Citrus Sinensis ID: 028357

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEV
Secondary Structure (PSIPRED)
ccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHccccEEEEEccccEEEEEEEcccccccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccEcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccHHHHccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEEccEEEEEEEEcccccccEEEEEc
Coil and Loop (DISEMBL)
mdrrdglalpgsasfymqrgmtgsgsgtqpslhgspgihplsnpslqfqsniggstigstlsvdpssaisphgvnvtasasmpqsepvkrkrgrprkygpdgsvslalspsvsthpgtisptqkrgrgrppgtgrkqQVSSlgeslsgsagmgftphVITVAVGEDIAMKLLSFSQQGPRAICVLSangaistatlrqpsssggsvtyev
Flexible Loop (DISEMBL)
mdrrdglalpgSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGvnvtasasmpqsepvkrkrgrprkygpdgsvslalspsvsthpgtisptqkrgrgrppgTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAistatlrqpsssggsvtyev
Low Complexity Region (SEG)
MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVTASASMPQSEpvkrkrgrprkygpdgSVSLALSPSVSTHPGTISptqkrgrgrppgtgrkqqVsslgeslsgsAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEV
Disordered region (IsUnstruct)
*******************************************************************************************************************************************************MGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAI*******************
Disordered Region (DISOPRED)
****************************************************************************************************************************************************SAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG**VTYEV
Disordered Region (DISEMBL)
********LPGSASFYMQRGM*************SPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVT**************************VSLALSP*************************************GSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATL**************
Disordered Region (DISPRO)
*********P***SFY***GMTGSGSGTQPSLHGSPGIHPLSNP**********************************************************SVSL******************************Q*VSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGSTLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.347	0.234	0.368	9e-05

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 47.0 bits (110), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 124 KRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAIC 183
           KR RGRPPG+  K +   +    S +A      HV+ V+ G DI   + +++++  R + 
Sbjct: 86  KRPRGRPPGSKNKAKPPIIVTRDSPNA---LRSHVLEVSPGADIVESVSTYARRRGRGVS 142

Query: 184 VLSANGAISTATLRQP 199
           VL  NG +S  TLRQP
Sbjct: 143 VLGGNGTVSNVTLRQP 158

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
255541558	340	DNA binding protein, putative [Ricinus c	0.995	0.614	0.780	3e-88
133907524	340	AT-hook DNA-binding protein [Gossypium h	0.995	0.614	0.738	3e-84
225454180	345	PREDICTED: uncharacterized protein LOC10	0.995	0.605	0.771	4e-81
224130232	336	predicted protein [Populus trichocarpa]	0.971	0.607	0.719	4e-75
358249184	341	uncharacterized protein LOC100814615 [Gl	0.971	0.598	0.693	2e-72
224067876	328	predicted protein [Populus trichocarpa]	0.942	0.603	0.669	4e-70
449518609	334	PREDICTED: uncharacterized LOC101203138	0.961	0.604	0.644	2e-69
449441474	334	PREDICTED: uncharacterized protein LOC10	0.961	0.604	0.644	2e-69
356568374	342	PREDICTED: uncharacterized protein LOC10	0.971	0.596	0.669	3e-69
356520420	340	PREDICTED: uncharacterized protein LOC10	0.985	0.608	0.655	6e-68

>gi|255541558|ref|XP_002511843.1| DNA binding protein, putative [Ricinus communis] gi|223549023|gb|EEF50512.1| DNA binding protein, putative [Ricinus communis]

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 164/210 (78%), Positives = 190/210 (90%), Gaps = 1/210 (0%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD +A+ GSASFYMQRGMTGSGSGTQ  L+ S GI+PL++ ++ FQSN+G +TIGST
Sbjct: 1   MDRRDAMAMSGSASFYMQRGMTGSGSGTQSGLNVSSGINPLTSTNVSFQSNVGANTIGST 60

Query: 61  LSVDPSSAISPHGVNVTASASMPQ-SEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTI 119
           L ++ S+AI PHGVNV AS+ MP   EPVKRKRGRPRKYGPDG+VSLALSPS+STHPGTI
Sbjct: 61  LPLETSTAIPPHGVNVGASSLMPPPGEPVKRKRGRPRKYGPDGTVSLALSPSLSTHPGTI 120

Query: 120 SPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGP 179
           +PTQKRGRGRPPGTGRKQQ++SLGE LSGSAGMGFTPH+IT+AVGEDIA K++SFSQQGP
Sbjct: 121 TPTQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGP 180

