Citrus Sinensis ID: 028390

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MTMKKEEQATVTISAEYLCSHEVSELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG
Secondary Structure (PSIPRED)
cccccccEEEEEEccccccccccccccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEccHHccccccccccccccEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MTMKKEEQATVTISAEYLCSHEVSELVSADSVLHYEVTLIdftkekpfwkmdtHEKIEACErkkhdgnllfrAGKYWRASKKYEKAAKIIEFHhsftddekhqanglrlscylNNAACKLKLEDYSETSSLCTKvleleplnVKALYRRSQAHLKTSELEKAEADIKRAltidpnnrVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG
Flexible Loop (DISEMBL)
mtmkkeeqatVTISAEYLCSHEVSELVSADSVLHYEVTLIdftkekpfwKMDTHEKIEacerkkhdgnllfRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEAdikraltidpnnrvvKLVYMELKDKQREYAKYQAEIFGTMLSKMG
Low Complexity Region (SEG)
MTMKKEEQATVTISAEYLCSHEVSELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG
Disordered region (IsUnstruct)
**********VTISAEYLCSHEVSELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA***********ADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGT******
Disordered Region (DISOPRED)
MTMKKEEQATVTISAEYLCSHEVSELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK**************GTMLSKM*
Disordered Region (DISEMBL)
**********VTISAEYLCSHEVSELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG
Disordered Region (DISPRO)
****KEEQATVTISAEYLCSHEVSELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTMKKEEQATVTISAEYLCSHEVSELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVxxxxxxxxxxxxxxxxxxxxxIFGTMLSKMG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
Q38931	551	Peptidyl-prolyl cis-trans	yes	no	0.995	0.377	0.523	8e-56
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.995	0.359	0.504	3e-55
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.995	0.372	0.535	2e-53
Q95L05	457	Peptidyl-prolyl cis-trans	N/A	no	0.985	0.450	0.322	3e-26
Q9XT11	457	Peptidyl-prolyl cis-trans	N/A	no	0.985	0.450	0.322	5e-26
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	no	0.985	0.450	0.317	5e-26
Q13451	457	Peptidyl-prolyl cis-trans	yes	no	0.985	0.450	0.317	1e-25
Q02790	459	Peptidyl-prolyl cis-trans	no	no	0.985	0.448	0.322	1e-25
Q64378	456	Peptidyl-prolyl cis-trans	yes	no	0.995	0.456	0.309	3e-25
Q9TRY0	459	Peptidyl-prolyl cis-trans	no	no	0.985	0.448	0.312	4e-25

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  216 bits (550), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 111/212 (52%), Positives = 148/212 (69%), Gaps = 4/212 (1%)

Query: 1   MTMKKEEQATVTISAEYLCSHEVSE----LVSADSVLHYEVTLIDFTKEKPFWKMDTHEK 56
           M MKK E A VTI  EY      S+    +V  +S + YEV L+ F KE+  W M+T EK
Sbjct: 337 MKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEK 396

Query: 57  IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA 116
           IEA  +KK +GN  F+ GKY  ASK+YEKA K IE+  SF+++EK QA  L+++C LN+A
Sbjct: 397 IEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDA 456

Query: 117 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           ACKLKL+DY +   LCTKVLELE  NVKALYRR+QA+++ S+L+ AE D+K+AL IDPNN
Sbjct: 457 ACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNN 516

Query: 177 RVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208
           R VKL    LK+K +E+ K +A+ +G M +K+
Sbjct: 517 REVKLEQKRLKEKMKEFNKKEAKFYGNMFAKL 548

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  214 bits (546), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/212 (50%), Positives = 153/212 (72%), Gaps = 4/212 (1%)

Query: 1   MTMKKEEQATVTISAEYLCSHEVSE----LVSADSVLHYEVTLIDFTKEKPFWKMDTHEK 56
           M MKK E A +TIS EY      S+    ++  +S ++YEV L+ F KEK  W M+T E+
Sbjct: 347 MGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSFIKEKESWDMNTQER 406

Query: 57  IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA 116
           IEA  +KK +GN+LF+AGKY RASK+YE+  K IE+  +F ++EK ++  L+++C LN+A
Sbjct: 407 IEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLNDA 466

