|+.-|++++.+.+.      .+.++..++.+.+++++++++...|+.+++-.      |..+
T Consensus       395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF------P~~~  462 (606)
T KOG0547|consen  395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPE------NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF------PNCP  462 (606)
T ss_pred             chhHhHHHHHHHHHHHHHHHHHHHHHhhcChh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCc
Confidence            36889999999999999999999999998666      78889999999999999999999999998876      7788


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .+|.--|.++..+++|++|.+.|++|+++-+
T Consensus       463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~  493 (606)
T KOG0547|consen  463 EVYNLFAEILTDQQQFDKAVKQYDKAIELEP  493 (606)
T ss_pred             hHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999998754

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.70  E-value=1.7e-07  Score=74.86  Aligned_cols=102  Identities=21%  Similarity=0.202  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      .......+|.++..+|++++|+..+++++++.+.      ...++..+|.++...|++++|+.+++++++....  +...
T Consensus       113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~  184 (355)
T cd05804         113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSML  184 (355)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--Ccch
Confidence            4556678899999999999999999999997665      3667899999999999999999999999876532  1122


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      ....+..+|.++...|++++|+..|++++.
T Consensus       185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         185 RGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            345678999999999999999999999864

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=7.3e-07  Score=65.51  Aligned_cols=112  Identities=13%  Similarity=0.143  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      +..+..-|+.|...++++.|-..|.++-++..+.++.+..+..|...+.+|..- +.++|+.++++++++..+.+....-
T Consensus        34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~a  112 (288)
T KOG1586|consen   34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMA  112 (288)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHH
Confidence            445566788999999999999999999999999998888898999888888755 9999999999999999988877777


Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTEL-GDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~  209 (210)
                      +.-+..||.+|..- .++++|+.+|+++-+.++.
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~  146 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG  146 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence            78899999999775 9999999999999887654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.69  E-value=2.2e-07  Score=69.19  Aligned_cols=97  Identities=24%  Similarity=0.264  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      .+...|......|+|..|+..+.++..+.+.      .+.+++.+|.+|.+.|+++.|..-|.+++++.      +....
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~------~~~p~  169 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPT------DWEAWNLLGAALDQLGRFDEARRAYRQALELA------PNEPS  169 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhccCCC------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhc------cCCch
Confidence            3444899999999999999999999997665      78899999999999999999999999999997      66778


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ...|+|..|...|+++.|..++..+....
T Consensus       170 ~~nNlgms~~L~gd~~~A~~lll~a~l~~  198 (257)
T COG5010         170 IANNLGMSLLLRGDLEDAETLLLPAYLSP  198 (257)
T ss_pred             hhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            99999999999999999999999887543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.68  E-value=3e-07  Score=81.18  Aligned_cols=105  Identities=23%  Similarity=0.221  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  172 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  172 (210)
                      .......+..+|.++...|++++|...|+++++..+.      ...++..+|.++...|++++|+..++++++..     
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----  189 (899)
T TIGR02917       121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR------SLYAKLGLAQLALAENRFDEARALIDEVLTAD-----  189 (899)
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence            3445567788999999999999999999999885443      45577888888888888888888888887653     


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                       +....++..+|.++...|++++|..+|+++++..+.
T Consensus       190 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~  225 (899)
T TIGR02917       190 -PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN  225 (899)
T ss_pred             -CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence             455677888888888888888888888888776543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.68  E-value=2.7e-07  Score=73.89  Aligned_cols=101  Identities=14%  Similarity=0.196  Sum_probs=81.9

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      +..+++.|.+++...+.                ...+++++|.++..+|++++|+..+++++.+.+.      ...+++.
T Consensus        18 ~~~Ai~~~~~Al~~~P~----------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~------~~~a~~~   75 (356)
T PLN03088         18 FALAVDLYTQAIDLDPN----------------NAELYADRAQANIKLGNFTEAVADANKAIELDPS------LAKAYLR   75 (356)
T ss_pred             HHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHHHHHH
Confidence            45566666666665432                2446889999999999999999999999998665      6778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  191 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  191 (210)
                      +|.++..+|+|++|+..|++++++.      +....+...++.|...+.
T Consensus        76 lg~~~~~lg~~~eA~~~~~~al~l~------P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         76 KGTACMKLEEYQTAKAALEKGASLA------PGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999886      566677777888866653

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.65  E-value=2.3e-06  Score=58.62  Aligned_cols=106  Identities=18%  Similarity=0.188  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      ..++..|...+..|+|++|++.|+....-.+   .......+...+|.+|+..++|++|+..+++-+++-.   .++...
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP---~hp~vd   84 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYP---FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP---THPNVD   84 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCCCcc
Confidence            3578899999999999999999998776433   4555677999999999999999999999999988853   456678


Q ss_pred             HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhhcc
Q 028333          178 EAYGAIADCYTELGD---------------LERAARFYDKYISRLES  209 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~---------------~~~A~~~~~~al~~~~~  209 (210)
                      .+++..|.++..+.+               ..+|...|++.+..+++
T Consensus        85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~  131 (142)
T PF13512_consen   85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN  131 (142)
T ss_pred             HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence            899999999999887               88999999999888765

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.63  E-value=3.9e-08  Score=75.52  Aligned_cols=92  Identities=10%  Similarity=0.177  Sum_probs=46.4

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Q 028333          104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  183 (210)
Q Consensus       104 g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  183 (210)
                      |..|+..++.+-|+.||.+.+++.-.      .++.+.|+|.|++..++++-++..|++++..+.+   ....+++|+|+
T Consensus       331 a~~yfY~~~PE~AlryYRRiLqmG~~------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNl  401 (478)
T KOG1129|consen  331 AVGYFYDNNPEMALRYYRRILQMGAQ------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNL  401 (478)
T ss_pred             eeccccCCChHHHHHHHHHHHHhcCC------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhcc
Confidence            44445555555555555555554332      3445555555555555555555555555544421   12234555555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHH
Q 028333          184 ADCYTELGDLERAARFYDKYI  204 (210)
Q Consensus       184 g~~y~~~g~~~~A~~~~~~al  204 (210)
                      |.+....||+..|..+|+-|+
T Consensus       402 g~vaV~iGD~nlA~rcfrlaL  422 (478)
T KOG1129|consen  402 GFVAVTIGDFNLAKRCFRLAL  422 (478)
T ss_pred             ceeEEeccchHHHHHHHHHHh
Confidence            555555555555555555444

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.63  E-value=1.4e-06  Score=66.04  Aligned_cols=105  Identities=11%  Similarity=0.013  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      ..+..|..++..|+|++|+..|++.+...+   ++.....+...+|.+|+..++|++|+..+++.++...   +++....
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P---~~~~~~~  107 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP---THPNIDY  107 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc---CCCchHH
Confidence            477889999999999999999999988655   3566777889999999999999999999999987753   5567889


Q ss_pred             HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHhhcc
Q 028333          179 AYGAIADCYTELG---------------D---LERAARFYDKYISRLES  209 (210)
Q Consensus       179 ~~~~lg~~y~~~g---------------~---~~~A~~~~~~al~~~~~  209 (210)
                      +++.+|.++..++               |   ..+|+..|++.++.+++
T Consensus       108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~  156 (243)
T PRK10866        108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN  156 (243)
T ss_pred             HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC
Confidence            9999999976654               1   24677888888887764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.62  E-value=6.8e-07  Score=78.58  Aligned_cols=100  Identities=18%  Similarity=0.217  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      +.++..+|..+...|++++|+..|++++.+.+.      ...+...+|.++...|++++|+..++++++..      |..
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~------P~~  116 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------NDDYQRGLILTLADAGQYDEALVKAKQLVSGA------PDK  116 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCC
Confidence            445788999999999999999999999997544      46677899999999999999999999998775      666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .. +..+|.++...|++++|+..++++++..++
T Consensus       117 ~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~  148 (765)
T PRK10049        117 AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ  148 (765)
T ss_pred             HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            66 999999999999999999999999988764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.61  E-value=1.8e-06  Score=61.99  Aligned_cols=76  Identities=18%  Similarity=0.234  Sum_probs=64.5

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          131 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       131 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ......+.+++++|..+...|++++|+.+|+++++....   .+....++.++|.++...|++++|+.+++++++..+.
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  104 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK  104 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            345567788999999999999999999999999887532   2335678999999999999999999999999987553

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.60  E-value=2.9e-07  Score=74.12  Aligned_cols=69  Identities=14%  Similarity=0.167  Sum_probs=59.9

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA---ARGLGASLQRQGKYREAIKYHSMVLQI  166 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~---~~~lg~~~~~~~~~~~A~~~~~~al~~  166 (210)
                      .++..+..++++|..++.+|+|++|+..|++++++      .+....+   ++|+|.+|..+|++++|+.++++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34457889999999999999999999999999994      5666644   899999999999999999999999876

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.59  E-value=1.8e-05  Score=56.81  Aligned_cols=102  Identities=25%  Similarity=0.194  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      -..+.+.++..+...+++++|+..++.++..   .+|....+.+-.+++.+..++|.+++|+..+...-       +...
T Consensus        88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-------~~~w  157 (207)
T COG2976          88 AVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-------EESW  157 (207)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-------cccH
Confidence            3446688999999999999999999998873   34566677788899999999999999988876552       2234


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      .+..-...|+++...|+-++|+..|+++++..
T Consensus       158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         158 AAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            55667789999999999999999999999874

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.58  E-value=2.5e-07  Score=79.65  Aligned_cols=105  Identities=19%  Similarity=0.153  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      .+++...+|.++...|++..|...|.++.+-...      ...++.|+|.||..+|+|..|++.|+.+++..-    ...
T Consensus       645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~------~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~----~~~  714 (1018)
T KOG2002|consen  645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD------FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY----KKN  714 (1018)
T ss_pred             hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh------CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc----ccC
Confidence            5778888999999999999999999988774332      456889999999999999999999999988763    345


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ...++..||++++..|++.+|.++..+|+...+.|
T Consensus       715 ~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~  749 (1018)
T KOG2002|consen  715 RSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN  749 (1018)
T ss_pred             CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence            67889999999999999999999999999877643

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.58  E-value=4.6e-07  Score=62.24  Aligned_cols=80  Identities=23%  Similarity=0.301  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHH
Q 028333          118 TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA  197 (210)
Q Consensus       118 ~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~  197 (210)
                      ..+++++...+      ........+|.++...|++++|+..+++++...      +....++.++|.++..+|++++|.
T Consensus         4 ~~~~~~l~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~~~~~~A~   71 (135)
T TIGR02552         4 ATLKDLLGLDS------EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD------PYNSRYWLGLAACCQMLKEYEEAI   71 (135)
T ss_pred             hhHHHHHcCCh------hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666433      356788999999999999999999999998764      667899999999999999999999


Q ss_pred             HHHHHHHHhhcc
Q 028333          198 RFYDKYISRLES  209 (210)
Q Consensus       198 ~~~~~al~~~~~  209 (210)
                      .+++++++..++
T Consensus        72 ~~~~~~~~~~p~   83 (135)
T TIGR02552        72 DAYALAAALDPD   83 (135)
T ss_pred             HHHHHHHhcCCC
Confidence            999999887654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=2.7e-07  Score=74.88  Aligned_cols=98  Identities=20%  Similarity=0.268  Sum_probs=87.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  179 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  179 (210)
                      ....|+..+..|+|+.|+.+|.+++.+.+.      ....|.|...+|..+|+|++|+.--.+.+++.      |..+..
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~------p~w~kg   72 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPT------NHVLYSNRSAAYASLGSYEKALKDATKTRRLN------PDWAKG   72 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCC------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC------CchhhH
Confidence            345688899999999999999999998655      66678899999999999999999999998886      778899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          180 YGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      |.+.|..+..+|+|++|+..|.+.++..++
T Consensus        73 y~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~  102 (539)
T KOG0548|consen   73 YSRKGAALFGLGDYEEAILAYSEGLEKDPS  102 (539)
T ss_pred             HHHhHHHHHhcccHHHHHHHHHHHhhcCCc
Confidence            999999999999999999999999987654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.56  E-value=6.7e-07  Score=65.75  Aligned_cols=89  Identities=17%  Similarity=0.231  Sum_probs=77.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH-H
Q 028333          110 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY-T  188 (210)
Q Consensus       110 ~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~  188 (210)
                      .++.++++..+++++...+.      ....+..+|.+|...|++++|+..|++++++.      +.....+..+|.++ .
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~------P~~~~~~~~lA~aL~~  119 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWRNDYDNALLAYRQALQLR------GENAELYAALATVLYY  119 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Confidence            55678888899999986554      67799999999999999999999999999986      77889999999984 6


Q ss_pred             HcCC--HHHHHHHHHHHHHhhccC
Q 028333          189 ELGD--LERAARFYDKYISRLESD  210 (210)
Q Consensus       189 ~~g~--~~~A~~~~~~al~~~~~~  210 (210)
                      ..|+  +++|...++++++..+++
T Consensus       120 ~~g~~~~~~A~~~l~~al~~dP~~  143 (198)
T PRK10370        120 QAGQHMTPQTREMIDKALALDANE  143 (198)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCCCC
Confidence            7787  599999999999887653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.56  E-value=2.5e-07  Score=71.24  Aligned_cols=102  Identities=16%  Similarity=0.195  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ++..+..++.++-.+++++.|.++|+.+++.-+      ...++...+|..|+.-++.+-|+.||++.+++-      -.
T Consensus       289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~------~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG------~~  356 (478)
T KOG1129|consen  289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHP------INVEAIACIAVGYFYDNNPEMALRYYRRILQMG------AQ  356 (478)
T ss_pred             hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC------ccceeeeeeeeccccCCChHHHHHHHHHHHHhc------CC
Confidence            555678889999999999999999999998543      367778889999999999999999999998875      45


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .+..+.|+|.|+.--++++.++..|++|+..+.+
T Consensus       357 speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~  390 (478)
T KOG1129|consen  357 SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ  390 (478)
T ss_pred             ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC
Confidence            6789999999999999999999999999987753

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.55  E-value=1.3e-06  Score=76.79  Aligned_cols=103  Identities=15%  Similarity=0.009  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ...+...+|..+...|++++|+..+++++...+.      ...++..+|.++...|++++|+..+++++.+.      |.
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~------n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~------Pd  425 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG------NQGLRIDYASVLQARGWPRAAENELKKAEVLE------PR  425 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CC
Confidence            3445678899999999999999999999987654      56789999999999999999999999999886      77


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ...+++..|.++...|++++|...++++++..+++
T Consensus       426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~  460 (765)
T PRK10049        426 NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD  460 (765)
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            77899999999999999999999999999887653

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.55  E-value=4.2e-07  Score=55.52  Aligned_cols=59  Identities=20%  Similarity=0.276  Sum_probs=38.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          144 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       144 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..+|...+++++|+.++++++.+.      |.....+...|.++..+|++++|...++++++..+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELD------PDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhC------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            345666666666666666666664      44556666666666666777777766666666554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.54  E-value=2e-06  Score=74.29  Aligned_cols=104  Identities=19%  Similarity=0.310  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      .++..++..|+-.|+|+.+....+-++....   .....+.+++.+|.+|-.+|+|++|..||.++++...     ....
T Consensus       271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~---~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~-----d~~~  342 (1018)
T KOG2002|consen  271 VALNHLANHFYFKKDYERVWHLAEHAIKNTE---NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN-----DNFV  342 (1018)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-----CCcc
Confidence            3577888889999999999888888877542   3556778889999999999999999999998877641     2235


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..++.+|.+|...|+++.|..+|++.++..++
T Consensus       343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~  374 (1018)
T KOG2002|consen  343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN  374 (1018)
T ss_pred             ccccchhHHHHHhchHHHHHHHHHHHHHhCcc
Confidence            66888999999999999999999988887664

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.54  E-value=3.1e-07  Score=71.19  Aligned_cols=97  Identities=22%  Similarity=0.271  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      +...++..+...|+++++...+.......+.      .+..+..+|.++..+|++++|+.+|+++++..      +..+.
T Consensus       182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~------~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~------p~d~~  249 (280)
T PF13429_consen  182 ARNALAWLLIDMGDYDEAREALKRLLKAAPD------DPDLWDALAAAYLQLGRYEEALEYLEKALKLN------PDDPL  249 (280)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT------SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS------TT-HH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHHCcC------HHHHHHHHHHHhcccccccccccccccccccc------ccccc
Confidence            4667889999999999988877777665443      33456788999999999999999999998765      77788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      .+..+|.++...|+.++|...+.++....
T Consensus       250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~~l  278 (280)
T PF13429_consen  250 WLLAYADALEQAGRKDEALRLRRQALRLL  278 (280)
T ss_dssp             HHHHHHHHHT-------------------
T ss_pred             ccccccccccccccccccccccccccccc
Confidence            99999999999999999999999987654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=5.3e-07  Score=71.20  Aligned_cols=104  Identities=24%  Similarity=0.289  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ....+..-|+-.+..|+|..|.+.|..++.+.+.  +....+..|.|.+.+...+|+..+|+..+++++.+.      +.
T Consensus       248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD------~s  319 (486)
T KOG0550|consen  248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID------SS  319 (486)
T ss_pred             HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC------HH
Confidence            3445566799999999999999999999999887  444577889999999999999999999999999986      56


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      -..++...|.|+..+++++.|.+.|++|++.-
T Consensus       320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            67899999999999999999999999998754

>PLN02789 farnesyltranstransferase

Probab=98.53  E-value=3.5e-06  Score=66.38  Aligned_cols=98  Identities=10%  Similarity=0.062  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhCCCc
Q 028333           98 LSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY--REAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        98 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~  174 (210)
                      .++...|.+...++ ++++++..+.+++...++      ...++++.+.+....++.  ++++++++++++..      +
T Consensus        72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk------nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d------p  139 (320)
T PLN02789         72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPK------NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD------A  139 (320)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc------chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC------c
Confidence            35666676666666 567777777777775443      455677777777666653  56677777776654      5


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ....++...|.++...|++++|+++++++++.-
T Consensus       140 kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d  172 (320)
T PLN02789        140 KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED  172 (320)
T ss_pred             ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence            566777777777777777777777777777654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=2.2e-06  Score=67.69  Aligned_cols=100  Identities=20%  Similarity=0.322  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ...+++|++.++..+++|..|+.+..++|.+-+.      ...+++..|.++...++|+.|+..|++++++.      |.
T Consensus       256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~------N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~------P~  323 (397)
T KOG0543|consen  256 KLACHLNLAACYLKLKEYKEAIESCNKVLELDPN------NVKALYRRGQALLALGEYDLARDDFQKALKLE------PS  323 (397)
T ss_pred             HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC------chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC------CC
Confidence            3457799999999999999999999999996544      78899999999999999999999999999986      66


Q ss_pred             hHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhh
Q 028333          176 STEAYGAIADCYTELGDLER-AARFYDKYISRL  207 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~-A~~~~~~al~~~  207 (210)
                      +..+...+..|-....++.. ..+.|.++....
T Consensus       324 Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~  356 (397)
T KOG0543|consen  324 NKAARAELIKLKQKIREYEEKEKKMYANMFAKL  356 (397)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            67778888888776665544 467777766543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.49  E-value=1.8e-06  Score=60.16  Aligned_cols=71  Identities=8%  Similarity=0.073  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ...-+..+.+|..++..|++++|...|+-...+.      +.....++++|.|+..+|++++|+..|.+|+.+.++|
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd  102 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA  102 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            4456678899999999999999999999998886      8889999999999999999999999999999877654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.47  E-value=2.3e-06  Score=61.25  Aligned_cols=91  Identities=16%  Similarity=0.122  Sum_probs=70.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q 028333          111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  190 (210)
Q Consensus       111 ~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  190 (210)
                      ++|..+...+.+.++    .........+++++|.++...|++++|+..|++++.+..   +....+.++.++|.+|...
T Consensus        13 ~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~   85 (168)
T CHL00033         13 KTFTIVADILLRILP----TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSN   85 (168)
T ss_pred             cccccchhhhhHhcc----CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHc
Confidence            344555555544332    223344678899999999999999999999999988742   2233567899999999999


Q ss_pred             CCHHHHHHHHHHHHHhhc
Q 028333          191 GDLERAARFYDKYISRLE  208 (210)
Q Consensus       191 g~~~~A~~~~~~al~~~~  208 (210)
                      |++++|+.+|++++.+.+
T Consensus        86 g~~~eA~~~~~~Al~~~~  103 (168)
T CHL00033         86 GEHTKALEYYFQALERNP  103 (168)
T ss_pred             CCHHHHHHHHHHHHHhCc
Confidence            999999999999998644

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.47  E-value=1.1e-05  Score=72.44  Aligned_cols=113  Identities=14%  Similarity=0.046  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC--
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY--  173 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--  173 (210)
                      ...+...+|.++...|++++|...+.+++..++..++......++.++|.++...|++++|..++++++.+....+..  
T Consensus       490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  569 (903)
T PRK04841        490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL  569 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            445667899999999999999999999999999988888778889999999999999999999999999998765432  


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +.....+..+|.++...|++++|...+++++...+
T Consensus       570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            22345577889999999999999999999887643

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=2.4e-06  Score=65.86  Aligned_cols=109  Identities=18%  Similarity=0.273  Sum_probs=97.1

Q ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333           91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      +.....+.-+-.-|+-|+..++|..|...|.+++.  .+..|+...+..|.|.+.+....|+|.+|+.-+.+++.+.   
T Consensus        75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~---  149 (390)
T KOG0551|consen   75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK---  149 (390)
T ss_pred             CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence            44445666677789999999999999999999987  5778888899999999999999999999999999998886   


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                         |....++++=|.|+.++..+++|..|++..+.+.
T Consensus       150 ---P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  150 ---PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             ---cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence               7788999999999999999999999999887654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.46  E-value=2.9e-05  Score=59.91  Aligned_cols=64  Identities=13%  Similarity=0.064  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      ++..|..++..+....+.++|...+++|++..      +....+-..+|+++...|+|++|++.++.+++
T Consensus       179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e  242 (389)
T COG2956         179 IAQFYCELAQQALASSDVDRARELLKKALQAD------KKCVRASIILGRVELAKGDYQKAVEALERVLE  242 (389)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC------ccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence            33344444444444445555555555554433      33333444555555555555555555555544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.46  E-value=5.6e-06  Score=67.95  Aligned_cols=144  Identities=13%  Similarity=0.175  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 028333           42 QRRGELQRVNEQLRQINAALR-RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEF  120 (210)
Q Consensus        42 ~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~  120 (210)
                      ++..+.-+.+..|........ ...++...++++..-              ++.  ..++..+|..|...|.-.+|+.++
T Consensus       313 kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--------------P~N--leaLmaLAVSytNeg~q~~Al~~L  376 (579)
T KOG1125|consen  313 KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD--------------PTN--LEALMALAVSYTNEGLQNQALKML  376 (579)
T ss_pred             hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--------------Ccc--HHHHHHHHHHHhhhhhHHHHHHHH
Confidence            444555566666766666555 344455566666543              332  335777888888877777777766


Q ss_pred             HHHHHHH--------------------------------------HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333          121 KAALELA--------------------------------------QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM  162 (210)
Q Consensus       121 ~~al~l~--------------------------------------~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~  162 (210)
                      ++=+...                                      ...+. ...+++...||.+|...|+|++|+++|+.
T Consensus       377 ~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LGVLy~ls~efdraiDcf~~  455 (579)
T KOG1125|consen  377 DKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLGVLYNLSGEFDRAVDCFEA  455 (579)
T ss_pred             HHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence            5443222                                      11111 12456788999999999999999999999


Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       163 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      |+...      |.....|+.+|.++..-.+.++|+..|.+|+++-+
T Consensus       456 AL~v~------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP  495 (579)
T KOG1125|consen  456 ALQVK------PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP  495 (579)
T ss_pred             HHhcC------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence            98875      88889999999999999999999999999998755

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.45  E-value=2.4e-06  Score=63.76  Aligned_cols=93  Identities=22%  Similarity=0.204  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      +...++.+|.+|-+.|+++.|-.-|.+++++...      .+...+|+|..+...||++.|..++..+....      ..
T Consensus       133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~------~a  200 (257)
T COG5010         133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAPN------EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP------AA  200 (257)
T ss_pred             ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC------CC
Confidence            4556888999999999999999999999999877      77789999999999999999999999985543      44


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHH
Q 028333          176 STEAYGAIADCYTELGDLERAARFY  200 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~  200 (210)
                      ...+..|++.+....|+++.|...-
T Consensus       201 d~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         201 DSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             chHHHHHHHHHHhhcCChHHHHhhc
Confidence            6688999999999999999998754

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.45  E-value=1.7e-06  Score=54.43  Aligned_cols=61  Identities=21%  Similarity=0.256  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  163 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  163 (210)
                      ....++.+|.+++.+|+|++|+..+++ ....+.      .....+.+|.++..+|+|++|+..++++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~------~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS------NPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC------HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC------CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            344677799999999999999999998 554443      4566777899999999999999999875

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.41  E-value=3.5e-05  Score=53.73  Aligned_cols=102  Identities=18%  Similarity=0.073  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      .++...+.........++...+...+++...   ..+++.....+...+|.++...|++++|...|++++...   .+..
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~   82 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPE   82 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHH
Confidence            3444556666666678999998777777665   455666678889999999999999999999999997643   3334


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDK  202 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~  202 (210)
                      ....+.+++|.++...|++++|+..++.
T Consensus        83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   83 LKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            5677899999999999999999999865

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.40  E-value=7.4e-07  Score=53.61  Aligned_cols=55  Identities=27%  Similarity=0.463  Sum_probs=32.4

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          148 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       148 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ...|++++|+..|++++...      |....+++.+|.||...|++++|...+++++...+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~   56 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP   56 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred             hhccCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            34566666666666665554      44556666666666666666666666665555433

...

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.40  E-value=2.6e-05  Score=60.20  Aligned_cols=103  Identities=20%  Similarity=0.262  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      ..+..+..+|..+....+.+.|...+.+|++..++      -..+-.-+|.++...|+|++|++.++.+++-.     ..
T Consensus       178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-----~~  246 (389)
T COG2956         178 EIAQFYCELAQQALASSDVDRARELLKKALQADKK------CVRASIILGRVELAKGDYQKAVEALERVLEQN-----PE  246 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc------ceehhhhhhHHHHhccchHHHHHHHHHHHHhC-----hH
Confidence            34556778899999999999999999999997655      67778889999999999999999999998763     45


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..+.+.-.+..||..+|+.++.+.++.++.+...
T Consensus       247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~  280 (389)
T COG2956         247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT  280 (389)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            5788899999999999999999999999987654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.39  E-value=2.7e-06  Score=51.91  Aligned_cols=58  Identities=26%  Similarity=0.388  Sum_probs=53.2

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333          104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus       104 g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      ..+|...++|++|+..+++++.+.+.      ....+...|.++...|++++|+..++++++..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            56889999999999999999998665      77889999999999999999999999999775

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.39  E-value=1.3e-06  Score=52.55  Aligned_cols=66  Identities=23%  Similarity=0.297  Sum_probs=53.0

Q ss_pred             HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Q 028333          108 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  185 (210)
Q Consensus       108 ~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  185 (210)
                      +..|+|++|+..|++++...+.      ...+...+|.+|...|++++|...+++++...      +.....+.-++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~------~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLERLLKQD------PDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG------TTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------cCHHHHHHHHhc
Confidence            5689999999999999997665      67788999999999999999999999997665      444555544443

...

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.37  E-value=3.8e-06  Score=72.03  Aligned_cols=98  Identities=17%  Similarity=0.240  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      .....++.++..+...|+|.+|+.++......     ........++.+|.||..+|.+++|+.+|++++...      |
T Consensus       412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-----~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~------p  480 (895)
T KOG2076|consen  412 DDVDLYLDLADALTNIGKYKEALRLLSPITNR-----EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA------P  480 (895)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-----ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC------C
Confidence            34446788999999999999999999887662     233346688999999999999999999999998886      7


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKY  203 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  203 (210)
                      ...++...|+.+|..+|+.++|.+.+++.
T Consensus       481 ~~~D~Ri~Lasl~~~~g~~EkalEtL~~~  509 (895)
T KOG2076|consen  481 DNLDARITLASLYQQLGNHEKALETLEQI  509 (895)
T ss_pred             CchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence            77888999999999999999998887764

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.37  E-value=1.1e-06  Score=70.76  Aligned_cols=70  Identities=20%  Similarity=0.279  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      +....+++|+|.+|...|+|++|+..|++++++.....   ....+|+|+|.+|..+|++++|+.++++|++.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a---eA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD---EAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34677899999999999999999999999999988831   12267999999999999999999999999986

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.36  E-value=1.8e-05  Score=56.53  Aligned_cols=102  Identities=13%  Similarity=0.102  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      .-.+.+|+.....|++.+|...|++++.     |........+.+++++.+..+++..|...+++..+....    ...+
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa----~r~p  160 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA----FRSP  160 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc----cCCC
Confidence            3467789999999999999999999987     233335667888999999999999999999998776521    2345


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +.....|++|..+|++.+|...|+.+++..+
T Consensus       161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~yp  191 (251)
T COG4700         161 DGHLLFARTLAAQGKYADAESAFEVAISYYP  191 (251)
T ss_pred             CchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence            6788899999999999999999999988765

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.35  E-value=1.2e-05  Score=64.89  Aligned_cols=91  Identities=20%  Similarity=0.295  Sum_probs=80.5

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  179 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  179 (210)
                      ...++.++...++-.+|++...+++...+.      ....+...+..+...++++.|+...+++.+..      |....+
T Consensus       203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~------d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls------P~~f~~  270 (395)
T PF09295_consen  203 AVLLARVYLLMNEEVEAIRLLNEALKENPQ------DSELLNLQAEFLLSKKKYELALEIAKKAVELS------PSEFET  270 (395)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------chhHHH
Confidence            455789999999999999999999974433      47788889999999999999999999999987      888899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Q 028333          180 YGAIADCYTELGDLERAARFYDK  202 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~  202 (210)
                      |+.|+.+|..+|++++|+..++.
T Consensus       271 W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  271 WYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHhc
Confidence            99999999999999999987764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=3.2e-05  Score=57.75  Aligned_cols=101  Identities=17%  Similarity=0.203  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ....+...=-+...+|+.-+|++...+.++.+..      ..+++..++.+|...|+|++|.-++++.+-+.      |.
T Consensus       119 ~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~------D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~------P~  186 (289)
T KOG3060|consen  119 DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN------DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ------PF  186 (289)
T ss_pred             hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC------CC
Confidence            3334433334455678888999988888887655      67799999999999999999999999998775      77


Q ss_pred             hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhc
Q 028333          176 STEAYGAIADCYTELG---DLERAARFYDKYISRLE  208 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~~~~  208 (210)
                      ....+..+|.+++-+|   +.+.|.++|++++++.+
T Consensus       187 n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  187 NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            8888999999988776   67889999999999875

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.34  E-value=1.1e-05  Score=69.43  Aligned_cols=102  Identities=22%  Similarity=0.318  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ++..++..|+..+..|++++|...+.+++...++      ...+|+.||.+|.++|+.++++..+-.|.-+.      +.
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~------p~  205 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN------PK  205 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC------CC
Confidence            4566788899999999999999999999997666      78899999999999999999999988875553      44


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ....|..++....++|++++|.-||.+|++.-+.
T Consensus       206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~  239 (895)
T KOG2076|consen  206 DYELWKRLADLSEQLGNINQARYCYSRAIQANPS  239 (895)
T ss_pred             ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence            4588999999999999999999999999987654

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.33  E-value=1.5e-06  Score=67.47  Aligned_cols=97  Identities=11%  Similarity=0.153  Sum_probs=85.5

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  179 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  179 (210)
                      .-..|+-|+.+|+|++|+.+|.+++.+.+.      .+..+.|.+.+|+.++.+..|...+..|+.+.      ..-..+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd------~~Y~KA  167 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPH------NPVYHINRALAYLKQKSFAQAEEDCEAAIALD------KLYVKA  167 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCC------CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh------HHHHHH
Confidence            355799999999999999999999997654      56678899999999999999999999999886      445678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          180 YGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      |.+.|..-..+|...+|.+-++.++++-+
T Consensus       168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP  196 (536)
T KOG4648|consen  168 YSRRMQARESLGNNMEAKKDCETVLALEP  196 (536)
T ss_pred             HHHHHHHHHHHhhHHHHHHhHHHHHhhCc
Confidence            99999999999999999999999987644

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=6.9e-05  Score=55.76  Aligned_cols=114  Identities=17%  Similarity=0.107  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      .+..+..-+++|...++|++|...+.+|.+-.+.....++.+.++-..|........+.++.++++++.....+.+....
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt  109 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT  109 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence            45556777899999999999999999999999988889999999999999999999999999999999999998887666


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      -+.++-.-|.+. +..++++|+..|++++.+++++
T Consensus       110 AAmaleKAak~l-env~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen  110 AAMALEKAAKAL-ENVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             HHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHhcc
Confidence            666666666655 4688999999999999988753

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.31  E-value=2.9e-05  Score=69.67  Aligned_cols=116  Identities=17%  Similarity=0.131  Sum_probs=94.2

Q ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333           91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  168 (210)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  168 (210)
                      ++....+.+..++|.+++..|+++.|...+.+++.++...+..  ......+..+|.++...|++++|...+.+++.+..
T Consensus       525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            3444456677889999999999999999999999999876532  22344566789999999999999999999999876


Q ss_pred             HhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          169 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       169 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ..+ ......++..+|.++...|+++.|...++++..+.
T Consensus       605 ~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~  642 (903)
T PRK04841        605 NYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL  642 (903)
T ss_pred             ccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            443 23355678889999999999999999999997753

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=98.31  E-value=2e-05  Score=50.67  Aligned_cols=81  Identities=19%  Similarity=0.248  Sum_probs=68.9

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Q 028333          107 FLRNQDLEKAFTEFKAALELAQNVKDPI---EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  183 (210)
Q Consensus       107 ~~~~~~~~~A~~~~~~al~l~~~~~~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  183 (210)
                      ....++|..|++.+.+..+.........   ....+..++|.++...|++++|+..++++++++++.+|......++..+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~   87 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL   87 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            4568999999999999999988766554   5667888999999999999999999999999999999887777776666


Q ss_pred             HHHH
Q 028333          184 ADCY  187 (210)
Q Consensus       184 g~~y  187 (210)
                      ..+.
T Consensus        88 ~~l~   91 (94)
T PF12862_consen   88 ANLL   91 (94)
T ss_pred             HHHh
Confidence            6543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.31  E-value=4e-06  Score=52.59  Aligned_cols=65  Identities=29%  Similarity=0.456  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +++++|.++...|++++|+..++++++..      +....++..+|.++...|++++|..+++++++..+.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   66 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD   66 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            46789999999999999999999998764      444578999999999999999999999999887653

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.30  E-value=1.8e-05  Score=63.75  Aligned_cols=119  Identities=18%  Similarity=0.181  Sum_probs=94.2

Q ss_pred             HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 028333           64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL  143 (210)
Q Consensus        64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~l  143 (210)
                      .++++.+.+.....+.                +..++..+|..|-+.|+-.+|.+++-.....++.      ..+..-.+
T Consensus       575 aqaie~~~q~~slip~----------------dp~ilskl~dlydqegdksqafq~~ydsyryfp~------nie~iewl  632 (840)
T KOG2003|consen  575 AQAIELLMQANSLIPN----------------DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC------NIETIEWL  632 (840)
T ss_pred             HHHHHHHHHhcccCCC----------------CHHHHHHHHHHhhcccchhhhhhhhhhcccccCc------chHHHHHH
Confidence            4455556665555443                2346788999999999999999998887776554      66677788


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          144 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       144 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      |..|....-.++|+.||+++.-+.      |........++.|+...|+|.+|.+.|......++.|
T Consensus       633 ~ayyidtqf~ekai~y~ekaaliq------p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped  693 (840)
T KOG2003|consen  633 AAYYIDTQFSEKAINYFEKAALIQ------PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED  693 (840)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcC------ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence            988988888999999999996664      7777788889999999999999999999887776653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.28  E-value=7.8e-05  Score=56.60  Aligned_cols=110  Identities=13%  Similarity=0.056  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC---------------C---HHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG---------------K---YREAIK  158 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~---------------~---~~~A~~  158 (210)
                      ..+.+++|.+|+..++|++|+.+++++++..+.   ++....+++.+|.++...+               |   ..+|+.
T Consensus        69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~  145 (243)
T PRK10866         69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR  145 (243)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC---CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence            345789999999999999999999999998775   4456778999998865443               2   245777


Q ss_pred             HHHHHHHHHHHhCCCc-----------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          159 YHSMVLQISEREGEYS-----------GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       159 ~~~~al~~~~~~~~~~-----------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .|++.++...+..-.+           ..+.--+.+|..|...|+|.-|+..++..++.+++
T Consensus       146 ~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~  207 (243)
T PRK10866        146 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD  207 (243)
T ss_pred             HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC
Confidence            8888776653221111           12223456899999999999999999999987653

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.27  E-value=8.6e-06  Score=68.94  Aligned_cols=100  Identities=24%  Similarity=0.239  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHhCCCc
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK--YHSMVLQISEREGEYS  174 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~--~~~~al~~~~~~~~~~  174 (210)
                      +..++..|..+...|++.+|.+.|..|+.+.+.      ...+...+|.++...|+..-|..  .+..++++.      |
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d------p  751 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD------HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD------P  751 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC------C
Confidence            345566788888888899999988888887554      66677888889988887777766  888887775      8


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ....+|+.+|.++..+|+.+.|.++|.-|+++-+
T Consensus       752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence            8889999999999999999999999999998654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.26  E-value=1e-05  Score=62.87  Aligned_cols=104  Identities=23%  Similarity=0.255  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  172 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  172 (210)
                      +..++.-.+.+|..++..|++..|+..|..|++..+.      .-.+++..|.+|...|+-..|+.-+.+++++.     
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~------~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK-----  102 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN------NYQAIFRRATVYLAMGKSKAALQDLSRVLELK-----  102 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch------hHHHHHHHHHHHhhhcCCccchhhHHHHHhcC-----
Confidence            3345556788999999999999999999999995443      67789999999999999999999999999886     


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                       +....+....|.++.++|+++.|..-|++.++.-+
T Consensus       103 -pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~  137 (504)
T KOG0624|consen  103 -PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEP  137 (504)
T ss_pred             -ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC
Confidence             77788899999999999999999999999987544

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=3.3e-05  Score=57.02  Aligned_cols=114  Identities=13%  Similarity=0.185  Sum_probs=90.5

Q ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Q 028333           91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSMVLQISER  169 (210)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~  169 (210)
                      +.+..-+..+...+++| ...+..+|+..++++++++-..|.....+..+..+|.+|-. +.++++|+.+|+++-+..+.
T Consensus        68 ~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~  146 (288)
T KOG1586|consen   68 GSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG  146 (288)
T ss_pred             CCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence            33333343444444454 56699999999999999999998888888888999999965 59999999999999998865


Q ss_pred             hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          170 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       170 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      .........++...+..-..+++|.+|+..|++...
T Consensus       147 ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~  182 (288)
T KOG1586|consen  147 EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVAR  182 (288)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444556788888888899999999999988654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.24  E-value=1e-05  Score=64.72  Aligned_cols=97  Identities=14%  Similarity=0.131  Sum_probs=74.8

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Q 028333          104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  183 (210)
Q Consensus       104 g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  183 (210)
                      +..+...+++..+.....+++..  .....+....+...+|.++...|++++|...++++++..      +....++..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~------p~~~~~~~~l  154 (355)
T cd05804          83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN------PDDAWAVHAV  154 (355)
T ss_pred             hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCcHHHHHH
Confidence            55555555555555555555543  223344456677889999999999999999999999886      5557889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          184 ADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       184 g~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      |.++...|++++|+.+++++++..+
T Consensus       155 a~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         155 AHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHhhhhccC
Confidence            9999999999999999999988654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.23  E-value=1.4e-05  Score=70.12  Aligned_cols=102  Identities=18%  Similarity=0.167  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-------------VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  163 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~-------------~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  163 (210)
                      +..++.+|.++++.+++..+...  .++.+...             +++......+++.+|.||-++|++++|...++++
T Consensus        65 i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~  142 (906)
T PRK14720         65 ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL  142 (906)
T ss_pred             eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            33456666666666666655543  33333222             1223334568999999999999999999999999


Q ss_pred             HHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       164 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +++.      +..+.+++++|..|... +.++|..++.+|+..+
T Consensus       143 L~~D------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        143 VKAD------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             HhcC------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            9986      77899999999999999 9999999999998764

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=98.23  E-value=3.1e-05  Score=57.48  Aligned_cols=101  Identities=21%  Similarity=0.283  Sum_probs=79.6

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CC----CcchH
Q 028333          106 NFLRNQDLEKAFTEFKAALELAQNVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE---GE----YSGST  177 (210)
Q Consensus       106 ~~~~~~~~~~A~~~~~~al~l~~~~~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~----~~~~~  177 (210)
                      -|.....+++|++.|.-|+-.+...+ ++...+..+..+|++|...++.+....++++|++...+.   .+    .....
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~  165 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA  165 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence            44556789999999999998887665 445678899999999999999777777777776666542   11    22356


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      .+.+.+|.++...|++++|..+|.+.+..
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            78999999999999999999999998764

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.23  E-value=1.7e-05  Score=52.79  Aligned_cols=69  Identities=16%  Similarity=0.200  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ...++.+|..+...|++++|+..|+++++..   .+.+....+++.+|.++...|+++.|..+|++++...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p   70 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKY---PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP   70 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence            3567899999999999999999999997653   22234467899999999999999999999999987654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.20  E-value=3e-05  Score=68.34  Aligned_cols=100  Identities=7%  Similarity=0.066  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ......+|..+..+|+|++|++.|+++++..+.      ...++..++.++...+++++|+..++++.+..      +..
T Consensus       102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d------p~~  169 (822)
T PRK14574        102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPT------NPDLISGMIMTQADAGRGGVVLKQATELAERD------PTV  169 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC------cch
Confidence            444556688888899999999999999886544      45566778888888999999999998886654      322


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                       ..+..++.++...++..+|++.++++++..++
T Consensus       170 -~~~l~layL~~~~~~~~~AL~~~ekll~~~P~  201 (822)
T PRK14574        170 -QNYMTLSYLNRATDRNYDALQASSEAVRLAPT  201 (822)
T ss_pred             -HHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence             22355566666677777799999999887664

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.18  E-value=4e-06  Score=43.02  Aligned_cols=32  Identities=31%  Similarity=0.571  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .+|+++|.+|..+|++++|+.+|++++++.++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=5e-06  Score=61.39  Aligned_cols=98  Identities=9%  Similarity=0.067  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      -....|+.++..+.|+.|+..|.+++.+.+.      .+..+.|.+.+|++.++++.......+++++.      +....
T Consensus        12 qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~------~~~Y~tnralchlk~~~~~~v~~dcrralql~------~N~vk   79 (284)
T KOG4642|consen   12 QLKEQGNKCFIPKRYDDAIDCYSRAICINPT------VASYYTNRALCHLKLKHWEPVEEDCRRALQLD------PNLVK   79 (284)
T ss_pred             HHHhccccccchhhhchHHHHHHHHHhcCCC------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC------hHHHH
Confidence            3455688899999999999999999997654      56678899999999999999999999999986      77889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .++.+|.+......|+.|+..+.+|++...
T Consensus        80 ~h~flg~~~l~s~~~~eaI~~Lqra~sl~r  109 (284)
T KOG4642|consen   80 AHYFLGQWLLQSKGYDEAIKVLQRAYSLLR  109 (284)
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            999999999999999999999999987654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.16  E-value=0.00058  Score=45.14  Aligned_cols=108  Identities=20%  Similarity=0.247  Sum_probs=81.7

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH----H--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI----E--EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~----~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      +.-|.-.+.-|.|++|...+.+++++.+++....    .  .+.++..|+.++..+|+|++++....+++......+...
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~   92 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH   92 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence            3345556678899999999999999998864321    1  244667888899999999999999999999997765432


Q ss_pred             -----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          175 -----GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       175 -----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                           ..+.+-++.|..+..+|+.++|+..|+.+-++..
T Consensus        93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMia  131 (144)
T PF12968_consen   93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIA  131 (144)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence                 2345678899999999999999999999987653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>TIGR00540 hemY_coli hemY protein

Probab=98.14  E-value=0.00016  Score=59.16  Aligned_cols=97  Identities=16%  Similarity=0.137  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      .+...|.+...+|+++.|..++.++.+..+.   ..  ..+....+.++...|++++|...+++..+..      |....
T Consensus       120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~---~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~------P~~~~  188 (409)
T TIGR00540       120 NLIKAAEAAQQRGDEARANQHLEEAAELAGN---DN--ILVEIARTRILLAQNELHAARHGVDKLLEMA------PRHKE  188 (409)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---Cc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHH
Confidence            4566789999999999999999999774432   11  1233345899999999999999999998775      77778


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      ++..++.+|...|+++.|.+.+.+..+.
T Consensus       189 ~l~ll~~~~~~~~d~~~a~~~l~~l~k~  216 (409)
T TIGR00540       189 VLKLAEEAYIRSGAWQALDDIIDNMAKA  216 (409)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            9999999999999999999999888754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.14  E-value=4e-05  Score=67.53  Aligned_cols=60  Identities=7%  Similarity=0.101  Sum_probs=33.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          141 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      ..+|.++...|++++|++.|+++++..      |....++..++.+|...++.++|++.++++...
T Consensus       106 lalA~ly~~~gdyd~Aiely~kaL~~d------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~  165 (822)
T PRK14574        106 ASAARAYRNEKRWDQALALWQSSLKKD------PTNPDLISGMIMTQADAGRGGVVLKQATELAER  165 (822)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence            334555555566666666666665543      334455555555566666666666666555443

>PLN02789 farnesyltranstransferase

Probab=98.14  E-value=5.9e-05  Score=59.53  Aligned_cols=102  Identities=13%  Similarity=0.049  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           97 LLSRLKTGKNFLRNQDL--EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~--~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      ..++.+.+.+....++.  ++++.++.+++++.++      ...++.+.|.++...|+++++++++.++++..      +
T Consensus       106 yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d------~  173 (320)
T PLN02789        106 YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED------V  173 (320)
T ss_pred             hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC------C
Confidence            34578888888877764  7788999999986554      67799999999999999999999999999885      6


Q ss_pred             chHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHhhccC
Q 028333          175 GSTEAYGAIADCYTEL---GDL----ERAARFYDKYISRLESD  210 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~---g~~----~~A~~~~~~al~~~~~~  210 (210)
                      ....+++..|.+...+   |.+    +.++.+..+++...+++
T Consensus       174 ~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N  216 (320)
T PLN02789        174 RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRN  216 (320)
T ss_pred             CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCC
Confidence            6678899999988776   333    57888888999876653

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.12  E-value=9.8e-06  Score=41.42  Aligned_cols=33  Identities=24%  Similarity=0.489  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      .+++.+|.+|..+|++++|+.+|++++++.++|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456677777777777777777777777766553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=98.08  E-value=0.0011  Score=47.77  Aligned_cols=107  Identities=14%  Similarity=0.155  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      -.++..+|..|...|+++.|++.|.++.+.+   ..+......+.++-.+....+++.....+..++-......++....
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~  112 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR  112 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence            3467889999999999999999999987743   3455577788899999999999999999999999888776665556


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      ......-|..+...++|..|.+.|-.+...
T Consensus       113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  113 NRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            666777788888899999999998766543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.07  E-value=4e-05  Score=51.50  Aligned_cols=69  Identities=17%  Similarity=0.176  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          138 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .+.+++|.++-..|+.++|+.+|++++..-   -+......++..+|.++..+|++++|+..+++++..++.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g---L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAG---LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            467899999999999999999999997742   123445679999999999999999999999999887654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.06  E-value=5e-05  Score=53.95  Aligned_cols=83  Identities=20%  Similarity=0.326  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhCCCcchHHHHHH
Q 028333          113 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY----------REAIKYHSMVLQISEREGEYSGSTEAYGA  182 (210)
Q Consensus       113 ~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~~  182 (210)
                      |+.|.+.++......+.      .++.+++.|.++..+.++          ++|+.-|++|+.+.      |...+++++
T Consensus         7 FE~ark~aea~y~~nP~------DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~------P~~hdAlw~   74 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPL------DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN------PNKHDALWC   74 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHH
T ss_pred             HHHHHHHHHHHHHhCcH------hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC------CchHHHHHH
Confidence            56666666666664333      688889999888776544          45566666666665      778899999


Q ss_pred             HHHHHHHcCC-----------HHHHHHHHHHHHHhh
Q 028333          183 IADCYTELGD-----------LERAARFYDKYISRL  207 (210)
Q Consensus       183 lg~~y~~~g~-----------~~~A~~~~~~al~~~  207 (210)
                      +|.+|..++.           |++|..+|++|.+.-
T Consensus        75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~  110 (186)
T PF06552_consen   75 LGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED  110 (186)
T ss_dssp             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC
Confidence            9999988665           455556666555543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.06  E-value=7.6e-05  Score=60.45  Aligned_cols=92  Identities=24%  Similarity=0.274  Sum_probs=52.2

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  180 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  180 (210)
                      ...+.++...++.++|.+.+++++.+.+.      ......++|.++.+.|++.+|+..++..+.-.      +..+..|
T Consensus       344 ~~~~~i~~~~nk~~~A~e~~~kal~l~P~------~~~l~~~~a~all~~g~~~eai~~L~~~~~~~------p~dp~~w  411 (484)
T COG4783         344 ELAGDILLEANKAKEAIERLKKALALDPN------SPLLQLNLAQALLKGGKPQEAIRILNRYLFND------PEDPNGW  411 (484)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCC------ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC------CCCchHH
Confidence            33455666666666666666666664332      34455566666666666666666666554332      4455556


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 028333          181 GAIADCYTELGDLERAARFYDKYI  204 (210)
Q Consensus       181 ~~lg~~y~~~g~~~~A~~~~~~al  204 (210)
                      ..+|..|..+|+-.+|...+.+.+
T Consensus       412 ~~LAqay~~~g~~~~a~~A~AE~~  435 (484)
T COG4783         412 DLLAQAYAELGNRAEALLARAEGY  435 (484)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHH
Confidence            666666666655555555444433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.05  E-value=0.00053  Score=53.70  Aligned_cols=105  Identities=20%  Similarity=0.229  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE---------KKAARGLGASLQRQGKYREAIKYHSMVLQI  166 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~---------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  166 (210)
                      -+.+....|.+.+.+|++++|..-|...++-.++.+.....         ...+......+...||+..++++....+++
T Consensus       105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi  184 (504)
T KOG0624|consen  105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI  184 (504)
T ss_pred             HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence            44456778999999999999999999988855543221110         112223334455577788888888777776


Q ss_pred             HHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          167 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       167 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      .      ++.+..+...+.||...|+..+|+.-...+-++
T Consensus       185 ~------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL  218 (504)
T KOG0624|consen  185 Q------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKL  218 (504)
T ss_pred             C------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            5      666777777788888888888887777766544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.05  E-value=7.6e-05  Score=62.65  Aligned_cols=66  Identities=20%  Similarity=0.150  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +.++..+|..+...|++++|...+++|+.+.      + ...+|..+|.++...|++++|.+.|++|+.+.+.
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~------p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE------M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            4677888888889999999999999999885      4 3679999999999999999999999999987653

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.05  E-value=9.2e-05  Score=54.66  Aligned_cols=109  Identities=19%  Similarity=0.167  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-----------KYREAIKYHSMVLQI  166 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~~  166 (210)
                      .+.+.+|.+++..++|+.|+..+++.++..++   ++....+++.+|.+++...           ...+|+..|+..++.
T Consensus        43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~  119 (203)
T PF13525_consen   43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR  119 (203)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999998776   4456778899999876543           234788888888766


Q ss_pred             HHHhCCCc-----------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          167 SEREGEYS-----------GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       167 ~~~~~~~~-----------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..+..-..           ..+.--+.+|..|...|.+..|+..++..++.+++
T Consensus       120 yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~  173 (203)
T PF13525_consen  120 YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD  173 (203)
T ss_dssp             -TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred             CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            53321111           12223466899999999999999999999987664

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.02  E-value=8.8e-05  Score=60.51  Aligned_cols=102  Identities=17%  Similarity=0.173  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---------c--C--------------ChHHHHHHHHHHHHHHHHcCCH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN---------V--K--------------DPIEEKKAARGLGASLQRQGKY  153 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~---------~--~--------------~~~~~~~~~~~lg~~~~~~~~~  153 (210)
                      .....|..+...|+.++|....+++++....         +  +              ..+..+..+..+|.++...+++
T Consensus       265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~  344 (398)
T PRK10747        265 LQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEW  344 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Confidence            4555677777777777777766655541110         0  1              1122345678899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          154 REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       154 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ++|.++|+++++..      |.. ..+..++.++..+|+.++|.++|++++...
T Consensus       345 ~~A~~~le~al~~~------P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        345 QEASLAFRAALKQR------PDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHHHHHhcC------CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            99999999998774      433 456789999999999999999999998765

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.01  E-value=2.2e-05  Score=66.24  Aligned_cols=96  Identities=20%  Similarity=0.258  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      +...+|...+..++|+++..+++.++++.+      .....++++|.+..+.++++.|..+|...+...      |+...
T Consensus       487 A~r~~~~~~~~~~~fs~~~~hle~sl~~np------lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~------Pd~~e  554 (777)
T KOG1128|consen  487 AQRSLALLILSNKDFSEADKHLERSLEINP------LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE------PDNAE  554 (777)
T ss_pred             HHHhhccccccchhHHHHHHHHHHHhhcCc------cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC------CCchh
Confidence            445556666778999999999999988644      377789999999999999999999999998876      88889


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      +++|++..|...|+..+|...+.+|++-
T Consensus       555 aWnNls~ayi~~~~k~ra~~~l~EAlKc  582 (777)
T KOG1128|consen  555 AWNNLSTAYIRLKKKKRAFRKLKEALKC  582 (777)
T ss_pred             hhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence            9999999999999999999999999874

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.00  E-value=1.8e-05  Score=57.83  Aligned_cols=103  Identities=16%  Similarity=0.054  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      ..+..++..|+.|-..|-+..|..-|.+++.+.++      .+.+++.+|..+...|+|+.|.+.|...+++.      |
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD------p  130 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD------P  130 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC------cHHHHHHHHHHHHhcccchHHHHHhhhHhccC------C
Confidence            35667889999999999999999999999998766      88999999999999999999999999999886      6


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..-.++.|.|....--|++..|.+-+.+-....++
T Consensus       131 ~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~  165 (297)
T COG4785         131 TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN  165 (297)
T ss_pred             cchHHHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence            66788999999988899999999988776655444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.99  E-value=0.00043  Score=56.52  Aligned_cols=95  Identities=14%  Similarity=0.082  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  179 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  179 (210)
                      +...+.....+|+++.|..++.++.+..+.   .  ........+..+...|++++|+..+++..+..      |....+
T Consensus       121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~---~--~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~------P~~~~a  189 (398)
T PRK10747        121 YLLAAEAAQQRGDEARANQHLERAAELADN---D--QLPVEITRVRIQLARNENHAARHGVDKLLEVA------PRHPEV  189 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---c--hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCCHHH
Confidence            344566669999999999999999874332   1  11222334889999999999999999997775      777899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          180 YGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      +..++.+|...|++++|.+.+.+..+
T Consensus       190 l~ll~~~~~~~gdw~~a~~~l~~l~k  215 (398)
T PRK10747        190 LRLAEQAYIRTGAWSSLLDILPSMAK  215 (398)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999988877664

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.00014  Score=54.38  Aligned_cols=95  Identities=24%  Similarity=0.233  Sum_probs=76.8

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  180 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  180 (210)
                      ...|..+-..|+|++|+++|+..++      +.+.....+-.--.+...+|+.-+|+.-+.+.++.+      ....++|
T Consensus        90 ~lkam~lEa~~~~~~A~e~y~~lL~------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F------~~D~EAW  157 (289)
T KOG3060|consen   90 KLKAMLLEATGNYKEAIEYYESLLE------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF------MNDQEAW  157 (289)
T ss_pred             HHHHHHHHHhhchhhHHHHHHHHhc------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh------cCcHHHH
Confidence            3457778889999999999999887      333344444444555667888889999999998887      7778999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          181 GAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       181 ~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ..++.+|...|+|++|.-|+++.+=+-
T Consensus       158 ~eLaeiY~~~~~f~kA~fClEE~ll~~  184 (289)
T KOG3060|consen  158 HELAEIYLSEGDFEKAAFCLEELLLIQ  184 (289)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence            999999999999999999999987543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.98  E-value=0.00013  Score=56.03  Aligned_cols=68  Identities=13%  Similarity=0.059  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      ..+++++|.+|+..|++++|+.+|+++++..+   ++.....+++.+|.++..+|++++|...|+++++..
T Consensus       180 ~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        180 PNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            34689999999999999999999999998655   466678899999999999999999999999998775

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.95  E-value=3.4e-05  Score=40.12  Aligned_cols=28  Identities=32%  Similarity=0.597  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333          140 ARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus       140 ~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      +.+||.+|...|+|++|+++|++++.+.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            4555556666666666666666555444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.94  E-value=6.9e-05  Score=66.00  Aligned_cols=106  Identities=8%  Similarity=0.056  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC----
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG----  171 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~----  171 (210)
                      ...++..+...+...+++++|+...+.+++..+.      ....++.+|.++.+.+++..|...  .++.+.....    
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~------~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK------SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc------ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            4456888899999999999999999998885544      788999999999999999888776  6655553221    


Q ss_pred             ---------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          172 ---------EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       172 ---------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                               +......+++.+|.||..+|+.++|...|++++++-++
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~  148 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD  148 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc
Confidence                     22233468899999999999999999999999987654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.93  E-value=0.00037  Score=50.51  Aligned_cols=88  Identities=18%  Similarity=0.265  Sum_probs=75.2

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      ++.+...|..++...+.           -........+.+.|.++..++.++.|+.-+.+++++.+.      ...++..
T Consensus       111 yeeA~skY~~Ale~cp~-----------~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt------y~kAl~R  173 (271)
T KOG4234|consen  111 YEEANSKYQEALESCPS-----------TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT------YEKALER  173 (271)
T ss_pred             HHHHHHHHHHHHHhCcc-----------ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch------hHHHHHH
Confidence            67777888888888774           333456667899999999999999999999999998766      6677888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      .+.+|-+...|+.|++.|++.++..
T Consensus       174 RAeayek~ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  174 RAEAYEKMEKYEEALEDYKKILESD  198 (271)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhC
Confidence            8999999999999999999998875

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.93  E-value=0.00058  Score=46.12  Aligned_cols=87  Identities=20%  Similarity=0.177  Sum_probs=74.6

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      -..+++.|.+++...++                .+.++++.+..+.-+|+.++|+.-++++++++..  .......++..
T Consensus        59 Ld~AlE~F~qal~l~P~----------------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~--~trtacqa~vQ  120 (175)
T KOG4555|consen   59 LDGALELFGQALCLAPE----------------RASAYNNRAQALRLQGDDEEALDDLNKALELAGD--QTRTACQAFVQ  120 (175)
T ss_pred             hHHHHHHHHHHHHhccc----------------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc--cchHHHHHHHH
Confidence            45677889999988875                5778999999999999999999999999998754  24556678899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      .|.+|..+|+.+.|...|+.+.++-
T Consensus       121 Rg~lyRl~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  121 RGLLYRLLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHHHhCchHHHHHhHHHHHHhC
Confidence            9999999999999999999997653

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.93  E-value=0.00015  Score=58.76  Aligned_cols=103  Identities=15%  Similarity=0.126  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      ....+.+..+..++..++++.|...+...+..      .+..+......|.++...++.++|.+.+++++...      |
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~------P  371 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA------QPDNPYYLELAGDILLEANKAKEAIERLKKALALD------P  371 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------C
Confidence            34456788888899999999999988886553      33466677788999999999999999999998876      6


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .......++|.+|.+.|++.+|+..++..+.-.++
T Consensus       372 ~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~  406 (484)
T COG4783         372 NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE  406 (484)
T ss_pred             CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence            66788999999999999999999999888765544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.93  E-value=0.00022  Score=59.32  Aligned_cols=104  Identities=20%  Similarity=0.109  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..-.+..|.++...|+.++|++.|++++......  +......++.+|+++..+.+|++|..+|.+..+..     .+..
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~--~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-----~WSk  339 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEW--KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-----KWSK  339 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH--HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-----ccHH
Confidence            3346778999999999999999999998543332  22345678999999999999999999999987753     4678


Q ss_pred             HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhh
Q 028333          177 TEAYGAIADCYTELGDL-------ERAARFYDKYISRL  207 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~-------~~A~~~~~~al~~~  207 (210)
                      +...+..|.|+...|+.       ++|.+.+.++-...
T Consensus       340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            88899999999999999       77777777765543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.92  E-value=0.00021  Score=59.92  Aligned_cols=100  Identities=16%  Similarity=0.126  Sum_probs=82.0

Q ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333           91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      .+.....++++.+|..|...|++++|+.+.++|++..+.      ..+.|...|.++-..|++.+|.+..+.|-.+.   
T Consensus       188 ~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD---  258 (517)
T PF12569_consen  188 EPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELYMTKARILKHAGDLKEAAEAMDEARELD---  258 (517)
T ss_pred             CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC---
Confidence            344556788899999999999999999999999996554      78899999999999999999999999997664   


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333          171 GEYSGSTEAYGAIADCYTELGDLERAARFYDK  202 (210)
Q Consensus       171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~  202 (210)
                         ...-......+..+...|+.++|......
T Consensus       259 ---~~DRyiNsK~aKy~LRa~~~e~A~~~~~~  287 (517)
T PF12569_consen  259 ---LADRYINSKCAKYLLRAGRIEEAEKTASL  287 (517)
T ss_pred             ---hhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence               22234555667777788999999887643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.91  E-value=2.8e-05  Score=40.48  Aligned_cols=30  Identities=23%  Similarity=0.529  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ++.+||.+|..+|++++|+++|++++.+..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            478999999999999999999999876543

>TIGR00540 hemY_coli hemY protein

Probab=97.91  E-value=0.00015  Score=59.30  Aligned_cols=106  Identities=18%  Similarity=0.240  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC----------------C--------------hHHHH--HHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----------------D--------------PIEEK--KAARGLG  144 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~----------------~--------------~~~~~--~~~~~lg  144 (210)
                      .......|..+...|++++|...++++++..+...                +              .+..+  ..+..+|
T Consensus       263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg  342 (409)
T TIGR00540       263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALG  342 (409)
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence            34566677778888888888877777666332211                0              11123  4566889


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          145 ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +++...|++++|.++|+++.....    .+.. ..+..+|.++..+|+.++|.++|++++...
T Consensus       343 ~l~~~~~~~~~A~~~le~a~a~~~----~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~~~  400 (409)
T TIGR00540       343 QLLMKHGEFIEAADAFKNVAACKE----QLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLGLM  400 (409)
T ss_pred             HHHHHcccHHHHHHHHHHhHHhhc----CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            999999999999999995433221    1333 336689999999999999999999987653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=4.3e-05  Score=60.73  Aligned_cols=112  Identities=20%  Similarity=0.253  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP------IEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      ...+.+++..|.+++...+.+.|+.+|.+++.+.+.-.+.      .......-.-|.-.++.|.|..|-+.|..+|.+.
T Consensus       200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id  279 (486)
T KOG0550|consen  200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID  279 (486)
T ss_pred             cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence            3345567778999999999999999999999987653221      1123355567888899999999999999999987


Q ss_pred             HHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          168 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ..  +...++.+|.+.|.+...+|+..+|+.-++.++++-
T Consensus       280 P~--n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD  317 (486)
T KOG0550|consen  280 PS--NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID  317 (486)
T ss_pred             cc--ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence            43  445678899999999999999999999999998764

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.00079  Score=50.34  Aligned_cols=107  Identities=15%  Similarity=0.158  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc------CChHH------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV------KDPIE------EKKAARGLGASLQRQGKYREAIKYHSM  162 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~------~~~~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~  162 (210)
                      ....++...|+-++..|+|.+|...|..|+...+.+      +++.+      +...+.|.+.|+...|+|-++++....
T Consensus       176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se  255 (329)
T KOG0545|consen  176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE  255 (329)
T ss_pred             hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            445567889999999999999999999999877653      22222      234778999999999999999999999


Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       163 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      .+...      +.+..+|+..|..+..-=+.++|..-|.++++..
T Consensus       256 iL~~~------~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld  294 (329)
T KOG0545|consen  256 ILRHH------PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD  294 (329)
T ss_pred             HHhcC------CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence            87764      8888999999999999999999999999998754

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.83  E-value=6.6e-05  Score=38.35  Aligned_cols=31  Identities=29%  Similarity=0.504  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333          137 KKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus       137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      +.+++++|.+|..+|++++|+.+|++++++.
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            3578889999999999999999999998875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.80  E-value=8e-05  Score=37.98  Aligned_cols=31  Identities=32%  Similarity=0.578  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .+++.+|.+|..+|++++|..+|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4566677777777777777777777766654

...

