Citrus Sinensis ID: 028361

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKSAGGTLLDDGHEENIEEKMQRATFVQQLIMSTVF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHcHHHHHHHHcccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccHHHcccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHcccccccccccEHHHHHccHcccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccccHcccccccccccccccccccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MDIDFWASRVHSAKHFSAVRasrlntdnhsivdeteidddvkacfpcpfcyLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGlrnggsamLGKELssflgsptivrgnapeslpdpllspflcsgtlsdtkgiqkddctnkfsLASDLksaggtllddgheeNIEEKMQRATFVQQLIMSTVF
Flexible Loop (DISEMBL)
mdidfwasrvhsakhfsavrasrlntdnhsivdeteidddvkaCFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKSAGGTLLDDGHEENIEEKMQRATFVQQLIMSTVF
Low Complexity Region (SEG)
MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKSAGGTLLDDGHEENIEEKMQRATFVQQLIMSTVF
Disordered region (IsUnstruct)
****FWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQH*************************************************LSPFLCSGTL********************************************************
Disordered Region (DISOPRED)
***DFW*****************************EIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMV***************************************************LSPFLC*************************************************FVQQLIMSTVF
Disordered Region (DISEMBL)
MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKSAGGTLLDDGHEENIEEKMQRATFVQQLIMSTVF
Disordered Region (DISPRO)
*****W*******KHFSAVRASR******SIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLK********A********FLG******************************************************************KMQRATFVQQLIMSTVF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKSAGGTLLDDGHEENIEEKMQRATFVQQLIMSTVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q7XBA5	208	Protein DEHYDRATION-INDUC	yes	no	0.885	0.894	0.418	6e-36
Q5JME8	202	Protein DEHYDRATION-INDUC	no	no	0.776	0.806	0.420	2e-31
Q688X9	226	Protein DEHYDRATION-INDUC	no	no	0.980	0.911	0.320	3e-21
Q5W794	233	Protein DEHYDRATION-INDUC	no	no	0.747	0.673	0.336	4e-18
Q6NM26	222	Protein DEHYDRATION-INDUC	yes	no	0.942	0.891	0.304	8e-18
Q39083	206	Protein DEHYDRATION-INDUC	no	no	0.828	0.844	0.329	1e-17
Q9FJ17	211	Protein DEHYDRATION-INDUC	no	no	0.8	0.796	0.302	3e-14
Q84J70	223	Protein DEHYDRATION-INDUC	no	no	0.961	0.905	0.308	7e-14
Q6H6E6	245	Protein DEHYDRATION-INDUC	no	no	0.452	0.387	0.330	8e-13
O04259	214	Protein DEHYDRATION-INDUC	no	no	0.790	0.775	0.276	1e-12

>sp|Q7XBA5|DI196_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Oryza sativa subsp. japonica GN=DI19-6 PE=2 SV=1

 Score =  150 bits (379), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 80/191 (41%), Positives = 114/191 (59%), Gaps = 5/191 (2%)

Query: 24  LNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL 83
           + T N  +  E   DD+     PCPFCY+E+E H +C HLQEEHCF+MKNAVCP+CA NL
Sbjct: 16  IPTINFQMYSEIAGDDEWWEYIPCPFCYIEVEVHFLCDHLQEEHCFDMKNAVCPICADNL 75

Query: 84  GKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK-ELSSFLGSPTIVRGN-APESLP 141
            KD  EHF VQH+  LKRR+    S   +  +A  G  E  S+  +P+   G  AP+S P
Sbjct: 76  DKDTDEHFRVQHSHLLKRRKSSSFSCKPSSAAADKGSYEEDSYFEAPSHCMGRPAPDSSP 135

Query: 142 DPLLSPFLC---SGTLSDTKGIQKDDCTNKFSLASDLKSAGGTLLDDGHEENIEEKMQRA 198
           DPLLS F+C   +  +   +  + D   +  S + D K     ++DD  +E +EE++QR 
Sbjct: 136 DPLLSQFICCSLAPPVDSPRRSEADAEGHGSSSSDDQKRREQGVMDDASKEELEERLQRI 195

Query: 199 TFVQQLIMSTV 209
            FV+Q++M+T+
Sbjct: 196 EFVKQMLMTTI 206

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5JME8|DI195_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Oryza sativa subsp. japonica GN=DI19-5 PE=2 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 71/169 (42%), Positives = 98/169 (57%), Gaps = 6/169 (3%)

Query: 45  FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRK 104
           FPCPFCY+E+E   IC+HLQEEHCF+ +NAVCPLCA N+G+D   HF VQH+  LKRR+ 
Sbjct: 37  FPCPFCYIEVEVPFICNHLQEEHCFDTRNAVCPLCADNIGRDMGAHFRVQHSHLLKRRKP 96

Query: 105 CLKSGLRNGGSAMLGKELSSFLGSPTIVRGN--APESLPDPLLSPFLCSGTLSDTKGIQK 162
              S      S         F G P  +  N    +  PDPLLS F+CS   +DT     
Sbjct: 97  SRPSSSWPTPS---NNSDPYFEGPPQYMMNNRTYQDPAPDPLLSQFICSMAQTDTNSDNT 153

Query: 163 DDCTNKFSLASDLK-SAGGTLLDDGHEENIEEKMQRATFVQQLIMSTVF 210
           +      +++ D + S   TL DD  +  ++E++QR  FV+++IMST+ 
Sbjct: 154 NTEIAVSAVSHDQRLSQRVTLTDDASKLELKERLQRIEFVKEIIMSTIL 202

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q688X9|DI191_ORYSJ Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica GN=DI19-1 PE=2 SV=1

 Score =  102 bits (253), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 22/228 (9%)

Query: 1   MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMIC 60
           MD + W SR+ +AK F A   ++L   + + ++E ++D++V+  F CP+CY + +   +C
Sbjct: 1   MDSEHWISRLAAAKRFYA---AQLGHADRAGMEEVDMDEEVRPEFACPYCYEDHDVVSLC 57

Query: 61  SHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSA--ML 118
           +HL+EEH FE   A CP+C+  + KD   H  VQH    K RR+ L+  +  G  A  +L
Sbjct: 58  AHLEEEHPFEPHAAPCPICSDKIAKDMLNHITVQHGYLFKNRRR-LRRFVIPGSQALSLL 116

Query: 119 GKELSS-----FLGSPTIVRGNAPESL---PDPLLSPFLCSGTLSDTK-------GIQKD 163
            ++L        LG       N+  +     DPLLS F  S   SDT+        I  D
Sbjct: 117 SRDLREAHLQVLLGGGGHRSNNSSNTTNISADPLLSSFGLSFPTSDTEETSKPPISIPDD 176

Query: 164 DCTNKFSLASDLKSA-GGTLLDDGHEENIEEKMQRATFVQQLIMSTVF 210
               K + A    S+   +L  +  E+  ++   RATFVQ L+++T+F
Sbjct: 177 ASVIKETPAQPWDSSIDSSLTREEREQKRKQASVRATFVQDLLLTTLF 224

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5W794|DI192_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza sativa subsp. japonica GN=DI19-2 PE=2 SV=2

 Score = 91.3 bits (225), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 91/184 (49%), Gaps = 27/184 (14%)

Query: 45  FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLK--RR 102
           + CPFC  + +    C H+ +EH  E K+ VCP+CA  +G D   H  +QH S  K  RR
Sbjct: 54  YNCPFCGEDFDFVAFCCHVDDEHAVEAKSGVCPICATRVGVDLIGHLTMQHGSYFKMQRR 113

Query: 103 RKCLK-------------SGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFL 149
           R+  K               LR+G        L SFLG  + V  N P + PDP LS  +
Sbjct: 114 RRVRKISSGSHSLLSLLRKDLRDG-------SLQSFLGGSSYV-SNPPAAAPDPFLSSLI 165

Query: 150 CSGTLSD-TKGIQKDDCTNKFSLAS--DLKSAGGTLLDDGHEENIEEKMQRATFVQQLIM 206
           CS  +++ +K +  D   N F L    D K+A         E++ +E+ QR+ FV+ L++
Sbjct: 166 CSLPVAEPSKDLHSDSSDNNFLLNKFPDDKTA-ERAEPSLSEKDQKERAQRSKFVRGLVL 224

Query: 207 STVF 210
           ST+F
Sbjct: 225 STIF 228

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6NM26|DI196_ARATH Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabidopsis thaliana GN=DI19-6 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 106/230 (46%), Gaps = 32/230 (13%)

Query: 1   MDIDFWASRVHSA-KHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMI 59
           MD D W+ R+ SA + +     SR  +DN    +E E +DD +  + CPFC    +   +
Sbjct: 1   MDSDSWSDRLASASRRYQLDFLSR--SDNFLGFEEIEGEDDFREEYACPFCSDYFDIVSL 58

Query: 60  CSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAML- 118
           C H+ E+H  + KN VCP+CA  +  D   H  +QHA+  K  RK  +   R G  +ML 
Sbjct: 59  CCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRK--RKSRRGGAQSMLS 116

Query: 119 --------GKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFS 170
                   G   S F G+   V  ++     DPLLS F+          +  D   ++ S
Sbjct: 117 ILKREFPDGNFQSLFEGTSRAVSSSSASIAADPLLSSFI--------SPMADDFFISESS 168

Query: 171 LASDLKSAGGTLLDDGHEENIE----------EKMQRATFVQQLIMSTVF 210
           L +D  SA  TL     E N+E          EK++++ FVQ ++ S + 
Sbjct: 169 LCADTSSAKKTLNQSLPERNVEKQSLSAEDHREKLKQSEFVQGILSSMIL 218

Arabidopsis thaliana (taxid: 3702)

>sp|Q39083|DI191_ARATH Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thaliana GN=DI19-1 PE=1 SV=2

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 91/185 (49%), Gaps = 11/185 (5%)

Query: 33  DETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFM 92
           +E + DDD +  F CPFC    +   +C H+ +EH  E KNAVCP+C+  +G D   H  
Sbjct: 23  EEIDGDDDFQEEFACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVAHIT 82

Query: 93  VQHAS--SLKRRRKCLKSGLRNGGSAMLGKE-----LSSFLGSPTIVRGNAPESLPDPLL 145
           + H S   L+R+RK  KSG  N   ++L KE     L   LG  +     A    PDPLL
Sbjct: 83  LHHGSLFKLQRKRKSRKSGT-NSTLSLLRKELREGDLQRLLGFTSRNGSVASSVTPDPLL 141

Query: 146 SPFLCSGTLSDTKGIQKDDCTNKFSLASDLKSAGGTLLDDGHEENIEEKMQRATFVQQLI 205
           S F+ S T S +    +   T   S    ++      +     ++ EE+  ++ FVQ+L+
Sbjct: 142 SSFI-SPTRSQSSPAPRQ--TKNVSEDKQIERKRQVFISPVSLKDREERRHKSEFVQRLL 198

Query: 206 MSTVF 210
            S +F
Sbjct: 199 SSAIF 203

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ17|DI197_ARATH Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana GN=DI19-7 PE=1 SV=2

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 17/185 (9%)

Query: 34  ETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMV 93
           + E +DD+KA F CPFC  E +   +C H+   H  E KN VCP+C   +G D   H   
Sbjct: 32  DVEGEDDLKAEFMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITT 91

Query: 94  QHASSLK-RRRKCLKSGLRNGGSAMLGKE-----LSSFLGSPTIVRGNAPESLPDPLLSP 147
           QH +  K +RR+ L+ G  +     L KE     L S  GS T +  +  +S  DPLLS 
Sbjct: 92  QHGNVFKVQRRRRLRKGGYSSTYLTLKKELREANLQSLGGSSTFIPSSNIDS--DPLLSS 149

Query: 148 FLCS--GTLSDTKGIQKDDCTNKFSLASDLKSAGGTLLDDGHEENIEEKMQRATFVQQLI 205
           F+      +  T+G       +  +  S   ++   +  +      +EK +++ FV+ L+
Sbjct: 150 FMFKPPSAIPITEG-------DSVAQVSPKDTSKSKIQQESFSNEDQEKAKKSKFVRGLL 202

Query: 206 MSTVF 210
            ST+ 
Sbjct: 203 WSTML 207

Involved in both red and blue light signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84J70|DI193_ARATH Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana GN=DI19-3 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 112/227 (49%), Gaps = 25/227 (11%)

Query: 1   MDIDFWASRVHSA-KHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMI 59
           MD D W+ R+ SA + +     SR  +D     +E + +++ +  F CPFC    +   +
Sbjct: 1   MDSDSWSDRLASATRRYQLAFPSR--SDTFLGFEEIDGEEEFREEFACPFCSDYFDIVSL 58

Query: 60  CSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGS---- 115
           C H+ E+H  E KN VCP+CA  +G D   H  +QHA+  K  R   K   R GGS    
Sbjct: 59  CCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHR---KRKPRRGGSYSTL 115

Query: 116 AMLGKEL------SSFLGSPTIVRGNAPESL-PDPLLSPF---LCSGTLSDTKGIQKDDC 165
           ++L +E       S F GS  IV  ++  ++  DPLLS F   +  G  +    I  +  
Sbjct: 116 SILRREFPDGNFQSLFGGSSCIVSSSSSSNVAADPLLSSFISPIADGFFTTESCISAETG 175

Query: 166 TNKFSLASDL--KSAGGTLLDDGHEENIEEKMQRATFVQQLIMSTVF 210
             K +    L  ++A  T L     E+ ++K++R+ FV++L+ ST+ 
Sbjct: 176 PVKKTTIQCLPEQNAKKTSLS---AEDHKQKLKRSEFVRELLSSTIL 219

Arabidopsis thaliana (taxid: 3702)

>sp|Q6H6E6|DI194_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp. japonica GN=DI19-4 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 17/112 (15%)

Query: 1   MDIDFWASRVHSAKHFSAVRASR----------------LNTDNHSIVDETEIDDDVKAC 44
           MD D W SR+ +AK   A++ ++                 + D +   D+ E +D+V+  
Sbjct: 1   MDSDHWISRLMAAKRQYALQRAQNHHHATATATATAASHSHLDRYGY-DDVEPEDEVRPD 59

Query: 45  FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHA 96
           FPCP+CY + +   +C+HL++EH FE K   CP+C+A + KD  +H  +QH+
Sbjct: 60  FPCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHS 111

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04259|DI195_ARATH Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Arabidopsis thaliana GN=DI19-5 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 22/188 (11%)

Query: 34  ETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMV 93
           E E DD++   +PCPFC  + +   +C H+ EEH  +  N +CP+C+  +     +H   
Sbjct: 32  EFEDDDEMAVDYPCPFCSDDYDLVELCHHIDEEHQLDANNGICPVCSRRVKMHMVDHITT 91

Query: 94  QHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGT 153
           QH    KR  K       + G+    K L S +  P +   +  +S+ DPLLS      +
Sbjct: 92  QHRDVFKRLYKDESYSAFSPGTR---KYLQSLIDEP-LSTNHTSKSVLDPLLSFIYNPPS 147

Query: 154 LSDTKGIQKDDCTNKFSLASDLKSAGGTLLDDGHEENIE-----------EKMQRATFVQ 202
              +K +Q D        +S+      +L+ D  E++ E           EK ++  FVQ
Sbjct: 148 PKKSKLVQPDS-------SSEASMEDNSLIRDSTEKDWESPSPLSDTELLEKAKKREFVQ 200

Query: 203 QLIMSTVF 210
            LI S +F
Sbjct: 201 GLISSAIF 208

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
224119454	208	predicted protein [Populus trichocarpa]	0.990	1.0	0.609	4e-63
359491142	192	PREDICTED: protein DEHYDRATION-INDUCED 1	0.9	0.984	0.596	1e-59
255540495	299	conserved hypothetical protein [Ricinus	0.861	0.605	0.542	4e-47
449469572	189	PREDICTED: protein DEHYDRATION-INDUCED 1	0.885	0.984	0.450	2e-40
358248684	194	uncharacterized protein LOC100801801 [Gl	0.904	0.979	0.413	8e-35
115461655	208	Os05g0107900 [Oryza sativa Japonica Grou	0.885	0.894	0.418	3e-34
28195116	208	unknown [Oryza sativa Indica Group] gi|1	0.885	0.894	0.413	4e-33
115442503	202	Os01g0971100 [Oryza sativa Japonica Grou	0.776	0.806	0.420	1e-29
238014610	208	unknown [Zea mays]	0.766	0.774	0.397	1e-27
357126984	223	PREDICTED: protein DEHYDRATION-INDUCED 1	0.785	0.739	0.390	1e-27

>gi|224119454|ref|XP_002318076.1| predicted protein [Populus trichocarpa] gi|222858749|gb|EEE96296.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 128/210 (60%), Positives = 159/210 (75%), Gaps = 2/210 (0%)

Query: 1   MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMIC 60
           MD+DFW SRV S+K+ SAV+A+  N+DNH  +D+++ DD+ +A FPCPFCY+EIE H+ C
Sbjct: 1   MDVDFWTSRVLSSKNLSAVQAASRNSDNHLAMDDSDGDDNSRAYFPCPFCYVEIEVHLFC 60

Query: 61  SHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK 120
           SHL +EHCF++KNAVCPLCAANLGKDA  HF+VQHASSLK RRK  KSGL  G SAMLGK
Sbjct: 61  SHLLDEHCFDLKNAVCPLCAANLGKDAIGHFIVQHASSLKHRRKHKKSGLWTGSSAMLGK 120

Query: 121 ELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKSAGG 180
           +LSSFLGS T  R N  ES PDPLLSPFL + + SD +  Q D+  N    AS  KS+G 
Sbjct: 121 DLSSFLGSSTNSRTNTHESAPDPLLSPFLGNLSRSDPRQSQHDEPFNI--SASHSKSSGM 178

Query: 181 TLLDDGHEENIEEKMQRATFVQQLIMSTVF 210
           + LD G + + EE+ Q++TFVQQLI ST+F
Sbjct: 179 SSLDRGSQVDYEEQRQKSTFVQQLIASTIF 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491142|ref|XP_002280304.2| PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 5-like [Vitis vinifera] gi|297733696|emb|CBI14943.3| unnamed protein product [Vitis vinifera]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 124/208 (59%), Positives = 150/208 (72%), Gaps = 19/208 (9%)

Query: 4   DFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHL 63
           DFWASRVHSAKH +AV+A+RLN+         E DDD +A FPCPFCY++IE  ++CSHL
Sbjct: 3   DFWASRVHSAKHLTAVQAARLNS---------EGDDDARAYFPCPFCYVDIEIPVLCSHL 53

Query: 64  QEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELS 123
           QEEHCF++KNAVCPLCAANLGKD   HF +QHA SLKRRRK  KSG          +ELS
Sbjct: 54  QEEHCFDLKNAVCPLCAANLGKDVIGHFTLQHAHSLKRRRKSQKSGAWTNSPL---RELS 110

Query: 124 SFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDC-TNKFSLASDLKSAGGTL 182
           SFLGS    RGN+ ES PDPLLSPFLCS ++SD  G Q+D C ++  S ASD+KS   + 
Sbjct: 111 SFLGS----RGNSYESAPDPLLSPFLCSISVSD--GNQQDKCSSDNASFASDMKSTVPST 164

Query: 183 LDDGHEENIEEKMQRATFVQQLIMSTVF 210
             +G E++ EE+ QRA FVQQLI ST+F
Sbjct: 165 PSEGQEQDYEERQQRAIFVQQLIGSTIF 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540495|ref|XP_002511312.1| conserved hypothetical protein [Ricinus communis] gi|223550427|gb|EEF51914.1| conserved hypothetical protein [Ricinus communis]

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 103/190 (54%), Positives = 130/190 (68%), Gaps = 9/190 (4%)

Query: 24  LNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL 83
            N D+H ++D+++ DDD +A FPCPFCY++IE H++CSHLQ EHCF++KNAVCPLCAANL
Sbjct: 116 FNRDHHLLIDDSDGDDDARAYFPCPFCYVDIEIHVLCSHLQNEHCFDLKNAVCPLCAANL 175

Query: 84  GKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDP 143
           GKD   HF+V HASSLKRRRK LKSG   G SAM+ K+L SFLGS    R N  E+ PDP
Sbjct: 176 GKDVIGHFIVHHASSLKRRRKSLKSGPWIGSSAMINKDLGSFLGSSANGRANINEAAPDP 235

Query: 144 LLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLK---SAGGTLLDDGHEENIEEKMQRATF 200
           LLSPFL   + S  KG ++D+     + ++  +     GG  LD       EE+ QRA F
Sbjct: 236 LLSPFLGGVSHSHPKGSEQDESCKMSAHSASFEISWHGGGDKLDS------EERRQRAAF 289

Query: 201 VQQLIMSTVF 210
           VQQLI ST+ 
Sbjct: 290 VQQLIASTII 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469572|ref|XP_004152493.1| PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 5-like [Cucumis sativus]

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 130/213 (61%), Gaps = 27/213 (12%)

Query: 1   MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMIC 60
           M+ +FWASRVH     SAV+A+ L++D          +DD +  F CP+CY++IE  ++C
Sbjct: 1   MEFNFWASRVHPTDQLSAVQAAMLHSDG---------EDDSRPYFSCPYCYVDIEVQVLC 51

Query: 61  SHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK 120
           SHLQ+EHCF+ +NAVCPLCAA+LGKD   HF  QH+SS+KRR+K  KS            
Sbjct: 52  SHLQDEHCFDFRNAVCPLCAASLGKDVIGHFTAQHSSSIKRRKKPEKSV----------- 100

Query: 121 ELSSFLGSPTIVRGNAPE--SLPDPLLSPFLCSGTLSDTKGIQKDDCT-NKFSLASDLKS 177
             S F     I +G      S PDPLL PF+CS   SD +  ++DD + N  S+A ++KS
Sbjct: 101 -SSGFNSKKVITKGREKRNGSAPDPLL-PFICSIPFSDHESGERDDRSENDASVAVNIKS 158

Query: 178 AGGTLLDDGHEENIEEKMQRATFVQQLIMSTVF 210
               LL+    +N EE  +RA+FVQQLI ST+F
Sbjct: 159 NSSQLLE--RNQNSEELNRRASFVQQLITSTIF 189

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248684|ref|NP_001239667.1| uncharacterized protein LOC100801801 [Glycine max] gi|255644938|gb|ACU22969.1| unknown [Glycine max]

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 125/213 (58%), Gaps = 23/213 (10%)

Query: 1   MDIDFWASRVHSAKHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMIC 60
           MD DF  S  HS KH SAV+A+RL++D         +D+D +  F CPFC  EIE  ++C
Sbjct: 1   MDFDFRTS-FHSVKHLSAVQAARLHSD---------VDNDGRCDFRCPFCDFEIEVPVLC 50

Query: 61  SHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK 120
           S+ +EEHC  +KN VCP+C  N+GKDA   F   H+SS +   K  KS +  G SAMLGK
Sbjct: 51  SNFEEEHCSALKNVVCPVCEENIGKDAIMQFT--HSSSRRWAWKPEKSSIWPGNSAMLGK 108

Query: 121 ELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLKSAGG 180
           +L++        RGN  ES+ DPLLSPF+C+     +     D+ +   +   D+ +A  
Sbjct: 109 KLAT--------RGNKQESITDPLLSPFICNVPFPKSNNFHPDENSRSNNKDIDIPNAKR 160