Query: 117 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           ACKLKL+DY E + L TKVLE++  NVKA+YRR+ A+L+T++L+ AE DIK+AL IDP+N
Sbjct: 467 ACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDN 526

Query: 177 RVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208
           + VK+ Y +LK+K +EY K  A+ +  MLSKM
Sbjct: 527 KEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKM 558

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 113/211 (53%), Positives = 146/211 (69%), Gaps = 3/211 (1%)

Query: 1   MTMKKEEQATVTISAEYLCSHEVSE---LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKI 57
           + MKK E A VTI  EY      S+   +V  +S + YEV L+ F K+K  W ++  EKI
Sbjct: 339 LNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKDKESWDLNNSEKI 398

Query: 58  EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAA 117
           EA   KK +GN LF++GKY RASK+YEKAAK IE+  SF++DEK Q+  L+++C LNNAA
Sbjct: 399 EAAGTKKEEGNALFKSGKYARASKRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAA 458

Query: 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177
           CKLKL+DY +   LCTKVLEL+  NVKALYRR+QA+ + ++LE AE DIK+AL IDP NR
Sbjct: 459 CKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYTQLADLELAEVDIKKALEIDPENR 518

Query: 178 VVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208
            VKL Y  LK+K +E  K  A+ +  M SKM
Sbjct: 519 DVKLTYKTLKEKIKEINKKDAKFYSNMFSKM 549

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q95L05|FKBP5_CHLAE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Chlorocebus aethiops GN=FKBP5 PE=2 SV=1

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 104/208 (50%), Gaps = 2/208 (0%)

Query: 3   MKKEEQATVTISAEYLCSHEVSE--LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
           M++EEQ  + +   Y           +  ++ L YEVTL  F K K  W+MDT EK+E  
Sbjct: 209 MQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQA 268

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
              K  G + F+ GKY RA  +Y K    +E  +  ++ E   +    L+ +LN A C L
Sbjct: 269 AIVKEKGTVYFKGGKYMRAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328

Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
           KL +Y++    C K L L+  N K LYRR +A L  +E E A+ D ++ L ++P N+  +
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388

Query: 181 LVYMELKDKQREYAKYQAEIFGTMLSKM 208
           L     + K +E+ +    I+  M  K 
Sbjct: 389 LQISMCQKKAKEHNERDRRIYANMFKKF 416

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP. Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Chlorocebus aethiops (taxid: 9534)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XT11|FKBP5_AOTNA Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Aotus nancymaae GN=FKBP5 PE=2 SV=2

 Score =  117 bits (294), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 104/208 (50%), Gaps = 2/208 (0%)

Query: 3   MKKEEQATVTISAEYLCSHEVSE--LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
           M++EEQ  + +   Y           +  ++ L YEVTL  F K K  W+MDT EK+E  
Sbjct: 209 MQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQA 268

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
              K  G L F+ GKY +A  +Y K    +E  +  ++ E   +    L+ +LN A C L
Sbjct: 269 AIVKEKGTLYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328

Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
           KL +Y++    C K L L+  N K LYRR +A L  +E E A+ D ++ L ++P N+  +
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388

Query: 181 LVYMELKDKQREYAKYQAEIFGTMLSKM 208
           L     + K +E+ +    I+  M  K 
Sbjct: 389 LQIFMCQKKAKEHNERDRRIYANMFKKF 416

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Aotus nancymaae (taxid: 37293)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score =  117 bits (293), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 106/208 (50%), Gaps = 2/208 (0%)

Query: 3   MKKEEQATVTISAEYLCSHEVSE--LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
           M++EEQ  + +   Y           +  ++ L YEVTL  F K K  W+MDT EK+E  
Sbjct: 209 MQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQA 268

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
              K +G + F+ GKY +A  +Y K    +E  +  ++ E   +    L+ +LN A C L
Sbjct: 269 AIVKEEGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328

Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
           KL +Y++    C K L L+  N K LYRR +A L  +E E A+ D ++ L ++P N+  +
Sbjct: 329 KLREYAKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388

Query: 181 LVYMELKDKQREYAKYQAEIFGTMLSKM 208
           L  +  + K +E+ +    I+  M  K 
Sbjct: 389 LQIVVCQKKAKEHNERDRRIYANMFKKF 416

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q13451|FKBP5_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Homo sapiens GN=FKBP5 PE=1 SV=2

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 104/208 (50%), Gaps = 2/208 (0%)