Query: 180 RAICVLSANGAISTATLRQPSSSGGSVTYE 209
           RAIC+LSANGA+ST TLRQPS+SGGSVTYE
Sbjct: 181 RAICILSANGAVSTVTLRQPSTSGGSVTYE 210

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133907524|gb|ABO42262.1| AT-hook DNA-binding protein [Gossypium hirsutum]

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 155/210 (73%), Positives = 185/210 (88%), Gaps = 1/210 (0%)

Query: 1   MDRRDGLALPGSASFYMQ-RGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGS 59
           MDRRD +AL GSAS+YMQ RG+TGSGSGTQ  +HGSPGIHPLS+P++Q+QS+I  +T+G+
Sbjct: 1   MDRRDAMALSGSASYYMQQRGITGSGSGTQSGVHGSPGIHPLSSPNVQYQSSISATTMGA 60

Query: 60  TLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTI 119
           TL V+P S I+PH VNV    ++   E VKRKRGRPRKYGPDG+VSLAL+P+ +THPGTI
Sbjct: 61  TLPVEPLSGITPHNVNVGTPPAVQPGETVKRKRGRPRKYGPDGTVSLALTPASATHPGTI 120

Query: 120 SPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGP 179
           +P QKRGRGRPPGTGRKQQ+SSLGE LSGSAGMGFTPHVIT+A+GEDIA KL+SFSQQGP
Sbjct: 121 TPIQKRGRGRPPGTGRKQQLSSLGELLSGSAGMGFTPHVITIAIGEDIATKLMSFSQQGP 180

Query: 180 RAICVLSANGAISTATLRQPSSSGGSVTYE 209
           R +C+LSANGA+ST TLR+PSSSGG+VTYE
Sbjct: 181 REVCILSANGAVSTVTLRKPSSSGGTVTYE 210

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454180|ref|XP_002272142.1| PREDICTED: uncharacterized protein LOC100265498 [Vitis vinifera] gi|297745264|emb|CBI40344.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (783), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 165/214 (77%), Positives = 187/214 (87%), Gaps = 5/214 (2%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGT--QPSLHGSPGIHPLSNPSLQFQSNIGGS-TI 57
           MDRRD +A+PGS S+YMQRGM GSGSG+  QP LHGSPGI  LSNPS+ FQ NIGG  ++
Sbjct: 1   MDRRDAMAMPGSGSYYMQRGMAGSGSGSGPQPGLHGSPGIRSLSNPSMPFQPNIGGGGSM 60

Query: 58  GSTLSVDPSSAISPHGVNVTA-SASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHP 116
           GSTL V+PSS IS HGVNV A S  +P SEPVKRKRGRPRKYGPDG+VSLALSPS +T P
Sbjct: 61  GSTLPVEPSSVISTHGVNVGAPSTLLPPSEPVKRKRGRPRKYGPDGTVSLALSPSSATSP 120

Query: 117 GTISP-TQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFS 175
           GT++  TQKRGRGRPPGTGRKQQ++SLGE LSGSAGMGFTPHVITVAVGED+A K++SFS
Sbjct: 121 GTLTASTQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHVITVAVGEDVATKIMSFS 180

Query: 176 QQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
           QQGPRAIC+LSANGA+ST TLRQPS+SGG+VTYE
Sbjct: 181 QQGPRAICILSANGAVSTVTLRQPSTSGGTVTYE 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130232|ref|XP_002320785.1| predicted protein [Populus trichocarpa] gi|222861558|gb|EEE99100.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 151/210 (71%), Positives = 180/210 (85%), Gaps = 6/210 (2%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD +A+ GSASFYM RG+T SGS     ++ S  I+ LSN ++ FQ NIG +T+GST
Sbjct: 1   MDRRDAMAISGSASFYMHRGITSSGS-----MNVSSNINTLSNTNVAFQPNIGANTMGST 55

Query: 61  LSVDPSSAISPHGVNVTASASMPQS-EPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTI 119
           L ++   AISPHGVNV   ++MP S EPVKRKRGRPRKYGPDG+VSLALS S+STHPGTI
Sbjct: 56  LPMEHPVAISPHGVNVGVPSTMPPSGEPVKRKRGRPRKYGPDGAVSLALSSSLSTHPGTI 115

Query: 120 SPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGP 179
           +P+QKRGRGRPPGTGRKQQ++SLGE LSGSAGMGFTPH+IT+AVGEDIA K++SFSQQGP
Sbjct: 116 TPSQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGP 175