Query: 181 TLL---DDGHEENIEEKMQRATFVQQLIMSTVF 210
           T     D G E++ +E+  +A FVQQL++ST+F
Sbjct: 161 TSTDAPDKGDEKDQQERRLKAAFVQQLVLSTIF 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115461655|ref|NP_001054427.1| Os05g0107900 [Oryza sativa Japonica Group] gi|75141142|sp|Q7XBA5.1|DI196_ORYSJ RecName: Full=Protein DEHYDRATION-INDUCED 19 homolog 6; AltName: Full=OsDi19-6 gi|14719312|gb|AAK73130.1|AC079022_3 unknown protein [Oryza sativa] gi|33151123|gb|AAP97430.1| drought-induced protein DI1 [Oryza sativa Japonica Group] gi|113577978|dbj|BAF16341.1| Os05g0107900 [Oryza sativa Japonica Group] gi|222629917|gb|EEE62049.1| hypothetical protein OsJ_16833 [Oryza sativa Japonica Group]

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/191 (41%), Positives = 114/191 (59%), Gaps = 5/191 (2%)

Query: 24  LNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL 83
           + T N  +  E   DD+     PCPFCY+E+E H +C HLQEEHCF+MKNAVCP+CA NL
Sbjct: 16  IPTINFQMYSEIAGDDEWWEYIPCPFCYIEVEVHFLCDHLQEEHCFDMKNAVCPICADNL 75

Query: 84  GKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK-ELSSFLGSPTIVRGN-APESLP 141
            KD  EHF VQH+  LKRR+    S   +  +A  G  E  S+  +P+   G  AP+S P
Sbjct: 76  DKDTDEHFRVQHSHLLKRRKSSSFSCKPSSAAADKGSYEEDSYFEAPSHCMGRPAPDSSP 135

Query: 142 DPLLSPFLC---SGTLSDTKGIQKDDCTNKFSLASDLKSAGGTLLDDGHEENIEEKMQRA 198
           DPLLS F+C   +  +   +  + D   +  S + D K     ++DD  +E +EE++QR 
Sbjct: 136 DPLLSQFICCSLAPPVDSPRRSEADAEGHGSSSSDDQKRREQGVMDDASKEELEERLQRI 195

Query: 199 TFVQQLIMSTV 209
            FV+Q++M+T+
Sbjct: 196 EFVKQMLMTTI 206

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28195116|gb|AAO33770.1| unknown [Oryza sativa Indica Group] gi|125550535|gb|EAY96244.1| hypothetical protein OsI_18142 [Oryza sativa Indica Group]

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 113/191 (59%), Gaps = 5/191 (2%)

Query: 24  LNTDNHSIVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL 83
           + T N  +  E   DD+     PCPFCY+E+E   +C HLQEEHCF+MKNAVCP+CA NL
Sbjct: 16  IPTINFQMYSEIAGDDEWWEYIPCPFCYIEVEVPFLCDHLQEEHCFDMKNAVCPICADNL 75

Query: 84  GKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGK-ELSSFLGSPTIVRGN-APESLP 141
            KD  EHF VQH+  LKRR+    S   +  +A  G  E  S+  +P+   G  AP+S P
Sbjct: 76  DKDTDEHFRVQHSHLLKRRKSSSFSCKPSSAAADKGSYEEDSYFEAPSHCMGRPAPDSSP 135

Query: 142 DPLLSPFLC---SGTLSDTKGIQKDDCTNKFSLASDLKSAGGTLLDDGHEENIEEKMQRA 198
           DPLLS F+C   +  +   +  + D   +  S + D K     ++DD  +E +EE++QR 
Sbjct: 136 DPLLSQFICCSLAPPVDSPRRSEADAEGHGSSSSDDQKRREQGVMDDASKEELEERLQRI 195

Query: 199 TFVQQLIMSTV 209
            FV+Q++M+T+
Sbjct: 196 EFVKQMLMTTI 206

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115442503|ref|NP_001045531.1| Os01g0971100 [Oryza sativa Japonica Group] gi|75106327|sp|Q5JME8.1|DI195_ORYSJ RecName: Full=Protein DEHYDRATION-INDUCED 19 homolog 5; AltName: Full=OsDi19-5 gi|57899211|dbj|BAD87360.1| putative drought-induced protein DI [Oryza sativa Japonica Group] gi|113535062|dbj|BAF07445.1| Os01g0971100 [Oryza sativa Japonica Group] gi|125529280|gb|EAY77394.1| hypothetical protein OsI_05382 [Oryza sativa Indica Group] gi|125573470|gb|EAZ14985.1| hypothetical protein OsJ_04920 [Oryza sativa Japonica Group] gi|215697475|dbj|BAG91469.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/169 (42%), Positives = 98/169 (57%), Gaps = 6/169 (3%)

Query: 45  FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRK 104
           FPCPFCY+E+E   IC+HLQEEHCF+ +NAVCPLCA N+G+D   HF VQH+  LKRR+ 
Sbjct: 37  FPCPFCYIEVEVPFICNHLQEEHCFDTRNAVCPLCADNIGRDMGAHFRVQHSHLLKRRKP 96

Query: 105 CLKSGLRNGGSAMLGKELSSFLGSPTIVRGN--APESLPDPLLSPFLCSGTLSDTKGIQK 162
              S      S         F G P  +  N    +  PDPLLS F+CS   +DT     
Sbjct: 97  SRPSSSWPTPS---NNSDPYFEGPPQYMMNNRTYQDPAPDPLLSQFICSMAQTDTNSDNT 153

Query: 163 DDCTNKFSLASDLK-SAGGTLLDDGHEENIEEKMQRATFVQQLIMSTVF 210
           +      +++ D + S   TL DD  +  ++E++QR  FV+++IMST+ 
Sbjct: 154 NTEIAVSAVSHDQRLSQRVTLTDDASKLELKERLQRIEFVKEIIMSTIL 202

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238014610|gb|ACR38340.1| unknown [Zea mays]

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/171 (39%), Positives = 95/171 (55%), Gaps = 10/171 (5%)

Query: 45  FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRK 104
           FPCPFCY+E+E   IC+HLQEEHCF+ +NAVCP+CA NLGKD A HF +QH   LKRR+ 
Sbjct: 43  FPCPFCYIEVEVPFICNHLQEEHCFDTRNAVCPICANNLGKDMAAHFRLQHTHLLKRRKP 102

Query: 105 CLKSGLRNGGSAMLGKELSSFLGSPTIVRGNA---PESLPDPLLSPFLCSGTLSDTKGIQ 161
              S      ++    +++S+       +  +    +  PDPLLS F+CS        I 
Sbjct: 103 YRPSSCPAAATSPATYQVNSYYEEAEPQQHYSRPYKDPAPDPLLSQFICS-----VDAIP 157

Query: 162 KDDCTNKFSLASDLKSAGGTLLDDGHEEN--IEEKMQRATFVQQLIMSTVF 210
            DD   K      L + G T  DD       +EE++QR  F+ +++MST+ 
Sbjct: 158 GDDNAQKDDQRLKLNNKGATASDDDASSKLGLEERLQRIDFLTEILMSTIL 208

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126984|ref|XP_003565167.1| PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 5-like [Brachypodium distachyon]

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 106/174 (60%), Gaps = 9/174 (5%)

Query: 38  DDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHAS 97
           D ++   FPCPFCY+E+E   IC+HLQEEHCF+ +NAVCP+CA NLGK+ + HF VQH+ 
Sbjct: 58  DGELWEYFPCPFCYIEVEMPFICNHLQEEHCFDTRNAVCPICAENLGKNMSAHFRVQHSH 117

Query: 98  SLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDT 157
            LKRR+    S   +        E++S++ +  + +   PE  PDPLLS F+CS   +++
Sbjct: 118 LLKRRKPSKPSSWPSAAHGEEPYEVNSYMMNNRLCQD--PE--PDPLLSQFICSADQTES 173

Query: 158 KGIQKDDCTNKFSLA-SDLKSAGGTLLDDGHEENIEEKMQRATFVQQLIMSTVF 210
           K   +       S A SD++ +G  +     +  +EE++QR  F++++I ST+ 
Sbjct: 174 KSRDRSRRHGGGSSATSDVQRSGQRV----SQLELEERLQRVEFLKEIITSTII 223

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2148528	222	AT5G26990 [Arabidopsis thalian	0.928	0.878	0.316	4.4e-20
TAIR|locus:2078062	223	AT3G05700 [Arabidopsis thalian	0.957	0.901	0.309	5.1e-19
TAIR|locus:2155934	211	HRB1 "HYPERSENSITIVE TO RED AN	0.947	0.943	0.300	4.1e-17
TAIR|locus:2196125	221	AT1G02750 [Arabidopsis thalian	0.980	0.932	0.262	5.4e-15
TAIR|locus:2137819	228	AT4G02200 [Arabidopsis thalian	0.823	0.758	0.256	2.7e-09
TAIR|locus:2083363	234	AT3G06760 [Arabidopsis thalian	0.204	0.183	0.441	1.5e-05

TAIR|locus:2148528 AT5G26990 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 73/231 (31%), Positives = 111/231 (48%)

Query:     1 MDIDFWASRVHSA-KHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFC--YLEIEAH 57
             MD D W+ R+ SA + +     SR  +DN    +E E +DD +  + CPFC  Y +I + 
Sbjct:     1 MDSDSWSDRLASASRRYQLDFLSR--SDNFLGFEEIEGEDDFREEYACPFCSDYFDIVS- 57

Query:    58 MICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAM 117
              +C H+ E+H  + KN VCP+CA  +  D   H  +QHA+  K  RK  +   R G  +M
Sbjct:    58 -LCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRK--RKSRRGGAQSM 114

Query:   118 L---------GKELSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNK 168
             L         G   S F G+   V  ++     DPLLS F+    ++D      D   ++
Sbjct:   115 LSILKREFPDGNFQSLFEGTSRAVSSSSASIAADPLLSSFI--SPMAD------DFFISE 166

Query:   169 FSLASDLKSAGGTLLDDGHEENIE----------EKMQRATFVQQLIMSTV 209
              SL +D  SA  TL     E N+E          EK++++ FVQ ++ S +
Sbjct:   167 SSLCADTSSAKKTLNQSLPERNVEKQSLSAEDHREKLKQSEFVQGILSSMI 217

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=ISS

TAIR|locus:2078062 AT3G05700 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 70/226 (30%), Positives = 112/226 (49%)

Query:     1 MDIDFWASRVHSA-KHFSAVRASRLNTDNHSIVDETEIDDDVKACFPCPFC--YLEIEAH 57
             MD D W+ R+ SA + +     SR  +D     +E + +++ +  F CPFC  Y +I + 
Sbjct:     1 MDSDSWSDRLASATRRYQLAFPSR--SDTFLGFEEIDGEEEFREEFACPFCSDYFDIVS- 57

Query:    58 MICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGS-- 115
              +C H+ E+H  E KN VCP+CA  +G D   H  +QHA+  K  RK  K   R GGS  
Sbjct:    58 -LCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRK-RKP--RRGGSYS 113

Query:   116 --AMLGKEL------SSFLGSPTIVRGNAPESLP-DPLLSPFL---CSGTLSDTKGIQKD 163
               ++L +E       S F GS  IV  ++  ++  DPLLS F+     G  +    I  +
Sbjct:   114 TLSILRREFPDGNFQSLFGGSSCIVSSSSSSNVAADPLLSSFISPIADGFFTTESCISAE 173

Query:   164 DCTNKFSLASDLKSAGGTLLDDGHEENIEEKMQRATFVQQLIMSTV 209
                 K +    L            E++ ++K++R+ FV++L+ ST+
Sbjct:   174 TGPVKKTTIQCLPEQNAKKTSLSAEDH-KQKLKRSEFVRELLSSTI 218

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=ISS

TAIR|locus:2155934 HRB1 "HYPERSENSITIVE TO RED AND BLUE" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 65/216 (30%), Positives = 101/216 (46%)

Query:     1 MDIDFWASRVHSAKHFSAVRASRLNTDNHSI-VDETEIDDDVKACFPCPFCYLEIEAHMI 59
             MD + W   ++    FS+  +SR       + + + E +DD+KA F CPFC  E +   +
Sbjct:     1 MDSNSW---INCPPVFSSSPSSRRYQSRSDLYLGDVEGEDDLKAEFMCPFCADEFDIVGL 57

Query:    60 CSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLK-RRRKCLKSGLRNGGSAML 118
             C H+   H  E KN VCP+C   +G D   H   QH +  K +RR+ L+ G  +     L
Sbjct:    58 CCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITTQHGNVFKVQRRRRLRKGGYSSTYLTL 117

Query:   119 GKEL-----SSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLAS 173
              KEL      S  GS T +  +  +S  DPLLS F+     +    I + D   + S   
Sbjct:   118 KKELREANLQSLGGSSTFIPSSNIDS--DPLLSSFMFKPPSAIP--ITEGDSVAQVSPKD 173

Query:   174 DLKSAGGTLLDDGHEENIEEKMQRATFVQQLIMSTV 209
               KS    +  +      +EK +++ FV+ L+ ST+
Sbjct:   174 TSKSK---IQQESFSNEDQEKAKKSKFVRGLLWSTM 206

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009414 "response to water deprivation" evidence=ISS

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

TAIR|locus:2196125 AT1G02750 [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 57/217 (26%), Positives = 98/217 (45%)

Query:     1 MDIDFWA-SRVHSAKHFSAVRASRLNTDNHSIVDE-TEIDDDVKACFPCPFCYLEIEAHM 58
             M+ D W  S   S++ + +  A++  +  +  ++E  E+DDD+   +PCPFC  + +   
Sbjct:     1 MEDDMWCVSSSGSSRSYRSETAAKYQSGPYQDLEEFEEVDDDIAVEYPCPFCASDYDLVE 60

Query:    59 ICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAML 118
             +C H+ EEH  E  N +CP+C+  +     +H    H   LK  +K  +   R     + 
Sbjct:    61 LCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHHRDVLKSEQK--EMSYRED-PYLS 117

Query:   119 GKELSSFLGS--PTIVRGNAPES-LPDPLLSPFLCSGTL-SDTKGIQKDDCTNKFSLASD 174
              K L   L    P++     P   + D  LS F+ +  L + TK +  D      +   D
Sbjct:   118 DKYLQPHLDELPPSMNHHQHPSKHVSDQFLS-FINNSALPNQTKLVLPDSSVEDKNPIKD 176

Query:   175 LKSAG-GTLLDDGHEENIEEKMQRATFVQQLIMSTVF 210
               +A  GT      + +  EK ++  FVQ L+ S +F
Sbjct:   177 SSAAKEGTSSCPLSDSDKLEKAKKCEFVQGLLSSAMF 213

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009414 "response to water deprivation" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2137819 AT4G02200 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 50/195 (25%), Positives = 79/195 (40%)

Query:    34 ETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNA--------------VCPLC 79
             E E DD++   +PCPFC  + +   +C H+ EEH  +  N               +CP+C
Sbjct:    32 EFEDDDEMAVDYPCPFCSDDYDLVELCHHIDEEHQLDANNGFLHEAVSCKFRLFIICPVC 91

Query:    80 AANLGKDAAEHFMVQHASSLKRRRKCLKSGLRNGGSAMLGKELSSFLGSPTIVRGNAPES 139
             +  +     +H   QH    KR  K       + G+    K L S +  P +   +  +S
Sbjct:    92 SRRVKMHMVDHITTQHRDVFKRLYKDESYSAFSPGTR---KYLQSLIDEP-LSTNHTSKS 147

Query:   140 LPDPLLSPFLCSGTLSDTKGIQKDDCTNKF----SLASDLKSAGGTLLDDGHEENIEEKM 195
             + DPLLS      +   +K +Q D  +       SL  D             +  + EK 
Sbjct:   148 VLDPLLSFIYNPPSPKKSKLVQPDSSSEASMEDNSLIRDSTEKDWESPSPLSDTELLEKA 207

Query:   196 QRATFVQQLIMSTVF 210
             ++  FVQ LI S +F
Sbjct:   208 KKREFVQGLISSAIF 222

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009414 "response to water deprivation" evidence=ISS

TAIR|locus:2083363 AT3G06760 [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query:    33 DETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAV 75
             ++ E +DD+KA F CPFC  + +   +C H+ EEH  E KN V
Sbjct:    35 EDLEGEDDLKAEFICPFCAEDFDIVGLCCHIDEEHPVEAKNGV 77

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XBA5	DI196_ORYSJ	No assigned EC number	0.4188	0.8857	0.8942	yes	no
Q6NM26	DI196_ARATH	No assigned EC number	0.3043	0.9428	0.8918	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00120791 hypothetical protein (208 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
pfam05605	209	pfam05605, Di19, Drought induced 19 protein (Di19)	3e-47

>gnl|CDD|218654 pfam05605, Di19, Drought induced 19 protein (Di19)

 Score =  153 bits (389), Expect = 3e-47
 Identities = 81/214 (37%), Positives = 113/214 (52%), Gaps = 24/214 (11%)

Query: 15  HFSAVRASRLNTDNHS---IVDETEIDDDVKACFPCPFCYLEIEAHMICSHLQEEHCFEM 71
           H SA  + +    + S   + ++ E +D+V+  FPCPFCY + +   +C H+ EEH FE 
Sbjct: 1   HASASASYQRALPSRSDLYLFEDIEGEDEVREEFPCPFCYEDFDIVSLCCHIDEEHPFEA 60

Query: 72  KNAVCPLCAANLGKDAAEHFMVQHASSLK--RRRKCLKSGLRNGGS----AMLGKELS-- 123
           KN VCP+CA  +GKD   H  VQH    K  RRR+     LR GGS    ++L +EL   
Sbjct: 61  KNGVCPVCADRVGKDMVAHITVQHGHLFKMQRRRR-----LRRGGSSSALSLLKRELRDG 115

Query: 124 ---SFLGSPTIVRG-NAPESLPDPLLSPFLCSGTLSDTKGIQKDD-CTNKFSLASDL--- 175
              S LGS  +    NA +S PDPLLS F+CS   +DT    K D  T   + A      
Sbjct: 116 NLQSLLGSSCMSSSSNASDSAPDPLLSSFICSSPSADTSSTSKSDSSTEGSASAKSSDQK 175

Query: 176 KSAGGTLLDDGHEENIEEKMQRATFVQQLIMSTV 209
            S   +      +E +EEK +R+ FVQ L++ST+
Sbjct: 176 LSERNSSDSSLSKEELEEKAKRSEFVQGLLLSTI 209

This family consists of several drought induced 19 (Di19) like proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought. The precise function of Di19 is unknown. Length = 209

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PF14571	105	Di19_C: Stress-induced protein Di19, C-terminal	99.95
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	99.79
KOG1280	381	consensus Uncharacterized conserved protein contai	97.89
KOG2923	67	consensus Uncharacterized conserved protein [Funct	95.04
COG5216	67	Uncharacterized conserved protein [Function unknow	94.32
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	92.48
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	91.86
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	91.63
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	90.81
PLN03086	567	PRLI-interacting factor K; Provisional	90.79
PHA00732	79	hypothetical protein	89.87
smart00531	147	TFIIE Transcription initiation factor IIE.	89.05
PRK09710	64	lar restriction alleviation and modification prote	88.57
KOG1842	505	consensus FYVE finger-containing protein [General	88.29
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	88.23
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	87.99
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	87.5
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	87.44
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	86.95
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	86.64
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	86.29
PF14354	61	Lar_restr_allev: Restriction alleviation protein L	85.82
PF04780	466	DUF629: Protein of unknown function (DUF629); Inte	85.09
PHA00733	128	hypothetical protein	85.01
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	84.28
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	83.74
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	83.21
COG5236	493	Uncharacterized conserved protein, contains RING Z	83.17
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	83.06
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	82.9
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	82.67
PF14255	52	Cys_rich_CPXG: Cysteine-rich CPXCG	82.24
PF14206	78	Cys_rich_CPCC: Cysteine-rich CPCC	81.3
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	80.92

>PF14571 Di19_C: Stress-induced protein Di19, C-terminal

Probab=99.95  E-value=2e-28  Score=190.66  Aligned_cols=93  Identities=32%  Similarity=0.481  Sum_probs=68.3

Q ss_pred             cchhhhh-----hhhhcCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCcccCcccccccccc--ccCCCC----C
Q 028361          115 SAMLGKE-----LSSFLGSPTIVRGNAPESLPDPLLSPFLCSGTLSDTKGIQKDDCTNKFSLASDLK--SAGGTL----L  183 (210)
Q Consensus       115 ~sll~Ke-----lqsllgg~~~s~~~ssn~~pDPLLSsFi~n~~~~~~~~~e~~~s~~~~~~~~~~~--~~~~~~----~  183 (210)
                      +++|+||     ||+||||+++++++++|++|||||||||||+|.++..  +..+....+..+...+  ..++.|    .
T Consensus         2 lsll~kelre~~LQsllGgs~~~~~~ssn~apDPLLSSFI~n~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~s~~   79 (105)
T PF14571_consen    2 LSLLRKELREGYLQSLLGGSRSSSSSSSNSAPDPLLSSFICNFPAPEAE--EPSKSSSSSEEKKSSKKSSSEQNVKSSAD   79 (105)
T ss_pred             cchhhhhhhhhhhhhhcCCCcCCCCCCCCCCCcHHHHHHhcCCCCcccc--ccCCccccccccccccccchhcccccccC
Confidence            5689999     5999999856677899999999999999999998733  2111111111111111  113334    4


Q ss_pred             CCCChhHHHHHHhHhHHHHHHHhhhc
Q 028361          184 DDGHEENIEEKMQRATFVQQLIMSTV  209 (210)
Q Consensus       184 ~~ls~~d~eEr~~R~eFVQgLllSTi  209 (210)
                      ++++++|+|||+||++||||||||||
T Consensus        80 ~~lS~ee~eEk~~RseFVQ~LllSTI  105 (105)
T PF14571_consen   80 SSLSDEEQEEKAQRSEFVQGLLLSTI  105 (105)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence            78999999999999999999999998

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=99.79  E-value=7.9e-20  Score=125.90  Aligned_cols=54  Identities=31%  Similarity=0.711  Sum_probs=52.2

Q ss_pred             ccccCCCCCcchhHHHhHhhhhhccCCCcccccCcccccchhhhHHhhHhhhhc
Q 028361           43 ACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFMVQHA   96 (210)
Q Consensus        43 ~~f~CP~C~e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~~d~i~Hi~~qh~   96 (210)
                      .+|+||||+++||+.+|+.|++++|+.+.+++|||||+.+++.||++||+.+||
T Consensus         1 ~~f~CP~C~~~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~~l~~Hl~~~H~   54 (54)
T PF05605_consen    1 DSFTCPYCGKGFSESSLVEHCEDEHRSESKNVVCPICSSRVTDNLIRHLNSQHR   54 (54)
T ss_pred             CCcCCCCCCCccCHHHHHHHHHhHCcCCCCCccCCCchhhhhhHHHHHHHHhcC
Confidence            369999999999999999999999999999999999999999999999999996

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]

Probab=97.89  E-value=8.3e-06  Score=75.43  Aligned_cols=42  Identities=31%  Similarity=0.729  Sum_probs=39.1

Q ss_pred             cccccCCCCCc-chhHHHhHhhhhhccCCCcccccCcccccch
Q 028361           42 KACFPCPFCYL-EIEAHMICSHLQEEHCFEMKNAVCPLCAANL   83 (210)
Q Consensus        42 ~~~f~CP~C~e-~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v   83 (210)
                      ...|.||||+. +|....+.+|+..+|+.-...+|||||+...
T Consensus        77 ~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~~~~  119 (381)
T KOG1280|consen   77 PQSFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCAANP  119 (381)
T ss_pred             cccccCCcccccccchhHHHHHhhhcCcccCcceeeeccccCc
Confidence            34899999999 9999999999999999999999999999974

>KOG2923 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.04  E-value=0.008  Score=43.58  Aligned_cols=46  Identities=22%  Similarity=0.486  Sum_probs=29.9

Q ss_pred             CccCccccC-ccccccccCCCCCcchhHH--HhHhhhhhccCCCcccccCcccccchh
Q 028361           30 SIVDETEID-DDVKACFPCPFCYLEIEAH--MICSHLQEEHCFEMKNAVCPLCAANLG   84 (210)
Q Consensus        30 ~~~~~~~~d-~d~~~~f~CP~C~e~~d~~--~L~~H~~~eH~~e~~~~vCPvC~~~v~   84 (210)
                      ..|+|++=| +....+|||| ||..|.+.  .|.        .--..+.||-|+-.+.
T Consensus         7 Veiedfe~~~e~~~y~yPCp-CGDrf~It~edL~--------~ge~Va~CpsCSL~I~   55 (67)
T KOG2923|consen    7 VEIEDFEFDEENQTYYYPCP-CGDRFQITLEDLE--------NGEDVARCPSCSLIIR   55 (67)
T ss_pred             EEeecceeccCCCeEEcCCC-CCCeeeecHHHHh--------CCCeeecCCCceEEEE
Confidence            345677634 4456799999 99865543  232        2245688999998754

>COG5216 Uncharacterized conserved protein [Function unknown]

Probab=94.32  E-value=0.016  Score=41.61  Aligned_cols=38  Identities=26%  Similarity=0.550  Sum_probs=25.0

Q ss_pred             ccccccccCCCCCcchhHHHhHhhhhhccCCCcccccCcccccch
Q 028361           39 DDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL   83 (210)
Q Consensus        39 ~d~~~~f~CP~C~e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v   83 (210)
                      ++...+|||| ||.-|++.     +++ -..--+.++||-|.-.|
T Consensus        17 e~~~ftyPCP-CGDRFeIs-----LeD-l~~GE~VArCPSCSLiv   54 (67)
T COG5216          17 EEKTFTYPCP-CGDRFEIS-----LED-LRNGEVVARCPSCSLIV   54 (67)
T ss_pred             CCceEEecCC-CCCEeEEE-----HHH-hhCCceEEEcCCceEEE
Confidence            3456799999 99866553     111 12234568999999875

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=92.48  E-value=0.073  Score=29.11  Aligned_cols=23  Identities=26%  Similarity=0.595  Sum_probs=14.5

Q ss_pred             ccCCCCCc-chhHHHhHhhhhhcc
Q 028361           45 FPCPFCYL-EIEAHMICSHLQEEH   67 (210)
Q Consensus        45 f~CP~C~e-~~d~~~L~~H~~~eH   67 (210)
                      |.||+|+. --+...|..|+...|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            67888887 445667777776654

...