Query: 3   MKKEEQATVTISAEYLCSHEVSE--LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
           M++EEQ  + +   Y           +  ++ L YEVTL  F K K  W+MDT EK+E  
Sbjct: 209 MQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQA 268

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
              K  G + F+ GKY +A  +Y K    +E  +  ++ E   +    L+ +LN A C L
Sbjct: 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328

Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
           KL +Y++    C K L L+  N K LYRR +A L  +E E A+ D ++ L ++P N+  +
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388

Query: 181 LVYMELKDKQREYAKYQAEIFGTMLSKM 208
           L     + K +E+ +    I+  M  K 
Sbjct: 389 LQISMCQKKAKEHNERDRRIYANMFKKF 416

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score =  116 bits (290), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 110/208 (52%), Gaps = 2/208 (0%)

Query: 3   MKKEEQATVTISAEYLCSHEVSE--LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
           M+K E + V +   Y       E   +  ++ L YE+ L  F K K  W+M++ EK+E  
Sbjct: 211 MEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQS 270

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
              K  G + F+ GKY +A  +Y+K    +E+  SF+++E  +A  LRL+ +LN A C L
Sbjct: 271 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 330

Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
           KL+ +S     C K LEL+  N K L+RR +AHL  ++ E A AD ++ L + PNN+  K
Sbjct: 331 KLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 390

Query: 181 LVYMELKDKQREYAKYQAEIFGTMLSKM 208
                 + + R     + +++  M  ++
Sbjct: 391 TQLAVCQQRIRRQLAREKKLYANMFERL 418

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q64378|FKBP5_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Mus musculus GN=Fkbp5 PE=1 SV=1

 Score =  114 bits (286), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 2/210 (0%)

Query: 1   MTMKKEEQATVTISAEYLCSHEVSELVSAD--SVLHYEVTLIDFTKEKPFWKMDTHEKIE 58
           + M++EEQ  + +   Y            D  + L YEVTL  F K K  W+MDT EK+ 
Sbjct: 207 VKMQREEQCILYLGPRYGFGEAGKPKFGIDPNAELMYEVTLKSFEKAKESWEMDTKEKLT 266

Query: 59  ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC 118
                K  G + F+ GKY +A  +Y K    +E  +  ++ E   +    L+ +LN A C
Sbjct: 267 QAAIVKEKGTVYFKGGKYTQAVIQYRKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326

Query: 119 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 178
            LKL +Y++    C K L L+  N K LYRR +A L  ++ E A+ D ++ L ++P NR 
Sbjct: 327 YLKLREYNKAVECCDKALGLDSANEKGLYRRGEAQLLMNDFESAKGDFEKVLAVNPQNRA 386

Query: 179 VKLVYMELKDKQREYAKYQAEIFGTMLSKM 208
            +L     + K +E+ +    ++  M  K 
Sbjct: 387 ARLQISMCQRKAKEHNERDRRVYANMFKKF 416

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score =  114 bits (286), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 112/208 (53%), Gaps = 2/208 (0%)

Query: 3   MKKEEQATVTISAEYLCSHEVSE--LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
           M+K E + V +   Y       E   +  ++ L YE+ L  F K K  W+M + EK+E  
Sbjct: 211 MEKGEHSIVYLKPRYAFGSAGKEKFQIPPNAELKYEIHLKSFEKAKESWEMSSEEKLEQS 270

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
              K  G + F+ GKY +A  +Y+K    +E+  SF+D++  +A  LRL+ +LN A C L
Sbjct: 271 TIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAEKAQALRLASHLNLAMCHL 330

Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
           KL+ +S     C K LEL+  N K L+RR +AHL  ++ + A AD ++ L + P+N+  K
Sbjct: 331 KLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNKAAK 390

Query: 181 LVYMELKDKQREYAKYQAEIFGTMLSKM 208
              +  + + R+  + + +++  M  ++
Sbjct: 391 AQLVVCQQRIRKQLEKEKKLYANMFERL 418