Query: 180 RAICVLSANGAISTATLRQPSSSGGSVTYE 209
           RA+C+LSANGA+ST TLRQPS+SGG+VTYE
Sbjct: 176 RAVCILSANGAVSTVTLRQPSTSGGTVTYE 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249184|ref|NP_001239751.1| uncharacterized protein LOC100814615 [Glycine max] gi|255636132|gb|ACU18409.1| unknown [Glycine max]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/212 (69%), Positives = 174/212 (82%), Gaps = 8/212 (3%)

Query: 1   MDRRDGLALPGSASFYMQ-RGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGS 59
           MDR D +AL GS  +YMQ RG+ GSG   QP LH SP + PLSNP+L FQS+IGG TIGS
Sbjct: 1   MDRGDQMALSGS--YYMQQRGIPGSGG--QPELHISPNMRPLSNPNLPFQSSIGGGTIGS 56

Query: 60  TLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPS--VSTHPG 117
           TL ++ SSAIS HGVNV A    P  EPVKRKRGRPRKYG DGSVSLAL+P+   S+HPG
Sbjct: 57  TLPLE-SSAISAHGVNVGAPTGAPLGEPVKRKRGRPRKYGTDGSVSLALTPTPTSSSHPG 115

Query: 118 TISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQ 177
            +S +QKRGRGRPPGTG+KQQ++SLGE +SGSAGMGFTPH+I +A GEDIA K+++FSQQ
Sbjct: 116 ALSQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDIATKIMAFSQQ 175

Query: 178 GPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
           GPR +C+LSANGA+ST TLRQPS+SGG+VTYE
Sbjct: 176 GPRVVCILSANGAVSTVTLRQPSTSGGTVTYE 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067876|ref|XP_002302577.1| predicted protein [Populus trichocarpa] gi|222844303|gb|EEE81850.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 140/209 (66%), Positives = 168/209 (80%), Gaps = 11/209 (5%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD + + GSASF+MQ      GSGT PSL+ S GI+ LSN +  FQ N+G +T+GS 
Sbjct: 1   MDRRDTMTISGSASFFMQ------GSGTHPSLNVSSGINTLSNINAPFQPNMGANTMGSA 54

Query: 61  LSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTIS 120
           L ++  +AIS     V   ++M   +P KRKRGRPRKYGPDG+VSLALSPS+STHP T  
Sbjct: 55  LLMEHPAAIS-----VGELSTMVSGQPEKRKRGRPRKYGPDGAVSLALSPSLSTHPETSI 109

Query: 121 PTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPR 180
           P+QKRGRGRPPGTGRKQQ++SLGE LSGSAGMGFTPH+IT+AVGEDIA K++SFSQQGPR
Sbjct: 110 PSQKRGRGRPPGTGRKQQLASLGEWLSGSAGMGFTPHIITIAVGEDIATKIMSFSQQGPR 169

Query: 181 AICVLSANGAISTATLRQPSSSGGSVTYE 209
           AIC+LSANGA+ST TL QPS+SGG+VTYE
Sbjct: 170 AICILSANGAVSTVTLHQPSTSGGTVTYE 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518609|ref|XP_004166329.1| PREDICTED: uncharacterized LOC101203138 [Cucumis sativus]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 136/211 (64%), Positives = 171/211 (81%), Gaps = 9/211 (4%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD +AL GS SFYMQRG++ SGSG Q       G+   +NP++ FQ+N GG+ +GS 
Sbjct: 1   MDRRDPMALSGSQSFYMQRGISNSGSGAQ-------GLRSSTNPNVAFQTNTGGNNVGSG 53

Query: 61  LSVDPSSAISPHGVNVTA-SASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVS-THPGT 118
           L +DP+S ISP+G NV A S  +  SEPVKRKRGRPRKYG +G+VSLALSPS S  +P T
Sbjct: 54  LPMDPNSGISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPAT 113

Query: 119 ISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQG 178
           ++ + KRGRGRPPG+G+KQQ++SL E+LSGSAGMGFTPHVIT+ +GED+A K++SFSQQG
Sbjct: 114 VASSPKRGRGRPPGSGKKQQLASLCETLSGSAGMGFTPHVITIGIGEDVAAKIMSFSQQG 173

Query: 179 PRAICVLSANGAISTATLRQPSSSGGSVTYE 209
           PR +C+LSANGA+ST TLRQPS+SGG+VTYE
Sbjct: 174 PRVVCILSANGAVSTVTLRQPSTSGGTVTYE 204