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.86  E-value=0.1  Score=36.52  Aligned_cols=28  Identities=25%  Similarity=0.672  Sum_probs=18.4

Q ss_pred             CcccccCcccccch--hhhHHhhHhhhhcc
Q 028361           70 EMKNAVCPLCAANL--GKDAAEHFMVQHAS   97 (210)
Q Consensus        70 e~~~~vCPvC~~~v--~~d~i~Hi~~qh~~   97 (210)
                      ....+.||+|...+  .+|+-+|+.+.|+.
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            34456999999975  56999999988864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=91.63  E-value=0.12  Score=30.37  Aligned_cols=21  Identities=24%  Similarity=0.608  Sum_probs=18.7

Q ss_pred             cccCCCCCcchhHHHhHhhhh
Q 028361           44 CFPCPFCYLEIEAHMICSHLQ   64 (210)
Q Consensus        44 ~f~CP~C~e~~d~~~L~~H~~   64 (210)
                      ..+||+|+.-|....|-.|+.
T Consensus         2 l~~C~~CgR~F~~~~l~~H~~   22 (25)
T PF13913_consen    2 LVPCPICGRKFNPDRLEKHEK   22 (25)
T ss_pred             CCcCCCCCCEECHHHHHHHHH
Confidence            578999999999999999964

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=90.81  E-value=0.12  Score=29.31  Aligned_cols=24  Identities=25%  Similarity=0.627  Sum_probs=16.6

Q ss_pred             ccCCCCCcchhHHHhHhhhhhccC
Q 028361           45 FPCPFCYLEIEAHMICSHLQEEHC   68 (210)
Q Consensus        45 f~CP~C~e~~d~~~L~~H~~~eH~   68 (210)
                      |.||+|...-....|..|+...|+
T Consensus         1 y~C~~C~y~t~~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTSKSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EESHHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCCHHHHHHHHHhhCc
Confidence            689999873347788888887775

>PLN03086 PRLI-interacting factor K; Provisional

Probab=90.79  E-value=0.23  Score=49.18  Aligned_cols=46  Identities=20%  Similarity=0.399  Sum_probs=35.5

Q ss_pred             ccccCCCCCcchhHHHhHhhhhhccCCCcccccCcccccchh-hhHHhhHhh
Q 028361           43 ACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLG-KDAAEHFMV   93 (210)
Q Consensus        43 ~~f~CP~C~e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~-~d~i~Hi~~   93 (210)
                      .-+.||+|++.|....|-.|....|    +...|| |...+. .++..|++.
T Consensus       452 ~H~~C~~Cgk~f~~s~LekH~~~~H----kpv~Cp-Cg~~~~R~~L~~H~~t  498 (567)
T PLN03086        452 NHVHCEKCGQAFQQGEMEKHMKVFH----EPLQCP-CGVVLEKEQMVQHQAS  498 (567)
T ss_pred             cCccCCCCCCccchHHHHHHHHhcC----CCccCC-CCCCcchhHHHhhhhc
Confidence            3468999999888899999988855    678999 975543 477778763

>PHA00732 hypothetical protein

Probab=89.87  E-value=0.28  Score=36.50  Aligned_cols=43  Identities=26%  Similarity=0.711  Sum_probs=33.1

Q ss_pred             ccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchhhhHHhhHh
Q 028361           45 FPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFM   92 (210)
Q Consensus        45 f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~~d~i~Hi~   92 (210)
                      |+|+.|++.| ....|..|+...|.-    ..|++|...-. .+..|++
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~~----~~C~~CgKsF~-~l~~H~~   45 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHTL----TKCPVCNKSYR-RLNQHFY   45 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccCC----CccCCCCCEeC-Chhhhhc
Confidence            7899999955 678899998754542    26999998766 6777775

>smart00531 TFIIE Transcription initiation factor IIE

Probab=89.05  E-value=0.24  Score=40.32  Aligned_cols=42  Identities=21%  Similarity=0.426  Sum_probs=28.1

Q ss_pred             ccccccccCCCCCcchhHHHhHhhhhhccCCCcccccCcccccchhh
Q 028361           39 DDVKACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGK   85 (210)
Q Consensus        39 ~d~~~~f~CP~C~e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~~   85 (210)
                      +.....|.||.|+.-|+...-....+   +  ...-+||.|...+-.
T Consensus        94 e~~~~~Y~Cp~C~~~y~~~ea~~~~d---~--~~~f~Cp~Cg~~l~~  135 (147)
T smart00531       94 ETNNAYYKCPNCQSKYTFLEANQLLD---M--DGTFTCPRCGEELEE  135 (147)
T ss_pred             ccCCcEEECcCCCCEeeHHHHHHhcC---C--CCcEECCCCCCEEEE
Confidence            34577999999998666544333221   2  344899999988643

>PRK09710 lar restriction alleviation and modification protein; Reviewed

Probab=88.57  E-value=0.15  Score=36.87  Aligned_cols=33  Identities=27%  Similarity=0.564  Sum_probs=22.6

Q ss_pred             cccCCCCCc-chhHHHhHhhhhhccCCCcccccCcccccchhh
Q 028361           44 CFPCPFCYL-EIEAHMICSHLQEEHCFEMKNAVCPLCAANLGK   85 (210)
Q Consensus        44 ~f~CP~C~e-~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~~   85 (210)
                      .-|||||+. .+.+.         |..-..-++|.-|.+....
T Consensus         6 lKPCPFCG~~~~~v~---------~~~g~~~v~C~~CgA~~~~   39 (64)
T PRK09710          6 VKPCPFCGCPSVTVK---------AISGYYRAKCNGCESRTGY   39 (64)
T ss_pred             ccCCCCCCCceeEEE---------ecCceEEEEcCCCCcCccc
Confidence            469999998 55443         2333445999999997443

>KOG1842 consensus FYVE finger-containing protein [General function prediction only]

Probab=88.29  E-value=0.2  Score=48.42  Aligned_cols=35  Identities=29%  Similarity=0.600  Sum_probs=30.5

Q ss_pred             ccccccccCCCCCcchh-HHHhHhhhhhccCCCccc
Q 028361           39 DDVKACFPCPFCYLEIE-AHMICSHLQEEHCFEMKN   73 (210)
Q Consensus        39 ~d~~~~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~   73 (210)
                      ++.+.-|-||+|.++|+ ...|-+|++.+|+.|-..
T Consensus        10 ~~i~egflCPiC~~dl~~~~~L~~H~d~eH~~ed~~   45 (505)
T KOG1842|consen   10 GEILEGFLCPICLLDLPNLSALNDHLDVEHFEEDEK   45 (505)
T ss_pred             chhhhcccCchHhhhhhhHHHHHHHHhhhccccchh
Confidence            56788999999999875 678999999999998764

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.23  E-value=0.22  Score=27.68  Aligned_cols=21  Identities=19%  Similarity=0.621  Sum_probs=13.0

Q ss_pred             ccCCCCCcch-hHHHhHhhhhh
Q 028361           45 FPCPFCYLEI-EAHMICSHLQE   65 (210)
Q Consensus        45 f~CP~C~e~~-d~~~L~~H~~~   65 (210)
                      |.||.|+.-| +...|..|+..
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5677777733 45566666654

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=87.99  E-value=0.16  Score=32.09  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=23.3

Q ss_pred             ccccCCCCCcchhHHHhHhhhhhccCCCcccccCcccccch
Q 028361           43 ACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL   83 (210)
Q Consensus        43 ~~f~CP~C~e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v   83 (210)
                      .+|.||-|+..|++..-.        .+....+||.|...+
T Consensus         4 Y~y~C~~Cg~~fe~~~~~--------~~~~~~~CP~Cg~~~   36 (41)
T smart00834        4 YEYRCEDCGHTFEVLQKI--------SDDPLATCPECGGDV   36 (41)
T ss_pred             EEEEcCCCCCEEEEEEec--------CCCCCCCCCCCCCcc
Confidence            579999999988754321        114567899998854

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=87.50  E-value=0.24  Score=31.18  Aligned_cols=33  Identities=15%  Similarity=0.229  Sum_probs=21.2

Q ss_pred             ccCCCCCcchhHHHhHhhhhhccCCCcccccCcccccch
Q 028361           45 FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL   83 (210)
Q Consensus        45 f~CP~C~e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v   83 (210)
                      +.||.|+..|.+..-.      .+.....+.||.|...+
T Consensus         3 ~~CP~C~~~~~v~~~~------~~~~~~~v~C~~C~~~~   35 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQ------LGANGGKVRCGKCGHVW   35 (38)
T ss_pred             EECCCCCCEEEeCHHH------cCCCCCEEECCCCCCEE
Confidence            6899999866665422      22233467899997653

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=87.44  E-value=0.19  Score=31.22  Aligned_cols=24  Identities=33%  Similarity=0.690  Sum_probs=12.9

Q ss_pred             cCCCCCcchhHHHhHhhhhhccCCCcccccCccccc
Q 028361           46 PCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAA   81 (210)
Q Consensus        46 ~CP~C~e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~   81 (210)
                      +||.|+.++..            .|....|||-|..
T Consensus         4 ~Cp~C~se~~y------------~D~~~~vCp~C~~   27 (30)
T PF08274_consen    4 KCPLCGSEYTY------------EDGELLVCPECGH   27 (30)
T ss_dssp             --TTT-----E------------E-SSSEEETTTTE
T ss_pred             CCCCCCCccee------------ccCCEEeCCcccc
Confidence            79999886655            5567789999974

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=86.95  E-value=0.2  Score=34.98  Aligned_cols=30  Identities=33%  Similarity=0.520  Sum_probs=21.7

Q ss_pred             cccCCCCCcchhHHHhHhhhhhccCCCcccccCcccccc
Q 028361           44 CFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAAN   82 (210)
Q Consensus        44 ~f~CP~C~e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~   82 (210)
                      .|.||-|++.|++.....         .-.+.||.|.+.
T Consensus         2 ~~~CP~CG~~iev~~~~~---------GeiV~Cp~CGae   31 (54)
T TIGR01206         2 QFECPDCGAEIELENPEL---------GELVICDECGAE   31 (54)
T ss_pred             ccCCCCCCCEEecCCCcc---------CCEEeCCCCCCE
Confidence            589999999887654321         225789999876

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=86.64  E-value=0.35  Score=34.91  Aligned_cols=48  Identities=23%  Similarity=0.582  Sum_probs=14.4

Q ss_pred             cCCCCCcc-hhHHHhHhhhhhccCCCcc---------------------cccCcccccch--hhhHHhhHhh
Q 028361           46 PCPFCYLE-IEAHMICSHLQEEHCFEMK---------------------NAVCPLCAANL--GKDAAEHFMV   93 (210)
Q Consensus        46 ~CP~C~e~-~d~~~L~~H~~~eH~~e~~---------------------~~vCPvC~~~v--~~d~i~Hi~~   93 (210)
                      .|+||+.. -++..|..|+...|.+...                     .-.|++|....  ...+..||+.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHH
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcC
Confidence            49999885 4578899999999987432                     12399999985  4588899984

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.29  E-value=0.21  Score=32.58  Aligned_cols=34  Identities=26%  Similarity=0.509  Sum_probs=21.8

Q ss_pred             ccCCCCCcchhHHHhHhhhhhccCCCcccccCcccccchhhhHH
Q 028361           45 FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAA   88 (210)
Q Consensus        45 f~CP~C~e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~~d~i   88 (210)
                      |.||.|+... +      +.|   ......||+.|..-+..+.+
T Consensus         1 m~Cp~Cg~~~-~------~~D---~~~g~~vC~~CG~Vl~e~~i   34 (43)
T PF08271_consen    1 MKCPNCGSKE-I------VFD---PERGELVCPNCGLVLEENII   34 (43)
T ss_dssp             ESBTTTSSSE-E------EEE---TTTTEEEETTT-BBEE-TTB
T ss_pred             CCCcCCcCCc-e------EEc---CCCCeEECCCCCCEeecccc
Confidence            6899998743 2      111   44566799999887776655

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>PF14354 Lar_restr_allev: Restriction alleviation protein Lar

Probab=85.82  E-value=0.23  Score=34.13  Aligned_cols=31  Identities=29%  Similarity=0.682  Sum_probs=19.0

Q ss_pred             cccCCCCCc-chhHHHhHhhhhhccCCCc---ccccCccccc
Q 028361           44 CFPCPFCYL-EIEAHMICSHLQEEHCFEM---KNAVCPLCAA   81 (210)
Q Consensus        44 ~f~CP~C~e-~~d~~~L~~H~~~eH~~e~---~~~vCPvC~~   81 (210)
                      ..||||||. .+-+..       ....+.   ..+.|..|..
T Consensus         3 LkPCPFCG~~~~~~~~-------~~~~~~~~~~~V~C~~Cga   37 (61)
T PF14354_consen    3 LKPCPFCGSADVLIRQ-------DEGFDYGMYYYVECTDCGA   37 (61)
T ss_pred             CcCCCCCCCcceEeec-------ccCCCCCCEEEEEcCCCCC
Confidence            468999986 443332       122221   5577999977

>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function

Probab=85.09  E-value=0.59  Score=45.36  Aligned_cols=51  Identities=24%  Similarity=0.312  Sum_probs=36.9

Q ss_pred             ccccccCCCCCc-chhHHHhHhhhhhccCCCcccccCcccccchhhhHHhhH
Q 028361           41 VKACFPCPFCYL-EIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHF   91 (210)
Q Consensus        41 ~~~~f~CP~C~e-~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~~d~i~Hi   91 (210)
                      -+.--.||+|.+ -.|..++..|+..+|+..-.+-.=++...+++.+-++.|
T Consensus        54 sWrFWiCp~CskkF~d~~~~~~H~~~eH~~~l~P~lqs~lPqrId~~w~e~I  105 (466)
T PF04780_consen   54 SWRFWICPRCSKKFSDAESCLSHMEQEHPAGLKPKLQSVLPQRIDDDWAEMI  105 (466)
T ss_pred             ceeEeeCCcccceeCCHHHHHHHHHHhhhhhcChhhhhhcCcccCHHHHHHH
Confidence            345678999998 899999999999999998766333344445554444444

A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.

>PHA00733 hypothetical protein

Probab=85.01  E-value=1.2  Score=35.82  Aligned_cols=50  Identities=20%  Similarity=0.622  Sum_probs=36.0

Q ss_pred             ccccCCCCCcchh-HHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhhhc
Q 028361           43 ACFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (210)
Q Consensus        43 ~~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~qh~   96 (210)
                      ..|.|+.|+..|. ...|..|..- |   ..+..|++|....  ...+..|+.-.|+
T Consensus        72 kPy~C~~Cgk~Fss~s~L~~H~r~-h---~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         72 SPYVCPLCLMPFSSSVSLKQHIRY-T---EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCccCCCCCCcCCCHHHHHHHHhc-C---CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            3589999999655 4567788763 2   1346999998874  4488899886665

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=84.28  E-value=0.29  Score=42.35  Aligned_cols=50  Identities=20%  Similarity=0.347  Sum_probs=30.5

Q ss_pred             ccccCCCCCcchhHHHhHh--------------hhhhccCCCcccccCcccccchhhhHHhhHh
Q 028361           43 ACFPCPFCYLEIEAHMICS--------------HLQEEHCFEMKNAVCPLCAANLGKDAAEHFM   92 (210)
Q Consensus        43 ~~f~CP~C~e~~d~~~L~~--------------H~~~eH~~e~~~~vCPvC~~~v~~d~i~Hi~   92 (210)
                      -++.||+|+..|....+..              |-.+.-|+==...|||-|.---......+++
T Consensus         4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F~~l~   67 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDFEKLS   67 (214)
T ss_pred             CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccccccccCC
Confidence            3689999999998764433              3233333333457899998764443333444

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=83.74  E-value=0.51  Score=40.85  Aligned_cols=47  Identities=19%  Similarity=0.594  Sum_probs=29.6

Q ss_pred             ccccccCCCCCcchh--HHHhHhhh-----hhccC--------------CCcccccCcccccchhhhH
Q 028361           41 VKACFPCPFCYLEIE--AHMICSHL-----QEEHC--------------FEMKNAVCPLCAANLGKDA   87 (210)
Q Consensus        41 ~~~~f~CP~C~e~~d--~~~L~~H~-----~~eH~--------------~e~~~~vCPvC~~~v~~d~   87 (210)
                      ....|.||.|.+.+.  +...|-|+     -...-              ...+...||+|...++.+-
T Consensus        15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~   82 (193)
T PLN03208         15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT   82 (193)
T ss_pred             CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence            446799999987443  44567772     22211              0223468999999987643

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=83.21  E-value=0.99  Score=41.11  Aligned_cols=38  Identities=21%  Similarity=0.590  Sum_probs=28.6

Q ss_pred             ccccccCCCCCc-chhHHHhHhhhhhccCCCcccccCcccccc
Q 028361           41 VKACFPCPFCYL-EIEAHMICSHLQEEHCFEMKNAVCPLCAAN   82 (210)
Q Consensus        41 ~~~~f~CP~C~e-~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~   82 (210)
                      .+..|.||+|++ ...+..|.-||-. |..   .-+|+||.+.
T Consensus       158 s~ka~~C~~C~K~YvSmpALkMHirT-H~l---~c~C~iCGKa  196 (279)
T KOG2462|consen  158 SKKAFSCKYCGKVYVSMPALKMHIRT-HTL---PCECGICGKA  196 (279)
T ss_pred             ccccccCCCCCceeeehHHHhhHhhc-cCC---Cccccccccc
Confidence            377899999998 8888899988866 552   4467777665

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=83.17  E-value=1.8  Score=41.04  Aligned_cols=62  Identities=21%  Similarity=0.351  Sum_probs=45.6

Q ss_pred             ccccccCCCCCc-chhHHHhHhhhhhccCCCcccccCcccccc-------------------------------hhh---
Q 028361           41 VKACFPCPFCYL-EIEAHMICSHLQEEHCFEMKNAVCPLCAAN-------------------------------LGK---   85 (210)
Q Consensus        41 ~~~~f~CP~C~e-~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~-------------------------------v~~---   85 (210)
                      ..---.|-||.. =||-..|..||.+.|-      .|-||+..                               +|+   
T Consensus       217 FKGHP~C~FC~~~FYdDDEL~~HcR~~HE------~ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy~ct~qtc~~~k~~v  290 (493)
T COG5236         217 FKGHPLCIFCKIYFYDDDELRRHCRLRHE------ACHICDMVGPIRYQYFKSYEDLEAHFRNAHYCCTFQTCRVGKCYV  290 (493)
T ss_pred             cCCCchhhhccceecChHHHHHHHHhhhh------hhhhhhccCccchhhhhCHHHHHHHhhcCceEEEEEEEecCcEEE
Confidence            455667999988 7899999999998774      46777653                               222   


Q ss_pred             -----hHHhhHhhhhcchhhhhhccccC
Q 028361           86 -----DAAEHFMVQHASSLKRRRKCLKS  108 (210)
Q Consensus        86 -----d~i~Hi~~qh~~~~Krr~r~rk~  108 (210)
                           .+..||+..|+..+|..-+++.+
T Consensus       291 f~~~~el~~h~~~~h~~~~~~~~~~~~~  318 (493)
T COG5236         291 FPYHTELLEHLTRFHKVNARLSEIPRPG  318 (493)
T ss_pred             eccHHHHHHHHHHHhhcccccCcCCCCc
Confidence                 67888888888888766555533

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=83.06  E-value=0.92  Score=41.32  Aligned_cols=52  Identities=17%  Similarity=0.334  Sum_probs=28.7

Q ss_pred             ccccccCCCCCc-chhHHHhHhhhhhccCCCc-ccccCcccccc-hhh-hHHhhHh
Q 028361           41 VKACFPCPFCYL-EIEAHMICSHLQEEHCFEM-KNAVCPLCAAN-LGK-DAAEHFM   92 (210)
Q Consensus        41 ~~~~f~CP~C~e-~~d~~~L~~H~~~eH~~e~-~~~vCPvC~~~-v~~-d~i~Hi~   92 (210)
                      ....|.||-|+. .=...+|-.|-+..=+.+. +.-.|++|.+- |.+ -+-.||+
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHir  182 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIR  182 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhh
Confidence            345677777776 4455567777666334443 33557777664 333 3444554