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
255570494	523	peptidylprolyl isomerase, putative [Rici	1.0	0.399	0.698	6e-82
359481570	523	PREDICTED: LOW QUALITY PROTEIN: 70 kDa p	0.985	0.393	0.702	5e-81
356503354	538	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.995	0.386	0.703	1e-77
224147353	548	predicted protein [Populus trichocarpa]	0.846	0.322	0.627	7e-68
356570407	533	PREDICTED: LOW QUALITY PROTEIN: 70 kDa p	0.985	0.386	0.604	1e-65
355329948	573	FK506-binding protein [Nicotiana tabacum	0.995	0.363	0.556	7e-60
224131530	577	predicted protein [Populus trichocarpa]	0.990	0.358	0.559	2e-57
118486491	608	unknown [Populus trichocarpa]	0.990	0.340	0.559	4e-57
255589766	574	peptidylprolyl isomerase, putative [Rici	0.995	0.362	0.537	6e-57
449463204	553	PREDICTED: peptidyl-prolyl cis-trans iso	0.995	0.376	0.542	7e-57

>gi|255570494|ref|XP_002526205.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223534483|gb|EEF36184.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 146/209 (69%), Positives = 173/209 (82%)

Query: 1   MTMKKEEQATVTISAEYLCSHEVSELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
           MTMK+ E   VT++AEYL  H+ S+++ A+SVLHYEV LIDF K+KPFWKMD  EK+EAC
Sbjct: 315 MTMKRGEHCLVTVTAEYLSDHDSSDVLPANSVLHYEVQLIDFIKDKPFWKMDASEKLEAC 374

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
           E KK DGN+LF+AGK+WRASKKYEKA  I+E+ H FTDD+K  A GLRLSCYLNNAACKL
Sbjct: 375 EIKKLDGNVLFKAGKFWRASKKYEKATNIVEYDHPFTDDQKCLAKGLRLSCYLNNAACKL 434

Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
           KL +Y E S LCTKVLE +P NVKAL+RRS+A+LK +ELEKAEADI +AL IDPNNR VK
Sbjct: 435 KLGEYCEASRLCTKVLEQDPFNVKALFRRSEAYLKITELEKAEADINKALIIDPNNRDVK 494

Query: 181 LVYMELKDKQREYAKYQAEIFGTMLSKMG 209
           L Y ELKDKQR YAK+QA++F TM S+MG
Sbjct: 495 LKYKELKDKQRVYAKHQAKLFSTMFSRMG 523

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481570|ref|XP_003632641.1| PREDICTED: LOW QUALITY PROTEIN: 70 kDa peptidyl-prolyl isomerase-like [Vitis vinifera]

 Score =  305 bits (782), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 151/215 (70%), Positives = 178/215 (82%), Gaps = 9/215 (4%)

Query: 1   MTMKKEEQATVTISAEYLCSHEVSELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
           MTM+K EQA VTI A+    HEVS +VSA+S+ HYEV LIDFTKE+PFWKM+ HEK+EAC
Sbjct: 312 MTMRKGEQALVTIQAD---GHEVSGMVSANSLHHYEVELIDFTKERPFWKMENHEKLEAC 368

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEK------AAKIIEFHHSFTDDEKHQANGLRLSCYLN 114
           ERKKHDGN+LF+AGK+W ASKKYEK      A K IEF HSFTD+EK QAN LR+SC LN
Sbjct: 369 ERKKHDGNMLFKAGKFWHASKKYEKEIYLEXAEKYIEFDHSFTDEEKVQANALRISCNLN 428

Query: 115 NAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 174
           NAACKLKL +Y E S  CTKVLEL+P N+KALYRRSQ++L+ SELEKAEADI+RALTIDP
Sbjct: 429 NAACKLKLGEYLEASKQCTKVLELDPSNIKALYRRSQSYLRISELEKAEADIRRALTIDP 488

Query: 175 NNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG 209
           +NR VKLVY EL+ KQ+EY ++Q +IF TMLS+MG
Sbjct: 489 SNRDVKLVYKELQVKQKEYIRHQTQIFSTMLSRMG 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503354|ref|XP_003520475.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 147/209 (70%), Positives = 173/209 (82%), Gaps = 1/209 (0%)

Query: 1   MTMKKEEQATVTISAEYLCSHEVSELVSADS-VLHYEVTLIDFTKEKPFWKMDTHEKIEA 59
           MTMKK EQA VT+ AEYLC +  S+  +A++ VL+YEV L+DF KEKPFWKMDT EKIEA
Sbjct: 329 MTMKKGEQALVTVDAEYLCDYNNSKGNTANNKVLYYEVELVDFVKEKPFWKMDTQEKIEA 388