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.73  E-value=3.6e-05  Score=39.47  Aligned_cols=32  Identities=28%  Similarity=0.517  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHH
Q 028333          160 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA  197 (210)
Q Consensus       160 ~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~  197 (210)
                      |++++++.      |..+.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~------P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELN------PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHC------CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            67787775      888899999999999999999886

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=0.0018  Score=51.08  Aligned_cols=29  Identities=17%  Similarity=0.195  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAAL  124 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al  124 (210)
                      +-....++|.|++.+|+|++|+..|+-+.
T Consensus        56 E~~~~lWia~C~fhLgdY~~Al~~Y~~~~   84 (557)
T KOG3785|consen   56 EDSLQLWIAHCYFHLGDYEEALNVYTFLM   84 (557)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence            34466888999999999999988665443

>PRK15331 chaperone protein SicA; Provisional

Probab=97.71  E-value=0.00048  Score=48.46  Aligned_cols=74  Identities=12%  Similarity=0.108  Sum_probs=62.2

Q ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          130 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       130 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .+.+...-...+..|.-++..|++++|...|+-..-..      +.....+..+|.|+..+++|++|+..|..|..+..+
T Consensus        30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~  103 (165)
T PRK15331         30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN  103 (165)
T ss_pred             hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence            34556677788999999999999999999998765543      566788999999999999999999999998876544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.68  E-value=0.00013  Score=39.72  Aligned_cols=42  Identities=26%  Similarity=0.312  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Q 028333          138 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  185 (210)
Q Consensus       138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  185 (210)
                      .++..+|.+|...|++++|+..|+++++..      |....++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~------P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALD------PDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------cCCHHHHHHhhh
Confidence            356788888999999999999999988875      666777777764

>PRK11906 transcriptional regulator; Provisional

Probab=97.67  E-value=0.0005  Score=55.95  Aligned_cols=100  Identities=12%  Similarity=-0.029  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRN---------QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        97 ~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      +.++..++.++...         .+-.+|.+..++|+++.+.      .+.++..+|.+....++++.|...|++|+.+.
T Consensus       295 a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~  368 (458)
T PRK11906        295 TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV------DGKILAIMGLITGLSGQAKVSHILFEQAKIHS  368 (458)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence            33444555555533         2345666667777775443      67789999999999999999999999999886


Q ss_pred             HHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          168 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                            |..+.+++..|.+....|+.++|.++.++|+.+-+
T Consensus       369 ------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP  403 (458)
T PRK11906        369 ------TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP  403 (458)
T ss_pred             ------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence                  88899999999999999999999999999987654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.65  E-value=0.00019  Score=60.08  Aligned_cols=99  Identities=14%  Similarity=0.128  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      .++..+.-.+..++|.+.+...+..++-.+      ..++++.-.|......|+-++|.++...+++..      .....
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~------eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d------~~S~v   76 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFP------EHGESLAMKGLTLNCLGKKEEAYELVRLGLRND------LKSHV   76 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCC------ccchhHHhccchhhcccchHHHHHHHHHHhccC------cccch
Confidence            466677777888899999888888877333      367778888999999999999999999987743      55668


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ||+.+|.++..-.+|++|++||..|+.+-++
T Consensus        77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d  107 (700)
T KOG1156|consen   77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKD  107 (700)
T ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999887543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.00041  Score=55.51  Aligned_cols=98  Identities=11%  Similarity=0.122  Sum_probs=85.4

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  179 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  179 (210)
                      ++.-|...+..++|..|+.+-+|++++-++      ...++.--|.+..+.++.++|+-.|+.|..+.      |....+
T Consensus       303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La------p~rL~~  370 (564)
T KOG1174|consen  303 WFVHAQLLYDEKKFERALNFVEKCIDSEPR------NHEALILKGRLLIALERHTQAVIAFRTAQMLA------PYRLEI  370 (564)
T ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHhccCcc------cchHHHhccHHHHhccchHHHHHHHHHHHhcc------hhhHHH
Confidence            455567778889999999999999996555      67788889999999999999999999998887      777899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          180 YGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      |..+-.+|...|++.+|...-..++..+++
T Consensus       371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~  400 (564)
T KOG1174|consen  371 YRGLFHSYLAQKRFKEANALANWTIRLFQN  400 (564)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHHhhc
Confidence            999999999999999999988888877654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.63  E-value=0.0002  Score=36.35  Aligned_cols=30  Identities=33%  Similarity=0.515  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333          138 KAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus       138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      .+++.+|.++...|++++|+.+|++++++.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            567888888888888888888888888774

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.61  E-value=0.0059  Score=42.39  Aligned_cols=104  Identities=25%  Similarity=0.348  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----CC-hHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-----KD-PIE----------EKKAARGLGASLQRQGKYREAIKYHSM  162 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-----~~-~~~----------~~~~~~~lg~~~~~~~~~~~A~~~~~~  162 (210)
                      .....|......++.+.++..+.+++.+.+--     .+ .+.          ...+...++..+...|++++|+..+++
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            34445666667788888888888888877531     11 111          122556778888899999999999999


Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       163 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ++...      |..-.++..+-.+|...|+...|+..|+++...+.
T Consensus        88 ~l~~d------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~  127 (146)
T PF03704_consen   88 ALALD------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR  127 (146)
T ss_dssp             HHHHS------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHhcC------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            99986      77788999999999999999999999999877654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.61  E-value=0.00094  Score=50.62  Aligned_cols=69  Identities=22%  Similarity=0.184  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      ...+.+++|.+++.+|+|+.|...|..+.+   +..+.+..+++++.+|.+...+|+-++|...++++++-.
T Consensus       177 ~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         177 TPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             cchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence            345789999999999999999999999887   555677788999999999999999999999999998776

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=0.0017  Score=49.14  Aligned_cols=106  Identities=15%  Similarity=0.145  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ......+|.+..+-||.+.|..+|++.-+....+++-........+.+.+|.-.+++..|...+.+.+...      +..
T Consensus       212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D------~~~  285 (366)
T KOG2796|consen  212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD------PRN  285 (366)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC------CCc
Confidence            33455566777777777777777776666666666655556666666666777777777777776665543      445


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +.+.++.|.|..-.|+...|++..+.++++.+
T Consensus       286 ~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P  317 (366)
T KOG2796|consen  286 AVANNNKALCLLYLGKLKDALKQLEAMVQQDP  317 (366)
T ss_pred             hhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            56667777777777777777777777666554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.58  E-value=0.0021  Score=53.55  Aligned_cols=112  Identities=18%  Similarity=0.175  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHH------------------------HHhcC-ChHHHHHHHHHHHHHHHHcCCH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALEL------------------------AQNVK-DPIEEKKAARGLGASLQRQGKY  153 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l------------------------~~~~~-~~~~~~~~~~~lg~~~~~~~~~  153 (210)
                      ...-.|.+++.+++|++|+..|+..++-                        .+... .+...-+.++|.+.++...|+|
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            4455789999999999999988765321                        11111 1122345779999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhC---CCc------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          154 REAIKYHSMVLQISEREG---EYS------GSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       154 ~~A~~~~~~al~~~~~~~---~~~------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      .+|++.+++++++.++.-   +..      ....+...++.++..+|+.++|...|...+.....|
T Consensus       192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D  257 (652)
T KOG2376|consen  192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD  257 (652)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence            999999999988886531   111      244578889999999999999999999888765443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.58  E-value=0.00067  Score=55.40  Aligned_cols=121  Identities=10%  Similarity=0.067  Sum_probs=84.8

Q ss_pred             HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHhcCCh---------
Q 028333           64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALE-LAQNVKDP---------  133 (210)
Q Consensus        64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-l~~~~~~~---------  133 (210)
                      +...++|.++........-....-...-+.-.....++++|.+++..+.|.-+..+|.+|+. .+.++...         
T Consensus       250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl  329 (696)
T KOG2471|consen  250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL  329 (696)
T ss_pred             HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence            34445677766654432111111111223333455668899999999999999999999995 55443221         


Q ss_pred             --HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q 028333          134 --IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  190 (210)
Q Consensus       134 --~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  190 (210)
                        ......++|.|..|...|++-.|..+|.++....      ..++..|.++|.|....
T Consensus       330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf------h~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF------HRNPRLWLRLAECCIMA  382 (696)
T ss_pred             hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH------hcCcHHHHHHHHHHHHH
Confidence              1234588999999999999999999999999988      45567899999988653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.56  E-value=0.0053  Score=46.30  Aligned_cols=107  Identities=17%  Similarity=0.133  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      +..+++.|...+..|+|++|+.+|++....   .-..+....+...++.++++.++|+.|+.+.++-++..   +.++..
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~---~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly---P~~~n~  107 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSR---HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY---PTHPNA  107 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC---CCCCCh
Confidence            345889999999999999999999987753   33344457899999999999999999999999998775   455777


Q ss_pred             HHHHHHHHHHHHHcC-----C---HHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELG-----D---LERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g-----~---~~~A~~~~~~al~~~~~  209 (210)
                      ..+++..|.++...=     |   ...|...++..+..+++
T Consensus       108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn  148 (254)
T COG4105         108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN  148 (254)
T ss_pred             hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC
Confidence            889999999977632     2   34555566666655543

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=97.55  E-value=0.0038  Score=38.17  Aligned_cols=74  Identities=20%  Similarity=0.329  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  173 (210)
                      +......|.-.+.+.+.++|+..++++++   +..++.....++..+..+|...|+|.+++.+..+=++++++.+++
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~---k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~   79 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALE---KITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP   79 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            33456678778899999999999999998   444567788899999999999999999999999999988776553

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.54  E-value=0.00092  Score=42.91  Aligned_cols=63  Identities=21%  Similarity=0.252  Sum_probs=54.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          147 LQRQGKYREAIKYHSMVLQISEREGEYS---GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       147 ~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ....+||..|++.+.+..+.........   ....+..++|.++...|++++|+..+++|+++.++
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3568999999999999999887665544   45678899999999999999999999999998753

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.52  E-value=0.00025  Score=60.11  Aligned_cols=101  Identities=16%  Similarity=0.194  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      .+...++..|.+..+.++++.|...|..++.+.+.      ...+++|++.+|...++-.+|...+++|++..      .
T Consensus       517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd------~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn------~  584 (777)
T KOG1128|consen  517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD------NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN------Y  584 (777)
T ss_pred             cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC------chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC------C
Confidence            45567899999999999999999999999997554      88899999999999999999999999998875      2


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      .....+-|--.+....|.+++|+..|.+.+++-
T Consensus       585 ~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  585 QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             CCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            333556677777889999999999999887654

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.50  E-value=0.00027  Score=57.60  Aligned_cols=109  Identities=13%  Similarity=0.069  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhCCC
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP----IEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISEREGEY  173 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~~~~~~~  173 (210)
                      .++-.++.++..|+|.+|.+.+... .+.+.-+..    ......++|+|.++++.+.|.-+..+|.+|++ ...++.+.
T Consensus       242 ~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g  320 (696)
T KOG2471|consen  242 ALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG  320 (696)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            4555678888889999888876543 223332321    12455778999999999999999999999996 44443221


Q ss_pred             -----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          174 -----------SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       174 -----------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                                 ...-...||.|..|...|++-.|.++|.++...+.
T Consensus       321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh  366 (696)
T KOG2471|consen  321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH  366 (696)
T ss_pred             CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence                       12346799999999999999999999999998764

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.49  E-value=0.001  Score=49.45  Aligned_cols=96  Identities=22%  Similarity=0.221  Sum_probs=70.8

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-------CChHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-------KDPIE  135 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-------~~~~~  135 (210)
                      .+.+++.|.-++-.+..         ...+....+..++.+|++|..+++-+....++.+|++...+.       .....
T Consensus        93 ~~~ai~~YkLAll~~~~---------~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~  163 (214)
T PF09986_consen   93 LEEAIESYKLALLCAQI---------KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD  163 (214)
T ss_pred             HHHHHHHHHHHHHHHHH---------hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence            45566666666655443         133455678889999999999999777777777777666542       12334


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333          136 EKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      .....+-+|.+++..|++++|..+|.+++...
T Consensus       164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            56688889999999999999999999997654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.47  E-value=0.00092  Score=56.10  Aligned_cols=69  Identities=20%  Similarity=0.147  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .....+++.++..|-..|++++|+.+.+++|+..      |...+.|...|.++...|++.+|.++.+.|..+-.
T Consensus       191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~  259 (517)
T PF12569_consen  191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL  259 (517)
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh
Confidence            3346688999999999999999999999998875      78899999999999999999999999999987643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.46  E-value=0.0086  Score=47.71  Aligned_cols=102  Identities=18%  Similarity=0.210  Sum_probs=75.5

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHH---------Hhc--C--------------ChHHHHHHHHHHHHHHHHcCCHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELA---------QNV--K--------------DPIEEKKAARGLGASLQRQGKYR  154 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~---------~~~--~--------------~~~~~~~~~~~lg~~~~~~~~~~  154 (210)
                      ....+.-+...|++++|.+..+.+++-.         +..  +              ..+..+..+..+|..|+..+.+.
T Consensus       266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~  345 (400)
T COG3071         266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG  345 (400)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH
Confidence            3445666777788888877666555321         100  1              11122357789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          155 EAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       155 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +|..+|+.+++.       ...+..+..+|.++..+|+..+|.+.+++++-...
T Consensus       346 kA~~~leaAl~~-------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~  392 (400)
T COG3071         346 KASEALEAALKL-------RPSASDYAELADALDQLGEPEEAEQVRREALLLTR  392 (400)
T ss_pred             HHHHHHHHHHhc-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence            999999999776       33467789999999999999999999999986543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.46  E-value=0.00051  Score=34.87  Aligned_cols=30  Identities=30%  Similarity=0.571  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333          138 KAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus       138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      .+++.+|.+|..+|++++|+.+|++++++.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            467788888888888888888888888775

...

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.46  E-value=0.017  Score=43.65  Aligned_cols=105  Identities=14%  Similarity=0.083  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-----cCCHH---HHHHHHHHHHHHHHHh
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-----QGKYR---EAIKYHSMVLQISERE  170 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~-----~~~~~---~A~~~~~~al~~~~~~  170 (210)
                      +...++..++..++|+.|+.+.++.+.+.+.   ++....+++-.|.+++.     ..|..   .|+..|++.+.-.   
T Consensus        73 a~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~---~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---  146 (254)
T COG4105          73 AQLDLAYAYYKNGEYDLALAYIDRFIRLYPT---HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---  146 (254)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCCC---CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---
Confidence            5788899999999999999999999998776   45566788888888764     23333   4455555554333   


Q ss_pred             CCCcchH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          171 GEYSGST--------------EAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       171 ~~~~~~~--------------~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .+.+-..              .--..+|+.|.+.|.+.-|+..++..++-.++
T Consensus       147 PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~  199 (254)
T COG4105         147 PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD  199 (254)
T ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence            3322211              22355899999999999999999999886553

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.0015  Score=52.34  Aligned_cols=66  Identities=20%  Similarity=0.241  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  166 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  166 (210)
                      ....++.-.|......++.++|+-.|+.|..+++.      .-++|.++-.+|...|.+.+|....+.+++.
T Consensus       332 r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~  397 (564)
T KOG1174|consen  332 RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY------RLEIYRGLFHSYLAQKRFKEANALANWTIRL  397 (564)
T ss_pred             ccchHHHhccHHHHhccchHHHHHHHHHHHhcchh------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            34556777899999999999999999999887765      5667777777777777777666665555543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.45  E-value=8.5e-05  Score=60.16  Aligned_cols=99  Identities=14%  Similarity=0.142  Sum_probs=86.3

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  179 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  179 (210)
                      .-..|..++.-++|+.|+..|.+|+++-+.      -+..+.+.+.++...+++..|+.-+.++++..      +....+
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpn------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d------P~~~K~   74 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPN------CAIYFANRALAHLKVESFGGALHDALKAIELD------PTYIKA   74 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCc------ceeeechhhhhheeechhhhHHHHHHhhhhcC------chhhhe
Confidence            344577788889999999999999997554      56677788899999999999999999999886      778899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          180 YGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      |+.-|.....++++.+|..-|++.....++|
T Consensus        75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd  105 (476)
T KOG0376|consen   75 YVRRGTAVMALGEFKKALLDLEKVKKLAPND  105 (476)
T ss_pred             eeeccHHHHhHHHHHHHHHHHHHhhhcCcCc
Confidence            9999999999999999999999988777654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.43  E-value=0.0029  Score=43.57  Aligned_cols=71  Identities=23%  Similarity=0.195  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ....++.-|...+..|+|++|+..|+....-   ..-.+....+.+.+|.+|+..+++++|+..+++-+++.++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r---yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~   79 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR---YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT   79 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            4557788999999999999999999988433   3333456688999999999999999999999999988765

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.42  E-value=0.00034  Score=35.20  Aligned_cols=31  Identities=32%  Similarity=0.692  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +++.+|.+|...|++++|+..|++.++.+++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4666777777777777777777776666554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.41  E-value=0.004  Score=52.52  Aligned_cols=105  Identities=14%  Similarity=0.056  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHH
Q 028333           94 KEELLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY--------REAIKYHSM  162 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~--------~~A~~~~~~  162 (210)
                      ..++..++..|..+...++   +..|+..|++|+++.+.      .+.++..++.+|.....+        .++....++
T Consensus       336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~------~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD------FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            3466677888888876655   88999999999997665      566666666666543222        233333333


Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       163 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ++.+    ...+..+.+|..+|..+...|++++|..++++|+++.+
T Consensus       410 a~al----~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p  451 (517)
T PRK10153        410 IVAL----PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM  451 (517)
T ss_pred             hhhc----ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence            3222    12344467899999999999999999999999998754

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=0.0015  Score=49.41  Aligned_cols=106  Identities=15%  Similarity=0.185  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      .+.+-+..+..-.+.|.-....+.+.++     .+++..+.....+|.+.++.||-+.|..+|+.+-+...++++.....
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~-----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~  252 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIK-----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI  252 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHH-----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH
Confidence            3556678888889999999999999988     35556777889999999999999999999999999999888888888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .+..+.+.+|...+++..|...|.+++...+
T Consensus       253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~  283 (366)
T KOG2796|consen  253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDP  283 (366)
T ss_pred             HHHhhhhhheecccchHHHHHHHhhccccCC
Confidence            9999999999999999999999998876543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.37  E-value=0.002  Score=56.78  Aligned_cols=110  Identities=19%  Similarity=0.173  Sum_probs=91.4

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-  170 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-  170 (210)
                      .++.+..++..+|.+|...|.|..|+..|.++..+.+.      .....+..+......|+|.+|++.+.+.+...... 
T Consensus       591 ~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~------s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~  664 (1238)
T KOG1127|consen  591 TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL------SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER  664 (1238)
T ss_pred             CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            34446667889999999999999999999999987544      66677888999999999999999999988766432 


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      .-..+.+.++.+++..+...|=..+|.++++++++.+
T Consensus       665 ~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f  701 (1238)
T KOG1127|consen  665 TGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF  701 (1238)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            2334678889999999999999999999999998865

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.34  E-value=0.00079  Score=52.97  Aligned_cols=87  Identities=24%  Similarity=0.303  Sum_probs=68.1

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Q 028333          106 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  185 (210)
Q Consensus       106 ~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  185 (210)
                      -+....+|+.|+..++-.+.+     +.......-..+|.|++.+|+|++|+..|+-+.+-.      ...+....++|.
T Consensus        31 dfls~rDytGAislLefk~~~-----~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~------~~~~el~vnLAc   99 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNL-----DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD------DAPAELGVNLAC   99 (557)
T ss_pred             HHHhcccchhHHHHHHHhhcc-----chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC------CCCcccchhHHH
Confidence            356678999999887766543     233345667789999999999999999998875522      445678899999


Q ss_pred             HHHHcCCHHHHHHHHHHH
Q 028333          186 CYTELGDLERAARFYDKY  203 (210)
Q Consensus       186 ~y~~~g~~~~A~~~~~~a  203 (210)
                      |++-+|.|.+|...-++|
T Consensus       100 c~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen  100 CKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            999999999998876665

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.33  E-value=0.00055  Score=37.20  Aligned_cols=33  Identities=27%  Similarity=0.424  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      .++..+|.+|..+|++++|++.|+++++..++|
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~   34 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD   34 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            468899999999999999999999999988764

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.32  E-value=0.00025  Score=36.29  Aligned_cols=32  Identities=41%  Similarity=0.578  Sum_probs=28.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 028333          120 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI  157 (210)
Q Consensus       120 ~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~  157 (210)
                      |++++++.+.      .+.+++++|.+|...|++++|+
T Consensus         2 y~kAie~~P~------n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPN------NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCC------CHHHHHHHHHHHHHCcCHHhhc
Confidence            6788887665      7889999999999999999986

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.30  E-value=0.00054  Score=53.40  Aligned_cols=81  Identities=21%  Similarity=0.318  Sum_probs=46.5

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q 028333          112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  191 (210)
Q Consensus       112 ~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  191 (210)
                      ++.+|...|++..+   +.+   ..+..++.++.++..+|+|++|...+++++..      .+..++++.|+..+...+|
T Consensus       182 ~~~~A~y~f~El~~---~~~---~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~------~~~~~d~LaNliv~~~~~g  249 (290)
T PF04733_consen  182 KYQDAFYIFEELSD---KFG---STPKLLNGLAVCHLQLGHYEEAEELLEEALEK------DPNDPDTLANLIVCSLHLG  249 (290)
T ss_dssp             CCCHHHHHHHHHHC---CS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHh---ccC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------ccCCHHHHHHHHHHHHHhC
Confidence            35555555555322   211   23455677777777777777777777776532      2556677777777777777


Q ss_pred             CH-HHHHHHHHHHH
Q 028333          192 DL-ERAARFYDKYI  204 (210)
Q Consensus       192 ~~-~~A~~~~~~al  204 (210)
                      +. +.+.++..+..
T Consensus       250 k~~~~~~~~l~qL~  263 (290)
T PF04733_consen  250 KPTEAAERYLSQLK  263 (290)
T ss_dssp             -TCHHHHHHHHHCH
T ss_pred             CChhHHHHHHHHHH
Confidence            76 44444554433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=97.30  E-value=0.01  Score=45.26  Aligned_cols=93  Identities=19%  Similarity=0.170  Sum_probs=78.6

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q 028333          111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  190 (210)
Q Consensus       111 ~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  190 (210)
                      .+-...++.+++|+..+.+.+...........+|..|+..|++++|+.+|+.+....++.+=......+...+..|+...
T Consensus       152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~  231 (247)
T PF11817_consen  152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL  231 (247)
T ss_pred             chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            45567788999999999988888878888889999999999999999999999888776554455778899999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028333          191 GDLERAARFYDKY  203 (210)
Q Consensus       191 g~~~~A~~~~~~a  203 (210)
                      |+.+..+...-+.
T Consensus       232 ~~~~~~l~~~leL  244 (247)
T PF11817_consen  232 GDVEDYLTTSLEL  244 (247)
T ss_pred             CCHHHHHHHHHHH
Confidence            9998888765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.29  E-value=0.001  Score=58.45  Aligned_cols=97  Identities=21%  Similarity=0.242  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      .+...|..|...+++..|+..|+.++...++      ..+++..+|.+|...|.|..|+..|.++..+.      |....
T Consensus       564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPk------D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr------P~s~y  631 (1238)
T KOG1127|consen  564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPK------DYNLWLGLGEAYPESGRYSHALKVFTKASLLR------PLSKY  631 (1238)
T ss_pred             hhhhccccccCccchhhHHHHHHHHhcCCch------hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC------cHhHH
Confidence            3455788888888899999999998886555      67788899999999999999999999987765      66667


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +-+-.+.....+|+|++|+..+...+...
T Consensus       632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~  660 (1238)
T KOG1127|consen  632 GRFKEAVMECDNGKYKEALDALGLIIYAF  660 (1238)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            78888888999999999999888777644

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.28  E-value=0.0024  Score=53.70  Aligned_cols=99  Identities=13%  Similarity=0.203  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      .-.+|..+|.++...++|++|+.+|..|+.+-+.      ....+..++....++++|+...+.-.+.++..      +.
T Consensus        74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~------~~  141 (700)
T KOG1156|consen   74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR------PS  141 (700)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh------hh
Confidence            3447788999999999999999999999996544      67788999999999999999888888887765      66


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      .-..|...+..++..|++..|.+..+.....
T Consensus       142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t  172 (700)
T KOG1156|consen  142 QRASWIGFAVAQHLLGEYKMALEILEEFEKT  172 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6678999999999999999999877765543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.28  E-value=0.00087  Score=35.62  Aligned_cols=28  Identities=21%  Similarity=0.389  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      ++.++|.+|...|++++|..++++++++
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            4444555555555555555555444443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.22  E-value=0.0013  Score=34.93  Aligned_cols=34  Identities=32%  Similarity=0.485  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333          137 KKAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus       137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      +.+++++|.+|..+|++++|..++++++.+.++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            3467788888888888888888888888777543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.19  E-value=0.0067  Score=50.71  Aligned_cols=98  Identities=19%  Similarity=0.167  Sum_probs=74.0

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------------
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE------------  168 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~------------  168 (210)
                      +..+.|.|+++..++|+..++- ++   +  +   ....+.-.|.+++.+++|++|++.|+..++-..            
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~~-~~---~--~---~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~  153 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLKG-LD---R--L---DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL  153 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHhc-cc---c--c---chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            6789999999999999998872 21   1  1   133566678999999999999999998842110            


Q ss_pred             ------------HhCCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          169 ------------REGEY-SGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       169 ------------~~~~~-~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                                  ..... ...-+.++|.|.++...|+|.+|++.+++|+.+.
T Consensus       154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~  205 (652)
T KOG2376|consen  154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRIC  205 (652)
T ss_pred             HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence                        01111 2255679999999999999999999999996654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.18  E-value=0.0069  Score=49.17  Aligned_cols=91  Identities=19%  Similarity=0.097  Sum_probs=74.4

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHH
Q 028333          105 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA  184 (210)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  184 (210)
                      ..+...++++.|+..+++..+.     +    +.+...++.++...++..+|+..++++++..      +.....+...+
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~-----~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~------p~d~~LL~~Qa  241 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRER-----D----PEVAVLLARVYLLMNEEVEAIRLLNEALKEN------PQDSELLNLQA  241 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhc-----C----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------CCCHHHHHHHH
Confidence            4445567899999998886652     1    2345668999999999999999999998554      55588899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          185 DCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       185 ~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ..+...++++.|++..+++.+..+.+
T Consensus       242 ~fLl~k~~~~lAL~iAk~av~lsP~~  267 (395)
T PF09295_consen  242 EFLLSKKKYELALEIAKKAVELSPSE  267 (395)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            99999999999999999999987653

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.17  E-value=0.007  Score=43.23  Aligned_cols=51  Identities=24%  Similarity=0.300  Sum_probs=33.3

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHH
Q 028333          111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK----YREAIKYHSMVLQIS  167 (210)
Q Consensus       111 ~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~----~~~A~~~~~~al~~~  167 (210)
                      .-+++|+.-|++|+.+.+.      ...+++++|.+|..++.    ..+|..+|++|....
T Consensus        49 ~miedAisK~eeAL~I~P~------~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~F  103 (186)
T PF06552_consen   49 KMIEDAISKFEEALKINPN------KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYF  103 (186)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCc------hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence            3467788888888888776      78899999999977553    334444444444333

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.019  Score=43.18  Aligned_cols=98  Identities=18%  Similarity=0.165  Sum_probs=47.6

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Q 028333          104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  183 (210)
Q Consensus       104 g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  183 (210)
                      |.....+..+.++..+|++|..+....|.+...+.++-..|.+. ...+++.|+..|++++.+....+........+...
T Consensus        78 amLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l-env~Pd~AlqlYqralavve~~dr~~ma~el~gk~  156 (308)
T KOG1585|consen   78 AMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL-ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC  156 (308)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence            34444445555555555555555555554444444444333332 23455555555555555554333323333444455


Q ss_pred             HHHHHHcCCHHHHHHHHHH
Q 028333          184 ADCYTELGDLERAARFYDK  202 (210)
Q Consensus       184 g~~y~~~g~~~~A~~~~~~  202 (210)
                      ++++....++++|-..+.+
T Consensus       157 sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  157 SRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             hhHhhhhHHhhHHHHHHHH
Confidence            5555555555555544433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.09  E-value=0.035  Score=48.67  Aligned_cols=108  Identities=19%  Similarity=0.226  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHH----HHHhcCChHHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALE----LAQNVKDPIEE----------KKAARGLGASLQRQGKYREAIKYHSMV  163 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~----l~~~~~~~~~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~a  163 (210)
                      ..+++.|......++.+.|++||+|+-.    +.+-+.+.+..          ...|..+|...-..|+.+.|+.+|..|
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            3567788888889999999999987532    22222221111          235667788888899999999999887


Q ss_pred             HHHHHH---------------hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          164 LQISER---------------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       164 l~~~~~---------------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      -.....               ..+..+...+.+.+|+-|...|+..+|+.+|.+|..
T Consensus       939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            533321               112233346788999999999999999999988754

>smart00028 TPR Tetratricopeptide repeats

Probab=97.05  E-value=0.0011  Score=32.37  Aligned_cols=30  Identities=27%  Similarity=0.497  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ++.++|.++...|++++|..++++++++.+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            456677777777777777777777766544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.015  Score=45.01  Aligned_cols=60  Identities=22%  Similarity=0.229  Sum_probs=35.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          141 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      .+.|.+.++.|+|+.|+.-|+.+++..      --.+-.-++++.+++..|+++.|+++..+.++.
T Consensus       148 in~gCllykegqyEaAvqkFqaAlqvs------GyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  148 INLGCLLYKEGQYEAAVQKFQAALQVS------GYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             ccchheeeccccHHHHHHHHHHHHhhc------CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            455555566666666666666665553      223344556666666666666666666555543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.99  E-value=0.0016  Score=50.76  Aligned_cols=95  Identities=15%  Similarity=0.196  Sum_probs=63.3

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333          103 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYSGSTEAY  180 (210)
Q Consensus       103 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~  180 (210)
                      .-.++..+++++.|...++..-    +..+...  .+...-+++....|  .+++|...|++..+.      .+.....+
T Consensus       137 ~Vqi~L~~~R~dlA~k~l~~~~----~~~eD~~--l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------~~~t~~~l  204 (290)
T PF04733_consen  137 AVQILLKMNRPDLAEKELKNMQ----QIDEDSI--LTQLAEAWVNLATGGEKYQDAFYIFEELSDK------FGSTPKLL  204 (290)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHH----CCSCCHH--HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC------S--SHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH----hcCCcHH--HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc------cCCCHHHH
Confidence            4567888999999987776643    3333322  22233344444444  689999999986322      23456788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          181 GAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       181 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +.+|.|+..+|++++|...++++++..++
T Consensus       205 ng~A~~~l~~~~~~eAe~~L~~al~~~~~  233 (290)
T PF04733_consen  205 NGLAVCHLQLGHYEEAEELLEEALEKDPN  233 (290)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999875443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=96.95  E-value=0.046  Score=47.30  Aligned_cols=115  Identities=15%  Similarity=0.024  Sum_probs=85.1

Q ss_pred             chHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333           92 PKKEELLSRLKTGKNFL-RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      +.+.++.+.+.+|.+++ ...+++.|..++.|++.++++.+-......+.+-++.++.+.+... |+..+++.++..+..
T Consensus        54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~  132 (608)
T PF10345_consen   54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY  132 (608)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence            34568889999999888 7999999999999999999885555556667777788888887777 999999999988654


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +.........+-....+...+|+..|.+.++......
T Consensus       133 ~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a  169 (608)
T PF10345_consen  133 GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA  169 (608)
T ss_pred             CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence            3333222222221333333379999999998887765

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.88  E-value=0.028  Score=51.52  Aligned_cols=94  Identities=14%  Similarity=0.075  Sum_probs=50.3

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  180 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  180 (210)
                      ..+...|...|++++|.+.+++..+.    +.. ....++..+...|.+.|++++|...|++..+.    +- ......|
T Consensus       653 nsLI~a~~k~G~~eeA~~l~~eM~k~----G~~-pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~-~Pdvvty  722 (1060)
T PLN03218        653 SALVDVAGHAGDLDKAFEILQDARKQ----GIK-LGTVSYSSLMGACSNAKNWKKALELYEDIKSI----KL-RPTVSTM  722 (1060)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCCHHHH
Confidence            33444455555555555555544331    111 12335566666666666666666666655321    11 2233556


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 028333          181 GAIADCYTELGDLERAARFYDKYI  204 (210)
Q Consensus       181 ~~lg~~y~~~g~~~~A~~~~~~al  204 (210)
                      ..+...|...|++++|.+.|++..
T Consensus       723 N~LI~gy~k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        723 NALITALCEGNQLPKALEVLSEMK  746 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH
Confidence            666666666777777777666554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.0073  Score=46.67  Aligned_cols=102  Identities=23%  Similarity=0.249  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER----  169 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~----  169 (210)
                      +.++....+.|-+.++.|+|+.|++-|+.|++...-      .+-.-++++.++++.++|.+|+++..+.++---+    
T Consensus       141 en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy------qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE  214 (459)
T KOG4340|consen  141 ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY------QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE  214 (459)
T ss_pred             CCccchhccchheeeccccHHHHHHHHHHHHhhcCC------CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence            345667889999999999999999999999996432      3445689999999999999999998887643321    


Q ss_pred             --------------hCCC-----cchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028333          170 --------------EGEY-----SGSTEAYGAIADCYTELGDLERAARFYD  201 (210)
Q Consensus       170 --------------~~~~-----~~~~~~~~~lg~~y~~~g~~~~A~~~~~  201 (210)
                                    .++.     .....+++-.+.+++..++++.|.+.+.
T Consensus       215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                          0010     1233456777888999999998887653

>PRK11906 transcriptional regulator; Provisional

Probab=96.84  E-value=0.0088  Score=48.93  Aligned_cols=92  Identities=12%  Similarity=-0.049  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ++.++..+|.+....++++.|...|++|+.+.+.      .+.+++..|.+....|+.++|.+.+++++++.      |.
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn------~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs------P~  404 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD------IASLYYYRALVHFHNEKIEEARICIDKSLQLE------PR  404 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------ch
Confidence            5667888999999999999999999999998776      88999999999999999999999999999885      33


Q ss_pred             -hHHHHHHHHH-HHHHcCCHHHHHHHH
Q 028333          176 -STEAYGAIAD-CYTELGDLERAARFY  200 (210)
Q Consensus       176 -~~~~~~~lg~-~y~~~g~~~~A~~~~  200 (210)
                       .......+.. .|.. .-.+.|+..|
T Consensus       405 ~~~~~~~~~~~~~~~~-~~~~~~~~~~  430 (458)
T PRK11906        405 RRKAVVIKECVDMYVP-NPLKNNIKLY  430 (458)
T ss_pred             hhHHHHHHHHHHHHcC-CchhhhHHHH
Confidence             2222233333 5553 4456666654

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.76  E-value=0.036  Score=50.83  Aligned_cols=59  Identities=10%  Similarity=-0.022  Sum_probs=26.1

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  163 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  163 (210)
                      +..+-..|...|++++|.+.|++..+.    +. ......++.+...|.+.|++++|+..|++.
T Consensus       582 ynaLI~ay~k~G~ldeA~elf~~M~e~----gi-~p~~~tynsLI~ay~k~G~~deAl~lf~eM  640 (1060)
T PLN03218        582 VGALMKACANAGQVDRAKEVYQMIHEY----NI-KGTPEVYTIAVNSCSQKGDWDFALSIYDDM  640 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHc----CC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            333444555555555555555544331    10 011223444444444444444444444443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.75  E-value=0.065  Score=38.68  Aligned_cols=92  Identities=16%  Similarity=0.150  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCH
Q 028333          114 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL  193 (210)
Q Consensus       114 ~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~  193 (210)
                      ++-++.++.-++-++..........++..+|.-|...||.+.|+..|.++.+...   ......+.+.++-++....+++
T Consensus        13 ~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---~~~~~id~~l~~irv~i~~~d~   89 (177)
T PF10602_consen   13 AEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT---SPGHKIDMCLNVIRVAIFFGDW   89 (177)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC---CHHHHHHHHHHHHHHHHHhCCH
Confidence            3444556666666666666677788999999999999999999999999865541   2233677889999999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 028333          194 ERAARFYDKYISRLE  208 (210)
Q Consensus       194 ~~A~~~~~~al~~~~  208 (210)
                      .....+..++-...+
T Consensus        90 ~~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   90 SHVEKYIEKAESLIE  104 (177)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999877654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.0067  Score=45.28  Aligned_cols=86  Identities=22%  Similarity=0.219  Sum_probs=71.3

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      +..+++.|.+++...+.                -+.-+.+-+.+|++..+++.......+++++.+.      .....+.
T Consensus        26 y~~ai~~y~raI~~nP~----------------~~~Y~tnralchlk~~~~~~v~~dcrralql~~N------~vk~h~f   83 (284)
T KOG4642|consen   26 YDDAIDCYSRAICINPT----------------VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN------LVKAHYF   83 (284)
T ss_pred             hchHHHHHHHHHhcCCC----------------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH------HHHHHHH
Confidence            55666778777776553                1223567899999999999999999999998665      8899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      +|.+......|+.|+..++++..+.+..
T Consensus        84 lg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   84 LGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            9999999999999999999998877654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.72  E-value=0.033  Score=40.19  Aligned_cols=94  Identities=29%  Similarity=0.397  Sum_probs=69.5

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc-hHHHHHHHH
Q 028333          106 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIA  184 (210)
Q Consensus       106 ~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~lg  184 (210)
                      ++...++++.|...+.+++...+.   .......+...+..+...++++.|+..+.+++...      +. ....+..++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~~  209 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLN------PDDDAEALLNLG  209 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC------cccchHHHHHhh
Confidence            788888999999988888552210   12244555666666778888888888888887775      33 467788888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          185 DCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       185 ~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .++...++++.|...+..++...+
T Consensus       210 ~~~~~~~~~~~a~~~~~~~~~~~~  233 (291)
T COG0457         210 LLYLKLGKYEEALEYYEKALELDP  233 (291)
T ss_pred             HHHHHcccHHHHHHHHHHHHhhCc
Confidence            888888888888888888877654

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.72  E-value=0.00051  Score=53.55  Aligned_cols=100  Identities=17%  Similarity=0.155  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      .++.-....+.-.+..|.++.|++.|.+++.+.+.      .+..+...+.++..++....|+..+..++++.      +
T Consensus       112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~------~a~l~~kr~sv~lkl~kp~~airD~d~A~ein------~  179 (377)
T KOG1308|consen  112 DQANDKKVQASEALNDGEFDTAIELFTSAIELNPP------LAILYAKRASVFLKLKKPNAAIRDCDFAIEIN------P  179 (377)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhcccccccccCCc------hhhhcccccceeeeccCCchhhhhhhhhhccC------c
Confidence            33444455677788899999999999999996554      78889999999999999999999999999886      5


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      ..+..|--.|.....+|++++|...+..+.++
T Consensus       180 Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  180 DSAKGYKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             ccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence            56677888899999999999999999988764

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.72  E-value=0.0036  Score=31.24  Aligned_cols=30  Identities=27%  Similarity=0.402  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333          138 KAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus       138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      ++++++|.++...|++++|+..|++.++..
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            367888999999999999999999887654

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=0.028  Score=47.75  Aligned_cols=103  Identities=13%  Similarity=0.044  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      .+++.|.-.+...+|..++++|...+....+-.....-+....++..||..+.+.++|.+++++|-+..      +...-
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d------~~~~l  429 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD------RQSPL  429 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc------cccHH
Confidence            457788888999999999999999998776644444457788899999999999999999999997664      33444


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +...+-.+....|+.++|+.+........
T Consensus       430 ~q~~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  430 CQLLMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence            55555556666788899999887665543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.68  E-value=0.021  Score=50.17  Aligned_cols=61  Identities=10%  Similarity=-0.012  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  163 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  163 (210)
                      ..+..+...|...|++++|+..|++....    +-.+ ...++..+..++...|++++|...+...
T Consensus       291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m  351 (697)
T PLN03081        291 VAWNSMLAGYALHGYSEEALCLYYEMRDS----GVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGL  351 (697)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            35666777777788888887777765431    1111 1224455555555555555555555444

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.016  Score=45.42  Aligned_cols=77  Identities=14%  Similarity=0.148  Sum_probs=67.5

Q ss_pred             cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          130 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       130 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      -+.+...+..+-.-|+-|+.-++|..|...|.++|+.  +..|...++.+|.|.|.|...+|+|..|+.-+.+++.+-+
T Consensus        74 E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P  150 (390)
T KOG0551|consen   74 EGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP  150 (390)
T ss_pred             cCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            3566777888888999999999999999999999754  4667778999999999999999999999999999987654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.65  E-value=0.015  Score=48.55  Aligned_cols=88  Identities=19%  Similarity=0.114  Sum_probs=67.5

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q 028333          111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  190 (210)
Q Consensus       111 ~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  190 (210)
                      .+.+.|.+.........|+      ....+...|+.+...|+.++|++.|++++....+  -......+++.+|.++..+
T Consensus       247 ~~~~~a~~lL~~~~~~yP~------s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~~  318 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPN------SALFLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMFQ  318 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHHH
Confidence            3455566666666654443      5667888999999999999999999999853322  1133557899999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 028333          191 GDLERAARFYDKYISR  206 (210)
Q Consensus       191 g~~~~A~~~~~~al~~  206 (210)
                      .+|++|.++|.+..+.
T Consensus       319 ~~w~~A~~~f~~L~~~  334 (468)
T PF10300_consen  319 HDWEEAAEYFLRLLKE  334 (468)
T ss_pred             chHHHHHHHHHHHHhc
Confidence            9999999999988763

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.62  E-value=0.019  Score=48.94  Aligned_cols=90  Identities=12%  Similarity=0.079  Sum_probs=64.9

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Q 028333          106 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD  185 (210)
Q Consensus       106 ~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  185 (210)
                      +-....+++.|...+.++-..+.       ....++.-+..-..+++.++|+..++++++.+      +.....|..+|.
T Consensus       627 le~en~e~eraR~llakar~~sg-------TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f------p~f~Kl~lmlGQ  693 (913)
T KOG0495|consen  627 LEFENDELERARDLLAKARSISG-------TERVWMKSANLERYLDNVEEALRLLEEALKSF------PDFHKLWLMLGQ  693 (913)
T ss_pred             HhhccccHHHHHHHHHHHhccCC-------cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC------CchHHHHHHHhH
Confidence            34445556666666666555322       34456666666677888888888888888876      777788888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhc
Q 028333          186 CYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       186 ~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ++..+++.+.|.+.|...+...+
T Consensus       694 i~e~~~~ie~aR~aY~~G~k~cP  716 (913)
T KOG0495|consen  694 IEEQMENIEMAREAYLQGTKKCP  716 (913)
T ss_pred             HHHHHHHHHHHHHHHHhccccCC
Confidence            99999999999988887776554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.57  E-value=0.11  Score=40.38  Aligned_cols=91  Identities=22%  Similarity=0.275  Sum_probs=69.3

Q ss_pred             HhCCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH-h---CCC----cch
Q 028333          108 LRNQDLEKAFTEFKAALELAQNVK--DPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISER-E---GEY----SGS  176 (210)
Q Consensus       108 ~~~~~~~~A~~~~~~al~l~~~~~--~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~-~---~~~----~~~  176 (210)
                      ..+|+++.|..++.|+-.+.....  .....+..+++.|......+ +++.|..+++++.++... .   ...    ...
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            467899999999999988774221  22346779999999999999 999999999999999644 1   111    135


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHH
Q 028333          177 TEAYGAIADCYTELGDLERAAR  198 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~  198 (210)
                      ..++..++.+|...+.++...+
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~k  105 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEK  105 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHH
Confidence            6678899999999888754444

It is also involved in sporulation [].

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.51  E-value=0.061  Score=35.33  Aligned_cols=105  Identities=11%  Similarity=0.060  Sum_probs=67.2

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH-hCCCcchH
Q 028333          103 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISER-EGEYSGST  177 (210)
Q Consensus       103 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~-~~~~~~~~  177 (210)
                      .|..++..|++-+|++..++.+....+-.+   .+....--|.++..    ..+.+-=..|+.-+++-..+ ..-.+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~---~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A   78 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDES---SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA   78 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCc---hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH
Confidence            366788999999999999998886554222   22444555666654    33444333344433333322 11225567


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ..++.+|.-+.....|+++....++++.+..+|
T Consensus        79 ~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~pd  111 (111)
T PF04781_consen   79 HSLFELASQLGSVKYYKKAVKKAKRGLSVTNPD  111 (111)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhcccCCC
Confidence            888888887777778888888888888776543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.48  E-value=0.031  Score=49.15  Aligned_cols=95  Identities=9%  Similarity=0.004  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      .+..+...|...|+.++|++.|++....    +..+ ...++..+-.++...|+.++|..+|+...+..   +. .....
T Consensus       393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~---g~-~p~~~  463 (697)
T PLN03081        393 SWNALIAGYGNHGRGTKAVEMFERMIAE----GVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENH---RI-KPRAM  463 (697)
T ss_pred             eHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc---CC-CCCcc
Confidence            4555666677777777777777665442    1111 23345555556666666666666666654321   11 11234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH
Q 028333          179 AYGAIADCYTELGDLERAARFYDK  202 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~  202 (210)
                      .|..+...|...|+.++|.+.+++
T Consensus       464 ~y~~li~~l~r~G~~~eA~~~~~~  487 (697)
T PLN03081        464 HYACMIELLGREGLLDEAYAMIRR  487 (697)
T ss_pred             chHhHHHHHHhcCCHHHHHHHHHH
Confidence            455566666666666666665544

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.48  E-value=0.061  Score=42.55  Aligned_cols=83  Identities=19%  Similarity=0.244  Sum_probs=70.0

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      ++.+++.|.+++...+.                ......+.|..|+.++.|..|..-+..|+.+.+.      ...+|..
T Consensus       113 y~EAIDCYs~~ia~~P~----------------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~------Y~KAYSR  170 (536)
T KOG4648|consen  113 YEEAIDCYSTAIAVYPH----------------NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL------YVKAYSR  170 (536)
T ss_pred             hhHHHHHhhhhhccCCC----------------CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH------HHHHHHH
Confidence            67788888888876553                1224577899999999999999999999998776      7788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      .|.+-..+|...+|...++.++++.
T Consensus       171 R~~AR~~Lg~~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  171 RMQARESLGNNMEAKKDCETVLALE  195 (536)
T ss_pred             HHHHHHHHhhHHHHHHhHHHHHhhC
Confidence            9999999999999999999998875

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=96.44  E-value=0.047  Score=47.19  Aligned_cols=100  Identities=17%  Similarity=0.128  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ...+...|..+...++-++|.....++-.+.+-      .+..++-.|.++..+|+..+|...|..|+.+.      |+.
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld------P~h  717 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPL------SASVYYLRGLLLEVKGQLEEAKEAFLVALALD------PDH  717 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC------CCC
Confidence            345667788899999999998888888886544      78899999999999999999999999998886      777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhhc
Q 028333          177 TEAYGAIADCYTELGDLERAAR--FYDKYISRLE  208 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~--~~~~al~~~~  208 (210)
                      ..+...+|.++.+.|+...|..  ....++.+-+
T Consensus       718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp  751 (799)
T KOG4162|consen  718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDP  751 (799)
T ss_pred             cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence            7889999999999999998888  8888877654

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.43  E-value=0.11  Score=42.94  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=92.9

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  171 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  171 (210)
                      ....++.+++..|...+.++++.+|.....+.++++..-+.....+-.+.-+|.+....|+..++.....-+++.+++..
T Consensus       440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~  519 (629)
T KOG2300|consen  440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP  519 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC
Confidence            34456667888899999999999999999999999977666666777888999999999999999999999999999998


Q ss_pred             CCcchHHHHHHHHHHHHHcCC--HHHHHHHHH
Q 028333          172 EYSGSTEAYGAIADCYTELGD--LERAARFYD  201 (210)
Q Consensus       172 ~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~  201 (210)
                      |.+..-.....+-.+|...|+  -+...+.|.
T Consensus       520 Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~  551 (629)
T KOG2300|consen  520 DIPVQLWSSSILTDLYQALGEKGNEMENEAFR  551 (629)
T ss_pred             CchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence            888777778888888888888  555555443

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.43  E-value=0.017  Score=51.80  Aligned_cols=107  Identities=17%  Similarity=0.121  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  179 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  179 (210)
                      ++....++...+.|++|+..|++.-.-+   -+...--++.+.+|.+...+-.-..--+.|.+|+.....+-+.++.+--
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (932)
T PRK13184        478 CLAVPDAFLAEKLYDQALIFYRRIRESF---PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLE  554 (932)
T ss_pred             cccCcHHHHhhHHHHHHHHHHHHHhhcC---CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchH
Confidence            4556677888888888888888765533   3344455678888888776443333336777787777777777887888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          180 YGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      |...|.+|..+|++++-+++|..|++.+++
T Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  584 (932)
T PRK13184        555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQ  584 (932)
T ss_pred             HHhHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999987754

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.41  E-value=0.038  Score=42.98  Aligned_cols=86  Identities=19%  Similarity=0.155  Sum_probs=41.3

Q ss_pred             hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 028333          109 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  187 (210)
Q Consensus       109 ~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  187 (210)
                      ..+..+.|-..|.+|.+      ........|...|..-+. .++.+.|...|+.+++..      +.....+..-...+
T Consensus        13 r~~g~~~aR~vF~~a~~------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f------~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen   13 RTEGIEAARKVFKRARK------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF------PSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHC------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH------TT-HHHHHHHHHHH
T ss_pred             HhCChHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHH
Confidence            33345555555555542      111123344445555333 444444666666666554      33344444444555


Q ss_pred             HHcCCHHHHHHHHHHHHHh
Q 028333          188 TELGDLERAARFYDKYISR  206 (210)
Q Consensus       188 ~~~g~~~~A~~~~~~al~~  206 (210)
                      ...|+.+.|...|++++..
T Consensus        81 ~~~~d~~~aR~lfer~i~~   99 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS   99 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT
T ss_pred             HHhCcHHHHHHHHHHHHHh
Confidence            5566666666666666543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.40  E-value=0.03  Score=47.77  Aligned_cols=96  Identities=17%  Similarity=0.050  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      +++..+..-..+++.++|+..++++++.++.      -...+.-+|.++-+.++.+.|.+.|...++..      |...-
T Consensus       653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c------P~~ip  720 (913)
T KOG0495|consen  653 VWMKSANLERYLDNVEEALRLLEEALKSFPD------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKC------PNSIP  720 (913)
T ss_pred             hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccC------CCCch
Confidence            4555566677788999999999999987665      67788899999999999999999999887665      55666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      .+..++.+-...|+.-+|...++++.-.
T Consensus       721 LWllLakleEk~~~~~rAR~ildrarlk  748 (913)
T KOG0495|consen  721 LWLLLAKLEEKDGQLVRARSILDRARLK  748 (913)
T ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence            7777777777777777777777776543

>PLN03077 Protein ECB2; Provisional

Probab=96.39  E-value=0.049  Score=49.05  Aligned_cols=98  Identities=15%  Similarity=0.164  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..++..+...|...|+.++|+..|++..+.    +..+ ...++..+-.++...|+.++|..+|++..+..   +. ...
T Consensus       554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~----g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---gi-~P~  624 (857)
T PLN03077        554 VVSWNILLTGYVAHGKGSMAVELFNRMVES----GVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKY---SI-TPN  624 (857)
T ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHh---CC-CCc
Confidence            445677788889999999999999886652    2222 23345556667888999999999999875332   22 223


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKY  203 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~a  203 (210)
                      ...|..+...+...|++++|.+.+++.
T Consensus       625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        625 LKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            478899999999999999999998864

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.30  E-value=0.38  Score=37.72  Aligned_cols=112  Identities=13%  Similarity=-0.008  Sum_probs=74.6

Q ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333           91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA-QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      ...+.-+.++..+|.+|-..++|..|...+...-.-. .+-.+.......+..+|.+|...++..+|..+..++--....
T Consensus        97 sfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~  176 (399)
T KOG1497|consen   97 SFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE  176 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc
Confidence            3445566678999999999999999887663221111 111122334557788999999999999999998887544433


Q ss_pred             hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333          170 EGEYSGSTEAYGAIADCYTELGDLERAARFYDK  202 (210)
Q Consensus       170 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~  202 (210)
                      ..+.......-..-|++....++|-+|...|-+
T Consensus       177 ~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYye  209 (399)
T KOG1497|consen  177 SSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYE  209 (399)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444455567777778888777776644

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.29  E-value=0.2  Score=41.51  Aligned_cols=107  Identities=14%  Similarity=0.042  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH
Q 028333           93 KKEELLSRLKTGKN-FLRNQDLEKAFTEFKAALELAQNVKDP-IEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISER  169 (210)
Q Consensus        93 ~~~~~~~~~~~g~~-~~~~~~~~~A~~~~~~al~l~~~~~~~-~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~  169 (210)
                      ...++...+.+|.+ +...++++.|..++++|+.+.+.++.. .....++.-++.+|.... .++.+...+.+++++.+.
T Consensus        42 ~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~  121 (629)
T KOG2300|consen   42 FLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS  121 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Confidence            34577788888864 667999999999999999999988766 456678888999998876 889999999999999753


Q ss_pred             hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028333          170 EGEYSGSTEAYGAIADCYTELGDLERAARFYD  201 (210)
Q Consensus       170 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~  201 (210)
                      ..  -+.-...+.++.++.-..|+..|.+.+.
T Consensus       122 ~p--~wsckllfQLaql~~idkD~~sA~elLa  151 (629)
T KOG2300|consen  122 VP--YWSCKLLFQLAQLHIIDKDFPSALELLA  151 (629)
T ss_pred             Cc--hhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence            22  3345678889999999999999988753

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.17  E-value=0.52  Score=37.93  Aligned_cols=98  Identities=17%  Similarity=0.162  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      -..++..-+..-.++|+++.|-.|..++-+..+.   +  .-....-.+.....+||++.|.....+.++..      +.
T Consensus       117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~---~--~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~------pr  185 (400)
T COG3071         117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD---D--TLAVELTRARLLLNRRDYPAARENVDQLLEMT------PR  185 (400)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC---c--hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC------cC
Confidence            3445666778888999999999999998885332   1  33355667888899999999999999998775      67


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYI  204 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al  204 (210)
                      ...+..-.-.+|...|++........+.-
T Consensus       186 ~~~vlrLa~r~y~~~g~~~~ll~~l~~L~  214 (400)
T COG3071         186 HPEVLRLALRAYIRLGAWQALLAILPKLR  214 (400)
T ss_pred             ChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            77888999999999999988887776543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.15  E-value=0.3  Score=38.72  Aligned_cols=94  Identities=16%  Similarity=0.122  Sum_probs=64.1

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Q 028333          103 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA  182 (210)
Q Consensus       103 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  182 (210)
                      .+......|.|++|.+..++++++.+.      ...+.+..+.++...++..++.++..+.-..=+.  ..-....-|..
T Consensus       181 yaFgL~E~g~y~dAEk~A~ralqiN~~------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--s~mlasHNyWH  252 (491)
T KOG2610|consen  181 YAFGLEECGIYDDAEKQADRALQINRF------DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--SWMLASHNYWH  252 (491)
T ss_pred             HHhhHHHhccchhHHHHHHhhccCCCc------chHHHHHHHHHHHhcchhhhHHHHHHhcccchhh--hhHHHhhhhHH
Confidence            455566778888888888888886554      5566777788888888888887776655222110  00113345777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Q 028333          183 IADCYTELGDLERAARFYDKYI  204 (210)
Q Consensus       183 lg~~y~~~g~~~~A~~~~~~al  204 (210)
                      .|.+|.+-++|+.|++.|++-+
T Consensus       253 ~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  253 TALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HHHhhhcccchhHHHHHHHHHH
Confidence            8888888889999988887543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.14  E-value=0.2  Score=36.01  Aligned_cols=100  Identities=24%  Similarity=0.258  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGA-SLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      +...|..+...+++..++..+.+++.....      ........+. ++...+++++|...+++++....   .......
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~  168 (291)
T COG0457          98 LLNLGLLLEALGKYEEALELLEKALALDPD------PDLAEALLALGALYELGDYEEALELYEKALELDP---ELNELAE  168 (291)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHcCCCC------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CccchHH
Confidence            344455555555555555555555543222      1122233333 66777777777777777744210   0123555


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .+...+..+...++++.|+..+.+++...+
T Consensus       169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  198 (291)
T COG0457         169 ALLALGALLEALGRYEEALELLEKALKLNP  198 (291)
T ss_pred             HHHHhhhHHHHhcCHHHHHHHHHHHHhhCc
Confidence            566666666667777777777777766544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.00  E-value=0.22  Score=41.33  Aligned_cols=88  Identities=18%  Similarity=0.165  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHhc-CC------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028333          113 LEKAFTEFKAALELAQNV-KD------------------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus       113 ~~~A~~~~~~al~l~~~~-~~------------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  173 (210)
                      ..+|..+|+++++.++.. +.                  ......+...+|.|..++|+.++|++.++..++...    .
T Consensus       216 i~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p----~  291 (539)
T PF04184_consen  216 IVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP----N  291 (539)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC----c
Confidence            567777777777766542 11                  111133557899999999999999999999987652    1


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333          174 SGSTEAYGAIADCYTELGDLERAARFYDKYI  204 (210)
Q Consensus       174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  204 (210)
                      .....++.++-.++.+++.|.++...+.+.=
T Consensus       292 ~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  292 LDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             cchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            2356789999999999999999988887754

The molecular function of this protein is uncertain.