>smart00504 Ubox Modified RING finger domain

Probab=82.90  E-value=1.2  Score=30.10  Aligned_cols=33  Identities=18%  Similarity=0.123  Sum_probs=22.7

Q ss_pred             CCcchhHHHhHhhhhhccCCCcccccCcccccchhh-hHHh
Q 028361           50 CYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGK-DAAE   89 (210)
Q Consensus        50 C~e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~~-d~i~   89 (210)
                      ||.-|+...+..++..       +..||+|...++. |++.
T Consensus        19 ~G~v~~~~~i~~~~~~-------~~~cP~~~~~~~~~~l~~   52 (63)
T smart00504       19 SGQTYERRAIEKWLLS-------HGTDPVTGQPLTHEDLIP   52 (63)
T ss_pred             CCCEEeHHHHHHHHHH-------CCCCCCCcCCCChhhcee
Confidence            3455777777777755       4689999988754 4443

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=82.67  E-value=0.42  Score=31.91  Aligned_cols=31  Identities=23%  Similarity=0.519  Sum_probs=22.3

Q ss_pred             ccccCCCCCcchhHHHhHhhhhhccCCCcccccCccccc
Q 028361           43 ACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAA   81 (210)
Q Consensus        43 ~~f~CP~C~e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~   81 (210)
                      .+|.|+-|+..|++.   ....+     .....||.|..
T Consensus         4 Yey~C~~Cg~~fe~~---~~~~~-----~~~~~CP~Cg~   34 (52)
T TIGR02605         4 YEYRCTACGHRFEVL---QKMSD-----DPLATCPECGG   34 (52)
T ss_pred             EEEEeCCCCCEeEEE---EecCC-----CCCCCCCCCCC
Confidence            579999999988853   12222     35578999997

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>PF14255 Cys_rich_CPXG: Cysteine-rich CPXCG

Probab=82.24  E-value=0.46  Score=32.96  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=20.6

Q ss_pred             ccCCCCCcchhHHHhHhhhhhccCCCcccccCcccccch
Q 028361           45 FPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL   83 (210)
Q Consensus        45 f~CP~C~e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v   83 (210)
                      +.|||||+.+++.  .+.-..   ...+.-=|+||-..+
T Consensus         1 i~CPyCge~~~~~--iD~s~~---~Q~yiEDC~vCC~PI   34 (52)
T PF14255_consen    1 IQCPYCGEPIEIL--IDPSAG---DQEYIEDCQVCCRPI   34 (52)
T ss_pred             CCCCCCCCeeEEE--EecCCC---CeeEEeehhhcCCcc
Confidence            4799999977763  232222   222334599998764

>PF14206 Cys_rich_CPCC: Cysteine-rich CPCC

Probab=81.30  E-value=0.5  Score=35.38  Aligned_cols=26  Identities=31%  Similarity=0.826  Sum_probs=16.3

Q ss_pred             cccCCCCCc-chhHHHhHhhhhhccCCCcccccCcccc
Q 028361           44 CFPCPFCYL-EIEAHMICSHLQEEHCFEMKNAVCPLCA   80 (210)
Q Consensus        44 ~f~CP~C~e-~~d~~~L~~H~~~eH~~e~~~~vCPvC~   80 (210)
                      .|+||-|+. -|+..+-           ..--|||||-
T Consensus         1 K~~CPCCg~~Tl~~~~~-----------~~ydIC~VC~   27 (78)
T PF14206_consen    1 KYPCPCCGYYTLEERGE-----------GTYDICPVCF   27 (78)
T ss_pred             CccCCCCCcEEeccCCC-----------cCceECCCCC
Confidence            379999976 5543321           1123999996

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.92  E-value=0.99  Score=38.89  Aligned_cols=46  Identities=20%  Similarity=0.649  Sum_probs=27.9

Q ss_pred             cccccCCCCCcchhHH----HhHhhhhhccCC---CcccccCcccccchhhhH
Q 028361           42 KACFPCPFCYLEIEAH----MICSHLQEEHCF---EMKNAVCPLCAANLGKDA   87 (210)
Q Consensus        42 ~~~f~CP~C~e~~d~~----~L~~H~~~eH~~---e~~~~vCPvC~~~v~~d~   87 (210)
                      .+.|.||.|-..+...    .=|=|+-=.-|.   -.+..+||+|.++|+.-.
T Consensus       129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~  181 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ  181 (187)
T ss_pred             ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence            4679999997655433    334443222222   124578999999987643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	97.26
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	97.22
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	96.55
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	96.42
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	96.4
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	96.28
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	96.22
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	96.14
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	96.06
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	96.01
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	95.92
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	95.81
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	95.56
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	95.54
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	95.51
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	95.48
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	95.43
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	95.39
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	95.36
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	95.24
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	95.22
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	95.2
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	95.19
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	95.16
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	95.05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	95.03
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	94.96
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	94.89
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	94.82
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	94.73
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	94.43
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	94.19
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	94.04
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	93.82
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	93.8
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	93.18
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	93.15
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	92.92
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	92.81
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	92.74
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	92.68
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	92.65
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	92.58
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	92.49
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	92.49
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	92.33
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	92.18
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	92.15
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	92.02
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.01
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.96
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	91.94
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.75
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.75
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	91.73
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.69
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	91.53
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	91.51
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	91.43
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	91.41
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	91.31
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	91.2
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	91.12
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	91.1
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	91.1
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	91.09
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	91.04
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	90.92
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	90.91
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.86
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	90.8
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.8
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	90.76
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	90.74
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.74
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	90.66
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.54
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	90.46
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	90.4
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	90.38
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	90.3
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	90.29
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	90.28
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.21
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	90.15
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	90.13
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	90.13
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	90.13
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	90.11
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	90.11
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	90.06
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.8
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	89.76
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	89.75
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.63
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.45
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.45
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	89.4
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	89.36
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	89.25
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	89.24
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	89.16
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.13
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.89
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	88.85
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	88.31
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	88.17
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.87
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	87.68
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.67
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	87.46
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	87.31
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	87.19
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	87.01
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	86.75
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	86.75
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.72
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.63
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	86.56
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	86.4
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	85.95
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	85.86
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	85.54
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	85.47
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	84.35
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	84.28
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	84.02
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	83.88
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	83.84
2ect_A	78	Ring finger protein 126; metal binding protein, st	83.82
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	83.69
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	83.59
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	83.51
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	83.16
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	82.39
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	81.55
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	81.5
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	81.18
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	81.12
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.94
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	80.84
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	80.53
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	80.41
2epa_A	72	Krueppel-like factor 10; transforming growth facto	80.08

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.26  E-value=0.00019  Score=48.91  Aligned_cols=54  Identities=20%  Similarity=0.452  Sum_probs=44.8

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhhhcc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHAS   97 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~qh~~   97 (210)
                      .|.|++|+..| ....|..|+...|.-+.+.-.|++|....  ..++..|+...|+.
T Consensus        15 ~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A           15 PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            49999999955 56889999987888777888999999874  44899999988864

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=97.22  E-value=0.00024  Score=46.75  Aligned_cols=54  Identities=20%  Similarity=0.483  Sum_probs=44.5

Q ss_pred             ccccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhc
Q 028361           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        43 ~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~   96 (210)
                      ..|.|+.|+..| ....|..|+...|....+.-.|++|.....  .++..|+...|+
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            459999999966 467899999887866677889999998754  489999998886

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=96.55  E-value=0.0017  Score=41.22  Aligned_cols=51  Identities=20%  Similarity=0.311  Sum_probs=38.5

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhhhc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~qh~   96 (210)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+...|+
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRT-HTG-EKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHH-HHC-CCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CccCCCCcchhCChHHHHHHHHH-cCC-CCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            58999999955 56789999876 543 3557899999874  4589999988774

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.42  E-value=0.0027  Score=44.11  Aligned_cols=50  Identities=18%  Similarity=0.355  Sum_probs=22.5

Q ss_pred             ccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhc
Q 028361           45 FPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        45 f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~   96 (210)
                      |.|++|+..| ....|..|+.. |.. .+.-.|++|.....  .++..|+...|+
T Consensus         8 ~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   60 (95)
T 2yt9_A            8 VACEICGKIFRDVYHLNRHKLS-HSG-EKPYSCPVCGLRFKRKDRMSYHVRSHDG   60 (95)
T ss_dssp             EECSSSCCEESSSHHHHHHHHH-SCS-SCSEECSSSCCEESCHHHHHHHHHHHCC
T ss_pred             eECCCCCCccCChHHHHHHHHh-cCC-CCCCcCCCCCCccCCHHHHHHHHHHhcC
Confidence            5555555533 23445555543 222 23345555554422  245555554443

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.40  E-value=0.0028  Score=42.18  Aligned_cols=53  Identities=17%  Similarity=0.319  Sum_probs=41.3

Q ss_pred             ccccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhcc
Q 028361           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHAS   97 (210)
Q Consensus        43 ~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~~   97 (210)
                      ..|.|+.|+..| ....|..|+.. |.. .+.-.|++|.....  .++..|+...|+.
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C~~~f~~~~~L~~H~~~h~~~   63 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHERI-HCT-DRPFKCNYCSFDTKQPSNLSKHMKKFHGD   63 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGG-GCC-SCSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH-cCC-CCCEeCCCCCCccCCHHHHHHHHHHHhCC
Confidence            459999999955 46779999876 654 35679999999754  4899999887764

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.28  E-value=0.0032  Score=45.75  Aligned_cols=50  Identities=20%  Similarity=0.397  Sum_probs=40.2

Q ss_pred             cccCCCCCcch--hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhc
Q 028361           44 CFPCPFCYLEI--EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        44 ~f~CP~C~e~~--d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~   96 (210)
                      .|.|+.|+..|  ....|..|+.. |  ..+.-.|++|.....  .++..|++.-|.
T Consensus        34 ~~~C~~C~k~F~~~~~~L~~H~~~-h--~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           34 SVSCPTCQAVGRKTIEGLKKHMEN-C--KQEMFTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             CEECTTTCSCEESSHHHHHHHHHH-H--CCCCCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             CcCCCCCCCCcccCHHHHHHHHHH-H--CCCCeECCCCCCeeCCHHHHHHHhHHhcC
Confidence            59999999988  78899999865 6  567789999998754  488999554454

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.22  E-value=0.0011  Score=47.61  Aligned_cols=54  Identities=17%  Similarity=0.268  Sum_probs=41.8

Q ss_pred             ccccCCCCCcch--hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhcc
Q 028361           43 ACFPCPFCYLEI--EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHAS   97 (210)
Q Consensus        43 ~~f~CP~C~e~~--d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~~   97 (210)
                      ..|.|++|+..|  ....|..|+.. |....+.-.|++|.....  .++..|+...|+.
T Consensus        23 ~~~~C~~C~k~f~~~~~~L~~H~~~-h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~   80 (98)
T 2gqj_A           23 GEAVCPTCNVVTRKTLVGLKKHMEV-CQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA   80 (98)
T ss_dssp             SCCCCTTTCCCCSSCSHHHHHHHHH-HHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCS
T ss_pred             CCcCCCCCCCChhhhHHHHHHHHHH-HcCCCCCEECCCCCCccCCHHHHHHHHHHHcCC
Confidence            359999999977  57889999866 443345679999998754  4899999877754

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.14  E-value=0.0039  Score=42.36  Aligned_cols=54  Identities=17%  Similarity=0.324  Sum_probs=41.3

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCC--cccccCcccccch--hhhHHhhHhhhhcc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFE--MKNAVCPLCAANL--GKDAAEHFMVQHAS   97 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e--~~~~vCPvC~~~v--~~d~i~Hi~~qh~~   97 (210)
                      .|.|++|+..| ....|..|+...|...  .+.-.|++|....  ..++..|+...|+.
T Consensus        15 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~   73 (86)
T 1x6h_A           15 PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP   73 (86)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCC
Confidence            49999999855 5667899998766554  2668999999874  34899999876654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.06  E-value=0.0049  Score=41.27  Aligned_cols=52  Identities=15%  Similarity=0.294  Sum_probs=39.4

Q ss_pred             ccccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhc
Q 028361           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        43 ~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~   96 (210)
                      ..|.|++|+..| ....|..|+.. |.. .+.-.|++|.....  .++..|+.+.++
T Consensus        13 k~~~C~~C~k~f~~~~~L~~H~~~-h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~   67 (72)
T 1x6e_A           13 KPYGCVECGKAFSRSSILVQHQRV-HTG-EKPYKCLECGKAFSQNSGLINHQRIHTS   67 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHG-GGC-SCCEECSSSCCEESSHHHHHHHHHHHHS
T ss_pred             CCccCCCCCCccCCHHHHHHHHHh-cCC-CCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            359999999965 56778999875 543 45679999998754  489999986554

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=96.01  E-value=0.0054  Score=38.77  Aligned_cols=50  Identities=16%  Similarity=0.430  Sum_probs=38.1

Q ss_pred             ccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhc
Q 028361           45 FPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        45 f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~   96 (210)
                      |.|+.|+..| ....|..|+.. |.. .+.-.|++|.....  .++..|+...|+
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRT-HTD-VRPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH-TSS-CCCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CcCCCCcCcCCCHHHHHHHHHh-cCC-CCCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            7899999965 56779999876 543 45678999998744  488999876554

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.92  E-value=0.004  Score=41.20  Aligned_cols=48  Identities=25%  Similarity=0.461  Sum_probs=38.5

Q ss_pred             ccccCCCCCcchhHHHhHhhhhhccCCCcccccCc-ccccch--hhhHHhhHhh
Q 028361           43 ACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCP-LCAANL--GKDAAEHFMV   93 (210)
Q Consensus        43 ~~f~CP~C~e~~d~~~L~~H~~~eH~~e~~~~vCP-vC~~~v--~~d~i~Hi~~   93 (210)
                      -.|+|++|+..|....|..|+..   ...+...|+ +|....  ..++..|+..
T Consensus         9 ~~~~C~~C~k~f~~~~L~~H~~~---~~~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A            9 RTQPCTYCTKEFVFDTIQSHQYQ---CPRLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             CEEECSSSCCEEEHHHHHHHHHH---CSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             CCeeccccCCccCHHHHHHHHHH---cCCcCccCCcccCcccccHHHHHHHHHh
Confidence            46999999998888889999875   445778999 999863  3488888864

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=95.81  E-value=0.0078  Score=38.48  Aligned_cols=51  Identities=22%  Similarity=0.370  Sum_probs=38.5

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~   96 (210)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++|.....  .++..|++..|.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRS-HTN-EKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT-TTS-SCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             cCcCCCCccccCCHHHHHHHHHH-hCC-CCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            48999999966 56789999876 644 35678999999754  488899865554

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=95.56  E-value=0.015  Score=44.03  Aligned_cols=57  Identities=18%  Similarity=0.279  Sum_probs=43.8

Q ss_pred             cccccccCCCCCcch-hHHHhHhhhhhccCCCccc-------ccCcccccchh--hhHHhhHhhhhc
Q 028361           40 DVKACFPCPFCYLEI-EAHMICSHLQEEHCFEMKN-------AVCPLCAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        40 d~~~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~-------~vCPvC~~~v~--~d~i~Hi~~qh~   96 (210)
                      +....|+|+.|+..| ....|..|+...|..+...       -.|++|.....  .++..|+...++
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   87 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG   87 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHC
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCC
Confidence            455689999999966 5778999998888876432       47999998753  488999986554

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=95.54  E-value=0.01  Score=43.75  Aligned_cols=51  Identities=24%  Similarity=0.618  Sum_probs=39.5

Q ss_pred             ccccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhcc
Q 028361           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHAS   97 (210)
Q Consensus        43 ~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~~   97 (210)
                      ..|.|++|+..| ....|..|+.. |   .++-.|++|.....  .++..|+...||.
T Consensus        73 ~~~~C~~C~k~f~~~~~l~~H~~~-H---~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           73 SQFVCPLCLMPFSSSVSLKQHIRY-T---EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             CSEECTTTCCEESSHHHHHHHHHH-T---CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCeECCCCCcccCCHhHHHHHHHH-C---CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            359999999965 45678899865 5   45569999998753  4899999988875

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.51  E-value=0.0033  Score=43.78  Aligned_cols=48  Identities=27%  Similarity=0.445  Sum_probs=39.6

Q ss_pred             ccccCCCCCcchhHHHhHhhhhhccCCCcccccCcccccchh-hhHHhhHhh
Q 028361           43 ACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLG-KDAAEHFMV   93 (210)
Q Consensus        43 ~~f~CP~C~e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~-~d~i~Hi~~   93 (210)
                      -.+.|+||+..|-...|-.|.  .|+- .++..||.|...+. .+|..|+..
T Consensus        16 r~~~C~~C~~~~~~~~L~~H~--~~c~-~~~~~C~~C~~~~~~~~l~~H~~~   64 (75)
T 2d9k_A           16 RLAVCQHCDLELSILKLKEHE--DYCG-ARTELCGNCGRNVLVKDLKTHPEV   64 (75)
T ss_dssp             CCEECSSSCCEECHHHHHHHH--HHHH-HCEEECSSSCCEEETTGGGTHHHH
T ss_pred             cccCCcccChHhhHHHHHHHH--hHcC-CCceEcccCCCcCcHHHHHHHHHH
Confidence            469999999999999999997  4654 57789999998754 488888874

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.48  E-value=0.021  Score=39.60  Aligned_cols=56  Identities=18%  Similarity=0.268  Sum_probs=41.5

Q ss_pred             ccccccCCCCCcch-hHHHhHhhhhhccCCCccc-------ccCcccccchh--hhHHhhHhhhhc
Q 028361           41 VKACFPCPFCYLEI-EAHMICSHLQEEHCFEMKN-------AVCPLCAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        41 ~~~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~-------~vCPvC~~~v~--~d~i~Hi~~qh~   96 (210)
                      ....|+|+.|+..| ....|..|+...|.-+...       -.|++|.....  .++..|+.+.++
T Consensus        22 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~   87 (95)
T 2ej4_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG   87 (95)
T ss_dssp             SCSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHT
T ss_pred             CcCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCC
Confidence            34568899999966 5678999987767765321       68999998754  489999986544

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.43  E-value=0.012  Score=39.71  Aligned_cols=52  Identities=17%  Similarity=0.291  Sum_probs=39.5

Q ss_pred             ccccCCCCCcchh-HHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhhhc
Q 028361           43 ACFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (210)
Q Consensus        43 ~~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~qh~   96 (210)
                      ..|.|+.|+..|. ...|..|+.. |.. .+.-.|++|....  ..++..|+...++
T Consensus        17 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~   71 (77)
T 2cot_A           17 RRYKCDECGKSFSHSSDLSKHRRT-HTG-EKPYKCDECGKAFIQRSHLIGHHRVHTG   71 (77)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTT-TCC-SCSEECSSSCCEESSHHHHHHHGGGSCC
T ss_pred             CCEECCCCCcccCCHHHHHHHHHH-cCC-CcCeeCCCCCCccCCHHHHHHHHHHhCC
Confidence            4699999999664 6789999865 544 3567999999874  3489999876554

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.39  E-value=0.0091  Score=41.36  Aligned_cols=54  Identities=19%  Similarity=0.425  Sum_probs=41.8

Q ss_pred             ccccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhc
Q 028361           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        43 ~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~   96 (210)
                      ..|.|+.|+..| ....|..|+...|....+.-.|++|...-.  .++..|+...|+
T Consensus        34 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   90 (95)
T 2yt9_A           34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS   90 (95)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTSC
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHHHhcC
Confidence            359999999955 567899999775544457889999998754  489999976665

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=95.36  E-value=0.0094  Score=39.94  Aligned_cols=50  Identities=18%  Similarity=0.374  Sum_probs=27.2

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhh
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQH   95 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh   95 (210)
                      .|.|++|+..| ....|..|+.. |.. .+.-.|++|.....  .++..|+...+
T Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A           29 PYPCQYCGKRFHQKSDMKKHTFI-HTG-EKPHKCQVCGKAFSQSSNLITHSRKHT   81 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HHT-CCCEECTTTSCEESSHHHHHHHHHHHC
T ss_pred             CeeCCcCChhhCCHHHHHHHHHH-hcC-CCCCcCCCcchhhCChHHHHHHHHhhC
Confidence            36677776644 45556666654 322 23456777666532  35666665443

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.24  E-value=0.011  Score=41.07  Aligned_cols=51  Identities=16%  Similarity=0.307  Sum_probs=30.9

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~   96 (210)
                      .|.|++|+..| ....|..|+.. |.. .+.-.|++|.....  .++..|+...++
T Consensus         8 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   61 (96)
T 2dmd_A            8 PHKCEVCGKCFSRKDKLKTHMRC-HTG-VKPYKCKTCDYAAADSSSLNKHLRIHSD   61 (96)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGG-CCC-CCSEECSSSCCEESSHHHHHHHHHHSCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHh-cCC-CCCEeCCCCCCccCCHHHHHHHHHHhCC
Confidence            47777777755 45567777764 322 34456777776533  367777765443

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.22  E-value=0.018  Score=41.49  Aligned_cols=53  Identities=15%  Similarity=0.300  Sum_probs=33.0

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccC-CCcccccCcccccchh--hhHHhhHhhhhc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHC-FEMKNAVCPLCAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~-~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~   96 (210)
                      .|.|++|+..| ....|..|+...|. ...+.-.|++|.....  .++..|+...++
T Consensus        35 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (124)
T 2dlq_A           35 PFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG   91 (124)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             CeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCC
Confidence            47788887743 56677777765432 2334567888877633  367777765544

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=95.20  E-value=0.022  Score=40.26  Aligned_cols=53  Identities=19%  Similarity=0.392  Sum_probs=37.4

Q ss_pred             cccccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhc
Q 028361           42 KACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        42 ~~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~   96 (210)
                      ...|.|++|+..| ....|..|+.. |.. .+.-.|++|.....  .++..|+...++
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   70 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHERT-HTD-ERPYTCDICHKAFRRQDHLRDHRYIHSK   70 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHHH-HCC-SCCCBCSSSCCBCSCHHHHHHHGGGSCC
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHH-cCC-CCCcCCCCccchhCCHHHHHHHHHHhCC
Confidence            4468999998865 46678888865 432 35578999988743  478888876554

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.19  E-value=0.0084  Score=40.47  Aligned_cols=54  Identities=17%  Similarity=0.359  Sum_probs=40.5

Q ss_pred             ccccCCCCCcch-hHHHhHhhhhhccCC--CcccccCcccccchh--hhHHhhHhhhhcc
Q 028361           43 ACFPCPFCYLEI-EAHMICSHLQEEHCF--EMKNAVCPLCAANLG--KDAAEHFMVQHAS   97 (210)
Q Consensus        43 ~~f~CP~C~e~~-d~~~L~~H~~~eH~~--e~~~~vCPvC~~~v~--~d~i~Hi~~qh~~   97 (210)
                      -.|.|++|+..| ....|..|+.. |..  ..+.-.|++|.....  .++..|+...|..
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~-h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            6 SGLQCEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH-HHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTT
T ss_pred             cCeECCCCCCeeCCHHHHHHHHHH-hhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCC
Confidence            359999999965 46778999865 443  246679999998754  4899999766754