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441474|ref|XP_004138507.1| PREDICTED: uncharacterized protein LOC101203138 [Cucumis sativus]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 136/211 (64%), Positives = 171/211 (81%), Gaps = 9/211 (4%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDRRD +AL GS SFYMQRG++ SGSG Q       G+   +NP++ FQ+N GG+ +GS 
Sbjct: 1   MDRRDPMALSGSQSFYMQRGISNSGSGAQ-------GLRSSTNPNVAFQTNTGGNNVGSG 53

Query: 61  LSVDPSSAISPHGVNVTA-SASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVS-THPGT 118
           L +DP+S ISP+G NV A S  +  SEPVKRKRGRPRKYG +G+VSLALSPS S  +P T
Sbjct: 54  LPMDPNSGISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPAT 113

Query: 119 ISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQG 178
           ++ + KRGRGRPPG+G+KQQ++SL E+LSGSAGMGFTPHVIT+ +GED+A K++SFSQQG
Sbjct: 114 VASSPKRGRGRPPGSGKKQQLASLCETLSGSAGMGFTPHVITIGIGEDVAAKIMSFSQQG 173

Query: 179 PRAICVLSANGAISTATLRQPSSSGGSVTYE 209
           PR +C+LSANGA+ST TLRQPS+SGG+VTYE
Sbjct: 174 PRVVCILSANGAVSTVTLRQPSTSGGTVTYE 204

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568374|ref|XP_003552386.1| PREDICTED: uncharacterized protein LOC100802542 isoform 1 [Glycine max] gi|356568376|ref|XP_003552387.1| PREDICTED: uncharacterized protein LOC100802542 isoform 2 [Glycine max]

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 142/212 (66%), Positives = 173/212 (81%), Gaps = 8/212 (3%)

Query: 1   MDRRDGLALPGSASFYMQ-RGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGS 59
           MDR D +AL  S S+YMQ RG+ GSG+   P LH SP + P+SNP+L FQS+IGG TIGS
Sbjct: 1   MDRGDQMAL--SGSYYMQQRGIPGSGA--PPELHISPNMRPISNPNLPFQSSIGGGTIGS 56

Query: 60  TLSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPS--VSTHPG 117
           TL ++ SSAIS HGVNV A    P  EPVKRKRGRPRKYG DGSVSLAL+P+   S++PG
Sbjct: 57  TLPLE-SSAISAHGVNVGAPTGAPPGEPVKRKRGRPRKYGTDGSVSLALTPTPTSSSYPG 115

Query: 118 TISPTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQ 177
            ++ +QKRGRGRPPGTG+KQQ++SLGE +SGSAGMGFTPH+I +A GEDI  K+++FSQQ
Sbjct: 116 ALTQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHIINIASGEDITTKIMAFSQQ 175

Query: 178 GPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
           G RA+C+LSANGA+ST TLRQPS+SGG+VTYE
Sbjct: 176 GARAVCILSANGAVSTVTLRQPSTSGGTVTYE 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520420|ref|XP_003528860.1| PREDICTED: uncharacterized protein LOC100799791 [Glycine max]

 Score =  262 bits (670), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 137/209 (65%), Positives = 168/209 (80%), Gaps = 2/209 (0%)

Query: 1   MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSPGIHPLSNPSLQFQSNIGGSTIGST 60
           MDR D +  PGSAS+YMQRG+ G+G+  QP LH SP I PLSN +L FQS+IGG     +
Sbjct: 1   MDRGDQMTFPGSASYYMQRGIPGAGN--QPELHNSPNIRPLSNSNLPFQSSIGGGGTIGS 58

Query: 61  LSVDPSSAISPHGVNVTASASMPQSEPVKRKRGRPRKYGPDGSVSLALSPSVSTHPGTIS 120
                SS IS   VNV+A +     E VKRKRGRPRKYGPDG+VSLAL+P+ ++HPG ++
Sbjct: 59  TLPLESSGISAPCVNVSAPSGAVPGETVKRKRGRPRKYGPDGAVSLALTPTPASHPGALA 118

Query: 121 PTQKRGRGRPPGTGRKQQVSSLGESLSGSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPR 180
             QKRGRGRPPG+G+KQQ++SLGE +SGSAGMGFTPH+IT+AVGEDIA K+++FSQQGPR
Sbjct: 119 QGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIITIAVGEDIATKIMAFSQQGPR 178