Query: 60  CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK 119
           CERKKHDGNLLF+   +  ASKKYEKA K IEF HSF++DEK +AN L LSC LNNAACK
Sbjct: 389 CERKKHDGNLLFKVENFRHASKKYEKAVKYIEFDHSFSEDEKCRANTLHLSCNLNNAACK 448

Query: 120 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 179
           LKL +Y E S LCTKVLE +PLN+KALYRR QA+LKTS+LEKAEADIKRAL IDPNNR +
Sbjct: 449 LKLGEYIEASRLCTKVLEQDPLNIKALYRRCQAYLKTSDLEKAEADIKRALIIDPNNRDI 508

Query: 180 KLVYMELKDKQREYAKYQAEIFGTMLSKM 208
           KL Y ELK KQ+EY++++A+IF TMLS+M
Sbjct: 509 KLEYKELKLKQKEYSRHEADIFSTMLSRM 537

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224147353|ref|XP_002336458.1| predicted protein [Populus trichocarpa] gi|222835069|gb|EEE73518.1| predicted protein [Populus trichocarpa]

 Score =  262 bits (669), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 133/212 (62%), Positives = 153/212 (72%), Gaps = 35/212 (16%)

Query: 1   MTMKKEEQATVTISAEYLCSHEVSELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
           MTMKK E ATVT+ A+YL  H++S ++ A+S+LHYEV L+DF KEKPFWKMDTHEK+EA 
Sbjct: 327 MTMKKGEHATVTVDAKYLHGHDISGMLPANSMLHYEVELLDFIKEKPFWKMDTHEKLEAS 386

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEK----------------------------------- 85
           ERKK DGN+LF+AGK+WRASKKYEK                                   
Sbjct: 387 ERKKLDGNVLFKAGKFWRASKKYEKASPKAMKLRKIHHPFKILLSFSAFKLQNFLNYKFQ 446

Query: 86  AAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA 145
           AAK IEF HSFTD+E   A  LRLSCYLNNAACKLK  ++ E S LCTKVLEL+PLNVKA
Sbjct: 447 AAKYIEFDHSFTDEEMCLAKSLRLSCYLNNAACKLKSGEFLEASRLCTKVLELDPLNVKA 506

Query: 146 LYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177
           L+RRSQA+LKTSELEKAEADIK+AL IDPNNR
Sbjct: 507 LFRRSQAYLKTSELEKAEADIKKALAIDPNNR 538

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570407|ref|XP_003553380.1| PREDICTED: LOW QUALITY PROTEIN: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 136/225 (60%), Positives = 161/225 (71%), Gaps = 19/225 (8%)

Query: 1   MTMKKEEQATVTISAEYLCSHEVS-ELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEA 59
           MT KK EQA VT+ AEYL  +  S E  + + VL+YEV L+DF KE+PFWKMDT EKIE 
Sbjct: 310 MTTKKGEQALVTVDAEYLSDYNNSRETQTNNKVLYYEVELVDFVKEEPFWKMDTQEKIEV 369

Query: 60  CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK 119
           CERKKHDGNLLF+   + RASKKYEKA K IEF HSF++DEKH+ N LRLSC LNNAA K
Sbjct: 370 CERKKHDGNLLFKVENFRRASKKYEKAVKYIEFDHSFSEDEKHRDNTLRLSCNLNNAAGK 429

Query: 120 LKLEDYSETSSLCTKVL----------------ELEPLNVKALYRRSQAHLKTSELEKAE 163
           LKL +Y E  +LCTK L                 ++P  +KALYRR QA+LKTS+L KAE
Sbjct: 430 LKLGEYIE--ALCTKPLRVVYDLQHTLDEITYMSVKPFTIKALYRRCQAYLKTSDLVKAE 487

Query: 164 ADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208
            DIKRAL IDPNNR +KL   ELK KQ+EY +++A IF TMLS+M
Sbjct: 488 TDIKRALIIDPNNRDIKLECKELKCKQKEYNRHEANIFSTMLSRM 532

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355329948|dbj|BAL14273.1| FK506-binding protein [Nicotiana tabacum]

 Score =  235 bits (600), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 118/212 (55%), Positives = 154/212 (72%), Gaps = 4/212 (1%)