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=95.16  E-value=0.023  Score=37.92  Aligned_cols=53  Identities=19%  Similarity=0.327  Sum_probs=39.9

Q ss_pred             cccccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhhhc
Q 028361           42 KACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (210)
Q Consensus        42 ~~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~qh~   96 (210)
                      ...|.|+.|+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+...++
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKTV-HTG-EKPYRCNICGAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHHH-HCC-CCSEECTTTCCEESCHHHHHHHHHHHCC
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHH-cCC-CCCEECCCCCchhCCHHHHHHHHHhcCC
Confidence            4569999999966 56788999865 543 3557899999874  3489999886544

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=95.05  E-value=0.015  Score=39.78  Aligned_cols=49  Identities=18%  Similarity=0.532  Sum_probs=25.9

Q ss_pred             ccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhh
Q 028361           45 FPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQH   95 (210)
Q Consensus        45 f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh   95 (210)
                      |.|++|+..| ....|..|+.. |.. .+.-.|++|.....  .++..|+.+.+
T Consensus        35 ~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~H~   86 (90)
T 1a1h_A           35 FQCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRHTKIHL   86 (90)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH-HHC-CCCEECTTTCCEESSHHHHHHHHGGGG
T ss_pred             ccCCCCCcccCCHHHHHHHHHH-cCC-CCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            6666666633 34556666653 322 23345666666532  35666665443

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.03  E-value=0.02  Score=39.63  Aligned_cols=52  Identities=15%  Similarity=0.347  Sum_probs=39.4

Q ss_pred             ccccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhhhc
Q 028361           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (210)
Q Consensus        43 ~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~qh~   96 (210)
                      ..|.|++|+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+...|+
T Consensus        35 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   89 (96)
T 2dmd_A           35 KPYKCKTCDYAAADSSSLNKHLRI-HSD-ERPFKCQICPYASRNSSQLTVHLRSHTG   89 (96)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH-SCC-CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCEeCCCCCCccCCHHHHHHHHHH-hCC-CCCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            359999999955 56789999976 543 3567899999874  3488999886654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=94.96  E-value=0.015  Score=38.85  Aligned_cols=51  Identities=20%  Similarity=0.528  Sum_probs=38.8

Q ss_pred             ccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhhhcc
Q 028361           45 FPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHAS   97 (210)
Q Consensus        45 f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~qh~~   97 (210)
                      |.|+.|+..| ....|..|+.. |. ..+.-.|++|....  ..++..|+...++.
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~-h~-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLI-HS-DTRPYPCQYCGKRFHQKSDMKKHTFIHTGE   55 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHH-HH-TCCCEECSSSCCEESSHHHHHHHHHHHHTC
T ss_pred             ccCCCCcccccCchhHHHHHHH-cC-CCCCeeCCcCChhhCCHHHHHHHHHHhcCC
Confidence            7899999955 56789999976 43 24567899999875  34899999866553

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.89  E-value=0.018  Score=41.50  Aligned_cols=53  Identities=21%  Similarity=0.402  Sum_probs=40.5

Q ss_pred             ccccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhcc
Q 028361           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHAS   97 (210)
Q Consensus        43 ~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~~   97 (210)
                      ..|.|++|+..| ....|..|+.. |.. .+.-.|++|.....  .++..|+...|+.
T Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           65 QVFTCSVCQETFRRRMELRLHMVS-HTG-EMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH-HSS-SCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH-cCC-CCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            469999999955 56779999866 443 35678999998744  4899999877754

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.82  E-value=0.016  Score=41.43  Aligned_cols=54  Identities=20%  Similarity=0.356  Sum_probs=36.4

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhhhcchh
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHASSL   99 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~qh~~~~   99 (210)
                      .|.|++|+..| ....|..|+.. |.. .+.-.|++|....  ..++..|++..|....
T Consensus        37 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~   93 (110)
T 2csh_A           37 PYGCGVCGKKFKMKHHLVGHMKI-HTG-IKPYECNICAKRFMWRDSFHRHVTSCTKSYE   93 (110)
T ss_dssp             SEECTTTSCEESSSHHHHHHHTT-TCC-CCCEECSSSCCEESCHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHHH-cCC-CCCeeCCCCcchhcCHHHHHHHHHHcccccc
Confidence            48888888744 44677888765 433 2456788888764  3478888887665543

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=94.73  E-value=0.021  Score=41.15  Aligned_cols=52  Identities=21%  Similarity=0.377  Sum_probs=40.6

Q ss_pred             ccccCCCCCcchh-HHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhhhc
Q 028361           43 ACFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (210)
Q Consensus        43 ~~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~qh~   96 (210)
                      ..|.||.|+..|. ...|..|+.. |.- .++-.|++|...-  ..++.+|++..|.
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~~-H~~-~k~~~C~~C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLRL-LHA-AQVFPCKYCPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHHT-TSC-SSSEECTTSSCEESSHHHHHHHHHTTCT
T ss_pred             CCEECCCCCCCcCcHHHHhhhhhh-ccC-CCccCCCCCCCEeCCHHHHHHhCcccCc
Confidence            4699999999664 6789999876 543 4677999999974  4589999986664

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=94.43  E-value=0.036  Score=39.12  Aligned_cols=52  Identities=17%  Similarity=0.299  Sum_probs=39.3

Q ss_pred             ccccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhc
Q 028361           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        43 ~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~   96 (210)
                      ..|.|++|+..| ....|..|+.. |.. .+.-.|++|.....  .++..|+.+.++
T Consensus        44 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~   98 (106)
T 2ee8_A           44 RPYTCDICHKAFRRQDHLRDHRYI-HSK-EKPFKCQECGKGFCQSRTLAVHKTLHMQ   98 (106)
T ss_dssp             CCCBCSSSCCBCSCHHHHHHHGGG-SCC-CCTTSCSSSCCCCSSHHHHHHHHHHTTS
T ss_pred             CCcCCCCccchhCCHHHHHHHHHH-hCC-CCCeECCCcCCcccCHHHHHHHHHHhCC
Confidence            459999999965 66789999865 543 35578999998753  489999986554

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=94.19  E-value=0.027  Score=38.86  Aligned_cols=54  Identities=20%  Similarity=0.507  Sum_probs=37.5

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhhhcchh
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHASSL   99 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~qh~~~~   99 (210)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+...|+..+
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~   59 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRHRDIQHILPI   59 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH-HHC-CCCEECTTTCCEESSHHHHHHHHHHHTHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHH-cCC-CCCccCCCCCCccCCHHHHHHHHHHhCCCcc
Confidence            47888888855 45678888765 533 3456788888764  3478888888876433

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=94.04  E-value=0.0078  Score=41.69  Aligned_cols=52  Identities=12%  Similarity=0.076  Sum_probs=42.0

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhcch
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHASS   98 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~~~   98 (210)
                      .|.|++|+..| ....|..|+...|.   ...+|+.|.....  .++..||...|+..
T Consensus        31 ~~~C~~C~k~f~~~~~L~~H~~~h~~---~~~~c~~C~~~f~~~~~L~~H~~~~h~~~   85 (88)
T 1llm_C           31 PFACDICGRKFARSDERKRHRDIQHI---LPILEDKVEELLSKNYHLENEVARLKKLV   85 (88)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhCC---CcchHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            49999999965 56889999988773   6789999998654  37999999777654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=93.82  E-value=0.041  Score=39.20  Aligned_cols=45  Identities=24%  Similarity=0.427  Sum_probs=34.6

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHh
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFM   92 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~   92 (210)
                      .|.|++|+..| ....|..|+.. |   .+.-.|++|.....  .++..|++
T Consensus        16 ~~~C~~C~~~f~~~~~l~~H~~~-H---~~~~~C~~C~~~f~~~~~l~~H~~   63 (107)
T 1wjp_A           16 VYQCRLCNAKLSSLLEQGSHERL-C---RNAAVCPYCSLRFFSPELKQEHES   63 (107)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH-H---HHSBCCTTTCCCBSSHHHHHHHHH
T ss_pred             CeECCCCCCccCCHHHHHHHHHH-C---CCCccCCCCCCccCCHHHHHHHHH
Confidence            59999999855 56778888876 5   36678999988753  47888884

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=93.80  E-value=0.035  Score=37.36  Aligned_cols=49  Identities=24%  Similarity=0.493  Sum_probs=38.4

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhh
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQ   94 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~q   94 (210)
                      -|.|+.|+..| ....|..|+.. |.- .++-.|++|...-  ..++..|+.+.
T Consensus         4 py~C~~C~k~F~~~~~L~~H~~~-Ht~-ekp~~C~~C~k~F~~~~~L~~H~~~H   55 (60)
T 4gzn_C            4 PFFCNFCGKTYRDASGLSRHRRA-HLG-YRPRSCPECGKCFRDQSEVNRHLKVH   55 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHH-HHT-CCCEECTTTCCEESSHHHHHHHGGGG
T ss_pred             CccCCCCCCEeCCHHHHHHHHHH-hCC-CcCeECCCCCCCcCCHHHHHHHhCcc
Confidence            38999999966 46779999865 754 4677999999974  45899998763

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.18  E-value=0.082  Score=31.85  Aligned_cols=34  Identities=18%  Similarity=0.128  Sum_probs=25.9

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..| ....|..|+.. |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~C   46 (46)
T 2ytn_A           12 PYKCNECGKVFTQNSHLARHRGI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHGGG-TSCC-CCCSCCCC
T ss_pred             CeECCCCCCeeCCHHHHHHHhhh-cCCC-CCCCCCCC
Confidence            49999999855 45678889754 6544 67789998

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=93.15  E-value=0.057  Score=38.45  Aligned_cols=50  Identities=22%  Similarity=0.452  Sum_probs=38.1

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~   96 (210)
                      .|.|++|+..| ....|..|+ . |.- .+.-.|++|.....  .++..|+...|.
T Consensus        42 ~~~C~~C~~~f~~~~~l~~H~-~-H~~-~~~~~C~~C~~~f~~~~~L~~H~~~~H~   94 (107)
T 1wjp_A           42 AAVCPYCSLRFFSPELKQEHE-S-KCE-YKKLTCLECMRTFKSSFSIWRHQVEVHN   94 (107)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHH-H-HCS-TGGGEEGGGTEECSSHHHHHHHHHHTSC
T ss_pred             CccCCCCCCccCCHHHHHHHH-H-cCC-CCCccCccccchhCCHHHHHHHHHHHcC
Confidence            59999999855 467788998 3 664 45679999998754  489999975554

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.92  E-value=0.047  Score=39.21  Aligned_cols=52  Identities=13%  Similarity=0.105  Sum_probs=32.5

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhc-cCCCcccccCcccccch----hhhHHhhHhhhh
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEE-HCFEMKNAVCPLCAANL----GKDAAEHFMVQH   95 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~e-H~~e~~~~vCPvC~~~v----~~d~i~Hi~~qh   95 (210)
                      .|.|+.|+..| ....|..|+... |..+.....|++|....    ..++..|+...+
T Consensus        19 ~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~   76 (115)
T 2dmi_A           19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED   76 (115)
T ss_dssp             SEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCC
T ss_pred             CEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccC
Confidence            48899998854 466788888641 32223334588887643    346777776533

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=92.81  E-value=0.089  Score=35.00  Aligned_cols=52  Identities=25%  Similarity=0.537  Sum_probs=39.4

Q ss_pred             cccCCC--CCcch-hHHHhHhhhhhccCCCcccccCcc--cccch--hhhHHhhHhhhhc
Q 028361           44 CFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPL--CAANL--GKDAAEHFMVQHA   96 (210)
Q Consensus        44 ~f~CP~--C~e~~-d~~~L~~H~~~eH~~e~~~~vCPv--C~~~v--~~d~i~Hi~~qh~   96 (210)
                      .|+|++  |+..| ....|..|+...|.. .+.-.|++  |....  ..++..|+...++
T Consensus         7 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~-~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~   65 (79)
T 2dlk_A            7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIH-QKSFSCPEPACGKSFNFKKHLKEHMKLHSD   65 (79)
T ss_dssp             SEECSSTTTCCEESSHHHHHHHHHHGGGS-CCCEECSCTTTCCEESSHHHHHHHHHHHHT
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHHhCC-CCCeECCCCCCcCccCCHHHHHHHHHHhCC
Confidence            477887  99966 567899998766765 46678998  99874  3489999986554

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.74  E-value=0.093  Score=31.54  Aligned_cols=35  Identities=17%  Similarity=0.081  Sum_probs=26.6

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..|. ...|..|+...|..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~~H~~~-k~~~C~~C   47 (47)
T 2epx_A           12 PYECIECGKAFIQNTSLIRHWRYYHTGE-KPSGPSSG   47 (47)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHHTTTTTTS-CSSSCCCC
T ss_pred             CEECCccCchhCChHHHHHHhHhhcCCC-CCCCCCCC
Confidence            599999999554 577888987457543 56789988

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=92.68  E-value=0.051  Score=40.76  Aligned_cols=51  Identities=25%  Similarity=0.458  Sum_probs=35.6

Q ss_pred             cccCCC--CCcch-hHHHhHhhhhhccCCCcccccCcc--cccchh--hhHHhhHhhhhc
Q 028361           44 CFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPL--CAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        44 ~f~CP~--C~e~~-d~~~L~~H~~~eH~~e~~~~vCPv--C~~~v~--~d~i~Hi~~qh~   96 (210)
                      .|.|++  |+..| ....|..|+.. |.. .+.-.|++  |.....  .++..|+...|.
T Consensus        67 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  124 (155)
T 2gli_A           67 PHKCTFEGCRKSYSRLENLKTHLRS-HTG-EKPYMCEHEGCSKAFSNASDRAKHQNRTHS  124 (155)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHH-TTT-CCCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CccCCCCCCCCcccCHHHHHHHHHH-cCC-CCCeeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            488987  98844 56678888865 443 35568988  887643  478888855554

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=92.65  E-value=0.11  Score=36.00  Aligned_cols=56  Identities=16%  Similarity=0.360  Sum_probs=37.9

Q ss_pred             cccccccCCC--CCcch-hHHHhHhhhhhccCCCcccccCc--ccccch--hhhHHhhHhhhhcc
Q 028361           40 DVKACFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCP--LCAANL--GKDAAEHFMVQHAS   97 (210)
Q Consensus        40 d~~~~f~CP~--C~e~~-d~~~L~~H~~~eH~~e~~~~vCP--vC~~~v--~~d~i~Hi~~qh~~   97 (210)
                      +....|.|++  |+..| ....|..|+.. |.. .+.-.|+  +|....  ..++..|+...++.
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~   73 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRT-HTG-EKPYKCTWEGCDWRFARSDELTRHYRKHTGA   73 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHH-HSC-CCCEECCSSSCCCEESSHHHHHHHHHHHTSC
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHH-hCC-CCCeeCCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            4456788887  98855 56778888875 432 3456786  588764  34788888765543

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=92.58  E-value=0.058  Score=41.33  Aligned_cols=49  Identities=16%  Similarity=0.343  Sum_probs=31.1

Q ss_pred             ccccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhh
Q 028361           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMV   93 (210)
Q Consensus        43 ~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~   93 (210)
                      -.|.|+.|+..| ....|..|+.. |.. .++-.|++|...-  ..++..|+.+
T Consensus        21 k~y~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C~k~F~~~~~L~~H~~~   72 (133)
T 2lt7_A           21 VYYICIVCKRSYVCLTSLRRHFNI-HSW-EKKYPCRYCEKVFPLAEYRTKHEIH   72 (133)
T ss_dssp             EEEEETTTCCEESCHHHHHHHHHH-HHC-CSCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCeECCCCCCCcCCHHHHHHHHHH-cCC-CCCeeCCccCeecccccchhhhccc
Confidence            457888887744 45667777653 543 2455788887753  3467777664

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=92.49  E-value=0.12  Score=31.13  Aligned_cols=34  Identities=18%  Similarity=0.149  Sum_probs=25.9

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em0_A           12 TWKCRECDMCFSQASSLRLHQNV-HVG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHGGG-GSS-SSCSCSSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCC-CCCcCCCCC
Confidence            49999999955 45778889765 654 356789998

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=92.49  E-value=0.094  Score=37.87  Aligned_cols=50  Identities=22%  Similarity=0.489  Sum_probs=31.8

Q ss_pred             cccCC--CCCcch-hHHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhhhc
Q 028361           44 CFPCP--FCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHA   96 (210)
Q Consensus        44 ~f~CP--~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~qh~   96 (210)
                      .|.||  .|+..| ....|..|+.. |  ..+.-.|++|....  ..++..|+...++
T Consensus         5 ~~~C~~~~C~~~f~~~~~l~~H~~~-h--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   59 (124)
T 1ubd_C            5 TIACPHKGCTKMFRDNSAMRKHLHT-H--GPRVHVCAECGKAFVESSKLKRHQLVHTG   59 (124)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHGG-G--SCCCEECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             cccCCCCCCcCccCCHHHHHHHHHH-c--CCCCeECCCCCchhCCHHHHHHHHHHcCC
Confidence            57777  687754 45677777753 5  45566788877663  3367777765443

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=92.33  E-value=0.097  Score=33.05  Aligned_cols=39  Identities=13%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             ccccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccc
Q 028361           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAAN   82 (210)
Q Consensus        43 ~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~   82 (210)
                      ..|.|+.|+..| ....|..|+...|.- .+.-.|++|...
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~~H~~-~k~~~C~~C~k~   50 (54)
T 2eps_A           11 KPYICQSCGKGFSRPDHLNGHIKQVHTS-ERPHKCQVWVSG   50 (54)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCC-CCCCCSSSSCCS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC-CCCccCCCCCCC
Confidence            359999999965 567789998756765 356789999865

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.18  E-value=0.098  Score=31.47  Aligned_cols=35  Identities=17%  Similarity=0.107  Sum_probs=26.4

Q ss_pred             ccccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        43 ~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      ..|.|++|+..| ....|..|+.. |..+ +.-.|++|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~c   46 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQLI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHTT-TCCC-CCSCCSCC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            359999999955 45678889755 6654 66789998

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=92.15  E-value=0.093  Score=35.59  Aligned_cols=52  Identities=19%  Similarity=0.474  Sum_probs=38.4

Q ss_pred             cccCCC--CCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhcc
Q 028361           44 CFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHAS   97 (210)
Q Consensus        44 ~f~CP~--C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~~   97 (210)
                      .|.||+  |+..| ....|..|+.. |.. .+.-.|++|.....  .++..|+...++.
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   60 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRI-HTG-QKPFQCRICMRNFSRSDHLTTHIRTHTGE   60 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHH-HHC-CCCEECTTTCCEESCHHHHHHHHHHHHCC
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHH-hCC-CCCccCCCCCcccCCHHHHHHHHHHcCCC
Confidence            589995  99965 46778899875 432 35578999998743  4889999866553

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.02  E-value=0.13  Score=30.84  Aligned_cols=34  Identities=12%  Similarity=-0.024  Sum_probs=25.8

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2eop_A           12 PHECRECGKSFSFNSQLIVHQRI-HTG-ENPSGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTT-TTT-SCCSCCCCC
T ss_pred             CeeCCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            59999999855 45778889765 654 356789988

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.01  E-value=0.11  Score=31.14  Aligned_cols=34  Identities=15%  Similarity=0.134  Sum_probs=25.8

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..|. ...|..|+.. |..+ +.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~~C   46 (46)
T 2eov_A           12 PYKCSDCGKSFTWKSRLRIHQKC-HTGE-RHSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHHH-HSCC-SSCCSCCC
T ss_pred             CccCCccChhhCCHHHHHHHHHh-cCCC-CCCCCCCC
Confidence            499999998554 5778899754 6543 56789988

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=91.96  E-value=0.1  Score=31.36  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=25.9

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..| ....|..|+.. |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~c   46 (46)
T 2ema_A           12 RYKCNECGKVFSRNSQLSQHQKI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTG-GGCC-CCCSSSCC
T ss_pred             CcCCCCCcchhCCHHHHHHHHHh-cCCC-CCCCCCCC
Confidence            49999999965 45678889765 6543 66789998

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=91.94  E-value=0.083  Score=39.17  Aligned_cols=48  Identities=23%  Similarity=0.415  Sum_probs=37.1

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCC--CcccccCcccccch--hhhHHhhH
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCF--EMKNAVCPLCAANL--GKDAAEHF   91 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~--e~~~~vCPvC~~~v--~~d~i~Hi   91 (210)
                      .|.|++|+..| ....|..|+...|..  ..++-.|++|....  ..++..|+
T Consensus        18 py~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~   70 (102)
T 2ghf_A           18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHN   70 (102)
T ss_dssp             SEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHH
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHH
Confidence            59999999966 467799998766853  35678999999874  34888994

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.75  E-value=0.11  Score=31.13  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=25.8

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..| ....|..|+.. |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-~~~~C~~C   46 (46)
T 2eoe_A           12 PYKCNECGKVFTQNSHLANHQRI-HTGV-KPSGPSSG   46 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHGG-GSCC-CSCSSCCC
T ss_pred             CeECCCcChhhCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            49999999855 45678889754 6554 66789998

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.75  E-value=0.1  Score=31.41  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=25.8

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..| ....|..|+.. |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~~c   46 (46)
T 2ytk_A           12 PYKCNECGKVFTQNSHLTNHWRI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HSSS-SCSSCCCC
T ss_pred             CEeCCcCCCccCCHHHHHHHHHH-HCCC-CCCCCCCC
Confidence            59999999955 45678888864 6543 56789998

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.73  E-value=0.14  Score=30.76  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=25.8

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..| ....|..|+.. |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~C   46 (46)
T 2eoq_A           12 PFKCDICGKSFCGRSRLNRHSMV-HTAE-KPSGPSSG   46 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHH-TTCC-CSSSCCCC
T ss_pred             CcCCCcCCchhCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            59999999865 55778889764 6543 56789988

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.69  E-value=0.12  Score=31.02  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=26.3

Q ss_pred             ccccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        43 ~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      ..|.|++|+..| ....|..|+.. |..+ ++-.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~c   46 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHT-TSSC-CSCCSCCC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHH-hCCC-CCCCCCCC
Confidence            359999999855 55778889864 6543 66789988

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.53  E-value=0.13  Score=30.96  Aligned_cols=34  Identities=15%  Similarity=0.076  Sum_probs=25.7

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~c   46 (46)
T 2ytj_A           12 PYICAECGKAFTIRSNLIKHQKI-HTK-QKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-TSC-CCCSSCSCC
T ss_pred             CeECCCCChhhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            49999999955 45678889865 654 366789988

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.51  E-value=0.13  Score=30.95  Aligned_cols=34  Identities=18%  Similarity=0.153  Sum_probs=25.9

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..| ....|..|+.. |..+ +.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~C   46 (46)
T 2ene_A           12 PYKCNECGKVFRHNSYLSRHQRI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TCCC-CCCSCCCC
T ss_pred             CeECCCCCchhCChHHHHHHHhh-cCCC-CCCCCCCC
Confidence            49999999955 45678889765 6543 66789988

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=91.43  E-value=0.099  Score=34.45  Aligned_cols=49  Identities=20%  Similarity=0.487  Sum_probs=35.7