Query: 181 AICVLSANGAISTATLRQPSSSGGSVTYE 209
           AIC+LSANGA+ST TLRQPS+SGG+VTYE
Sbjct: 179 AICILSANGAVSTVTLRQPSTSGGTVTYE 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2098861	354	AT3G61310 [Arabidopsis thalian	0.280	0.166	0.711	4.1e-33
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.961	0.580	0.424	3.3e-31
TAIR|locus:2031306	361	AT1G63480 [Arabidopsis thalian	0.285	0.166	0.566	4.5e-22
TAIR|locus:2031321	378	AT1G63470 [Arabidopsis thalian	0.285	0.158	0.55	2e-21
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.280	0.168	0.644	1.6e-20
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.280	0.165	0.728	1e-19
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.280	0.185	0.728	1.9e-19
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.285	0.179	0.633	1e-16
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.266	0.133	0.678	2.8e-16
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.280	0.146	0.644	3.2e-16

TAIR|locus:2098861 AT3G61310 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 4.1e-33, Sum P(2) = 4.1e-33
 Identities = 42/59 (71%), Positives = 51/59 (86%)

Query:   151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             GM FTPHVI V++GEDIA K++SFS QGPRAICVLSA+GA+STATL QP+ S G++ YE
Sbjct:   161 GMSFTPHVIVVSIGEDIASKVISFSHQGPRAICVLSASGAVSTATLLQPAPSHGTIIYE 219

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 95/224 (42%), Positives = 120/224 (53%)

Query:     1 MDRRDGLALPGSASFYMQRGMTGSGSGTQPSLHGSP----GIHPLSNPSLQFQSNIGGST 56
             MDRRD + L GS S+Y+ RG++GSG    P+ HGSP    G+  L N +  F S  G + 
Sbjct:     1 MDRRDAMGLSGSGSYYIHRGLSGSGP---PTFHGSPQQQQGLRHLPNQNSPFGS--GSTG 55

Query:    57 IGS-TLSVDPSSAIS-------PH--GVNVTASASMPQSEXXXXXXXXXXXXXXXXSVSL 106
              GS +L  DPS A +       PH  GVN+ A    P                   SVSL
Sbjct:    56 FGSPSLHGDPSLATAAGGAGALPHHIGVNMIAPPPPPSETPMKRKRGRPRKYGQDGSVSL 115

Query:   107 ALSPS-VSTHPGTISXXXXXXXXXXXXXXXXXXVXXXXXXXXXXAGMGFTPHVITVAVGE 165
             ALS S VST   T +                  +          +GM FTPHVI V++GE
Sbjct:   116 ALSSSSVSTI--TPNNSNKRGRGRPPGSGKKQRMASVGELMPSSSGMSFTPHVIAVSIGE 173

Query:   166 DIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             DIA K+++FSQQGPRAICVLSA+GA+STATL QPS+S G++ YE
Sbjct:   174 DIASKVIAFSQQGPRAICVLSASGAVSTATLIQPSASPGAIKYE 217

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2031306 AT1G63480 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
 Identities = 34/60 (56%), Positives = 45/60 (75%)

Query:   150 AGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             AG+ F PHVI++  GEDIA K+LSFSQQ PRA+C++S  G IS+ TL +P S+   +TYE
Sbjct:   156 AGLAFAPHVISIGAGEDIAAKVLSFSQQRPRALCIMSGTGTISSVTLCKPGSTDRHLTYE 215

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2031321 AT1G63470 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
 Identities = 33/60 (55%), Positives = 47/60 (78%)

Query:   150 AGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             AG+ F PHVI+V  GEDI  K+LSFSQ+ PRA+C++S  G +S+ TLR+P+S+  S+T+E
Sbjct:   173 AGLAFAPHVISVGSGEDIVSKVLSFSQKRPRALCIMSGTGTVSSVTLREPASTTPSLTFE 232

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
 Identities = 38/59 (64%), Positives = 50/59 (84%)

Query:   151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             G+GFTPHV+TV  GED++ K+++ +  GPRA+CVLSANGAIS  TLRQ ++SGG+VTYE
Sbjct:   160 GIGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVLSANGAISNVTLRQSATSGGTVTYE 218

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 43/59 (72%), Positives = 51/59 (86%)

Query:   151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             G  FTPH+ITV  GED+ MK++SFSQQGPR+ICVLSANG IS+ TLRQP SSGG++TYE
Sbjct:   167 GGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANGVISSVTLRQPDSSGGTLTYE 225

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 43/59 (72%), Positives = 49/59 (83%)