>smart00028 TPR Tetratricopeptide repeats

Probab=95.97  E-value=0.012  Score=28.32  Aligned_cols=29  Identities=31%  Similarity=0.570  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333          138 KAARGLGASLQRQGKYREAIKYHSMVLQI  166 (210)
Q Consensus       138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~  166 (210)
                      .++..+|.++...+++++|..++++++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            35678888888889999999888888765

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.97  E-value=0.16  Score=35.13  Aligned_cols=74  Identities=23%  Similarity=0.197  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCCc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-EGEYS  174 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~  174 (210)
                      ...+...++..+...|+++.|+..+.+++.+.+-      .-.++..+-.+|...|+...|+..|++..+...+ .+..|
T Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~------~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P  134 (146)
T PF03704_consen   61 YLDALERLAEALLEAGDYEEALRLLQRALALDPY------DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP  134 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence            3445667888899999999999999999997544      5668888999999999999999999999877763 45544


Q ss_pred             c
Q 028333          175 G  175 (210)
Q Consensus       175 ~  175 (210)
                      .
T Consensus       135 s  135 (146)
T PF03704_consen  135 S  135 (146)
T ss_dssp             -
T ss_pred             C
Confidence            4

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.96  E-value=0.28  Score=37.49  Aligned_cols=53  Identities=15%  Similarity=0.184  Sum_probs=37.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          151 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       151 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +.+..|.-+|++.-+-      .+........++.|+..+|++++|...++.+++...+
T Consensus       187 ek~qdAfyifeE~s~k------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~  239 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEK------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK  239 (299)
T ss_pred             hhhhhHHHHHHHHhcc------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            3456666666555221      2455677888888999999999999998888875443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.89  E-value=0.029  Score=31.75  Aligned_cols=29  Identities=24%  Similarity=0.381  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333          139 AARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      .++.++..+++.|+|++|..+.+..+++.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e   31 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIE   31 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            45666666666666666666666666653

>PRK10941 hypothetical protein; Provisional

Probab=95.87  E-value=0.12  Score=39.95  Aligned_cols=73  Identities=15%  Similarity=0.100  Sum_probs=63.8

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          132 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       132 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      +.......+.++=.+|...++++.|+.+.+..+.+.      |..+.-+...|.+|..+|.+..|..-++..++..++|
T Consensus       176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~------P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d  248 (269)
T PRK10941        176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQFD------PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED  248 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence            445567788999999999999999999999999987      6667778889999999999999999999998877654

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.42  Score=37.08  Aligned_cols=110  Identities=12%  Similarity=0.096  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      ....+..++|..|.+.++.+.+.+...+.+.-+-..+-.....-+-..+|.+|..+.=.++.++..+   .+.++.+|+.
T Consensus       113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~---~~iEkGgDWe  189 (412)
T COG5187         113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVAD---DIIEKGGDWE  189 (412)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHH---HHHHhCCCHH
Confidence            4556788999999999999999999988888777766666555566677887776554444444433   3344555544


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ..-..-...|.-.....++.+|...+-.++..+
T Consensus       190 RrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF  222 (412)
T COG5187         190 RRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF  222 (412)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence            333333444555566678888887776666544

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.78  E-value=0.019  Score=29.99  Aligned_cols=29  Identities=21%  Similarity=0.345  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      ++|..+|.+-.+.++|++|+.-|++|+++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34555666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.73  E-value=0.11  Score=44.47  Aligned_cols=100  Identities=24%  Similarity=0.244  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLR-----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-----KYREAIKYHSMVLQI  166 (210)
Q Consensus        97 ~~~~~~~g~~~~~-----~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~~  166 (210)
                      ..+...+|.+|+.     ..|.++|+.+++.+..-..+. .......+.+.+|.+|....     +++.|+.++.++.. 
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~-a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-  321 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA-ATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-  321 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH-HhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-
Confidence            4455667777764     478999999999998821110 01113446788888888743     67888888888843 


Q ss_pred             HHHhCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 028333          167 SEREGEYSGSTEAYGAIADCYTELG---DLERAARFYDKYIS  205 (210)
Q Consensus       167 ~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~  205 (210)
                             .+..++.+.+|.+|..-.   +..+|.++|..|..
T Consensus       322 -------~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~  356 (552)
T KOG1550|consen  322 -------LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK  356 (552)
T ss_pred             -------cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence                   334577888888887654   56788888887764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.73  E-value=0.18  Score=44.46  Aligned_cols=92  Identities=17%  Similarity=0.273  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHhCCCcch----------HHHH
Q 028333          115 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL----QISEREGEYSGS----------TEAY  180 (210)
Q Consensus       115 ~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al----~~~~~~~~~~~~----------~~~~  180 (210)
                      ++...+.+|+++++. +|....-..|++.+.-....+|.+.|++||+++-    ++.+-+.+.+..          ...|
T Consensus       837 Qs~g~w~eA~eiAE~-~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~  915 (1416)
T KOG3617|consen  837 QSQGMWSEAFEIAET-KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLY  915 (1416)
T ss_pred             HhcccHHHHHHHHhh-ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHH
Confidence            344445566666665 4555567788999999999999999999999862    222222222322          2455


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          181 GAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       181 ~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      .-.|......|+.+-|+.+|..|-+.+
T Consensus       916 ~WWgqYlES~GemdaAl~~Y~~A~D~f  942 (1416)
T KOG3617|consen  916 SWWGQYLESVGEMDAALSFYSSAKDYF  942 (1416)
T ss_pred             HHHHHHHhcccchHHHHHHHHHhhhhh
Confidence            668888889999999999999987754

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.64  E-value=0.33  Score=37.14  Aligned_cols=79  Identities=16%  Similarity=0.136  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC
Q 028333          113 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD  192 (210)
Q Consensus       113 ~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~  192 (210)
                      +..|.-.|++.-+   +   ....+..+++.+.+++.+++|++|...++.++.-.      ...++.+.|+-.+-...|.
T Consensus       189 ~qdAfyifeE~s~---k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd------~~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  189 IQDAFYIFEELSE---K---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD------AKDPETLANLIVLALHLGK  256 (299)
T ss_pred             hhhHHHHHHHHhc---c---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHhCC
Confidence            4455545544322   2   33356788999999999999999999999997653      5557888888888888888


Q ss_pred             HHHHHHHHHHH
Q 028333          193 LERAARFYDKY  203 (210)
Q Consensus       193 ~~~A~~~~~~a  203 (210)
                      ..++...+-.-
T Consensus       257 d~~~~~r~l~Q  267 (299)
T KOG3081|consen  257 DAEVTERNLSQ  267 (299)
T ss_pred             ChHHHHHHHHH
Confidence            77666655433

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.61  E-value=0.22  Score=30.54  Aligned_cols=65  Identities=15%  Similarity=0.145  Sum_probs=51.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          141 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..-|.=++...+.++|+..++++++-.   .+.+....++-.+..+|.+.|+|.+++++--+-+++.+
T Consensus        10 ie~GlkLY~~~~~~~Al~~W~~aL~k~---~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~   74 (80)
T PF10579_consen   10 IEKGLKLYHQNETQQALQKWRKALEKI---TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE   74 (80)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555668889999999999997654   34456677888899999999999999999877777654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.57  E-value=0.34  Score=37.67  Aligned_cols=102  Identities=12%  Similarity=0.044  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           99 SRLKTGKNFLR-NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        99 ~~~~~g~~~~~-~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      ++...|..-+. .++.+.|...|+.+++.+..      ....+..........++.+.|...|++++...   .......
T Consensus        37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l---~~~~~~~  107 (280)
T PF05843_consen   37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPS------DPDFWLEYLDFLIKLNDINNARALFERAISSL---PKEKQSK  107 (280)
T ss_dssp             HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS---SCHHHCH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---CchhHHH
Confidence            45566777555 67777799999999997765      44445555566778999999999999997553   1111134


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..|......-...|+.+......+++.+.++.
T Consensus       108 ~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen  108 KIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            57777888888889999999999999887754

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.45  E-value=0.051  Score=28.38  Aligned_cols=31  Identities=23%  Similarity=0.238  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333          139 AARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      ++..+|.+....++|++|+.-|++++++.++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~   33 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQEE   33 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            4566777777777777777777777777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.44  E-value=0.17  Score=28.62  Aligned_cols=30  Identities=23%  Similarity=0.258  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +++.+|..+..+|+|++|..+.+.++++-|
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP   32 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEP   32 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence            444555555555555555555555554433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.44  E-value=0.18  Score=39.03  Aligned_cols=71  Identities=11%  Similarity=0.081  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhcc
Q 028333          133 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG---DLERAARFYDKYISRLES  209 (210)
Q Consensus       133 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~~~~~  209 (210)
                      .+..+.-+.-||.+|+.+|++..|..-|.+++++.      +.+++.+..+|.++.-+.   ...++...+++++..-+.
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~  225 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA  225 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc
Confidence            44467788999999999999999999999999997      777888888888876653   467888999999876554

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=95.44  E-value=0.86  Score=35.96  Aligned_cols=108  Identities=13%  Similarity=0.122  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..+..++|..|++.|+-+.|.+.+.+..+-.-..|......-....+|..|....=..+.   .++|-.+.++.+|+...
T Consensus       104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~---iekak~liE~GgDWeRr  180 (393)
T KOG0687|consen  104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTES---IEKAKSLIEEGGDWERR  180 (393)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHH---HHHHHHHHHhCCChhhh
Confidence            446789999999999999999999998887777777766676777888888755433333   34444445556665544


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      -..-..-|.-.....+|++|...|-.++..+
T Consensus       181 NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF  211 (393)
T KOG0687|consen  181 NRLKVYQGLYCMSVRNFKEAADLFLDSVSTF  211 (393)
T ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence            4445556666667789999998887776654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.32  E-value=0.51  Score=31.58  Aligned_cols=104  Identities=13%  Similarity=0.108  Sum_probs=70.5

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH---H--HH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI---E--EK  137 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~---~--~~  137 (210)
                      ++.+...+.+++.....   ++..+ ..+..--++.+.-.++..+..+|+|++++....+++..+.+.+.-.   .  -.
T Consensus        25 ~~eAa~s~r~AM~~srt---iP~eE-aFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI  100 (144)
T PF12968_consen   25 YEEAAASCRKAMEVSRT---IPAEE-AFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI  100 (144)
T ss_dssp             HHHHHHHHHHHHHHHTT---S-TTS----HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc---CChHh-hcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence            34444556666665432   11111 1455556777788899999999999999999999999998754321   1  13


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333          138 KAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus       138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      .+.++.+.++-..|..++|+..|+++-++..+.
T Consensus       101 aaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER  133 (144)
T PF12968_consen  101 AAVFSRAVALEGLGRKEEALKEFRMAGEMIAER  133 (144)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            366788999999999999999999998887543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.25  E-value=1.8  Score=37.59  Aligned_cols=111  Identities=10%  Similarity=0.050  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ...+.+-++.++...+... |.....+.++.++..+.........+-....+...+|+..|++.++.....+...++...
T Consensus        99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~  177 (608)
T PF10345_consen   99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV  177 (608)
T ss_pred             HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence            4555666799999888887 999999999999886555443333332233333348999999999999999987777666


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ...+....|.+....+..+.+++..+++....
T Consensus       178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~  209 (608)
T PF10345_consen  178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQA  209 (608)
T ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Confidence            77777888888888888888988888886543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=95.22  E-value=0.37  Score=39.01  Aligned_cols=109  Identities=11%  Similarity=-0.042  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      .++.+...|-..++...--..+..-+..+.-..|....+...+.+=+.|...+.|++|-....++.--  +.......+.
T Consensus       171 ~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~p--e~~snne~AR  248 (493)
T KOG2581|consen  171 LYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYP--EAASNNEWAR  248 (493)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCc--cccccHHHHH
Confidence            45556666666666555444455544444333466667777777788888888888887777666311  1111124566


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..+.+|.+-.-+++|..|.+++-+|+...++
T Consensus       249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence            6788888888888888888888888776553

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.19  E-value=0.18  Score=43.14  Aligned_cols=93  Identities=29%  Similarity=0.400  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHh
Q 028333           99 SRLKTGKNFLRNQ-----DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG---KYREAIKYHSMVLQISERE  170 (210)
Q Consensus        99 ~~~~~g~~~~~~~-----~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~  170 (210)
                      +.+.+|.+|....     +++.|..+|.++-+.-        ...+.+.+|.++....   ++.+|..+|..|.+     
T Consensus       290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-----  356 (552)
T KOG1550|consen  290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-----  356 (552)
T ss_pred             cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-----
Confidence            3566888888743     7788999999887732        4567888999988755   67899999999932     


Q ss_pred             CCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 028333          171 GEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISRL  207 (210)
Q Consensus       171 ~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~  207 (210)
                         .+...+.+++|.||..    .-+.++|..+|.++-+.-
T Consensus       357 ---~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  357 ---AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             ---cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence               5667899999999976    247899999999987653

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=95.15  E-value=0.44  Score=36.32  Aligned_cols=69  Identities=13%  Similarity=0.045  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  163 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  163 (210)
                      ........+|..|+..|+|++|..+|+.+....++-+=.......+..+-.|+...|+.+..+.+.-+.
T Consensus       176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            344456789999999999999999999998888876666667778889999999999999877766443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.13  E-value=0.35  Score=36.01  Aligned_cols=69  Identities=17%  Similarity=0.138  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          134 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       134 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ...+..++..|..|-..|-..-|.-.|.+++.+.      |..+.+++.+|.-+...|+|+-|.+.|+..+++.+
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp  130 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIR------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP  130 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC
Confidence            3356677788888888888888888899998876      88899999999999999999999999998887654

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=95.12  E-value=0.15  Score=46.73  Aligned_cols=111  Identities=14%  Similarity=0.079  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hCC
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER--EGE  172 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~  172 (210)
                      +..+..++.++...+++++|+.+-.++.-+.++.  .+++.....+.+++...+..++...|+..+.++..+..-  ..+
T Consensus       973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~ 1052 (1236)
T KOG1839|consen  973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGED 1052 (1236)
T ss_pred             HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCC
Confidence            3455778999999999999999999999988875  467778889999999999999999999999998776532  235


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      .|..+....+++.++...++++.|+.+.+.|.++.
T Consensus      1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            67777888999999999999999999999998743

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.10  E-value=0.06  Score=45.45  Aligned_cols=95  Identities=18%  Similarity=0.181  Sum_probs=77.2

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Q 028333          104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  183 (210)
Q Consensus       104 g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  183 (210)
                      |..+...|+...|+..+..|+...+.     .......+++.+....+-...|-..+.+++.+.      ...+..++.+
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~-----~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~------~sepl~~~~~  682 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPL-----QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN------SSEPLTFLSL  682 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChh-----hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc------ccCchHHHhc
Confidence            55566789999999999999886543     233466789999988888888999999998875      3345678999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          184 ADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       184 g~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      |+.|..+.+.++|++.+++|++..++
T Consensus       683 g~~~l~l~~i~~a~~~~~~a~~~~~~  708 (886)
T KOG4507|consen  683 GNAYLALKNISGALEAFRQALKLTTK  708 (886)
T ss_pred             chhHHHHhhhHHHHHHHHHHHhcCCC
Confidence            99999999999999999999987654

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.10  E-value=0.78  Score=35.65  Aligned_cols=97  Identities=21%  Similarity=0.246  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-------KYREAIKYHSMVLQ  165 (210)
Q Consensus        97 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-------~~~~A~~~~~~al~  165 (210)
                      ..+.+.+|..|..    ..++.+|..+|.++....    +... ..+...+|..|..-.       +..+|..+|.++-.
T Consensus       109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g----~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~  183 (292)
T COG0790         109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG----NVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE  183 (292)
T ss_pred             HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC----ChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHH
Confidence            3467778988887    559999999999998842    2211 445777888877642       23368888887744


Q ss_pred             HHHHhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 028333          166 ISEREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  206 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~  206 (210)
                      .        ....+..++|.+|..    ..++++|..||.+|-+.
T Consensus       184 ~--------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~  220 (292)
T COG0790         184 L--------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ  220 (292)
T ss_pred             h--------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence            3        356889999998865    34899999999998653

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.08  E-value=0.69  Score=33.76  Aligned_cols=100  Identities=15%  Similarity=0.081  Sum_probs=68.9

Q ss_pred             HHHHHHHHhCCCHH---HHHHHHHHHHHHHHhc---------------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333          101 LKTGKNFLRNQDLE---KAFTEFKAALELAQNV---------------KDPIEEKKAARGLGASLQRQGKYREAIKYHSM  162 (210)
Q Consensus       101 ~~~g~~~~~~~~~~---~A~~~~~~al~l~~~~---------------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~  162 (210)
                      ...|+-|++..+.+   .|-..|.++++....-               +.+..-..+...++..+...+++++|...++.
T Consensus        35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~  114 (207)
T COG2976          35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ  114 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            33466666655554   5555666666554321               11222233445677888899999999999999


Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333          163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY  203 (210)
Q Consensus       163 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  203 (210)
                      ++....   |....+.+-.++|.+...+|++++|+..++..
T Consensus       115 ~l~~t~---De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976         115 ALAQTK---DENLKALAALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HHccch---hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            975543   33556778899999999999999999887643

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.00  E-value=0.96  Score=32.97  Aligned_cols=93  Identities=16%  Similarity=0.217  Sum_probs=71.9

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Q 028333          103 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA  182 (210)
Q Consensus       103 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  182 (210)
                      ++....+.-|.+.......+.+++++.       ..-.+.+|......|++.+|...|++++.     +-.-..+..+..
T Consensus        62 ~~~a~~q~ldP~R~~Rea~~~~~~ApT-------vqnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLg  129 (251)
T COG4700          62 LLMALQQKLDPERHLREATEELAIAPT-------VQNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLG  129 (251)
T ss_pred             HHHHHHHhcChhHHHHHHHHHHhhchh-------HHHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHH
Confidence            344455566777777777777776664       34557789999999999999999999953     223446678899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          183 IADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       183 lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ++...+..+++..|...+++..+..
T Consensus       130 lA~Aqfa~~~~A~a~~tLe~l~e~~  154 (251)
T COG4700         130 LAQAQFAIQEFAAAQQTLEDLMEYN  154 (251)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhhcC
Confidence            9999999999999999999876653

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=94.98  E-value=0.42  Score=38.97  Aligned_cols=102  Identities=19%  Similarity=0.094  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc---CC----hH-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV---KD----PI-----EEKKAARGLGASLQRQGKYREAIKYHSMV  163 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~---~~----~~-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  163 (210)
                      ...+.+.-|..++.+++|..|...|..+++++.+.   +.    ..     ......-.+..||...++.+-|+....+.
T Consensus       175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs  254 (569)
T PF15015_consen  175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS  254 (569)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence            44556777888999999999999999999999762   11    11     11224457899999999999999999999


Q ss_pred             HHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333          164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY  203 (210)
Q Consensus       164 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  203 (210)
                      |-+.      |....-+...|.|+..+.+|.+|...+.-+
T Consensus       255 I~ln------P~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  255 INLN------PSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             hhcC------cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8764      656667888999999999999998776544

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.95  E-value=0.11  Score=44.33  Aligned_cols=72  Identities=17%  Similarity=0.189  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +...+.+-+.-++...+|..+++.|+.+++...........+....+++.||..+.+.++|.+++++|-+.-
T Consensus       353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d  424 (872)
T KOG4814|consen  353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD  424 (872)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence            344666778888999999999999999998875444444568889999999999999999999999996643

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.77  E-value=2.2  Score=38.06  Aligned_cols=91  Identities=15%  Similarity=0.084  Sum_probs=77.2

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHH
Q 028333          102 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  181 (210)
Q Consensus       102 ~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  181 (210)
                      -.|.+-...++.++|++..+.++...+...... ...++..+|.+..-+|++++|..+..++.++++..+.......+..
T Consensus       463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~~-r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~  541 (894)
T COG2909         463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYRS-RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLL  541 (894)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhcccccchh-hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            347788889999999999999999877643333 4568889999999999999999999999999998887777778888


Q ss_pred             HHHHHHHHcCCH
Q 028333          182 AIADCYTELGDL  193 (210)
Q Consensus       182 ~lg~~y~~~g~~  193 (210)
                      ..+.+..++|+-
T Consensus       542 ~~s~il~~qGq~  553 (894)
T COG2909         542 QQSEILEAQGQV  553 (894)
T ss_pred             HHHHHHHHhhHH
Confidence            899999999943

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.55  E-value=0.19  Score=44.40  Aligned_cols=88  Identities=22%  Similarity=0.246  Sum_probs=55.3

Q ss_pred             hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q 028333          109 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  188 (210)
Q Consensus       109 ~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  188 (210)
                      ..+++.+|+....+.+.-.++      ...+...-|.+..++|.+++|..+++.. ...     ....-..+-.+-.||.
T Consensus        21 d~~qfkkal~~~~kllkk~Pn------~~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~-----~~~D~~tLq~l~~~y~   88 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPN------ALYAKVLKALSLFRLGKGDEALKLLEAL-YGL-----KGTDDLTLQFLQNVYR   88 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHhcCchhHHHHHhhh-ccC-----CCCchHHHHHHHHHHH
Confidence            445666776666666553332      4445555677777888888888555433 221     1123355667777888


Q ss_pred             HcCCHHHHHHHHHHHHHhhc
Q 028333          189 ELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       189 ~~g~~~~A~~~~~~al~~~~  208 (210)
                      .+|++++|...|++++...+
T Consensus        89 d~~~~d~~~~~Ye~~~~~~P  108 (932)
T KOG2053|consen   89 DLGKLDEAVHLYERANQKYP  108 (932)
T ss_pred             HHhhhhHHHHHHHHHHhhCC
Confidence            88888888888888876654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.45  E-value=0.22  Score=41.70  Aligned_cols=97  Identities=14%  Similarity=0.110  Sum_probs=75.3

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---GKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ....|+-.+.......|+..|.+++...+.      ....+.+.+.+++++   |+--.|+.-...|+++.      +..
T Consensus       377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~------~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln------~s~  444 (758)
T KOG1310|consen  377 FKTEGNDGLYESIVSGAISHYSRAIQYVPD------AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLN------PSI  444 (758)
T ss_pred             HHhhccchhhhHHHHHHHHHHHHHhhhccc------hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCC------hHH
Confidence            444565566667788899999999886554      667788888888774   46667888888887764      667


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..+++.|++++.+++++.+|+.+...+...++
T Consensus       445 ~kah~~la~aL~el~r~~eal~~~~alq~~~P  476 (758)
T KOG1310|consen  445 QKAHFRLARALNELTRYLEALSCHWALQMSFP  476 (758)
T ss_pred             HHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence            78999999999999999999999876665554

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.44  E-value=0.067  Score=25.23  Aligned_cols=23  Identities=30%  Similarity=0.320  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 028333          179 AYGAIADCYTELGDLERAARFYD  201 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~  201 (210)
                      +...+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            34555556666666665555543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=94.43  E-value=1.2  Score=38.38  Aligned_cols=111  Identities=16%  Similarity=0.144  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH----------------------------------
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR----------------------------------  141 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~----------------------------------  141 (210)
                      -...+..+|..|...|.+++|-..|++++.-.-++.|.....++|.                                  
T Consensus       247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~  326 (835)
T KOG2047|consen  247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF  326 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence            4456788999999999999999999988865444444322222221                                  


Q ss_pred             -------------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHH
Q 028333          142 -------------------------GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA  196 (210)
Q Consensus       142 -------------------------~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  196 (210)
                                               .+-++-...|++.+-+..|.+|++......-.-....++...|..|...|+.+.|
T Consensus       327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a  406 (835)
T KOG2047|consen  327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA  406 (835)
T ss_pred             HHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence                                     1111222334455556666666544321111112446788899999999999999


Q ss_pred             HHHHHHHHHh
Q 028333          197 ARFYDKYISR  206 (210)
Q Consensus       197 ~~~~~~al~~  206 (210)
                      ...|++|.+.
T Consensus       407 Rvifeka~~V  416 (835)
T KOG2047|consen  407 RVIFEKATKV  416 (835)
T ss_pred             HHHHHHhhcC
Confidence            9999998763

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.43  E-value=0.24  Score=33.88  Aligned_cols=29  Identities=17%  Similarity=0.217  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      -++.+.++.-++.+++|++|+.+.+..++
T Consensus        71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~   99 (149)
T KOG3364|consen   71 RECLYYLAVGHYRLKEYSKSLRYVDALLE   99 (149)
T ss_pred             hhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence            34444455555555555555555544444

>PLN03077 Protein ECB2; Provisional

Probab=94.40  E-value=0.57  Score=42.36  Aligned_cols=101  Identities=16%  Similarity=0.129  Sum_probs=65.7

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------H---
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL------------Q---  165 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al------------~---  165 (210)
                      ..+-..+...|++++|..+|+...+.   .+..+ ....|..+...+.+.|++++|.+.+++.-            .   
T Consensus       593 ~~ll~a~~~~g~v~ea~~~f~~M~~~---~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~  668 (857)
T PLN03077        593 ISLLCACSRSGMVTQGLEYFHSMEEK---YSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACR  668 (857)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHH---hCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence            33345677788888888888876532   22222 23567778888888888888888877631            0   


Q ss_pred             ------H----HHH-hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          166 ------I----SER-EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       166 ------~----~~~-~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                            +    .++ ..-.|.....|..++.+|...|++++|.+..+...+
T Consensus       669 ~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence                  0    000 111244456677888899999999998888876654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=94.36  E-value=0.29  Score=42.75  Aligned_cols=100  Identities=30%  Similarity=0.429  Sum_probs=65.0

Q ss_pred             HHHHHHhCCCHHHHHHHHH------HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------
Q 028333          103 TGKNFLRNQDLEKAFTEFK------AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV-------------  163 (210)
Q Consensus       103 ~g~~~~~~~~~~~A~~~~~------~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-------------  163 (210)
                      .|..|-...++++|+++|+      +++++++- ..+..-...--.+|.-.-+.|+++.|+..|-++             
T Consensus       667 agdlfeki~d~dkale~fkkgdaf~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~a  745 (1636)
T KOG3616|consen  667 AGDLFEKIHDFDKALECFKKGDAFGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGA  745 (1636)
T ss_pred             hhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence            4666777788999998875      45665542 233333344456677777788888877666443             


Q ss_pred             ------HHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333          164 ------LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY  203 (210)
Q Consensus       164 ------l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  203 (210)
                            +.+.....+.......|-.++.-|...|+|+.|.+.|.++
T Consensus       746 kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~  791 (1636)
T KOG3616|consen  746 KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA  791 (1636)
T ss_pred             hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence                  3333333344444455777889999999999998887654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.19  E-value=2  Score=33.52  Aligned_cols=101  Identities=23%  Similarity=0.226  Sum_probs=76.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM---------------VL  164 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~---------------al  164 (210)
                      .+..+.-....+++..|...+..++...++      ...+...++.+|...|+.+.|...+..               -+
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i  210 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPE------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI  210 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcc------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            344566778899999999999999998776      467788899999999999877766654               13


Q ss_pred             HHHHHh-------------CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          165 QISERE-------------GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       165 ~~~~~~-------------~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      ++..+.             ...+....+-+.+|..|...|+.+.|.+.+-..+..
T Consensus       211 ~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         211 ELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            333221             223556678889999999999999999988655543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.17  E-value=1.3  Score=35.23  Aligned_cols=114  Identities=16%  Similarity=0.137  Sum_probs=84.0

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHh-
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISERE-  170 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~~~~-  170 (210)
                      ....+..+...+.+....|+++.|...+.++.........  ..+......+......|+..+|+..++..+. ..... 
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~--~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~  219 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES--LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI  219 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence            4445667888999999999999999999887775432111  1355667778888899999999999988887 22211 


Q ss_pred             --------------------------CCCcchHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhc
Q 028333          171 --------------------------GEYSGSTEAYGAIADCYTEL------GDLERAARFYDKYISRLE  208 (210)
Q Consensus       171 --------------------------~~~~~~~~~~~~lg~~y~~~------g~~~~A~~~~~~al~~~~  208 (210)
                                                ......+.++..+|.-....      ++.+.+...|.++.+..+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~  289 (352)
T PF02259_consen  220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP  289 (352)
T ss_pred             ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence                                      11123566788888888777      889999999999987654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=94.15  E-value=1.9  Score=40.01  Aligned_cols=117  Identities=15%  Similarity=0.076  Sum_probs=94.6

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-K-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      +.......+.+++...+..++...|...+.++..+..-. + +.+..+....+++.++...++++.|+++.+.|....++
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence            445567788889999999999999999998888765432 2 34555667789999999999999999999999997766


Q ss_pred             hCCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          170 EGEY--SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       170 ~~~~--~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ....  ...+.++..+++.+..++++..|....+....++.
T Consensus      1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred             hcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence            5332  23677899999999999999999999988887764

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.13  E-value=0.2  Score=39.20  Aligned_cols=59  Identities=12%  Similarity=0.186  Sum_probs=36.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      .+.-....|+.++|...|+.|+.++      +....++..+|......++.-+|-.+|-+|+.+.
T Consensus       122 ~A~~~~~~Gk~ekA~~lfeHAlala------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis  180 (472)
T KOG3824|consen  122 AAGRSRKDGKLEKAMTLFEHALALA------PTNPQILIEMGQFREMHNEIVEADQCYVKALTIS  180 (472)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhcC------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence            3333445666666666666666665      5556666666666666666666666666666544

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.13  E-value=2.1  Score=33.20  Aligned_cols=110  Identities=16%  Similarity=0.102  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh---c-CC----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333           94 KEELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQN---V-KD----PIEEKKAARGLGASLQRQGKYREAIKYHSMVL  164 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~l~~~---~-~~----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  164 (210)
                      ...+..+++.|...+..+ +++.|..++++++++++.   . ..    ......++..++.+|...+.++.... ..+++
T Consensus        32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l  110 (278)
T PF08631_consen   32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNAL  110 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHH
Confidence            345667899999999999 999999999999999644   1 11    13456688899999999888764333 33344


Q ss_pred             HHHH-HhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          165 QISE-REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       165 ~~~~-~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +..+ +.++++...  +..+-.+.. .++.+.+.+.+.+++.-.
T Consensus       111 ~~l~~e~~~~~~~~--~L~l~il~~-~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen  111 RLLESEYGNKPEVF--LLKLEILLK-SFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HHHHHhCCCCcHHH--HHHHHHHhc-cCChhHHHHHHHHHHHhc
Confidence            4432 233333222  233333333 677788877777776543

It is also involved in sporulation [].

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.10  E-value=0.085  Score=24.85  Aligned_cols=23  Identities=30%  Similarity=0.251  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 028333          139 AARGLGASLQRQGKYREAIKYHS  161 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~  161 (210)
                      +..++|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45566777777777777766554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.07  E-value=2.1  Score=40.22  Aligned_cols=100  Identities=16%  Similarity=0.180  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--------
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG--------  171 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--------  171 (210)
                      +..+..+|-..+++++|.++++..++-+.+      ....+..+|...+.+++-+.|...+++|++...+..        
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKF 1606 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence            444555555666666666666555553332      333444555555555555555555555554442200        


Q ss_pred             ----------------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          172 ----------------------EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       172 ----------------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                                            ..|.+.+.|.-..+.-...|+.+.+...|+++++
T Consensus      1607 AqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred             HHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence                                  1144445555555555556666666666666654

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=94.01  E-value=2.2  Score=32.87  Aligned_cols=102  Identities=14%  Similarity=0.092  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhCCCcchH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR-EAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      .++.-+..+...+++..|.+...-.++.....+.+.. .....++..+....+.-+ .-..+.+++++..+..+...+.+
T Consensus        12 LL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~-~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp   90 (260)
T PF04190_consen   12 LLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVD-EESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP   90 (260)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---S-HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred             HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence            4566678888999999999988877887777544433 224467777776665433 46677788888884455556788


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 028333          178 EAYGAIADCYTELGDLERAARFYD  201 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~  201 (210)
                      ..+..+|..|.+.|++.+|..+|-
T Consensus        91 ~LH~~~a~~~~~e~~~~~A~~Hfl  114 (260)
T PF04190_consen   91 ELHHLLAEKLWKEGNYYEAERHFL  114 (260)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHH
Confidence            999999999999999999999884

; PDB: 3LKU_E 2WPV_G.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=93.94  E-value=0.16  Score=39.70  Aligned_cols=81  Identities=30%  Similarity=0.283  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  172 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  172 (210)
                      ...++....+.|.-....|+.++|...|+.|+.++++      .+.++..+|...-.-++.-+|-.+|-+|+.+.     
T Consensus       112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~------~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis-----  180 (472)
T KOG3824|consen  112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPT------NPQILIEMGQFREMHNEIVEADQCYVKALTIS-----  180 (472)
T ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC------CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC-----
Confidence            3456667778888888999999999999999999887      78889999999988899999999999998775     


Q ss_pred             CcchHHHHHHHHH
Q 028333          173 YSGSTEAYGAIAD  185 (210)
Q Consensus       173 ~~~~~~~~~~lg~  185 (210)
                       +....++.+.++
T Consensus       181 -P~nseALvnR~R  192 (472)
T KOG3824|consen  181 -PGNSEALVNRAR  192 (472)
T ss_pred             -CCchHHHhhhhc
Confidence             555555555443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.91  E-value=1.6  Score=30.88  Aligned_cols=87  Identities=18%  Similarity=0.069  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      -...+......-...++.+.+...+...--+-++      ....-..-|+.+...|++.+|+..|+....-      .+.
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------~~~   76 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE------FPELDLFDGWLHIVRGDWDDALRLLRELEER------APG   76 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------CCC
Confidence            3445667777777888888888777655444343      5666777899999999999999999987332      356


Q ss_pred             hHHHHHHHHHHHHHcCCHH
Q 028333          176 STEAYGAIADCYTELGDLE  194 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~  194 (210)
                      .+.+---++.|+..+||.+
T Consensus        77 ~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   77 FPYAKALLALCLYALGDPS   95 (160)
T ss_pred             ChHHHHHHHHHHHHcCChH
Confidence            6677778888988888864

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=93.90  E-value=2.7  Score=33.52  Aligned_cols=96  Identities=14%  Similarity=0.086  Sum_probs=78.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 028333          110 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  189 (210)
Q Consensus       110 ~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  189 (210)
                      -+..+.-+..+...++-+.+-+-.......-..+...|+..++|.+|+......++..++.+|.......+..-..+|+.
T Consensus       101 ~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~  180 (411)
T KOG1463|consen  101 DDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHA  180 (411)
T ss_pred             CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHH
Confidence            34455666677777776666444454555667889999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHH
Q 028333          190 LGDLERAARFYDKYIS  205 (210)
Q Consensus       190 ~g~~~~A~~~~~~al~  205 (210)
                      +.+..+|...+..|..
T Consensus       181 l~Nl~KakasLTsART  196 (411)
T KOG1463|consen  181 LRNLPKAKASLTSART  196 (411)
T ss_pred             HhcchhHHHHHHHHHH
Confidence            9999999988876644

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=93.78  E-value=0.061  Score=44.15  Aligned_cols=98  Identities=16%  Similarity=0.237  Sum_probs=74.1

Q ss_pred             HHHHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 028333           61 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  140 (210)
Q Consensus        61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~  140 (210)
                      ..+..+++.|.+++..-+.                .+...-+.+..+...++|..|+.-+.+++++.+.      ...+|
T Consensus        18 ~~fd~avdlysKaI~ldpn----------------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~------~~K~Y   75 (476)
T KOG0376|consen   18 KVFDVAVDLYSKAIELDPN----------------CAIYFANRALAHLKVESFGGALHDALKAIELDPT------YIKAY   75 (476)
T ss_pred             chHHHHHHHHHHHHhcCCc----------------ceeeechhhhhheeechhhhHHHHHHhhhhcCch------hhhee
Confidence            3456677778888776543                1222344567888999999999999999996544      88899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 028333          141 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC  186 (210)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~  186 (210)
                      +..|.++...+.+.+|+..|++...+.      |....+...+-.|
T Consensus        76 ~rrg~a~m~l~~~~~A~~~l~~~~~l~------Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   76 VRRGTAVMALGEFKKALLDLEKVKKLA------PNDPDATRKIDEC  115 (476)
T ss_pred             eeccHHHHhHHHHHHHHHHHHHhhhcC------cCcHHHHHHHHHH
Confidence            999999999999999999999998776      5555555555444

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.59  E-value=0.32  Score=36.84  Aligned_cols=73  Identities=14%  Similarity=0.126  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCCcc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333          136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSG----------STEAYGAIADCYTELGDLERAARFYDKY  203 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~----------~~~~~~~lg~~y~~~g~~~~A~~~~~~a  203 (210)
                      ...++..-|+-++..|+|.+|...|..|+-..+.+  ...|+          ....+.|.+.|+...|+|-++++.....
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            45578888999999999999999999998776553  12221          3346899999999999999999999888


Q ss_pred             HHhhc
Q 028333          204 ISRLE  208 (210)
Q Consensus       204 l~~~~  208 (210)
                      +...+
T Consensus       257 L~~~~  261 (329)
T KOG0545|consen  257 LRHHP  261 (329)
T ss_pred             HhcCC
Confidence            77554

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.48  E-value=1.3  Score=37.17  Aligned_cols=80  Identities=20%  Similarity=0.130  Sum_probs=64.9

Q ss_pred             HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 028333          128 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE-REGEYSGSTEAYGAIADCYTELGD-LERAARFYDKYIS  205 (210)
Q Consensus       128 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~  205 (210)
                      +...|.....--+.-+|.+...+|+...|..+|+..++-.. ...+.+..+.+++.+|..|..+|. ..++..++.+|.+
T Consensus       440 ~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~  519 (546)
T KOG3783|consen  440 PKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKARE  519 (546)
T ss_pred             cCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHh
Confidence            34445555666677889999999999999999998875433 345566788999999999999999 9999999999987


Q ss_pred             hh
Q 028333          206 RL  207 (210)
Q Consensus       206 ~~  207 (210)
                      ..
T Consensus       520 ~~  521 (546)
T KOG3783|consen  520 YA  521 (546)
T ss_pred             hc
Confidence            54

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.47  E-value=0.15  Score=38.19  Aligned_cols=58  Identities=16%  Similarity=0.267  Sum_probs=45.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          147 LQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       147 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ....+|.+.|.+.+.+++.+.      +.....|+++|....+.|+++.|...|++.+++-+.|
T Consensus         5 ~~~~~D~~aaaely~qal~la------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELA------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcC------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            345678888888888888776      5667788888888888888888888888888776544

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=93.43  E-value=0.57  Score=38.02  Aligned_cols=75  Identities=16%  Similarity=0.092  Sum_probs=59.2

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  168 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  168 (210)
                      +.+.++...+.+-.+|...+.|++|...-.++.  .+........+..++++|.+..-+.+|..|.++|.+|+..+.
T Consensus       204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap  278 (493)
T KOG2581|consen  204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP  278 (493)
T ss_pred             cchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence            555667677778899999999999988776654  122223335788899999999999999999999999987764

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=93.42  E-value=1.2  Score=29.93  Aligned_cols=69  Identities=13%  Similarity=0.209  Sum_probs=55.4

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP---------IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE  168 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~---------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  168 (210)
                      ...+|...+..+++-.++-.|++|+.+.+++...         .....+.+|++..+...||.+=.+.|++-|-+...
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vl   81 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVL   81 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            3557888899999999999999999999887311         11234778999999999999999999998865543

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.41  E-value=1.6  Score=33.99  Aligned_cols=90  Identities=9%  Similarity=0.058  Sum_probs=65.3

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  180 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  180 (210)
                      +..+...-..+..++-++.+.+.++-.+..+.......+..|+|..|.+.+|-+.+.+...+.++-+-..+-.-..--+-
T Consensus        79 fD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~k  158 (412)
T COG5187          79 FDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCK  158 (412)
T ss_pred             hhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHH
Confidence            33344444445566778888888887777666777899999999999999999999999999987775554444444455


Q ss_pred             HHHHHHHHHc
Q 028333          181 GAIADCYTEL  190 (210)
Q Consensus       181 ~~lg~~y~~~  190 (210)
                      ..+|.+|..+
T Consensus       159 iRlg~~y~d~  168 (412)
T COG5187         159 IRLGLIYGDR  168 (412)
T ss_pred             HHHHHhhccH
Confidence            5666666543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=93.39  E-value=2  Score=37.90  Aligned_cols=81  Identities=17%  Similarity=0.299  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHhC-------------CCcchHHHH
Q 028333          120 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV------LQISEREG-------------EYSGSTEAY  180 (210)
Q Consensus       120 ~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------l~~~~~~~-------------~~~~~~~~~  180 (210)
                      +.+++.+.+.+.|.......|..++.-|...|+|+.|.+.|.++      +.+..+.+             .+......|
T Consensus       748 w~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~y  827 (1636)
T KOG3616|consen  748 WKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLY  827 (1636)
T ss_pred             hhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHH
Confidence            45666666666665555556677888888899999988877655      22222111             122344456


Q ss_pred             HHHHHHHHHcCCHHHHHHHH
Q 028333          181 GAIADCYTELGDLERAARFY  200 (210)
Q Consensus       181 ~~lg~~y~~~g~~~~A~~~~  200 (210)
                      ...+.-..+.|+|.+|.+.|
T Consensus       828 iakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  828 IAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HHhHHhHHhhcchhhhhhee
Confidence            66677777888888888766

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=93.12  E-value=3.4  Score=32.29  Aligned_cols=67  Identities=13%  Similarity=0.110  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      .-..+..++++.|+|..|+....-.+...++.+|.+.....|..-..+|++..+..++...+..|..
T Consensus       127 Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt  193 (421)
T COG5159         127 LECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAART  193 (421)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence            4456788899999999999999999999999999999999999999999999999888887766644

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.98  E-value=1.4  Score=32.40  Aligned_cols=61  Identities=16%  Similarity=0.201  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q 028333          136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF  199 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~  199 (210)
                      .+...+.+|..|. ..|.++|+..+.+++++...  +....++.+..|+.+|..+|+++.|--|
T Consensus       140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~--~~~~n~eil~sLas~~~~~~~~e~AYiw  200 (203)
T PF11207_consen  140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNP--DDNFNPEILKSLASIYQKLKNYEQAYIW  200 (203)
T ss_pred             CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence            4667777887666 77999999999999988743  2244678999999999999999998654

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.93  E-value=4.4  Score=33.12  Aligned_cols=100  Identities=14%  Similarity=0.121  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hCCCc
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER----EGEYS  174 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~  174 (210)
                      ++..+|..|..-|+.+.|++.|.++-+.|-+   .......+.|+=.+..-.|+|..-..+-.+|......    ....+
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs---~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~  228 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTS---AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP  228 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcc---hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence            5778999999999999999999998887765   3335566777777888899999888888888766311    11112


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKY  203 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  203 (210)
                      ..  ....-|.+...+++|+.|..+|-.+
T Consensus       229 ~k--l~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  229 AK--LKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             cc--hHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            23  3444555566677999999988654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=92.70  E-value=1.1  Score=37.36  Aligned_cols=90  Identities=16%  Similarity=0.210  Sum_probs=55.7

Q ss_pred             hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q 028333          109 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  188 (210)
Q Consensus       109 ~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  188 (210)
                      ++++++.+-..|++.+.-      .+....++...|..-..+|+.+.|...|+-|+....    .......+..--+.-.
T Consensus       449 qL~efDRcRkLYEkfle~------~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~----ldmpellwkaYIdFEi  518 (677)
T KOG1915|consen  449 QLREFDRCRKLYEKFLEF------SPENCYAWSKYAELETSLGDTDRARAIFELAISQPA----LDMPELLWKAYIDFEI  518 (677)
T ss_pred             HHhhHHHHHHHHHHHHhc------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc----cccHHHHHHHhhhhhh
Confidence            455666666666666663      333666777777777788888888888877765431    1111222333334445


Q ss_pred             HcCCHHHHHHHHHHHHHhhc
Q 028333          189 ELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       189 ~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..|++++|...|++.++..+
T Consensus       519 ~~~E~ekaR~LYerlL~rt~  538 (677)
T KOG1915|consen  519 EEGEFEKARALYERLLDRTQ  538 (677)
T ss_pred             hcchHHHHHHHHHHHHHhcc
Confidence            67788888888887776543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.67  E-value=0.98  Score=35.95  Aligned_cols=106  Identities=18%  Similarity=0.053  Sum_probs=83.7

Q ss_pred             ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333           90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus        90 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      +++-+.+..+....-..++.+|+.+.-...+++.+.....  +.+.......-++......|-|++|....++++++.  
T Consensus       130 L~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~--dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN--  205 (491)
T KOG2610|consen  130 LDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA--DLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN--  205 (491)
T ss_pred             HHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCC--CCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC--
Confidence            4455556667777778888899999999999999886432  455455555667888889999999999999999886  


Q ss_pred             hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333          170 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKY  203 (210)
Q Consensus       170 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  203 (210)
                          +....+.+..+.++...|+++++.++-.+.
T Consensus       206 ----~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  206 ----RFDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             ----CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence                566788899999999999999999876553

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.37  E-value=2.5  Score=29.00  Aligned_cols=67  Identities=15%  Similarity=0.295  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~---~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      ....+++|++.....+   ..+.+..++..++    ...+...-+..++++..++..++|++|+.|.+..++..
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e  101 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE  101 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            3356778888776544   5566667766654    12445566788999999999999999999999988764

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.23  E-value=0.78  Score=23.57  Aligned_cols=20  Identities=20%  Similarity=0.323  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHH
Q 028333          180 YGAIADCYTELGDLERAARF  199 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~  199 (210)
                      ++.+|..+..+|++++|++.
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHH
Confidence            34444555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.19  E-value=2.1  Score=33.14  Aligned_cols=109  Identities=7%  Similarity=0.048  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      ++-.+-.+++.+++|++-...|.+.+...++.--....-.+.+++-..-....+.+--..+|+..++..++..+......
T Consensus        67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK  146 (440)
T KOG1464|consen   67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK  146 (440)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence            45666778889999999999999888776652111111112222211111233344444555555555554444444455


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ....+|.+|+..++|.+-.+...+.....
T Consensus       147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SC  175 (440)
T KOG1464|consen  147 TNTKLGKLYFDRGEYTKLQKILKQLHQSC  175 (440)
T ss_pred             ccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence            66789999999999888777766654443

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.19  E-value=0.46  Score=28.97  Aligned_cols=28  Identities=14%  Similarity=0.171  Sum_probs=21.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333          142 GLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      .-|..-=..|+|++|+.+|..+++....
T Consensus        11 ~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680          11 TQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            3344455899999999999999988754

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=92.14  E-value=5.1  Score=31.95  Aligned_cols=99  Identities=12%  Similarity=0.121  Sum_probs=73.5

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc-hHHHHHHHH
Q 028333          106 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIA  184 (210)
Q Consensus       106 ~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~lg  184 (210)
                      +..+.++.++|+++.++..+.....+.+.........+|+++...||.+++.+.+...-.......+-+. .-..|+.++
T Consensus        84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ls  163 (380)
T KOG2908|consen   84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLS  163 (380)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHH
Confidence            3445569999999999999988888777777778889999999999999999999988777666555444 333455555


Q ss_pred             HH-HHHcCCHHHHHHHHHHHH
Q 028333          185 DC-YTELGDLERAARFYDKYI  204 (210)
Q Consensus       185 ~~-y~~~g~~~~A~~~~~~al  204 (210)
                      .- |...|++.....+.-+.+
T Consensus       164 sqYyk~~~d~a~yYr~~L~YL  184 (380)
T KOG2908|consen  164 SQYYKKIGDFASYYRHALLYL  184 (380)
T ss_pred             HHHHHHHHhHHHHHHHHHHHh
Confidence            54 455688876655544443

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.99  E-value=0.58  Score=28.62  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333          137 KKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus       137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      +..+...+.-.=..|+|++|+.+|+++++....
T Consensus         6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            334455566667899999999999999888743

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=91.92  E-value=9.2  Score=34.43  Aligned_cols=113  Identities=17%  Similarity=0.109  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHH---------
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI--KYHSMV---------  163 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~--~~~~~a---------  163 (210)
                      ..+.+...+|.+....|++++|..+...+.+++++.+.......+....+.+...+|+...|.  .-|...         
T Consensus       495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~  574 (894)
T COG2909         495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP  574 (894)
T ss_pred             hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence            356678899999999999999999999999999998888777777777788888887322222  111111         


Q ss_pred             -----------------------------HHHHHHhCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          164 -----------------------------LQISEREGEYSG-STEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       164 -----------------------------l~~~~~~~~~~~-~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                                                   +++-......+. ....++.++.++...|+.++|....+......
T Consensus       575 ~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~  648 (894)
T COG2909         575 RHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL  648 (894)
T ss_pred             cchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence                                         000000000111 11223589999999999999999888776654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=91.88  E-value=6.3  Score=37.36  Aligned_cols=70  Identities=14%  Similarity=0.059  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      ...+|...|...+.+.+-+.|-..+.+|++-.++    .........-+..-++.||.+++...|+-.+....+
T Consensus      1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc
Confidence            4446666777788888878888888888876654    223445555666667777777777777666555433

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.88  E-value=0.75  Score=37.60  Aligned_cols=72  Identities=18%  Similarity=0.163  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN---VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  171 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~---~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  171 (210)
                      +...+..++.-+|||..|++..+- +++.++   .+.+......++++|.+|+.+++|..|+..|...+-...+..
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k  198 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK  198 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456677889999999999987642 222211   123444666899999999999999999999999987765543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=91.85  E-value=3.5  Score=33.45  Aligned_cols=102  Identities=16%  Similarity=0.202  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---QGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ...++=..|....+|+.-+...+..-.+ +..+ -..........|.++..   .|+.++|+..+..++.-.     ...
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~-p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-----~~~  215 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-----ENP  215 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-----CCC
Confidence            3455566788888888877766554332 1111 22234456677888877   999999999999875432     245


Q ss_pred             hHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhh
Q 028333          176 STEAYGAIADCYTEL---------GDLERAARFYDKYISRL  207 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~---------g~~~~A~~~~~~al~~~  207 (210)
                      .++.+..+|.+|..+         ...++|+.+|.++.++-
T Consensus       216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~  256 (374)
T PF13281_consen  216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE  256 (374)
T ss_pred             ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence            678888899988652         24788999999987754

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=91.77  E-value=0.59  Score=35.78  Aligned_cols=61  Identities=15%  Similarity=0.037  Sum_probs=54.1

Q ss_pred             hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333          109 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus       109 ~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      ..-....|.+...+|+-.++..+|...+..+.+..+..|+...+|+.|..||.+|.....+
T Consensus        51 s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~  111 (368)
T COG5091          51 SDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD  111 (368)
T ss_pred             cccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence            3445778999999999999999999888888888999999999999999999999988654

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.72  E-value=0.45  Score=25.70  Aligned_cols=25  Identities=36%  Similarity=0.579  Sum_probs=17.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          181 GAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       181 ~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      +++|..|..+|+.+.|.+.+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4567777777777777777766653

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.57  E-value=2.5  Score=35.33  Aligned_cols=106  Identities=21%  Similarity=0.242  Sum_probs=65.3

Q ss_pred             HHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHH---------------HHHHH--------------
Q 028333           95 EELLSRLKTG-KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA---------------ARGLG--------------  144 (210)
Q Consensus        95 ~~~~~~~~~g-~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~---------------~~~lg--------------  144 (210)
                      ..+..+.+-+ ..-....+.+.+.+.|+.++++.++.+.+......               .--||              
T Consensus       363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~  442 (677)
T KOG1915|consen  363 RYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKG  442 (677)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHH
Confidence            3444554444 23445667777777777777766664433222111               11111              


Q ss_pred             --HHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          145 --ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       145 --~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                        .+-.++++++.....|++-++..      |....++...|..-..+|+.+.|...|+-|++.
T Consensus       443 YIelElqL~efDRcRkLYEkfle~~------Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q  500 (677)
T KOG1915|consen  443 YIELELQLREFDRCRKLYEKFLEFS------PENCYAWSKYAELETSLGDTDRARAIFELAISQ  500 (677)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcC------hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence              11234555566666666665553      667788999999999999999999999988864

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=91.52  E-value=0.77  Score=36.42  Aligned_cols=107  Identities=7%  Similarity=-0.074  Sum_probs=84.5

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc-hHHH
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEA  179 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~  179 (210)
                      ..+...|+..++|.+|+......+.-.++++|.......+..=.-+|....+..+|...+..|--.+...--+|. .+..
T Consensus       132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l  211 (411)
T KOG1463|consen  132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL  211 (411)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence            446778999999999999999999999999999888888888888999999999998888877554433333332 4445


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          180 YGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      -..-|..+..-.||.-|..||=+|.+-+
T Consensus       212 DLqSGIlha~ekDykTafSYFyEAfEgf  239 (411)
T KOG1463|consen  212 DLQSGILHAAEKDYKTAFSYFYEAFEGF  239 (411)
T ss_pred             HHhccceeecccccchHHHHHHHHHccc
Confidence            5566777777789999999998887644

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.46  E-value=0.16  Score=40.05  Aligned_cols=66  Identities=17%  Similarity=0.203  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      .+..+-..|.++..+++...|+.-+..++.+.+.      .+.-|-..|.+...+|++++|..++..+.++.
T Consensus       147 ~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D------sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  147 LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD------SAKGYKFRGYAERLLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             hhhhcccccceeeeccCCchhhhhhhhhhccCcc------cccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence            4445677899999999999999999999996554      66677788999999999999999999997764

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.43  E-value=0.58  Score=34.30  Aligned_cols=58  Identities=21%  Similarity=0.238  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI  157 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~  157 (210)
                      +...+.+|..| ...+.++|+..+.+++++...  +....++.+..|+.+|+.++++++|-
T Consensus       141 ~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~--~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  141 AELQYALATYY-TKRDPEKTIQLLLRALELSNP--DDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            44566667555 588999999999999998765  32335778999999999999999885

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=91.32  E-value=1.7  Score=36.83  Aligned_cols=83  Identities=14%  Similarity=0.103  Sum_probs=54.0

Q ss_pred             HHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           99 SRLKTGKNFL--RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        99 ~~~~~g~~~~--~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ++.++|.+--  ....-+.++..|.+|+..++..-+.. ...-|.++|..|+..++|.+|+.++-++-...+..+.....
T Consensus       279 ALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~-HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reD  357 (618)
T PF05053_consen  279 ALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNH-HVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSRED  357 (618)
T ss_dssp             HHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGG
T ss_pred             hhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCC-ccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccH
Confidence            4555555432  23345677899999999998864433 45567788999999999999999999998887665554444


Q ss_pred             HHHHHH
Q 028333          177 TEAYGA  182 (210)
Q Consensus       177 ~~~~~~  182 (210)
                      -.+|..
T Consensus       358 eEiYKE  363 (618)
T PF05053_consen  358 EEIYKE  363 (618)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            455444

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.16  E-value=0.43  Score=38.97  Aligned_cols=68  Identities=16%  Similarity=0.180  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          139 AARGLGASLQRQGKYREAIKYHSMVLQISERE---GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +..++.+++..+|||..|+..++.. ++.++.   .........++.+|-+|..+++|.+|++.|...+-..
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi  194 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYI  194 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567888899999999999887644 221110   1122345679999999999999999999999887644

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.04  E-value=2.2  Score=35.33  Aligned_cols=82  Identities=22%  Similarity=0.272  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      .+..-++.-|...+.+|+|.++.-|-.=..++++       .+.++.-+|.+.+..++|++|..++.+.-.     ++..
T Consensus       460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-------S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~-----n~~~  527 (549)
T PF07079_consen  460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-------SPQAYRLLGLCLMENKRYQEAWEYLQKLPP-----NERM  527 (549)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-------cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC-----chhh
Confidence            3444455566778899999999887766666655       477899999999999999999999987621     2222


Q ss_pred             chHHHHHHHHHHHH
Q 028333          175 GSTEAYGAIADCYT  188 (210)
Q Consensus       175 ~~~~~~~~lg~~y~  188 (210)
                      ..+.+...++.|+.
T Consensus       528 ~dskvqKAl~lCqK  541 (549)
T PF07079_consen  528 RDSKVQKALALCQK  541 (549)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34445555555554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=91.03  E-value=3.4  Score=27.82  Aligned_cols=67  Identities=16%  Similarity=0.135  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc---------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          140 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS---------GSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       140 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      +..+|....+.+++-.|+-.|++|+.+..+.....         ......+|+|..+..+|+.+-.++|++.|-+.
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~   79 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK   79 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence            35678888899999999999999998887763111         13345789999999999999999999877653

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.86  E-value=4.7  Score=29.12  Aligned_cols=101  Identities=15%  Similarity=0.169  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ..+.+..|.+..+.|+-..|+.+|.++-...+   .+. ..-.+...-+.++...|-|++-..-.+-.   .  .+..+.
T Consensus        94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~---~P~~~rd~ARlraa~lLvD~gsy~dV~srvepL---a--~d~n~m  165 (221)
T COG4649          94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTS---IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPL---A--GDGNPM  165 (221)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHHHhccCC---CcchhhHHHHHHHHHHHhccccHHHHHHHhhhc---c--CCCChh
Confidence            44678889999999999999999998655322   222 12345566677788888888654433321   1  223355


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      ...+.-.+|..-.+-|++.+|..+|.+..+
T Consensus       166 R~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            677888899999999999999999987654

>PRK10941 hypothetical protein; Provisional

Probab=90.73  E-value=5.9  Score=30.71  Aligned_cols=65  Identities=12%  Similarity=0.063  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      ...+.++=.+|...++++.|+...+..+.+.+.      .+.-....|.+|.++|.+..|..-++..++..
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~------dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPE------DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            335577788899999999999999999998775      44556779999999999999999999998776

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=90.58  E-value=0.49  Score=36.20  Aligned_cols=58  Identities=16%  Similarity=0.092  Sum_probs=52.3

Q ss_pred             CHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          152 KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       152 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ....|.+.+.+|+-.++..++......+....+..|+.+.+|+.|.-||.+|...+..
T Consensus        54 ~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~  111 (368)
T COG5091          54 TMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD  111 (368)
T ss_pred             ChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence            4677999999999999988888888889999999999999999999999999987654

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.57  E-value=8.2  Score=32.70  Aligned_cols=77  Identities=22%  Similarity=0.092  Sum_probs=62.5

Q ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q 028333           91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA-QNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQIS  167 (210)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~  167 (210)
                      ++...+..-.+-+|.+...+|+-..|..+|...++-. .+..+++..+.+++.+|..|..++. ..++..++.+|-...
T Consensus       443 ~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~  521 (546)
T KOG3783|consen  443 DDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA  521 (546)
T ss_pred             CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence            3445556566789999999999999999999888543 3345777788899999999999998 999999999995554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=90.35  E-value=6.6  Score=35.28  Aligned_cols=84  Identities=14%  Similarity=0.091  Sum_probs=44.8

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  180 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  180 (210)
                      .-.|....++|+.++|...++ ++....   .+  .-.++.-+-.+|..++++++|..+|+++....      |. -...
T Consensus        47 vLkaLsl~r~gk~~ea~~~Le-~~~~~~---~~--D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~------P~-eell  113 (932)
T KOG2053|consen   47 VLKALSLFRLGKGDEALKLLE-ALYGLK---GT--DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY------PS-EELL  113 (932)
T ss_pred             HHHHHHHHHhcCchhHHHHHh-hhccCC---CC--chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC------Cc-HHHH
Confidence            334666667777777764333 222111   11  23345566677777777777777777776554      33 3334


Q ss_pred             HHHHHHHHHcCCHHHHH
Q 028333          181 GAIADCYTELGDLERAA  197 (210)
Q Consensus       181 ~~lg~~y~~~g~~~~A~  197 (210)
                      +.+=.+|...++|.+-.
T Consensus       114 ~~lFmayvR~~~yk~qQ  130 (932)
T KOG2053|consen  114 YHLFMAYVREKSYKKQQ  130 (932)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444445544433

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.27  E-value=0.84  Score=35.06  Aligned_cols=62  Identities=16%  Similarity=0.163  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 028333          116 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  189 (210)
Q Consensus       116 A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  189 (210)
                      |..+|.+|..+.+.      .+..++.+|.++...|+.=.|+-+|-+++-..      .....+..|+...+..
T Consensus         1 A~~~Y~~A~~l~P~------~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~------~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPS------NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR------IPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TT------BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS------B--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCC------CCCcccchhhhhccccchHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHH
Confidence            67899999999888      56678999999999999999999999997442      3345677777777776

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=90.06  E-value=2.5  Score=32.95  Aligned_cols=107  Identities=7%  Similarity=-0.056  Sum_probs=83.6

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc-hHHH
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEA  179 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~  179 (210)
                      ..+...+++.|+|..|+....-.+.-.++++|.......+..=..+|...++..++...+..|--.+...--+|. .+..
T Consensus       129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l  208 (421)
T COG5159         129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL  208 (421)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence            446778999999999999999999999999999888888888888999999999988888777555544333332 3344


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          180 YGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      -..-|..++.-.+|.-|-.||-++++-+
T Consensus       209 DL~sGIlhcdd~dyktA~SYF~Ea~Egf  236 (421)
T COG5159         209 DLLSGILHCDDRDYKTASSYFIEALEGF  236 (421)
T ss_pred             HHhccceeeccccchhHHHHHHHHHhcc
Confidence            4455667777889999999998887744

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.01  E-value=1.2  Score=27.29  Aligned_cols=32  Identities=16%  Similarity=0.270  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333          138 KAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus       138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      ..+...|.-.=..|+|++|+.+|.++++....
T Consensus         7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           7 KEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            33445556667899999999999999887744

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=89.81  E-value=1.1  Score=23.06  Aligned_cols=24  Identities=33%  Similarity=0.587  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 028333          138 KAARGLGASLQRQGKYREAIKYHS  161 (210)
Q Consensus       138 ~~~~~lg~~~~~~~~~~~A~~~~~  161 (210)
                      +.++.+|..+...|++++|+..|+
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~   25 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQ   25 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHH
Confidence            356788999999999999999955

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=89.71  E-value=2.7  Score=36.42  Aligned_cols=101  Identities=10%  Similarity=0.057  Sum_probs=74.4

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHH
Q 028333          105 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA  184 (210)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  184 (210)
                      .+-+..++..+-+.-|.+|+.-..-....-.....+...|..|-..|+.+.|...|+++.+..  .......+.+|.+.|
T Consensus       355 RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~--y~~v~dLa~vw~~wa  432 (835)
T KOG2047|consen  355 RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP--YKTVEDLAEVWCAWA  432 (835)
T ss_pred             hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC--ccchHHHHHHHHHHH
Confidence            344556778888888888876332111222234577889999999999999999999998764  112234578899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhh
Q 028333          185 DCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       185 ~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ..-....+++.|+...+.|....
T Consensus       433 emElrh~~~~~Al~lm~~A~~vP  455 (835)
T KOG2047|consen  433 EMELRHENFEAALKLMRRATHVP  455 (835)
T ss_pred             HHHHhhhhHHHHHHHHHhhhcCC
Confidence            99899999999999988887543

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=89.62  E-value=11  Score=31.23  Aligned_cols=116  Identities=5%  Similarity=-0.072  Sum_probs=99.1

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  171 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  171 (210)
                      +-.......+..+.++...+++..|-....+..--+....+......++..++.++-..+....+..+.-+++....+.+
T Consensus       268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~  347 (482)
T KOG4322|consen  268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYS  347 (482)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhc
Confidence            33445556777899999999999999999999988888788888888999999999888888889999999988887777


Q ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       172 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      .+-..+..-.+++.....+|-.++|.+....|+...
T Consensus       348 ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~I  383 (482)
T KOG4322|consen  348 LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLI  383 (482)
T ss_pred             cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHH
Confidence            767778888899999999999999999999887654

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.36  E-value=0.99  Score=24.38  Aligned_cols=25  Identities=16%  Similarity=0.169  Sum_probs=22.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          141 RGLGASLQRQGKYREAIKYHSMVLQ  165 (210)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~al~  165 (210)
                      .+++.+|...|+++.|...+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5789999999999999999999974

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=89.13  E-value=0.27  Score=38.96  Aligned_cols=105  Identities=15%  Similarity=0.109  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CC-----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KD-----------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ  165 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~-----------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  165 (210)
                      .....|.-.+..++|..|..-|.+++......  .+           .......+.+++.+-...+.+..|+.....+++
T Consensus       224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~  303 (372)
T KOG0546|consen  224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR  303 (372)
T ss_pred             hhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence            34557888999999999999999988765521  01           111222556788888889999999888877766


Q ss_pred             HHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          166 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                            +.+....+++..+..+....++++|+++++.+....++
T Consensus       304 ------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~  341 (372)
T KOG0546|consen  304 ------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN  341 (372)
T ss_pred             ------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence                  23556788999999999999999999999998766554

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=89.07  E-value=12  Score=31.02  Aligned_cols=107  Identities=16%  Similarity=0.003  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHh--
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-------REAIKYHSMVLQISERE--  170 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~-------~~A~~~~~~al~~~~~~--  170 (210)
                      ...+|..++..++|+.|...|+-+.+-+..-+.....+-+.--.|.+....+..       +....+++.|+....+.  
T Consensus       211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~  290 (414)
T PF12739_consen  211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL  290 (414)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence            466899999999999999999988886654334444555666667776666643       36677888887777652  


Q ss_pred             ---CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          171 ---GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       171 ---~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                         ........+....+.++...|.+.+|...+-+....
T Consensus       291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~  329 (414)
T PF12739_consen  291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE  329 (414)
T ss_pred             cccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence               111234456777788888899988887776655543

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=88.16  E-value=1.9  Score=25.58  Aligned_cols=29  Identities=14%  Similarity=0.203  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          137 KKAARGLGASLQRQGKYREAIKYHSMVLQ  165 (210)
Q Consensus       137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~  165 (210)
                      +..+...|.-+=..|++++|+.+|.++++
T Consensus         5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen    5 AIELIKKAVEADEAGNYEEALELYKEAIE   33 (69)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33444455555555666666666655543

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]

Probab=88.10  E-value=8.5  Score=28.18  Aligned_cols=66  Identities=20%  Similarity=0.124  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM  162 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~  162 (210)
                      +.-+...+....+.|++++|...++++.+...+++.........++-|.+-..+..|-+|...+.-
T Consensus        29 i~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~   94 (204)
T COG2178          29 IVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSI   94 (204)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            334455666777889999999999999998888665555555566667777777788888776653

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.91  E-value=6.1  Score=30.75  Aligned_cols=66  Identities=21%  Similarity=0.231  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ...++..++..+...++++.+++.+++.+...      +..-..|..+-..|...|+...|+..|++.-+..
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~  217 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELD------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL  217 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence            45577889999999999999999999998875      6667889999999999999999999999876643

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.86  E-value=1.3  Score=27.27  Aligned_cols=25  Identities=36%  Similarity=0.312  Sum_probs=13.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          183 IADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       183 lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      .|..+.+.|+.++|+.+|++++..+
T Consensus        14 kaL~~dE~g~~e~Al~~Y~~gi~~l   38 (79)
T cd02679          14 KALRADEWGDKEQALAHYRKGLREL   38 (79)
T ss_pred             HHhhhhhcCCHHHHHHHHHHHHHHH
Confidence            3333444555555666665555543

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=87.53  E-value=16  Score=30.84  Aligned_cols=108  Identities=13%  Similarity=0.062  Sum_probs=73.3

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  171 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  171 (210)
                      +.+....+...+|.+...+|+.++|++.++..++..+.    ........++-.++...+.|.++...+.+.-++     
T Consensus       254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~----~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi-----  324 (539)
T PF04184_consen  254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN----LDNLNIRENLIEALLELQAYADVQALLAKYDDI-----  324 (539)
T ss_pred             ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc----cchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc-----
Confidence            34445667788999999999999999999998875432    124457889999999999999999888876221     


Q ss_pred             CCcchHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhhc
Q 028333          172 EYSGSTEAYGAIADCYTE-LGD---------------LERAARFYDKYISRLE  208 (210)
Q Consensus       172 ~~~~~~~~~~~lg~~y~~-~g~---------------~~~A~~~~~~al~~~~  208 (210)
                      ..+..+...+.-|..-.. .++               -..|.+...+|++..+
T Consensus       325 ~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP  377 (539)
T PF04184_consen  325 SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP  377 (539)
T ss_pred             cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence            123344445554554322 222               1345677777776543

The molecular function of this protein is uncertain.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=87.48  E-value=13  Score=29.52  Aligned_cols=86  Identities=17%  Similarity=0.118  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHhc---------------------------CChHHHHHHHHHHHHHHHHc
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALE-LAQNV---------------------------KDPIEEKKAARGLGASLQRQ  150 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~-l~~~~---------------------------~~~~~~~~~~~~lg~~~~~~  150 (210)
                      +.+..+......|+..+|+..++..+. .....                           ......+.++.-+|......
T Consensus       186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~  265 (352)
T PF02259_consen  186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL  265 (352)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence            456668888899999999999888887 22211                           11234566777778877777


Q ss_pred             ------CCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q 028333          151 ------GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  190 (210)
Q Consensus       151 ------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  190 (210)
                            ++.+.++..|++++++.      +....+++.+|..+...
T Consensus       266 ~~~~~~~~~~~~~~~~~~a~~~~------~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  266 YSKLSSESSDEILKYYKEATKLD------PSWEKAWHSWALFNDKL  305 (352)
T ss_pred             ccccccccHHHHHHHHHHHHHhC------hhHHHHHHHHHHHHHHH
Confidence                  88899999999998886      44556788888877664

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.80  E-value=6.4  Score=30.88  Aligned_cols=63  Identities=24%  Similarity=0.337  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      .+...+..|...|.+.+|+.+.++++.+.      +.....+..+-.++..+||--.|...|++.-+..
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltld------pL~e~~nk~lm~~la~~gD~is~~khyerya~vl  343 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLD------PLSEQDNKGLMASLATLGDEISAIKHYERYAEVL  343 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcC------hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence            44455777889999999999999998875      6677888999999999999999999998876543

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.77  E-value=2.4  Score=25.81  Aligned_cols=31  Identities=10%  Similarity=0.140  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333          136 EKKAARGLGASLQRQGKYREAIKYHSMVLQI  166 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  166 (210)
                      .+..+...+.-+-..|++++|+.+|+++++.
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            3444455555556666666666666666544

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.54  E-value=2.8  Score=25.50  Aligned_cols=30  Identities=13%  Similarity=0.014  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333          140 ARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus       140 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      +...|.-.-..|+|++|+.+|.++++....
T Consensus         9 lv~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           9 LVVQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            344455566899999999999999887744

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=86.32  E-value=14  Score=28.68  Aligned_cols=91  Identities=19%  Similarity=0.219  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 028333           99 SRLKTGKNFLRNQ-------DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        99 ~~~~~g~~~~~~~-------~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~  167 (210)
                      +.+.+|..|..-.       +...|...|.++-...        ...+...+|.+|..    ..++++|..+|+++-+.-
T Consensus       150 ~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g  221 (292)
T COG0790         150 AMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG  221 (292)
T ss_pred             HHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence            4677777776542       2336777777776643        56678889988865    558999999999995431


Q ss_pred             HHhCCCcchHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHh
Q 028333          168 EREGEYSGSTEAYGAIADCYTELG---------------DLERAARFYDKYISR  206 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~lg~~y~~~g---------------~~~~A~~~~~~al~~  206 (210)
                              .....+.++ ++...|               +...|..++.++-..
T Consensus       222 --------~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~  266 (292)
T COG0790         222 --------DGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL  266 (292)
T ss_pred             --------CHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence                    167888888 666555               888888888877553