Q ss_pred             ccccCCC--CCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhh
Q 028361           43 ACFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMV   93 (210)
Q Consensus        43 ~~f~CP~--C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~   93 (210)
                      ..|.||+  |+..| ....|..|+.. |.. .+.-.|++|.....  .++..|+..
T Consensus        18 ~~~~C~~~~C~k~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           18 RPYACPVESCDRRFSRSDELTRHIRI-HTG-QKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCEECSSTTBCCEESSHHHHHHHHHH-HHC-CCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             CccCCcCCCCCCccCCHHHHHHHHHh-hCC-CCCeECCCCCchhCCHHHHHHHHHh
Confidence            3599986  99955 56778899765 543 35578999998754  478888763

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=91.41  E-value=0.088  Score=41.08  Aligned_cols=52  Identities=17%  Similarity=0.376  Sum_probs=37.4

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhhhcc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHAS   97 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~qh~~   97 (210)
                      .|.|++|+..| ....|..|+...+.  .+.-.|++|....  ..++..|+...++.
T Consensus       105 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  159 (190)
T 2i13_A          105 PYACPECGKSFSQLAHLRAHQRTHTG--EKPYKCPECGKSFSREDNLHTHQRTHTGE  159 (190)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHHC--CCCEECTTTCCEESCHHHHHHHHHHHHCC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhCC--CCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            58999999855 45678888876332  3456899998874  34888998876653

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=91.31  E-value=0.13  Score=31.50  Aligned_cols=37  Identities=14%  Similarity=0.108  Sum_probs=28.3

Q ss_pred             ccccCCCCCcch-hHHHhHhhhhhccCCCcccccCccccc
Q 028361           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAA   81 (210)
Q Consensus        43 ~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~   81 (210)
                      ..|.|++|+..| ....|..|+.. |.- .+.-.|++|.+
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C~k   48 (48)
T 2epr_A           11 KQVACEICGKIFRDVYHLNRHKLS-HSG-EKPYSSGPSSG   48 (48)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGG-SCS-CCCCCSCCCCC
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHh-cCC-CCCccCCCCCC
Confidence            469999999965 56788999865 654 35678999964

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=91.20  E-value=0.19  Score=33.96  Aligned_cols=52  Identities=19%  Similarity=0.400  Sum_probs=34.8

Q ss_pred             ccccCCC--CCcch-hHHHhHhhhhhccCCCcccccCc--ccccch--hhhHHhhHhhhhc
Q 028361           43 ACFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCP--LCAANL--GKDAAEHFMVQHA   96 (210)
Q Consensus        43 ~~f~CP~--C~e~~-d~~~L~~H~~~eH~~e~~~~vCP--vC~~~v--~~d~i~Hi~~qh~   96 (210)
                      ..|.|++  |+..| ....|..|+.. |.. .+.-.|+  +|....  ..++..|+...++
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   62 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRT-HTG-EKPYHCDWDGCGWKFARSDELTRHYRKHTG   62 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTT-SCS-SCCEECCSTTTCCEESSHHHHHHHHHHHHC
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHh-cCC-CCCcCCCCCCCCCccCCHHHHHHHHHHcCC
Confidence            4688888  88855 56678888865 432 3456787  587764  3477888875544

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.12  E-value=0.18  Score=30.19  Aligned_cols=34  Identities=18%  Similarity=0.033  Sum_probs=25.7

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..|. ...|..|+.. |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2epz_A           12 PFDCIDCGKAFSDHIGLNQHRRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHTT-TTT-CCCCSSCCC
T ss_pred             CeECCCCCceeCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            499999999554 5778889764 654 366789988

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=91.10  E-value=0.15  Score=30.67  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=25.4

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..| ....|..|+.. |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emk_A           12 PYECKECGKAFSQTTHLIQHQRV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHHH-HSS-CCCSSCCCC
T ss_pred             ceECCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            49999999855 45678888865 654 366789988

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=91.10  E-value=0.23  Score=37.03  Aligned_cols=53  Identities=19%  Similarity=0.189  Sum_probs=30.4

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCC-CcccccCcccc-----cc--hhhhHHhhHhhhhc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCF-EMKNAVCPLCA-----AN--LGKDAAEHFMVQHA   96 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~-e~~~~vCPvC~-----~~--v~~d~i~Hi~~qh~   96 (210)
                      .|+|+.|+..| ....|..|+...|.. +.+.-+|++|.     ..  -...+..|+...++
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~   64 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG   64 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHC
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCC
Confidence            46777787744 466777777764432 23445666533     22  22366777765444

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.09  E-value=0.13  Score=30.95  Aligned_cols=34  Identities=18%  Similarity=0.134  Sum_probs=25.6

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..| ....|..|+.. |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emy_A           12 PYECHECGKAFSRKYQLISHQRT-HAG-EKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HTT-SCCSCSSCC
T ss_pred             CcCCCCCCcccCcHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            49999999855 45778889765 654 356789988

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=91.04  E-value=0.18  Score=30.30  Aligned_cols=34  Identities=15%  Similarity=0.164  Sum_probs=25.8

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ytq_A           12 PYGCSECGKAFSSKSYLIIHMRT-HSG-EKPSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHTT-TCC-SCSSCCCCC
T ss_pred             CcCCCccChhhCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            49999999855 45778899765 654 366789988

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=90.92  E-value=0.17  Score=30.26  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=25.6

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..|- ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2el4_A           12 PYGCSQCAKTFSLKSQLIVHQRS-HTG-VKPSGPSSG   46 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHGGG-SSS-CCCSCCTTC
T ss_pred             ceECCCCCchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            499999999554 5678889754 654 356789998

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.91  E-value=0.19  Score=30.05  Aligned_cols=34  Identities=18%  Similarity=0.126  Sum_probs=25.7

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2eq4_A           12 LYNCKECGKSFSRAPCLLKHERL-HSG-EKPSGPSSG   46 (46)
T ss_dssp             CCCBTTTTBCCSCHHHHHHHHHH-CCS-SSCCCCCCC
T ss_pred             CeECCCCCCccCchHHHHHHHHh-cCC-CCCCCCCCC
Confidence            49999999955 45678899755 654 366789988

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.86  E-value=0.18  Score=30.34  Aligned_cols=34  Identities=18%  Similarity=0.142  Sum_probs=25.8

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..|. ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~c   46 (46)
T 2emf_A           12 HFECTECGKAFTRKSTLSMHQKI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESCHHHHHHHGGG-TSC-SSCSCCCCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            499999999654 5678889865 643 466789998

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.80  E-value=0.2  Score=29.93  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=25.5

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ytr_A           12 PYKCNECGKAFSQTSKLARHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             TTCCTTTCCCCSSHHHHHHHHTT-TTT-CSCCCSCCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            49999999955 45678889755 654 356789988

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.80  E-value=0.11  Score=31.15  Aligned_cols=34  Identities=15%  Similarity=0.110  Sum_probs=25.4

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..|. ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~c   46 (46)
T 2emh_A           12 PYICTVCGKAFTDRSNLIKHQKI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHH-HHC-SSCSSSCCC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            499999998554 5678888754 654 366789988

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=90.76  E-value=0.14  Score=36.26  Aligned_cols=51  Identities=16%  Similarity=0.381  Sum_probs=38.4

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhcc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHAS   97 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~~   97 (210)
                      .|.| .|+..| ....|..|+.. |.. .+.-.|++|.....  .++..|+...++.
T Consensus        10 ~~~C-~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   63 (110)
T 2csh_A           10 LYPC-QCGKSFTHKSQRDRHMSM-HLG-LRPYGCGVCGKKFKMKHHLVGHMKIHTGI   63 (110)
T ss_dssp             CEEC-TTSCEESSHHHHHHHHHH-HSC-CCSEECTTTSCEESSSHHHHHHHTTTCCC
T ss_pred             CEec-cCCCccCCHHHHHHHHHH-cCC-CcCccCCCCCcccCCHHHHHHHHHHcCCC
Confidence            5999 999955 56789999976 433 35679999998754  4899999876553

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=90.74  E-value=0.14  Score=39.93  Aligned_cols=50  Identities=18%  Similarity=0.387  Sum_probs=23.4

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhhh
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQH   95 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~qh   95 (210)
                      .|.|++|+..| ....|..|+...|.  .+.-.|++|....  ..++..|+...+
T Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~  101 (190)
T 2i13_A           49 PYKCPECGKSFSDKKDLTRHQRTHTG--EKPYKCPECGKSFSQRANLRAHQRTHT  101 (190)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHHC--CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CccCCCcCchhCCHHHHHHHHHhcCC--CCCccCcccCCccCCHHHHHHHHHhcC
Confidence            35566665533 33455555544221  2334555555542  225555555433

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=90.74  E-value=0.18  Score=30.12  Aligned_cols=34  Identities=18%  Similarity=0.093  Sum_probs=25.9

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em9_A           12 PYNCKECGKSFRWASCLLKHQRV-HSG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGGG-GTS-CCCCSTTCC
T ss_pred             CeECCccccccCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            59999999965 45788889755 654 356789988

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.66  E-value=0.18  Score=30.29  Aligned_cols=34  Identities=24%  Similarity=0.187  Sum_probs=26.0

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..| ....|..|+.. |..+ +.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~~C   46 (46)
T 2enc_A           12 PFKCEECGKGFYTNSQCYSHQRS-HSGE-KPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-SCCS-SCCSSCCC
T ss_pred             CcCCCCCCCcCCChHHHHHHHHH-hCCC-CCCCCCCC
Confidence            49999999955 55788899755 6543 66789988

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.54  E-value=0.18  Score=30.32  Aligned_cols=34  Identities=15%  Similarity=0.033  Sum_probs=26.0

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em5_A           12 SHQCHECGRGFTLKSHLNQHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TSC-SCCSSCCCC
T ss_pred             CeECCcCCCccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            59999999955 56788899755 654 356789988

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.46  E-value=0.15  Score=30.48  Aligned_cols=34  Identities=15%  Similarity=0.051  Sum_probs=25.8

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..|- ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2epw_A           12 PCKCTECGKAFCWKSQLIMHQRT-HVD-DKHSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHHHH-CCS-CCCSCCCCC
T ss_pred             CeeCCCCCCccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            499999998554 5778889865 654 356789988

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.40  E-value=0.2  Score=29.95  Aligned_cols=34  Identities=15%  Similarity=0.153  Sum_probs=25.7

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..| ....|..|+.. |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2eme_A           12 PYVCDYCGKAFGLSAELVRHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGG-GCC-CSCCSSCCC
T ss_pred             CeECCCCChhhCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            49999999955 45778899854 654 356789988

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.38  E-value=0.16  Score=30.46  Aligned_cols=34  Identities=18%  Similarity=0.093  Sum_probs=25.5

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..|. ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ytg_A           12 PFKCGECGKSYNQRVHLTQHQRV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSSHHHHTTGGG-GSS-CCSSCSCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999554 5678889754 654 356789988

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=90.30  E-value=0.15  Score=33.91  Aligned_cols=50  Identities=18%  Similarity=0.310  Sum_probs=24.7

Q ss_pred             ccC--CCCCcch-hHHHhHhhhhhccCCCcccccCcc--cccch--hhhHHhhHhhhhc
Q 028361           45 FPC--PFCYLEI-EAHMICSHLQEEHCFEMKNAVCPL--CAANL--GKDAAEHFMVQHA   96 (210)
Q Consensus        45 f~C--P~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPv--C~~~v--~~d~i~Hi~~qh~   96 (210)
                      |.|  +.|+..| ....|..|+.. |.. .+.-.|++  |....  ..++..|+...++
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQFS-HTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH-HHT-TCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             ccCCCCCCCcccCCHHHHHHHHHH-hCC-CCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            456  5566544 34455556533 322 23445655  65543  2355566655444

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=90.29  E-value=0.17  Score=30.49  Aligned_cols=34  Identities=18%  Similarity=0.079  Sum_probs=25.7

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..|- ...|..|+.. |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ely_A           12 PFKCVECGKGFSRRSALNVHHKL-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SBCCSSSCCCBSSTTHHHHHHHH-HSC-CSSCSCCCC
T ss_pred             CcccCccCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            499999998554 5778889765 654 466789988

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=90.28  E-value=0.24  Score=35.66  Aligned_cols=53  Identities=17%  Similarity=0.293  Sum_probs=39.0

Q ss_pred             ccccCCCCCcch-hHHHhHhhhhhccCCCcccccCcc--cccch--hhhHHhhHhhhhcc
Q 028361           43 ACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPL--CAANL--GKDAAEHFMVQHAS   97 (210)
Q Consensus        43 ~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPv--C~~~v--~~d~i~Hi~~qh~~   97 (210)
                      ..|.|+.|+..| ....|..|+.. |.. .+.-.|++  |....  ..++..|+...++.
T Consensus        33 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~   90 (124)
T 1ubd_C           33 RVHVCAECGKAFVESSKLKRHQLV-HTG-EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   90 (124)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGGG-TSC-CCCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH-cCC-CCCeeCCCCCCcCccCCHHHHHHHHHHhCCC
Confidence            359999999955 56789999875 443 35578987  98874  34889999876653

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.21  E-value=0.16  Score=30.66  Aligned_cols=34  Identities=12%  Similarity=0.103  Sum_probs=25.3

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..| ....|..|+.. |..+ +.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~~C   46 (46)
T 2ytm_A           12 PYKCMECGKAFGDNSSCTQHQRL-HTGQ-RPSGPSSG   46 (46)
T ss_dssp             SSSBTTTTBCCSSHHHHHHHHHH-HHSC-CCCCCCCC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            49999999855 45678888765 6543 56789988

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.15  E-value=0.12  Score=34.86  Aligned_cols=48  Identities=21%  Similarity=0.450  Sum_probs=29.2

Q ss_pred             ccccccccCCCCCcchhHH-H-hHhh-----hhhccCCC-cccccCcccccchhhh
Q 028361           39 DDVKACFPCPFCYLEIEAH-M-ICSH-----LQEEHCFE-MKNAVCPLCAANLGKD   86 (210)
Q Consensus        39 ~d~~~~f~CP~C~e~~d~~-~-L~~H-----~~~eH~~e-~~~~vCPvC~~~v~~d   86 (210)
                      ++....+.||.|.+.+... . -|-|     |-..+--. ..+..||+|...+..+
T Consensus        15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            4566789999998866542 1 2333     22222221 3456899999887654

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=90.13  E-value=0.18  Score=34.01  Aligned_cols=49  Identities=16%  Similarity=0.400  Sum_probs=35.8

Q ss_pred             ccccCCC--CCcch-hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhh
Q 028361           43 ACFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMV   93 (210)
Q Consensus        43 ~~f~CP~--C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~   93 (210)
                      ..|.||+  |+..| ....|..|+.. |..+ +.-.|++|.....  .++..|+..
T Consensus        34 ~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~~-~~~~C~~C~~~f~~~~~l~~H~~~   87 (89)
T 2wbs_A           34 KPYHCDWDGCGWKFARSDELTRHYRK-HTGH-RPFQCQKCDRAFSRSDHLALHMKR   87 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHH-HHCC-CCEECSSSSCEESSHHHHHHHGGG
T ss_pred             CCcCCCCCCCCCccCCHHHHHHHHHH-cCCC-CCccCCCCCcccCCHHHHHHHHHh
Confidence            3599986  99865 56778899864 5443 5678999998743  478888763

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=90.13  E-value=0.21  Score=38.90  Aligned_cols=49  Identities=20%  Similarity=0.339  Sum_probs=23.1

Q ss_pred             ccCC--CCCc-chhHHHhHhhhhhccCCCcccccC--cccccch--hhhHHhhHhh
Q 028361           45 FPCP--FCYL-EIEAHMICSHLQEEHCFEMKNAVC--PLCAANL--GKDAAEHFMV   93 (210)
Q Consensus        45 f~CP--~C~e-~~d~~~L~~H~~~eH~~e~~~~vC--PvC~~~v--~~d~i~Hi~~   93 (210)
                      |.|+  .|+. =.....|..|+...|....+.-+|  ++|....  ..++..|+..
T Consensus        73 ~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~  128 (190)
T 1tf6_A           73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS  128 (190)
T ss_dssp             EECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGG
T ss_pred             eeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHH
Confidence            5555  4555 223445555554445443444455  4455442  2245555544

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.13  E-value=0.21  Score=29.94  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=25.8

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ep0_A           12 PYKCDVCHKSFRYGSSLTVHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TSS-SCCCSCCCC
T ss_pred             CeeCcccCcccCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            49999999955 45778889754 654 366789988

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=90.11  E-value=0.13  Score=35.25  Aligned_cols=48  Identities=13%  Similarity=0.257  Sum_probs=28.8

Q ss_pred             cCccccccccCCCCCcchhHHH--hHhh-----hhhccCCCcccccCcccccchhh
Q 028361           37 IDDDVKACFPCPFCYLEIEAHM--ICSH-----LQEEHCFEMKNAVCPLCAANLGK   85 (210)
Q Consensus        37 ~d~d~~~~f~CP~C~e~~d~~~--L~~H-----~~~eH~~e~~~~vCPvC~~~v~~   85 (210)
                      |+++.+..|.||.|.+.|....  -|-|     +-..+- ......||+|...+..
T Consensus         1 g~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~-~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            1 GSPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWL-DAGHKTCPKSQETLLH   55 (78)
T ss_dssp             CCCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHH-TTTCCBCTTTCCBCSS
T ss_pred             CCcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHH-HHCcCCCCCCcCCCCh
Confidence            3556788999999988554322  1222     111111 2236789999998764

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.11  E-value=0.14  Score=30.77  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=25.9

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..|. ...|..|+.. |..+ +.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~C   46 (46)
T 2en6_A           12 PYGCNECGKTFSQKSILSAHQRT-HTGE-KPSGPSSG   46 (46)
T ss_dssp             CEEETTTTEEESSHHHHHHHHHH-HSSC-CCSSSCCC
T ss_pred             CeECCCCCcccCchHHHHHHHHH-cCCC-CCCCCCCC
Confidence            599999998554 5778889865 6543 66789988

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=90.06  E-value=0.21  Score=33.25  Aligned_cols=48  Identities=17%  Similarity=0.200  Sum_probs=36.6

Q ss_pred             ccccCCC--CCcch-hHHHhHhhhhhccCCCcccccCcc---cccch--hhhHHhhHhhhh
Q 028361           43 ACFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPL---CAANL--GKDAAEHFMVQH   95 (210)
Q Consensus        43 ~~f~CP~--C~e~~-d~~~L~~H~~~eH~~e~~~~vCPv---C~~~v--~~d~i~Hi~~qh   95 (210)
                      ..|.||+  |+..| ....|..|+...+.     -.|++   |...-  ..++..|+...|
T Consensus        30 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-----~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           30 LPYECPHEGCDKRFSLPSRLKRHEKVHAG-----YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHHHS-----EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CCeeCCCCCCcCccCCHHHHHHHHHHhCC-----CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            3599999  99955 67889999977544     57999   98864  458899987654

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.80  E-value=0.23  Score=29.64  Aligned_cols=34  Identities=18%  Similarity=0.086  Sum_probs=25.6

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..| ....|..|+.. |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~C   46 (46)
T 2en8_A           12 SHTCDECGKNFCYISALRIHQRV-HMGE-KCSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT-TCCS-CSSCCSCC
T ss_pred             CeECCCcCcccCCHHHHHHHHHH-hCCC-CCCCCCCC
Confidence            49999999965 45778889754 6543 56789988

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.76  E-value=0.19  Score=30.09  Aligned_cols=34  Identities=12%  Similarity=0.105  Sum_probs=25.4

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..|. ...|..|+.. |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ytd_A           12 PYKCSECGKAFHRHTHLNEHRRI-HTG-YRPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HTC-CCSSCSSCC
T ss_pred             CeECCCCCCeeCChHHHHHHHHH-cCC-CCCCCCCCC
Confidence            499999998554 5678889754 654 356789988

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.75  E-value=0.3  Score=29.27  Aligned_cols=34  Identities=15%  Similarity=0.030  Sum_probs=25.6

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..|. ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2elz_A           12 PYKCEDCGKGYNRRLNLDMHQRV-HMG-EKTSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHGGG-GGS-CCCCCSCCC
T ss_pred             CeeCcccCchhCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            499999999654 5778889764 643 456789988

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.63  E-value=0.18  Score=30.21  Aligned_cols=34  Identities=12%  Similarity=0.046  Sum_probs=25.8

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..|. ...|..|+.. |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ysp_A           12 PYKCEKCGKGYNSKFNLDMHQKV-HTG-ERPSGPSSG   46 (46)
T ss_dssp             SEEETTTTEEESCHHHHHHHHTT-SCS-CCSSCCSCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHh-hCC-CCCCCCCCC
Confidence            599999999554 5778899865 654 356789988

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.45  E-value=0.24  Score=29.63  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=25.0

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..| ....|..|+.. |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~~~   46 (46)
T 2ep3_A           12 PYRCAECGKAFTDRSNLFTHQKI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TTTS-CCCCTTCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            49999999855 45678889854 6543 56789886

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.45  E-value=0.21  Score=29.91  Aligned_cols=34  Identities=24%  Similarity=0.220  Sum_probs=25.4

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..| ....|..|+.. |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~~C   46 (46)
T 2en1_A           12 PFKCEECGKRFTQNSQLHSHQRV-HTGE-KPSGPSSG   46 (46)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGG-GSCC-CCSCCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            49999999855 45678889754 6543 66789988

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.40  E-value=0.26  Score=29.46  Aligned_cols=34  Identities=15%  Similarity=0.051  Sum_probs=25.6

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..|. ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2em7_A           12 PYKCEECGKGFICRRDLYTHHMV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHGGG-GTT-CCCSSTTCC
T ss_pred             CccCCCccchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999998554 5778889755 654 466789988

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=89.36  E-value=0.48  Score=33.68  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=28.2

Q ss_pred             ccccccccCCCCCc------------chhHHHhHhhhhhccCCCcccccCcccccchhh
Q 028361           39 DDVKACFPCPFCYL------------EIEAHMICSHLQEEHCFEMKNAVCPLCAANLGK   85 (210)
Q Consensus        39 ~d~~~~f~CP~C~e------------~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~~   85 (210)
                      .+.+.+|.||.|.+            -|+...+..|+..       +..||+|...+..
T Consensus         9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-------~~~cP~~~~~l~~   60 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-------SPTDPFNRQMLTE   60 (85)
T ss_dssp             TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-------CSBCTTTCCBCCG
T ss_pred             hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-------CCCCCCCcCCCCh
Confidence            44677899998654            4556666666653       4689999998764

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.25  E-value=0.18  Score=30.36  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=25.2

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..| ....|..|+.. |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2eoo_A           12 PYGCNECGKNFGRHSHLIEHLKR-HFR-EKSSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HHS-TTSSCCSCC
T ss_pred             CEEccccCcccCCHHHHHHHHHH-HcC-CCCCCCCCC
Confidence            49999999955 45678888765 643 356789988

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.24  E-value=0.23  Score=29.69  Aligned_cols=34  Identities=15%  Similarity=0.070  Sum_probs=25.4

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emm_A           12 PHKCNECGKSFIQSAHLIQHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HSC-CCTTSSSCC
T ss_pred             CeeCCCCChhhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            49999999955 45778889765 654 356789988

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=89.16  E-value=0.29  Score=29.34  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=25.5