Query:   151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             G  FTPHVITV  GEDI M+++SFSQQGPRAIC+LSANG IS  TLRQP S GG++TYE
Sbjct:   120 GSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVISNVTLRQPDSCGGTLTYE 178

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 38/60 (63%), Positives = 47/60 (78%)

Query:   150 AGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             A   FTPH+ITV  GED+  +++SFSQQG  AICVL ANG +S+ TLRQP SSGG++TYE
Sbjct:   146 AAANFTPHIITVNAGEDVTKRIISFSQQGSLAICVLCANGVVSSVTLRQPDSSGGTLTYE 205

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 2.8e-16, P = 2.8e-16
 Identities = 38/56 (67%), Positives = 47/56 (83%)

Query:   154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             FTPHV+TV  GED+ MK+++FSQQG RAIC+LSANG IS  TLRQ  +SGG++TYE
Sbjct:   178 FTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYE 233

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 3.2e-16, P = 3.2e-16
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query:   151 GMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGSVTYE 209
             G  FTPHV+ V  GED+ MK+++FSQQG RAIC+LSANG IS  TLRQ  +SGG++TYE
Sbjct:   163 GANFTPHVLIVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYE 221

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026831001 SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (345 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	3e-14
cd11378	113	cd11378, DUF296, Domain of unknown function found	4e-11

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score = 66.0 bits (162), Expect = 3e-14
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPS---SSGGSVTYE 209
             PHV+ +  GED+   L +F++Q      VLS  GA+S  TLRQP     S G VT E
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLE 59

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score = 57.6 bits (140), Expect = 4e-11
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSS---SGGSVTYE 209
            P V+ +  GED+   L +F+++      VLS  GA+S ATLR P        +VT+E
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFE 58

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	98.69
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.33
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.32
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	93.66
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	84.41
PF13546	273	DDE_5: DDE superfamily endonuclease	80.2

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=98.69  E-value=9.6e-09  Score=80.64  Aligned_cols=56  Identities=25%  Similarity=0.258  Sum_probs=47.9

Q ss_pred             ceeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCceeeEEecCCCC--CCCceEEe
Q 028357          154 FTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSS--SGGSVTYE  209 (210)
Q Consensus       154 ftPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVSnVTLRQP~s--sGgtvTYE  209 (210)
                      |++++|.+.+||||.++|.+||++.....|+||+.|++++|+|++++.  ...+++||
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~   58 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFE   58 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEec
Confidence            689999999999999999999999999999999999999999999743  23344443

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.33  E-value=0.0013  Score=34.88  Aligned_cols=12  Identities=75%  Similarity=1.140  Sum_probs=4.3

Q ss_pred             ccCCCCCCCCCC
Q 028357           89 KRKRGRPRKYGP  100 (210)
Q Consensus        89 KkKRGRPRKY~p  100 (210)
                      +|+||||+|+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            589999999764

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.32  E-value=0.002  Score=39.99  Aligned_cols=15  Identities=67%  Similarity=0.948  Sum_probs=13.0

Q ss_pred             ccCCCCCCCCCCCCC
Q 028357           89 KRKRGRPRKYGPDGS  103 (210)
Q Consensus        89 KkKRGRPRKY~pdg~  103 (210)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999998764

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=93.66  E-value=0.12  Score=43.15  Aligned_cols=45  Identities=29%  Similarity=0.353  Sum_probs=40.9

Q ss_pred             eEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCceeeEEecCCC
Q 028357          156 PHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPS  200 (210)
Q Consensus       156 PHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVSnVTLRQP~  200 (210)
                      =.++-+.+|||+.+.|.+||++..-...|.++-|++++++|+--+
T Consensus        11 ~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~   55 (141)
T COG1661          11 VIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFD   55 (141)
T ss_pred             EEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEec
Confidence            357788999999999999999999888999999999999999755

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=84.41  E-value=0.35  Score=42.58  Aligned_cols=12  Identities=75%  Similarity=1.107  Sum_probs=10.2

Q ss_pred             ccccCCCCCCCC
Q 028357           87 PVKRKRGRPRKY   98 (210)
Q Consensus        87 ~~KkKRGRPRKY   98 (210)
                      -.|||||||||-
T Consensus        66 dAKRKRGRPRKK   77 (219)
T PF14621_consen   66 DAKRKRGRPRKK   77 (219)
T ss_pred             hhhhhcCCCccC
Confidence            479999999964