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=86.23  E-value=15  Score=29.25  Aligned_cols=77  Identities=13%  Similarity=0.031  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 028333          113 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  189 (210)
Q Consensus       113 ~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  189 (210)
                      .++-++.+++.++-+++.-.......+..+.|..|.+.||-+.|.+.+.+..+-.-..+..-...-+...+|..|..
T Consensus        80 neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D  156 (393)
T KOG0687|consen   80 NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD  156 (393)
T ss_pred             hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc
Confidence            34556667777777766555666788999999999999999999999999987776666655555666777777754

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.15  E-value=3  Score=25.30  Aligned_cols=31  Identities=16%  Similarity=0.178  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333          139 AARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      .+...|.-.-..|+|++|+.+|.++++....
T Consensus         8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   38 (75)
T cd02678           8 ELVKKAIEEDNAGNYEEALRLYQHALEYFMH   38 (75)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3444556667899999999999999888744

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.11  E-value=9.5  Score=26.70  Aligned_cols=84  Identities=24%  Similarity=0.180  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      .+......-....+.+.+...+...--+.++      ....-..-|+++...|++.+|+..|+...+-.      ...+.
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~------~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~------~~~p~   79 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPN------LKELDMFDGWLLIARGNYDEAARILRELLSSA------GAPPY   79 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------ccccchhHHHHHHHcCCHHHHHHHHHhhhccC------CCchH
Confidence            3444444445577888877766554444343      45555667999999999999999998874332      34466


Q ss_pred             HHHHHHHHHHHcCCHH
Q 028333          179 AYGAIADCYTELGDLE  194 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~  194 (210)
                      +---++.|+..+||.+
T Consensus        80 ~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        80 GKALLALCLNAKGDAE   95 (153)
T ss_pred             HHHHHHHHHHhcCChH
Confidence            6677888888888854

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=86.09  E-value=2.7  Score=36.07  Aligned_cols=66  Identities=12%  Similarity=0.079  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      +.....++|++....+-.-.|-..+.+++.+.-.      .+...+.+|+.+..+.+.++|++.|++|++..
T Consensus       641 ~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s------epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~  706 (886)
T KOG4507|consen  641 QDVPLVNLANLLIHYGLHLDATKLLLQALAINSS------EPLTFLSLGNAYLALKNISGALEAFRQALKLT  706 (886)
T ss_pred             hcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc------CchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence            3345677888888888888899999999887633      55678889999999999999999999998765

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=86.07  E-value=16  Score=31.35  Aligned_cols=86  Identities=9%  Similarity=0.016  Sum_probs=56.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q 028333          122 AALELAQNVKDPIEEKKAARGLGASLQR--QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF  199 (210)
Q Consensus       122 ~al~l~~~~~~~~~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~  199 (210)
                      +.+-+.-..+.-..-+.++.++|.+--.  ..+-..++..|++|+...+..-+ .....-|..+|-.|+..+++.+|+.+
T Consensus       262 ~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~-n~HvYPYty~gg~~yR~~~~~eA~~~  340 (618)
T PF05053_consen  262 DLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN-NHHVYPYTYLGGYYYRHKRYREALRS  340 (618)
T ss_dssp             HHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT-T--SHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc-CCccccceehhhHHHHHHHHHHHHHH
Confidence            3333333444444456677777766533  33456689999999999887644 33446688899999999999999999


Q ss_pred             HHHHHHhhc
Q 028333          200 YDKYISRLE  208 (210)
Q Consensus       200 ~~~al~~~~  208 (210)
                      +.+|-+.+.
T Consensus       341 Wa~aa~Vi~  349 (618)
T PF05053_consen  341 WAEAADVIR  349 (618)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            988866543

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=85.31  E-value=4.5  Score=23.95  Aligned_cols=34  Identities=18%  Similarity=0.232  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  129 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  129 (210)
                      .+..+...|.-+=..|++++|+.+|.++++..-.
T Consensus         4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   37 (69)
T PF04212_consen    4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ   37 (69)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            3455677888888999999999999999986543

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.14  E-value=16  Score=28.48  Aligned_cols=96  Identities=19%  Similarity=0.258  Sum_probs=64.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 028333          110 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  189 (210)
Q Consensus       110 ~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  189 (210)
                      ..+.++|+..|.+.+++-...++  +-..++-.+-.+++.+++|++-++.|++.+...+..-.+...-.+.+++-..-..
T Consensus        40 e~~p~~Al~sF~kVlelEgEKge--WGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt  117 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGE--WGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST  117 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccch--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence            45799999999999998655332  3456788888899999999999999999887665432222222333333333334


Q ss_pred             cCCHHHHHHHHHHHHHhh
Q 028333          190 LGDLERAARFYDKYISRL  207 (210)
Q Consensus       190 ~g~~~~A~~~~~~al~~~  207 (210)
                      ..+.+.-.++|+..++..
T Consensus       118 S~~m~LLQ~FYeTTL~AL  135 (440)
T KOG1464|consen  118 SKNMDLLQEFYETTLDAL  135 (440)
T ss_pred             hhhhHHHHHHHHHHHHHH
Confidence            556666666776665543

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=85.02  E-value=2.8  Score=39.50  Aligned_cols=56  Identities=18%  Similarity=0.167  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ  150 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~  150 (210)
                      ........+|..|+..|.+..|+.+|..|+.+++..+|..+.+.++-+++.+....
T Consensus       240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~  295 (1185)
T PF08626_consen  240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLL  295 (1185)
T ss_pred             hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHH
Confidence            34555677999999999999999999999999999999999999999988776543

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=84.83  E-value=2.5  Score=30.71  Aligned_cols=88  Identities=16%  Similarity=0.149  Sum_probs=63.3

Q ss_pred             CCCHHHHHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Q 028333          110 NQDLEKAFT-EFKAALELAQNVKDPIEEKKAARGLGASLQR-----QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI  183 (210)
Q Consensus       110 ~~~~~~A~~-~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  183 (210)
                      +|+|-++++ .|++|..+++..-+....+.+.+.+|.-+..     .+++..|+++++.+-.        ...+.+..++
T Consensus        40 LgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--------~n~~~aC~~~  111 (248)
T KOG4014|consen   40 LGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--------ANIPQACRYL  111 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--------cCCHHHHhhh
Confidence            345556665 4788888888877777778888888877764     4578899999998843        3356777888


Q ss_pred             HHHHHHc-----CC--HHHHHHHHHHHHH
Q 028333          184 ADCYTEL-----GD--LERAARFYDKYIS  205 (210)
Q Consensus       184 g~~y~~~-----g~--~~~A~~~~~~al~  205 (210)
                      |.++..-     ++  ..+|.+++.++-+
T Consensus       112 gLl~~~g~~~r~~dpd~~Ka~~y~traCd  140 (248)
T KOG4014|consen  112 GLLHWNGEKDRKADPDSEKAERYMTRACD  140 (248)
T ss_pred             hhhhccCcCCccCCCCcHHHHHHHHHhcc
Confidence            8887652     22  6788888887754

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=84.66  E-value=7.3  Score=34.34  Aligned_cols=32  Identities=13%  Similarity=0.064  Sum_probs=23.7

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL  124 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  124 (210)
                      ++..-.++.++|..+..+..|++|.+||...-
T Consensus       792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~  823 (1189)
T KOG2041|consen  792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG  823 (1189)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34445577888888888888888888887643

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=83.73  E-value=24  Score=29.32  Aligned_cols=99  Identities=12%  Similarity=0.110  Sum_probs=67.6

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKK--EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA  140 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~  140 (210)
                      +..+...+..+|.....+..+........++-  ..-.+.-.+..||+.+++.+.|+..-.+.+.+.+.      ...-.
T Consensus       192 ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~------~frnH  265 (569)
T PF15015_consen  192 YAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS------YFRNH  265 (569)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc------hhhHH
Confidence            45555667777777665443333211111111  12224466899999999999999999999886554      55556


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333          141 RGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      ...+.++..+.+|.+|-..+.-+.=+.
T Consensus       266 LrqAavfR~LeRy~eAarSamia~ymy  292 (569)
T PF15015_consen  266 LRQAAVFRRLERYSEAARSAMIADYMY  292 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677889999999999998887776554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=83.61  E-value=6.7  Score=24.77  Aligned_cols=65  Identities=18%  Similarity=0.215  Sum_probs=42.7

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Q 028333          132 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY  200 (210)
Q Consensus       132 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~  200 (210)
                      ..+....+.+.++..+...|+++.|++.+-..++..+.    +....+...+=.++..+|.-+--...|
T Consensus        17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~----~~~~~ar~~ll~~f~~lg~~~plv~~~   81 (90)
T PF14561_consen   17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD----YEDDAARKRLLDIFELLGPGDPLVSEY   81 (90)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT----CCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----ccccHHHHHHHHHHHHcCCCChHHHHH
Confidence            56777889999999999999999999999888766432    222355666667777777744333333

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=82.81  E-value=8.7  Score=29.67  Aligned_cols=72  Identities=17%  Similarity=0.175  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          133 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       133 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      .........++=..+...++++.|..+.++.+.+.      |..+.-..-.|.+|..+|.+.-|+.-++..++..++|
T Consensus       177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~------P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~  248 (269)
T COG2912         177 REILSRLLRNLKAALLRELQWELALRVAERLLDLN------PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD  248 (269)
T ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhC------CCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence            44466677888888999999999999999998885      5556667778999999999999999998877766543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=82.59  E-value=12  Score=30.48  Aligned_cols=90  Identities=18%  Similarity=0.207  Sum_probs=54.5

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHH---HhC--CCcchHHHHHHHHH
Q 028333          112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI-KYHSMVLQISE---REG--EYSGSTEAYGAIAD  185 (210)
Q Consensus       112 ~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~~---~~~--~~~~~~~~~~~lg~  185 (210)
                      ..++|+..|.++.++-+.       ...-.|++.+....|.-.... +.-+-++++..   +.+  +....-..+-.++.
T Consensus       241 ~ldkAi~~Y~kgFe~~~~-------~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~E  313 (374)
T PF13281_consen  241 SLDKAIEWYRKGFEIEPD-------YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLE  313 (374)
T ss_pred             HHHHHHHHHHHHHcCCcc-------ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence            478888899988885421       223345666666666543333 32222222221   111  11223445666777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhhc
Q 028333          186 CYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       186 ~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +....|++++|.+++++++...+
T Consensus       314 a~vL~~d~~ka~~a~e~~~~l~~  336 (374)
T PF13281_consen  314 ASVLAGDYEKAIQAAEKAFKLKP  336 (374)
T ss_pred             HHHHcCCHHHHHHHHHHHhhcCC
Confidence            88889999999999999987654

>smart00101 14_3_3 14-3-3 homologues

Probab=82.00  E-value=21  Score=27.32  Aligned_cols=74  Identities=12%  Similarity=0.062  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHh-cC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 028333           94 KEELLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASLQRQGKYREAIKYH  160 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~l~~~-~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~  160 (210)
                      +..+.-+-..|..|...-.          .++|...|++|++++.. +.  ++...+.+++.--..|-..++.++|....
T Consensus       115 eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lA  194 (244)
T smart00101      115 ESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLA  194 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4445555567777765433          45888999999999876 32  33444444444444455689999999888


Q ss_pred             HHHHHHH
Q 028333          161 SMVLQIS  167 (210)
Q Consensus       161 ~~al~~~  167 (210)
                      ++++..+
T Consensus       195 k~afd~A  201 (244)
T smart00101      195 KQAFDEA  201 (244)
T ss_pred             HHHHHHH
Confidence            8887665

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=81.99  E-value=10  Score=23.90  Aligned_cols=38  Identities=16%  Similarity=0.287  Sum_probs=25.3

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  129 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  129 (210)
                      .++....+.+.+|..+...|+++.|++.+-..+...+.
T Consensus        17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~   54 (90)
T PF14561_consen   17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD   54 (90)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred             cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            34456677788888888888888888877776664433

>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=81.83  E-value=10  Score=30.59  Aligned_cols=68  Identities=25%  Similarity=0.303  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-C-hHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-D-PIEEKKAARGLGASLQRQGKYREAIKYH  160 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~-~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~  160 (210)
                      .+..+.-+...|+-++.++++++|...|..|..++.... . +.....+++..|.+++..++.+.+.-.+
T Consensus        37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n  106 (400)
T KOG4563|consen   37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN  106 (400)
T ss_pred             HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            455666778899999999999999999999999998754 2 3345678888899998888777655443

>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.90  E-value=19  Score=29.00  Aligned_cols=28  Identities=18%  Similarity=-0.015  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      ..++.+|.-|...+|++.|+-.|.++.+
T Consensus       126 ~~n~YkaLNYm~~nD~~~ArVEfnRan~  153 (449)
T COG3014         126 LINYYKALNYMLLNDSAKARVEFNRANE  153 (449)
T ss_pred             HHHHHHHhhHHHhcchhhhHHHHHHHHH
Confidence            4566677888888888777777776654

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.63  E-value=7.1  Score=23.89  Aligned_cols=34  Identities=12%  Similarity=0.218  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  129 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  129 (210)
                      .+..+...|.-.=..|+|++|+.+|.++++.+-.
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            4455677788888899999999999999987654

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.60  E-value=11  Score=23.06  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  129 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  129 (210)
                      .+..+...|.-+-..|++++|+.+|++++++.-+
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q   38 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ   38 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            4556677888899999999999999999997765

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=80.57  E-value=3.8  Score=19.29  Aligned_cols=25  Identities=24%  Similarity=0.597  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333          180 YGAIADCYTELGDLERAARFYDKYI  204 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~al  204 (210)
                      |..+=..|...|++++|.+.|++..
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~   27 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMR   27 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHh
Confidence            4555566666777777777666554

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=80.06  E-value=4.6  Score=30.50  Aligned_cols=56  Identities=25%  Similarity=0.268  Sum_probs=48.9

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333          106 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus       106 ~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      .....++.+.|.+.|.+++.++++      -...++.+|...-+.|+.+.|..-+++.+++.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~------w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld   59 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPE------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD   59 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCch------hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence            345678999999999999998876      56678899999999999999999999999875

>PF12854 PPR_1: PPR repeat

Probab=80.04  E-value=5.8  Score=19.77  Aligned_cols=27  Identities=22%  Similarity=0.553  Sum_probs=20.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDK  202 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~  202 (210)
                      ....|..+-..|.+.|+.++|.+.+++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            345677788888888888888887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-06
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		5e-05
3sf4_A	406	Crystal Structure Of The Complex Between The Conser		9e-05
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-04
4g2v_A	340	Structure Complex Of Lgn Binding With Frmpd1 Length		2e-04
3ro3_A	164	Crystal Structure Of LgnMINSCUTEABLE COMPLEX Length		2e-04
3ro2_A	338	Structures Of The LgnNUMA COMPLEX Length = 338		2e-04

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 90  VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 149
           +DP+  E    L  G  + +  D ++A   ++ ALEL     DP    +A   LG +  +
Sbjct: 30  LDPRSAEAWYNL--GNAYYKQGDYDEAIEYYQKALEL-----DP-RSAEAWYNLGNAYYK 81
Query: 150 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           QG Y EAI+Y+   L++  R      S EA+  + + Y + GD + A  +Y K
Sbjct: 82  QGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQK 128

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G  + +  D ++A   ++ ALEL  N        +A   LG +  +QG Y EAI+Y+   
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELYPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           L++      Y  + EA+  + + Y + GD + A  +Y K
Sbjct: 70  LEL------YPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102

>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved Cell Polarity Proteins Inscuteable And Lgn Length = 406

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G  ++   + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293
Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
           L I++   +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G  + +  D ++A   ++ ALEL     DP    +A   LG +  +QG Y EAI+Y+   
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALEL-----DP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           L++         + EA+  + + Y + GD + A  +Y K
Sbjct: 70  LELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQK 102

>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1 Length = 340

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G  ++   + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   
Sbjct: 232 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 291
Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
           L I++   +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 292 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 332

>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX Length = 164

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 54/112 (48%)
Query: 93  KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK 152
           K  E ++    G  ++   + E A   +K  L LA+ +KD   E ++   LG +      
Sbjct: 45  KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 104
Query: 153 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
           Y +AI YH   L I++   +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 105 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156

>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX Length = 338

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G  ++   + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   
Sbjct: 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289
Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
           L I++   +  G   A  ++ + YT LG+ ++A  F +K++
Sbjct: 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	8e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-13
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-12
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-09
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	6e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	8e-13
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-11
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-11
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-10
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-12
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	5e-10
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	6e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	6e-12
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-10
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	7e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	8e-11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	5e-08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	6e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-08
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	4e-08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	6e-06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	2e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	7e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	8e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	8e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	3e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	6e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	8e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-04

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 63.3 bits (155), Expect = 5e-13
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   L I++   
Sbjct: 64  EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           +  G   A  ++ + YT LG+ ++A  F +K
Sbjct: 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 63.3 bits (155), Expect = 5e-13
 Identities = 19/91 (20%), Positives = 42/91 (46%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           +   A    +  L +A+   D   E+ A   LG +    G++  A +Y+   L ++ +  
Sbjct: 24  NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           + +   ++  ++ + YT L D E+A  ++ K
Sbjct: 84  DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 114

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 54.5 bits (132), Expect = 8e-10
 Identities = 18/60 (30%), Positives = 31/60 (51%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           LG +    G +R+A+  H   L I++  G+ +    AY  + + Y  LG+ E A+ +Y K
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           D EKA       L +AQ +KD I E +A   LG +    G + +A+ +    L+IS   G
Sbjct: 104 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 163

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 65.8 bits (161), Expect = 5e-13
 Identities = 19/91 (20%), Positives = 43/91 (47%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           D + A    +  L +A+   D   E++A   LG S    G++ +A +++   L ++   G
Sbjct: 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           E     ++  ++ + YT L +   A  ++++
Sbjct: 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 22/93 (23%), Positives = 45/93 (48%)

Query: 110 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 169
            + L +A   ++  L+L +++ D   + +A   LG +    G ++ AI++H   L+I+  
Sbjct: 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255

Query: 170 EGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
            G+ +    A   + + +  LG  E AA  Y +
Sbjct: 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           D       F+AA++     +D          LG +    G Y +A++YH   L +++   
Sbjct: 63  DCRAGVAFFQAAIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN 120

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           +  G  ++ G + +    +G  + AA   ++
Sbjct: 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCER 151

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 22/93 (23%), Positives = 47/93 (50%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
             E A   +K  L LA  + +   E ++   LG +     ++  AI+YH+  L I++  G
Sbjct: 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
           +  G   A  ++ + ++ +G  ERA ++ ++++
Sbjct: 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 22/98 (22%), Positives = 39/98 (39%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           D  KA    K  L LA+++ D + E K++  LG +L+  G++ EA       L ++ + G
Sbjct: 101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG 160

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209
           +      A   + + Y   G                E+
Sbjct: 161 DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 2/105 (1%)

Query: 98  LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI 157
           LS      + L                +                  G  L   G  R  +
Sbjct: 9   LSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGV 68

Query: 158 KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
            +    +Q      +    +  Y  + + Y  LGD  +A +++  
Sbjct: 69  AFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 18/115 (15%)

Query: 106 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY----------- 153
           N L+     ++A    +  L LA+ + D + E +A   LG     +GK+           
Sbjct: 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193

Query: 154 ------REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
                   A++++   L++    G+      A G + + Y  LGD + A   + +
Sbjct: 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 11/72 (15%), Positives = 14/72 (19%)

Query: 139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR 198
           +A     S    G        H    Q        S          +     GD      
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69

Query: 199 FYDKYISRLESD 210
           F+   I     D
Sbjct: 70  FFQAAIQAGTED 81

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167
            +   A       L +AQ + D I E +A   LG +    G +  A+KY    LQ++
Sbjct: 317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 65.2 bits (159), Expect = 8e-13
 Identities = 24/99 (24%), Positives = 43/99 (43%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
             NFL  +  E A + F+ A  +A+  K P    +    +G     Q +Y +AI Y    
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           + + E         +AY  I   + +LG +++A  ++ K
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 61.8 bits (150), Expect = 1e-11
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G   L  ++   A   FK A      VKD IE+ +    +  S     +   ++ Y    
Sbjct: 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169

Query: 164 LQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYDK 202
            +I +    Y+    + +   A  + +L   E A   + K
Sbjct: 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQK 209

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 12/97 (12%), Positives = 30/97 (30%), Gaps = 5/97 (5%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAAR---GLGASLQRQGKYREAIKYHSMVLQISE 168
               +    + A E+ +  +      +  +       +     +Y +AI +      ++E
Sbjct: 158 QTYFSMDYARQAYEIYKEHEA--YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE 215

Query: 169 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
            E +          I  C       E A  ++ + I+
Sbjct: 216 AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 35/136 (25%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G         E A   FK A+ + +         +A   +     + GK  +A +YHS  
Sbjct: 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290

Query: 164 LQIS-----------------------------------EREGEYSGSTEAYGAIADCYT 188
           +  S                                   E +  Y+   +    +A  Y 
Sbjct: 291 MAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350

Query: 189 ELGDLERAARFYDKYI 204
           E  + ++A+ ++ K  
Sbjct: 351 ERKNFQKASAYFLKVE 366

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 10/91 (10%), Positives = 28/91 (30%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           + +   ++    ++  Q     + E       G     Q +Y  AIK+            
Sbjct: 78  EEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVK 137

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           +     E +  +++ Y  +     +  +  +
Sbjct: 138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 26/98 (26%), Positives = 41/98 (41%)

Query: 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170
           QD EKA       L +AQ + D I E +A   LG +    G + +A+ +    L+IS   
Sbjct: 281 QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340

Query: 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208
           G+ SG   A   ++D    LG             + ++
Sbjct: 341 GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEID 378

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 62.3 bits (152), Expect = 9e-12
 Identities = 24/92 (26%), Positives = 43/92 (46%)

Query: 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170
             L+ A   ++  L L   + D   + +A   LG +    G +R+A+  H   L I++  
Sbjct: 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220

Query: 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           G+ +    AY  + + Y  LG+ E A+ +Y K
Sbjct: 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   L I++   
Sbjct: 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           +  G   A  ++ + YT LG+ ++A  F +K
Sbjct: 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 19/91 (20%), Positives = 43/91 (47%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           +   A    +  L +A+   D   E++A   LG +    G++  A +Y+   L ++ +  
Sbjct: 202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           + +   ++  ++ + YT L D E+A  ++ K
Sbjct: 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G+   ++ D     + F+AA+++    +D          LG +      Y +A++YH   
Sbjct: 16  GERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 73

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           L ++   G+  G  +A G + +    LG+ + A     +
Sbjct: 74  LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 26/98 (26%), Positives = 36/98 (36%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           D  KA       L LA+ + D + E KA+  LG +L+  G + EAI      L IS    
Sbjct: 62  DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 121

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209
           +  G   A   + + Y   G         D      E 
Sbjct: 122 DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 17/111 (15%), Positives = 44/111 (39%), Gaps = 20/111 (18%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK------------------- 152
           + ++A    +  L++++ + D + E +A   LG     +GK                   
Sbjct: 102 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161

Query: 153 -YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
             + A+ ++   L +    G+ +    A+G + + +  LG+   A   +++
Sbjct: 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
            G  L + G  R  + +    +Q+     +    +  Y  + + Y  L D  +A  ++  
Sbjct: 15  EGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 62.3 bits (152), Expect = 2e-12
 Identities = 14/88 (15%), Positives = 31/88 (35%)

Query: 115 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 174
           +A     A  +    +  P     A   LG       ++ EA      + Q +++ G+++
Sbjct: 4   EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63

Query: 175 GSTEAYGAIADCYTELGDLERAARFYDK 202
               A   +       G+ + A R + +
Sbjct: 64  AEHRALHQVGMVERMAGNWDAARRCFLE 91

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
             ++A   F+A  + AQ   D   E +A   +G   +  G +  A +      ++     
Sbjct: 41  RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP 100

Query: 172 E-YSGSTEAYGAIADCYTELGDLERAARFYDK 202
           E    ++     +A      GDL  A + Y+K
Sbjct: 101 EDPLAASANAYEVATVALHFGDLAGARQEYEK 132

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 55.7 bits (135), Expect = 5e-10
 Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 112 DLEKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170
           + + A   F    EL  ++ +DP+     A  +       G    A + +   L  +++ 
Sbjct: 81  NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140

Query: 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
            +      A+  + D   +  +L  A + + +
Sbjct: 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 18/81 (22%), Positives = 28/81 (34%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           DL  A  E++ +L  AQ   D +    A RGLG   Q++    EA ++      I     
Sbjct: 122 DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181

Query: 172 EYSGSTEAYGAIADCYTELGD 192
           +     E    +         
Sbjct: 182 DSEAVNELMTRLNGLEHHHHH 202

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 62.2 bits (151), Expect = 6e-12
 Identities = 18/105 (17%), Positives = 32/105 (30%)

Query: 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 160
           L      +   DL KA   ++ A  + +N +   +  +        L RQ K+ EA    
Sbjct: 119 LDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASL 178

Query: 161 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
                + +    Y    +   A         D   A +   +  S
Sbjct: 179 QKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 1/107 (0%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
              F   + LE+A   +    E   N +      KA    G  L+   +  EA++Y    
Sbjct: 43  AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA 102

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210
             +    G    +  A         E  DL +A   Y +  +  E++
Sbjct: 103 SVMYVENGTPDTAAMALDRAGKLM-EPLDLSKAVHLYQQAAAVFENE 148

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 5/63 (7%), Positives = 19/63 (30%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
              + +   +  +A   +    +          + +A+        +L  +  A ++ +K
Sbjct: 42  AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEK 101

Query: 203 YIS 205
              
Sbjct: 102 ASV 104

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           D     + F+AA+++    +D          LG +      Y +A++YH   L ++   G
Sbjct: 20  DCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 77

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           +  G  +A G + +    LG+ + A     +
Sbjct: 78  DQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 24/92 (26%), Positives = 43/92 (46%)

Query: 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170
             L+ A   ++  L L   + D   + +A   LG +    G +R+A+  H   L I++  
Sbjct: 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216

Query: 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           G+ +    AY  + + Y  LG+ E A+ +Y K
Sbjct: 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 19/91 (20%), Positives = 43/91 (47%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           +   A    +  L +A+   D   E++A   LG +    G++  A +Y+   L ++ +  
Sbjct: 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           + +   ++  ++ + YT L D E+A  ++ K
Sbjct: 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 59.2 bits (144), Expect = 9e-11
 Identities = 27/91 (29%), Positives = 45/91 (49%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           + E A   +K  L LA+ +KD   E ++   LG +      Y +AI YH   L I++   
Sbjct: 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           +  G   A  ++ + YT LG+ ++A  F +K
Sbjct: 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 25/91 (27%), Positives = 35/91 (38%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           D  KA       L LA+ + D + E KA+  LG +L+  G + EAI      L IS    
Sbjct: 58  DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           +  G   A   + + Y   G         D 
Sbjct: 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDT 148

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 17/111 (15%), Positives = 43/111 (38%), Gaps = 20/111 (18%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK------------------- 152
           + ++A    +  L++++ + D + E +A   LG     +GK                   
Sbjct: 98  NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157

Query: 153 -YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
             + A+  +   L +    G+ +    A+G + + +  LG+   A   +++
Sbjct: 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 208

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 21/62 (33%), Positives = 31/62 (50%)

Query: 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170
           QD EKA       L +AQ +KD I E +A   LG +    G + +A+ +    L+IS   
Sbjct: 277 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336

Query: 171 GE 172
           G+
Sbjct: 337 GD 338

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.5 bits (106), Expect = 8e-06
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
            G  L + G  R  + +    +Q+     +    +  Y  + + Y  L D  +A  ++  
Sbjct: 11  EGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 59.8 bits (145), Expect = 5e-11
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 1/102 (0%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G      ++  +A   ++ A +    V D IE+ +    +  +     +   ++ +    
Sbjct: 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167

Query: 164 LQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYDKYI 204
           L I +    YS  T ++   IA  Y +    ++A    +  +
Sbjct: 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 59.4 bits (144), Expect = 8e-11
 Identities = 17/105 (16%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
             N+   +  +KA    +AALELA ++++      +   +  S  R G  + A+++    
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208
            ++S  +       +    ++    + G  ++A +F ++ +  + 
Sbjct: 249 AKVSREKVPDLLP-KVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAAR---GLGASLQRQGKYREAIKYHSMVLQISE 168
               +      AL++ Q    P+   +  +    +  +      Y +A+ +    L+++ 
Sbjct: 156 QTHVSMYHILQALDIYQ--NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM 213

Query: 169 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
                     +   IA+ Y   GD + A   + K   
Sbjct: 214 DIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA--RGLGASLQRQGKYREAIKYHS 161
                +    +KAF   +  L+          ++     + +      + K  + + Y  
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF- 326

Query: 162 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
                 E++  ++       + A  +      E+AA FY K +
Sbjct: 327 ------EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 14/97 (14%), Positives = 29/97 (29%)

Query: 106 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 165
              +        TE    +E  Q     + +  +    G     Q +Y EAI Y+    +
Sbjct: 70  EPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEK 129

Query: 166 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
                 +     E +  +A+ Y  +     +     +
Sbjct: 130 ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR---GLGASLQRQGKYREAIKYH 160
           G    +N + + A   F  ALE  + + + +   K       LG   ++  KY EA+ YH
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

Query: 161 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
              L +  +          Y AI   ++ +G+ E A  ++   + 
Sbjct: 260 RQALVLIPQNA------STYSAIGYIHSLMGNFENAVDYFHTALG 298

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 13/107 (12%), Positives = 38/107 (35%), Gaps = 12/107 (11%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G +F    + ++A   +  A +L +    P+        +G         + A ++ S  
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPM------LYIGLEYGLTNNSKLAERFFSQA 185

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210
           L I+               +     + G+ + A +++   + ++++ 
Sbjct: 186 LSIA------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 20/135 (14%), Positives = 35/135 (25%), Gaps = 19/135 (14%)

Query: 67  IESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL 126
            + +  +L              +   K E LL+ L  G    + +   +A    + AL L
Sbjct: 213 EKWFLDALEKIK-----AIGNEVTVDKWEPLLNNL--GHVCRKLKKYAEALDYHRQALVL 265

Query: 127 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 186
                           +G      G +  A+ Y    L +          T +   +  C
Sbjct: 266 IPQ------NASTYSAIGYIHSLMGNFENAVDYFHTALGLR------RDDTFSVTMLGHC 313

Query: 187 YTELGDLERAARFYD 201
                    A    D
Sbjct: 314 IEMYIGDSEAYIGAD 328

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 14/121 (11%)

Query: 90  VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 149
           +     E L  L  G N  +    + A   F+A   L     D   + +   GLGA  Q 
Sbjct: 13  LSEDTLEQLYAL--GFNQYQAGKWDDAQKIFQALCML-----DH-YDARYFLGLGACRQS 64

Query: 150 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209
            G Y +A++ +S    +                 A+C+ +LGDL+ A   +    +   +
Sbjct: 65  LGLYEQALQSYSYGALMD------INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

Query: 210 D 210
            
Sbjct: 119 Q 119

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 7/103 (6%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR-GLGASLQRQGKYREAIKYHSM 162
           G       D++ A   F+ AL L +  +   +   A    LG + ++   Y  AI   + 
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541

Query: 163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
            L +S      +     + AIA  Y        A     + ++
Sbjct: 542 GLLLS------TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G   ++  ++  A    +++  L Q   DP+        LG     +   + AI +    
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQY--DPL----LLNELGVVAFNKSDMQTAINHFQNA 501

Query: 164 LQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           L + ++           +  +   Y +L   + A    ++ + 
Sbjct: 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 12/99 (12%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
                               LE+     D            ASL   G+  +     + +
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYP------LHLASLHESGEKNKLYLISNDL 365

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           +        +      + A+   Y  +  +  A R++ K
Sbjct: 366 VDR------HPEKAVTWLAVGIYYLCVNKISEARRYFSK 398

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 12/99 (12%)

Query: 107 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166
           F    + ++A + +  A  L Q    P         LG    + G    A +Y      +
Sbjct: 417 FAIEGEHDQAISAYTTAARLFQGTHLPY------LFLGMQHMQLGNILLANEYLQSSYAL 470

Query: 167 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
                           +        D++ A   +   + 
Sbjct: 471 F------QYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 12/95 (12%)

Query: 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170
             + +A   F  +  +            A  G   S   +G++ +AI  ++   ++    
Sbjct: 387 NKISEARRYFSKSSTMDPQFGP------AWIGFAHSFAIEGEHDQAISAYTTAARL---- 436

Query: 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
             + G+   Y  +   + +LG++  A  +     +
Sbjct: 437 --FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 9/104 (8%), Positives = 33/104 (31%), Gaps = 12/104 (11%)

Query: 102 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 161
               N   ++D  +   ++ +++   +   D             +L  + ++ + +   +
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSD------LLLCKADTLFVRSRFIDVLAITT 329

Query: 162 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
            +L+I         + + Y        E G+  +     +  + 
Sbjct: 330 KILEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 12/92 (13%)

Query: 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170
            +  K +      ++       P E+      +G       K  EA +Y S    +    
Sbjct: 353 GEKNKLYLISNDLVDR-----HP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--- 403

Query: 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
                   A+   A  +   G+ ++A   Y  
Sbjct: 404 ---PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 4e-09
 Identities = 44/256 (17%), Positives = 76/256 (29%), Gaps = 81/256 (31%)

Query: 2   LTTPFKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVN-EQLRQINAA 60
           L    + L    E   +    P  L  ++I  ++   LA       + VN ++L  I   
Sbjct: 311 LDCRPQDLPR--EVLTT---NPRRL--SIIAESIRDGLATWDN--WKHVNCDKLTTI--- 358

Query: 61  LRRQAKIESYAP--------SLSYAPVGSRIPEDEVIV----DPKKEELLSRLKTGKNFL 108
              ++ +    P         LS  P  + IP   ++     D  K +++  +    N L
Sbjct: 359 --IESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-ILLSLIWFDVIKSDVMVVV----NKL 411

Query: 109 RNQDL-EKAFTEFKAAL-ELAQNVKDPIEEKKAARGLGASLQRQ--GKYREA-------- 156
               L EK   E   ++  +   +K  +E + A       L R     Y           
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYA-------LHRSIVDHYNIPKTFDSDDL 464

Query: 157 ------------IKYHSMVLQISEREGEYS--------------GSTEAYGAIADCYTEL 190
                       I +H   ++  ER   +                 + A+ A       L
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524

Query: 191 GDLERAARFYDKYISR 206
             L    +FY  YI  
Sbjct: 525 QQL----KFYKPYICD 536

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 14/117 (11%)

Query: 90  VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 149
           +     + +       +F     +E+A   F+          D         GL A  Q 
Sbjct: 31  IPDDMMDDIYSY--AYDFYNKGRIEEAEVFFRFLCIY-----DF-YNVDYIMGLAAIYQI 82

Query: 150 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206
           + ++++A   +++   + +                 C   L    +A   ++  I  
Sbjct: 83  KEQFQQAADLYAVAFALGK------NDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 11/92 (11%), Positives = 21/92 (22%), Gaps = 6/92 (6%)

Query: 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170
                      +   L      P +              +G+  EA  +   +       
Sbjct: 10  SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69

Query: 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
            +Y         +A  Y      ++AA  Y  
Sbjct: 70  VDY------IMGLAAIYQIKEQFQQAADLYAV 95

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 18/115 (15%), Positives = 44/115 (38%), Gaps = 8/115 (6%)

Query: 96  ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYRE 155
           +L   +++ +  +R+     A +++++ ++            ++   +     +  K  E
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVE 313

Query: 156 AIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210
           AI+  S VLQ+         +  A    A+ Y      + A + Y+      E+D
Sbjct: 314 AIRVCSEVLQM------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 12/110 (10%)

Query: 93  KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK 152
           K +E+        N   + D   A       LE+         + +          ++G+
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKEGE 192

Query: 153 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
            R+AI       ++       + +TEA+  I+  Y +LGD E +     +
Sbjct: 193 PRKAISDLKAASKLK------NDNTEAFYKISTLYYQLGDHELSLSEVRE 236

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 12/105 (11%)

Query: 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 160
           L+ GK  L    L  A ++F AA++      DP +   A           GK + A+   
Sbjct: 30  LELGKKLLAAGQLADALSQFHAAVDG-----DP-DNYIAYYRRATVFLAMGKSKAALPDL 83

Query: 161 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           + V+Q+          T A         + G L+ A   + K + 
Sbjct: 84  TKVIQLK------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL------GASLQRQGKYREAI 157
              + +  D E + +E +  L+L Q+ K      K  + L         L R G+Y +A 
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277

Query: 158 KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
             +  V++      EY  +  +   I  C+++      A R   + + 
Sbjct: 278 SKYESVMKTEPSIAEY--TVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G + L+  +L +A   F+A  +     ++      A R LG +     K   AI   +  
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQKEPEREE------AWRSLGLTQAENEKDGLAIIALNHA 77

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
             +  +          + A+A  +T   +   A      ++ 
Sbjct: 78  RMLDPK------DIAVHAALAVSHTNEHNANAALASLRAWLL 113

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 51.2 bits (122), Expect = 4e-08
 Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 1/110 (0%)

Query: 102 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 161
           +    +   ++L  A   F  A +  +   +  E            +  G    A+    
Sbjct: 42  QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101

Query: 162 MVLQISEREGEYSGSTEAYGAIADCY-TELGDLERAARFYDKYISRLESD 210
             +QI    G++         + +    +L D  +A   Y+        D
Sbjct: 102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 1/104 (0%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL-QRQGKYREAIKYHSM 162
            K F    +   A    + A+++  +             LG  L      Y +AI  + +
Sbjct: 84  YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143

Query: 163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206
             +   ++   + S + +   AD     G    A+  Y K I  
Sbjct: 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 1/96 (1%)

Query: 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK-YHSMVLQISER 169
            D  KA   ++ A E     +      K            G+Y EA   Y  ++      
Sbjct: 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191

Query: 170 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
                   + +     C     D   AAR   +  S
Sbjct: 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 97  LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREA 156
           L   +++ +  +R+     A +++++ ++            ++   +     +  K  EA
Sbjct: 234 LNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA 291

Query: 157 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           I+  S VLQ+         +  A    A+ Y      + A + Y+    
Sbjct: 292 IRICSEVLQMEPD------NVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           GK  L    L  A ++F AA++      DP +   A           GK + A+   + V
Sbjct: 10  GKKLLAAGQLADALSQFHAAVDG-----DP-DNYIAYYRRATVFLAMGKSKAALPDLTKV 63

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           + +          T A         + G L+ A   + K + 
Sbjct: 64  IALK------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 99

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 12/110 (10%)

Query: 93  KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK 152
           K +E+        +     D   A T     LE+         + +          ++G+
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW------DAELRELRAECFIKEGE 169

Query: 153 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
            R+AI       ++       S +TEA+  I+  Y +LGD E +     +
Sbjct: 170 PRKAISDLKAASKLK------SDNTEAFYKISTLYYQLGDHELSLSEVRE 213

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 19/121 (15%)

Query: 95  EELLSRLKTGKNFLRNQDLEKAFTEFKAALEL----------AQNVKDPIEEKKAARGLG 144
           +E+L +       +      +A + F+  + L              K+     K A  L 
Sbjct: 5   DEMLQK---VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61

Query: 145 ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
            + ++   Y +A  ++  +LQ          + +   A A+     G  + A R Y+K +
Sbjct: 62  LAYKKNRNYDKAYLFYKELLQK------APNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115

Query: 205 S 205
            
Sbjct: 116 Q 116

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 14/116 (12%), Positives = 30/116 (25%), Gaps = 15/116 (12%)

Query: 91  DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 150
            P   + L      +  +     + A   ++  L+L     +  +   A   LG      
Sbjct: 84  APNNVDCLEAC--AEMQVCRGQEKDALRMYEKILQL-----EA-DNLAANIFLGNYYYLT 135

Query: 151 G-KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
             + ++ ++     L    +         A              E+A     K I 
Sbjct: 136 AEQEKKKLETDYKKLSSPTK------MQYARYRDGLSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 13/103 (12%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
              + +N++ +KA+  +K  L+ A N  D +E              +G+ ++A++ +  +
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLE------ACAEMQVCRGQEKDALRMYEKI 114

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAA-RFYDKYIS 205
           LQ+       + +  A   + + Y    + E+       K +S
Sbjct: 115 LQLE------ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 11/101 (10%)

Query: 106 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164
            FL  Q   E+A+     A +     +      +    LG    +  K  +A +Y    L
Sbjct: 113 GFLYEQKRYEEAYQRLLEASQDTLYPERS----RVFENLGLVSLQMKKPAQAKEYFEKSL 168

Query: 165 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           +++               +AD   +  +   A ++YD +  
Sbjct: 169 RLN------RNQPSVALEMADLLYKEREYVPARQYYDLFAQ 203

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           + + A  E++ AL                   G  L  Q +Y EA +      Q +    
Sbjct: 86  EPKLADEEYRKALASDSRNAR------VLNNYGGFLYEQKRYEEAYQRLLEASQDT---- 135

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
            Y   +  +  +     ++    +A  +++K + 
Sbjct: 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 12/100 (12%)

Query: 107 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166
            L+ +   +A   F+ +L L     +   +   A  +   L ++ +Y  A +Y+ +  Q 
Sbjct: 151 SLQMKKPAQAKEYFEKSLRL-----NR-NQPSVALEMADLLYKEREYVPARQYYDLFAQG 204

Query: 167 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206
                    +  +            D + AA +  +    
Sbjct: 205 G------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 38.0 bits (89), Expect = 9e-04
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           LG    ++G   +A       L+I         S +A+ A+A  +    + + A   Y K
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKALEID------PSSADAHAALAVVFQTEMEPKLADEEYRK 96

Query: 203 YIS 205
            ++
Sbjct: 97  ALA 99

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 14/102 (13%), Positives = 37/102 (36%), Gaps = 12/102 (11%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           GK  ++      A  +++AA++      D          +G+    +G +  AI+Y    
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDTTRLD------MYGQIGSYFYNKGNFPLAIQYMEKQ 134

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           ++ +      +   + +  +   Y    +  +A   + K + 
Sbjct: 135 IRPT------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLE 170

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 15/105 (14%)

Query: 104 GKNFLRNQDLEKA---FTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 160
              +      + A      + + +   +               G  L ++G+   AI+ +
Sbjct: 44  AVCYYELAKYDLAQKDIETYFSKVNATKAKSA------DFEYYGKILMKKGQDSLAIQQY 97

Query: 161 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
              +         +   + YG I   +   G+   A ++ +K I 
Sbjct: 98  QAAVDRD------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 12/102 (11%), Positives = 19/102 (18%), Gaps = 9/102 (8%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
                +N +  +A   F            P                  KY  A K     
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAK--KYNSP----YIYNRRAVCYYELAKYDLAQKDIETY 63

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
                     S     +        + G    A + Y   + 
Sbjct: 64  FSKVNATKAKS---ADFEYYGKILMKKGQDSLAIQQYQAAVD 102

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLG-ASLQRQGKYREAIKYHSM 162
           G+ +  N++  KA + F   LEL  N+          R    A+     K   A  Y+  
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNIYIGY----LWRARANAAQDPDTKQGLAKPYYEK 204

Query: 163 VLQISEREGEYSGS--TEAYGAIADCYTELGDLERAARFYDKYIS 205
           ++++    G        EA   IA  YT   D  +A   +   ++
Sbjct: 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
               L +   Y EAI+  + +            S   Y   A CY EL   + A +  + 
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAK------KYNSPYIYNRRAVCYYELAKYDLAQKDIET 62

Query: 203 YISRLESD 210
           Y S++ + 
Sbjct: 63  YFSKVNAT 70

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 15/105 (14%), Positives = 26/105 (24%), Gaps = 15/105 (14%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G  F    +   A    +  +                  LG +     +Y +A      V
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPK------VFYELGQAYYYNKEYVKADSSFVKV 168

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLER---AARFYDKYIS 205
           L++             Y   A          +   A  +Y+K I 
Sbjct: 169 LEL------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 26/116 (22%), Positives = 38/116 (32%), Gaps = 14/116 (12%)

Query: 90  VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 149
           +     E L  L    N  ++   E A   F+A   L     D   + +   GLGA  Q 
Sbjct: 16  ISSDTLEQLYSL--AFNQYQSGXYEDAHXVFQALCVL-----DH-YDSRFFLGLGACRQA 67

Query: 150 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
            G+Y  AI  +S    +   E             A+C  + G+L  A         
Sbjct: 68  MGQYDLAIHSYSYGAVMDIXE------PRFPFHAAECLLQXGELAEAESGLFLAQE 117

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 48.3 bits (116), Expect = 4e-07
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 103 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 162
           T     + ++ EK   + +A   +     +P E+ + AR  G     +  +  A+K ++ 
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYV-----NP-EKAEEARLEGKEYFTKSDWPNAVKAYTE 164

Query: 163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           +++ +            Y   A    +L     A    +K I 
Sbjct: 165 MIKRA------PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G  F + +  ++A   +  A EL +++              A+   +G+Y  AI   +  
Sbjct: 12  GNKFYKARQFDEAIEHYNKAWELHKDIT-------YLNNRAAAEYEKGEYETAISTLNDA 64

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
           ++              Y  I+  +  +G+         K I
Sbjct: 65  VEQ------GREMRADYKVISKSFARIGNAYHKLGDLKKTI 99

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 13/103 (12%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
            K+F R  +      + K  +E  Q                  L +     + +K     
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEYYQKSL-------TEHRTADILTKLRNAEKELKKAEAE 131

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206
             ++    E +   E        Y    D   A + Y + I R
Sbjct: 132 AYVNP---EKA---EEARLEGKEYFTKSDWPNAVKAYTEMIKR 168

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 13/94 (13%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           + E A +    A+E         E +   + +  S  R G     +      ++      
Sbjct: 53  EYETAISTLNDAVEQ-----GR-EMRADYKVISKSFARIGNAYHKLGDLKKTIEY----- 101

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
            Y  S   +   AD  T+L + E+  +  +    
Sbjct: 102 -YQKSLTEHR-TADILTKLRNAEKELKKAEAEAY 133

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G + L+  +L +A   F+A  +       P E ++A R LG +     K   AI   +  
Sbjct: 28  GLSMLKLANLAEAALAFEAVCQA-----AP-EREEAWRSLGLTQAENEKDGLAIIALNHA 81

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
             +             + A+A  +T   +   A      ++ 
Sbjct: 82  RMLD------PKDIAVHAALAVSHTNEHNANAALASLRAWLL 117

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 107 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166
           +  + + + A    + A+EL     D     +    LGA+L    + +EA+  ++  L I
Sbjct: 182 YNLSNNYDSAAANLRRAVEL--RPDDA----QLWNKLGATLANGNRPQEALDAYNRALDI 235

Query: 167 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           +       G       +A  Y+ +   + AA+   + I 
Sbjct: 236 N------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 12/108 (11%), Positives = 29/108 (26%), Gaps = 16/108 (14%)

Query: 108 LRNQ-DLEKAFTEFKAALEL---------AQNVKDPIEEKKAARGLGASLQRQGKYREAI 157
             N+ +   A    +A L                D   +    +          +YRE  
Sbjct: 99  HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR 158

Query: 158 KYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
                 L+++          + + ++   Y    + + AA    + + 
Sbjct: 159 TLLHAALEMN------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVE 200

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.6 bits (114), Expect = 5e-07
 Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 12/105 (11%)

Query: 106 NFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
            FL  +     ++   F  AL              A    G    +QG++  A  Y    
Sbjct: 84  WFLCGRLNRPAESMAYFDKALADPTYPTPY----IANLNKGICSAKQGQFGLAEAYLKRS 139

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 208
           L              A+  +A      G L  A  ++ KY SR+E
Sbjct: 140 LAAQ------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 12/102 (11%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G   L+  DL       +AA+       +      A + LG +       + AI      
Sbjct: 72  GLKRLKEGDLPVTILFMEAAILQDPGDAE------AWQFLGITQAENENEQAAIVALQRC 125

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           L++         + +A  A+A  YT     + A      +I 
Sbjct: 126 LELQ------PNNLKALMALAVSYTNTSHQQDACEALKNWIK 161

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 12/99 (12%)

Query: 107 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166
           F  + +  +A   F AAL +    +D          LGA+L    +  EA++ ++  L+I
Sbjct: 223 FHLSGEFNRAIDAFNAALTV--RPEDY----SLWNRLGATLANGDRSEEAVEAYTRALEI 276

Query: 167 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
                   G   +   +      LG    A   +   +S
Sbjct: 277 Q------PGFIRSRYNLGISCINLGAYREAVSNFLTALS 309

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 10/92 (10%), Positives = 26/92 (28%), Gaps = 8/92 (8%)

Query: 114 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 173
           +   +  +          +P ++   A   G    ++G     I +    +         
Sbjct: 44  QVTVSASEKGYYFHTE--NPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ------D 95

Query: 174 SGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
            G  EA+  +     E  + + A     + + 
Sbjct: 96  PGDAEAWQFLGITQAENENEQAAIVALQRCLE 127

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.5 bits (114), Expect = 8e-07
 Identities = 13/105 (12%), Positives = 30/105 (28%), Gaps = 12/105 (11%)

Query: 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 160
           ++      +  D E A            +             L +   +  +   +  + 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTG------VLLLLSSIHFQCRRLDRSAHFS 56

Query: 161 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           ++ ++            EAY  + + Y E G L+ A   Y   + 
Sbjct: 57  TLAIKQ------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR 95

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 1e-06
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 108 LRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166
              Q ++  A   F+ A+ L  N  D      A   LG  L+    +  A+  +   L +
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLD------AYINLGNVLKEARIFDRAVAAYLRALSL 232

Query: 167 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           S            +G +A  Y E G ++ A   Y + I 
Sbjct: 233 S------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 106 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164
           N L+    LE+A   +  A+E   N         A   LG     QG+   AI +    +
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAV------AWSNLGCVFNAQGEIWLAIHHFEKAV 196

Query: 165 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
            +           +AY  + +   E    +RA   Y + +S
Sbjct: 197 TLD------PNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 108 LRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166
           L+ +  + +A   +  AL L     D      +   L    + QG   EA++ +   L++
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHAD------SLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 167 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
                       A+  +A    + G L+ A   Y + I 
Sbjct: 335 F------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 91  DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 150
           +P   E  S L  G  +     L++A   ++ AL L  +  D          L A+L   
Sbjct: 63  NPLLAEAYSNL--GNVYKERGQLQEAIEHYRHALRLKPDFID------GYINLAAALVAA 114

Query: 151 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           G    A++ +   LQ +               + +    LG LE A   Y K I 
Sbjct: 115 GDMEGAVQAYVSALQYN------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 15/102 (14%), Positives = 36/102 (35%), Gaps = 12/102 (11%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
               +   D+E A   + +AL+   ++            LG  L+  G+  EA   +   
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYC------VRSDLGNLLKALGRLEEAKACYLKA 161

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           ++             A+  +   +   G++  A   ++K ++
Sbjct: 162 IET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.8 bits (107), Expect = 6e-06
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 108 LRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166
              Q  ++ A   ++ A+EL      P     A   L  +L+ +G   EA   ++  L++
Sbjct: 247 YYEQGLIDLAIDTYRRAIEL-----QP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300

Query: 167 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
                      ++   +A+   E G++E A R Y K + 
Sbjct: 301 C------PTHADSLNNLANIKREQGNIEEAVRLYRKALE 333

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.8 bits (107), Expect = 7e-06
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 14/115 (12%)

Query: 91  DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 150
           +P    +L  L       + + L+++      A++      +P    +A   LG   + +
Sbjct: 29  EPDNTGVLLLL--SSIHFQCRRLDRSAHFSTLAIKQ-----NP-LLAEAYSNLGNVYKER 80

Query: 151 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           G+ +EAI+++   L++           + Y  +A      GD+E A + Y   + 
Sbjct: 81  GQLQEAIEHYRHALRL------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.5 bits (106), Expect = 8e-06
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 106 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164
           N L+     ++A   +  AL L+ N             L      QG    AI  +   +
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHAV------VHGNLACVYYEQGLIDLAIDTYRRAI 264

Query: 165 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           ++           +AY  +A+   E G +  A   Y+  + 
Sbjct: 265 ELQ------PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G   L+  DL  A   F+AA++      +      A + LG +     +   AI      
Sbjct: 71  GLRRLQEGDLPNAVLLFEAAVQQDPKHME------AWQYLGTTQAENEQELLAISALRRC 124

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           L++         +  A  A+A  +T      +A      ++ 
Sbjct: 125 LELK------PDNQTALMALAVSFTNESLQRQACEILRDWLR 160

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 14/111 (12%), Positives = 32/111 (28%), Gaps = 9/111 (8%)

Query: 92  PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG 151
            + EE+  R      +L + D +     +    +  +   +P+ +       G    ++G
Sbjct: 22  AELEEMAKRDAEAHPWLSDYD-DLTSATYDKGYQFEEE--NPLRDHPQPFEEGLRRLQEG 78

Query: 152 KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
               A+      +Q            EA+  +     E      A     +
Sbjct: 79  DLPNAVLLFEAAVQQ------DPKHMEAWQYLGTTQAENEQELLAISALRR 123

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 10/109 (9%)

Query: 97  LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREA 156
           L    +   + L +    +    F AA+ L     DP        GLG      G+Y +A
Sbjct: 181 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP----DVQCGLGVLFNLSGEYDKA 236

Query: 157 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           +   +  L +             +  +          E A   Y + + 
Sbjct: 237 VDCFTAALSVR------PNDYLLWNKLGATLANGNQSEEAVAAYRRALE 279

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 12/99 (12%)

Query: 107 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 166
           F  + + +KA   F AAL +      P  +      LGA+L    +  EA+  +   L++
Sbjct: 227 FNLSGEYDKAVDCFTAALSV-----RP-NDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280

Query: 167 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
                   G   +   +      LG    A   + + ++
Sbjct: 281 Q------PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 18/103 (17%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G    + +D EKA   +  A+EL  +  +            A    + K+ E +++    
Sbjct: 15  GNAAYKQKDFEKAHVHYDKAIEL--DPSNIT----FYNNKAAVYFEEKKFAECVQFCEKA 68

Query: 164 LQI-SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           +++  E   +Y    +A     + + +  DL  A +++ + +S
Sbjct: 69  VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 8/94 (8%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
                  +      L  +           +  G        + EAIKY+   +++     
Sbjct: 2   SHMNGEPDIAQLKGL--SPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----- 54

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
                   Y  I+ CY   GDLE+   F  K + 
Sbjct: 55  -DPNEPVFYSNISACYISTGDLEKVIEFTTKALE 87

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 22/202 (10%), Positives = 50/202 (24%), Gaps = 15/202 (7%)

Query: 6   FKALAETCEADNSFFNMPLLLFVALIGATVGGLLARQRRGELQRVNEQLRQINAALRRQA 65
              L+   + D +     L   +      V      +  G   +V      + +      
Sbjct: 116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF----- 170

Query: 66  KIESYAPSLSYAPVGSRIPEDEVIVD-PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL 124
               +   L  + V +    D          + L         + N  L K+   + + L
Sbjct: 171 -FGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229

Query: 125 ELAQNVKDPIEEKKAA-RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 183
                     E    A    G     +    +A       + +            +Y  +
Sbjct: 230 SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-------PNSYIFL 282

Query: 184 ADCYTELGDLERAARFYDKYIS 205
           A    +  + +   +F+ K + 
Sbjct: 283 ALTLADKENSQEFFKFFQKAVD 304

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 12/95 (12%)

Query: 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170
           QD + A  +F+ A  L                L   L +QGK+ E+  + +         
Sbjct: 324 QDYKNAKEDFQKAQSLNPENVY------PYIQLACLLYKQGKFTESEAFFNETKLK---- 373

Query: 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
             +    E     A+  T+ GD + A + YD    
Sbjct: 374 --FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 16/115 (13%), Positives = 30/115 (26%), Gaps = 15/115 (13%)

Query: 91  DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 150
                  L     G       +L  A    + ++ L            +   L  +L  +
Sbjct: 239 RENAALALCYT--GIFHFLKNNLLDAQVLLQESINLHPTPN-------SYIFLALTLADK 289

Query: 151 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
              +E  K+    + ++            Y      Y  L D + A   + K  S
Sbjct: 290 ENSQEFFKFFQKAVDLN------PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G +F   ++  +A   ++ A+EL     DP  E      + A     G   + I++ +  
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIEL-----DP-NEPVFYSNISACYISTGDLEKVIEFTTKA 85

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           L+I          ++A    A     LG+   A      
Sbjct: 86  LEIK------PDHSKALLRRASANESLGNFTDAMFDLSV 118

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170
           ++ ++ F  F+ A++L     +P E        G        Y+ A +       ++   
Sbjct: 290 ENSQEFFKFFQKAVDL-----NP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--- 340

Query: 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206
                +   Y  +A    + G    +  F+++   +
Sbjct: 341 ---PENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 16/105 (15%)

Query: 111 QDLEKAFTEFKAALELAQN----------VKDPIEEKKAARGLGASLQRQGKYREAIKYH 160
            D + A  ++  A  L +           +               +   + K+  AIK  
Sbjct: 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451

Query: 161 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           +   ++  R      S +A   +A    ++  ++ A   ++    
Sbjct: 452 TKACELDPR------SEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 106 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 165
              +  D ++A    K   E +   +      +   G   ++  Q          +    
Sbjct: 153 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG---NISEQTLMERLKADATDNTS 209

Query: 166 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           ++E        +E    +   Y  LGDL+ A   +   ++
Sbjct: 210 LAEH------LSETNFYLGKYYLSLGDLDSATALFKLAVA 243

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
              +A   ++ A+      KD  E      GLG++ +  G+YR+A    +  ++      
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAE---CYLGLGSTFRTLGEYRKAEAVLANGVKQ----- 56

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210
            +          A     LG  E+      K I+    D
Sbjct: 57  -FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 44.8 bits (105), Expect = 6e-06
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK-KAARGLGASLQRQGKYREAIKYHSM 162
              +  N  L+K    F+  L+  + + D  E   K       +L    +Y E++   + 
Sbjct: 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221

Query: 163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY 200
            ++IS R    +   + Y    +C  +L   E      
Sbjct: 222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 15/119 (12%), Positives = 42/119 (35%)

Query: 91  DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 150
               E             + +  ++ + +    L+  +   +  +  +    + A + ++
Sbjct: 69  YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK 128

Query: 151 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209
             Y   I     +L       +   +     AIA+ Y E G L++    +++ + +LE+
Sbjct: 129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA 187

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 44.4 bits (106), Expect = 7e-06
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 200
           L    + Q KY+EA    +  L I E+  G+   +       +A  Y + G  + A    
Sbjct: 49  LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 108

Query: 201 DK 202
            +
Sbjct: 109 KR 110

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 200
           L    Q QGK  E   Y+   L+I     G    +  +    +A CY + G  + A   Y
Sbjct: 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192

Query: 201 DK 202
            +
Sbjct: 193 KE 194

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.4 bits (98), Expect = 8e-05
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 200
           L     ++GKY+EA       L+I E+  G++     +    +A      G  E    +Y
Sbjct: 91  LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYY 150

Query: 201 DK 202
            +
Sbjct: 151 RR 152

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 2/61 (3%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYD 201
                + + K R++  Y        +     S +      ++   Y   G LE A    D
Sbjct: 218 AEEREESKDKRRDSAPYGEYGSWY-KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLED 276

Query: 202 K 202
            
Sbjct: 277 C 277

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISERE--GEYSGST-EAYGAIADCYTELGDLERAARF 199
           L +   +QGKY++A   +  +L  +  +  G  +G     +    +          +A +
Sbjct: 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234

Query: 200 YDK 202
            + 
Sbjct: 235 GEY 237

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.8 bits (105), Expect = 9e-06
 Identities = 15/102 (14%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
                +   L++A   +K A+ ++           A   +G +L+     + A++ ++  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPT------FADAYSNMGNTLKEMQDVQGALQCYTRA 103

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           +QI+          +A+  +A  + + G++  A   Y   + 
Sbjct: 104 IQIN------PAFADAHSNLASIHKDSGNIPEAIASYRTALK 139

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 13/101 (12%)

Query: 106 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164
           N  R Q ++E+A   ++ ALE+            A   L + LQ+QGK +EA+ ++   +
Sbjct: 17  NIKREQGNIEEAVRLYRKALEVFPEFAA------AHSNLASVLQQQGKLQEALMHYKEAI 70

Query: 165 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           +IS          +AY  + +   E+ D++ A + Y + I 
Sbjct: 71  RIS------PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G      QD++ A   +  A+++     D      A   L +  +  G   EAI  +   
Sbjct: 84  GNTLKEMQDVQGALQCYTRAIQINPAFAD------AHSNLASIHKDSGNIPEAIASYRTA 137

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 207
           L++           +AY  +A C   + D         K +S +
Sbjct: 138 LKLKPDFP------DAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 200
           L      QG+Y  A+      L+  E+  G            +A  Y +    + AA   
Sbjct: 33  LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL 92

Query: 201 DK 202
           + 
Sbjct: 93  ND 94

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 200
           L    + Q KY++A    +  L I E+  G+   +       +A  Y + G  + A    
Sbjct: 75  LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 134

Query: 201 DK 202
            +
Sbjct: 135 KR 136

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 200
           L    Q QGKY E   Y+   L+I + + G    +  +    +A CY + G  ++A   Y
Sbjct: 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY 218

Query: 201 DK 202
            +
Sbjct: 219 KE 220

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST-EAYGAIADCYTELGDLERAARFY 200
           L     ++GKY+EA       L+I E+  G+      +    +A      G  E    +Y
Sbjct: 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 176

Query: 201 DK 202
            +
Sbjct: 177 QR 178

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISERE--GEYSGST-EAYGAIADCYTELGDLERAARF 199
           L +   +QGK+++A   +  +L  +     G         +    +     G  +    F
Sbjct: 201 LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260

Query: 200 YDK 202
            + 
Sbjct: 261 GEY 263

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 2/61 (3%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGST-EAYGAIADCYTELGDLERAARFYD 201
                + +GK ++   +        +     S +       +   Y   G  E A    +
Sbjct: 244 AEEREECKGKQKDGTSFGEYGGWY-KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302

Query: 202 K 202
            
Sbjct: 303 A 303

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 12/96 (12%)

Query: 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170
           Q+ ++A  +F  A EL     DP E       L     R+ K+ +     S   +     
Sbjct: 318 QNYDQAGKDFDKAKEL-----DP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE- 370

Query: 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206
                + E     A+  T+  D ++A + YD  I  
Sbjct: 371 -----APEVPNFFAEILTDKNDFDKALKQYDLAIEL 401

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 15/142 (10%)

Query: 64  QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA 123
               ES+  +            ++  +  K    L     G       D   A  + K A
Sbjct: 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT--GIFKFLKNDPLGAHEDIKKA 263

Query: 124 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 183
           +EL   V        +   +   +  +    E   Y    L++       S     Y   
Sbjct: 264 IELFPRVN-------SYIYMALIMADRNDSTEYYNYFDKALKLDS---NNS---SVYYHR 310

Query: 184 ADCYTELGDLERAARFYDKYIS 205
                 L + ++A + +DK   
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKE 332

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 13/99 (13%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G  F RN+  + A   +  ALEL ++             L A     G  ++ ++  +  
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALELKED-------PVFYSNLSACYVSVGDLKKVVEMSTKA 65

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           L++          ++     A     LG    A      
Sbjct: 66  LELK------PDYSKVLLRRASANEGLGKFADAMFDLSV 98

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 12/94 (12%), Positives = 21/94 (22%), Gaps = 12/94 (12%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           D  +   + +AA+              A   L  +    G            L +     
Sbjct: 4   DGPRELLQLRAAVRHRPQDFV------AWLMLADAELGMGDTTAGEMAVQRGLAL----- 52

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
            + G  EA   +            AA    +   
Sbjct: 53  -HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 14/119 (11%)

Query: 91  DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 150
            P   E ++RL  G+     Q   +A    + A + A            A  LG +L+  
Sbjct: 53  HPGHPEAVARL--GRVRWTQQRHAEAAVLLQQASDAAPEHPG------IALWLGHALEDA 104

Query: 151 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 209
           G+   A   ++   Q+                + +    L D         +  + +  
Sbjct: 105 GQAEAAAAAYTRAHQLLP------EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170
            +  ++   F+ A++L     DP EE K     G +L    +Y EA+  ++ V+ + E  
Sbjct: 20  GNYTESIDLFEKAIQL-----DP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIED- 72

Query: 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
                + + + A AD    +   E  A   +    
Sbjct: 73  ---EYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.3 bits (98), Expect = 8e-05
 Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 12/102 (11%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
                   D EKA   F  A+E  +                  L    +   A+ ++   
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAI------PYINFANLLSSVNELERALAFYDKA 83

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           L++       S +  AY    + Y      + A   ++K + 
Sbjct: 84  LELD------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.3 bits (98), Expect = 8e-05
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 13/101 (12%)