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2el6_A           12 PYKCSQCEKSFSGKLRLLVHQRM-HTR-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGG-GCC-SSCCSCCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            49999999855 45778889755 654 356789988

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.13  E-value=0.15  Score=30.63  Aligned_cols=34  Identities=15%  Similarity=0.118  Sum_probs=25.0

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..| ....|..|+.. |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~~C   46 (46)
T 2yu8_A           12 PYKCNECGKVFTQNSHLARHRRV-HTGG-KPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHTHH-HHSC-CCSCSCCC
T ss_pred             CeECCcCCchhCCHHHHHHHHHh-cCCC-CCCCCCCC
Confidence            49999999855 45678888754 6443 56789988

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.89  E-value=0.32  Score=29.10  Aligned_cols=34  Identities=15%  Similarity=0.170  Sum_probs=25.3

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..|. ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2eml_A           12 PYECSVCGKAFSHRQSLSVHQRI-HSG-KKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGG-GSS-CCCSCSSCC
T ss_pred             CeeCCCcCCccCCHHHHHHHHHH-hcC-CCCCCCCCC
Confidence            499999998554 5678889765 654 356789988

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.85  E-value=0.21  Score=30.05  Aligned_cols=34  Identities=15%  Similarity=0.122  Sum_probs=25.2

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+.-| ....|..|+.. |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ytt_A           12 PYQCSECGKSFSGSYRLTQHWIT-HTR-EKPSGPSSG   46 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHTH-HHH-CCCCSCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            49999999855 55778888765 543 356789988

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=88.31  E-value=0.25  Score=29.50  Aligned_cols=35  Identities=20%  Similarity=0.392  Sum_probs=26.6

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCA   80 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~   80 (210)
                      .|.|+.|+..| ....|..|+.. |.- .+.-.||+|.
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~~-H~~-~~~~~C~~cg   45 (45)
T 2epq_A           10 PYSCPVCGLRFKRKDRMSYHVRS-HDG-SVGKSGPSSG   45 (45)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHH-HSC-CCCCCCCCCC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH-ccC-CCCCCCcCCC
Confidence            58999999965 56778889865 654 4567899983

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.17  E-value=0.12  Score=36.94  Aligned_cols=54  Identities=9%  Similarity=0.004  Sum_probs=39.5

Q ss_pred             ccccccCCCCCcch---hHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhhhhc
Q 028361           41 VKACFPCPFCYLEI---EAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        41 ~~~~f~CP~C~e~~---d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~qh~   96 (210)
                      .+..+.|++|+..|   ....|..|+.. |.- .++-.|++|.....  .++..|+...|.
T Consensus        47 ~~~~~~C~~C~~~f~f~~~~~l~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           47 DDNHETDNNNPKRWSKPRKRSLLEMEGK-EDA-QKVLKCMYCGHSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             CSCCCCCCCCCSCCSSCCCCCCCCCCCS-CCC-CSSCBCSSSCCBCSSHHHHHHHHHHTTT
T ss_pred             cCCCccCCCCCcccccccHHHHHHHhhc-cCC-CcceECCCCCCccCCHHHHHHHHHHhCC
Confidence            34566799999876   66788888755 543 35678999998744  488899876553

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.87  E-value=0.31  Score=29.20  Aligned_cols=34  Identities=24%  Similarity=0.203  Sum_probs=24.9

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|++|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~~   46 (46)
T 2em2_A           12 PFKCKECGKAFRQNIHLASHLRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HCC-CCSSCSSCC
T ss_pred             CEECCcCCchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            49999999855 45678888765 644 356788886

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.68  E-value=0.35  Score=28.62  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=25.3

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..|. ...|..|+.. |.. .+.-.|++|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   44 (44)
T 2emx_A           10 PFGCSCCEKAFSSKSYLLVHQQT-HAE-EKPSGPSSG   44 (44)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH-HTS-SCSCSCCCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            499999998554 5778889765 654 356789888

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.67  E-value=0.28  Score=29.33  Aligned_cols=34  Identities=15%  Similarity=0.028  Sum_probs=25.1

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..| ....|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emp_A           12 PYMCNECGKAFSVYSSLTTHQVI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHHHH-HHC-CSCCSCCCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            49999999855 45678888765 543 356789988

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1

Probab=87.46  E-value=0.18  Score=37.01  Aligned_cols=46  Identities=24%  Similarity=0.525  Sum_probs=29.5

Q ss_pred             CccCccccCcc-ccccccCCCCCc--chhHHHhHhhhhhccCCCcccccCcccccchh
Q 028361           30 SIVDETEIDDD-VKACFPCPFCYL--EIEAHMICSHLQEEHCFEMKNAVCPLCAANLG   84 (210)
Q Consensus        30 ~~~~~~~~d~d-~~~~f~CP~C~e--~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~   84 (210)
                      ..++|++-|++ ....|+|| ||.  .+....|...        .-.+.||-|.-.|.
T Consensus        15 v~LeDm~~de~~~~y~y~Cr-CGd~F~it~edL~~g--------e~iv~C~sCSL~I~   63 (83)
T 1wge_A           15 VEIEDFQYDEDSETYFYPCP-CGDNFAITKEDLENG--------EDVATCPSCSLIIK   63 (83)
T ss_dssp             EEGGGSCCBTTTTEEEECCS-SSSCEEEEHHHHHTT--------CCEEECTTTCCEEE
T ss_pred             EEHHHceEccCCCEEEEeCC-CCCEEEECHHHHhCC--------CEEEECCCCceEEE
Confidence            34566665444 34689999 987  4555555421        12578999998753

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=87.31  E-value=0.72  Score=33.99  Aligned_cols=40  Identities=20%  Similarity=0.287  Sum_probs=27.4

Q ss_pred             ccccccccCCCCCc------------chhHHHhHhhhhhccCCCcccccCcccccchhh
Q 028361           39 DDVKACFPCPFCYL------------EIEAHMICSHLQEEHCFEMKNAVCPLCAANLGK   85 (210)
Q Consensus        39 ~d~~~~f~CP~C~e------------~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~~   85 (210)
                      .+.+..|.||.|.+            .|+...+..|+..       +..||+|...+..
T Consensus        24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-------~~~cP~~~~~l~~   75 (100)
T 2kre_A           24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-------SPTDPFNRQTLTE   75 (100)
T ss_dssp             SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-------CSBCSSSCCBCCT
T ss_pred             ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-------CCCCCCCCCCCCh
Confidence            45678999998765            3445555555542       4689999998764

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=87.19  E-value=0.26  Score=32.11  Aligned_cols=36  Identities=17%  Similarity=0.387  Sum_probs=25.1

Q ss_pred             cccCCCCCcchhHHHhHhhhhhccCCCcccccCcccccch
Q 028361           44 CFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANL   83 (210)
Q Consensus        44 ~f~CP~C~e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v   83 (210)
                      .|.||.|+..|....-..   .-|.. .+.-.|++|....
T Consensus        14 ~~~C~~C~k~F~~~~~l~---~~H~~-~k~~~C~~C~k~f   49 (62)
T 1vd4_A           14 SFKCPVCSSTFTDLEANQ---LFDPM-TGTFRCTFCHTEV   49 (62)
T ss_dssp             EEECSSSCCEEEHHHHHH---HEETT-TTEEBCSSSCCBC
T ss_pred             CccCCCCCchhccHHHhH---hhcCC-CCCEECCCCCCcc
Confidence            599999999776544222   45654 3567999998754

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=87.01  E-value=0.72  Score=31.64  Aligned_cols=50  Identities=18%  Similarity=0.432  Sum_probs=37.1

Q ss_pred             ccccCCC--CCcch-hHHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhh
Q 028361           43 ACFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQ   94 (210)
Q Consensus        43 ~~f~CP~--C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~q   94 (210)
                      ..|.||+  |+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+...
T Consensus        44 ~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           44 KPYKCTWEGCDWRFARSDELTRHYRK-HTG-AKPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHHH-HTS-CCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             CCeeCCCCCCCCccCCHHHHHHHHHH-hCC-CCCeECCCCcCccCCHHHHHHHHHHh
Confidence            3599986  99855 56788999865 543 3567899999874  34899998754

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=86.75  E-value=0.3  Score=37.28  Aligned_cols=52  Identities=21%  Similarity=0.384  Sum_probs=40.8

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhhhcc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQHAS   97 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~qh~~   97 (210)
                      .|.|++|+..| ....|..|+.. |.-+ +.-+|++|...-  ..++..|+...|+.
T Consensus        50 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~C~k~F~~~~~L~~H~~~hh~~  104 (133)
T 2lt7_A           50 KYPCRYCEKVFPLAEYRTKHEIH-HTGE-RRYQCLACGKSFINYQFMSSHIKSVHSQ  104 (133)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH-HHTC-CCEEESSSCCEESSHHHHHHHHHHHTCC
T ss_pred             CeeCCccCeecccccchhhhccc-cCCC-ccccCCCCCCCcCCHHHHHHHhHHhcCC
Confidence            59999999965 46788899754 6543 567999999874  44899999988874

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=86.75  E-value=0.42  Score=33.83  Aligned_cols=48  Identities=17%  Similarity=0.367  Sum_probs=20.9

Q ss_pred             ccCC--CCCcch-hHHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHhhh
Q 028361           45 FPCP--FCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFMVQ   94 (210)
Q Consensus        45 f~CP--~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~~q   94 (210)
                      |.|+  .|+..| ....|..|+.. |.. .+.-.|++|....  ..++..|+...
T Consensus        37 ~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h   89 (119)
T 2jp9_A           37 YQCDFKDCERRFSRSDQLKRHQRR-HTG-VKPFQCKTCQRKFSRSDHLKTHTRTH   89 (119)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH-HHC-CCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             ccCCCCCCcCccCCHHHHHHHHHH-cCC-CCCccCCccCchhCCHHHHHHHHHHh
Confidence            5555  255533 23445555443 221 2334455555442  22455555443

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.72  E-value=0.4  Score=28.61  Aligned_cols=34  Identities=18%  Similarity=-0.008  Sum_probs=25.4

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..|. ...|..|+.. |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2yso_A           12 SHQCRECGEIFFQYVSLIEHQVL-HMG-QKNSGPSSG   46 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHH-HSC-CSCCCTTCC
T ss_pred             CEEccccChhhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            499999998554 5678889765 543 356789988

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.63  E-value=0.36  Score=28.93  Aligned_cols=34  Identities=15%  Similarity=-0.026  Sum_probs=25.3

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCccc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPLC   79 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPvC   79 (210)
                      .|.|+.|+..|. ...|..|+.. |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em8_A           12 PYKCVECGKGYKRRLDLDFHQRV-HTG-EKLSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HHC-CCCCCSCCC
T ss_pred             CeECcccCchhCCHHHHHHHHHH-HcC-CCCCCCCCC
Confidence            599999998554 5778889865 543 356789988

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}

Probab=86.56  E-value=0.18  Score=37.52  Aligned_cols=45  Identities=24%  Similarity=0.546  Sum_probs=29.4

Q ss_pred             ccCccccCcc-ccccccCCCCCc--chhHHHhHhhhhhccCCCcccccCcccccchh
Q 028361           31 IVDETEIDDD-VKACFPCPFCYL--EIEAHMICSHLQEEHCFEMKNAVCPLCAANLG   84 (210)
Q Consensus        31 ~~~~~~~d~d-~~~~f~CP~C~e--~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~   84 (210)
                      .++|++-|++ ....|+|| ||.  .+....|...        .-.+.||-|.-.|.
T Consensus         9 ~LeDm~~de~~~~y~ypCr-CGd~F~IteedLe~g--------e~iv~C~sCSL~Ik   56 (89)
T 2jr7_A            9 EIEDFQYDEDSETYFYPCP-CGDNFSITKEDLENG--------EDVATCPSCSLIIK   56 (89)
T ss_dssp             ETTTSEEETTTTEEEEECT-TSSEEEEEHHHHHHT--------CCEEECTTTCCEEE
T ss_pred             EHHHcEEcCCCCEEEEcCC-CCCEEEECHHHHhCC--------CEEEECCCCccEEE
Confidence            4566654433 34689999 997  5555556431        12578999998764

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=86.40  E-value=0.33  Score=32.33  Aligned_cols=16  Identities=25%  Similarity=0.607  Sum_probs=11.8

Q ss_pred             CccccccccCCCCCcc
Q 028361           38 DDDVKACFPCPFCYLE   53 (210)
Q Consensus        38 d~d~~~~f~CP~C~e~   53 (210)
                      |.+..++.+|||||+.
T Consensus        17 el~~lP~IrCpyCGyr   32 (48)
T 4ayb_P           17 QLKVLPGVRCPYCGYK   32 (48)
T ss_dssp             CSCCCSSSCCTTTCCS
T ss_pred             HHhhCCCcccCccCcE
Confidence            3456788899999874

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=85.95  E-value=1  Score=33.07  Aligned_cols=40  Identities=20%  Similarity=0.246  Sum_probs=26.6

Q ss_pred             ccccccccCCCCCc-------------chhHHHhHhhhhhccCCCcccccCcccccchhh
Q 028361           39 DDVKACFPCPFCYL-------------EIEAHMICSHLQEEHCFEMKNAVCPLCAANLGK   85 (210)
Q Consensus        39 ~d~~~~f~CP~C~e-------------~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~~   85 (210)
                      .+.+.+|.||.|.+             .|+...+..|+..       +..||+|...+..
T Consensus        17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-------~~~cP~~~~~l~~   69 (98)
T 1wgm_A           17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-------DQTDPFNRSPLTM   69 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-------SCBCTTTCSBCCT
T ss_pred             hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-------CCCCCCCCCCCCh
Confidence            45678999998765             2444444444432       4689999998764

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=85.86  E-value=0.6  Score=32.99  Aligned_cols=51  Identities=18%  Similarity=0.320  Sum_probs=38.5

Q ss_pred             cccCCC--CCcch-hHHHhHhhhhhccCCCcccccCc--ccccch--hhhHHhhHhhhhc
Q 028361           44 CFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCP--LCAANL--GKDAAEHFMVQHA   96 (210)
Q Consensus        44 ~f~CP~--C~e~~-d~~~L~~H~~~eH~~e~~~~vCP--vC~~~v--~~d~i~Hi~~qh~   96 (210)
                      .|.|++  |+..| ....|..|+.. |.. .+.-.|+  +|....  ..++..|+...++
T Consensus         6 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   63 (119)
T 2jp9_A            6 PFMCAYPGCNKRYFKLSHLQMHSRK-HTG-EKPYQCDFKDCERRFSRSDQLKRHQRRHTG   63 (119)
T ss_dssp             CBCCCSTTSCCCBSCHHHHHHHHHH-HHT-TCCEECCSTTCCCEESSHHHHHHHHHHHHC
T ss_pred             eeeCCCCCCcchhCCHHHHHHHHHh-hCC-CCCccCCCCCCcCccCCHHHHHHHHHHcCC
Confidence            599998  99955 57789999875 433 3557899  798874  4589999987554

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=85.54  E-value=0.33  Score=32.98  Aligned_cols=47  Identities=21%  Similarity=0.531  Sum_probs=28.6

Q ss_pred             ccccccccCCCCCcchhHHH-h-Hhh-----hhhccCCC-----cccccCcccccchhh
Q 028361           39 DDVKACFPCPFCYLEIEAHM-I-CSH-----LQEEHCFE-----MKNAVCPLCAANLGK   85 (210)
Q Consensus        39 ~d~~~~f~CP~C~e~~d~~~-L-~~H-----~~~eH~~e-----~~~~vCPvC~~~v~~   85 (210)
                      +++...+.||.|.+.|.... | |-|     |-..+-..     .....||+|...+..
T Consensus         7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            34667899999988665432 2 322     33322222     226789999998765

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=85.47  E-value=0.31  Score=31.96  Aligned_cols=34  Identities=21%  Similarity=0.506  Sum_probs=20.0

Q ss_pred             cccCCCCCcchhHHHhHhhhhhccCCCcccc--cCcccccc
Q 028361           44 CFPCPFCYLEIEAHMICSHLQEEHCFEMKNA--VCPLCAAN   82 (210)
Q Consensus        44 ~f~CP~C~e~~d~~~L~~H~~~eH~~e~~~~--vCPvC~~~   82 (210)
                      .|.|+.|+.-+|...--     ..+++.-.-  +||+|...
T Consensus         4 ~y~C~vCGyvyd~~~Gd-----~t~f~~lP~dw~CP~Cg~~   39 (46)
T 6rxn_A            4 KYVCNVCGYEYDPAEHD-----NVPFDQLPDDWCCPVCGVS   39 (46)
T ss_dssp             CEEETTTCCEECGGGGT-----TCCGGGSCTTCBCTTTCCB
T ss_pred             EEECCCCCeEEeCCcCC-----CcchhhCCCCCcCcCCCCc
Confidence            57788887766543111     155555443  88888764

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.35  E-value=0.19  Score=34.83  Aligned_cols=47  Identities=21%  Similarity=0.494  Sum_probs=28.3

Q ss_pred             cCccccccccCCCCCcchhHHHh--Hhh-----hhhccCCCcccccCcccccchhh
Q 028361           37 IDDDVKACFPCPFCYLEIEAHMI--CSH-----LQEEHCFEMKNAVCPLCAANLGK   85 (210)
Q Consensus        37 ~d~d~~~~f~CP~C~e~~d~~~L--~~H-----~~~eH~~e~~~~vCPvC~~~v~~   85 (210)
                      .+++....+.||.|.+.|....+  |-|     |-..+-  .+...||+|...+..
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~~   61 (81)
T 2csy_A            8 GSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHF--RATPRCYICDQPTGG   61 (81)
T ss_dssp             CSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHH--HHCSBCSSSCCBCCS
T ss_pred             CcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHH--HCCCcCCCcCccccc
Confidence            34556678999999886554321  333     222111  135689999998763

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.28  E-value=0.037  Score=36.05  Aligned_cols=43  Identities=14%  Similarity=0.167  Sum_probs=27.9

Q ss_pred             ccccCCCCCcchhHHHhHhhhhhccCCCcccccCcccccchh--hhHHhhHhh
Q 028361           43 ACFPCPFCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLG--KDAAEHFMV   93 (210)
Q Consensus        43 ~~f~CP~C~e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~--~d~i~Hi~~   93 (210)
                      ..|.|+.|+..|.......-        .+.-.|++|.....  .++..|+..
T Consensus        17 ~~~~C~~C~k~f~~~~~l~~--------~~~~~C~~C~~~f~~~~~l~~H~~~   61 (73)
T 2ctu_A           17 RSQKCSKCGIIFIRRSTLSR--------RKTPMCEKCRKDSCQEAALNKDEGN   61 (73)
T ss_dssp             SEEECSSSCCEEECCCCCCC--------SSSCCCHHHHHTCSCCCSSCCCSSC
T ss_pred             CCeeCCcccchhCCHHHhCc--------CCCCCCCCCChhhcCHHHHHHHHHh
Confidence            35999999986654332221        45678999987643  366666654

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=84.02  E-value=0.51  Score=37.13  Aligned_cols=46  Identities=22%  Similarity=0.432  Sum_probs=21.9

Q ss_pred             cccCC--CCCcchhHHHhHhhhhhccCCCcccccCcccccchh-hhHHhhHh
Q 028361           44 CFPCP--FCYLEIEAHMICSHLQEEHCFEMKNAVCPLCAANLG-KDAAEHFM   92 (210)
Q Consensus        44 ~f~CP--~C~e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~-~d~i~Hi~   92 (210)
                      .+.||  .|.+-+....|..|.. +=.|  +.+.||.|...+. .++..|+.
T Consensus        82 ~v~C~n~GC~~~~~~~~l~~H~~-~C~~--~~v~C~~C~~~~~r~~l~~H~~  130 (170)
T 3hcs_A           82 MVKCPNEGCLHKMELRHLEDHQA-HCEF--ALMDCPQCQRPFQKFHINIHIL  130 (170)
T ss_dssp             EEECCSTTCCCEEEGGGHHHHHT-TCTT--SEEECTTTCCEEEGGGHHHHHH
T ss_pred             ccCCCCCCCCceecHhHHHHHHh-cCCc--eeeECCCCChHHHHHHHHHHhh
Confidence            34553  3555555555555542 1111  3345666655433 25555553

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=83.88  E-value=0.76  Score=35.61  Aligned_cols=52  Identities=17%  Similarity=0.314  Sum_probs=38.4

Q ss_pred             ccccC--CCCCcch-hHHHhHhhhhhccCCCcccccCcc--cccchh--hhHHhhHhhhhc
Q 028361           43 ACFPC--PFCYLEI-EAHMICSHLQEEHCFEMKNAVCPL--CAANLG--KDAAEHFMVQHA   96 (210)
Q Consensus        43 ~~f~C--P~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPv--C~~~v~--~d~i~Hi~~qh~   96 (210)
                      ..|.|  +.|+..| ....|..|+.. |.. .+.-.||+  |...-.  .++..|+...+|
T Consensus       103 ~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          103 CVYVCHFENCGKAFKKHNQLKVHQFS-HTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             SCCEECSSSSCEECSSHHHHHHHHGG-GSS-SCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             ceeeCCCCCCccccCCHHHHHHHHHH-hCC-CCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            35899  7799844 56789999875 543 35578988  998744  489999987655

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=83.84  E-value=0.26  Score=33.69  Aligned_cols=47  Identities=19%  Similarity=0.427  Sum_probs=27.7

Q ss_pred             ccccccccCCCCCcchhHHH--hHhh-----hhhccCCC----cccccCcccccchhh
Q 028361           39 DDVKACFPCPFCYLEIEAHM--ICSH-----LQEEHCFE----MKNAVCPLCAANLGK   85 (210)
Q Consensus        39 ~d~~~~f~CP~C~e~~d~~~--L~~H-----~~~eH~~e----~~~~vCPvC~~~v~~   85 (210)
                      ++....+.||.|.+.|....  -|-|     |-..+-..    .....||+|...+..
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            34667889999988665432  2333     22211111    236789999888764

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=83.82  E-value=0.35  Score=33.01  Aligned_cols=48  Identities=25%  Similarity=0.698  Sum_probs=29.9

Q ss_pred             CccccccccCCCCCcchhHH-----HhHhhhhhccCCCc---ccccCcccccchhh
Q 028361           38 DDDVKACFPCPFCYLEIEAH-----MICSHLQEEHCFEM---KNAVCPLCAANLGK   85 (210)
Q Consensus        38 d~d~~~~f~CP~C~e~~d~~-----~L~~H~~~eH~~e~---~~~vCPvC~~~v~~   85 (210)
                      +++....+.||.|.+.|+..     .-|-|.-=.++...   ++..||+|...+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A            9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence            34456678999998877532     13666433333321   34689999887654

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A

Probab=83.69  E-value=0.29  Score=35.92  Aligned_cols=46  Identities=24%  Similarity=0.524  Sum_probs=29.6