>PF13546 DDE_5: DDE superfamily endonuclease

Probab=80.20  E-value=1  Score=38.87  Aligned_cols=16  Identities=63%  Similarity=1.076  Sum_probs=12.2

Q ss_pred             cccccCCCCCCCCCCC
Q 028357           86 EPVKRKRGRPRKYGPD  101 (210)
Q Consensus        86 ~~~KkKRGRPRKY~pd  101 (210)
                      .+..+|||||||||.-
T Consensus       228 ~~~~~~rGRPr~~g~~  243 (273)
T PF13546_consen  228 PPPPPKRGRPRKYGRR  243 (273)
T ss_pred             cccCCCCCCCCCCCCc
Confidence            3455569999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	2e-10
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	1e-09
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	8e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-05

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score = 56.2 bits (135), Expect = 2e-10
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 147 SGSAGMGFTPHVITVAVGEDIAMKLLSFSQQ-GPRAICVLSANGAISTATLRQPSSSGGS 205
           S         + + +  G+++  +L +F QQ   RA  +    G+++   LR       +
Sbjct: 11  SHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEATT 70

Query: 206 VTYE 209
               
Sbjct: 71  SLTG 74

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 156 PHVITVAVGEDIAMKLLSF-SQQGPRAICVLSANGAISTATLRQPSSSG 203
              + +  G D+  +++    Q    A  + S  G +ST  +R   S  
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS 52

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 43.0 bits (101), Expect = 8e-06
 Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 148 GSAGMGFTPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSGGS 205
            S G     ++  V  GE++   + +F ++      +++  G +    +         
Sbjct: 6   FSLG---RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKE 60

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 5/29 (17%), Positives = 16/29 (55%)

Query: 84  QSEPVKRKRGRPRKYGPDGSVSLALSPSV 112
           + + +K+ +   + Y  D + +LA+  ++
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	98.85
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	98.84
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	98.55
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	98.5
3htn_A	149	Putative DNA binding protein; DUF269 family protei	98.13
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	96.74
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	96.09

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=98.85  E-value=4.7e-09  Score=84.78  Aligned_cols=60  Identities=15%  Similarity=0.249  Sum_probs=52.6

Q ss_pred             CCCCCceeEEEEeCCCchHHHHHHhhhh-cCCceEEEecCCCceeeEEecCCCCCCCceEEe
Q 028357          149 SAGMGFTPHVITVAVGEDIAMKLLSFSQ-QGPRAICVLSANGAISTATLRQPSSSGGSVTYE  209 (210)
Q Consensus       149 s~g~~ftPHVItV~~GEDV~~kI~sFaq-qg~raICILSA~GaVSnVTLRQP~ssGgtvTYE  209 (210)
                      +....+++|+|++.+||||.++|..||+ ++-++.|||++.|++++|+||+++... +++||
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~   73 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLT   73 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEE
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecC
Confidence            4567899999999999999999999996 566799999999999999999998865 55553

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=98.84  E-value=3.7e-09  Score=84.24  Aligned_cols=55  Identities=20%  Similarity=0.268  Sum_probs=48.9

Q ss_pred             ceeEEEEeCCCchHHHHHHhhhhc-CCceEEEecCCCceeeEEecCCCCCCCceEEe
Q 028357          154 FTPHVITVAVGEDIAMKLLSFSQQ-GPRAICVLSANGAISTATLRQPSSSGGSVTYE  209 (210)
Q Consensus       154 ftPHVItV~~GEDV~~kI~sFaqq-g~raICILSA~GaVSnVTLRQP~ssGgtvTYE  209 (210)
                      |++|+|++.+||||.++|..||++ +-++.|||++.|++++|+||+|+... +++||
T Consensus         2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~   57 (142)
T 2p6y_A            2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVS   57 (142)
T ss_dssp             CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEEC
T ss_pred             CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecC
Confidence            789999999999999999999986 55689999999999999999999865 45553

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=98.55  E-value=3e-08  Score=78.70  Aligned_cols=49  Identities=10%  Similarity=0.204  Sum_probs=43.6

Q ss_pred             eeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCceeeEEecCCCCCC
Q 028357          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG  203 (210)
Q Consensus       155 tPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVSnVTLRQP~ssG  203 (210)
                      ++|+|++.+||||.++|..||++.....|++++.|++++|+||+++...
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~   58 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEK   58 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTT
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCcc
Confidence            6999999999999999999999877666667999999999999987654

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=98.50  E-value=5.1e-08  Score=77.60  Aligned_cols=49  Identities=16%  Similarity=0.246  Sum_probs=42.7