Query: 1   MTMKKEEQATVTISAEYLCSHEVSE----LVSADSVLHYEVTLIDFTKEKPFWKMDTHEK 56
           MTMKK E A +TI+ EY      S+    ++  +S +HYEV L+ F K+K  W M+T EK
Sbjct: 337 MTMKKGEVALLTIAPEYAFGSSESKQDLAVIPPNSTVHYEVELVSFVKDKESWDMNTPEK 396

Query: 57  IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA 116
           IEA  +KK +GN LF+AGKY RASK+YEKAAK IE+  SF+++EK Q+  L++SC LNNA
Sbjct: 397 IEAAGKKKEEGNALFKAGKYTRASKRYEKAAKFIEYDTSFSEEEKKQSKALKISCNLNNA 456

Query: 117 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           ACKLKL+DY +   LCTKVLELE  NVKALYRR+QA++  ++L+ AE DIK+AL IDPNN
Sbjct: 457 ACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMNMADLDLAEFDIKKALEIDPNN 516

Query: 177 RVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208
           R VKL Y  LKDK +E+ K  A+ +G M +K+
Sbjct: 517 RDVKLEYKALKDKVKEFNKKDAKFYGNMFAKL 548

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131530|ref|XP_002321107.1| predicted protein [Populus trichocarpa] gi|222861880|gb|EEE99422.1| predicted protein [Populus trichocarpa]

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/211 (55%), Positives = 150/211 (71%), Gaps = 4/211 (1%)

Query: 2   TMKKEEQATVTISAEYLCSHEVSE----LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKI 57
           TMKK E A VTI  EY      S+     V  ++ ++YEV +I FTKEK  W M+T EKI
Sbjct: 342 TMKKGEVALVTIQPEYAFGRSESQQDLATVPVNATVYYEVEMISFTKEKESWDMNTQEKI 401

Query: 58  EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAA 117
           EA  +KK +GN  F+AGKY RAS++YEKAAK IE+  SFTD+EK Q+  L++SC LNNAA
Sbjct: 402 EAAGKKKEEGNAWFKAGKYERASRRYEKAAKFIEYDSSFTDEEKQQSKVLKISCKLNNAA 461

Query: 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177
           CKLKL+DY E   LC+KVLEL+  NVKALYRR+QA+++  +L+ AE DIKRAL IDP+NR
Sbjct: 462 CKLKLKDYKEAEKLCSKVLELDGKNVKALYRRAQAYIQLVDLDLAEIDIKRALEIDPDNR 521

Query: 178 VVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208
            VKL    LKDK REY K +A+ +  + +KM
Sbjct: 522 DVKLENKILKDKVREYNKKEAQFYSNIFAKM 552

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486491|gb|ABK95085.1| unknown [Populus trichocarpa]

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 118/211 (55%), Positives = 150/211 (71%), Gaps = 4/211 (1%)

Query: 2   TMKKEEQATVTISAEYLCSHEVSE----LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKI 57
           TMKK E A VTI  EY      S+     V  ++ ++YEV +I FTKEK  W M+T EKI
Sbjct: 342 TMKKGEVALVTIQPEYAFGRSESQQDLATVPVNATVYYEVEMISFTKEKESWDMNTQEKI 401

Query: 58  EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAA 117
           EA  +KK +GN  F+AGKY RAS++YEKAAK IE+  SFTD+EK Q+  L++SC LNNAA
Sbjct: 402 EAAGKKKEEGNAWFKAGKYERASRRYEKAAKFIEYDSSFTDEEKQQSKVLKISCKLNNAA 461

Query: 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177
           CKLKL+DY E   LC+KVLEL+  NVKALYRR+QA+++  +L+ AE DIKRAL IDP+NR
Sbjct: 462 CKLKLKDYKEAEKLCSKVLELDGQNVKALYRRAQAYIQLVDLDLAEIDIKRALEIDPDNR 521

Query: 178 VVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208
            VKL    LKDK REY K +A+ +  + +KM
Sbjct: 522 DVKLENKILKDKVREYNKKEAQFYSNIFAKM 552

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255589766|ref|XP_002535081.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223524081|gb|EEF27302.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 154/212 (72%), Gaps = 4/212 (1%)