Q ss_pred             CccCccccCcc-ccccccCCCCCc--chhHHHhHhhhhhccCCCcccccCcccccchh
Q 028361           30 SIVDETEIDDD-VKACFPCPFCYL--EIEAHMICSHLQEEHCFEMKNAVCPLCAANLG   84 (210)
Q Consensus        30 ~~~~~~~~d~d-~~~~f~CP~C~e--~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~   84 (210)
                      ..++|++-|++ ....|+|| ||.  .+....|...        --.+.||-|.-.|.
T Consensus         8 v~leDm~~de~~~~y~ypCr-CGd~F~it~edL~~g--------e~iv~C~sCSL~I~   56 (83)
T 1yop_A            8 IEIEDMTFEPENQMFTYPCP-CGDRFQIYLDDMFEG--------EKVAVCPSCSLMID   56 (83)
T ss_dssp             CBGGGSEEETTTTEEEEEET-TTEEEEEEHHHHHTT--------CCEEECSSSCCEEE
T ss_pred             EEHHHcEEcCCCCEEEEeCC-CCCeEEECHHHHhCC--------CEEEECCCCccEEE
Confidence            34566654444 34689999 997  5555556421        12578999998754

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=83.59  E-value=1  Score=30.50  Aligned_cols=51  Identities=20%  Similarity=0.337  Sum_probs=34.9

Q ss_pred             ccCCC--CCcchh-HHHhHhhhhhccCCCc-----ccccCc--ccccch--hhhHHhhHhhhh
Q 028361           45 FPCPF--CYLEIE-AHMICSHLQEEHCFEM-----KNAVCP--LCAANL--GKDAAEHFMVQH   95 (210)
Q Consensus        45 f~CP~--C~e~~d-~~~L~~H~~~eH~~e~-----~~~vCP--vC~~~v--~~d~i~Hi~~qh   95 (210)
                      |.|-.  |++.|+ ...|..|+..+|-...     .+-+|.  -|....  ...|+.||+..|
T Consensus         2 l~C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CeEeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            34444  777555 4569999998896543     256776  676542  348999999876

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=83.51  E-value=0.74  Score=34.39  Aligned_cols=52  Identities=17%  Similarity=0.266  Sum_probs=38.4

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcc--cccch--hhhHHhhHhhhhcc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPL--CAANL--GKDAAEHFMVQHAS   97 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPv--C~~~v--~~d~i~Hi~~qh~~   97 (210)
                      .|.|+.|+..| ....|..|+.. |.. .+.-.|++  |....  ..++..|+...++.
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~  118 (155)
T 2rpc_A           62 WEECPREGKSFKAKYKLVNHIRV-HTG-EKPFPCPFPGCGKIFARSENLKIHKRTHTGE  118 (155)
T ss_dssp             BTTCTTSSCCCSSHHHHHHHTHH-HHC-CCSEECSCTTTCCEESCHHHHHHHHTTTCSS
T ss_pred             ccCCCCcccccCCHHHHHHHHHh-cCC-CCcccCCcCCCCCccCCHHHHHHHHHhhCCC
Confidence            38999999855 56778999876 432 35678998  98874  34889999866553

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=83.16  E-value=1.2  Score=36.57  Aligned_cols=42  Identities=14%  Similarity=0.230  Sum_probs=30.2

Q ss_pred             CccccccccCCCCC------------cchhHHHhHhhhhhccCCCcccccCcccccchhh
Q 028361           38 DDDVKACFPCPFCY------------LEIEAHMICSHLQEEHCFEMKNAVCPLCAANLGK   85 (210)
Q Consensus        38 d~d~~~~f~CP~C~------------e~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~~   85 (210)
                      ..+.+..|.||.|.            .-|+...+..|+...+      ..||+|...+..
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~------~tcP~t~~~l~~  153 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG------HFDPVTRSPLTQ  153 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC------SBCTTTCCBCCG
T ss_pred             ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC------CCCCCCcCCCCh
Confidence            45678899999864            4567777777776521      269999998764

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.39  E-value=0.65  Score=29.56  Aligned_cols=18  Identities=11%  Similarity=0.471  Sum_probs=13.2

Q ss_pred             ccccccccCCCCCcchhH
Q 028361           39 DDVKACFPCPFCYLEIEA   56 (210)
Q Consensus        39 ~d~~~~f~CP~C~e~~d~   56 (210)
                      ++....+.||.|.+.+..
T Consensus        10 ~~~~~~~~C~IC~~~~~~   27 (58)
T 2ecj_A           10 ENLQVEASCSVCLEYLKE   27 (58)
T ss_dssp             SCSCCCCBCSSSCCBCSS
T ss_pred             hccccCCCCccCCcccCc
Confidence            346677899999886654

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.55  E-value=0.3  Score=33.38  Aligned_cols=47  Identities=21%  Similarity=0.509  Sum_probs=26.8

Q ss_pred             ccccccccCCCCCcchhHHH--hHhhh-----hhccCC----CcccccCcccccchhh
Q 028361           39 DDVKACFPCPFCYLEIEAHM--ICSHL-----QEEHCF----EMKNAVCPLCAANLGK   85 (210)
Q Consensus        39 ~d~~~~f~CP~C~e~~d~~~--L~~H~-----~~eH~~----e~~~~vCPvC~~~v~~   85 (210)
                      ++....+.||.|.+.+....  -|-|.     -..+-.    ......||+|...+..
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            45667899999988665321  13332     111110    1235789999887764

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=81.50  E-value=0.75  Score=32.77  Aligned_cols=29  Identities=24%  Similarity=0.568  Sum_probs=24.7

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMK   72 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~   72 (210)
                      .|+|++|+..| ....|..|+...|+.|.+
T Consensus        56 ~~~C~~C~k~F~~~~~L~~H~~~~H~~E~R   85 (85)
T 2lv2_A           56 VFPCKYCPATFYSSPGLTRHINKCHPSENR   85 (85)
T ss_dssp             SEECTTSSCEESSHHHHHHHHHTTCTTCCC
T ss_pred             ccCCCCCCCEeCCHHHHHHhCcccCcCCCC
Confidence            59999999955 778899999999998754

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=81.18  E-value=0.22  Score=35.21  Aligned_cols=46  Identities=24%  Similarity=0.485  Sum_probs=28.3

Q ss_pred             CccccccccCCCCCcchhH-HHh--Hhh-----hhhccCCCcccccCcccccch
Q 028361           38 DDDVKACFPCPFCYLEIEA-HMI--CSH-----LQEEHCFEMKNAVCPLCAANL   83 (210)
Q Consensus        38 d~d~~~~f~CP~C~e~~d~-~~L--~~H-----~~~eH~~e~~~~vCPvC~~~v   83 (210)
                      .+++...+.||.|.+.|.. +.|  |-|     |-..+-.......||+|...+
T Consensus         7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A            7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            3567788999999885543 233  333     222222223446899999885

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=81.12  E-value=0.63  Score=32.90  Aligned_cols=44  Identities=20%  Similarity=0.498  Sum_probs=26.9

Q ss_pred             ccccccCCCCCcchhHH---Hh---Hhh-----hhhccCCCcccccCcccccchhh
Q 028361           41 VKACFPCPFCYLEIEAH---MI---CSH-----LQEEHCFEMKNAVCPLCAANLGK   85 (210)
Q Consensus        41 ~~~~f~CP~C~e~~d~~---~L---~~H-----~~~eH~~e~~~~vCPvC~~~v~~   85 (210)
                      ...++.||.|.+.++..   .+   |-|     |-... .+..+..||+|...+..
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~-~~~~~~~CP~CR~~~~~   62 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRI-RTDENGLCPACRKPYPE   62 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHH-TTSSCSBCTTTCCBCSS
T ss_pred             cccCCcCCccCccCccccccccccCCCCCcCHHHHHHH-HhcCCCCCCCCCCccCC
Confidence            44568899999877543   22   443     22211 12246789999988765

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.94  E-value=1.5  Score=25.83  Aligned_cols=33  Identities=15%  Similarity=0.159  Sum_probs=22.9

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPL   78 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPv   78 (210)
                      .|.|++|+..| ....|..|+.. |..+ ++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2ep1_A           12 PYECSDCGKSFIKKSQLHVHQRI-HTGE-NPSGPSS   45 (46)
T ss_dssp             SSCCSSSCCCCSSHHHHHHHHGG-GSSS-CCCSSSC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHH-hCCC-CCCCCCC
Confidence            48999999855 45678888765 6543 5567765

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.84  E-value=0.53  Score=30.91  Aligned_cols=46  Identities=20%  Similarity=0.548  Sum_probs=27.3

Q ss_pred             ccccccccCCCCCcchhHH---------HhHhhhhhccCCC---cccccCcccccchh
Q 028361           39 DDVKACFPCPFCYLEIEAH---------MICSHLQEEHCFE---MKNAVCPLCAANLG   84 (210)
Q Consensus        39 ~d~~~~f~CP~C~e~~d~~---------~L~~H~~~eH~~e---~~~~vCPvC~~~v~   84 (210)
                      +.....+.||.|.+.|...         .-|-|.-=..+.+   .++..||+|...+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            3456678999999988754         2244421111111   12458999987764

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.53  E-value=1.4  Score=26.04  Aligned_cols=33  Identities=18%  Similarity=0.134  Sum_probs=22.4

Q ss_pred             cccCCCCCcchh-HHHhHhhhhhccCCCcccccCcc
Q 028361           44 CFPCPFCYLEIE-AHMICSHLQEEHCFEMKNAVCPL   78 (210)
Q Consensus        44 ~f~CP~C~e~~d-~~~L~~H~~~eH~~e~~~~vCPv   78 (210)
                      .|.|++|+..|. ...|..|+.. |..+ ++-.|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2yti_A           12 PYKCNECGKVFTQNSHLARHRGI-HTGE-KPSGPSS   45 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHTT-TSCS-CCSSTTC
T ss_pred             CeECCCCCcccCChhHHHHHhHh-cCCC-CCCCCCC
Confidence            489999998554 4667888654 6543 5566764

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.41  E-value=1.5  Score=25.98  Aligned_cols=33  Identities=18%  Similarity=0.147  Sum_probs=22.4

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcc
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPL   78 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPv   78 (210)
                      .|.|++|+..| ....|..|+.. |..+ ++-.|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2enf_A           12 PYKCNECGKVFTQNSHLVRHRGI-HTGE-KPSGPSS   45 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHTT-TTTS-SCCCCSC
T ss_pred             CeECCCCCcccCCHHHHHHHHHh-hCCC-CCCCCCC
Confidence            48999999855 45677888654 6543 5566764

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=80.08  E-value=1.6  Score=28.35  Aligned_cols=51  Identities=16%  Similarity=0.292  Sum_probs=36.5

Q ss_pred             cccccccCCC--CCcch-hHHHhHhhhhhccCCCcccccCcc--cccchh--hhHHhhHh
Q 028361           40 DVKACFPCPF--CYLEI-EAHMICSHLQEEHCFEMKNAVCPL--CAANLG--KDAAEHFM   92 (210)
Q Consensus        40 d~~~~f~CP~--C~e~~-d~~~L~~H~~~eH~~e~~~~vCPv--C~~~v~--~d~i~Hi~   92 (210)
                      .....|.|++  |+.-| ....|..|+.. |.- .+.-.|++  |.....  .++..|+.
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAHTRT-HTG-EKPFSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHHHHH-HSS-SCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred             cccCceeCCCCCCccccCCHHHHHHHHHh-cCC-CCCccCCCCCCCcccCCHHHHHhHhh
Confidence            3456799998  99955 46788899865 543 35678976  998754  37777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	94.29
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	93.08
d1wgea1	70	DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus	92.43
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	91.46
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	90.56
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	90.0
d1ywsa1	82	Diphthamide biosynthesis protein 3, DPH3 {Baker's	88.41
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	83.78
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	82.71
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	82.55
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	81.86
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	81.69
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	80.26

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.0087  Score=40.29  Aligned_cols=46  Identities=26%  Similarity=0.620  Sum_probs=34.1

Q ss_pred             ccccCccccccccCCCCCc---chhHHHhHhhhhhccCCCcccccCcccccchhhh
Q 028361           34 ETEIDDDVKACFPCPFCYL---EIEAHMICSHLQEEHCFEMKNAVCPLCAANLGKD   86 (210)
Q Consensus        34 ~~~~d~d~~~~f~CP~C~e---~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~~d   86 (210)
                      +.+-+.-.++.|.||.|+.   .+|+..|.+..       ...-.|-+|..-|-+|
T Consensus         4 ~~~rd~~~~~~y~Cp~C~~~ys~Lda~~L~d~~-------~~~F~C~~C~~el~eD   52 (62)
T d1vd4a_           4 TDERDSTNRASFKCPVCSSTFTDLEANQLFDPM-------TGTFRCTFCHTEVEED   52 (62)
T ss_dssp             CCSSSCCSSSEEECSSSCCEEEHHHHHHHEETT-------TTEEBCSSSCCBCEEC
T ss_pred             hhhhccccCCceECCCCCCCcchhhHHHhcCcC-------CCeEEecCCCCEEecC
Confidence            3344555799999999986   88888887643       3356899998877554

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=93.08  E-value=0.01  Score=32.95  Aligned_cols=11  Identities=55%  Similarity=1.748  Sum_probs=7.8

Q ss_pred             ccCCCCCcchh
Q 028361           45 FPCPFCYLEIE   55 (210)
Q Consensus        45 f~CP~C~e~~d   55 (210)
                      ||||||..+|.
T Consensus         2 ypcp~cfkeft   12 (26)
T d2drpa2           2 YPCPFCFKEFT   12 (26)
T ss_dssp             EECTTTCCEES
T ss_pred             cCCchhhHHhc
Confidence            67777776664

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.43  E-value=0.024  Score=38.91  Aligned_cols=45  Identities=22%  Similarity=0.527  Sum_probs=29.0

Q ss_pred             ccCccccCcc-ccccccCCCCCcchhH--HHhHhhhhhccCCCcccccCcccccchh
Q 028361           31 IVDETEIDDD-VKACFPCPFCYLEIEA--HMICSHLQEEHCFEMKNAVCPLCAANLG   84 (210)
Q Consensus        31 ~~~~~~~d~d-~~~~f~CP~C~e~~d~--~~L~~H~~~eH~~e~~~~vCPvC~~~v~   84 (210)
                      .|+|++-|+| ...+|||| ||..|.+  ..|-++        .-.+.||-|.-.+.
T Consensus         9 ~leD~~~dee~~~~~ypCp-CGd~F~it~~dLe~g--------e~V~~C~sCSL~ik   56 (70)
T d1wgea1           9 EIEDFQYDEDSETYFYPCP-CGDNFAITKEDLENG--------EDVATCPSCSLIIK   56 (70)
T ss_dssp             EGGGSCCBTTTTEEEECCS-SSSCEEEEHHHHHTT--------CCEEECTTTCCEEE
T ss_pred             EeeeeeEeCCCCEEEeCCC-CCCeEEECHHHHhCC--------CeEEeCCCCceEEE
Confidence            4567765555 34689999 9975544  444332        12356999998764

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.029  Score=39.89  Aligned_cols=47  Identities=13%  Similarity=0.130  Sum_probs=28.0

Q ss_pred             ccccccccCCCCCc-chhHHHh-Hhh-hhhccCC---CcccccCcccccchhh
Q 028361           39 DDVKACFPCPFCYL-EIEAHMI-CSH-LQEEHCF---EMKNAVCPLCAANLGK   85 (210)
Q Consensus        39 ~d~~~~f~CP~C~e-~~d~~~L-~~H-~~~eH~~---e~~~~vCPvC~~~v~~   85 (210)
                      .|.+.+|.||.|++ =.|-+.+ |+| .-+..+.   -.++..||+|...+..
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            46788999999987 3333333 333 1111110   1235689999998875

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.56  E-value=0.033  Score=37.42  Aligned_cols=48  Identities=15%  Similarity=0.366  Sum_probs=26.9

Q ss_pred             CccccccccCCCCCcchhH-HHh-HhhhhhccC----CCcccccCcccccchhh
Q 028361           38 DDDVKACFPCPFCYLEIEA-HMI-CSHLQEEHC----FEMKNAVCPLCAANLGK   85 (210)
Q Consensus        38 d~d~~~~f~CP~C~e~~d~-~~L-~~H~~~eH~----~e~~~~vCPvC~~~v~~   85 (210)
                      ..|.+.+|.||.|.+-|.- +.| |-|.-...+    ++.....||+|...++.
T Consensus         2 ~peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CCCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCc
Confidence            4568889999998773322 111 222111111    12344579999988654

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.00  E-value=0.12  Score=34.79  Aligned_cols=40  Identities=18%  Similarity=0.238  Sum_probs=26.4

Q ss_pred             cccccccCCCCCc------------chhHHHhHhhhhhccCCCcccccCcccccchhh
Q 028361           40 DVKACFPCPFCYL------------EIEAHMICSHLQEEHCFEMKNAVCPLCAANLGK   85 (210)
Q Consensus        40 d~~~~f~CP~C~e------------~~d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~~   85 (210)
                      |.+.+|.||.|.+            -|+...|..|+..      ....||+|...+..
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~------~~~~cP~c~~~l~~   54 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQR------VGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHH------TCSSCTTTCCCCCG
T ss_pred             CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhc------CCccCCCccccccc
Confidence            4667888888865            3444555555543      33579999998765

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.41  E-value=0.062  Score=37.81  Aligned_cols=47  Identities=21%  Similarity=0.504  Sum_probs=29.2

Q ss_pred             CccCccccCcc-ccccccCCCCCcchhH--HHhHhhhhhccCCCcccccCcccccchhh
Q 028361           30 SIVDETEIDDD-VKACFPCPFCYLEIEA--HMICSHLQEEHCFEMKNAVCPLCAANLGK   85 (210)
Q Consensus        30 ~~~~~~~~d~d-~~~~f~CP~C~e~~d~--~~L~~H~~~eH~~e~~~~vCPvC~~~v~~   85 (210)
                      ..++|++-|+| ...+|||| ||..|.+  ..|..+        .-.+.||-|.-+|.-
T Consensus         7 v~LeDm~~ded~~~~~ypCr-CGd~F~it~~dLe~g--------e~v~~C~sCSL~IrV   56 (82)
T d1ywsa1           7 IEIEDMTFEPENQMFTYPCP-CGDRFQIYLDDMFEG--------EKVAVCPSCSLMIDV   56 (82)
T ss_dssp             EETTTSEEETTTTEEEECCS-SSSCEEEEHHHHHTT--------CCEEEETTTTEEEEE
T ss_pred             EEecceEEeCCCCEEEeccc-cCCeEEEcHHHHhCC--------CeEEeCCCCceEEEE
Confidence            34567765444 45689999 9975544  334332        123469999988643

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.78  E-value=0.26  Score=36.56  Aligned_cols=49  Identities=24%  Similarity=0.331  Sum_probs=35.2

Q ss_pred             ccccccccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccchhhhHHhhHh
Q 028361           39 DDVKACFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANLGKDAAEHFM   92 (210)
Q Consensus        39 ~d~~~~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v~~d~i~Hi~   92 (210)
                      ++-....+|-||.+-| ++..+..||.+.|-|+-..++     .+.+.|+.+-|.
T Consensus        10 ~~e~~~~~CLFCd~~f~s~~~~l~H~k~~H~FD~~~~~-----~~~~LDfY~~IK   59 (121)
T d1wira_          10 AHGRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMV-----HKHGLEFYGYIK   59 (121)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHHHHSSCCCHHHHH-----HHTTCCHHHHHH
T ss_pred             CCCcccceecccCCccCCHHHHHHHHHHhhCCCHHHHH-----HHcCCCccceEE
Confidence            3345567799998854 789999999999999776532     345556555544

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.71  E-value=0.21  Score=31.91  Aligned_cols=42  Identities=26%  Similarity=0.616  Sum_probs=28.9

Q ss_pred             ccccCCCCCcchhHHHh--HhhhhhccCCCcccccCcccccchh
Q 028361           43 ACFPCPFCYLEIEAHMI--CSHLQEEHCFEMKNAVCPLCAANLG   84 (210)
Q Consensus        43 ~~f~CP~C~e~~d~~~L--~~H~~~eH~~e~~~~vCPvC~~~v~   84 (210)
                      ..+.||.|.+.|....+  |-|.-=..+.+..+..||+|...+.
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~~~~CP~Cr~~~~   48 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcCCCcCcCCCCccc
Confidence            34689999886654333  4565555566777789999988764

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=82.55  E-value=0.25  Score=27.10  Aligned_cols=21  Identities=24%  Similarity=0.740  Sum_probs=17.1

Q ss_pred             cCcccccchhh--hHHhhHhhhh
Q 028361           75 VCPLCAANLGK--DAAEHFMVQH   95 (210)
Q Consensus        75 vCPvC~~~v~~--d~i~Hi~~qh   95 (210)
                      .||+|-+..++  ||++|+..-|
T Consensus         3 pcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           3 PCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHT
T ss_pred             CCchhhHHhccccCceEEEEEec
Confidence            59999998654  9999997655

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.86  E-value=0.11  Score=32.55  Aligned_cols=16  Identities=31%  Similarity=0.752  Sum_probs=11.6

Q ss_pred             cccccCcccccchhhh
Q 028361           71 MKNAVCPLCAANLGKD   86 (210)
Q Consensus        71 ~~~~vCPvC~~~v~~d   86 (210)
                      ..+..||+|...+..|
T Consensus        37 ~~~~~CP~CR~~~~~d   52 (52)
T d1ur6b_          37 DENGLCPACRKPYPED   52 (52)
T ss_dssp             TSCCBCTTTCCBCSCC
T ss_pred             hcCCCCCccCCcCCCC
Confidence            3456799999877654

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.69  E-value=0.36  Score=27.44  Aligned_cols=27  Identities=19%  Similarity=0.639  Sum_probs=22.7

Q ss_pred             cccCCCCCc-chhHHHhHhhhhhccCCC
Q 028361           44 CFPCPFCYL-EIEAHMICSHLQEEHCFE   70 (210)
Q Consensus        44 ~f~CP~C~e-~~d~~~L~~H~~~eH~~e   70 (210)
                      -|.|+||.. --|.+-|-.|+...|.-|
T Consensus         2 py~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccccccccccccchhhhhhhhcccccC
Confidence            378999966 889999999999888654

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.26  E-value=0.53  Score=28.94  Aligned_cols=46  Identities=17%  Similarity=0.379  Sum_probs=35.4

Q ss_pred             cccCCCCCcch-hHHHhHhhhhhccCCCcccccCcccccch--hhhHHhhHh
Q 028361           44 CFPCPFCYLEI-EAHMICSHLQEEHCFEMKNAVCPLCAANL--GKDAAEHFM   92 (210)
Q Consensus        44 ~f~CP~C~e~~-d~~~L~~H~~~eH~~e~~~~vCPvC~~~v--~~d~i~Hi~   92 (210)
                      .|+|. |+..| .-..|..|.. -|.-+ ++-.|++|...-  ..++..|++
T Consensus         3 ~y~C~-Cgk~F~~~~~l~~H~~-~Ht~e-kpy~C~~C~k~F~~~~~L~~H~r   51 (53)
T d2csha1           3 LYPCQ-CGKSFTHKSQRDRHMS-MHLGL-RPYGCGVCGKKFKMKHHLVGHMK   51 (53)
T ss_dssp             CEECT-TSCEESSHHHHHHHHH-HHSCC-CSEECTTTSCEESSSHHHHHHHT
T ss_pred             CCCCC-CCCeECCHHHhHHHhh-ccccc-cCCcCCCcCCEecCHHHHHHHHh
Confidence            58996 99954 5678999975 58664 678999999974  448888875