Query: 106 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164
             L      + A    + A+EL     +   + +A    G  L  +G   EA+   + V 
Sbjct: 133 TVLVKLEQPKLALPYLQRAVEL-----NE-NDTEARFQFGMCLANEGMLDEALSQFAAVT 186

Query: 165 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           +         G  +A+      Y    + E+A    DK I 
Sbjct: 187 EQD------PGHADAFYNAGVTYAYKENREKALEMLDKAID 221

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 13/101 (12%)

Query: 106 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164
           N    +   ++A   F+ AL          E       LG  L +  + + A+ Y    +
Sbjct: 99  NVYVVKEMYKEAKDMFEKALRA-----GM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152

Query: 165 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           +++         TEA      C    G L+ A   +     
Sbjct: 153 ELN------ENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 13/101 (12%)

Query: 106 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164
           N L +  +LE+A   +  ALEL     D      A  G G     +  Y+EA       L
Sbjct: 65  NLLSSVNELERALAFYDKALEL-----DS-SAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118

Query: 165 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           +          + + +  +     +L   + A  +  + + 
Sbjct: 119 RAG------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 8/93 (8%)

Query: 113 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172
           +  +      +  L    +                   G Y +A +  +  ++       
Sbjct: 1   MGSSHHHHHHSSGL--VPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE------ 52

Query: 173 YSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
                  Y   A+  + + +LERA  FYDK + 
Sbjct: 53  NKEDAIPYINFANLLSSVNELERALAFYDKALE 85

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 25/107 (23%)

Query: 106 NFLRNQ-DLEKAFTEFKAALEL------AQNVKDPIEEKKAARGLGASLQRQGKYREAIK 158
           N    Q D ++A   ++ ALEL      A               LG +  +QG Y EAI+
Sbjct: 9   NAYYKQGDYDEAIEYYQKALELDPRSAEAWY------------NLGNAYYKQGDYDEAIE 56

Query: 159 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           Y+   L++         S EA+  + + Y + GD + A  +Y K + 
Sbjct: 57  YYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 13/101 (12%)

Query: 106 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164
           N    Q D ++A   ++ ALEL     +      A   LG +  +QG Y EAI+Y+   L
Sbjct: 43  NAYYKQGDYDEAIEYYQKALELDPRSAE------AWYNLGNAYYKQGDYDEAIEYYQKAL 96

Query: 165 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           ++         S EA+  + + Y + GD + A  +Y K + 
Sbjct: 97  ELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.1 bits (90), Expect = 4e-04
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           LG +  +QG Y EAI+Y+   L++         S EA+  + + Y + GD + A  +Y K
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 203 YIS 205
            + 
Sbjct: 61  ALE 63

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 9/117 (7%)

Query: 90  VDPKKEELLSRLKTGKNFLRNQD-LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQ 148
             PK  E  S L      L N    + A    + A+ L  N  +   +   A  L    +
Sbjct: 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMRE 224

Query: 149 RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
              +  E  K     L+ +       G T+   + A  Y    + ++A     K + 
Sbjct: 225 EGEEEGEGEKLVEEALEKA------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 38.8 bits (90), Expect = 7e-04
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 21/128 (16%)

Query: 91  DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-------------VKDPIEEK 137
            P   ++L      K + R  + +KA    K ALE   N              K      
Sbjct: 243 APGVTDVLRSA--AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN 300

Query: 138 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 197
               G+    +       A+ +     +                 +A  +      E A 
Sbjct: 301 LRENGMYGKRKLLELIGHAVAHLKKADEA------NDNLFRVCSILASLHALADQYEEAE 354

Query: 198 RFYDKYIS 205
            ++ K  S
Sbjct: 355 YYFQKEFS 362

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 38.8 bits (90), Expect = 8e-04
 Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 24/134 (17%)

Query: 91  DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 150
           +     + S L            E+A   F+           P+ ++      G     Q
Sbjct: 330 NDNLFRVCSIL--ASLHALADQYEEAEYYFQKEFSKE---LTPVAKQLLHLRYGNFQLYQ 384

Query: 151 GK-YREAIKYHSMVLQISEREGEYSGS------------------TEAYGAIADCYTELG 191
            K   +AI +    ++I+++  E                      +EA   +A       
Sbjct: 385 MKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444

Query: 192 DLERAARFYDKYIS 205
            +++A    ++ + 
Sbjct: 445 KMQQADEDSERGLE 458

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
            +  L++ +  +A   F+  +E      DP +       LG   +R  +  +AI  ++  
Sbjct: 14  AQEHLKHDNASRALALFEELVET-----DP-DYVGTYYHLGKLYERLDRTDDAIDTYAQG 67

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFY 200
           ++++  EG      +    + D   +   LE     +
Sbjct: 68  IEVAREEGT----QKDLSELQDAKLKAEGLEHHHHHH 100

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 6/64 (9%)

Query: 142 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD 201
            L     +      A+     +++      +Y      Y  +   Y  L   + A   Y 
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDP---DYV---GTYYHLGKLYERLDRTDDAIDTYA 65

Query: 202 KYIS 205
           + I 
Sbjct: 66  QGIE 69

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
               L  QG    A++     LQ      E  G  EAY  + + Y +LGD ++A   Y  
Sbjct: 6   TIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60

Query: 203 YIS 205
            I 
Sbjct: 61  AIE 63

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 36.6 bits (85), Expect = 8e-04
 Identities = 13/69 (18%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 98  LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI 157
           + +LKT K  +   D+E A    +  L+      +P+ + +A   +G + ++ G +++A+
Sbjct: 1   MDQLKTIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKAL 55

Query: 158 KYHSMVLQI 166
             +   +++
Sbjct: 56  NNYQSAIEL 64

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 105 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-REAIKYHSMV 163
           K     +++EK   + +  L  AQ       E +A    G +L     Y  EA    S  
Sbjct: 76  KQQDVQEEMEKTLQQMEEVLGSAQV------EAQALMLKGKALNVTPDYSPEAEVLLSKA 129

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           +++           EA+  + + Y + GD+  A   +   ++
Sbjct: 130 VKL------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT 165

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 10/92 (10%), Positives = 24/92 (26%), Gaps = 9/92 (9%)

Query: 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170
           +  ++A + +  A ++ +      +            + +  Y EA++  S    +    
Sbjct: 235 KISQQALSAYAQAEKVDRKASSNPD---LHLNRATLHKYEESYGEALEGFSQAAALD--- 288

Query: 171 GEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
                  E           L  L        K
Sbjct: 289 ---PAWPEPQQREQQLLEFLSRLTSLLESKGK 317

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 11/102 (10%), Positives = 26/102 (25%), Gaps = 12/102 (11%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G +  +     +A    +   +      D       A  LG +  + G      +     
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFDVD------VALHLGIAYVKTGAVDRGTELLERS 68

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           L  +        + +    +   Y ++   + A     K   
Sbjct: 69  LADA------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 13/101 (12%)

Query: 106 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164
                    + A        E      +P         LG +L   G++ EAI    + L
Sbjct: 84  LTYVQVQKYDLAVPLLIKVAEA-----NP-INFNVRFRLGVALDNLGRFDEAIDSFKIAL 137

Query: 165 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
            +           + + AIA  Y ++G  E A   + K   
Sbjct: 138 GLR------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 13/101 (12%)

Query: 106 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164
                   +++     + +L  A +          A  LG +  +  KY  A+     V 
Sbjct: 50  IAYVKTGAVDRGTELLERSLADAPDNVK------VATVLGLTYVQVQKYDLAVPLLIKVA 103

Query: 165 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           + +        +      +      LG  + A   +   + 
Sbjct: 104 EAN------PINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.0 bits (92), Expect = 3e-04
 Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
            G S  + G+Y +A+     V          +   +    +   Y + G ++R     ++
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDAD------AFDVDVALHLGIAYVKTGAVDRGTELLER 67

Query: 203 YIS 205
            ++
Sbjct: 68  SLA 70

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 38.1 bits (90), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           LG +  +QG Y EAI+Y+   L++         + EA+  + + Y + GD + A  +Y K
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 203 YIS 205
            + 
Sbjct: 69  ALE 71

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 25/107 (23%)

Query: 106 NFLRNQ-DLEKAFTEFKAALEL------AQNVKDPIEEKKAARGLGASLQRQGKYREAIK 158
           N    Q D ++A   ++ ALEL      A               LG +  +QG Y EAI+
Sbjct: 17  NAYYKQGDYDEAIEYYQKALELDPNNAEAWY------------NLGNAYYKQGDYDEAIE 64

Query: 159 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           Y+   L++         + EA+  + + Y + GD + A  +Y K + 
Sbjct: 65  YYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.1 bits (90), Expect = 4e-04
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           LG +  +QG Y EAI+Y+   L++         + EA+  + + Y + GD + A  +Y K
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

Query: 203 YIS 205
            + 
Sbjct: 69  ALE 71

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 113 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 172
           ++      +A L    +  + +        LG +     ++  A+ +    L        
Sbjct: 1   MQAITERLEAMLAQGTD--NML----LRFTLGKTYAEHEQFDAALPHLRAALDFDP---T 51

Query: 173 YSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           YS    A+  +       GD   A + ++  ++
Sbjct: 52  YS---VAWKWLGKTLQGQGDRAGARQAWESGLA 81

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 119 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 178
           ++K AL+    V+DP    +    +G          EA K  +  +   +          
Sbjct: 21  DWKGALDAFSAVQDP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAV 72

Query: 179 AYGAIADCYTELGDLERAARFYDKYISRLESD 210
           AY      Y +    + A +   + + +L  +
Sbjct: 73  AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 16/112 (14%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
           G  +   +++ +A   F  ++   +++        A    G    +  KY  AIK     
Sbjct: 44  GCMYTILKNMTEAEKAFTRSINRDKHLAV------AYFQRGMLYYQTEKYDLAIKDLKEA 97

Query: 164 LQISER----------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           L                     + E    IA  Y +  + ++A        S
Sbjct: 98  LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 13/94 (13%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
            LE+A +  K A  +                 G      G+  +A       L + +   
Sbjct: 99  YLEQALSVLKDAERVNPRYAP------LHLQRGLVYALLGERDKAEASLKQALALED--- 149

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
               + E   A+A+ Y  +G L+ A   Y K + 
Sbjct: 150 ----TPEIRSALAELYLSMGRLDEALAQYAKALE 179

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 14/98 (14%)

Query: 106 NFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 164
                  + +KA    K AL L    +           L       G+  EA+  ++  L
Sbjct: 126 LVYALLGERDKAEASLKQALALEDTPE-------IRSALAELYLSMGRLDEALAQYAKAL 178

Query: 165 QISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           + +          +     A      G  E AAR    
Sbjct: 179 EQA------PKDLDLRVRYASALLLKGKAEEAARAAAL 210

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 2/100 (2%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
           +L ++    +   ++A+          +       L  QG  + A +      Q+   + 
Sbjct: 68  ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 127

Query: 172 EYSGSTEAYGAI--ADCYTELGDLERAARFYDKYISRLES 209
                   +     A        L+ A       I  L S
Sbjct: 128 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 11/106 (10%)

Query: 97  LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREA 156
           L+  ++  ++ L  + L    TE    + L +     I      +    S   +GK  E+
Sbjct: 241 LVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI----IYQIKAVSALVKGKTDES 296

Query: 157 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
            +  +  + +         S   Y  +   Y   G    AA  Y  
Sbjct: 297 YQAINTGIDLEM-------SWLNYVLLGKVYEMKGMNREAADAYLT 335

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 144 GASLQRQGKYREAIKYHSMVLQI-SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
            A    +G Y +  +     +++  E   +Y    +AY  I + Y +    + A  FY+K
Sbjct: 45  AAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK 104

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 38.6 bits (90), Expect = 9e-04
 Identities = 10/94 (10%), Positives = 22/94 (23%), Gaps = 12/94 (12%)

Query: 112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 171
            +++       A  L      P E+  A    G   Q     +  +        ++    
Sbjct: 359 TVQRLLPVLCQAHGL-----TP-EQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---- 408

Query: 172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
                  A  +       L  ++R      +   
Sbjct: 409 --PEQVVAIASHDGGKQALETVQRLLPVLCQAHG 440

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.75
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.73
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.72
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.72
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.7
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.7
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.7
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.7
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.69
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.69
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.68
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.68
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.67
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.67
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.65
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.64
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.63
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.63
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.63
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.63
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.62
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.61
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.61
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.6
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.6
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.57
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.56
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.56
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.55
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.55
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.54
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.54
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.53
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.53
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.53
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.53
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.52
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.52
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.52
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.52
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.5
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.5
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.5
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.49
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.49
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.49
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.49
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.49
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.48
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.48
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.48
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.47
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.47
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.46
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.46
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.46
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.46
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.45
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.45
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.45
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.44
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.44
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.44
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.43
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.42
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.4
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.4
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.4
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.39
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.39
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.38
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.37
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.37
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.37
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.36
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.36
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.35
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.35
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.34
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.34
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.34
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.34
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.32
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.31
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.31
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.3
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.3
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.3
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.3
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.3
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.29
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.29
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.29
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.29
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.29
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.29
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.28
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.28
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.28
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.27
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.27
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.27
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.26
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.25
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.25
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.25
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.24
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.24
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.24
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.22
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.21
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.21
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.21
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.21
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.2
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.2
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.19
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.18
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.18
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.18
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.17
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.17
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.16
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.13
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.13
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.12
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.09
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.09
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.08
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.07
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.07
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.05
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.05
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.01
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.0
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.99
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.99
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.98
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.98
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.98
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.97
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.97
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.97
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.96
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.96
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.96
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.96
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.95
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.94
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.91
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.9
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.89
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.89
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.89
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.88
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.86
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.86
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.85
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.85
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.85
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.8
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.78
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.78
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.78
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.77
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.75
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.74
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.68
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.65
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.64
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.62
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.47
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.38
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.36
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.36
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.35
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.35
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.28
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.28
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.27
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.26
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.23
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.13
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.1
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.07
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.06
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.05
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.02
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.96
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.93
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.93
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.9
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.86
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.72
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.7
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.63
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.56
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.47
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.41
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.39
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	97.34
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.24
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.0
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.93
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.91
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.84
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.83
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.26
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.11
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.02
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.79
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.73
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.72
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.7
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.43
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.36
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.97
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.76
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.74
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.55
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.71
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.08
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	92.97
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.48
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.21
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	92.2
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	91.8
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	91.35
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	91.15
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	91.04
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	91.0
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	90.95
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.33
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.34
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	88.99
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	88.18
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	87.83
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	87.57
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	87.0
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	86.77
3re2_A	472	Predicted protein; menin, multiple endocrine neopl	85.59
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	84.96
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	84.88
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.43
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	82.91
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	82.75
4gq4_A	489	Menin; tumor suppressor, nucleus, transcription-tr	82.6
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	82.54
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	82.46
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	81.64
4gq4_A	489	Menin; tumor suppressor, nucleus, transcription-tr	81.61
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	81.4
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	81.21
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	81.05
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	80.53
3u84_A	550	Menin; MLL, JUND, ledgf, TPR, transglutaminase-lik	80.3

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.75  E-value=3.3e-17  Score=110.97  Aligned_cols=104  Identities=15%  Similarity=0.267  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      ..+..+.++|..|+..|+|++|+..|++++++.+.      .+.++.++|.++..+|++++|+..|++++++.      +
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p   78 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE------NAILYSNRAACLTKLMEFQRALDDCDTCIRLD------S   78 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh------h
Confidence            35667899999999999999999999999997654      57899999999999999999999999999985      6


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ....+++++|.+|..+|++++|+.+|++++++.+++
T Consensus        79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence            678899999999999999999999999999987654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.75  E-value=6.8e-17  Score=109.54  Aligned_cols=109  Identities=16%  Similarity=0.339  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-C
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-E  172 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-~  172 (210)
                      ...+.++.++|..++.+|+|++|+.+|++++++.+.      .+.++.++|.+|..+|++++|+.+|++++++.+... .
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~   78 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD   78 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence            345667899999999999999999999999998654      577899999999999999999999999999986543 3


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ....+.++.++|.+|..+|++++|+++|+++++..+
T Consensus        79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            344678999999999999999999999999998654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.73  E-value=3.2e-16  Score=120.67  Aligned_cols=117  Identities=15%  Similarity=0.167  Sum_probs=107.3

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      +....+.++.++|.+|..+|++++|+.+|++++++.+.. ++......+++++|.+|..+|+|++|+.++++++++.++.
T Consensus       150 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~  229 (293)
T 3u3w_A          150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence            334566688999999999999999999999999999988 6778888899999999999999999999999999999988


Q ss_pred             CCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhc
Q 028333          171 GEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLE  208 (210)
Q Consensus       171 ~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~  208 (210)
                      ++....+.+++++|.+|..+| ++++|+.+|++|+.+++
T Consensus       230 ~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            888888999999999999999 57999999999998764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.72  E-value=1.3e-15  Score=105.70  Aligned_cols=120  Identities=25%  Similarity=0.363  Sum_probs=110.4

Q ss_pred             ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333           90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus        90 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      .++....+.++..+|.++...|++++|+.++++++.+.+..+++.....++.++|.++...|++++|+.++++++++.++
T Consensus        42 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  121 (164)
T 3ro3_A           42 FGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  121 (164)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            34455567788999999999999999999999999999999999988999999999999999999999999999999988


Q ss_pred             hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          170 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       170 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .++.+....++..+|.+|...|++++|..++++++++.+.
T Consensus       122 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          122 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             ccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            8877778899999999999999999999999999988753

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.72  E-value=1.4e-16  Score=111.22  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  173 (210)
                      +....+++.+|.+++.+|++++|+..|++++.+.+.      .+.+++++|.++..+|++++|+.+|++++++.      
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~------  100 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG------  100 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC------
Confidence            346667999999999999999999999999997655      67799999999999999999999999999986      


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      |..+.+++++|.+|..+|++++|+.+|++++++.++
T Consensus       101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            667789999999999999999999999999988653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.70  E-value=7.5e-16  Score=118.67  Aligned_cols=136  Identities=15%  Similarity=0.127  Sum_probs=119.2

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      ...+++.|.+++.....          .++....+.++.++|.+|..+|++++|+.+|++++.+.+..++....+.++.+
T Consensus        53 ~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~  122 (292)
T 1qqe_A           53 LNLAGDSFLKAADYQKK----------AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (292)
T ss_dssp             THHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45666667777766554          55666677889999999999999999999999999999999999888999999


Q ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          143 LGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       143 lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +|.+|... |++++|+.+|++++++.+..++......++.++|.+|..+|++++|+.+|++++++.+
T Consensus       123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  189 (292)
T 1qqe_A          123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM  189 (292)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            99999996 9999999999999999876655555678899999999999999999999999998764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.70  E-value=9.7e-16  Score=121.99  Aligned_cols=135  Identities=13%  Similarity=0.123  Sum_probs=107.5

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKAAR  141 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~-~~~~~~~~~  141 (210)
                      ...++..+.+++.....          .++....+.++..+|.+|..+|++++|+.++.++++++++.++ ....+.++.
T Consensus       119 ~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          119 YLSAIKFFKKAESKLIF----------VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHHHHHHTTGGG----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh----------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            34455555555555443          4556667778888888888888888888888888888888776 677778888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          142 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ++|.+|...|++++|+.+|++++++.++.++.+..+.++.++|.+|..+|++++|+.+|++++++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  254 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF  254 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888777777777888888888888888888888888888754

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.70  E-value=1.1e-15  Score=117.73  Aligned_cols=117  Identities=18%  Similarity=0.169  Sum_probs=103.8

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEE-KKAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      +....+.+++++|.+|..+|++++|+.+|++++++.+...+.... ..+++++|.+|..+|+|++|+.++++++++....
T Consensus       150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~  229 (293)
T 2qfc_A          150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            333456789999999999999999999999999998887655443 3899999999999999999999999999999877


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhhc
Q 028333          171 GEYSGSTEAYGAIADCYTELGDLERA-ARFYDKYISRLE  208 (210)
Q Consensus       171 ~~~~~~~~~~~~lg~~y~~~g~~~~A-~~~~~~al~~~~  208 (210)
                      ++....+.+++++|.+|..+|++++| ..+|++|+.+.+
T Consensus       230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            77777899999999999999999999 888999998764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.70  E-value=8.9e-16  Score=106.96  Aligned_cols=115  Identities=16%  Similarity=0.164  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV------KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      ++..+.+.|..++..|+|++|+..|++++.+.+..      ...+..+.++.++|.++..+|+|++|+.+|++++++..+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            56678999999999999999999999999998873      112234569999999999999999999999999998432


Q ss_pred             -hCCCcchHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          170 -EGEYSGSTEAY----GAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       170 -~~~~~~~~~~~----~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                       ..-.|....+|    +++|.++..+|++++|+.+|++++++.++|
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence             22236778888    999999999999999999999999998764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.69  E-value=3.1e-15  Score=119.11  Aligned_cols=136  Identities=18%  Similarity=0.247  Sum_probs=120.9

Q ss_pred             HHHHHhcccccccccccccCCCCccccccc-hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDP-KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  141 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  141 (210)
                      ...++..+.+++.....          .++ ....+.++.++|.+|..+|++++|+.+|++++++.++.+++...+.++.
T Consensus       159 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  228 (383)
T 3ulq_A          159 TYFSMDYARQAYEIYKE----------HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY  228 (383)
T ss_dssp             HHHHHHHHHHHHHHHHT----------CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh----------CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            45566666666666654          333 5667788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          142 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ++|.+|..+|++++|+.++++++++.+..++.+..+.++.++|.+|..+|++++|..++++++++.+
T Consensus       229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988877677899999999999999999999999999998754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.69  E-value=1.6e-15  Score=120.67  Aligned_cols=134  Identities=16%  Similarity=0.132  Sum_probs=107.0

Q ss_pred             HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHH
Q 028333           64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKAARG  142 (210)
Q Consensus        64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~-~~~~~~~~~~  142 (210)
                      ..++..+.+++.....          .++....+.++.++|.+|...|++++|+.++.+++++.++.++ ....+.++.+
T Consensus       118 ~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  187 (378)
T 3q15_A          118 VEAIGYYREAEKELPF----------VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV  187 (378)
T ss_dssp             HHHHHHHHHHHTTGGG----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence            4444555555555443          4556667778888899999999999999999999988888765 5567888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +|.+|...|++++|+++|++++++.++.++....+.++.++|.+|..+|++++|+.+|++++++.
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~  252 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS  252 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            89999889999999999999988888777777778888888988888888888988888888754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.68  E-value=3.8e-15  Score=103.24  Aligned_cols=118  Identities=17%  Similarity=0.206  Sum_probs=109.4

Q ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333           91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      ++....+.++..+|.++...|++++|+.++.+++.+.+..++......++.++|.++...|++++|+.++++++++.+..
T Consensus         3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A            3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            55666788899999999999999999999999999999999998889999999999999999999999999999999888


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ++.+....++.++|.++...|++++|+.+++++++..+
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            77777888999999999999999999999999998754

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.68  E-value=3.3e-15  Score=108.08  Aligned_cols=135  Identities=13%  Similarity=0.080  Sum_probs=117.2

Q ss_pred             HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHH
Q 028333           64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-DPIEEKKAARG  142 (210)
Q Consensus        64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~-~~~~~~~~~~~  142 (210)
                      ..++..+.+++.....          .++....+.++.++|.++...|++++|+.++.+++.+++..+ ++.....++.+
T Consensus        43 ~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  112 (203)
T 3gw4_A           43 DEARASFQALQQQAQK----------SGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYE  112 (203)
T ss_dssp             HHHHHHHHHHHHHHHT----------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----------cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence            3344445555555544          556667788899999999999999999999999999999988 45578889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +|.++...|++++|+.++++++++.+..++....+.++.++|.++...|++++|..++++++++.+
T Consensus       113 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          113 VATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988877777788899999999999999999999999998764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.67  E-value=8.9e-15  Score=116.36  Aligned_cols=135  Identities=14%  Similarity=0.137  Sum_probs=117.3

Q ss_pred             HHHHHhcccccccccccccCCCCccccccc-hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDP-KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  141 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  141 (210)
                      ...++..+.+++.....          .++ ....+.++.++|.+|..+|++++|+.+|++++++++..+++...+.++.
T Consensus       157 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  226 (378)
T 3q15_A          157 THVSMYHILQALDIYQN----------HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL  226 (378)
T ss_dssp             HHHHHHHHHHHHHHHHT----------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHh----------CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35555566666665543          232 4456778899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          142 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ++|.+|..+|++++|+.++++++++.+..++... ..++.++|.+|..+|++++|..++++++++.+
T Consensus       227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887766544 89999999999999999999999999998764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.67  E-value=1.2e-15  Score=118.38  Aligned_cols=113  Identities=16%  Similarity=0.080  Sum_probs=66.9

Q ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333           91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      ++....+.++.++|.+|.. |++++|+.+|++++.+.+..++......++.++|.+|..+|+|++|+.+|++++++..+.
T Consensus       110 g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          110 GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            3344445555666666655 666666666666666666655555555566666666666666666666666666665555


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333          171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYI  204 (210)
Q Consensus       171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  204 (210)
                      +..+....++.++|.++..+|++++|+.+|++++
T Consensus       189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            4433444556666666666666666666666665

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.65  E-value=7.1e-16  Score=107.43  Aligned_cols=103  Identities=11%  Similarity=0.136  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      .....+.+|.+|+..|+|++|+.+|++++++.+.      .+.++.++|.+|...|++++|+.+|++++++.      |.
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~   97 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------DPKAHRFLGLLYELEENTDKAVECYRRSVELN------PT   97 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC------CC
Confidence            4556789999999999999999999999998655      67899999999999999999999999999986      77


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhhccC
Q 028333          176 STEAYGAIADCYTELGDLERAARF-YDKYISRLESD  210 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~-~~~al~~~~~~  210 (210)
                      ...+++++|.+|...|++++|... +++++++.+++
T Consensus        98 ~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~  133 (150)
T 4ga2_A           98 QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS  133 (150)
T ss_dssp             CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence            789999999999999999887765 59999987653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.64  E-value=4.4e-15  Score=104.36  Aligned_cols=109  Identities=14%  Similarity=0.112  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD------------PIEEKKAARGLGASLQRQGKYREAIKYHSM  162 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~  162 (210)
                      ..+..+...|..++..|+|++|+..|.+++.+.+....            .+....++.++|.+|..+|++++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            45667899999999999999999999999998654311            334667999999999999999999999999


Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       163 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ++++.      +....+++++|.+|..+|++++|+.+|++++++.++
T Consensus        89 al~~~------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           89 VLKRE------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHhcC------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            99985      677899999999999999999999999999998765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.63  E-value=1.5e-14  Score=111.26  Aligned_cols=136  Identities=13%  Similarity=0.015  Sum_probs=109.0

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      ++.+++.+.+.+...+.          ...........+.+|.++...|++++|+.++++++.+.....+......++++
T Consensus        91 y~~A~~~~~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 2qfc_A           91 YKEIYNKVWNELKKEEY----------HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccC----------ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            44555555555544332          22223344456779999999999999999999999988776777777889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +|.+|...|++++|+.+|++++++.+...+.+. ...+++++|.+|..+|++++|+.++++++++.+
T Consensus       161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998877655443 337999999999999999999999999998753

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.63  E-value=8.5e-15  Score=112.66  Aligned_cols=110  Identities=14%  Similarity=0.036  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCCcchH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYSGST  177 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~  177 (210)
                      .+..+|.++...+++++|+.+|++++.+.....+......+++++|.+|...|++++|+.+|+++++..++. .+.+..+
T Consensus       117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  196 (293)
T 3u3w_A          117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV  196 (293)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence            445689999999999999999999999777767777778899999999999999999999999999988876 5556677


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .+++++|.+|..+|++++|+.++++++++.+
T Consensus       197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~  227 (293)
T 3u3w_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999998764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.63  E-value=6.4e-15  Score=103.72  Aligned_cols=106  Identities=15%  Similarity=0.176  Sum_probs=96.0

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  171 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  171 (210)
                      .....+..++.+|.+++..|+|++|+.+|++++.+.+.      ...++.++|.+|...|++++|+.+|++++++.    
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----   75 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA------NPIYLSNRAAAYSASGQHEKAAEDAELATVVD----   75 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----
Confidence            34456778999999999999999999999999997655      57789999999999999999999999999985    


Q ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       172 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                        +....+++++|.+|..+|++++|+.+|++++++.++
T Consensus        76 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  111 (164)
T 3sz7_A           76 --PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN  111 (164)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred             --CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence              666899999999999999999999999999998764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.63  E-value=8.5e-15  Score=98.45  Aligned_cols=100  Identities=15%  Similarity=0.171  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      .+..+..+|..++..|+|++|+..|++++.+.+.      ...++.++|.++...|++++|+.+|++++++.      +.
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~   70 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKD------PN   70 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CC
Confidence            4557889999999999999999999999997654      56889999999999999999999999999885      66


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ...+++++|.+|..+|++++|+.+|++++++.
T Consensus        71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           71 FVRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            68899999999999999999999999999887

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.62  E-value=1.1e-14  Score=101.17  Aligned_cols=105  Identities=21%  Similarity=0.154  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  172 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  172 (210)
                      ++.....++.+|..++..|++++|+..|++++.+.+.      ...+++++|.++...|++++|+.+|++++.+.     
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----   85 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-----   85 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----
Confidence            3445667899999999999999999999999997554      57788999999999999999999999999885     


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                       |....+++++|.+|..+|++++|+.+|++++++.+.
T Consensus        86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A           86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence             666789999999999999999999999999987653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.61  E-value=1.6e-14  Score=111.92  Aligned_cols=135  Identities=13%  Similarity=0.046  Sum_probs=123.9

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      ...+++.|.+++.....          .++....+.++.++|.+|..+|++++|+.+|++++.+.+..+++...+.++.+
T Consensus        52 ~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~  121 (307)
T 2ifu_A           52 LEQAKDAYLQEAEAHAN----------NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR  121 (307)
T ss_dssp             HHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45566667777777666          66777788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +|.+|.. |++++|+.+|++++++.+..++......++.++|.+|..+|++++|+.+|++++++.+
T Consensus       122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  186 (307)
T 2ifu_A          122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK  186 (307)
T ss_dssp             HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            9999998 9999999999999999999999999999999999999999999999999999998764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.61  E-value=1.9e-14  Score=99.07  Aligned_cols=104  Identities=22%  Similarity=0.210  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  173 (210)
                      +.....++.+|..++..|++++|+..|++++.+.+.      ...++.++|.++...|++++|+.+|++++.+.      
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------   82 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY------DARYFLGLGACRQSLGLYEQALQSYSYGALMD------   82 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence            345667899999999999999999999999997554      57789999999999999999999999999885      


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      |....+++++|.+|..+|++++|+.+|++++++.+.
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  118 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA  118 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            666788999999999999999999999999988653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.60  E-value=5.1e-14  Score=101.74  Aligned_cols=113  Identities=19%  Similarity=0.188  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc-
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-  174 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-  174 (210)
                      .+.++..+|.++...|++++|+.++++++.+++..++......++.++|.++...|++++|+.++++++++.+..++.+ 
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            5667899999999999999999999999999999999999999999999999999999999999999999998777444 


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ....++.++|.++...|++++|..++++++++.+
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999998653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.60  E-value=4.3e-14  Score=108.82  Aligned_cols=111  Identities=12%  Similarity=0.084  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      ..+...|.+|...|+|++|+.+|.+++.+.++.+++...+.++.++|.+|..+|++++|+.+|++++++....++....+
T Consensus        38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a  117 (292)
T 1qqe_A           38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (292)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            34566788999999999999999999999999999988899999999999999999999999999999998888777778


Q ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhc
Q 028333          178 EAYGAIADCYTEL-GDLERAARFYDKYISRLE  208 (210)
Q Consensus       178 ~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~  208 (210)
                      .++.++|.+|... |++++|+.+|++|+++.+
T Consensus       118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~  149 (292)
T 1qqe_A          118 NFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (292)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            8999999999996 999999999999999875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.57  E-value=3.2e-13  Score=107.18  Aligned_cols=136  Identities=24%  Similarity=0.306  Sum_probs=118.6

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      ...++..+.+++...+.          .++....+.++..+|.++...|++++|+.++++++.+.+..++......++.+
T Consensus       203 ~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  272 (406)
T 3sf4_A          203 FRDAVIAHEQRLLIAKE----------FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS  272 (406)
T ss_dssp             HHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh----------cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHH
Confidence            34455555555555443          45555667789999999999999999999999999999999998888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +|.++...|++++|+.++++++++....++.+....++..+|.+|...|++++|+.++++++++.+
T Consensus       273 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  338 (406)
T 3sf4_A          273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  338 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988887777889999999999999999999999999998754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.56  E-value=3.8e-13  Score=103.57  Aligned_cols=135  Identities=24%  Similarity=0.312  Sum_probs=116.5

Q ss_pred             HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 028333           64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL  143 (210)
Q Consensus        64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~l  143 (210)
                      ..++..+.+++...+.          .++......++..+|.++...|++++|+.++++++.+.+..+++.....++..+
T Consensus       200 ~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  269 (338)
T 3ro2_A          200 RDAVIAHEQRLLIAKE----------FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL  269 (338)
T ss_dssp             HHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh----------cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence            4444455555554443          345556677889999999999999999999999999999999998889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          144 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       144 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      |.++...|++++|+.++++++++....++.+....++..+|.+|...|++++|..++++++++.+
T Consensus       270 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888777888999999999999999999999999998865

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.56  E-value=5.6e-14  Score=120.54  Aligned_cols=119  Identities=15%  Similarity=0.229  Sum_probs=88.4

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      .+.++..|++++...+.                ...+++++|.++..+|++++|+.+|++++++.+.      .+.++++
T Consensus        25 ~~eAi~~~~kAl~l~P~----------------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------~~~a~~n   82 (723)
T 4gyw_A           25 IEEAVRLYRKALEVFPE----------------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT------FADAYSN   82 (723)
T ss_dssp             HHHHHHHHHHHHHHCSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHH
Confidence            44555566666655443                2446777888888888888888888888886544      5667888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +|.++..+|++++|+.+|++++++.      +..+.+++++|.+|..+|++++|+.+|++|+++.++
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~  143 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQIN------PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD  143 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            8888888888888888888887774      566778888888888888888888888888876553

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.55  E-value=1.5e-13  Score=109.12  Aligned_cols=119  Identities=17%  Similarity=0.220  Sum_probs=110.1

Q ss_pred             ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333           90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus        90 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      .++....+.++..+|.++...|++++|+.++++++.+.+..+++.....++.++|.++...|++++|+.++++++++...
T Consensus       180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  259 (406)
T 3sf4_A          180 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ  259 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            45566677789999999999999999999999999999999999889999999999999999999999999999999988


Q ss_pred             hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          170 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       170 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .++......++.++|.+|...|++++|+.++++++++.+
T Consensus       260 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  298 (406)
T 3sf4_A          260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  298 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            877777789999999999999999999999999998754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.55  E-value=1.8e-13  Score=109.26  Aligned_cols=118  Identities=20%  Similarity=0.324  Sum_probs=102.5

Q ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333           91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      ++......++..+|.+|..+|++++|+.++++++.+.+..++......++..+|.++...|++++|+.++++++++..+.
T Consensus       257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  336 (411)
T 4a1s_A          257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL  336 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence            34444566788899999999999999999999999999888888888899999999999999999999999999998887


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ++......++..+|.+|..+|++++|..+|++++++.+
T Consensus       337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence            77777788899999999999999999999999988764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.54  E-value=1.5e-13  Score=93.22  Aligned_cols=101  Identities=11%  Similarity=0.069  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      +..++.+|..++..|++++|+.+|.+++.+.+.      ...++.++|.++...|++++|+.++++++++.      +..
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~~   76 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELD------GQS   76 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------chh
Confidence            456899999999999999999999999997654      56789999999999999999999999999885      667


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..+++++|.+|..+|++++|+.+|+++++..++
T Consensus        77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            789999999999999999999999999987654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.54  E-value=2e-13  Score=102.94  Aligned_cols=114  Identities=16%  Similarity=0.169  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-  170 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-  170 (210)
                      +..+.++..+|.++...|++++|+.+|++++.+.++.  ++.+....++.++|.++...|++++|+.++++++++.++. 
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  119 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL  119 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence            4567788999999999999999999999999999877  6777889999999999999999999999999999998765 


Q ss_pred             -CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          171 -GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       171 -~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                       .+.+....++.++|.+|...|++++|+.++++++++.
T Consensus       120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  157 (283)
T 3edt_B          120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY  157 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence             3346778899999999999999999999999999873

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.53  E-value=2.5e-13  Score=104.62  Aligned_cols=119  Identities=17%  Similarity=0.220  Sum_probs=109.4

Q ss_pred             ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333           90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus        90 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      .++......++..+|.++...|++++|+.++++++++.+..+++.....++.++|.++...|++++|+.++++++++...
T Consensus       176 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  255 (338)
T 3ro2_A          176 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ  255 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            34555667788999999999999999999999999999999888888999999999999999999999999999999988


Q ss_pred             hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          170 EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       170 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .++......++..+|.+|...|++++|..++++++++.+
T Consensus       256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            877777889999999999999999999999999998754

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.53  E-value=5.9e-13  Score=106.30  Aligned_cols=135  Identities=19%  Similarity=0.267  Sum_probs=105.8

Q ss_pred             HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 028333           64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL  143 (210)
Q Consensus        64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~l  143 (210)
                      ..++..+.+++.....          .++....+.++..+|.+|...|++++|+.+|++++.+.+..++......++.++
T Consensus       103 ~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  172 (411)
T 4a1s_A          103 NKAMQYHKHDLTLAKS----------MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL  172 (411)
T ss_dssp             HHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----------ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence            4444455555554443          455566677788888888888888888888888888888888877788888888


Q ss_pred             HHHHHHcCC-----------------HHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          144 GASLQRQGK-----------------YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       144 g~~~~~~~~-----------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      |.+|...|+                 +++|+.++++++++....++.+....++.++|.+|...|++++|+.++++++++
T Consensus       173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  252 (411)
T 4a1s_A          173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI  252 (411)
T ss_dssp             HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            888888888                 888888888888888777776777778888888888888888888888888876


Q ss_pred             hc
Q 028333          207 LE  208 (210)
Q Consensus       207 ~~  208 (210)
                      .+
T Consensus       253 ~~  254 (411)
T 4a1s_A          253 AR  254 (411)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.53  E-value=7.7e-13  Score=99.69  Aligned_cols=117  Identities=21%  Similarity=0.234  Sum_probs=102.7

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      +......++..+|.++...|++++|+.+|.+++.+.++.  .+.+....++.++|.++...|++++|+.++++++++.+.
T Consensus        80 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  159 (283)
T 3edt_B           80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT  159 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            345567789999999999999999999999999998775  334678889999999999999999999999999999766


Q ss_pred             h--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          170 E--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       170 ~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .  .+.+....++.++|.+|..+|++++|+.++++++++.+
T Consensus       160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            5  33466788999999999999999999999999998743

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.53  E-value=7.6e-14  Score=93.55  Aligned_cols=99  Identities=17%  Similarity=0.148  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      ..+.+|..+...|++++|+..|++++.+.+.      ...+++.+|.++...|++++|+..|++++++.      |....
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------P~~~~   86 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLD------PKDIA   86 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHH
Confidence            3678899999999999999999999997655      67889999999999999999999999999986      66778


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ++.++|.+|...|++++|+.+|+++++..+.
T Consensus        87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           87 VHAALAVSHTNEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            9999999999999999999999999987654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.52  E-value=2.3e-13  Score=98.57  Aligned_cols=113  Identities=20%  Similarity=0.249  Sum_probs=96.4

Q ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH----------HHHHHHHHHHHHHHHcCCHHHHHHHH
Q 028333           91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI----------EEKKAARGLGASLQRQGKYREAIKYH  160 (210)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~----------~~~~~~~~lg~~~~~~~~~~~A~~~~  160 (210)
                      ......+..+..+|..++..|+|++|+..|.+++.+.+...+..          ....++.++|.++...|++++|+.++
T Consensus        32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  111 (198)
T 2fbn_A           32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA  111 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            34455677889999999999999999999999999766532111          12478999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          161 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       161 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ++++++.      +....+++++|.+|..+|++++|+.+|++++++.+.
T Consensus       112 ~~al~~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  154 (198)
T 2fbn_A          112 SKVLKID------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN  154 (198)
T ss_dssp             HHHHHHS------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHhC------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            9999885      666789999999999999999999999999988654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.52  E-value=1.9e-14  Score=100.19  Aligned_cols=97  Identities=11%  Similarity=0.126  Sum_probs=84.1

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHH
Q 028333          102 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG  181 (210)
Q Consensus       102 ~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  181 (210)
                      .+|.++...|++++|+..+++++...+      .....++++|.+|...|+|++|+.+|++++++.      |..+.++.
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p------~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~------p~~~~a~~   69 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPR------QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ------ERDPKAHR   69 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHH------HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHH
Confidence            478899999999999999999988544      478888999999999999999999999999986      77789999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          182 AIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       182 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ++|.+|..+|++++|+.+|++++++.+++
T Consensus        70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~   98 (150)
T 4ga2_A           70 FLGLLYELEENTDKAVECYRRSVELNPTQ   98 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999987653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.52  E-value=1e-13  Score=118.96  Aligned_cols=103  Identities=23%  Similarity=0.274  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      ..+.+++++|.++..+|++++|+.+|++++++.+.      ...+++++|.+|..+|++++|+.+|++++++.      +
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~------P   74 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE------FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS------P   74 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C
Confidence            35667999999999999999999999999998655      67899999999999999999999999999986      7


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..+.+++++|.+|..+|++++|+++|++++++.++
T Consensus        75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~  109 (723)
T 4gyw_A           75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA  109 (723)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            77899999999999999999999999999998654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.52  E-value=2.3e-13  Score=106.86  Aligned_cols=111  Identities=13%  Similarity=0.170  Sum_probs=97.6

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSMV  163 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~---------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  163 (210)
                      +...+.++..+|.+++..|+|++|+..|++++.+.+...+         ......++.++|.++..+|++++|+.+|+++
T Consensus       143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  222 (336)
T 1p5q_A          143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA  222 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4556778899999999999999999999999998776421         2223679999999999999999999999999


Q ss_pred             HHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       164 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +++.      +....+++++|.+|..+|++++|+.+|++++++.++
T Consensus       223 l~~~------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  262 (336)
T 1p5q_A          223 LELD------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN  262 (336)
T ss_dssp             HHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             HHhC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence            9985      667899999999999999999999999999988664

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.50  E-value=8.7e-13  Score=88.01  Aligned_cols=107  Identities=18%  Similarity=0.249  Sum_probs=93.8

Q ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333           91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      .........++.+|..+...|++++|+.+|++++...+.      ...++..+|.++...|++++|+.+++++++..   
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---   76 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICID---   76 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---
Confidence            344556778899999999999999999999999987543      46789999999999999999999999999874   


Q ss_pred             CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          171 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       171 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                         +....++..+|.++...|++++|+.+|+++++..++
T Consensus        77 ---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  112 (131)
T 2vyi_A           77 ---PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPD  112 (131)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             ---ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence               555789999999999999999999999999987654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.50  E-value=7e-13  Score=86.95  Aligned_cols=102  Identities=16%  Similarity=0.259  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      .+..++.+|..+...|++++|+..|++++...+.      ...++.++|.++...|++++|+.+++++++..      +.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~   70 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------PD   70 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TT
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC------cc
Confidence            3456888999999999999999999999997544      46789999999999999999999999999875      55


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ...++.++|.++...|++++|..+++++++..++
T Consensus        71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  104 (118)
T 1elw_A           71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN  104 (118)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            6789999999999999999999999999987654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.50  E-value=9.7e-13  Score=87.89  Aligned_cols=107  Identities=18%  Similarity=0.361  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCCc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYS  174 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~  174 (210)
                      .+..++.+|..+...|++++|+.+|++++...+.      ...++.++|.++...|++++|+.+++++++..... .+..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence            3557889999999999999999999999997543      46788999999999999999999999999987543 2222


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ....+++++|.+|...|++++|..+|+++++..+
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            3378999999999999999999999999998754

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.49  E-value=7e-13  Score=92.54  Aligned_cols=104  Identities=15%  Similarity=0.187  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  173 (210)
                      ...+..++.+|.+++..|++++|+.+|++++.+.+.      ...++.++|.++...|++++|+.+++++++..      
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------   77 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELD------   77 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence            445677899999999999999999999999997554      46788999999999999999999999999875      


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +....+++++|.++..+|++++|+.+|+++++..++
T Consensus        78 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~  113 (166)
T 1a17_A           78 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH  113 (166)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            556789999999999999999999999999987654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.49  E-value=8.5e-13  Score=96.55  Aligned_cols=101  Identities=16%  Similarity=0.203  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH----------------HHHHHHHcCCHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG----------------LGASLQRQGKYREAIKYH  160 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~----------------lg~~~~~~~~~~~A~~~~  160 (210)
                      +..++..|..+...|++++|+..|++++.+.+.      ...+++.                +|.++...|++++|+..|
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~   77 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY   77 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            345788899999999999999999999997655      5667777                999999999999999999


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          161 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       161 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ++++++.      |....++.++|.+|...|++++|+.+|++++++.++
T Consensus        78 ~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~  120 (208)
T 3urz_A           78 KELLQKA------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD  120 (208)
T ss_dssp             HHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            9999886      677899999999999999999999999999998765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.49  E-value=3.1e-13  Score=96.42  Aligned_cols=101  Identities=20%  Similarity=0.246  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..+...+|.++...++++.|...+.+++.+.+.      ...++..+|.++...|++++|+.+|++++++.      |..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~------p~~  140 (184)
T 3vtx_A           73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTV------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------PGF  140 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc------chh
Confidence            345777899999999999999999999886554      56788999999999999999999999999885      677


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +.+++++|.+|..+|++++|+.+|++|+++.++
T Consensus       141 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          141 IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            899999999999999999999999999987653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.49  E-value=7.3e-13  Score=88.88  Aligned_cols=105  Identities=14%  Similarity=0.073  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      +++.+|..++..|++++|+..|++++...+.   ......+++.+|.++...|++++|+.+|+++++...   +.+....
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~   77 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN---GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP---THDKAAG   77 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TSTTHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC---CCcccHH
Confidence            3678899999999999999999999986553   333457899999999999999999999999988751   2233478


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +++.+|.+|..+|++++|+.+|+++++..++
T Consensus        78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            8999999999999999999999999987764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.49  E-value=9.7e-13  Score=100.71  Aligned_cols=115  Identities=16%  Similarity=0.196  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      ......++..+|.++...|++++|+.++++++.+.++.  .+.+....++.++|.++...|++++|+.++++++++.++.
T Consensus        65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  144 (311)
T 3nf1_A           65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  144 (311)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence            34456678999999999999999999999999999876  6677788999999999999999999999999999998766


Q ss_pred             --CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          171 --GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       171 --~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                        ++.+....++.++|.+|...|++++|+.+++++++..
T Consensus       145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  183 (311)
T 3nf1_A          145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY  183 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence              5667788899999999999999999999999999874

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.48  E-value=1.1e-12  Score=100.33  Aligned_cols=116  Identities=22%  Similarity=0.307  Sum_probs=103.7

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      +......++..+|.++...|++++|+.++++++++.++.  ++.+....++.++|.++...|++++|+.++++++++.++
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            345567788999999999999999999999999998776  666778899999999999999999999999999999776


Q ss_pred             h--CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          170 E--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       170 ~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      .  ++.+....++..+|.+|...|++++|+.+++++++..
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            5  3456678899999999999999999999999999864

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.48  E-value=7.1e-13  Score=108.32  Aligned_cols=111  Identities=12%  Similarity=0.111  Sum_probs=96.3

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSMV  163 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~---------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  163 (210)
                      ....+..+..+|..++.+++|++|+..|++++.+.+....         ......+++++|.+|..+|+|++|+.+|+++
T Consensus       264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  343 (457)
T 1kt0_A          264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA  343 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4456778899999999999999999999999998876421         2233679999999999999999999999999


Q ss_pred             HHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       164 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +++.      +....+++++|.+|..+|++++|+.+|++++++.++
T Consensus       344 l~~~------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~  383 (457)
T 1kt0_A          344 LGLD------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ  383 (457)
T ss_dssp             HHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred             HhcC------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            9986      667899999999999999999999999999987654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.48  E-value=3.8e-13  Score=99.10  Aligned_cols=96  Identities=10%  Similarity=0.014  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ-----------GKYREAIKYHSMVLQIS  167 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al~~~  167 (210)
                      +++.+|.++...|++++|+..|++++++.+.      ...++.++|.++...           |++++|+..|++++++.
T Consensus        41 a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  114 (217)
T 2pl2_A           41 ALYWLARTQLKLGLVNPALENGKTLVARTPR------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN  114 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC
Confidence            4556666666666666666666666665433      344555555555555           55555555555555543


Q ss_pred             HHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          168 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                            |....++.++|.+|..+|++++|+.+|++++++
T Consensus       115 ------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  147 (217)
T 2pl2_A          115 ------PRYAPLHLQRGLVYALLGERDKAEASLKQALAL  147 (217)
T ss_dssp             ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence                  334445555555555555555555555555443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.47  E-value=4.8e-13  Score=98.79  Aligned_cols=101  Identities=18%  Similarity=0.292  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      ..++..|.+++..|++++|+..|++++++.+.     ....+++++|.++...|++++|+.+|+++++..      +...
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~   76 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-----QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN------YNLA   76 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CSHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-----CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC------cchH
Confidence            46899999999999999999999999997641     133577889999999999999999999998765      7788


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .++..+|.+|..+|++++|+.+|+++++..++
T Consensus        77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  108 (228)
T 4i17_A           77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG  108 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999998765

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.47  E-value=2.7e-13  Score=91.07  Aligned_cols=103  Identities=17%  Similarity=0.223  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      ....+++.+|.++...|++++|+..|++++...+.      ...++.++|.++...|++++|+.+++++++..      +
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~   81 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQLE------P   81 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC------T
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------C
Confidence            35667899999999999999999999999986443      46789999999999999999999999999875      5


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ....+++++|.+|...|++++|+.+|+++++..+.
T Consensus        82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  116 (133)
T 2lni_A           82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS  116 (133)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence            56789999999999999999999999999987653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.46  E-value=6e-13  Score=98.23  Aligned_cols=106  Identities=14%  Similarity=0.090  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-Ccch
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE-YSGS  176 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~  176 (210)
                      .+++++|.++...|++++|+.+|++++.+.+.      ...++.++|.++...|++++|+.+++++++....... ....
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  116 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY  116 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            36777999999999999999999999985443      7889999999999999999999999999987621000 0012


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +.++.++|.++...|++++|+.+|++++++.++
T Consensus       117 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A          117 AIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            367999999999999999999999999987543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.46  E-value=6.6e-13  Score=96.78  Aligned_cols=105  Identities=16%  Similarity=0.027  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG------  171 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~------  171 (210)
                      .+++++|.++...|++++|+.+|++++.+.+.      ...+++++|.++...|++++|+.+|+++++......      
T Consensus        38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  111 (213)
T 1hh8_A           38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  111 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH
Confidence            47899999999999999999999999997544      567899999999999999999999999998764322      


Q ss_pred             ----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          172 ----EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       172 ----~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                          ..+....+++++|.+|..+|++++|+.+|++++++.+
T Consensus       112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A          112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             hccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence                3345678999999999999999999999999998765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.46  E-value=9.5e-13  Score=96.30  Aligned_cols=98  Identities=18%  Similarity=0.203  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  179 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  179 (210)
                      ...+|.++..+|++++|+..|++++++.+.      ...++.++|.++...|++++|+.+|++++++.      |....+
T Consensus        57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------P~~~~a  124 (208)
T 3urz_A           57 ATELALAYKKNRNYDKAYLFYKELLQKAPN------NVDCLEACAEMQVCRGQEKDALRMYEKILQLE------ADNLAA  124 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHH
Confidence            455999999999999999999999997655      57889999999999999999999999999875      333444


Q ss_pred             HHHH-----------------------------------HHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          180 YGAI-----------------------------------ADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       180 ~~~l-----------------------------------g~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ++++                                   |.++...|++++|+.+|++++++.++
T Consensus       125 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          125 NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            4444                                   44555566789999999999987664

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.46  E-value=1.3e-12  Score=104.06  Aligned_cols=110  Identities=15%  Similarity=0.149  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC----------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----------DPIEEKKAARGLGASLQRQGKYREAIKYHSMV  163 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~----------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  163 (210)
                      ...+..+..+|..++..|+|++|+..|++++.+.+...          ..+....++.++|.+|..+|++++|+.+++++
T Consensus       220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34566788999999999999999999999999766531          34556789999999999999999999999999


Q ss_pred             HHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       164 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +++.      +....+++++|.+|..+|++++|+.+|++++++.++
T Consensus       300 l~~~------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~  339 (370)
T 1ihg_A          300 LEID------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  339 (370)
T ss_dssp             HTTC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHhC------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            8864      667899999999999999999999999999988664

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.45  E-value=7.3e-13  Score=97.54  Aligned_cols=100  Identities=19%  Similarity=0.203  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRN-----------QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ  165 (210)
Q Consensus        97 ~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  165 (210)
                      ..+++.+|.++..+           |++++|+..|++++++.+.      ...++.++|.++...|++++|+..|+++++
T Consensus        73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  146 (217)
T 2pl2_A           73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR------YAPLHLQRGLVYALLGERDKAEASLKQALA  146 (217)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence            44678899999999           9999999999999997554      567889999999999999999999999988


Q ss_pred             HHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          166 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +.       ....++.++|.+|...|++++|+.+|+++++..++
T Consensus       147 ~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  183 (217)
T 2pl2_A          147 LE-------DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK  183 (217)
T ss_dssp             HC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             cc-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            73       34678899999999999999999999999987664

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.6e-12  Score=88.99  Aligned_cols=105  Identities=19%  Similarity=0.240  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      .+..++.+|..++..|++++|+..|++++.+.+   +......++.++|.++...|++++|+.+++++++..      +.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~   97 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDA---TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD------GG   97 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------SC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC------cc
Confidence            456789999999999999999999999998543   233347899999999999999999999999999874      55


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ...+++++|.+|..+|++++|+.+|+++++..++
T Consensus        98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  131 (148)
T 2dba_A           98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK  131 (148)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            6789999999999999999999999999987654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.45  E-value=4e-13  Score=89.23  Aligned_cols=92  Identities=16%  Similarity=0.129  Sum_probs=75.9

Q ss_pred             hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q 028333          109 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  188 (210)
Q Consensus       109 ~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  188 (210)
                      .+|++++|+.+|++++++.   .+.+....++.++|.++...|++++|+.+|+++++..      |....+++++|.+|.
T Consensus         2 ~~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~   72 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF------PNHQALRVFYAMVLY   72 (117)
T ss_dssp             -----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCchHHHHHHHHHHH
Confidence            4688999999999999851   0134478899999999999999999999999999885      666889999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhhcc
Q 028333          189 ELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       189 ~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .+|++++|+.+++++++..++
T Consensus        73 ~~g~~~~A~~~~~~al~~~p~   93 (117)
T 3k9i_A           73 NLGRYEQGVELLLKIIAETSD   93 (117)
T ss_dssp             HHTCHHHHHHHHHHHHHHHCC
T ss_pred             HcCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999987654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.44  E-value=3.8e-13  Score=87.48  Aligned_cols=99  Identities=17%  Similarity=0.177  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc--h
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--S  176 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~  176 (210)
                      +++.+|.++...|++++|+.+|++++++.+.      ...++.++|.++...|++++|+.+++++++..      +.  .
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------~~~~~   75 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVDCYNYVINVI------EDEYN   75 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS------CCTTC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------cccch
Confidence            4677899999999999999999999997543      45688999999999999999999999998874      44  6


Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTEL-GDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~  209 (210)
                      ..++.++|.++..+ |++++|+++++++++..+.
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            78999999999999 9999999999999987664

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.44  E-value=3.3e-12  Score=91.02  Aligned_cols=119  Identities=21%  Similarity=0.250  Sum_probs=96.9

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      .+.++..|++++...+.                ...++..+|.+|..+|++++|+..+.+++...+.      ...++..
T Consensus        21 ~~~A~~~~~~al~~~p~----------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~   78 (184)
T 3vtx_A           21 FDGAIRAYKKVLKADPN----------------NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------SAEAYYI   78 (184)
T ss_dssp             HHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch------hHHHHHH
Confidence            44455556666654432                2446888999999999999999999998886444      5667888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +|.++...++++.|...++++++..      +....++..+|.+|..+|++++|+.+|++++++.+.
T Consensus        79 ~~~~~~~~~~~~~a~~~~~~a~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~  139 (184)
T 3vtx_A           79 LGSANFMIDEKQAAIDALQRAIALN------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG  139 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence            9999999999999999999998775      666789999999999999999999999999988664

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.44  E-value=3.2e-12  Score=84.53  Aligned_cols=101  Identities=27%  Similarity=0.476  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..+++.+|.++...|++++|+..+++++...+.      ...++..+|.++...|++++|+.+++++++..      +..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~   76 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PNN   76 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------Ccc
Confidence            457888999999999999999999999986443      45688999999999999999999999998874      455


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..++..+|.+|...|++++|..+++++++..+.
T Consensus        77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  109 (125)
T 1na0_A           77 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN  109 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            688999999999999999999999999987654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.43  E-value=2.5e-12  Score=96.83  Aligned_cols=105  Identities=15%  Similarity=0.037  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  172 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  172 (210)
                      ++....+++.+|.++...|++++|+..|++++.+.+.      ...++..+|.++...|++++|+.+|+++++..     
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----  107 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-----  107 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----
Confidence            3446778899999999999999999999999997543      46789999999999999999999999999875     


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          173 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       173 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                       +....++..+|.+|...|++++|+.+|+++++..++
T Consensus       108 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  143 (275)
T 1xnf_A          108 -PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  143 (275)
T ss_dssp             -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             -ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence             555689999999999999999999999999987654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.42  E-value=1.6e-11  Score=96.94  Aligned_cols=115  Identities=11%  Similarity=-0.009  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  173 (210)
                      ...+.++..+|.++...|++++|...+++++.+.+..++......++.++|.++...|++++|+.++++++++.+..++.
T Consensus        50 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~  129 (373)
T 1hz4_A           50 YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE  129 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred             hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence            34556778899999999999999999999999999988888888889999999999999999999999999988776654


Q ss_pred             --cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          174 --SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       174 --~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                        +....++.++|.++...|++++|..++++++++.+
T Consensus       130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A          130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence              55677888999999999999999999999987754

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.40  E-value=6.2e-13  Score=106.22  Aligned_cols=101  Identities=8%  Similarity=0.013  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           97 LLSRLKTGKNFLRNQD-LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~-~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ..+++++|.++..+|+ +++|+..|++++.+.++      ...+++++|.++..+|++++|+.+|++++++.      +.
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld------P~  198 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQVWHHRRVLVEWLRDPSQELEFIADILNQD------AK  198 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------TT
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------cc
Confidence            4467888888888886 88998888888887655      57788888888888888888888888888875      66


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ...+|+++|.++..+|++++|+.+|++++++.+.
T Consensus       199 ~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~  232 (382)
T 2h6f_A          199 NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR  232 (382)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            7788888888888888888888888888877553

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.40  E-value=1.2e-11  Score=101.54  Aligned_cols=109  Identities=13%  Similarity=-0.017  Sum_probs=97.1

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCCcc
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNV-K-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSG  175 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~  175 (210)
                      ....+..+..+|+|++|+..|++++++.++. + +++..+.+++++|.+|..+|+|++|..++++++++.++.  .+++.
T Consensus       312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  391 (490)
T 3n71_A          312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ  391 (490)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            3455666889999999999999999998875 3 557789999999999999999999999999999998874  46677


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .+..++++|.+|..+|++++|...|++|+++.+
T Consensus       392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~  424 (490)
T 3n71_A          392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL  424 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999864

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.40  E-value=6.5e-12  Score=89.08  Aligned_cols=101  Identities=13%  Similarity=0.145  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHHHHHhCCC
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGAS-LQRQGKY--REAIKYHSMVLQISEREGEY  173 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~-~~~~~~~--~~A~~~~~~al~~~~~~~~~  173 (210)
                      ..+++.+|.++...|++++|+.+|++++.+.+.      ...++.++|.+ +...|++  ++|+.+++++++..      
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~------  111 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALATVLYYQASQHMTAQTRAMIDKALALD------  111 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC------
Confidence            346889999999999999999999999998765      46688999999 8899999  99999999999875      


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +....+++++|.+|...|++++|+.+|+++++..++
T Consensus       112 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A          112 SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred             CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence            566789999999999999999999999999988764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.39  E-value=1.5e-11  Score=101.08  Aligned_cols=114  Identities=11%  Similarity=-0.066  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-  170 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-  170 (210)
                      ...+.++.++|.+|..+|+|++|+.++++++++.++.  .+++..+.+++++|.+|..+|+|++|..++++|+++.... 
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l  427 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH  427 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            4567788999999999999999999999999999875  3667889999999999999999999999999999999874 


Q ss_pred             -CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          171 -GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       171 -~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                       .+++..+....+++.++.+++.+++|...|.++.+.+
T Consensus       428 G~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          428 GPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4667788899999999999999999999999998755

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.39  E-value=3.2e-12  Score=103.91  Aligned_cols=114  Identities=15%  Similarity=0.015  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  172 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  172 (210)
                      .+..++.+|.++..+|++++|+.+|++|+++.+....   .+....++.++|.+|..+|++++|+.++++++++.+....
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            4556788999999999999999999999999876533   2345678999999999999999999999999999887544


Q ss_pred             C--cchHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhhcc
Q 028333          173 Y--SGSTEAYGAIADCYTEL--GDLERAARFYDKYISRLES  209 (210)
Q Consensus       173 ~--~~~~~~~~~lg~~y~~~--g~~~~A~~~~~~al~~~~~  209 (210)
                      .  ...+.++.++|.++...  +++++|+.+|++++++.++
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~  170 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK  170 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Confidence            2  34677888888877665  5799999999999988654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.38  E-value=1.6e-11  Score=91.30  Aligned_cols=106  Identities=17%  Similarity=0.192  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC--------------------ChHHHHHHHHHHHHHHHHcCCHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK--------------------DPIEEKKAARGLGASLQRQGKYREA  156 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~--------------------~~~~~~~~~~~lg~~~~~~~~~~~A  156 (210)
                      ..++..+|.++...|++++|+.+|++++.+.+...                    ..+....++..+|.++...|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            55556666666666666666666666665432211                    3344455556666666666666666


Q ss_pred             HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          157 IKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       157 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +.+++++++..      +....++.++|.+|...|++++|+.+++++++..+
T Consensus       159 ~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  204 (258)
T 3uq3_A          159 VKAYTEMIKRA------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP  204 (258)
T ss_dssp             HHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhcC------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence            66666665553      33445666666666666666666666666665543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.37  E-value=1.3e-11  Score=91.78  Aligned_cols=102  Identities=16%  Similarity=0.178  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  173 (210)
                      +....++..+|.++...|++++|+..|++++.+.+.      ...++.++|.++...|++++|+.+++++++..      
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------  203 (258)
T 3uq3_A          136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKD------  203 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------
Confidence            345667899999999999999999999999997554      46789999999999999999999999998875      


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +....++..+|.+|..+|++++|..+|++++++.
T Consensus       204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            5667899999999999999999999999999887

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.37  E-value=2e-11  Score=98.79  Aligned_cols=104  Identities=10%  Similarity=0.057  Sum_probs=92.4

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCCcchHHHH
Q 028333          105 KNFLRNQDLEKAFTEFKAALELAQNV-K-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAY  180 (210)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~al~l~~~~-~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~  180 (210)
                      ......|+|++|+..|++++++.++. + +++..+.+++++|.+|..+|+|++|+.++++++++.++.  .+++..+..+
T Consensus       306 ~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  385 (433)
T 3qww_A          306 RRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW  385 (433)
T ss_dssp             HHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence            33445789999999999999998874 3 557788999999999999999999999999999999874  4567889999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          181 GAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       181 ~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +++|.+|..+|++++|+.+|++|+++.+
T Consensus       386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~~  413 (433)
T 3qww_A          386 LKLGRLYMGLENKAAGEKALKKAIAIME  413 (433)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.37  E-value=3.6e-12  Score=97.57  Aligned_cols=101  Identities=11%  Similarity=0.069  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      +..+..+|..++..|+|++|+..|++++.+.+.      ...++.++|.+|...|++++|+..+++++++.      +..
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~   71 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELD------GQS   71 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------TTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCC
Confidence            346788999999999999999999999997554      56789999999999999999999999998764      667


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..+++++|.+|..+|++++|+.+|++++++.++
T Consensus        72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  104 (281)
T 2c2l_A           72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            889999999999999999999999999987653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.36  E-value=2.6e-11  Score=95.74  Aligned_cols=134  Identities=13%  Similarity=0.077  Sum_probs=111.0