Query: 1   MTMKKEEQATVTISAEYLCSHEVSE----LVSADSVLHYEVTLIDFTKEKPFWKMDTHEK 56
           + MKK E A VTI+ EY      S+    ++  +S ++YEV L+ F KEK  W M+T EK
Sbjct: 338 LAMKKGEVALVTIAPEYAFGASESKQELAVIPPNSTVYYEVELVSFVKEKESWDMNTQEK 397

Query: 57  IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA 116
           IEA  +KK +GN+LF+AGKY RASK+YEKA K IE+  SF+++EK QA  L+++C LNNA
Sbjct: 398 IEAAGKKKEEGNILFKAGKYARASKRYEKAVKHIEYDSSFSEEEKKQAKALKVACNLNNA 457

Query: 117 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           ACKL+L++Y E   LCTKVL+LE  NVKALYRR+QA+++ ++L+ AE DIK+AL I+P+N
Sbjct: 458 ACKLRLKEYKEAEKLCTKVLDLESRNVKALYRRAQAYIQLADLDLAEFDIKKALEIEPDN 517

Query: 177 RVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208
           R VKL Y  LKDK RE  K +A+ +G M +KM
Sbjct: 518 RDVKLEYRTLKDKMRELNKKEAKFYGNMFAKM 549

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463204|ref|XP_004149324.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Cucumis sativus] gi|449515125|ref|XP_004164600.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Cucumis sativus]

 Score =  225 bits (574), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 115/212 (54%), Positives = 154/212 (72%), Gaps = 4/212 (1%)

Query: 1   MTMKKEEQATVTISAEYLCSHEVSE----LVSADSVLHYEVTLIDFTKEKPFWKMDTHEK 56
           +TMKK E A +TI+ EY      S+    +V  +S ++YEV L+ F KEK  W M+  EK
Sbjct: 336 VTMKKGEIALLTIAPEYAFGSSESQQDLAVVPPNSTVYYEVELVAFDKEKESWDMNNQEK 395

Query: 57  IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA 116
           IEA  +KK +GN+LF++GK+ RASK+YEKA K IE+  SF+++EK QA  L+++C LNNA
Sbjct: 396 IEAAGKKKEEGNVLFKSGKFARASKRYEKAVKFIEYDSSFSEEEKKQAKALKVACNLNNA 455

Query: 117 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           ACKLKL+ Y+E   LCTKVLELE  NVKALYRR+QA+++ ++L+ AE DIK+AL IDPNN
Sbjct: 456 ACKLKLKLYNEAEKLCTKVLELESSNVKALYRRAQAYIQLADLDLAEFDIKKALDIDPNN 515

Query: 177 RVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208
           R VKL Y  LK+K +EY K  A+ +G M +KM
Sbjct: 516 RDVKLEYKTLKEKVKEYNKKDAKFYGNMFAKM 547

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.995	0.358	0.523	1.6e-55
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.995	0.359	0.514	2e-55
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.990	0.353	0.542	3.4e-54
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.995	0.370	0.523	1.5e-53
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.995	0.304	0.488	9.9e-52
TAIR|locus:2037650	164	TPR6 "AT1G58450" [Arabidopsis	0.751	0.957	0.481	9.5e-34
UNIPROTKB|A8J0I6	569	FKB62 "Peptidyl-prolyl cis-tra	0.985	0.362	0.381	4.6e-32
UNIPROTKB|F1NIM4	442	FKBP4 "Uncharacterized protein	0.985	0.466	0.331	2.7e-29
UNIPROTKB|F1NP08	464	FKBP4 "Uncharacterized protein	0.985	0.443	0.331	2.7e-29
UNIPROTKB|Q95L05	457	FKBP5 "Peptidyl-prolyl cis-tra	0.980	0.448	0.323	8.6e-28

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 549 (198.3 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 111/212 (52%), Positives = 146/212 (68%)

Query:     1 MTMKKEEQATVTISAEYLCSHEVSE----LVSADSVLHYEVTLIDFTKEKPFWKMDTHEK 56
             + MK  E A VTI  EY      S+    +V  +S + YEV L+ F K+K  W ++  EK
Sbjct:   343 LNMKNGEVALVTIPPEYAFGSTESKQDLAVVPPNSTVIYEVELVSFVKDKESWDLNNTEK 402

Query:    57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA 116
             IE    KK +GN LF+ GKY RASK+YEKAAK IE+  SF++DEK Q+  L+++C LNNA
Sbjct:   403 IETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQLKVTCNLNNA 462