Q ss_pred             eeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCceeeEEecCCCCCC
Q 028357          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSSG  203 (210)
Q Consensus       155 tPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVSnVTLRQP~ssG  203 (210)
                      ++|+|++.+||||.++|..||++.....|++++.|++++|+||+++...
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~   58 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEK   58 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTT
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCC
Confidence            5999999999999999999998766544445999999999999987765

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=98.13  E-value=1.4e-06  Score=69.88  Aligned_cols=48  Identities=19%  Similarity=0.214  Sum_probs=44.1

Q ss_pred             eeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCceeeEEecCCCCC
Q 028357          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPSSS  202 (210)
Q Consensus       155 tPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVSnVTLRQP~ss  202 (210)
                      +.++|.+.+||||.++|..||++.....|++++.|++++|+||+++..
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~   63 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPK   63 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTT
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCC
Confidence            689999999999999999999998888888899999999999997553

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=96.74  E-value=0.00071  Score=40.94  Aligned_cols=17  Identities=59%  Similarity=0.954  Sum_probs=14.9

Q ss_pred             CcCcCCCCCCCCCCCCc
Q 028357          121 PTQKRGRGRPPGTGRKQ  137 (210)
Q Consensus       121 ~~~KR~RGRP~GS~nK~  137 (210)
                      +..||+||||.|||||.
T Consensus         2 ptpKrpRgRpkGSKNk~   18 (26)
T 2ezd_A            2 PTPKRPRGRPKGSKNKG   18 (26)
T ss_dssp             CSCCCCSSCCTTCCCCS
T ss_pred             CCCcCCCCCcCcccccC
Confidence            34799999999999995

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=96.09  E-value=0.0049  Score=48.99  Aligned_cols=45  Identities=13%  Similarity=0.163  Sum_probs=40.6

Q ss_pred             eEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCceeeEEecCCC
Q 028357          156 PHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQPS  200 (210)
Q Consensus       156 PHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVSnVTLRQP~  200 (210)
                      -.++.+.+||||.+.|..||++..-.-+++++-|++++++|+-.+
T Consensus        14 ~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~   58 (147)
T 3hwu_A           14 GYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYD   58 (147)
T ss_dssp             EEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEE
T ss_pred             EEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeec
Confidence            378999999999999999999998877888999999999999543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	2e-06
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	1e-04

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 147 SGSAGMGFTPHVITVAVGEDIAMKLLSFS-QQGPRAICVLSANGAISTATLRQPSSSG 203
           + S       + + +  G+++  +L +F  Q   RA  +    G+++   LR      
Sbjct: 2   NASTA---RFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA 56

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 157 HVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLR---QPSSSGGSVTYE 209
            ++ +  G+D+  ++  F ++       +SA GA+ +A +    Q           
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELM 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	98.13
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	97.85

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.13  E-value=2.4e-06  Score=65.72  Aligned_cols=53  Identities=19%  Similarity=0.279  Sum_probs=47.5

Q ss_pred             CCCceeEEEEeCCCchHHHHHHhhhhc-CCceEEEecCCCceeeEEecCCCCCC
Q 028357          151 GMGFTPHVITVAVGEDIAMKLLSFSQQ-GPRAICVLSANGAISTATLRQPSSSG  203 (210)
Q Consensus       151 g~~ftPHVItV~~GEDV~~kI~sFaqq-g~raICILSA~GaVSnVTLRQP~ssG  203 (210)
                      ++..+-+++.+.+||||.++|..||++ +-++.||+++-|++++|+|++|....
T Consensus         3 ~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~~   56 (136)
T d2hx0a1           3 ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA   56 (136)
T ss_dssp             CCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS
T ss_pred             CCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCCC
Confidence            467899999999999999999999965 55899999999999999999987654

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.85  E-value=4.2e-06  Score=63.77  Aligned_cols=45  Identities=18%  Similarity=0.269  Sum_probs=42.3

Q ss_pred             eeEEEEeCCCchHHHHHHhhhhcCCceEEEecCCCceeeEEecCC
Q 028357          155 TPHVITVAVGEDIAMKLLSFSQQGPRAICVLSANGAISTATLRQP  199 (210)
Q Consensus       155 tPHVItV~~GEDV~~kI~sFaqqg~raICILSA~GaVSnVTLRQP  199 (210)
                      +-+++.+.+||||.++|..||++.....|++++-|++++|+|+.-
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~   54 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYY   54 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEe
Confidence            678999999999999999999999988899999999999999953