Q ss_pred             HHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh--HHHHHHHH
Q 028333           64 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEEKKAAR  141 (210)
Q Consensus        64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~--~~~~~~~~  141 (210)
                      ..+...+.+++...+.          .++....+.+..++|.++...|++++|+.++++++.+.+..++.  +....++.
T Consensus        70 ~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  139 (373)
T 1hz4_A           70 TRSLALMQQTEQMARQ----------HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR  139 (373)
T ss_dssp             HHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh----------cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHH
Confidence            4444555555555544          45555667788999999999999999999999999999987765  66778899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          142 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ++|.++...|++++|..++++++++....++.. ...++.++|.++...|++++|..++++++.+.+
T Consensus       140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999876554333 567899999999999999999999999987643

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.36  E-value=2.2e-11  Score=85.93  Aligned_cols=98  Identities=21%  Similarity=0.243  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      ++..+|.++...|++++|+.++++++...+.      ...++..+|.++...|++++|+.+++++++..      +....
T Consensus        78 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~  145 (186)
T 3as5_A           78 VATVLGLTYVQVQKYDLAVPLLIKVAEANPI------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR------PNEGK  145 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------ccchH
Confidence            3455555666666666666666665554322      23455566666666666666666666665543      33355


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ++..+|.++...|++++|..+++++++..+
T Consensus       146 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  175 (186)
T 3as5_A          146 VHRAIAFSYEQMGRHEEALPHFKKANELDE  175 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            666666666666666666666666665544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.35  E-value=6.9e-12  Score=94.52  Aligned_cols=107  Identities=15%  Similarity=0.118  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR--------QGKYREAIKYHSMVLQISE  168 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~--------~~~~~~A~~~~~~al~~~~  168 (210)
                      ..+++.+|.+|+.+|++++|+..|++++++.+.   .+....+++.+|.++..        .|++++|+..|+++++...
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  128 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQI---DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP  128 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC---CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence            457899999999999999999999999997654   23356789999999999        9999999999999988752


Q ss_pred             HhCCCcchHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          169 REGEYSGSTEAY--------------GAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       169 ~~~~~~~~~~~~--------------~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                         +.+....+.              +.+|.+|...|++++|+..|+++++..++
T Consensus       129 ---~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  180 (261)
T 3qky_A          129 ---NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD  180 (261)
T ss_dssp             ---TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             ---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence               222333343              89999999999999999999999987654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.35  E-value=1.2e-11  Score=87.22  Aligned_cols=119  Identities=13%  Similarity=0.130  Sum_probs=99.1

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      ...++..+.+.+...+.                ...++..+|.++...|++++|+.+++++++..+.      ...++..
T Consensus        24 ~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~   81 (186)
T 3as5_A           24 YSQAVMLLEQVYDADAF----------------DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD------NVKVATV   81 (186)
T ss_dssp             HHHHHHHHTTTCCTTSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcc----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHH
Confidence            34455666776665432                2446888999999999999999999999987443      4678899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +|.++...|++++|+.+++++++..      +....++..+|.++...|++++|+.+++++++..+.
T Consensus        82 ~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  142 (186)
T 3as5_A           82 LGLTYVQVQKYDLAVPLLIKVAEAN------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN  142 (186)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcC------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc
Confidence            9999999999999999999998874      556788999999999999999999999999987543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.34  E-value=5.7e-12  Score=97.16  Aligned_cols=107  Identities=21%  Similarity=0.286  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP---IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  173 (210)
                      ..++..+|.++...|++++|+.++++++.+.+..++.   +....++.++|.++...|++++|+.+++++++..      
T Consensus       193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------  266 (330)
T 3hym_B          193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI------  266 (330)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC------
Confidence            4567889999999999999999999999988765544   2335688899999999999999999999998875      


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +....++.++|.+|..+|++++|..+|++++++.++
T Consensus       267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred             ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence            455688999999999999999999999999887654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.34  E-value=1.6e-11  Score=81.97  Aligned_cols=100  Identities=27%  Similarity=0.466  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      ..+..+|.++...|++++|+.++++++...+.      ...++..+|.++...|++++|+.+++++++..      +...
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~  103 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PRSA  103 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------TTCH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCh
Confidence            35778899999999999999999999986443      35678899999999999999999999998874      4456


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .++..+|.++...|++++|..+++++++..+.
T Consensus       104 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          104 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            78999999999999999999999999987654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.34  E-value=4.2e-12  Score=99.82  Aligned_cols=111  Identities=18%  Similarity=0.213  Sum_probs=90.9

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC-----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-----------PIEEKKAARGLGASLQRQGKYREAIKYHS  161 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~-----------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~  161 (210)
                      ....+..+..+|..++..++|++|+..|++++.+.+....           ......+++++|.+|..+|+|++|+.+|+
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4456778899999999999999999999999987543100           00011488999999999999999999999


Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          162 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       162 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +++++.      +....+++++|.+|..+|++++|+.+|++++++.++
T Consensus       255 ~al~~~------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~  296 (338)
T 2if4_A          255 IVLTEE------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD  296 (338)
T ss_dssp             HHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred             HHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            999885      667889999999999999999999999999887653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.34  E-value=1.8e-11  Score=89.03  Aligned_cols=99  Identities=16%  Similarity=0.135  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ++..++.+|..++..|++++|+..|++++.      .   .+.+++++|.++...|++++|+.+|+++++..      +.
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~   69 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD------P---HSRICFNIGCMYTILKNMTEAEKAFTRSINRD------KH   69 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cc
Confidence            455678999999999999999999999852      1   35689999999999999999999999999885      56


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ...+++++|.+|..+|++++|+.+|+++++..+.
T Consensus        70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  103 (213)
T 1hh8_A           70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG  103 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence            6789999999999999999999999999986553

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.32  E-value=9.4e-11  Score=94.17  Aligned_cols=136  Identities=11%  Similarity=0.075  Sum_probs=118.0

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      .+.+++.+...+.....          .++......+...+|.++...|++++|+.++++++...+..++....+.++.+
T Consensus        71 ~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (434)
T 4b4t_Q           71 KDKLREFIPHSTEYMMQ----------FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK  140 (434)
T ss_dssp             HHHHHHHHHHTHHHHHT----------SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----------ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence            45555566666665544          44445556677889999999999999999999999999999888888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +|.+|...|+|++|+.++++++......++.+....++..+|.+|..+|++++|..++++++.+.+
T Consensus       141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999888888888999999999999999999999999999987653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.31  E-value=1.2e-11  Score=98.78  Aligned_cols=105  Identities=13%  Similarity=0.072  Sum_probs=95.5

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhC
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQISEREG  171 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~  171 (210)
                      ++....++..+|.++...|++++|+..|++++.+.+.      ...+++++|.++..+|+ +++|+.+|++++++.    
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~----  162 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ----  162 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC----
Confidence            4445667889999999999999999999999998665      67899999999999997 999999999999986    


Q ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       172 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                        +....+|+++|.++..+|++++|+.+|++++++.++
T Consensus       163 --P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~  198 (382)
T 2h6f_A          163 --PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK  198 (382)
T ss_dssp             --TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             --CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence              778899999999999999999999999999988664

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.31  E-value=4e-11  Score=79.97  Aligned_cols=99  Identities=27%  Similarity=0.480  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      +++.+|.++...|++++|+..+++++...+.      ...++..+|.++...|++++|+.+++++++..      +....
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~   70 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PRSAE   70 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC------CCchH
Confidence            5678899999999999999999999886433      35678899999999999999999999998774      44567


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ++..+|.++...|++++|+.+++++++..+.
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  101 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR  101 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            8999999999999999999999999987553

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.30  E-value=2e-11  Score=90.19  Aligned_cols=100  Identities=21%  Similarity=0.253  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      .++..+|.++...|++++|+.++++++.+.+.      ...++..+|.++...|++++|+.+++++++..      +...
T Consensus       126 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~  193 (243)
T 2q7f_A          126 DLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------DTEARFQFGMCLANEGMLDEALSQFAAVTEQD------PGHA  193 (243)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC------TTCH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cccH
Confidence            35788899999999999999999999886543      45678899999999999999999999998774      4556


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .++..+|.+|...|++++|..+|+++++..++
T Consensus       194 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  225 (243)
T 2q7f_A          194 DAFYNAGVTYAYKENREKALEMLDKAIDIQPD  225 (243)
T ss_dssp             HHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence            78999999999999999999999999987654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.30  E-value=6.2e-12  Score=94.74  Aligned_cols=100  Identities=13%  Similarity=0.179  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      ++..+|.++...|++++|+.+++++++. +  .++.....++..+|.++...|++++|+.+|+++++..      +....
T Consensus        39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~------~~~~~  109 (272)
T 3u4t_A           39 IYNRRAVCYYELAKYDLAQKDIETYFSK-V--NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD------TTRLD  109 (272)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHTT-S--CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCTH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhc-c--CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC------cccHH
Confidence            4566677777777777777777777662 1  2333345566777777777777777777777776654      34446


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ++..+|.+|...|++++|+.+|+++++..
T Consensus       110 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~  138 (272)
T 3u4t_A          110 MYGQIGSYFYNKGNFPLAIQYMEKQIRPT  138 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence            67777777777777777777777666543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.30  E-value=1.9e-11  Score=96.11  Aligned_cols=101  Identities=20%  Similarity=0.211  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..++..+|.++...|++++|+..|++++++.+.      ...++.++|.++...|++++|+.+|++++++.      +..
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~  280 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE------DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ------PGF  280 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCc
Confidence            446788999999999999999999999997554      46789999999999999999999999999885      566


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..++.++|.+|..+|++++|+.+|++++++.++
T Consensus       281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  313 (365)
T 4eqf_A          281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRK  313 (365)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            889999999999999999999999999988754

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.30  E-value=2.3e-11  Score=81.97  Aligned_cols=97  Identities=13%  Similarity=0.213  Sum_probs=81.6

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      +..++..|.+++...+.                ...+++++|.+|..+|++++|+..|++++++.+.      ...++++
T Consensus        29 ~~~A~~~~~~al~~~p~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~~   86 (126)
T 4gco_A           29 YPTAMRHYNEAVKRDPE----------------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK------FIKGYIR   86 (126)
T ss_dssp             HHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC----------------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh------hhHHHHH
Confidence            56666677777665443                3457899999999999999999999999997554      5778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  187 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  187 (210)
                      +|.++..+|++++|+..|++++++.      |....++.+++.|+
T Consensus        87 lg~~~~~~~~~~~A~~~~~~al~l~------P~~~~a~~~l~~~l  125 (126)
T 4gco_A           87 KAACLVAMREWSKAQRAYEDALQVD------PSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC------cCCHHHHHHHHHhc
Confidence            9999999999999999999999986      77778888888764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.30  E-value=1.4e-11  Score=103.00  Aligned_cols=99  Identities=14%  Similarity=0.062  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      .++..+|.++..+|++++|+.+|++++++.+.      ...++.++|.++...|++++|+.+++++++..      +...
T Consensus        58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~  125 (568)
T 2vsy_A           58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAPE------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL------PEEP  125 (568)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCH
Confidence            34566666666666666666666666665333      34566666666666666666666666666653      4445


Q ss_pred             HHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhc
Q 028333          178 EAYGAIADCYTEL---GDLERAARFYDKYISRLE  208 (210)
Q Consensus       178 ~~~~~lg~~y~~~---g~~~~A~~~~~~al~~~~  208 (210)
                      .++.++|.++..+   |++++|...++++++..+
T Consensus       126 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p  159 (568)
T 2vsy_A          126 YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV  159 (568)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence            6666666666666   666666666666666544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.29  E-value=3.2e-11  Score=94.82  Aligned_cols=107  Identities=13%  Similarity=0.211  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH----------------------------------------H
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE----------------------------------------E  136 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~----------------------------------------~  136 (210)
                      ..++..+|.+|..+|++++|+..|++++.+.+.......                                        .
T Consensus       133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  212 (365)
T 4eqf_A          133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID  212 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC
Confidence            446788889999999999999998888887655322110                                        3


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +.++.++|.++...|++++|+.+|+++++..      +....++.++|.+|...|++++|+.+|+++++..++
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  279 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG  279 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            5578899999999999999999999998875      556788999999999999999999999999887654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.29  E-value=6.2e-11  Score=93.01  Aligned_cols=132  Identities=20%  Similarity=0.234  Sum_probs=102.3

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      ...++..|.+++...+....... +.........+.+++++|.++..+|++++|+.+|++++.+.+.      ...++++
T Consensus       163 ~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~  235 (336)
T 1p5q_A          163 YKQALLQYKKIVSWLEYESSFSN-EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN------NEKGLSR  235 (336)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCCS-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccccCCh-HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHH
Confidence            45566667777666554211100 0001122334668899999999999999999999999998654      5778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhh
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA-ARFYDKYISRL  207 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A-~~~~~~al~~~  207 (210)
                      +|.+|..+|++++|+.+|++++++.      +....++.++|.++..+|++++| ...|.+++..+
T Consensus       236 lg~~~~~~g~~~~A~~~~~~al~l~------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          236 RGEAHLAVNDFELARADFQKVLQLY------PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999985      66778999999999999999999 55777777654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.29  E-value=2.9e-11  Score=89.34  Aligned_cols=99  Identities=17%  Similarity=0.237  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      .++..+|.++...|++++|+..+++++++.+.      ...++..+|.++...|++++|+.+++++++..      +...
T Consensus        58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~  125 (243)
T 2q7f_A           58 IPYINFANLLSSVNELERALAFYDKALELDSS------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG------MENG  125 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------CCSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCCH
Confidence            34566666666666666666666666665332      34556666666666666666666666666553      3344


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .++..+|.++...|++++|+.+++++++..+
T Consensus       126 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  156 (243)
T 2q7f_A          126 DLFYMLGTVLVKLEQPKLALPYLQRAVELNE  156 (243)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            5566666666666666666666666665543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.29  E-value=5.1e-11  Score=86.78  Aligned_cols=101  Identities=21%  Similarity=0.188  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           98 LSRLKTGKNFLRN-QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        98 ~~~~~~g~~~~~~-~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      .++..+|.++... |++++|+..++++++    ....+....++.++|.++...|++++|+.+++++++..      +..
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~  146 (225)
T 2vq2_A           77 EINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ------PQF  146 (225)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTC
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Confidence            3567788888888 888888888888877    22233356678888888888888888888888887764      445


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..++..+|.++...|++++|..+++++++..+
T Consensus       147 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            67888888888888888888888888887655

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.29  E-value=1.9e-11  Score=92.11  Aligned_cols=107  Identities=18%  Similarity=0.181  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ...++.+|..++..|+|++|+..|++++...+.   ......+++.+|.+|...|++++|+..|+++++...   +.+..
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~   88 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT---HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ---IDPRV   88 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTTH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC---CCchh
Confidence            446899999999999999999999999985443   333478999999999999999999999999988752   23456


Q ss_pred             HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTE--------LGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~--------~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..+++.+|.+|..        .|++++|+..|+++++..++
T Consensus        89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  129 (261)
T 3qky_A           89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN  129 (261)
T ss_dssp             HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence            7899999999999        99999999999999988764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.29  E-value=3.2e-12  Score=88.81  Aligned_cols=88  Identities=17%  Similarity=0.249  Sum_probs=78.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333          110 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY----------REAIKYHSMVLQISEREGEYSGSTEA  179 (210)
Q Consensus       110 ~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~  179 (210)
                      .+.|++|+..+++++++.+.      .+.++.++|.++...+++          ++|+..|++++++.      |....+
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld------P~~~~A   82 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID------PKKDEA   82 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------TTCHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC------cCcHHH
Confidence            45789999999999998666      788999999999998875          59999999999996      778899


Q ss_pred             HHHHHHHHHHcC-----------CHHHHHHHHHHHHHhhcc
Q 028333          180 YGAIADCYTELG-----------DLERAARFYDKYISRLES  209 (210)
Q Consensus       180 ~~~lg~~y~~~g-----------~~~~A~~~~~~al~~~~~  209 (210)
                      ++++|.+|..+|           ++++|+.+|++|+++-++
T Consensus        83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~  123 (158)
T 1zu2_A           83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD  123 (158)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence            999999999885           899999999999998764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.28  E-value=4.7e-11  Score=93.64  Aligned_cols=101  Identities=20%  Similarity=0.191  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..++..+|.++...|++++|+..|++++.+.+.      ...++.++|.++...|++++|+.+|++++++.      +..
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~~  284 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLWNKLGATLANGNQSEEAVAAYRRALELQ------PGY  284 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCc
Confidence            456788999999999999999999999997544      46789999999999999999999999999875      566


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..++.++|.+|...|++++|+.+|++++++.++
T Consensus       285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  317 (368)
T 1fch_A          285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRK  317 (368)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            789999999999999999999999999987654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.28  E-value=8.7e-13  Score=86.06  Aligned_cols=100  Identities=10%  Similarity=0.129  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      +..++.+|.+++..|++++|+..|++++.+.+.      ...++.++|.++...|++++|+.++++++++....++....
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   77 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR   77 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence            456889999999999999999999999997554      46789999999999999999999999998875221111123


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDK  202 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~  202 (210)
                      ..+++.+|.++..+|+++.|+..+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           78 SKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            78899999999999988887766554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.28  E-value=2.9e-12  Score=105.21  Aligned_cols=102  Identities=16%  Similarity=0.193  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      .+..+..+|..+..+|+|++|+.+|++++++.+.      ...++.++|.+|..+|++++|+.++++++++.      +.
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~   72 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELD------KK   72 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------TT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CC
Confidence            3445667788899999999999999999997554      47789999999999999999999999998874      66


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ...+++++|.+|..+|++++|+.+|++++++.++
T Consensus        73 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~  106 (477)
T 1wao_1           73 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH  106 (477)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            6789999999999999999999999999987654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.27  E-value=8.1e-11  Score=85.70  Aligned_cols=101  Identities=13%  Similarity=0.060  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc-c
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-G  175 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~  175 (210)
                      ...+..+|.++...|++++|+.+++++++..+.      ...++..+|.++...|++++|+.+++++++..      + .
T Consensus       113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~  180 (225)
T 2vq2_A          113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------FPPAFKELARTKMLAGQLGDADYYFKKYQSRV------EVL  180 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------CSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Confidence            456777888888888888888888888876443      35677788888888888888888888887765      4 4


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ....+..++.++...|+.+.|..+++.+.+..++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~  214 (225)
T 2vq2_A          181 QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY  214 (225)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence            5566777888888888888888888877766543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.27  E-value=8.3e-11  Score=81.83  Aligned_cols=100  Identities=19%  Similarity=0.144  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..++..+|.++...|++++|+.++++++.+.+.      ...++.++|.++...|++++|+.+|+++++..      +..
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------p~~  114 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYYRRAASNMALGKFRAALRDYETVVKVK------PHD  114 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCC
Confidence            446889999999999999999999999997544      46789999999999999999999999999875      333


Q ss_pred             HHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          177 TEAY--GAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       177 ~~~~--~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..++  ..++..+...|++++|+..++++..+..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  148 (166)
T 1a17_A          115 KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD  148 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence            3444  5566668899999999999999877653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.27  E-value=4.5e-11  Score=98.05  Aligned_cols=100  Identities=8%  Similarity=-0.030  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc--------CCHHHHHHHH
Q 028333           98 LSRLKTGKNFLRN---------QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ--------GKYREAIKYH  160 (210)
Q Consensus        98 ~~~~~~g~~~~~~---------~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~--------~~~~~A~~~~  160 (210)
                      .++.++|.++..+         |++++|+..|++++++.+.      ...+++++|.+|...        |++++|+.+|
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~  244 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAY  244 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence            5789999999999         9999999999999997654      567899999999999        9999999999


Q ss_pred             HHHHHHHHHhCCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          161 SMVLQISEREGEYS---GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       161 ~~al~~~~~~~~~~---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ++++++.      +   ....+++++|.+|..+|++++|+.+|++++++.++
T Consensus       245 ~~al~~~------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  290 (474)
T 4abn_A          245 AQAEKVD------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA  290 (474)
T ss_dssp             HHHHHHC------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhC------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999885      5   67899999999999999999999999999987654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.26  E-value=3e-11  Score=93.06  Aligned_cols=105  Identities=14%  Similarity=0.161  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC---cc
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY---SG  175 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~  175 (210)
                      .+..+|.++...|++++|+.++++++.+.+.      ...++..+|.++...|++++|+.+++++++.....++.   +.
T Consensus       161 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  234 (330)
T 3hym_B          161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPE------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK  234 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccH
Confidence            4666888899999999999999988886443      46788999999999999999999999999987654443   33


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ...++.++|.+|...|++++|+.+|+++++..++
T Consensus       235 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  268 (330)
T 3hym_B          235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ  268 (330)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            4678999999999999999999999999987654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.25  E-value=1.1e-10  Score=94.40  Aligned_cols=108  Identities=12%  Similarity=0.018  Sum_probs=94.1

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCCcch
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNV-K-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGS  176 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~  176 (210)
                      ...-.-+..+|+|++|+..+++++++..+. + +.+....++.++|.+|..+|+|++|+.++++++++.++.  .+++..
T Consensus       291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~  370 (429)
T 3qwp_A          291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR  370 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence            333445668899999999999999876654 3 456788899999999999999999999999999999874  466778


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +..++++|.+|..+|++++|+.+|++|+++.+
T Consensus       371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~  402 (429)
T 3qwp_A          371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR  402 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999864

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.25  E-value=1.2e-10  Score=86.72  Aligned_cols=98  Identities=16%  Similarity=0.167  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      ++..+|.++...|++++|+.++++++.    .+..+....++..+|.++...|++++|+.+++++++..      +....
T Consensus       107 ~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------~~~~~  176 (252)
T 2ho1_A          107 VLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN------RNQPS  176 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SCCHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------cccHH
Confidence            445556666666666666666666554    11122244555566666666666666666666665543      33345


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      ++..+|.+|...|++++|..+++++++.
T Consensus       177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~  204 (252)
T 2ho1_A          177 VALEMADLLYKEREYVPARQYYDLFAQG  204 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5556666666666666666666555543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.25  E-value=1e-10  Score=89.96  Aligned_cols=101  Identities=19%  Similarity=0.232  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..++..+|.++...|++++|+..+++++...+.      ...++..+|.++...|++++|+.+++++++..      +..
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~  239 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPD------DAQLWNKLGATLANGNRPQEALDAYNRALDIN------PGY  239 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCC
Confidence            456888999999999999999999999987543      46788999999999999999999999998875      556


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..++..+|.+|...|++++|+.+|+++++..+.
T Consensus       240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            789999999999999999999999999987654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.24  E-value=6.8e-11  Score=88.06  Aligned_cols=103  Identities=15%  Similarity=0.185  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..++..+|.++...|++++|+..+++++++.+.      ...++..+|.++...|++++|+.+++++++    .+..+..
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~  140 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSR------NARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPER  140 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCccc
Confidence            456888999999999999999999999987543      467889999999999999999999999976    2234667


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..++..+|.+|...|++++|+.+++++++..+.
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  173 (252)
T 2ho1_A          141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN  173 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence            889999999999999999999999999987653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.24  E-value=1.5e-10  Score=96.69  Aligned_cols=107  Identities=19%  Similarity=0.165  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      .++..+|.++...|++++|+..|++++++.++.+..+. ...++..+|.++...|++++|+..|+++++..      +..
T Consensus       476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~  549 (597)
T 2xpi_A          476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS------TND  549 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------SCC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCC
Confidence            45788899999999999999999999998877554444 37789999999999999999999999998874      556


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ..++..+|.+|...|++++|..+|++++++.+++
T Consensus       550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNE  583 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence            7899999999999999999999999999887653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.24  E-value=1.9e-10  Score=96.12  Aligned_cols=101  Identities=17%  Similarity=0.097  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..++..+|.++..+|++++|+.+|++++++.+.      ...++.++|.++...|++++|+.+++++++..      +..
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~   90 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPG------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAA------PEH   90 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCC
Confidence            456899999999999999999999999996544      57789999999999999999999999999885      566


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..++.++|.+|...|++++|+.+|+++++..++
T Consensus        91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  123 (568)
T 2vsy_A           91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE  123 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            889999999999999999999999999987654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.22  E-value=4.8e-11  Score=94.66  Aligned_cols=99  Identities=19%  Similarity=0.296  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..++..+|.++...|++++|+..|++++.+.+.      ...++.++|.++...|++++|+.+|+++++..      +..
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~  304 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKGSVAEAEDCYNTALRLC------PTH  304 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------ccc
Confidence            345667777777777888887777777764332      34567777777777777777777777776653      444


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ..++.++|.++...|++++|+..|+++++..
T Consensus       305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  335 (388)
T 1w3b_A          305 ADSLNNLANIKREQGNIEEAVRLYRKALEVF  335 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            5566666666666666666666666666543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.22  E-value=6.7e-11  Score=93.84  Aligned_cols=99  Identities=18%  Similarity=0.268  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      ++..+|.++...|++++|+..|++++.+.+.      ...++.++|.++...|++++|+..|+++++..      +....
T Consensus       205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~  272 (388)
T 1w3b_A          205 AYINLGNVLKEARIFDRAVAAYLRALSLSPN------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ------PHFPD  272 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC------SSCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHH
Confidence            4566677777777777777777777665432      45677788888888888888888888887653      55667


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ++.++|.++...|++++|+.+|+++++..++
T Consensus       273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  303 (388)
T 1w3b_A          273 AYCNLANALKEKGSVAEAEDCYNTALRLCPT  303 (388)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence            8888888888888888888888888876553

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.21  E-value=1e-10  Score=88.05  Aligned_cols=108  Identities=19%  Similarity=0.119  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCC
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK---YREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~~~~  173 (210)
                      ..+++.+|...+..+++++|+..|++++++.+.      ...++..+|.++...++   +++|+.++++++++....++.
T Consensus       142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  215 (272)
T 3u4t_A          142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKPN------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK  215 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc
Confidence            446788994445566999999999999997654      46788999999999999   999999999999987544332


Q ss_pred             --cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          174 --SGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       174 --~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                        .....++..+|.+|...|++++|+.+|++++++.+++
T Consensus       216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  254 (272)
T 3u4t_A          216 YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN  254 (272)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence              2245789999999999999999999999999987754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.21  E-value=6e-10  Score=89.46  Aligned_cols=146  Identities=10%  Similarity=0.029  Sum_probs=116.3

Q ss_pred             HHHHHhcccccccccccccCCCCccccc-cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIV-DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR  141 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~  141 (210)
                      +..+++.|.+.+...+............ ........++..+|.+|..+|++++|++++.+++.+.+..++......+..
T Consensus        20 y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   99 (434)
T 4b4t_Q           20 YNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKT   99 (434)
T ss_dssp             HHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence            4445555666655544322211111111 112233456889999999999999999999999999998887777778889


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          142 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       142 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .+|.++...|++++|+.++++++.+..+.++....+.++.++|.+|...|++++|...+++++....
T Consensus       100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~  166 (434)
T 4b4t_Q          100 LIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK  166 (434)
T ss_dssp             HHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888888999999999999999999999999999887643

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.21  E-value=1e-10  Score=78.78  Aligned_cols=68  Identities=16%  Similarity=0.251  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          135 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       135 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..+.++.++|.+++..|+|++|+.+|++++++.      |..+.++.++|.+|..+|++++|+.+|++++++.+
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~   73 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR   73 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence            367788999999999999999999999999985      66788999999999999999999999999998765

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.21  E-value=1.5e-10  Score=72.51  Aligned_cols=84  Identities=26%  Similarity=0.442  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ....++.+|.++...+++++|+.+|++++.+.+.      ...++.++|.++...|++++|+.++++++++.      +.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------p~   75 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PN   75 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------CC
Confidence            4557889999999999999999999999987543      46688999999999999999999999999875      56


Q ss_pred             hHHHHHHHHHHHHHcC
Q 028333          176 STEAYGAIADCYTELG  191 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g  191 (210)
                      ...++.++|.++..+|
T Consensus        76 ~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           76 NAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            6788999999988765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.21  E-value=1.7e-10  Score=89.63  Aligned_cols=100  Identities=20%  Similarity=0.216  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      +..++.+|..++..|++++|+..|+++++..+.      ...++..+|.++...|++++|+.+++++++..      +..
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~   70 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD------NYIAYYRRATVFLAMGKSKAALPDLTKVIALK------MDF   70 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCc
Confidence            456889999999999999999999999996544      46789999999999999999999999999874      556


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..++..+|.+|...|++++|+.+|+++++..+
T Consensus        71 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           71 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred             chHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            78999999999999999999999999988755

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.21  E-value=1.5e-10  Score=85.43  Aligned_cols=106  Identities=8%  Similarity=-0.045  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      ..++.+|..++..|+|++|+..|++++...+.   ......+++.+|.+|...|++++|+..|+++++...   +.+...
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P---~~~~~~   78 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPF---GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP---THPNID   78 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTTHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCcHH
Confidence            46788999999999999999999999986543   333567899999999999999999999999987752   233455


Q ss_pred             HHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhhcc
Q 028333          178 EAYGAIADCYTE------------------LGDLERAARFYDKYISRLES  209 (210)
Q Consensus       178 ~~~~~lg~~y~~------------------~g~~~~A~~~~~~al~~~~~  209 (210)
                      .+++.+|.+|..                  .|++++|+..|+++++..++
T Consensus        79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~  128 (225)
T 2yhc_A           79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN  128 (225)
T ss_dssp             HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence            689999999886                  57999999999999987764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.20  E-value=3.4e-10  Score=87.98  Aligned_cols=102  Identities=16%  Similarity=0.211  Sum_probs=89.8

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  179 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  179 (210)
                      ...+|.++...|++++|+..+++++...+.  ++.....++..+|.++...|++++|+.+++++++..      +....+
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~  308 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME------PDNVNA  308 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------cccHHH
Confidence            345699999999999999999999997654  445556678899999999999999999999999874      666789


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          180 YGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +..+|.+|...|++++|..+|++++++.++
T Consensus       309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~  338 (359)
T 3ieg_A          309 LKDRAEAYLIEEMYDEAIQDYEAAQEHNEN  338 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999988765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.20  E-value=9e-12  Score=106.53  Aligned_cols=99  Identities=20%  Similarity=0.141  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..+++++|.++..+|++++|+..|++++++.+.      ...+++++|.++..+|++++ +.+|++++++.      +..
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~------P~~  533 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG------ELAPKLALAATAELAGNTDE-HKFYQTVWSTN------DGV  533 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC------Cch
Confidence            446888999999999999999999999997655      46788899999999999999 99999998875      667


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..+++++|.+|..+|++++|+.+|++++++.+
T Consensus       534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  565 (681)
T 2pzi_A          534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSR  565 (681)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCc
Confidence            78999999999999999999999999987654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.19  E-value=2e-10  Score=90.06  Aligned_cols=100  Identities=19%  Similarity=0.190  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      ..++.+|.++...|++++|+..|++++++.+.      ...++..+|.++...|++++|+.+|+++++..      +...
T Consensus        65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~~~  132 (368)
T 1fch_A           65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK------HMEAWQYLGTTQAENEQELLAISALRRCLELK------PDNQ  132 (368)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC------CCCH
Confidence            35788999999999999999999999986443      56789999999999999999999999999875      5667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .++..+|.+|...|++++|+.+++++++..+.
T Consensus       133 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  164 (368)
T 1fch_A          133 TALMALAVSFTNESLQRQACEILRDWLRYTPA  164 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            89999999999999999999999999987653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.18  E-value=8.3e-11  Score=90.47  Aligned_cols=107  Identities=10%  Similarity=0.126  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc-
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-  175 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-  175 (210)
                      ..++..+|.++...|++++|+..+++++.+.+.      ...++..+|.++...|++++|+.+++++++......+... 
T Consensus       206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  279 (327)
T 3cv0_A          206 AQLWNKLGATLANGNRPQEALDAYNRALDINPG------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE  279 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence            346788999999999999999999999997543      4668899999999999999999999999988743221111 


Q ss_pred             -----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          176 -----STEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       176 -----~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                           ...++..+|.++..+|++++|...++++++..++
T Consensus       280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  318 (327)
T 3cv0_A          280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK  318 (327)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred             chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence                 6789999999999999999999999998887653

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.18  E-value=2.6e-10  Score=85.72  Aligned_cols=107  Identities=18%  Similarity=0.176  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-----
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-----  171 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-----  171 (210)
                      ..++..+|.++...|++++|+.+|++++.+.+.      ...++.++|.++...|++++|+.+|+++++......     
T Consensus        77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  150 (275)
T 1xnf_A           77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLW  150 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHH
Confidence            346788888999999999999999998887544      356788889999999999999988888876532100     


Q ss_pred             -------------------------------------------------------CCc----chHHHHHHHHHHHHHcCC
Q 028333          172 -------------------------------------------------------EYS----GSTEAYGAIADCYTELGD  192 (210)
Q Consensus       172 -------------------------------------------------------~~~----~~~~~~~~lg~~y~~~g~  192 (210)
                                                                             ..+    ....++..+|.+|...|+
T Consensus       151 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  230 (275)
T 1xnf_A          151 LYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD  230 (275)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC
Confidence                                                                   000    115778899999999999


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 028333          193 LERAARFYDKYISRLES  209 (210)
Q Consensus       193 ~~~A~~~~~~al~~~~~  209 (210)
                      +++|+.+|+++++..++
T Consensus       231 ~~~A~~~~~~al~~~p~  247 (275)
T 1xnf_A          231 LDSATALFKLAVANNVH  247 (275)
T ss_dssp             HHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHHHhCCch
Confidence            99999999999887653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.18  E-value=1.6e-11  Score=85.38  Aligned_cols=73  Identities=14%  Similarity=0.134  Sum_probs=66.6

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          132 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       132 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ..+....+++++|.++...|++++|+.+|++++++.      |..+.+++++|.+|..+|++++|+.+|++++++.+++
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~  103 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND  103 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence            345588899999999999999999999999999886      7788999999999999999999999999999987653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.18  E-value=2e-10  Score=92.50  Aligned_cols=103  Identities=20%  Similarity=0.223  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  173 (210)
                      +..+..++.+|..++..|++++|+..|++++...+.      ...+++.+|.++...|++++|+.+|+++++..      
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------   90 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD------NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK------   90 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------
Confidence            345667899999999999999999999999986443      47789999999999999999999999999875      


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +....++..+|.+|...|++++|+.+|+++++..+
T Consensus        91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  125 (450)
T 2y4t_A           91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP  125 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            55678999999999999999999999999987654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.17  E-value=6e-10  Score=74.38  Aligned_cols=88  Identities=10%  Similarity=0.002  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..++.++|.++..+|++++|+..|++++.+.+.      ...+++++|.++...|++++|+.+|++++++..+..+.+..
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~  111 (126)
T 3upv_A           38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA  111 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhH
Confidence            457899999999999999999999999997554      57789999999999999999999999999998766666777


Q ss_pred             HHHHHHHHHHHHHc
Q 028333          177 TEAYGAIADCYTEL  190 (210)
Q Consensus       177 ~~~~~~lg~~y~~~  190 (210)
                      ..+...++.+...+
T Consensus       112 ~~~~~~l~~~~~~l  125 (126)
T 3upv_A          112 REIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh
Confidence            78888888876553

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.17  E-value=6.8e-11  Score=96.96  Aligned_cols=101  Identities=16%  Similarity=0.092  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           96 ELLSRLKTGKNFLRNQDL-EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      .+..++.+|.++...|++ ++|+.+|++++++.+.      ...+++++|.+|...|++++|+.+|++++++.      +
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------p  168 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC------K  168 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC------C
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------C
Confidence            456789999999999999 9999999999997554      57799999999999999999999999998874      4


Q ss_pred             chHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhcc
Q 028333          175 GSTEAYGAIADCYTEL---------GDLERAARFYDKYISRLES  209 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~---------g~~~~A~~~~~~al~~~~~  209 (210)
                      . ..++.++|.+|..+         |++++|+.+|++++++.++
T Consensus       169 ~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  211 (474)
T 4abn_A          169 N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL  211 (474)
T ss_dssp             C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence            4 58999999999999         9999999999999988664

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.16  E-value=4.4e-11  Score=102.29  Aligned_cols=100  Identities=19%  Similarity=0.143  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..+++.+|.++..+|++++|+..|++++++.+.      ...+++++|.++...|++++|+..|++++++.      +..
T Consensus       433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~------P~~  500 (681)
T 2pzi_A          433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGW------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTF------PGE  500 (681)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------TTC
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Confidence            346889999999999999999999999998665      57799999999999999999999999999986      666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..+++++|.+|..+|++++ +.+|++++++.++
T Consensus       501 ~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~  532 (681)
T 2pzi_A          501 LAPKLALAATAELAGNTDE-HKFYQTVWSTNDG  532 (681)
T ss_dssp             SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence            7899999999999999999 9999999987654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.16  E-value=5.9e-10  Score=91.03  Aligned_cols=101  Identities=18%  Similarity=0.223  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      ..+..+..+|..++..|+|++|+..|++++...+       ...++.++|.++...|++++|+..++++++..      |
T Consensus         4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p   70 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-------DPVFYSNLSACYVSVGDLKKVVEMSTKALELK------P   70 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------S
T ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-------cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC------h
Confidence            4567889999999999999999999999999642       26789999999999999999999999999874      6


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ....++..+|.+|..+|++++|+..|++++...+
T Consensus        71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  104 (514)
T 2gw1_A           71 DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD  104 (514)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            6778999999999999999999999999987654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.13  E-value=3.7e-10  Score=81.53  Aligned_cols=129  Identities=16%  Similarity=0.196  Sum_probs=90.7

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      ...++..|.+++...+....................++.++|.++..+|++++|+.++++++.+.+.      ...++++
T Consensus        54 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~  127 (198)
T 2fbn_A           54 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN------NVKALYK  127 (198)
T ss_dssp             HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc------cHHHHHH
Confidence            5566666777666544311000000000011112467899999999999999999999999997543      5678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA-RFYDKY  203 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~-~~~~~a  203 (210)
                      +|.++...|++++|+.+|++++++.      +....++..++.++..+++.+++. ..|.+.
T Consensus       128 lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          128 LGVANMYFGFLEEAKENLYKAASLN------PNNLDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999885      666789999999999999888887 344433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.13  E-value=4.3e-10  Score=82.95  Aligned_cols=106  Identities=15%  Similarity=0.074  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH------------------cCCHHHHHHH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR------------------QGKYREAIKY  159 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~------------------~~~~~~A~~~  159 (210)
                      .+++.+|.+|+.+|++++|+..|+++++..+.   ......+++.+|.++..                  .|++++|+..
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~---~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  118 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD  118 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH
Confidence            46889999999999999999999999997665   23345678889988876                  5789999999


Q ss_pred             HHHHHHHHHHhCCCcchH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          160 HSMVLQISEREGEYSGST--------------EAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       160 ~~~al~~~~~~~~~~~~~--------------~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      |+++++....   .+...              .....+|.+|...|++++|+..|+++++..++
T Consensus       119 ~~~~l~~~P~---~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  179 (225)
T 2yhc_A          119 FSKLVRGYPN---SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD  179 (225)
T ss_dssp             HHHHHTTCTT---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHCcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence            9999876522   11111              22367899999999999999999999988754

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.13  E-value=6.1e-10  Score=92.90  Aligned_cols=106  Identities=13%  Similarity=0.144  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch-
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS-  176 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-  176 (210)
                      ..+..+|.+|...|++++|+..|++++++.+.      ...++..+|.++...|++++|+.+|+++++...+.+..+.. 
T Consensus       442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~  515 (597)
T 2xpi_A          442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW  515 (597)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence            45778899999999999999999999886443      45678999999999999999999999999987765555553 


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..++..+|.+|...|++++|+..|+++++..++
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  548 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTN  548 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            789999999999999999999999999987653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.12  E-value=2.3e-10  Score=75.28  Aligned_cols=80  Identities=13%  Similarity=0.157  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHH
Q 028333          116 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER  195 (210)
Q Consensus       116 A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~  195 (210)
                      |+..|++++...+.      ...+++++|.++...|++++|+.+|+++++..      +....+++++|.+|...|++++
T Consensus         4 a~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~   71 (115)
T 2kat_A            4 ITERLEAMLAQGTD------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD------PTYSVAWKWLGKTLQGQGDRAG   71 (115)
T ss_dssp             HHHHHHHHHTTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHhCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHcCCHHH
Confidence            44455555543222      33455556666666666666666666655543      3344555556666666666666


Q ss_pred             HHHHHHHHHHhh
Q 028333          196 AARFYDKYISRL  207 (210)
Q Consensus       196 A~~~~~~al~~~  207 (210)
                      |+.+|++++++.
T Consensus        72 A~~~~~~al~~~   83 (115)
T 2kat_A           72 ARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            666666555543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.12  E-value=1.4e-09  Score=75.61  Aligned_cols=103  Identities=13%  Similarity=0.087  Sum_probs=79.1

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-CChHHHHHHH-
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIEEKKAA-  140 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-~~~~~~~~~~-  140 (210)
                      ++.++..|.+++.+.+.... .  + .....+..+.++.++|.++..+|+|++|+..|+++++++.+. ...+....++ 
T Consensus        27 ~eeAi~~Y~kAL~l~p~~~~-~--~-a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~  102 (159)
T 2hr2_A           27 YDEAAANCRRAMEISHTMPP-E--E-AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWI  102 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTSCT-T--S-CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCcc-h--h-hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHH
Confidence            67788888888887765111 0  1 122333456689999999999999999999999999983322 2223366777 


Q ss_pred             ---HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333          141 ---RGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus       141 ---~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                         +++|.++..+|++++|+..|++++++...
T Consensus       103 ~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A          103 SAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence               99999999999999999999999999854

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.12  E-value=2.8e-10  Score=92.98  Aligned_cols=106  Identities=15%  Similarity=0.176  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---QGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      .++..+|.++...|++++|+.+|++++.+.+..........++.++|.++..   .|++++|+.+++++++..      +
T Consensus       373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~------~  446 (514)
T 2gw1_A          373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD------P  446 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC------T
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC------c
Confidence            3578889999999999999999999999887754433334588999999999   999999999999998874      5


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ....++..+|.+|...|++++|..+|++++++.++
T Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  481 (514)
T 2gw1_A          447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLART  481 (514)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence            56788999999999999999999999999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.12  E-value=4.2e-10  Score=92.54  Aligned_cols=105  Identities=15%  Similarity=0.164  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----------GKYREAIKYHSMVLQISE  168 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~----------~~~~~A~~~~~~al~~~~  168 (210)
                      ++..+|.++...|++++|+..|++++.+.+...........+..+|.++...          |++++|+.+|+++++.. 
T Consensus       380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-  458 (537)
T 3fp2_A          380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-  458 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-
Confidence            5667788888888888888888888887776554444444566777788777          88888888888887764 


Q ss_pred             HhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          169 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       169 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                           +....++..+|.+|...|++++|+.+|++++++.++
T Consensus       459 -----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          459 -----PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART  494 (537)
T ss_dssp             -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             -----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence                 556688999999999999999999999999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.11  E-value=4.4e-10  Score=92.46  Aligned_cols=100  Identities=22%  Similarity=0.222  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..++..+|.++...|++++|+..|++++.+.+.      ...++..+|.++...|++++|+.+++++++..      +..
T Consensus       310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------~~~  377 (537)
T 3fp2_A          310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE------NVYPYIQLACLLYKQGKFTESEAFFNETKLKF------PTL  377 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Confidence            345778888888888888888888888886544      34677888888888899999999888888774      455


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..++..+|.++...|++++|+.+|+++++..+
T Consensus       378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  409 (537)
T 3fp2_A          378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE  409 (537)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence            67888889999999999999999988887654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.09  E-value=1.3e-09  Score=87.71  Aligned_cols=101  Identities=16%  Similarity=0.218  Sum_probs=88.9

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  180 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  180 (210)
                      ..+|.++...|++++|+..|++++.+.+.  ++......+.++|.++...|++++|+.+++++++..      +....++
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~  332 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME------PDNVNAL  332 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------TTCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHH
Confidence            44599999999999999999999986543  444456789999999999999999999999999874      6667899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          181 GAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       181 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..+|.+|...|++++|+.+|++++++.++
T Consensus       333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~  361 (450)
T 2y4t_A          333 KDRAEAYLIEEMYDEAIQDYETAQEHNEN  361 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence            99999999999999999999999987664

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.09  E-value=2.7e-10  Score=92.45  Aligned_cols=134  Identities=10%  Similarity=0.015  Sum_probs=98.1

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh--HHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEEKKAA  140 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~--~~~~~~~  140 (210)
                      .+.+++.+++++...+....       .......+.++.++|.+|..+|++++|+.+|++++.+.+...+.  ...+.++
T Consensus        67 ~~eAl~~~~kAl~~~~~~~~-------~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~  139 (472)
T 4g1t_A           67 NEAALECLRKAEELIQQEHA-------DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD  139 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHSG-------GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCc-------cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence            45666666666665432000       01112235578899999999999999999999999999986543  2346678


Q ss_pred             HHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhhcc
Q 028333          141 RGLGASLQRQ--GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT---ELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       141 ~~lg~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~---~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .++|.++...  ++|++|+.+|++++++.      |..+.++..+|.++.   ..++.++|++.|++++++.+.
T Consensus       140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~------p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~  207 (472)
T 4g1t_A          140 CEEGWTRLKCGGNQNERAKVCFEKALEKK------PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD  207 (472)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence            8888887664  57999999999999885      566677777777754   457778899999998887553

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.09  E-value=3.1e-10  Score=79.31  Aligned_cols=90  Identities=12%  Similarity=0.056  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  172 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  172 (210)
                      .+....+++++|.+|..+|+|++|+.++++++.+.+.      ...+++.+|.++..+|++++|+.+|++++++.     
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-----  127 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH-----  127 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC-----
Confidence            3445668899999999999999999999999998554      67899999999999999999999999999985     


Q ss_pred             CcchH-HHHHHHHHHHHHcCCHH
Q 028333          173 YSGST-EAYGAIADCYTELGDLE  194 (210)
Q Consensus       173 ~~~~~-~~~~~lg~~y~~~g~~~  194 (210)
                       |... .+...++.+...+++..
T Consensus       128 -p~~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A          128 -PAAASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             -GGGHHHHHHHHHHHHHHHHHHT
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHH
Confidence             5544 66777777776655443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.08  E-value=1.3e-09  Score=72.18  Aligned_cols=85  Identities=14%  Similarity=0.144  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..++..+|.++...|++++|+.++.+++.+.+.      ...++..+|.++...|++++|+.+++++++..      +..
T Consensus        46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------p~~  113 (131)
T 2vyi_A           46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA------YSKAYGRMGLALSSLNKHVEAVAYYKKALELD------PDN  113 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTC
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------ccc
Confidence            446888999999999999999999999997443      46688999999999999999999999999875      556


Q ss_pred             HHHHHHHHHHHHHcCCH
Q 028333          177 TEAYGAIADCYTELGDL  193 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~  193 (210)
                      ..++..+|.++..+|++
T Consensus       114 ~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A          114 ETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhcC
Confidence            78899999999998875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.07  E-value=2e-09  Score=81.32  Aligned_cols=93  Identities=17%  Similarity=0.288  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 028333           98 LSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISER  169 (210)
Q Consensus        98 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~  169 (210)
                      .+++.+|.+|..    .+++++|+.+|+++++..        ...+++++|.+|..    .+++++|+.+|+++++.   
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---  107 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---  107 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---
Confidence            456667777777    777777777777776631        35567777777777    77777777777777653   


Q ss_pred             hCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 028333          170 EGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  206 (210)
Q Consensus       170 ~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~  206 (210)
                           ....+++++|.+|..    .+++++|+.+|+++++.
T Consensus       108 -----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  143 (273)
T 1ouv_A          108 -----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL  143 (273)
T ss_dssp             -----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             -----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence                 135677777777777    77777777777777764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.07  E-value=9.2e-10  Score=73.46  Aligned_cols=84  Identities=14%  Similarity=0.175  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..+++.+|.++...+++++|+.++++++.+.+.      ...++.++|.++...|++++|+.+|+++++..      +..
T Consensus        50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~~  117 (133)
T 2lni_A           50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD------SSC  117 (133)
T ss_dssp             HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------GGG
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------CCc
Confidence            446889999999999999999999999997543      56789999999999999999999999999875      556


Q ss_pred             HHHHHHHHHHHHHcCC
Q 028333          177 TEAYGAIADCYTELGD  192 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~  192 (210)
                      ..++..++.++..+|+
T Consensus       118 ~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          118 KEAADGYQRCMMAQYN  133 (133)
T ss_dssp             THHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHhcC
Confidence            6889999999988774

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.06  E-value=1.2e-09  Score=89.12  Aligned_cols=124  Identities=15%  Similarity=0.152  Sum_probs=92.6

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      +..++..|.+++...+...... .+...........+++++|.+|..+++|++|+.+|++++.+.+.      ...++++
T Consensus       284 ~~~A~~~y~~Al~~~p~~~~~~-~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~  356 (457)
T 1kt0_A          284 YMQAVIQYGKIVSWLEMEYGLS-EKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA------NEKGLYR  356 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccCC-hHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHH
Confidence            5556666777766554311000 00001112233668899999999999999999999999997654      5789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF  199 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~  199 (210)
                      +|.+|..+|++++|+.+|++++++.      +....++.+++.++..++++++|...
T Consensus       357 ~g~a~~~~g~~~~A~~~~~~al~l~------P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          357 RGEAQLLMNEFESAKGDFEKVLEVN------PQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998875      56668899999999999999888753

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.05  E-value=1e-09  Score=70.55  Aligned_cols=68  Identities=15%  Similarity=0.247  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      ...+++.+|.++...|++++|+.+|++++++      .+....+++++|.+|...|++++|+..|++++++...
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVET------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            3555666666666666666666666666662      3445556666666666666666666666666666543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.05  E-value=1.1e-09  Score=86.99  Aligned_cols=96  Identities=16%  Similarity=0.135  Sum_probs=83.9

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG  171 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  171 (210)
                      .......+++++|.+|+.+++|++|+.++++++++.+.      ...+++++|.+|..+|++++|+.+|++++++.    
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~----  337 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS------NTKALYRRAQGWQGLKEYDQALADLKKAQEIA----  337 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----
Confidence            34456778999999999999999999999999996443      57889999999999999999999999999885    


Q ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHH
Q 028333          172 EYSGSTEAYGAIADCYTELGDLERAARF  199 (210)
Q Consensus       172 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~  199 (210)
                        +....++..++.++..+++++++...
T Consensus       338 --P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          338 --PEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence              55678899999999999998887653

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.05  E-value=3.1e-10  Score=78.44  Aligned_cols=80  Identities=11%  Similarity=0.124  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHH
Q 028333          118 TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA  197 (210)
Q Consensus       118 ~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~  197 (210)
                      ..|++++.+      .+....+++++|.++...|++++|+..|++++...      +....+++++|.+|..+|++++|+
T Consensus         8 ~~~~~al~~------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~   75 (148)
T 2vgx_A            8 GTIAMLNEI------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD------HYDSRFFLGLGACRQAMGQYDLAI   75 (148)
T ss_dssp             CSHHHHTTC------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHcC------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC------cccHHHHHHHHHHHHHHhhHHHHH
Confidence            345666654      34478899999999999999999999999999875      667889999999999999999999


Q ss_pred             HHHHHHHHhhcc
Q 028333          198 RFYDKYISRLES  209 (210)
Q Consensus       198 ~~~~~al~~~~~  209 (210)
                      .+|++++.+.++
T Consensus        76 ~~~~~al~l~p~   87 (148)
T 2vgx_A           76 HSYSYGAVMDIX   87 (148)
T ss_dssp             HHHHHHHHHSTT
T ss_pred             HHHHHHHhcCCC
Confidence            999999988764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.05  E-value=6e-11  Score=97.43  Aligned_cols=93  Identities=20%  Similarity=0.210  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..++.++|.+|..+|++++|+.+|++++++.+.      ...+++++|.+|..+|++++|+.+|++++++.      +..
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------p~~  107 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYYRRAASNMALGKFRAALRDYETVVKVK------PHD  107 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------TTC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Confidence            557899999999999999999999999996443      57789999999999999999999999999885      444


Q ss_pred             HHHHHHHHHH--HHHcCCHHHHHHHHH
Q 028333          177 TEAYGAIADC--YTELGDLERAARFYD  201 (210)
Q Consensus       177 ~~~~~~lg~~--y~~~g~~~~A~~~~~  201 (210)
                      ..++.+++.+  +...|++++|+..++
T Consensus       108 ~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1          108 KDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5677788888  888999999999998

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.05  E-value=6.4e-09  Score=84.19  Aligned_cols=98  Identities=14%  Similarity=0.037  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-  170 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-  170 (210)
                      ...+.++.++|.+|..+|+|++|+.++++++.+.++.  .+++..+..++++|.+|..+|++++|+.++++|+++.... 
T Consensus       326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~l  405 (429)
T 3qwp_A          326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH  405 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence            4567788999999999999999999999999999875  4668889999999999999999999999999999999874 


Q ss_pred             -CCCcchHHHHHHHHHHHHHcC
Q 028333          171 -GEYSGSTEAYGAIADCYTELG  191 (210)
Q Consensus       171 -~~~~~~~~~~~~lg~~y~~~g  191 (210)
                       .+++....++.+++.+..+++
T Consensus       406 G~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          406 GREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHh
Confidence             466778888999999887653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.04  E-value=2.5e-09  Score=75.79  Aligned_cols=102  Identities=13%  Similarity=0.094  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS------------  167 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------  167 (210)
                      .+..|..+...|++++|+..|++++++.+.      ...++.++|.++...|++++|+..++++++..            
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~   82 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQS------RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKL   82 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHH
Confidence            344455555555555555555555554443      34455555555555555555555554432110            


Q ss_pred             ---HHhC-------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          168 ---EREG-------------EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       168 ---~~~~-------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                         ....             ..|....+++++|.++...|++++|+.+|+++++..
T Consensus        83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  138 (176)
T 2r5s_A           83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN  138 (176)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence               0000             023445666677777777777777777777766654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.01  E-value=1.9e-09  Score=69.24  Aligned_cols=67  Identities=12%  Similarity=0.159  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ...+++++|.++...|++++|+.+|++++++.      +....+++++|.+|..+|++++|+.+|++++++.+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            46689999999999999999999999999886      66678999999999999999999999999998764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.00  E-value=3.9e-09  Score=65.84  Aligned_cols=71  Identities=28%  Similarity=0.493  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          133 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       133 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +.....+++.+|.++...|++++|+.+|+++++..      +....++.++|.+|...|++++|+.+|+++++..++
T Consensus         5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~   75 (91)
T 1na3_A            5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN   75 (91)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            33467789999999999999999999999999875      556789999999999999999999999999987654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.99  E-value=2.3e-09  Score=82.11  Aligned_cols=105  Identities=10%  Similarity=0.043  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI-----------  166 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----------  166 (210)
                      ...+.+|..+...|++++|+..|++++...+.      ...++.++|.++...|++++|+..+++++..           
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~  191 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA  191 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence            35688999999999999999999999997665      5778999999999999999999888886431           


Q ss_pred             ----HH-------------HhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          167 ----SE-------------REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       167 ----~~-------------~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                          ..             .....|....+++++|.+|...|++++|+..|++++...+
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p  250 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL  250 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence                00             0112466778999999999999999999999999998754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.99  E-value=8.1e-09  Score=77.93  Aligned_cols=95  Identities=19%  Similarity=0.295  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 028333           96 ELLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        96 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~  167 (210)
                      ...+++.+|.+|..    .+++++|+.+|+++++.    +    ...+++++|.+|..    .+++++|+.+|+++++..
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~  144 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN  144 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence            34567889999999    99999999999999884    1    46789999999999    999999999999998642


Q ss_pred             HHhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 028333          168 EREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  206 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~  206 (210)
                              ...++.++|.+|..    .+++++|+.+|+++++.
T Consensus       145 --------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          145 --------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             --------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             --------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence                    46789999999999    99999999999999875

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.98  E-value=4.3e-09  Score=73.52  Aligned_cols=65  Identities=15%  Similarity=0.076  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      ..+++++|.+|..+|++++|+.+|++++.+.+.      ...+++++|.++..+|++++|+.+|++++++.
T Consensus        45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            457899999999999999999999999998654      57789999999999999999999999999987

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.98  E-value=3.5e-09  Score=68.58  Aligned_cols=68  Identities=21%  Similarity=0.324  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .+.++.++|.++...|++++|+.+|++++++.      +....+++++|.+|..+|++++|+.+|++++++.++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   70 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST   70 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            45678999999999999999999999999885      566789999999999999999999999999987654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.98  E-value=1.2e-08  Score=82.67  Aligned_cols=90  Identities=14%  Similarity=-0.054  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-  170 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-  170 (210)
                      ...+.++.++|.+|..+|+|++|+.++++++.+.++.  .+++..+..++++|.+|..+|+|++|..++++|+++.... 
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~l  416 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH  416 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Confidence            4567788999999999999999999999999999875  3678889999999999999999999999999999999764 


Q ss_pred             -CCCcchHHHHHHH
Q 028333          171 -GEYSGSTEAYGAI  183 (210)
Q Consensus       171 -~~~~~~~~~~~~l  183 (210)
                       .+++....+..+|
T Consensus       417 G~~Hp~~~~l~~~l  430 (433)
T 3qww_A          417 GKDHPYISEIKQEI  430 (433)
T ss_dssp             CTTCHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHH
Confidence             3445555555554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.97  E-value=2.2e-09  Score=76.08  Aligned_cols=106  Identities=16%  Similarity=0.130  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH---------------HhcCC-------------hHHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELA---------------QNVKD-------------PIEEKKAARGLGASLQ  148 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~---------------~~~~~-------------~~~~~~~~~~lg~~~~  148 (210)
                      ..+++.+|.++...|++++|+..+++++...               ...+.             .+....+++++|.++.
T Consensus        40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~  119 (176)
T 2r5s_A           40 GDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYN  119 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3456667777777777777776665543221               11011             1123568899999999


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          149 RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       149 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      ..|++++|+..|+++++...    .+....++.++|.++..+|+.++|..+|++++..
T Consensus       120 ~~g~~~~A~~~~~~~l~~~p----~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          120 QVGRDEEALELLWNILKVNL----GAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             HTTCHHHHHHHHHHHHTTCT----TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHhCc----ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence            99999999999999987641    1123568999999999999999999999999864

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.97  E-value=5.2e-09  Score=69.00  Aligned_cols=68  Identities=15%  Similarity=0.150  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      +....+++.+|.++..+|++++|+.+|++++++.+.      ...+++++|.++...|++++|+.+++++++..
T Consensus        24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN------HQALRVFYAMVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            446678999999999999999999999999997655      47789999999999999999999999998875

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.97  E-value=5.6e-09  Score=80.19  Aligned_cols=104  Identities=17%  Similarity=0.150  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC---------------C---------------hHHHHHHHHHHHHHHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK---------------D---------------PIEEKKAARGLGASLQ  148 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~---------------~---------------~~~~~~~~~~lg~~~~  148 (210)
                      ++..+|.++..+|++++|+..+++++...+...               +               .+..+.+++++|.++.
T Consensus       132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~  211 (291)
T 3mkr_A          132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM  211 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            456667777777777777777766665432100               0               0002234455555666


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhhc
Q 028333          149 RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER-AARFYDKYISRLE  208 (210)
Q Consensus       149 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~-A~~~~~~al~~~~  208 (210)
                      ..|++++|...|+++++..      |..+.++.++|.++...|+.++ +..++++++++.+
T Consensus       212 ~~g~~~eA~~~l~~al~~~------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P  266 (291)
T 3mkr_A          212 AQGRWEAAEGVLQEALDKD------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR  266 (291)
T ss_dssp             HTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred             HcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence            6666666666666665543      4445555666666666665544 3455555555444

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.96  E-value=6.9e-09  Score=79.68  Aligned_cols=103  Identities=13%  Similarity=0.082  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE------  170 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------  170 (210)
                      ...++.+|.++...|++++|+..+++     +      ....++..+|.++..+|++++|+..++++++.....      
T Consensus       101 ~~~~~~la~~~~~~g~~~~Al~~l~~-----~------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~  169 (291)
T 3mkr_A          101 TTFLLMAASIYFYDQNPDAALRTLHQ-----G------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLA  169 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTT-----C------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhC-----C------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHH
Confidence            34588899999999999999998876     1      134466677777777777777777777766443100      


Q ss_pred             ------------------------CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          171 ------------------------GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       171 ------------------------~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                                              ...|..+.+++++|.++..+|++++|...|+++++..+++
T Consensus       170 ~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~  233 (291)
T 3mkr_A          170 TAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH  233 (291)
T ss_dssp             HHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence                                    0024456678899999999999999999999999876643

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.96  E-value=1e-09  Score=69.97  Aligned_cols=88  Identities=19%  Similarity=0.281  Sum_probs=69.5

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK-AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  179 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  179 (210)
                      +..|..+...|++++|+..|++++++.+.      ... +++++|.++...|++++|+.+|++++++.      +....+
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~   71 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPV------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN------PDSPAL   71 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSS------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTSTHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCcHHH
Confidence            56799999999999999999999996543      456 89999999999999999999999999885      333344


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          180 YGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +.+        +.+.+++.+|+++....+
T Consensus        72 ~~~--------~~~~~a~~~~~~~~~~~p   92 (99)
T 2kc7_A           72 QAR--------KMVMDILNFYNKDMYNQL   92 (99)
T ss_dssp             HHH--------HHHHHHHHHHCCTTHHHH
T ss_pred             HHH--------HHHHHHHHHHHHHhccCc
Confidence            422        566677777776665544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.96  E-value=7.3e-10  Score=78.35  Aligned_cols=91  Identities=18%  Similarity=0.247  Sum_probs=76.1

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 028333          107 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC  186 (210)
Q Consensus       107 ~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~  186 (210)
                      +...|++++|+..+++++...+.      ...++..+|.++...|++++|+.+|++++++.      +....++..+|.+
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~   87 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR------GENAELYAALATV   87 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCS------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------CSCHHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHH
Confidence            45678999999999999986543      46789999999999999999999999999886      5667899999999


Q ss_pred             -HHHcCCH--HHHHHHHHHHHHhhcc
Q 028333          187 -YTELGDL--ERAARFYDKYISRLES  209 (210)
Q Consensus       187 -y~~~g~~--~~A~~~~~~al~~~~~  209 (210)
                       |...|++  ++|+.+++++++..++
T Consensus        88 l~~~~~~~~~~~A~~~~~~al~~~p~  113 (177)
T 2e2e_A           88 LYYQASQHMTAQTRAMIDKALALDSN  113 (177)
T ss_dssp             HHHHTTTCCCHHHHHHHHHHHHHCTT
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhCCC
Confidence             8899999  9999999999987654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.96  E-value=4.6e-10  Score=88.14  Aligned_cols=99  Identities=10%  Similarity=0.109  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      +++++|.++..+++|++|+.+|++++.+.+.      ...+++++|.+|..+|++++|+.+|++++++.      +....
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~------p~~~~  299 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK------NPKALFRRGKAKAELGQMDSARDDFRKAQKYA------PDDKA  299 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHH
Confidence            6899999999999999999999999997554      57789999999999999999999999998876      55667


Q ss_pred             HHHHHHHHH-HHcCCHHHHHHHHHHHHHhhcc
Q 028333          179 AYGAIADCY-TELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       179 ~~~~lg~~y-~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ++..++.+. ...+..+++...|.+++...++
T Consensus       300 a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~  331 (338)
T 2if4_A          300 IRRELRALAEQEKALYQKQKEMYKGIFKGKDE  331 (338)
T ss_dssp             --------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            888899884 4567788899999998877653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.95  E-value=1.6e-08  Score=73.91  Aligned_cols=99  Identities=12%  Similarity=0.034  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISE  168 (210)
Q Consensus        97 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~  168 (210)
                      ..+++++|.+|..    .+++++|+.+|+++.+.    ++....+.+++++|.+|..    .+++++|+.+|+++++.  
T Consensus        85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--  158 (212)
T 3rjv_A           85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--  158 (212)
T ss_dssp             HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--
Confidence            4468899999988    89999999999999873    2222457899999999999    88999999999999765  


Q ss_pred             HhCCCcchHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHh
Q 028333          169 REGEYSGSTEAYGAIADCYTEL-G-----DLERAARFYDKYISR  206 (210)
Q Consensus       169 ~~~~~~~~~~~~~~lg~~y~~~-g-----~~~~A~~~~~~al~~  206 (210)
                           +....+++++|.+|... |     ++++|+.+|+++.+.
T Consensus       159 -----~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          159 -----SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             -----SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             -----CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence                 23346899999999864 3     899999999999875

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.94  E-value=4.2e-09  Score=77.02  Aligned_cols=91  Identities=15%  Similarity=0.121  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhCCC
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG----KYREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~----~~~~A~~~~~~al~~~~~~~~~  173 (210)
                      .+++.+|.+|...+++++|+.+|+++.+.    +    .+.+++++|.+|.. +    ++++|+.+|+++.+        
T Consensus        19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--------   81 (212)
T 3rjv_A           19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQ----G----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--------   81 (212)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHT----T----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----C----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--------
Confidence            35666666666666666666666666542    1    23455566666555 4    56666666666532        


Q ss_pred             cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 028333          174 SGSTEAYGAIADCYTE----LGDLERAARFYDKYIS  205 (210)
Q Consensus       174 ~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~  205 (210)
                      .+.+.+++++|.+|..    .+++++|+.+|+++.+
T Consensus        82 ~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  117 (212)
T 3rjv_A           82 AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR  117 (212)
T ss_dssp             TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence            2233444444544444    4444555554444443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.91  E-value=1.2e-08  Score=66.89  Aligned_cols=85  Identities=22%  Similarity=0.337  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..+++.+|.++...|++++|+.+|++++.+.+.      ...+++++|.++...|++++|+.+|++++++....++    
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----   88 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD----   88 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc----
Confidence            447889999999999999999999999997554      4668899999999999999999999999998765433    


Q ss_pred             HHHHHHHHHHHHHcC
Q 028333          177 TEAYGAIADCYTELG  191 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g  191 (210)
                      ......+...+..++
T Consensus        89 ~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           89 QQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            233444444444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.90  E-value=1.3e-08  Score=66.68  Aligned_cols=82  Identities=27%  Similarity=0.456  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      .+++.+|.++...|++++|+..+++++...+.      ...++..+|.++...|++++|+.+++++++..      +...
T Consensus        44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~  111 (125)
T 1na0_A           44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------PNNA  111 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCcH
Confidence            36788999999999999999999999986443      35678899999999999999999999998875      5567


Q ss_pred             HHHHHHHHHHHHcC
Q 028333          178 EAYGAIADCYTELG  191 (210)
Q Consensus       178 ~~~~~lg~~y~~~g  191 (210)
                      .++..+|.++...|
T Consensus       112 ~~~~~l~~~~~~~g  125 (125)
T 1na0_A          112 EAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcc
Confidence            88999999987654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.89  E-value=3.4e-08  Score=63.93  Aligned_cols=83  Identities=16%  Similarity=0.155  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      +..++.+|..++..++|..|+.+|++|++..+.-. .......++.++|.++..+|++++|+.++++++++.      |.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~------P~   78 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD------PE   78 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------CC
Confidence            34689999999999999999999999999876432 123467889999999999999999999999999885      55


Q ss_pred             hHHHHHHHHH
Q 028333          176 STEAYGAIAD  185 (210)
Q Consensus       176 ~~~~~~~lg~  185 (210)
                      ...+..+++.
T Consensus        79 ~~~~~~n~~~   88 (104)
T 2v5f_A           79 HQRANGNLKY   88 (104)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHhhHHH
Confidence            5666777763

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.89  E-value=2.8e-08  Score=67.73  Aligned_cols=88  Identities=16%  Similarity=0.142  Sum_probs=78.9

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333          103 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus       103 ~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      +|.+|...+.+++|+.+|+++.+.        ..+.+.+++|.+|..    .+++++|+.+|+++.+.        +.+.
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--------g~~~   94 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--------NDQD   94 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--------TCHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--------CCHH
Confidence            899999999999999999999884        246789999999999    89999999999999643        4578


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 028333          179 AYGAIADCYTE----LGDLERAARFYDKYISR  206 (210)
Q Consensus       179 ~~~~lg~~y~~----~g~~~~A~~~~~~al~~  206 (210)
                      +++++|.+|..    .+++++|+.+|++|.+.
T Consensus        95 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           95 GCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            89999999999    99999999999999875

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.89  E-value=4.3e-08  Score=64.77  Aligned_cols=88  Identities=17%  Similarity=0.212  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ..++..+|.++...|++++|+.++++++.+.+.. .+......++.++|.++...|++++|+.+|+++++..      + 
T Consensus        38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~-  110 (131)
T 1elr_A           38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH------R-  110 (131)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------C-
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------C-
Confidence            3467889999999999999999999999998874 3444448899999999999999999999999998864      3 


Q ss_pred             hHHHHHHHHHHHHHcC
Q 028333          176 STEAYGAIADCYTELG  191 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g  191 (210)
                      .......++.+...++
T Consensus       111 ~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A          111 TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            3567777777776554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.88  E-value=2.1e-08  Score=68.44  Aligned_cols=72  Identities=17%  Similarity=0.158  Sum_probs=64.8

Q ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          132 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       132 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..+.....++.+|.++...|++++|+.+|++++...      |....+++.+|.+|...|++++|+.+|++++.+.++
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            344578889999999999999999999999999875      667889999999999999999999999999988664

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.86  E-value=2.1e-07  Score=70.76  Aligned_cols=102  Identities=10%  Similarity=-0.006  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc-hH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-ST  177 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~  177 (210)
                      ..+.+|.+++..++|+.|+.+|+++...    .++.....+++++|.++..+|++++|+.+|++++.-    ...+. ..
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g----~~~P~~~~  208 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKW----PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS----PAGEACAR  208 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGC----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----TTTTTTHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhcc----CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC----CCCccccH
Confidence            7899999999999999999999866442    233334668999999999999999999999999621    11133 67


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .+.+++|.++..+|+.++|...|++++...+
T Consensus       209 da~~~~glaL~~lGr~deA~~~l~~a~a~~P  239 (282)
T 4f3v_A          209 AIAWYLAMARRSQGNESAAVALLEWLQTTHP  239 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            8999999999999999999999999988654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.86  E-value=5e-09  Score=72.75  Aligned_cols=83  Identities=13%  Similarity=0.206  Sum_probs=67.2

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHHHhcCC
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDL----------EKAFTEFKAALELAQNVKD  132 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~A~~~~~~al~l~~~~~~  132 (210)
                      ++.++..+.+++...+.                .+.+++++|.++...+++          ++|+..|++++++.+.   
T Consensus        18 feeA~~~~~~Ai~l~P~----------------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---   78 (158)
T 1zu2_A           18 FEQIRQDAENTYKSNPL----------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---   78 (158)
T ss_dssp             HHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---
Confidence            45555666666665443                345688889999988775          5999999999998766   


Q ss_pred             hHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHH
Q 028333          133 PIEEKKAARGLGASLQRQG-----------KYREAIKYHSMVLQIS  167 (210)
Q Consensus       133 ~~~~~~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~~~  167 (210)
                         ...+++++|.+|..+|           ++++|+.+|++|+++.
T Consensus        79 ---~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           79 ---KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ---cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence               7889999999999875           8999999999999986

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.85  E-value=1.7e-08  Score=77.30  Aligned_cols=105  Identities=14%  Similarity=0.116  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------HHhcC-------------ChHHHHHHHHHHHHHHHH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALEL---------------AQNVK-------------DPIEEKKAARGLGASLQR  149 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l---------------~~~~~-------------~~~~~~~~~~~lg~~~~~  149 (210)
                      .+++.+|.++..+|++++|+..+++++..               .....             ..+....+++++|.++..
T Consensus       152 ~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~  231 (287)
T 3qou_A          152 EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ  231 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            35677777777777777777666654321               11000             112246689999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          150 QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       150 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      .|++++|+..|+++++...    ......++.++|.++..+|+.++|...|++++..
T Consensus       232 ~g~~~~A~~~l~~~l~~~p----~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          232 VGRNEEALELLFGHLRXDL----TAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             TTCHHHHHHHHHHHHHHCT----TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhccc----ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            9999999999999998751    1223788999999999999999999999999864

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.85  E-value=5.1e-08  Score=63.10  Aligned_cols=73  Identities=12%  Similarity=0.111  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE-YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +.-++.+|..++..++|.+|+.+|++|++....... ......++..+|.+|..+|++++|+.++++++++.++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~   78 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence            446789999999999999999999999988754332 2457889999999999999999999999999987664

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.85  E-value=1.2e-08  Score=68.57  Aligned_cols=87  Identities=20%  Similarity=0.162  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..+++.+|.++..+|++++|+..+++++.+.+.      ...+++++|.++...|++++|+.+|++++++...... ...
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~  115 (137)
T 3q49_B           43 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-NFG  115 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CCT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHH-HHH
Confidence            447899999999999999999999999997654      5678999999999999999999999999998865221 123


Q ss_pred             HHHHHHHHHHHHHc
Q 028333          177 TEAYGAIADCYTEL  190 (210)
Q Consensus       177 ~~~~~~lg~~y~~~  190 (210)
                      ..+...+..+....
T Consensus       116 ~~~~~~l~~~~~~~  129 (137)
T 3q49_B          116 DDIPSALRIAKKKR  129 (137)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            44555555555443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.80  E-value=5.9e-09  Score=79.62  Aligned_cols=68  Identities=24%  Similarity=0.256  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      ...+.++|.+|..+|++++|+..+++++++.+.      ...+++++|.++..+|++++|+.+|++++++....
T Consensus        38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            446889999999999999999999999986443      56789999999999999999999999999987643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=5.1e-08  Score=66.08  Aligned_cols=81  Identities=17%  Similarity=0.162  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ...++..+|.++...+++++|+.++++++.+.+.      ...+++++|.++...|++++|+.+|++++++.      +.
T Consensus        64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~  131 (148)
T 2dba_A           64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLE------PK  131 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------SS
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CC
Confidence            3567899999999999999999999999997543      46788999999999999999999999999875      55


Q ss_pred             hHHHHHHHHHHHH
Q 028333          176 STEAYGAIADCYT  188 (210)
Q Consensus       176 ~~~~~~~lg~~y~  188 (210)
                      ...++..++.+..
T Consensus       132 ~~~~~~~l~~~~~  144 (148)
T 2dba_A          132 NKVFQEALRNISG  144 (148)
T ss_dssp             CHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHh
Confidence            5666777776654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.78  E-value=4.6e-08  Score=63.39  Aligned_cols=79  Identities=13%  Similarity=0.135  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..++..+|.++...|++++|+..+++++.+.+.      ...++.++|.++...|++++|..+++++++..      +..
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~  105 (118)
T 1elw_A           38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE------ANN  105 (118)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------TTC
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC------CCC
Confidence            346888999999999999999999999997543      46788999999999999999999999998764      555


Q ss_pred             HHHHHHHHHHH
Q 028333          177 TEAYGAIADCY  187 (210)
Q Consensus       177 ~~~~~~lg~~y  187 (210)
                      ..++..++.+.
T Consensus       106 ~~~~~~l~~~~  116 (118)
T 1elw_A          106 PQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            67777777764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.78  E-value=2.6e-08  Score=76.85  Aligned_cols=96  Identities=15%  Similarity=0.067  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      ++...|..+...|++++|...|+++++..+.      ....+...+..... .|++++|...|+++++..      +...
T Consensus       136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~------p~~~  203 (308)
T 2ond_A          136 VYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY------GDIP  203 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH------TTCH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcH
Confidence            3444455555555555555555555543221      12222233333222 466666666666666654      4456


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      .++.++|..+...|++++|+..|++++..
T Consensus       204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          204 EYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            77788888888888888888888888774

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.77  E-value=4.7e-08  Score=62.08  Aligned_cols=63  Identities=24%  Similarity=0.285  Sum_probs=57.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          141 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE-AYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +..|.++...|++++|+..|+++++..      +.... +++++|.+|..+|++++|+.+|++++++.++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   67 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTE------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD   67 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            568999999999999999999999875      56677 9999999999999999999999999988664

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.75  E-value=2.3e-08  Score=77.09  Aligned_cols=102  Identities=9%  Similarity=-0.002  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK-AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      ...++...|..+...|++++|...|++++++.+.      ... ++.++|.++...|++++|...|+++++..      +
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------p  165 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA------R  165 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST------T
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------C
Confidence            4445566666666666666666666666663221      112 56666666666666666666666665543      2


Q ss_pred             chHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhhcc
Q 028333          175 GSTEAYGAIADCYT-ELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       175 ~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ....++...+.+.. ..|++++|...|+++++..++
T Consensus       166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~  201 (308)
T 2ond_A          166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD  201 (308)
T ss_dssp             CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            22344444444432 256777777777777665543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.74  E-value=7.6e-08  Score=63.95  Aligned_cols=65  Identities=15%  Similarity=-0.018  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          139 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .++.+|..+...|++++|+..|+++++..      |....+++.+|.++...|++++|+.+|++++++.++
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            46789999999999999999999999886      777899999999999999999999999999998664

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.68  E-value=2.5e-07  Score=61.30  Aligned_cols=67  Identities=16%  Similarity=0.124  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      .+++.+|.++...|++++|+.+|++++...+.   ......+++.+|.++...|++++|+.+|+++++..
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPT---HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            46888999999999999999999999997554   22247789999999999999999999999998875

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.65  E-value=4.2e-07  Score=74.47  Aligned_cols=93  Identities=20%  Similarity=0.224  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhC
Q 028333           99 SRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISEREG  171 (210)
Q Consensus        99 ~~~~~g~~~~~~~---~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~  171 (210)
                      +++++|.+|...|   ++++|+.+|+++.+.    +    .+.+++++|.+|..    .+++++|+.+|+++++.     
T Consensus       330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-----  396 (490)
T 2xm6_A          330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----G----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-----  396 (490)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-----
Confidence            4566677776655   677777777777663    1    35678888888888    78888999998888652     


Q ss_pred             CCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 028333          172 EYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISRL  207 (210)
Q Consensus       172 ~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~  207 (210)
                         +.+.+++++|.+|..    .+++++|..+|+++++..
T Consensus       397 ---~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          397 ---GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence               236788899999988    889999999999988765

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.64  E-value=1.6e-06  Score=60.06  Aligned_cols=107  Identities=19%  Similarity=0.184  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  172 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  172 (210)
                      ..++++.-....+..+.|+.|+.....++.+.+...+   +.....++..+|.+++..++|.+|..+|+++++..+....
T Consensus        19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k   98 (167)
T 3ffl_A           19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK   98 (167)
T ss_dssp             --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence            3455677777888999999999999999998876444   5667889999999999999999999999999988864221


Q ss_pred             -------------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333          173 -------------------YSGSTEAYGAIADCYTELGDLERAARFYDK  202 (210)
Q Consensus       173 -------------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~  202 (210)
                                         .....++.+.++.||.+++++++|+..++.
T Consensus        99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A           99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                               122347889999999999999999998764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.62  E-value=1e-07  Score=61.23  Aligned_cols=67  Identities=18%  Similarity=0.224  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..++..+|.++...|++++|+.+|+++++..      +....++.++|.++...|++++|+.+|+++++..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            3467889999999999999999999999875      556788999999999999999999999999987654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.59  E-value=8.9e-07  Score=72.52  Aligned_cols=95  Identities=20%  Similarity=0.272  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 028333           96 ELLSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        96 ~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~  167 (210)
                      ...+++.+|.+|..    .+++++|+.+|+++.+.    +    .+.+.+++|.+|..    .+++++|+.+|+++.+. 
T Consensus        74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-  144 (490)
T 2xm6_A           74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----G----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-  144 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-
Confidence            45677888999988    89999999999998762    1    35678889999988    88999999999988542 


Q ss_pred             HHhCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 028333          168 EREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  206 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~  206 (210)
                             +...+++++|.+|..    .+++++|+++|+++.+.
T Consensus       145 -------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~  180 (490)
T 2xm6_A          145 -------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ  180 (490)
T ss_dssp             -------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             -------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence                   346889999999988    88999999999998764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.47  E-value=1e-06  Score=73.78  Aligned_cols=101  Identities=9%  Similarity=0.008  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVL  164 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al  164 (210)
                      ..+++..+.+....++          +++++..+++++...++      ...++++.+++....+  +++++++++++++
T Consensus        63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK------~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l  136 (567)
T 1dce_A           63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------SYGTWHHRCWLLSRLPEPNWARELELCARFL  136 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence            4468888888888887          99999999999997655      6778999999999999  7799999999999


Q ss_pred             HHHHHhCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Q 028333          165 QISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLES  209 (210)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~  209 (210)
                      +..      +....+|...+.+....| .+++++++++++++..+.
T Consensus       137 ~~d------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~  176 (567)
T 1dce_A          137 EAD------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  176 (567)
T ss_dssp             HHC------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred             hhc------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence            985      667899999999999999 999999999999887654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.38  E-value=1.2e-06  Score=71.35  Aligned_cols=92  Identities=14%  Similarity=0.254  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhC
Q 028333           99 SRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----GKYREAIKYHSMVLQISEREG  171 (210)
Q Consensus        99 ~~~~~g~~~~~~~---~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~~~~~  171 (210)
                      +.+.+|.+|...|   ++++|+.+|+++.+....      .+..++++|.+|...    +++++|+.+|+++.       
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-------  244 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-------  244 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-------
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-------
Confidence            5677888888888   888888888877663221      333445566665443    45666666666553       


Q ss_pred             CCcchHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHH
Q 028333          172 EYSGSTEAYGAIADC-Y--TELGDLERAARFYDKYIS  205 (210)
Q Consensus       172 ~~~~~~~~~~~lg~~-y--~~~g~~~~A~~~~~~al~  205 (210)
                        ++.+.+++++|.+ |  ...+++++|+.+|+++.+
T Consensus       245 --~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~  279 (452)
T 3e4b_A          245 --PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA  279 (452)
T ss_dssp             --GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence              2223455555555 2  345555555555555543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.36  E-value=1.5e-06  Score=70.67  Aligned_cols=91  Identities=12%  Similarity=0.050  Sum_probs=66.1

Q ss_pred             HHHHHHHHH-H--HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHH
Q 028333           98 LSRLKTGKN-F--LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-----KYREAIKYHSMVLQISER  169 (210)
Q Consensus        98 ~~~~~~g~~-~--~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~~~~~  169 (210)
                      .+++++|.+ +  ...+++++|+.+|+++.+.    +    .+.+.+++|.+|. .|     ++++|+.+|+++.     
T Consensus       249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----  314 (452)
T 3e4b_A          249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----  314 (452)
T ss_dssp             HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----
Confidence            456777777 4  4677888888888887752    1    4567788888887 44     8888888888874     


Q ss_pred             hCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 028333          170 EGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  206 (210)
Q Consensus       170 ~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~  206 (210)
                          ++.+.+++++|.+|..    ..++++|..+|+++.+.
T Consensus       315 ----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          315 ----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN  351 (452)
T ss_dssp             ----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred             ----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence                3345788888888876    34888888888888763

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.36  E-value=1.5e-06  Score=71.78  Aligned_cols=98  Identities=13%  Similarity=0.082  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---------------------------
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---------------------------  150 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~---------------------------  150 (210)
                      ..+...|..+...|++++|...|++++++.+.  +   ...++.++|.++...                           
T Consensus       322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~---~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~  396 (530)
T 2ooe_A          322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--D---PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  396 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS--C---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc--C---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence            35666777777777777777777777764221  1   112444444444444                           


Q ss_pred             --------CCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          151 --------GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       151 --------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                              |++++|...|+++++..      |....++..++..+...|+.++|...|++++..
T Consensus       397 a~~~~~~~~~~~~A~~~~e~al~~~------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          397 ALMEYYCSKDKSVAFKIFELGLKKY------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCChhHHHHHHHHHHHHC------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence                    44555555555554443      334455666666666666666666666666654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.36  E-value=3.7e-07  Score=69.45  Aligned_cols=96  Identities=11%  Similarity=-0.047  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      ..+..+..+...|+|++|.+.|...+..     . +... ..+.+|.++...+++++|+.+|+++....    +......
T Consensus       104 l~LayA~~L~~~g~y~eA~~~l~~~~~~-----~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~----d~~~~~~  172 (282)
T 4f3v_A          104 ITMGFAACEAAQGNYADAMEALEAAPVA-----G-SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP----DKFLAGA  172 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTSSCCT-----T-CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS----CHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C-CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC----CcccHHH
Confidence            3566689999999999999999887652     2 2344 88999999999999999999998664331    1111346


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      +++++|.++..+|++++|+.+|++++.
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~  199 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEAND  199 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            899999999999999999999999974

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.35  E-value=1.3e-06  Score=73.21  Aligned_cols=103  Identities=7%  Similarity=-0.042  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCC
Q 028333           96 ELLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISEREGE  172 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~  172 (210)
                      ...++.+.+.+....+  ++++++..+.+++++.++      ...++++.|.+....| .+++++++++++++..     
T Consensus       106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-----  174 (567)
T 1dce_A          106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-----  174 (567)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-----
T ss_pred             CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc------cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-----
Confidence            3457888999999999  779999999999997555      6778999999999999 8999999999998764     


Q ss_pred             CcchHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhhccC
Q 028333          173 YSGSTEAYGAIADCYTEL--------------GDLERAARFYDKYISRLESD  210 (210)
Q Consensus       173 ~~~~~~~~~~lg~~y~~~--------------g~~~~A~~~~~~al~~~~~~  210 (210)
                       +....+|++.|.++..+              +.+++|++++++|+.+.++|
T Consensus       175 -p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~  225 (567)
T 1dce_A          175 -FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND  225 (567)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             -CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC
Confidence             77789999999999885              56899999999999887654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.35  E-value=3.5e-06  Score=57.85  Aligned_cols=70  Identities=14%  Similarity=0.083  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          136 EKKAARGLGASLQRQG---KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ...+.+++|+++.+.+   +.++|+..++..++..    .+....++++++|..|..+|+|++|+.++++++++-|.
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~  103 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ  103 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence            4567777888887766   5567888888876642    11245678888888888888888888888888876553

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.28  E-value=4.7e-06  Score=68.85  Aligned_cols=95  Identities=14%  Similarity=0.121  Sum_probs=77.1

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 028333          107 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC  186 (210)
Q Consensus       107 ~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~  186 (210)
                      +...|++++|...|+++++..+.      ...++..++..+...|++++|...|++++....  .+.......+......
T Consensus       401 ~~~~~~~~~A~~~~e~al~~~p~------~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~--~~~~~~~~lw~~~~~~  472 (530)
T 2ooe_A          401 YYCSKDKSVAFKIFELGLKKYGD------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS--LPPEKSGEIWARFLAF  472 (530)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC--SCGGGCHHHHHHHHHH
T ss_pred             HHHcCChhHHHHHHHHHHHHCCC------CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC--CCHHHHHHHHHHHHHH
Confidence            34588999999999999987654      466788999999999999999999999976531  1112345678888998


Q ss_pred             HHHcCCHHHHHHHHHHHHHhhcc
Q 028333          187 YTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       187 y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ....|+.+.+...+.++++.+++
T Consensus       473 e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          473 ESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCch
Confidence            99999999999999999988764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.28  E-value=8.1e-06  Score=63.03  Aligned_cols=101  Identities=6%  Similarity=-0.114  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL----QRQ---GKYREAIKYHSMVLQIS  167 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~----~~~---~~~~~A~~~~~~al~~~  167 (210)
                      ..+++..|.+....+  ++++++..+.+++.+.++      ...++++.+.+.    ...   +++++++.+++++++..
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk------~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~  140 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK------NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD  140 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT------CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc------cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC
Confidence            446888899999998  999999999999997665      566788888888    666   78999999999998875


Q ss_pred             HHhCCCcchHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhcc
Q 028333          168 EREGEYSGSTEAYGAIADCYTELGDLE--RAARFYDKYISRLES  209 (210)
Q Consensus       168 ~~~~~~~~~~~~~~~lg~~y~~~g~~~--~A~~~~~~al~~~~~  209 (210)
                            +....+++..+.+...+|+++  +++++++++++..+.
T Consensus       141 ------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~  178 (306)
T 3dra_A          141 ------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK  178 (306)
T ss_dssp             ------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT
T ss_pred             ------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC
Confidence                  777899999999999999998  999999999987553

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.27  E-value=5.5e-06  Score=56.16  Aligned_cols=78  Identities=26%  Similarity=0.354  Sum_probs=65.7

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH-
Q 028333          111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE-  189 (210)
Q Consensus       111 ~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-  189 (210)
                      +++++|+.+|+++.+.    ++..    +.  +|.+|...+..++|+.+|+++.+.        +.+.+++++|.+|.. 
T Consensus         9 ~d~~~A~~~~~~aa~~----g~~~----a~--lg~~y~~g~~~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G   70 (138)
T 1klx_A            9 KDLKKAIQYYVKACEL----NEMF----GC--LSLVSNSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENG   70 (138)
T ss_dssp             HHHHHHHHHHHHHHHT----TCTT----HH--HHHHTCTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHcC----CCHh----hh--HHHHHHcCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHcC
Confidence            4789999999999873    2222    22  999999999999999999999653        456899999999999 


Q ss_pred             ---cCCHHHHHHHHHHHHHh
Q 028333          190 ---LGDLERAARFYDKYISR  206 (210)
Q Consensus       190 ---~g~~~~A~~~~~~al~~  206 (210)
                         .+++++|+.+|+++.+.
T Consensus        71 ~g~~~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           71 KYVKKDLRKAAQYYSKACGL   90 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT
T ss_pred             CCCCccHHHHHHHHHHHHcC
Confidence               89999999999999864

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.26  E-value=7.4e-06  Score=51.68  Aligned_cols=65  Identities=14%  Similarity=-0.018  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          137 KKAARGLGASLQRQGK---YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       137 ~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +..+..+|.+++..++   .++|...++++++..      +....++..+|..++..|+|++|+.+|+++++..
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4456666666655444   577777777777764      5666777777777777777777777777776544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.23  E-value=6.3e-06  Score=74.52  Aligned_cols=97  Identities=12%  Similarity=0.163  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE------  170 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------  170 (210)
                      ..+++.+|..+...|++++|+..|.++           .....+..+|.++.+.|+|++|++++.++.+..+..      
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-----------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~L 1173 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETEL 1173 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHH
Confidence            346889999999999999999999886           146678889999999999999999998877544110      


Q ss_pred             -------CC--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333          171 -------GE--------YSGSTEAYGAIADCYTELGDLERAARFYDKYI  204 (210)
Q Consensus       171 -------~~--------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  204 (210)
                             +.        .......+.++|..+...|+|++|..+|.++-
T Consensus      1174 afaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ 1222 (1630)
T 1xi4_A         1174 IFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS 1222 (1630)
T ss_pred             HHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Confidence                   00        01122346679999999999999998888763

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.13  E-value=0.00011  Score=57.20  Aligned_cols=100  Identities=9%  Similarity=0.004  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Q 028333           98 LSRLKTGKNFLRNQD----------LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVLQ  165 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~----------~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~  165 (210)
                      .+++..+.+....+.          +++++.++.+++...++      ...++++.+.+....+  ++++++.++.++++
T Consensus        65 taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~  138 (331)
T 3dss_A           65 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK------SYGTWHHRCWLLSRLPEPNWARELELCARFLE  138 (331)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence            356666666665554          68889999999886555      6778999999999998  48999999999998


Q ss_pred             HHHHhCCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhcc
Q 028333          166 ISEREGEYSGSTEAYGAIADCYTELGD-LERAARFYDKYISRLES  209 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~  209 (210)
                      ..      +.+..++...+.+....|. +++++++++++++..+.
T Consensus       139 ~d------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~  177 (331)
T 3dss_A          139 AD------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  177 (331)
T ss_dssp             HC------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred             hC------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence            75      7778999999999999999 69999999999987654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.10  E-value=0.00014  Score=57.90  Aligned_cols=108  Identities=6%  Similarity=-0.105  Sum_probs=94.7

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCCcchHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-GEYSGSTE  178 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~  178 (210)
                      -..+|..|+..|+|.+|...+.+..+-+.+.++.....+.+..-..+|...+++.++...+.++....... .++...+.
T Consensus       102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~  181 (394)
T 3txn_A          102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA  181 (394)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence            34789999999999999999999999999988888899999999999999999999999999999888765 33334677


Q ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHHhh
Q 028333          179 AYGAIADCYT-ELGDLERAARFYDKYISRL  207 (210)
Q Consensus       179 ~~~~lg~~y~-~~g~~~~A~~~~~~al~~~  207 (210)
                      ....-|..+. ..++|+.|..+|-++.+-+
T Consensus       182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          182 LDLQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            7888889999 8999999999998887544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.07  E-value=4e-05  Score=59.69  Aligned_cols=102  Identities=7%  Similarity=-0.047  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCC
Q 028333           97 LLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~  173 (210)
                      ..++...+.+....+  .+++++.++.+++++.++      ...++++.+.+....|. ++++++++.++++..      
T Consensus       108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr------Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~------  175 (331)
T 3dss_A          108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADER------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN------  175 (331)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC------
Confidence            446888899988888  499999999999997555      67789999999999998 699999999999875      


Q ss_pred             cchHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhhccC
Q 028333          174 SGSTEAYGAIADCYTEL--------------GDLERAARFYDKYISRLESD  210 (210)
Q Consensus       174 ~~~~~~~~~lg~~y~~~--------------g~~~~A~~~~~~al~~~~~~  210 (210)
                      +.+..++++.+.+...+              +.++++++++.+++...++|
T Consensus       176 p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d  226 (331)
T 3dss_A          176 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND  226 (331)
T ss_dssp             SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC
Confidence            77788999999998887              56899999999999987765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.06  E-value=4.9e-05  Score=68.95  Aligned_cols=90  Identities=18%  Similarity=0.250  Sum_probs=72.6

Q ss_pred             HHHHHHhCCCHHHHHHHHHHH--------------------HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333          103 TGKNFLRNQDLEKAFTEFKAA--------------------LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM  162 (210)
Q Consensus       103 ~g~~~~~~~~~~~A~~~~~~a--------------------l~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~  162 (210)
                      +|.++..+|.|++|...|+++                    ++.+++.    ....+++.+|.++...|++++|++.|.+
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv----n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC----NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            588888889988888766543                    3333332    2255889999999999999999999987


Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       163 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +           .....|.++|.++...|++++|+++|..|++..
T Consensus      1131 A-----------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A         1131 A-----------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred             c-----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence            6           235789999999999999999999999988654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.05  E-value=2.5e-05  Score=60.30  Aligned_cols=100  Identities=8%  Similarity=-0.016  Sum_probs=84.3

Q ss_pred             HHHHHHHHH----HhC---CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHH
Q 028333           99 SRLKTGKNF----LRN---QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR--EAIKYHSMVLQISER  169 (210)
Q Consensus        99 ~~~~~g~~~----~~~---~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~--~A~~~~~~al~~~~~  169 (210)
                      +++..+.+.    ...   +++++++..+.++++..++      ...++++.+.+....+.++  +++++++++++..  
T Consensus       105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--  176 (306)
T 3dra_A          105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--  176 (306)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--
Confidence            466667666    555   7899999999999987655      6778999999999999988  9999999998874  


Q ss_pred             hCCCcchHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhhccC
Q 028333          170 EGEYSGSTEAYGAIADCYTELGD------LERAARFYDKYISRLESD  210 (210)
Q Consensus       170 ~~~~~~~~~~~~~lg~~y~~~g~------~~~A~~~~~~al~~~~~~  210 (210)
                          +.+..++++.+.+....++      ++++++++++++...+.|
T Consensus       177 ----~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n  219 (306)
T 3dra_A          177 ----LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN  219 (306)
T ss_dssp             ----TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             ----CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence                6677899999999999887      999999999999877654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.02  E-value=9e-05  Score=50.84  Aligned_cols=67  Identities=19%  Similarity=0.240  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~---~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      ..+.++.|+++....   ++++++..+++.++..    .+....++++++|..|++.|+|++|..++++++++.
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie  101 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  101 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            346889999999988   7779999999988842    233578899999999999999999999999999986

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.96  E-value=4.9e-05  Score=47.84  Aligned_cols=64  Identities=13%  Similarity=0.102  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           98 LSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~---~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      ..+...|.+++..++   .++|...+++++.+.+.      ...++..+|..++..|+|++|+.+++++++..
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~------~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY------NEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            356777888776655   79999999999997665      78899999999999999999999999998764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.93  E-value=0.00038  Score=52.88  Aligned_cols=86  Identities=14%  Similarity=0.052  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHH
Q 028333          113 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ-----GKYREAIKYHSMVLQISEREGEYSG-STEAYGAIADC  186 (210)
Q Consensus       113 ~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~lg~~  186 (210)
                      ...|...+++++++.+    ......++..+|..|...     |+.++|..+|++++++.      ++ ....++..|..
T Consensus       179 l~~A~a~lerAleLDP----~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln------P~~~id~~v~YA~~  248 (301)
T 3u64_A          179 VHAAVMMLERACDLWP----SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC------SAHDPDHHITYADA  248 (301)
T ss_dssp             HHHHHHHHHHHHHHCT----THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC------CTTCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC----CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC------CCCCchHHHHHHHH
Confidence            5677778888888643    344677999999999995     99999999999999996      54 48899999999


Q ss_pred             HHH-cCCHHHHHHHHHHHHHhhc
Q 028333          187 YTE-LGDLERAARFYDKYISRLE  208 (210)
Q Consensus       187 y~~-~g~~~~A~~~~~~al~~~~  208 (210)
                      +.. .|+++.|..++++++...+
T Consensus       249 l~~~~gd~~~a~~~L~kAL~a~p  271 (301)
T 3u64_A          249 LCIPLNNRAGFDEALDRALAIDP  271 (301)
T ss_dssp             TTTTTTCHHHHHHHHHHHHHCCG
T ss_pred             HHHhcCCHHHHHHHHHHHHcCCC
Confidence            988 4999999999999998654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.93  E-value=5.5e-06  Score=66.76  Aligned_cols=94  Identities=12%  Similarity=0.161  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--H-------
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE--R-------  169 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~-------  169 (210)
                      ++..+|..++..|+|++|..+|.++              ..+..+|.++.++|+|++|++.++++.....  .       
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD  189 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            7888999999999999999999865              3678899999999999999999998832210  0       


Q ss_pred             hCC----------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          170 EGE----------YSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       170 ~~~----------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      .++          -...++-...+..+|...|++++|+.++++++..
T Consensus       190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l  236 (449)
T 1b89_A          190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL  236 (449)
T ss_dssp             TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence            000          0011122334557889999999999999998764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.90  E-value=2.8e-05  Score=60.96  Aligned_cols=101  Identities=9%  Similarity=-0.030  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHhCCC
Q 028333           97 LLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ-G-KYREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~-~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~-~-~~~~A~~~~~~al~~~~~~~~~  173 (210)
                      ..+++..+.+....+ .+++++..+.+++...++      ...++++.+.+.... + ++++++.++.++++..      
T Consensus        88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d------  155 (349)
T 3q7a_A           88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK------SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD------  155 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC------
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC------
Confidence            446888899988888 599999999999986554      677899999999887 7 8999999999997653      


Q ss_pred             cchHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhhcc
Q 028333          174 SGSTEAYGAIADCYTELGDLE--------RAARFYDKYISRLES  209 (210)
Q Consensus       174 ~~~~~~~~~lg~~y~~~g~~~--------~A~~~~~~al~~~~~  209 (210)
                      +....++...+.+....|.++        +++++++++++..+.
T Consensus       156 pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~  199 (349)
T 3q7a_A          156 PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR  199 (349)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC
Confidence            677889999999999988887        999999999987553

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.86  E-value=0.00012  Score=57.56  Aligned_cols=83  Identities=13%  Similarity=0.043  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHH
Q 028333          119 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR  198 (210)
Q Consensus       119 ~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~  198 (210)
                      ....++.........+..+.++..++..+...|++++|+..+++++.+.      + ....|..+|.++...|++++|.+
T Consensus       259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln------~-s~~a~~llG~~~~~~G~~~eA~e  331 (372)
T 3ly7_A          259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE------M-SWLNYVLLGKVYEMKGMNREAAD  331 (372)
T ss_dssp             HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------C-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------C-CHHHHHHHHHHHHHCCCHHHHHH
Confidence            3344444333333334466778888888888999999999999999884      2 25678899999999999999999


Q ss_pred             HHHHHHHhhc
Q 028333          199 FYDKYISRLE  208 (210)
Q Consensus       199 ~~~~al~~~~  208 (210)
                      .|++|+.+-+
T Consensus       332 ~~~~AlrL~P  341 (372)
T 3ly7_A          332 AYLTAFNLRP  341 (372)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHhcCC
Confidence            9999998754

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.72  E-value=5.6e-05  Score=59.25  Aligned_cols=102  Identities=10%  Similarity=-0.023  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRN-Q-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR--------EAIKYHSMVLQI  166 (210)
Q Consensus        97 ~~~~~~~g~~~~~~-~-~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~--------~A~~~~~~al~~  166 (210)
                      ..++...+.+.... + ++++++.++.++++..++      ...++++.+.+....+.++        +++++++++++.
T Consensus       123 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk------Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~  196 (349)
T 3q7a_A          123 YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK------NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV  196 (349)
T ss_dssp             HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence            44677788888776 7 899999999999985443      6678899999998888887        999999999887


Q ss_pred             HHHhCCCcchHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhhccC
Q 028333          167 SEREGEYSGSTEAYGAIADCYTELGD-------LERAARFYDKYISRLESD  210 (210)
Q Consensus       167 ~~~~~~~~~~~~~~~~lg~~y~~~g~-------~~~A~~~~~~al~~~~~~  210 (210)
                      .      +.+..++++.+.+...+++       ++++++++++++...++|
T Consensus       197 d------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n  241 (349)
T 3q7a_A          197 D------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN  241 (349)
T ss_dssp             C------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             C------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC
Confidence            5      6778899999999999987       799999999999887654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.70  E-value=0.0005  Score=52.94  Aligned_cols=103  Identities=8%  Similarity=-0.084  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc--ch
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS--GS  176 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~  176 (210)
                      ....+|.++...|++++|+..+.+++...+    ......++.-++.++..+|+.+.|...+++..+..++.  .+  ..
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~----~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~--~~~~d~  175 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDE----AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT--VSGDNE  175 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSC----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH--HHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCC----CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc--cccchH
Confidence            356889999999999999999999866221    12366778888999999999999999998876553100  00  12


Q ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhh
Q 028333          177 TEAYGAIADCYTELG--DLERAARFYDKYISRL  207 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g--~~~~A~~~~~~al~~~  207 (210)
                      ......-|.+....|  ++.+|...|++..+.+
T Consensus       176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~  208 (310)
T 3mv2_B          176 MILNLAESYIKFATNKETATSNFYYYEELSQTF  208 (310)
T ss_dssp             HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence            222333344455445  7778877777766544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.63  E-value=1e-05  Score=65.26  Aligned_cols=81  Identities=16%  Similarity=0.149  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      +...++.+|...|++.++.++++.          +  ...++.++|..+...|.|++|..+|.++              .
T Consensus        96 i~~~Li~~Y~Klg~l~e~e~f~~~----------p--n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~  149 (449)
T 1b89_A           96 VETELIFALAKTNRLAELEEFING----------P--NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------S  149 (449)
T ss_dssp             -------------CHHHHTTTTTC----------C------------------CTTTHHHHHHHT--------------T
T ss_pred             hHHHHHHHHHHhCCHHHHHHHHcC----------C--cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------------h
Confidence            344556666666666666555532          1  2238899999999999999999999977              3


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      .+..+|.|+..+|+++.|++.++++..
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA~~  176 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKANS  176 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHcCC
Confidence            688999999999999999999999843

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.56  E-value=0.001  Score=46.08  Aligned_cols=89  Identities=10%  Similarity=0.159  Sum_probs=66.5

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH-------------------HHHHHHHHHHHHHHHcCCH
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-------------------EEKKAARGLGASLQRQGKY  153 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~-------------------~~~~~~~~lg~~~~~~~~~  153 (210)
                      ....+.++...|..++..++|.+|..+|++++++.+.+....                   ...+..+.++.||...+++
T Consensus        59 p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~  138 (167)
T 3ffl_A           59 PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD  138 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH
Confidence            344677889999999999999999999999999988542211                   1236789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q 028333          154 REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT  188 (210)
Q Consensus       154 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  188 (210)
                      ++|+..++..   .    ...........||+.|.
T Consensus       139 ~~Ai~~Le~I---p----~k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          139 KDAIAILDGI---P----SRQRTPKINMLLANLYK  166 (167)
T ss_dssp             HHHHHHHHTS---C----GGGCCHHHHHHHHHHCC
T ss_pred             HHHHHHHhcC---C----chhcCHHHHHHHHHHhc
Confidence            9999998754   1    11234566677777653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.47  E-value=0.0013  Score=50.67  Aligned_cols=104  Identities=7%  Similarity=-0.048  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--
Q 028333           97 LLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE--  172 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--  172 (210)
                      ....+..|++....|  ++.+|...|++..+   +..+ +.....+.+   ++..+|++++|...++..++.....+.  
T Consensus       176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~  248 (310)
T 3mv2_B          176 MILNLAESYIKFATNKETATSNFYYYEELSQ---TFPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKE  248 (310)
T ss_dssp             HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccc
Confidence            334455566676666  99999999999655   3222 223334444   899999999999999987766433222  


Q ss_pred             --CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          173 --YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       173 --~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                        .+..+.++.|+..+...+|+  +|.++++++.+..++
T Consensus       249 ~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~  285 (310)
T 3mv2_B          249 NAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE  285 (310)
T ss_dssp             HHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence              26678999999999999998  899999999887664

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.41  E-value=0.0074  Score=48.91  Aligned_cols=112  Identities=9%  Similarity=-0.046  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-CCc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-EYS  174 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~  174 (210)
                      .+.....++.+|...|++.+|.........-.....+.......+.....+|...+|+.+|...++++........ ...
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            4556678999999999999999999888765555567777888999999999999999999999999864443332 233


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      .....+...|..+...++|.+|-.+|-.+.+..
T Consensus       216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~  248 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD  248 (445)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence            466788899999999999999999998887643

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.39  E-value=0.00068  Score=44.86  Aligned_cols=70  Identities=13%  Similarity=0.050  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          136 EKKAARGLGASLQRQGKYRE---AIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~~~---A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ...+.+++|+++...++...   ++..++..++..    .....-++++.+|..++++|+|++|+.+++..+++-|.
T Consensus        34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~----~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~  106 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ  106 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence            45567777887777665554   777666654321    11246678888888888888888888888888876553

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.0015  Score=52.69  Aligned_cols=106  Identities=9%  Similarity=0.049  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      +...+|..|+..|+++.|.+.|.+....+...+   .....+..+-.++...+++..+..+..++-......+++.....
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~---~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~  209 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG---AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR  209 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC---SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence            356799999999999999999999888665432   35667888889999999999999999999887766666555666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      .....|..+...++|..|..+|-.+...+
T Consensus       210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          210 YKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            77778888999999999999998776543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.24  E-value=0.00045  Score=52.45  Aligned_cols=76  Identities=14%  Similarity=0.018  Sum_probs=63.5

Q ss_pred             cccchHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 028333           89 IVDPKKEELLSRLKTGKNFLRN-----QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR-QGKYREAIKYHSM  162 (210)
Q Consensus        89 ~~~~~~~~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~  162 (210)
                      .++++-....++..+|..|...     |+.++|..+|++|+.+.+.     ....+++..|..+.. .++++.|..++++
T Consensus       191 eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~-----~~id~~v~YA~~l~~~~gd~~~a~~~L~k  265 (301)
T 3u64_A          191 DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA-----HDPDHHITYADALCIPLNNRAGFDEALDR  265 (301)
T ss_dssp             HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT-----TCSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred             HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC-----CCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            4566766777899999999995     9999999999999998764     126677888998877 5999999999999


Q ss_pred             HHHHHHH
Q 028333          163 VLQISER  169 (210)
Q Consensus       163 al~~~~~  169 (210)
                      ++.....
T Consensus       266 AL~a~p~  272 (301)
T 3u64_A          266 ALAIDPE  272 (301)
T ss_dssp             HHHCCGG
T ss_pred             HHcCCCC
Confidence            9987644

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.00  E-value=0.006  Score=40.58  Aligned_cols=67  Identities=15%  Similarity=0.124  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          137 KKAARGLGASLQRQGKY---REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       137 ~~~~~~lg~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..+.+++|++.....+.   .+++..++..++..     ....-++++.+|..+.++|+|++|..+.+..+++-+
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP  109 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  109 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence            34555566665554433   34666665554421     223556677777777777777777777766665543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.93  E-value=0.0043  Score=48.82  Aligned_cols=106  Identities=10%  Similarity=-0.004  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHHHH
Q 028333           96 ELLSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---G-KYREAIKYHSMVLQISE  168 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~---~-~~~~A~~~~~~al~~~~  168 (210)
                      .+..++..|..+...+   ++.+|+..|++|+++-+.      .+.++..++.+|...   + .......-..++++...
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~------~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE------FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            4455666677666544   468999999999997655      455666666665421   1 11223333444444333


Q ss_pred             HhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          169 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       169 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      .....+..+.++..+|..+...|++++|+.++++|+.+-
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln  307 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE  307 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            333446678889999999998999999999999999874

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.91  E-value=0.017  Score=38.86  Aligned_cols=69  Identities=14%  Similarity=0.119  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          136 EKKAARGLGASLQRQGKY---REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ...+.+++++++....+.   .+++..++..++.     +....-++++.+|..++++|+|++|..+.+..+++-+.
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~  109 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  109 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            455667777777665544   3577777766552     22346678888888888888888888888887776543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.84  E-value=0.13  Score=40.94  Aligned_cols=98  Identities=15%  Similarity=0.087  Sum_probs=80.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 028333          110 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE  189 (210)
Q Consensus       110 ~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  189 (210)
                      -+..+.-++...++++-+..-+-.+.....-..+|..|+..|+|.+|+..+.+..+..++.++.....+++.....+|..
T Consensus        72 ~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~  151 (394)
T 3txn_A           72 DAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA  151 (394)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence            35566667777888887776444444455666899999999999999999999999888777767788899999999999


Q ss_pred             cCCHHHHHHHHHHHHHhh
Q 028333          190 LGDLERAARFYDKYISRL  207 (210)
Q Consensus       190 ~g~~~~A~~~~~~al~~~  207 (210)
                      ++++.++...+.+|....
T Consensus       152 ~~n~~k~k~~l~~a~~~~  169 (394)
T 3txn_A          152 LSNLPKARAALTSARTTA  169 (394)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHhhh
Confidence            999999999999987654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.83  E-value=0.027  Score=37.18  Aligned_cols=66  Identities=17%  Similarity=0.175  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHhCCCHHH---HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           98 LSRLKTGKNFLRNQDLEK---AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~---A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      .+.++.|++.....+...   ++..++..+.-    +++...-+.++.+|..+++.|+|++|..+++..+++.
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e  104 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  104 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            357888999988877665   66666654441    2244677899999999999999999999999999885

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.26  E-value=0.057  Score=46.56  Aligned_cols=60  Identities=17%  Similarity=0.178  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333          138 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY  203 (210)
Q Consensus       138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  203 (210)
                      ..+...+..+...|+|+-|+.+.++|....      |....+|+.|+.||..+|+|+.|+-.++.+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a------PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELA------LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcC------chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            356666788888999999999999999987      888899999999999999999999877654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.11  E-value=0.069  Score=37.23  Aligned_cols=95  Identities=13%  Similarity=0.118  Sum_probs=70.7

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHH---------
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ--ISER---------  169 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~~---------  169 (210)
                      +-++...+..|.|..|+..+.+.        +   .+.+.+.-..||...+||.+|+..+++.+.  +.++         
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~~l--------N---T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~  105 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLHKL--------N---TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE  105 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTC--------C---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred             hhhhhhhhhcchHhHHHHHHHhc--------c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence            34577788889998887766431        1   345677889999999999999999999982  2211         


Q ss_pred             -hCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          170 -EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       170 -~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                       .-+....--.+..+|.+....|+-++|+.+|.....+
T Consensus       106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence             0122234456888999999999999999999887654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.02  E-value=0.12  Score=42.46  Aligned_cols=98  Identities=9%  Similarity=0.037  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      .+..+-..|...|++++|...|++..+    .+-.+ ...+|+.+=..|...|+.++|...|++..+.    +- .....
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~----~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----G~-~Pd~~  176 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKA----FGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVES----EV-VPEEP  176 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH----TTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TC-CCCHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhc----CC-CCCHH
Confidence            456667788899999999999988654    22222 3457788888899999999999999987542    22 33457


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      .|..+-..|...|+.++|.+.+++..+.
T Consensus       177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          177 ELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            8999999999999999999999987653

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.79  E-value=0.18  Score=43.11  Aligned_cols=105  Identities=8%  Similarity=0.019  Sum_probs=66.1

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHh--------cCC--------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQN--------VKD--------PIEEKKAARGLGASLQRQGKYREAIKYHSMV  163 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~--------~~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  163 (210)
                      ++..+......|++++|...|++++.....        ...        ......++...+......|+.+.|...|.+|
T Consensus       381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A  460 (679)
T 4e6h_A          381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC  460 (679)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455677777889999999999999986421        100        0113335556666666778888888888888


Q ss_pred             HHHHHHhCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Q 028333          164 LQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLES  209 (210)
Q Consensus       164 l~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~  209 (210)
                      ++...     ......|...|.+....+ +.+.|...|+++++.+++
T Consensus       461 ~~~~~-----~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~  502 (679)
T 4e6h_A          461 RRLKK-----LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT  502 (679)
T ss_dssp             HHTGG-----GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred             HHhcC-----CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence            76510     112244555555555443 367777777777766553

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.73  E-value=0.037  Score=45.44  Aligned_cols=61  Identities=13%  Similarity=0.119  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ  165 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  165 (210)
                      ++..+|........++.|..+|.+|..+.+.      .+..++.+|.+....|+.-+|+-+|-+++-
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~------~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS------NGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC------CCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            4577999999999999999999999998877      666788999999999999999999988874

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.72  E-value=0.25  Score=32.82  Aligned_cols=66  Identities=12%  Similarity=0.197  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDL---EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~---~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      ..+.++.|++.....+.   .+++..++..+..     ++...-+.++.+|..+++.|+|++|..+.+..+++.
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-----~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e  108 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  108 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            34678888888877654   4667777665542     244567899999999999999999999999998775

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.70  E-value=0.1  Score=44.60  Aligned_cols=99  Identities=12%  Similarity=0.029  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      ++...+......++.+.|...|.+|++..+..     ....+...+..-... ++++.|...|+++++..      +...
T Consensus       436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-----~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~------p~~~  504 (679)
T 4e6h_A          436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-----TPDIYLENAYIEYHISKDTKTACKVLELGLKYF------ATDG  504 (679)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-----CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH------TTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC------CCch
Confidence            34444555666788899999999988742111     123444555555554 45899999999998876      4445


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..+...+......|+.+.|...|++|+...+
T Consensus       505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          505 EYINKYLDFLIYVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence            5666777777788999999999999987654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.43  E-value=0.34  Score=32.59  Aligned_cols=66  Identities=12%  Similarity=0.218  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHhCCCHH---HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLE---KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~---~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      ..+.++.|++.....+.+   +++..++..+.   .  ++...-+.++.+|..++++|+|++|..+.+..+++.
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~---~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e  107 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---E--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  107 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH---H--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---c--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            336788888888777644   56666666555   2  233467789999999999999999999999998875

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.36  E-value=0.076  Score=43.60  Aligned_cols=64  Identities=17%  Similarity=0.209  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      ...+.++|.+.+....++.|..+|.+|..+.      |.....|+.+|.+....|+.-.|.-+|-+++..
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhC------CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            3477899999999999999999999999987      777889999999999999999999999998854

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.97  E-value=1.2  Score=36.04  Aligned_cols=83  Identities=13%  Similarity=-0.000  Sum_probs=66.9

Q ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333           91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      .+....+..+......|...+++.+|...+.++...... ...+......+...|..+...++|.+|-.+|.++.+....
T Consensus       171 ~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          171 MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI  250 (445)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence            445556777788899999999999999999998654444 4455667778889999999999999999999999887765


Q ss_pred             hCCC
Q 028333          170 EGEY  173 (210)
Q Consensus       170 ~~~~  173 (210)
                      .++.
T Consensus       251 ~~d~  254 (445)
T 4b4t_P          251 KSDE  254 (445)
T ss_dssp             HSCH
T ss_pred             cCCH
Confidence            5543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.76  E-value=0.038  Score=45.34  Aligned_cols=77  Identities=10%  Similarity=0.006  Sum_probs=60.3

Q ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          131 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       131 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .|....+..++.+-+.|...+.|++|..+..++. ..............++.+|.++.-+++|.+|.+++..|+...+
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap  301 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP  301 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            4666778888999999999999999999999883 1111111123456788999999999999999999999987554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.74  E-value=0.43  Score=32.51  Aligned_cols=89  Identities=12%  Similarity=0.079  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q 028333          114 EKAFTEFKAALELAQNVK--DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  191 (210)
Q Consensus       114 ~~A~~~~~~al~l~~~~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  191 (210)
                      ++-.+.|++|+...+-..  ....-+..+...+.. ...+|.++|.+.|+.++.+      ....+.++..-|..-..+|
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~------hKkFAKiwi~~AqFEiRqg  108 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN------CKKFAFVHISFAQFELSQG  108 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH------CTTBHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHcc
Confidence            777788888888654322  222223334444433 5568999999999999886      1334888999999999999


Q ss_pred             CHHHHHHHHHHHHHhhcc
Q 028333          192 DLERAARFYDKYISRLES  209 (210)
Q Consensus       192 ~~~~A~~~~~~al~~~~~  209 (210)
                      +..+|.+.+.+|+...+.
T Consensus       109 nl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A          109 NVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             CHHHHHHHHHHHHHTTCB
T ss_pred             cHHHHHHHHHHHhccCCC
Confidence            999999999999987654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.55  E-value=1.4  Score=34.89  Aligned_cols=106  Identities=12%  Similarity=0.052  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh-----c-CChHH----------HHHHHHHHHHHHHHcCCHHHHHHH
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-----V-KDPIE----------EKKAARGLGASLQRQGKYREAIKY  159 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~-----~-~~~~~----------~~~~~~~lg~~~~~~~~~~~A~~~  159 (210)
                      .+......|......++.+.|...+.+|+.+.+-     . ...+.          ...+...++..+...|++.+++..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3444455566566778999999999999887632     1 11111          122455677888899999999999


Q ss_pred             HHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          160 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       160 ~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +...+...      |..-.++..+-.++...|+..+|+..|+++...+
T Consensus       194 l~~~~~~~------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L  235 (388)
T 2ff4_A          194 LEALTFEH------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL  235 (388)
T ss_dssp             HHHHHHHS------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99997764      6667789999999999999999999999987754

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.71  E-value=0.17  Score=40.72  Aligned_cols=88  Identities=16%  Similarity=0.071  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHH
Q 028333          118 TEFKAALELAQN-VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA  196 (210)
Q Consensus       118 ~~~~~al~l~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  196 (210)
                      +.+...+..+.+ .........++..+|..|...|+++.|.+.|.+......   ......+.+..+-.++...+++..+
T Consensus       111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~---~~~~kid~~l~~irl~l~~~d~~~~  187 (429)
T 4b4t_R          111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI---STGAKIDVMLTIARLGFFYNDQLYV  187 (429)
T ss_dssp             HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT---CCCSHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhccHHHH
Confidence            344455554443 222233455788999999999999999999999866542   2345778899999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 028333          197 ARFYDKYISRLE  208 (210)
Q Consensus       197 ~~~~~~al~~~~  208 (210)
                      ..++.++.....
T Consensus       188 ~~~~~ka~~~~~  199 (429)
T 4b4t_R          188 KEKLEAVNSMIE  199 (429)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhh
Confidence            999999977653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.08  E-value=0.31  Score=42.10  Aligned_cols=59  Identities=17%  Similarity=0.095  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV  163 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  163 (210)
                      .+...+......|+|+.|+...++|+..++.      ...+++.|+.+|..+|||+.|+-.+...
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs------eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALD------SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS------CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCch------hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4555677788899999999999999998876      7889999999999999999999877765

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=92.97  E-value=1.6  Score=30.55  Aligned_cols=69  Identities=20%  Similarity=0.199  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HH----------HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALE--LA----------QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL  164 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~--l~----------~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  164 (210)
                      +.+.+..+.||...++|.+|+...++.+.  +-          .-.-|+...--.+..+|.++.+.|+-++|+.++..+.
T Consensus        62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf  141 (242)
T 3kae_A           62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF  141 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence            44677889999999999999999999882  11          1112334445577889999999999999999999885


Q ss_pred             H
Q 028333          165 Q  165 (210)
Q Consensus       165 ~  165 (210)
                      .
T Consensus       142 ~  142 (242)
T 3kae_A          142 G  142 (242)
T ss_dssp             H
T ss_pred             C
Confidence            3

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.48  E-value=1.4  Score=39.44  Aligned_cols=100  Identities=17%  Similarity=0.144  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      .+..+=..|+..|+.++|...|.+.-....+ +-.+ ...+|+-+-..|.+.|+.++|.+.|++..+.    +- .....
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~k-G~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----G~-~PDvv  201 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK-RKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDA----GL-TPDLL  201 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH-HTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC-CCCHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-CCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCcHH
Confidence            4566677899999999999999776543221 1111 3457888888999999999999999988432    23 33456


Q ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 028333          179 AYGAIADCYTELGD-LERAARFYDKYIS  205 (210)
Q Consensus       179 ~~~~lg~~y~~~g~-~~~A~~~~~~al~  205 (210)
                      +|..+=.++...|+ .++|.+.+++..+
T Consensus       202 TYntLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          202 SYAAALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            78888888999887 5788899988765

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.21  E-value=2.1  Score=29.90  Aligned_cols=46  Identities=20%  Similarity=0.062  Sum_probs=31.3

Q ss_pred             HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333          108 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL  164 (210)
Q Consensus       108 ~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  164 (210)
                      ...|+++.|.+..++.       +    ....+..+|......|+++-|..+|+++-
T Consensus        16 L~lg~l~~A~e~a~~l-------~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-------N----DSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HhcCCHHHHHHHHHHh-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            3567777776654432       1    23356778888888888888888887763

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=92.20  E-value=0.99  Score=37.00  Aligned_cols=85  Identities=14%  Similarity=0.128  Sum_probs=63.6

Q ss_pred             CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC
Q 028333          112 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG  191 (210)
Q Consensus       112 ~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  191 (210)
                      ..++|...|++...    .+-.+ ...+|+.+-..|.+.|+.++|...|++..+.    +- .....+|..+=..|...|
T Consensus        85 ~l~~A~~lf~~M~~----~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~-~Pd~~tyn~lI~~~~~~g  154 (501)
T 4g26_A           85 GLSRGFDIFKQMIV----DKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF----GI-QPRLRSYGPALFGFCRKG  154 (501)
T ss_dssp             HHHHHHHHHHHHHH----TTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TC-CCCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHH----hCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCccceehHHHHHHHHCC
Confidence            46777777766543    22222 3457888889999999999999999987432    22 334577888999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 028333          192 DLERAARFYDKYISR  206 (210)
Q Consensus       192 ~~~~A~~~~~~al~~  206 (210)
                      +.++|.+.|++..+.
T Consensus       155 ~~~~A~~l~~~M~~~  169 (501)
T 4g26_A          155 DADKAYEVDAHMVES  169 (501)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999987653

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=91.80  E-value=3.5  Score=31.60  Aligned_cols=102  Identities=12%  Similarity=-0.011  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhCC-Ccch
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-REAIKYHSMVLQISEREGE-YSGS  176 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~~~~~~-~~~~  176 (210)
                      .++.-+..+...|++..|.+...-.++...+.+.+.. ......+..++.....- ..=..+.+++++...+.++ ..+.
T Consensus        55 lL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~-~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gd  133 (312)
T 2wpv_A           55 LISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD-DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGD  133 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS-HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCC
T ss_pred             HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCC
Confidence            4456667788889999888877777777776554442 33455566665443322 2246788888888887655 5678


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHH
Q 028333          177 TEAYGAIADCYTELGDLERAARFYD  201 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~  201 (210)
                      +..+..+|..|.+.|++.+|..+|-
T Consensus       134 p~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          134 PYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            8999999999999999999999884

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.35  E-value=0.4  Score=39.44  Aligned_cols=74  Identities=14%  Similarity=0.029  Sum_probs=58.5

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      |...++..++-+=..|...+.|++|.....++.  .+.. ......+..++++|.++..+++|.+|.+++..|++.+
T Consensus       226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka  300 (523)
T 4b4t_S          226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA  300 (523)
T ss_dssp             SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred             CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            344567677888899999999999999998874  2322 2334457788999999999999999999999997543

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=91.15  E-value=0.61  Score=28.19  Aligned_cols=28  Identities=14%  Similarity=0.158  Sum_probs=21.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333          141 RGLGASLQRQGKYREAIKYHSMVLQISE  168 (210)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~  168 (210)
                      ...|.-.-..|+|++|+.+|.++++...
T Consensus        23 v~~Ave~D~~g~y~eAl~lY~~aie~l~   50 (83)
T 2w2u_A           23 AINAVKADKEGNAEEAITNYKKAIEVLA   50 (83)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            3445556789999999999999988764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=91.04  E-value=3  Score=34.04  Aligned_cols=103  Identities=7%  Similarity=-0.137  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH----------------------------------HHHHHHHHHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI----------------------------------EEKKAARGLG  144 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~----------------------------------~~~~~~~~lg  144 (210)
                      .++..+......|+.+.|...|++|+.. +....-.                                  .....+...+
T Consensus       215 lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~  293 (493)
T 2uy1_A          215 VYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL  293 (493)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence            4566677788899999999999999987 4421100                                  0001222233


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Q 028333          145 ASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRLES  209 (210)
Q Consensus       145 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~~~  209 (210)
                      ......++.+.|...|+++ +.      .......+...|......+ +.+.|...|+.+++.+++
T Consensus       294 ~~~~r~~~~~~AR~i~~~A-~~------~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~  352 (493)
T 2uy1_A          294 NYVLKKRGLELFRKLFIEL-GN------EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD  352 (493)
T ss_dssp             HHHHHHHCHHHHHHHHHHH-TT------SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred             HHHHHcCCHHHHHHHHHHh-hC------CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence            3333466778888888887 21      1223455666666655555 699999999999876543

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=91.00  E-value=0.63  Score=28.09  Aligned_cols=28  Identities=21%  Similarity=0.383  Sum_probs=21.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333          141 RGLGASLQRQGKYREAIKYHSMVLQISE  168 (210)
Q Consensus       141 ~~lg~~~~~~~~~~~A~~~~~~al~~~~  168 (210)
                      ...|.-.=..|+|++|+.+|.++++...
T Consensus        15 v~~Ave~D~~g~y~eAl~lY~~aie~l~   42 (83)
T 2v6y_A           15 AILAVKADKEGKVEDAITYYKKAIEVLS   42 (83)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            3344555789999999999999987764

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=90.95  E-value=4.5  Score=31.31  Aligned_cols=101  Identities=13%  Similarity=0.108  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhC-CCcch
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-REAIKYHSMVLQISEREG-EYSGS  176 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~~~~~-~~~~~  176 (210)
                      .++.-+..+...|++..|.+...-.+++..+.+.+.. ......+..++.....- ..=..+.+++++...+.+ ...+.
T Consensus        57 LL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~-~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gd  135 (336)
T 3lpz_A           57 ILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD-GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGD  135 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCC
Confidence            4455566777777777777766666666655443322 23444555555444321 223567788888887754 35678


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHH
Q 028333          177 TEAYGAIADCYTELGDLERAARFY  200 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~  200 (210)
                      +..+..+|..|.+.+++.+|..+|
T Consensus       136 p~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          136 PELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHH
Confidence            899999999999999999999987

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.33  E-value=1.3  Score=40.29  Aligned_cols=102  Identities=14%  Similarity=0.073  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------------HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALEL-----------------AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS  161 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l-----------------~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~  161 (210)
                      ..+.+|.++...|++++|..+|+++-.-                 .............|..+...+-+.+.++.++...+
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3577999999999999999999876321                 11111111123467788889999999999999999


Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028333          162 MVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD  201 (210)
Q Consensus       162 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~  201 (210)
                      .|++.... ++.......|.++=..+...|+|++|...+.
T Consensus       924 lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          924 LADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             HHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             HHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            99876421 1212244568888888999999999977664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.34  E-value=7.9  Score=33.03  Aligned_cols=26  Identities=19%  Similarity=0.204  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333          138 KAARGLGASLQRQGKYREAIKYHSMV  163 (210)
Q Consensus       138 ~~~~~lg~~~~~~~~~~~A~~~~~~a  163 (210)
                      ..+..+|..+.+.++++.|..+|.++
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            46788999999999999999999886

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.99  E-value=7  Score=30.90  Aligned_cols=102  Identities=7%  Similarity=0.030  Sum_probs=71.3

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028333          105 KNFLRNQDLEKAFTEFKAALELAQNV-----------KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus       105 ~~~~~~~~~~~A~~~~~~al~l~~~~-----------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  173 (210)
                      .+.....+.++|++++++........           ............++..|...++.++|..+.+++-......++.
T Consensus        84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~  163 (393)
T 4b4t_O           84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI  163 (393)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence            34556778899998887654332211           0112234456678999999999999999999998887776655


Q ss_pred             cc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 028333          174 SG--STEAYGAIADCYTELGDLERAARFYDKYISR  206 (210)
Q Consensus       174 ~~--~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  206 (210)
                      +.  ....|...+..|...+++..+..+.-.++..
T Consensus       164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~  198 (393)
T 4b4t_O          164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST  198 (393)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            43  4455666777788889998887776666543

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=88.18  E-value=1.7  Score=26.36  Aligned_cols=38  Identities=16%  Similarity=0.286  Sum_probs=29.5

Q ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 028333           91 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  128 (210)
Q Consensus        91 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~  128 (210)
                      +|....+..+...|.-.-..|+|++|+.+|..+++.+-
T Consensus        10 ~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll   47 (86)
T 4a5x_A           10 DPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLL   47 (86)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            45566676777788888888999999999998888654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=87.83  E-value=3.3  Score=35.43  Aligned_cols=25  Identities=20%  Similarity=0.237  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAA  123 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~a  123 (210)
                      .+..+|..+...++++.|+..|.++
T Consensus       683 ~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          683 KWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            5778999999999999999998875

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=87.57  E-value=2.5  Score=34.54  Aligned_cols=91  Identities=14%  Similarity=0.010  Sum_probs=54.8

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      +...+......++.+.|...|++| . .+.  .   ....+...+..-...+ +.+.|...|+.+++..      +....
T Consensus       289 w~~y~~~~~r~~~~~~AR~i~~~A-~-~~~--~---~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~------~~~~~  355 (493)
T 2uy1_A          289 RINHLNYVLKKRGLELFRKLFIEL-G-NEG--V---GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH------PDSTL  355 (493)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH-T-TSC--C---CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC------TTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-h-CCC--C---ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC------CCCHH
Confidence            333444454567788888888888 2 111  1   1223444455444444 6999999999998754      22233


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q 028333          179 AYGAIADCYTELGDLERAARFYDKY  203 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~a  203 (210)
                      .+...+......|+.+.|...|+++
T Consensus       356 ~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          356 LKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4444455556677777777666654

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=87.00  E-value=1.7  Score=26.76  Aligned_cols=31  Identities=13%  Similarity=0.178  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333          139 AARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      .+...|.-.-..|+|++|+.+|..+++....
T Consensus        17 ~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~   47 (93)
T 1wfd_A           17 AVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3444555567899999999999999887643

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=86.77  E-value=5.2  Score=31.31  Aligned_cols=83  Identities=20%  Similarity=0.100  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           99 SRLKTGKNFLR--NQDLEKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        99 ~~~~~g~~~~~--~~~~~~A~~~~~~al~l~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ++-++|.+--.  ......++..|.+|+..+++. +|.+  ..-|.++|..++..+++.+|+.++-.+-...+..+....
T Consensus       257 ALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H--vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~re  334 (472)
T 3re2_A          257 AIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH--IYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKD  334 (472)
T ss_dssp             HHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGG
T ss_pred             hhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC--ccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCcc
Confidence            44555544322  222334788899999988874 3443  345677888999999999999999999888877665555


Q ss_pred             hHHHHHHH
Q 028333          176 STEAYGAI  183 (210)
Q Consensus       176 ~~~~~~~l  183 (210)
                      ...+|..+
T Consensus       335 DeEIYKEf  342 (472)
T 3re2_A          335 DEEMYKEF  342 (472)
T ss_dssp             GHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}

Probab=85.59  E-value=7.6  Score=30.43  Aligned_cols=87  Identities=13%  Similarity=-0.015  Sum_probs=59.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHH
Q 028333          121 KAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR  198 (210)
Q Consensus       121 ~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~  198 (210)
                      ++.+=+.-..|.-..-+.++.+||.+--...  ....++..|.+++..++..-.. ....-|..+|-+++..+++.+|+.
T Consensus       239 q~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n-~HvYPYtylgGy~yR~~~~reAl~  317 (472)
T 3re2_A          239 QELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSD-HHIYPYTYLGGYYYRKKKYYEAIA  317 (472)
T ss_dssp             HHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTT-CCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhcc-CCccchhhhhhhhhhcchHHHHHH
Confidence            3334344344444445667777777654422  2234899999999998775432 234568889999999999999999


Q ss_pred             HHHHHHHhhc
Q 028333          199 FYDKYISRLE  208 (210)
Q Consensus       199 ~~~~al~~~~  208 (210)
                      ++..|-+..+
T Consensus       318 ~WA~Aa~Vi~  327 (472)
T 3re2_A          318 SWVDAGYVAG  327 (472)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9988876543

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=84.96  E-value=2.1  Score=27.70  Aligned_cols=29  Identities=21%  Similarity=0.244  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333          140 ARGLGASLQRQGKYREAIKYHSMVLQISE  168 (210)
Q Consensus       140 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~  168 (210)
                      +...|.-.-..++|++|+.+|..+++...
T Consensus        21 lv~~Ave~D~ag~y~eAl~lY~~Aie~l~   49 (117)
T 2cpt_A           21 LASKAAQEDKAGNYEEALQLYQHAVQYFL   49 (117)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            34445555789999999999999988764

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=84.88  E-value=2.6  Score=25.36  Aligned_cols=30  Identities=17%  Similarity=0.010  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333          139 AARGLGASLQRQGKYREAIKYHSMVLQISE  168 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  168 (210)
                      .+...|.-.-..|+|++|+.+|..+++...
T Consensus        15 ~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~   44 (85)
T 2v6x_A           15 ELVQKAIDLDTATQYEEAYTAYYNGLDYLM   44 (85)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            344445555789999999999999988753

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.43  E-value=9.5  Score=33.97  Aligned_cols=91  Identities=13%  Similarity=0.062  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------------HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALEL-----------------AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS  161 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l-----------------~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~  161 (210)
                      ..+.+|.+|...|++++|..+|++|-.-                 .............|.++..++-..+-++.++...+
T Consensus       842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~  921 (950)
T 4gq2_M          842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  921 (950)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            4577999999999999999999876421                 11111111233466778888888888888888888


Q ss_pred             HHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q 028333          162 MVLQISEREGEYSGSTEAYGAIADCYTEL  190 (210)
Q Consensus       162 ~al~~~~~~~~~~~~~~~~~~lg~~y~~~  190 (210)
                      .|++... .++.......+.++=..+...
T Consensus       922 lAI~~~~-~dd~~l~~~l~~r~f~~a~a~  949 (950)
T 4gq2_M          922 LADASKE-TDDEDLSIAITHETLKTACAA  949 (950)
T ss_dssp             HHHHTCC-SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcc-cCCccchHHHHHHHHHHHhhC
Confidence            8887653 122223444555554444433

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=82.91  E-value=2.4  Score=25.20  Aligned_cols=33  Identities=9%  Similarity=0.305  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  129 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  129 (210)
                      +.....+|.-|...|+|+.|+.||+.+++...+
T Consensus        12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k   44 (78)
T 2rpa_A           12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNK   44 (78)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            334566788888888888888888888775543

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=82.75  E-value=1.2  Score=26.49  Aligned_cols=28  Identities=25%  Similarity=0.284  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333          139 AARGLGASLQRQGKYREAIKYHSMVLQI  166 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~  166 (210)
                      -...+|+=|...|+|+.|+.||+.+++.
T Consensus        14 e~~k~ARe~Al~GnYdta~~yY~g~~~q   41 (78)
T 2rpa_A           14 ENVKLAREYALLGNYDSAMVYYQGVLDQ   41 (78)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            3456677777777777777777766544

>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*

Probab=82.60  E-value=8.7  Score=30.66  Aligned_cols=69  Identities=14%  Similarity=0.105  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHH
Q 028333          114 EKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA  184 (210)
Q Consensus       114 ~~A~~~~~~al~l~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  184 (210)
                      +.++..|++|+..+++. ++.+  ..-|.++|..++..++|.+|+.++-++-......+........|..+-
T Consensus       281 p~~~~Lf~~AI~~ar~~Y~~~h--vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~  350 (489)
T 4gq4_A          281 PDPLTLYHKGIASAKTYYRDEH--IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFF  350 (489)
T ss_dssp             CCHHHHHHHHHHHHHHHSTTCC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCc--ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHH
Confidence            34677899999988874 3333  445778899999999999999999999888776655444445554443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=82.54  E-value=5.6  Score=27.70  Aligned_cols=47  Identities=13%  Similarity=0.138  Sum_probs=38.2

Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333          148 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS  205 (210)
Q Consensus       148 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  205 (210)
                      ...|+++.|.+..++.           .....|..+|......|+++-|.++|.++-+
T Consensus        16 L~lg~l~~A~e~a~~l-----------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----------NDSITWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HhcCCHHHHHHHHHHh-----------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            4688999888886543           1246899999999999999999999987644

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=82.46  E-value=2.7  Score=25.74  Aligned_cols=31  Identities=26%  Similarity=0.274  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333          136 EKKAARGLGASLQRQGKYREAIKYHSMVLQI  166 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  166 (210)
                      .+-.+...+..+...|.|++|+++.+++...
T Consensus        14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~y   44 (97)
T 2crb_A           14 LAHQQSRRADRLLAAGKYEEAISCHRKATTY   44 (97)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            3444556666667777777777777776444

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=81.64  E-value=15  Score=32.64  Aligned_cols=71  Identities=11%  Similarity=-0.055  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 028333          139 AARGLGASLQRQGKYREAIKYHSMVLQI-----------------SEREGEYSGSTEAYGAIADCYTELGDLERAARFYD  201 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~-----------------~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~  201 (210)
                      ..+-+|.+|...|++++|..+|++|-.-                 .............|..+..++...+-++-+++..+
T Consensus       842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~  921 (950)
T 4gq2_M          842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  921 (950)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            3477999999999999999999987411                 01111112234578899999999999999999999


Q ss_pred             HHHHhhcc
Q 028333          202 KYISRLES  209 (210)
Q Consensus       202 ~al~~~~~  209 (210)
                      .|++....
T Consensus       922 lAI~~~~~  929 (950)
T 4gq2_M          922 LADASKET  929 (950)
T ss_dssp             HHHHTCCS
T ss_pred             HHHhhccc
Confidence            99987653

>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*

Probab=81.61  E-value=11  Score=30.01  Aligned_cols=76  Identities=7%  Similarity=-0.048  Sum_probs=53.7

Q ss_pred             CChHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          131 KDPIEEKKAARGLGASLQRQGK--YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       131 ~~~~~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      |.-...+.++.+||.+--....  .+.++..|++|+...+..-. .....-|..+|-.+...+++.+|+.++..|-+..
T Consensus       256 Ghl~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~-~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi  333 (489)
T 4gq4_A          256 GHLERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYR-DEHIYPYMYLAGYHCRNRNVREALQAWADTATVI  333 (489)
T ss_dssp             TTTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHST-TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cchhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcc-cCcccceeecchHHHHhhhHHHHHHHhhhhhhhh
Confidence            3333345566666666543222  23478899999999887543 2335678889999999999999999998886654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=81.40  E-value=10  Score=29.77  Aligned_cols=73  Identities=11%  Similarity=-0.007  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCCCcc
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE-REGEYSG  175 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~  175 (210)
                      ..+...++..+...|++++++..+.+.+...+-      .-..+..+-.++...|+..+|+..|++.-+... +.+-.|.
T Consensus       171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~------~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~  244 (388)
T 2ff4_A          171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPY------REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  244 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            334566778889999999999999988775332      344677788889999999999999999987654 4555554

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.21  E-value=3.3  Score=26.61  Aligned_cols=34  Identities=18%  Similarity=0.070  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333          136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      .+..+.+.|...=..|+-++|+.+|++++....+
T Consensus        21 ~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~   54 (116)
T 2dl1_A           21 KAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLR   54 (116)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence            3334455555566777777777777777766543

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=81.05  E-value=5.5  Score=23.89  Aligned_cols=35  Identities=20%  Similarity=0.197  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ  128 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~  128 (210)
                      ...+..+...|.-.-..|+|++|+.+|.++++...
T Consensus        16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~   50 (83)
T 2w2u_A           16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEVLA   50 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            34566677788888889999999999999988654

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=80.53  E-value=15  Score=29.46  Aligned_cols=71  Identities=7%  Similarity=-0.033  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          136 EKKAARGLGASLQRQGKY--REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      -+.++.+||.+--...-.  ..++..|.+++..++..-. .....-|..+|-+|+..+++.+|+.++..|-+..
T Consensus       276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~-n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi  348 (550)
T 3u84_A          276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYR-DEHIYPYMYLAGYHCRNRNVREALQAWADTATVI  348 (550)
T ss_dssp             CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHST-TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhc-cCCccceeecchhhhhcchHHHHHHHHHHHHHHH
Confidence            344555555544332211  2377888888887766433 2233557778888888888888888887776554

>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*

Probab=80.30  E-value=8.3  Score=30.83  Aligned_cols=66  Identities=15%  Similarity=0.119  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Q 028333          115 KAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA  182 (210)
Q Consensus       115 ~A~~~~~~al~l~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  182 (210)
                      .++..|.+|+..++.. +|.+  ..-|.++|..++..+++.+|+.++-.+-...+..+......++|..
T Consensus       297 ~~~~L~~~AI~sa~~~Y~n~H--vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKE  363 (550)
T 3u84_A          297 DPLTLYHKGIASAKTYYRDEH--IYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKE  363 (550)
T ss_dssp             CHHHHHHHHHHHHHHHSTTCC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhccCC--ccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence            4678899999988764 3433  3456778889999999999999999998888776665555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-06
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.002
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.004
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.002
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 12/89 (13%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
                   ++E+A   ++ ALE+            A   L + LQ+QGK +EA+ ++   
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAA------AHSNLASVLQQQGKLQEALMHYKEA 365

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGD 192
           ++I           +AY  + +   E+ D
Sbjct: 366 IRI------SPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 14/115 (12%)

Query: 91  DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 150
            P   +    L           + +A   +  AL L     D +        L    + Q
Sbjct: 267 QPHFPDAYCNL--ANALKEKGSVAEAEDCYNTALRLCPTHADSL------NNLANIKREQ 318

Query: 151 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 205
           G   EA++ +   L++      +     A+  +A    + G L+ A   Y + I 
Sbjct: 319 GNIEEAVRLYRKALEV------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 5e-05
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
           L     + G +  A ++   + +          +T     ++  + +   L+R+A F   
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQ------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTL 58

Query: 203 YIS 205
            I 
Sbjct: 59  AIK 61

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 91  DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ 150
           DP   +    L  G      +  ++A   +  AL L+ N             L      Q
Sbjct: 199 DPNFLDAYINL--GNVLKEARIFDRAVAAYLRALSLSPNHAV------VHGNLACVYYEQ 250

Query: 151 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
           G    AI  +   +++           +AY  +A+   E G +  A   Y+  +
Sbjct: 251 GLIDLAIDTYRRAIELQ------PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 8/87 (9%), Positives = 23/87 (26%), Gaps = 12/87 (13%)

Query: 101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYH 160
           ++      +  D E A            +             L +   +  +   +  + 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTG------VLLLLSSIHFQCRRLDRSAHFS 56

Query: 161 SMVLQISEREGEYSGSTEAYGAIADCY 187
           ++ ++            EAY  + + Y
Sbjct: 57  TLAIKQ------NPLLAEAYSNLGNVY 77

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 44.5 bits (103), Expect = 3e-06
 Identities = 16/107 (14%), Positives = 37/107 (34%)

Query: 104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 163
            +  +   + E A    +   E A++++   +  +    L     + G+  +A +     
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317

Query: 164 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 210
           L+++ R G  S       A+A    +L  L            R+  +
Sbjct: 318 LKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILRE 364

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (95), Expect = 3e-05
 Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 108 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 167
           + + + ++A    K ALE             A   LG  L  +G+   ++       Q++
Sbjct: 23  INDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 81

Query: 168 EREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 204
            +   +  +  +    ++     G L+ A    +K  
Sbjct: 82  RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 118

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 1/79 (1%)

Query: 127 AQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 186
            +++++     +            G   EA +   + L+     G +     A   + + 
Sbjct: 2   IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE-LPPGWFYSRIVATSVLGEV 60

Query: 187 YTELGDLERAARFYDKYIS 205
               G+L R+     +   
Sbjct: 61  LHCKGELTRSLALMQQTEQ 79

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 19/167 (11%), Positives = 42/167 (25%), Gaps = 14/167 (8%)

Query: 40  ARQRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLS 99
               R  LQ + +++   +       K+E    + ++    + +         K     +
Sbjct: 29  VWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQA-----KNRANPN 83

Query: 100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKY 159
           R +   N     +    F   +   EL       +  +  +  LG    +Q      +K 
Sbjct: 84  RSEVQANLSLFLEAASGFYT-QLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKP 142

Query: 160 HSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 206
            S                     + D         +A  +Y      
Sbjct: 143 QSSSCSYI--------CQHCLVHLGDIARYRNQTSQAESYYRHAAQL 181

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 9/86 (10%), Positives = 23/86 (26%), Gaps = 8/86 (9%)

Query: 120 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 179
           +    +  +   +P+ +       G    ++G    A+      +Q            EA
Sbjct: 4   YDKGYQFEEE--NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ------DPKHMEA 55

Query: 180 YGAIADCYTELGDLERAARFYDKYIS 205
           +  +     E      A     + + 
Sbjct: 56  WQYLGTTQAENEQELLAISALRRCLE 81

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 138 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-----STEAYGAIADCYTELGD 192
           ++   LG S    G +REA+++    L +  +     G     S   +  +    + LG 
Sbjct: 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 300

Query: 193 LERAARFYDKYISRLE 208
            +       + +S L 
Sbjct: 301 SDAYGAADARDLSTLL 316

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 7/66 (10%), Positives = 16/66 (24%)

Query: 143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 202
                + + +   A           ++ G    +   Y     C+   G+   A    + 
Sbjct: 43  AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102

Query: 203 YISRLE 208
            I    
Sbjct: 103 AIQIFT 108

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 1/96 (1%)

Query: 111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 170
            D  KA   ++ A E     +      K            G+Y EA   +S +++ S   
Sbjct: 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191

Query: 171 GEYSGS-TEAYGAIADCYTELGDLERAARFYDKYIS 205
                S  + +     C     D   AAR   +  S
Sbjct: 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.65
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.64
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.64
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.64
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.62
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.6
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.6
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.57
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.56
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.54
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.53
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.52
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.51
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.49
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.44
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.43
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.37
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.36
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.35
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.32
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.31
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.31
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.28
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.28
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.27
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.23
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.22
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.22
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.2
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.2
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.16
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.16
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.11
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.07
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.01
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.93
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.92
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.87
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.46
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.31
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.29
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.23
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.23
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.18
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.13
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.93
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.86
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.73
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.73
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.51
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.49
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.47
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	90.93
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	90.06
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	89.92
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	86.43
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	82.53

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.1e-16  Score=101.74  Aligned_cols=102  Identities=16%  Similarity=0.261  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      +..+...|..++..|+|++|+..|++++++.+.      .+.++.++|.+|..+|++++|+..+++++++.      |..
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~   70 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------PDW   70 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------chhhhhcccccccccccccccchhhhhHHHhc------cch
Confidence            344677899999999999999999999997655      67899999999999999999999999999886      677


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      +.+|+++|.++..+|++++|+.+|+++++..+++
T Consensus        71 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          71 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN  104 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            8899999999999999999999999999887653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=4.4e-16  Score=111.32  Aligned_cols=101  Identities=11%  Similarity=0.069  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      +..+...|+.++..|+|++|+.+|++++.+.+.      .+.++.++|.+|...|++++|+.+|++++++.      |..
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~------~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~------p~~   71 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELD------GQS   71 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------TTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC------CCc
Confidence            345778899999999999999999999998654      67899999999999999999999999998774      777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ..+|+++|.+|..+|++++|+.+|++|+++.+.
T Consensus        72 ~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            889999999999999999999999999987653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3e-15  Score=99.93  Aligned_cols=107  Identities=18%  Similarity=0.330  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-c
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY-S  174 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~  174 (210)
                      ++.....+|+.++..|+|++|+.+|++++++.+.      ...++.++|.+|..+|+|++|+..+++++++.++.... .
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~   76 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence            4556788999999999999999999999998554      56799999999999999999999999999998764432 3


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..+.+|.++|.++..++++++|+.+|++++...+
T Consensus        77 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            4678999999999999999999999999987643

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.8e-15  Score=103.77  Aligned_cols=103  Identities=16%  Similarity=0.195  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      ..+..+...|+.|+..|+|++|+..|++++++.+.      .+.++.++|.++...|++++|+..|++++++.      +
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~------p   75 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRAIELD------K   75 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh------hhhhhhhhHHHHHhccccchHHHHHHHHHHHc------c
Confidence            35667888999999999999999999999998665      68899999999999999999999999999985      7


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ....++.++|.+|..+|++++|+.+|++++.+.++
T Consensus        76 ~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~  110 (159)
T d1a17a_          76 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH  110 (159)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            77899999999999999999999999999988664

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.64  E-value=7e-15  Score=101.42  Aligned_cols=113  Identities=19%  Similarity=0.184  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  170 (210)
                      +...+..|..++..|+|++|+..|++++++.+...+      ....+.++.++|.+|..+|++++|+..+++++++.++.
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            334455688999999999999999999999988654      23356789999999999999999999999999998765


Q ss_pred             CCCc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          171 GEYS-----GSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       171 ~~~~-----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ....     ....+++++|.+|..+|++++|+.+|++|+++.++
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            4322     34557999999999999999999999999998753

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.2e-15  Score=104.05  Aligned_cols=113  Identities=12%  Similarity=0.172  Sum_probs=96.8

Q ss_pred             chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333           92 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSM  162 (210)
Q Consensus        92 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~---------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~  162 (210)
                      +.-..+..+...|..++..|+|++|+..|.+++.+.+....         ......++.++|.+|..+|+|++|+.++++
T Consensus         8 ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~   87 (170)
T d1p5qa1           8 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK   87 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhh
Confidence            33345666788999999999999999999999998765432         122345788999999999999999999999


Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       163 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ++++.      |..+.+++++|.+|..+|++++|+.+|++++++.+++
T Consensus        88 al~~~------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n  129 (170)
T d1p5qa1          88 ALELD------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  129 (170)
T ss_dssp             HHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             hhhcc------ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence            99985      7778999999999999999999999999999987653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=3.4e-15  Score=110.57  Aligned_cols=104  Identities=15%  Similarity=0.036  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC
Q 028333           94 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus        94 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  173 (210)
                      ...+.+++.+|.+|...|++++|+.+|++++.+.+.      .+.+++++|.+|..+|++++|+.+|++++++.      
T Consensus        34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------  101 (259)
T d1xnfa_          34 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD------  101 (259)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC------CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH------
Confidence            346778899999999999999999999999998654      57789999999999999999999999999985      


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          174 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       174 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      |....++.++|.+|..+|++++|+.+|+++++..++
T Consensus       102 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_         102 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc
Confidence            666789999999999999999999999999987664

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.60  E-value=1.1e-14  Score=100.14  Aligned_cols=112  Identities=21%  Similarity=0.254  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP----------IEEKKAARGLGASLQRQGKYREAIKYHSM  162 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~----------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~  162 (210)
                      ....+..+...|..++..|+|.+|+..|.+++.+.+.....          .....++.|+|.+|..+|++++|+.++++
T Consensus        13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~   92 (153)
T d2fbna1          13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK   92 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhc
Confidence            33456667889999999999999999999999877654321          11244778999999999999999999999


Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          163 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       163 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ++++.      |....+|+++|.+|..+|++++|+.+|++++++.|++
T Consensus        93 al~~~------p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  134 (153)
T d2fbna1          93 VLKID------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  134 (153)
T ss_dssp             HHHHS------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             ccccc------chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            99885      7778999999999999999999999999999987753

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=2.7e-14  Score=108.05  Aligned_cols=136  Identities=15%  Similarity=0.121  Sum_probs=119.7

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      ...+++.|.+++.....          .++....+..+.++|.+|..+|++++|+.+|++++.+.+..++......++.+
T Consensus        53 ~~~A~~~y~kA~~~~~~----------~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          53 LNLAGDSFLKAADYQKK----------AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             THHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----------cCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            45666667777776554          55666677889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-cCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          143 LGASLQR-QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       143 lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +|.+|.. .|++++|+.++++++++....++.+....++.++|.+|..+|++++|+.+|++++...+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~  189 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM  189 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCc
Confidence            9999865 69999999999999999988777777788999999999999999999999999988654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.57  E-value=1.2e-14  Score=94.68  Aligned_cols=94  Identities=18%  Similarity=0.170  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      ..+.+|..+...|++++|+..|++++.+.+.      .+.++.++|.++...|++++|+.+|++++++.      |....
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~   85 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLD------PKDIA   85 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccc------cchhhhhhhhhhhhhhhHHHhhcccccccccc------ccccc
Confidence            3578899999999999999999999997655      67899999999999999999999999999986      77789


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYI  204 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al  204 (210)
                      ++.++|.+|..+|++++|++++++.+
T Consensus        86 a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          86 VHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999999999875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.56  E-value=5.8e-14  Score=97.89  Aligned_cols=110  Identities=11%  Similarity=0.116  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD---------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ  165 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~---------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  165 (210)
                      ..+..+...|+.++..|+|++|+..|.+++.+.+....         ......++.|+|.||..+|++++|+.+++++++
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            34566788999999999999999999999987754322         222445788999999999999999999999998


Q ss_pred             HHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          166 ISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       166 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      +.      |....+++++|.+|..+|++++|+.+|++++++.+++
T Consensus        93 l~------p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n  131 (168)
T d1kt1a1          93 LD------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN  131 (168)
T ss_dssp             HC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             cc------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            85      7778999999999999999999999999999887653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.2e-14  Score=100.31  Aligned_cols=105  Identities=16%  Similarity=0.027  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG------  171 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~------  171 (210)
                      .+++++|.+|..+|++++|+..|++++++.+.      .+.+++++|.+|..+|++++|+..|++++...+...      
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~------~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~  110 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKH------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI  110 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh------hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHH
Confidence            36899999999999999999999999997655      688999999999999999999999999987643211      


Q ss_pred             ----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          172 ----EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       172 ----~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                          .......+++++|.+|..+|++++|.+.+++|+.+.+
T Consensus       111 ~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_         111 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence                0112357899999999999999999999999987643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=1.9e-13  Score=95.28  Aligned_cols=108  Identities=18%  Similarity=0.191  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV----------KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI  166 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~----------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  166 (210)
                      +......|..++..|+|++|+..|.+++.+.+..          ...+....++.++|.+|..+|+|++|+.++++++++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            3345678999999999999999999999876532          123446668899999999999999999999999887


Q ss_pred             HHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          167 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       167 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      .      |..+.+++++|.+|..+|++++|+..|++++++.+++
T Consensus       107 ~------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n  144 (169)
T d1ihga1         107 D------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED  144 (169)
T ss_dssp             C------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             h------hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            5      7788999999999999999999999999999987653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.5e-14  Score=100.64  Aligned_cols=98  Identities=18%  Similarity=0.180  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ++..+++.|..+...|+|++|+..|.++       .++  .+.+++++|.+|..+|++++|+++|++++++.      +.
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i-------~~~--~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld------p~   68 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV-------QDP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRD------KH   68 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS-------SSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc-------CCC--CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh------hh
Confidence            4556788999999999999999998753       222  35678999999999999999999999999986      77


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      .+.+|+++|.+|..+|++++|+..|++|+...+
T Consensus        69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~  101 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  101 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCc
Confidence            789999999999999999999999999997643

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=4.5e-13  Score=101.22  Aligned_cols=113  Identities=12%  Similarity=0.103  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      -+..+...|.+|...++|++|+..|.+++++..+.++++..+.++.++|.+|...|++++|+.++++++++....++...
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~  115 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence            35567889999999999999999999999999999999999999999999999999999999999999999998888777


Q ss_pred             hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhc
Q 028333          176 STEAYGAIADCYTE-LGDLERAARFYDKYISRLE  208 (210)
Q Consensus       176 ~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~  208 (210)
                      ...++.++|.+|.. .|++++|+.+|++++++.+
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999865 6999999999999998764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.2e-13  Score=105.20  Aligned_cols=101  Identities=20%  Similarity=0.191  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           97 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..++..+|.++..+|++++|+.+|++++...+.      .+.++.++|.++...|++++|+.+|++++++.      +..
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~  239 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLWNKLGATLANGNQSEEAVAAYRRALELQ------PGY  239 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred             cccchhhHHHHHHHHHHhhhhcccccccccccc------cccchhhhhhcccccccchhHHHHHHHHHHHh------hcc
Confidence            446788999999999999999999999986544      57789999999999999999999999999874      667


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      +.+++++|.+|..+|++++|+.+|++|+++.++
T Consensus       240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  272 (323)
T d1fcha_         240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRK  272 (323)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence            889999999999999999999999999998664

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.3e-13  Score=83.13  Aligned_cols=88  Identities=15%  Similarity=0.124  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      ..++.+|.+++.+|+|++|+.+|++|+++.+.... ....+.++.++|.++...|++++|+.++++++++.      |..
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~------P~~   79 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD------PEH   79 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC------cCC
Confidence            35889999999999999999999999999886432 34467899999999999999999999999999986      777


Q ss_pred             HHHHHHHHHHHHHcC
Q 028333          177 TEAYGAIADCYTELG  191 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g  191 (210)
                      ..++.|++.+...++
T Consensus        80 ~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          80 QRANGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC
Confidence            889999988776543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.7e-14  Score=92.36  Aligned_cols=99  Identities=14%  Similarity=0.100  Sum_probs=82.3

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333          102 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---GKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus       102 ~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      ++++.+...+++++|.+.|++++.+.+.      .+.+++++|+++...   +++++|+..|+++++..    ..+....
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~------~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~----~~~~~~~   73 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSV------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG----SKEEQRD   73 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCC------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS----CHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc----CCchHHH
Confidence            4567788889999999999999997665      678999999999764   45667999999987643    1133467


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      +++++|.+|..+|++++|+.+|++++++-|++
T Consensus        74 ~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~  105 (122)
T d1nzna_          74 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN  105 (122)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCC
Confidence            99999999999999999999999999987653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.8e-12  Score=87.34  Aligned_cols=130  Identities=19%  Similarity=0.230  Sum_probs=96.5

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      +..++..|.+++...+.......... .........++.++|.+|+.+|+|++|+.++++++.+.+.      .+.++++
T Consensus        29 ~~~Ai~~y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~------~~~a~~~  101 (170)
T d1p5qa1          29 YKQALLQYKKIVSWLEYESSFSNEEA-QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN------NEKGLSR  101 (170)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCCSHHH-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccccchHHH-hhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc------chhhhHH
Confidence            66777788888876654222111110 1112233446678999999999999999999999998554      6789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR-FYDKYIS  205 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~-~~~~al~  205 (210)
                      +|.+|..+|++++|+.+|++++++.      |....+...++.+....++..+... .|.+..+
T Consensus       102 ~g~~~~~~g~~~~A~~~~~~al~l~------P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~  159 (170)
T d1p5qa1         102 RGEAHLAVNDFELARADFQKVLQLY------PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  159 (170)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999985      6677888899999888776665543 3444433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=1.3e-12  Score=96.32  Aligned_cols=125  Identities=18%  Similarity=0.181  Sum_probs=98.9

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      .+.++..|.+++...+.                .+.+++++|.+|..+|++++|+..|++++++.+.      .+.++.+
T Consensus        53 ~~~A~~~~~~al~l~p~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~  110 (259)
T d1xnfa_          53 RALARNDFSQALAIRPD----------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT------YNYAHLN  110 (259)
T ss_dssp             HHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CTHHHHH
T ss_pred             HHHHHHHHHHhhccCCC----------------CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh------hhhhHHH
Confidence            46666777777765543                3456899999999999999999999999997654      5668999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHH------------------------------hCC--------------------
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISER------------------------------EGE--------------------  172 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~------------------------------~~~--------------------  172 (210)
                      +|.++..+|++++|+..|+++++....                              ...                    
T Consensus       111 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (259)
T d1xnfa_         111 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTL  190 (259)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999854311                              000                    


Q ss_pred             --------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          173 --------------YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       173 --------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                                    .+....+++++|.+|..+|++++|+.+|++++...+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  241 (259)
T d1xnfa_         191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH  241 (259)
T ss_dssp             HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence                          1122346677999999999999999999999987654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.35  E-value=3.2e-12  Score=87.50  Aligned_cols=118  Identities=18%  Similarity=0.212  Sum_probs=89.0

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      +..++..|.+++........................++.++|.+|+.+|++++|+.++.+++.+.+.      ...++++
T Consensus        33 y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~------~~ka~~~  106 (153)
T d2fbna1          33 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN------NVKALYK  106 (153)
T ss_dssp             HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch------hhhhhHH
Confidence            5677777888777655422111111111122234556789999999999999999999999997554      5789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCC
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD  192 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~  192 (210)
                      +|.++..+|++++|+.+|++++++.      |....+...++.+...+++
T Consensus       107 ~g~~~~~lg~~~~A~~~~~~al~l~------P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1         107 LGVANMYFGFLEEAKENLYKAASLN------PNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999986      6677788888888766543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.9e-12  Score=99.61  Aligned_cols=100  Identities=17%  Similarity=0.210  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      .++..+|.++...|++++|+..+++++...+.      ....+..+|.++...|++++|+.+|++++++.      |..+
T Consensus       272 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~~~  339 (388)
T d1w3ba_         272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPT------HADSLNNLANIKREQGNIEEAVRLYRKALEVF------PEFA  339 (388)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC------TTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc------cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCH
Confidence            35677888888888888888888887775443      45677888999999999999999999987664      6678


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          178 EAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       178 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .++.++|.+|..+|++++|+.+|++++++.++
T Consensus       340 ~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            89999999999999999999999999987664

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.31  E-value=1.2e-11  Score=85.85  Aligned_cols=131  Identities=17%  Similarity=0.181  Sum_probs=97.1

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      +..++..|.+++.+........... ..........++.++|.+|+.+++|++|+.++++++.+.+.      ...++++
T Consensus        31 ~~~A~~~Y~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~------~~~a~~~  103 (168)
T d1kt1a1          31 YVQAVIQYGKIVSWLEMEYGLSEKE-SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA------NEKGLYR  103 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCHHH-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhh-hhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc------hHHHHHH
Confidence            5667777877777654321111111 12233344556788999999999999999999999998554      6789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHh
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLER-AARFYDKYISR  206 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~-A~~~~~~al~~  206 (210)
                      +|.++..+|++++|+..|++++++.      |....+...++.+....+++.+ ....|.+..+.
T Consensus       104 ~~~~~~~l~~~~~A~~~~~~al~l~------P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~~  162 (168)
T d1kt1a1         104 RGEAQLLMNEFESAKGDFEKVLEVN------PQNKAARLQIFMCQKKAKEHNERDRRTYANMFKK  162 (168)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            9999999999999999999998875      6667888899999888776643 44455544443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.8e-12  Score=97.98  Aligned_cols=99  Identities=9%  Similarity=0.028  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333           98 LSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus        98 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      .++++.|.++...+ ++++|+.++++++.+.++      ...+++++|.++..+|++++|+.++++++++.      +..
T Consensus        78 ~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~------~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d------p~n  145 (315)
T d2h6fa1          78 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------NYQVWHHRRVLVEWLRDPSQELEFIADILNQD------AKN  145 (315)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------TTC
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh------hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh------hcc
Confidence            34566666666554 366666666666665443      45566666666666666666666666666654      445


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          177 TEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..++.++|.++..+|++++|+.+|++++++-+
T Consensus       146 ~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p  177 (315)
T d2h6fa1         146 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV  177 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC
Confidence            56666666666666666666666666666543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.9e-11  Score=75.85  Aligned_cols=74  Identities=12%  Similarity=0.127  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q 028333          137 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD  210 (210)
Q Consensus       137 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~  210 (210)
                      ++.++.+|.+++..|+|++|+.+|++|+++..... .....+.++.++|.+|..+|++++|+.+|++++++.|++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~   79 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH   79 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC
Confidence            45678999999999999999999999999886543 234578899999999999999999999999999987653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.9e-11  Score=92.81  Aligned_cols=97  Identities=20%  Similarity=0.199  Sum_probs=88.3

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA  179 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  179 (210)
                      .+..|..++..|++++|+..|+++++..+.      .+.++.++|.++...|++++|+.+|++++++.      |.....
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~   89 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK------HMEAWQYLGTTQAENEQELLAISALRRCLELK------PDNQTA   89 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc------cccccc
Confidence            477899999999999999999999985444      67899999999999999999999999999885      666789


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          180 YGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       180 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +.++|.+|...|++++|+..+++++...+
T Consensus        90 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~  118 (323)
T d1fcha_          90 LMALAVSFTNESLQRQACEILRDWLRYTP  118 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred             cccccccccccccccccccchhhHHHhcc
Confidence            99999999999999999999999988654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.27  E-value=1.2e-11  Score=85.85  Aligned_cols=93  Identities=16%  Similarity=0.146  Sum_probs=79.4

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE  172 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  172 (210)
                      .+..+..+.++|.+|..+|+|++|+..|++++++.+.      .+.+++++|.+|..+|++++|+..|++++++.     
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~------~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-----  141 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS------NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-----  141 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh------hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-----
Confidence            3445667899999999999999999999999996544      67899999999999999999999999999985     


Q ss_pred             CcchHHHHHHHHHHHHHcCCHHHHH
Q 028333          173 YSGSTEAYGAIADCYTELGDLERAA  197 (210)
Q Consensus       173 ~~~~~~~~~~lg~~y~~~g~~~~A~  197 (210)
                       |....+...++.++..+.+..++.
T Consensus       142 -p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         142 -PEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHHHH
Confidence             566778888999988777665543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2e-11  Score=79.61  Aligned_cols=97  Identities=12%  Similarity=0.183  Sum_probs=81.4

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      ...++..|.+++...+.                ...++.++|.+|..+|++++|+..|.+++.+.+.      .+.++++
T Consensus        19 ~~eAi~~~~~al~~~p~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~   76 (117)
T d1elwa_          19 IDDALQCYSEAIKLDPH----------------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------WGKGYSR   76 (117)
T ss_dssp             HHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCc----------------chhhhhcccccccccccccccchhhhhHHHhccc------hhhHHHH
Confidence            56677777777765543                3557899999999999999999999999997655      6778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY  187 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  187 (210)
                      +|.++..+|++++|+..|+++++..      |....++..++.+.
T Consensus        77 ~g~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~l~~l~  115 (117)
T d1elwa_          77 KAAALEFLNRFEEAKRTYEEGLKHE------ANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC------TTCHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHh
Confidence            9999999999999999999998775      66678888887764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=1.7e-09  Score=81.71  Aligned_cols=135  Identities=11%  Similarity=-0.034  Sum_probs=114.3

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      .+.++..+++++...+.           .+....+.++..+|.++..+|++++|+..|++++.+.+..++......++.+
T Consensus        28 ~~~A~~~~~~aL~~~~~-----------~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   96 (366)
T d1hz4a_          28 PDEAERLAKLALEELPP-----------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   96 (366)
T ss_dssp             HHHHHHHHHHHHHTCCT-----------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcC-----------CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            45566667777665543           3444456788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEY--SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ++.++...|++..|...+.+++.+.......  ......+..+|.++...|+++.|..++.+++...+
T Consensus        97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~  164 (366)
T d1hz4a_          97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  164 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhh
Confidence            9999999999999999999999988765433  34566788999999999999999999999987654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=8e-11  Score=80.74  Aligned_cols=112  Identities=20%  Similarity=0.239  Sum_probs=88.4

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      +..++..|.+++...+.                ...+++++|.++..+|++++|+..|++++++.+.      ...++.+
T Consensus        26 y~~A~~~~~~al~~~p~----------------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~------~~~a~~~   83 (159)
T d1a17a_          26 YENAIKFYSQAIELNPS----------------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK------YIKGYYR   83 (159)
T ss_dssp             HHHHHHHHHHHHHHSTT----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred             HHHHHHHhhhccccchh----------------hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc------chHHHHH
Confidence            56677777777765443                4557899999999999999999999999998655      6788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH--HcCCHHHHHHHHHH
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT--ELGDLERAARFYDK  202 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~--~~g~~~~A~~~~~~  202 (210)
                      +|.++..+|++++|+..+++++++.      |....++..++.+..  ..+.+++|+.....
T Consensus        84 ~g~~~~~~g~~~eA~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~  139 (159)
T d1a17a_          84 RAASNMALGKFRAALRDYETVVKVK------PHDKDAKMKYQECNKIVKQKAFERAIAGDEH  139 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            9999999999999999999999885      555666666666643  44556667654433

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.8e-11  Score=92.13  Aligned_cols=96  Identities=14%  Similarity=0.188  Sum_probs=86.1

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHH
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY  180 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  180 (210)
                      +.+|..++..|+|++|+..|+++++..+.      ...++..+|.+|...|++++|+.+|+++++..      |..+.++
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~a~   70 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPD------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN------PLLAEAY   70 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHH
Confidence            45789999999999999999999986543      56789999999999999999999999999875      6678899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          181 GAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       181 ~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ..+|.+|..+|++++|+..+.++.+..+
T Consensus        71 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~   98 (388)
T d1w3ba_          71 SNLGNVYKERGQLQEAIEHYRHALRLKP   98 (388)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHhhhhcccccccccccccccccc
Confidence            9999999999999999999999987654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.20  E-value=1.2e-11  Score=83.78  Aligned_cols=91  Identities=19%  Similarity=0.208  Sum_probs=77.2

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHhCCCcch
Q 028333          107 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----------GKYREAIKYHSMVLQISEREGEYSGS  176 (210)
Q Consensus       107 ~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~----------~~~~~A~~~~~~al~~~~~~~~~~~~  176 (210)
                      +.+++.|++|+..|++++++.|.      .+.+++++|.++...          +.+++|+..|++++++.      |..
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~------P~~   74 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPL------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID------PKK   74 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------TTC
T ss_pred             HHHHccHHHHHHHHHHHHhhCCc------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc------chh
Confidence            45567799999999999998666      788999999999854          45678999999999885      778


Q ss_pred             HHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhhcc
Q 028333          177 TEAYGAIADCYTELGD-----------LERAARFYDKYISRLES  209 (210)
Q Consensus       177 ~~~~~~lg~~y~~~g~-----------~~~A~~~~~~al~~~~~  209 (210)
                      ..+++++|.+|..+|+           +++|.++|++++++-++
T Consensus        75 ~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~  118 (145)
T d1zu2a1          75 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD  118 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC
Confidence            8999999999988764           68999999999987664

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.20  E-value=1.6e-09  Score=73.92  Aligned_cols=124  Identities=12%  Similarity=0.089  Sum_probs=90.0

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC-----hHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD-----PIEEK  137 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~-----~~~~~  137 (210)
                      ++.++..|.+++...+...   ... ........+.++.++|.+|..+|+|++|+..+.+++.+.++...     .....
T Consensus        25 y~~Ai~~y~~Al~i~~~~~---~~~-~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  100 (156)
T d2hr2a1          25 YDEAAANCRRAMEISHTMP---PEE-AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWI  100 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTSC---TTS-CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhh---hhh-hcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhH
Confidence            5667777777777655410   000 02234445678899999999999999999999999999987533     23456


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHc
Q 028333          138 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTEL  190 (210)
Q Consensus       138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~lg~~y~~~  190 (210)
                      .+++++|.+|..+|++++|+.+|++++++.++..+.. ........++.-+..+
T Consensus       101 ~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~l  154 (156)
T d2hr2a1         101 SAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQL  154 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHHc
Confidence            6899999999999999999999999999988765543 3444445555444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=9.4e-11  Score=89.35  Aligned_cols=105  Identities=12%  Similarity=0.063  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhC
Q 028333           93 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISEREG  171 (210)
Q Consensus        93 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~  171 (210)
                      ++....+...+|.++...+.+++|+..+++++++.+.      ...+++++|.++...+ ++++|+.++++++++.    
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~------~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~----  108 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ----  108 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC------ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH----
Confidence            3445556778899999999999999999999998666      7889999999999876 5999999999999986    


Q ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          172 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       172 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                        +....+++++|.++..+|++++|+.++++++++.++
T Consensus       109 --p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~  144 (315)
T d2h6fa1         109 --PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK  144 (315)
T ss_dssp             --TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             --HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc
Confidence              778899999999999999999999999999998664

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=3.6e-10  Score=85.51  Aligned_cols=112  Identities=13%  Similarity=0.024  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      .+......|.++...|++++|+..++++++..+. .+......++..+|.++...|++++|+.+|++++++....++.+.
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~-~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   89 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY   89 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence            3444555799999999999999999999997665 344456778999999999999999999999999999988887778


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ...++.+++.++...|++..|...+.+++.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~  122 (366)
T d1hz4a_          90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN  122 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            888999999999999999999999999987653

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.8e-10  Score=74.54  Aligned_cols=102  Identities=15%  Similarity=0.120  Sum_probs=77.8

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKA  139 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~l~~~~~~~~~~~~~  139 (210)
                      ...+.+.|++++...+.                ...+.+++|+++...+   ++++|+..|++++..    +..+....+
T Consensus        15 l~~Ae~~Y~~aL~~~p~----------------~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~----~~~~~~~~~   74 (122)
T d1nzna_          15 LLKFEKKFQSEKAAGSV----------------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDY   74 (122)
T ss_dssp             HHHHHHHHHHHHHHSCC----------------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCC----------------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----cCCchHHHH
Confidence            44555668888886554                3457899999998654   456788888888762    223445679


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHc
Q 028333          140 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL  190 (210)
Q Consensus       140 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  190 (210)
                      ++++|.+|...|++++|+.+|++++++.      |....+...++.+...+
T Consensus        75 ~~~Lg~~y~~~g~~~~A~~~~~~aL~~~------P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          75 VFYLAVGNYRLKEYEKALKYVRGLLQTE------PQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999986      66677777777766543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=4.1e-11  Score=84.84  Aligned_cols=87  Identities=21%  Similarity=0.255  Sum_probs=74.1

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG  142 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~  142 (210)
                      +..++..|.+++...+.                ...++.++|.+|...|+|++|+.+|++++++.+.      ...++++
T Consensus        20 ~~~Ai~~~~kal~~~p~----------------~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~------~~~a~~~   77 (201)
T d2c2la1          20 YPEAAACYGRAITRNPL----------------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ------SVKAHFF   77 (201)
T ss_dssp             HHHHHHHHHHHHHHCSC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT------CHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC----------------CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC------cHHHHHH
Confidence            67777778887776543                3557899999999999999999999999986544      6778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 028333          143 LGASLQRQGKYREAIKYHSMVLQISEREG  171 (210)
Q Consensus       143 lg~~~~~~~~~~~A~~~~~~al~~~~~~~  171 (210)
                      +|.+|..+|++++|+.+|++++++.....
T Consensus        78 lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          78 LGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999999999886543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.4e-10  Score=89.40  Aligned_cols=99  Identities=12%  Similarity=0.072  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           96 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        96 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      ....+.++|..+...++++.|+..+.+++.+..        ..++.++|.++..++++++|+.+|++|+++.      |.
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~------P~  184 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--------QHCLVHLGDIARYRNQTSQAESYYRHAAQLV------PS  184 (497)
T ss_dssp             ------------------------CCHHHHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC------CC
Confidence            344678899999999999999999999988643        3578899999999999999999999999986      77


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      ....|+++|.+|...|++.+|+.+|.+|+...+
T Consensus       185 ~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~  217 (497)
T d1ya0a1         185 NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF  217 (497)
T ss_dssp             BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence            789999999999999999999999999997644

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1e-09  Score=72.39  Aligned_cols=68  Identities=16%  Similarity=0.219  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .+..+.++|..++..|+|++|+.+|++++++.      |....++.++|.+|..+|++++|+++|++++++.++
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~   70 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE   70 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc
Confidence            34567789999999999999999999999985      667889999999999999999999999999987653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.93  E-value=1.4e-08  Score=70.74  Aligned_cols=107  Identities=13%  Similarity=0.071  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----CC-----------hHHHHHHHHHHHHHHHHcCCHHHHHH
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-----KD-----------PIEEKKAARGLGASLQRQGKYREAIK  158 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~-----~~-----------~~~~~~~~~~lg~~~~~~~~~~~A~~  158 (210)
                      ..+......|......|++++|+..|.+|+.+.+..     .+           ......++.+++.++...|++++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            456678889999999999999999999999975421     01           11234578899999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          159 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       159 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      +++++++..      |....+|..++.+|...|++.+|+..|+++...+
T Consensus        89 ~~~~al~~~------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L  131 (179)
T d2ff4a2          89 ELEALTFEH------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL  131 (179)
T ss_dssp             HHHHHHHHS------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            999999986      7788999999999999999999999999997654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.92  E-value=1.2e-09  Score=73.65  Aligned_cols=104  Identities=13%  Similarity=0.118  Sum_probs=78.2

Q ss_pred             HHHHHhcccccccccccccCCCCccccccchHHHHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHHHHhcCC
Q 028333           63 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN----------QDLEKAFTEFKAALELAQNVKD  132 (210)
Q Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----------~~~~~A~~~~~~al~l~~~~~~  132 (210)
                      ++.++..|++++...+.                .+.+++++|.++...          +.+++|+..|++++++.+.   
T Consensus        13 fe~A~~~~e~al~~~P~----------------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~---   73 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPL----------------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---   73 (145)
T ss_dssp             HHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHHHHHhhCCc----------------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch---
Confidence            55666677777776554                355688889888754          5568899999999998655   


Q ss_pred             hHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHH
Q 028333          133 PIEEKKAARGLGASLQRQGK-----------YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE  194 (210)
Q Consensus       133 ~~~~~~~~~~lg~~~~~~~~-----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~  194 (210)
                         .+.+++++|.+|..+|+           |++|+.+|++++++.      |.....+..++.+....+.+.
T Consensus        74 ---~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~------P~~~~~~~~L~~~~ka~~~~~  137 (145)
T d1zu2a1          74 ---KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ------PDNTHYLKSLEMTAKAPQLHA  137 (145)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHTHHHHHH
T ss_pred             ---hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC------CCHHHHHHHHHHHHHHHHHHH
Confidence               67789999999987653           688999999998886      667778888888764443333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.87  E-value=7.6e-09  Score=66.43  Aligned_cols=66  Identities=15%  Similarity=-0.012  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          138 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       138 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ...+++|.++...|++++|+..|+++++..      |..+.++..+|.++...|++++|+.+|++++++.++
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   82 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKE------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   82 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccc------cccchhhhhhhhhhhhhhhHHHhhcccccccccccc
Confidence            345789999999999999999999999885      667899999999999999999999999999998765

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.9e-07  Score=74.98  Aligned_cols=82  Identities=11%  Similarity=0.065  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchH
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST  177 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  177 (210)
                      .++.++|.++...+++++|+.+|++|+++.+.      .+.+++++|.++...|++.+|+.+|.+++...      +...
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~------~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~------~~~~  220 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPS------NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK------FPFP  220 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS------BCCH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCH
Confidence            46788999999999999999999999998766      67789999999999999999999999998764      5567


Q ss_pred             HHHHHHHHHHHHcC
Q 028333          178 EAYGAIADCYTELG  191 (210)
Q Consensus       178 ~~~~~lg~~y~~~g  191 (210)
                      .++.+++..+....
T Consensus       221 ~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         221 AASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhh
Confidence            78888888776543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.31  E-value=3e-06  Score=62.25  Aligned_cols=100  Identities=11%  Similarity=0.006  Sum_probs=75.8

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------------
Q 028333          104 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE-------------  170 (210)
Q Consensus       104 g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-------------  170 (210)
                      +...+..|++++|+..++++++..+.      ...++..+|.+++..|++++|+..+++++++..+.             
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a   76 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPK------DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA   76 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            34556788888888888888885444      67788888888888899988888888887654220             


Q ss_pred             ----------------CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          171 ----------------GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       171 ----------------~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                                      ...+.....+...+.++...|++++|...++++.+..+.
T Consensus        77 ~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          77 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence                            012234456677888999999999999999999887653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.29  E-value=1.3e-07  Score=71.81  Aligned_cols=99  Identities=7%  Similarity=-0.115  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcc
Q 028333           98 LSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG  175 (210)
Q Consensus        98 ~~~~~~g~~~~~~~--~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  175 (210)
                      .++..+|.++...+  ++++|+..+.+++.+.++     ........+|.++...+++++|+.++++++++.      +.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-----~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~------p~  176 (334)
T d1dcea1         108 GTWHHRCWLLSRLPEPNWARELELCARFLEADER-----NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN------FS  176 (334)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT------CC
T ss_pred             HHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-----hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC------CC
Confidence            35667777766655  589999999999997443     122234677899999999999999999997774      67


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          176 STEAYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       176 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      ...+++++|.++..+|++++|...+.+++++.
T Consensus       177 ~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~  208 (334)
T d1dcea1         177 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL  208 (334)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH
T ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH
Confidence            78899999999999999887766665555443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=9.4e-06  Score=61.12  Aligned_cols=98  Identities=9%  Similarity=-0.085  Sum_probs=77.4

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333          101 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus       101 ~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      ...+..+...+++++|+.++++++...++      ...+++++|.++...+  ++++|+..++++++..     ......
T Consensus        77 ~~~~~~~~~~~~~~~al~~~~~~l~~~pk------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-----~~~~~~  145 (334)
T d1dcea1          77 ETEKSPEESAALVKAELGFLESCLRVNPK------SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-----ERNFHC  145 (334)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-----TTCHHH
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHhCCC------cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-----chhhhh
Confidence            33445566677799999999999986554      6678888988887766  4899999999999884     233334


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .+..+|.++...+++++|+.+++++++..+.
T Consensus       146 ~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~  176 (334)
T d1dcea1         146 WDYRRFVAAQAAVAPAEELAFTDSLITRNFS  176 (334)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred             hhhHHHHHHHhccccHHHHHHHHHHHHcCCC
Confidence            4678899999999999999999999987654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=1.5e-05  Score=51.03  Aligned_cols=69  Identities=14%  Similarity=0.111  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          136 EKKAARGLGASLQRQG---KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      ...+.++.|++.....   +.++|+..++++++.     +.....++++++|..|..+|+|++|..++++++++-++
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~  105 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  105 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            3567788888887654   456788888888654     22345689999999999999999999999999988664

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.18  E-value=2.3e-05  Score=56.81  Aligned_cols=93  Identities=16%  Similarity=0.253  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCC
Q 028333           98 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEY  173 (210)
Q Consensus        98 ~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~  173 (210)
                      .+++++|..++..+++++|+.+|+++.+.    +    ...+.+++|.+|..    ..++.+|..+++++.+        
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--------   66 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL----K----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--------   66 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--------
Confidence            36889999999999999999999999763    2    35678999999998    7799999999998854        


Q ss_pred             cchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 028333          174 SGSTEAYGAIADCYTE----LGDLERAARFYDKYISR  206 (210)
Q Consensus       174 ~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~  206 (210)
                      ...+.+..++|.++..    .++.+.|..+++++.+.
T Consensus        67 ~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~  103 (265)
T d1ouva_          67 LNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL  103 (265)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             ccccchhhccccccccccccchhhHHHHHHHhhhhhh
Confidence            2345667888888875    56889999999988764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.13  E-value=2.4e-05  Score=51.00  Aligned_cols=90  Identities=17%  Similarity=0.160  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCCc
Q 028333           99 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYS  174 (210)
Q Consensus        99 ~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~  174 (210)
                      +++.+|.  ....++++|+.+|+++.+.    +    .+.+.+.+|..|..    ..|+++|+.+|+++.+.        
T Consensus        27 a~~~l~~--~~~~~~~~a~~~~~~aa~~----g----~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--------   88 (133)
T d1klxa_          27 GCLSLVS--NSQINKQKLFQYLSKACEL----N----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--------   88 (133)
T ss_dssp             HHHHHHT--CTTSCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--------
T ss_pred             hhhhhcc--ccccCHHHHHHHHhhhhcc----c----chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--------
Confidence            3455553  4567899999999998762    2    35678999999987    67899999999999543        


Q ss_pred             chHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 028333          175 GSTEAYGAIADCYTE----LGDLERAARFYDKYISR  206 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~  206 (210)
                      +.+.+.+++|.+|..    ..+.++|..+|++|.+.
T Consensus        89 g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          89 NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            346789999999987    56899999999999764

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.93  E-value=6.1e-05  Score=54.52  Aligned_cols=93  Identities=14%  Similarity=0.146  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHh
Q 028333           99 SRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISERE  170 (210)
Q Consensus        99 ~~~~~g~~~~~----~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~  170 (210)
                      .+..+|..|..    ..+...+..+++++.+    .+    ...+.+++|.+|..    .+++++|+.+|+++.+.    
T Consensus       144 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~----~g----~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~----  211 (265)
T d1ouva_         144 GCTILGSLYDAGRGTPKDLKKALASYDKACD----LK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL----  211 (265)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT----
T ss_pred             hhhhhhhhhccCCCcccccccchhhhhcccc----cc----ccccccchhhhcccCcccccchhhhhhhHhhhhcc----
Confidence            56778888875    5566777777777655    22    35688999999988    77999999999999553    


Q ss_pred             CCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 028333          171 GEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISRL  207 (210)
Q Consensus       171 ~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~  207 (210)
                          +.+.+++++|.+|..    ..++++|.+||++|.+.-
T Consensus       212 ----g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         212 ----ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             ----TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             ----cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence                346789999999986    448999999999998753

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.86  E-value=0.00025  Score=45.21  Aligned_cols=65  Identities=12%  Similarity=0.162  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 028333           98 LSRLKTGKNFLRNQ---DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS  167 (210)
Q Consensus        98 ~~~~~~g~~~~~~~---~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  167 (210)
                      ...++.|++.....   +.++|+..+++.+..     ++....++++++|.+|+++|+|++|..++++++++.
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-----~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            45788888887654   456888888877653     333456899999999999999999999999999986

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=0.00011  Score=54.57  Aligned_cols=96  Identities=15%  Similarity=0.054  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333          100 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL-QRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus       100 ~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      +...+......++++.|...|++++...+.      ....+...+... ...|+.+.|...|+++++..      +....
T Consensus       137 w~~~~~~~~~~~~~~~ar~i~~~al~~~~~------~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~------p~~~~  204 (308)
T d2onda1         137 YIQYMKFARRAEGIKSGRMIFKKAREDART------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY------GDIPE  204 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTSTTC------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH------TTCHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh------hhhHH
Confidence            455566677778888888888888765443      233445555543 34578888888888888765      55567


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRL  207 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~  207 (210)
                      .+...+......|++++|...|++|+...
T Consensus       205 ~w~~y~~~~~~~g~~~~aR~~fe~ai~~~  233 (308)
T d2onda1         205 YVLAYIDYLSHLNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            78888888888899999999999888754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.73  E-value=0.00011  Score=50.46  Aligned_cols=75  Identities=11%  Similarity=0.011  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCCC
Q 028333           95 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE-REGEY  173 (210)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~  173 (210)
                      ....++..++.++...|++++|+..+++++.+.+.      ...++..++.++...|++.+|+..|+++..... +.+-.
T Consensus        65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~------~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~  138 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY------REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  138 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence            34456788999999999999999999999997554      677899999999999999999999999987764 35555


Q ss_pred             cc
Q 028333          174 SG  175 (210)
Q Consensus       174 ~~  175 (210)
                      +.
T Consensus       139 P~  140 (179)
T d2ff4a2         139 PG  140 (179)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=0.002  Score=47.45  Aligned_cols=102  Identities=13%  Similarity=0.103  Sum_probs=77.7

Q ss_pred             HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHH
Q 028333          100 RLKTGKN-FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE  178 (210)
Q Consensus       100 ~~~~g~~-~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  178 (210)
                      +...|.. +...|+.+.|...|++++...+.      ....+...+......|++++|...|++++....  .+......
T Consensus       171 ~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~------~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~--~~~~~~~~  242 (308)
T d2onda1         171 YVTAALMEYYCSKDKSVAFKIFELGLKKYGD------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS--LPPEKSGE  242 (308)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS--SCGGGCHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChHHHHH
Confidence            4445554 44578999999999999997655      456677788888899999999999999976531  11112345


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          179 AYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       179 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      .+..........|+.+.+...++++.+.++.
T Consensus       243 iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~  273 (308)
T d2onda1         243 IWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence            6677777777889999999999999888764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.49  E-value=0.0001  Score=53.88  Aligned_cols=58  Identities=16%  Similarity=0.188  Sum_probs=52.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q 028333          146 SLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES  209 (210)
Q Consensus       146 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  209 (210)
                      -.+..|++++|+..++++++..      |....++..+|.+|...|++++|+..|++++++.++
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~------P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~   62 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKAS------PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE   62 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            3456899999999999998875      888999999999999999999999999999987654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.47  E-value=0.00019  Score=46.50  Aligned_cols=78  Identities=26%  Similarity=0.319  Sum_probs=60.3

Q ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH-
Q 028333          111 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE-  189 (210)
Q Consensus       111 ~~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-  189 (210)
                      .|+++|+.+|+++.+.    ++    ..+.+++|.  ....++++|+.+++++.+        .+.+.+.+.+|.+|.. 
T Consensus         7 kd~~~A~~~~~kaa~~----g~----~~a~~~l~~--~~~~~~~~a~~~~~~aa~--------~g~~~a~~~Lg~~y~~g   68 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL----NE----MFGCLSLVS--NSQINKQKLFQYLSKACE--------LNSGNGCRFLGDFYENG   68 (133)
T ss_dssp             HHHHHHHHHHHHHHHT----TC----TTHHHHHHT--CTTSCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHC----CC----hhhhhhhcc--ccccCHHHHHHHHhhhhc--------ccchhhhhhHHHhhhhc
Confidence            4789999999998763    22    234555654  456789999999999854        3456889999999987 


Q ss_pred             ---cCCHHHHHHHHHHHHHh
Q 028333          190 ---LGDLERAARFYDKYISR  206 (210)
Q Consensus       190 ---~g~~~~A~~~~~~al~~  206 (210)
                         ..++++|.++|+++.+.
T Consensus        69 ~~~~~d~~~A~~~~~~aa~~   88 (133)
T d1klxa_          69 KYVKKDLRKAAQYYSKACGL   88 (133)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT
T ss_pred             cccchhhHHHHHHHhhhhcc
Confidence               56899999999999764

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.93  E-value=0.22  Score=29.41  Aligned_cols=34  Identities=12%  Similarity=0.142  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 028333          136 EKKAARGLGASLQRQGKYREAIKYHSMVLQISER  169 (210)
Q Consensus       136 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  169 (210)
                      .+..+...|.-+-..|+|++|+.+|.++++....
T Consensus        14 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_          14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3445556666777999999999999999887643

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.06  E-value=0.91  Score=25.68  Aligned_cols=30  Identities=27%  Similarity=0.290  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333          139 AARGLGASLQRQGKYREAIKYHSMVLQISE  168 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  168 (210)
                      .+..-+.-+...|.|++|+++.++|.....
T Consensus        10 ~~~RrAer~l~~~rydeAIech~kA~~yl~   39 (83)
T d2crba1          10 QQSRRADRLLAAGKYEEAISCHRKATTYLS   39 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            333444455555555555555555544443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.92  E-value=0.25  Score=28.07  Aligned_cols=34  Identities=21%  Similarity=0.107  Sum_probs=29.0

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 028333          175 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE  208 (210)
Q Consensus       175 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~  208 (210)
                      +.+..+-..|.-+...|+|++|++++++|.+.+.
T Consensus         6 N~AH~~~RrAer~l~~~rydeAIech~kA~~yl~   39 (83)
T d2crba1           6 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLS   39 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3567788899999999999999999999987653

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.43  E-value=0.32  Score=27.46  Aligned_cols=30  Identities=20%  Similarity=0.233  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 028333          139 AARGLGASLQRQGKYREAIKYHSMVLQISE  168 (210)
Q Consensus       139 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  168 (210)
                      .+..-|.-.=..|+|++|+.+|.++++...
T Consensus        13 ~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~   42 (77)
T d1wr0a1          13 DLASKAAQEDKAGNYEEALQLYQHAVQYFL   42 (77)
T ss_dssp             HHHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            344455556688999999999998887653

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.53  E-value=3  Score=24.13  Aligned_cols=40  Identities=10%  Similarity=0.223  Sum_probs=34.1

Q ss_pred             ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 028333           90 VDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN  129 (210)
Q Consensus        90 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~l~~~  129 (210)
                      .++....+..+...|.-+-..|+|++|+.+|.++++++-.
T Consensus         8 ~~~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_           8 QDSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4556667778899999999999999999999999987654