Query:   117 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
             ACKLKL+DY +   LCTKVLEL+  NVKALYRR+QA+++ ++LE AE DIK+AL IDP+N
Sbjct:   463 ACKLKLKDYKQAEKLCTKVLELDSQNVKALYRRAQAYMQLADLELAEVDIKKALEIDPDN 522

Query:   177 RVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208
             R VKL Y  LK+K +EY K  A+ +  M +KM
Sbjct:   523 RDVKLTYKNLKEKVKEYNKKDAKFYSNMFAKM 554

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
 Identities = 109/212 (51%), Positives = 153/212 (72%)

Query:     1 MTMKKEEQATVTISAEYL--CSHEVSEL--VSADSVLHYEVTLIDFTKEKPFWKMDTHEK 56
             M MKK E A +TIS EY    S    EL  +  +S ++YEV L+ F KEK  W M+T E+
Sbjct:   347 MGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSFIKEKESWDMNTQER 406

Query:    57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA 116
             IEA  +KK +GN+LF+AGKY RASK+YE+  K IE+  +F ++EK ++  L+++C LN+A
Sbjct:   407 IEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLNDA 466

Query:   117 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
             ACKLKL+DY E + L TKVLE++  NVKA+YRR+ A+L+T++L+ AE DIK+AL IDP+N
Sbjct:   467 ACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDN 526

Query:   177 RVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208
             + VK+ Y +LK+K +EY K  A+ +  MLSKM
Sbjct:   527 KEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKM 558

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 115/212 (54%), Positives = 152/212 (71%)

Query:     1 MTMKKEEQATVTISAEYLC-SHEVSE---LVSADSVLHYEVTLIDFTKEKPFWKM-DTHE 55
             +TMKK E A V +  ++   S E  +   +V A+S + YEV L+ F KEK  W + D  E
Sbjct:   347 VTMKKGEVALVRLPPQHAFGSTETKQDLAVVPANSTVWYEVELVSFEKEKESWDLKDNAE 406

Query:    56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNN 115
             KIEA  +KK +GN+ F+ GKY +ASK+YEKAAK IE+  SFTDDEK Q+  L++SC LNN
Sbjct:   407 KIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKALKVSCKLNN 466

Query:   116 AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175
             AACKLKL++Y E   LCTKVLELE  NVKALYRR+QA+++ ++LE AE D+K+AL IDP+
Sbjct:   467 AACKLKLKEYREAEKLCTKVLELESTNVKALYRRTQAYIELADLELAELDVKKALEIDPD 526

Query:   176 NRVVKLVYMELKDKQREYAKYQAEIFGTMLSK 207
             NR VK+VY  LK+K +EY K  A+ +G M +K
Sbjct:   527 NRDVKMVYKTLKEKIKEYNKRDAKFYGNMFAK 558

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 111/212 (52%), Positives = 148/212 (69%)

Query:     1 MTMKKEEQATVTISAEYLCSHEVSE----LVSADSVLHYEVTLIDFTKEKPFWKMDTHEK 56
             M MKK E A VTI  EY      S+    +V  +S + YEV L+ F KE+  W M+T EK
Sbjct:   337 MKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEK 396

Query:    57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA 116
             IEA  +KK +GN  F+ GKY  ASK+YEKA K IE+  SF+++EK QA  L+++C LN+A
Sbjct:   397 IEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDA 456

Query:   117 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
             ACKLKL+DY +   LCTKVLELE  NVKALYRR+QA+++ S+L+ AE D+K+AL IDPNN
Sbjct:   457 ACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNN 516

Query:   177 RVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208
             R VKL    LK+K +E+ K +A+ +G M +K+
Sbjct:   517 REVKLEQKRLKEKMKEFNKKEAKFYGNMFAKL 548

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 508 (183.9 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
 Identities = 104/213 (48%), Positives = 145/213 (68%)

Query:     1 MTMKKEEQATVTISAEYLC-SHEVSE---LVSADSVLHYEVTLIDFTKEKPFWKM-DTHE 55
             ++MKK E A VTI  EY   S E  +   +V  +S ++YEV L+ F KEK  W M +  E
Sbjct:   392 LSMKKGEVALVTIPPEYAFGSDETRQDLSVVPPNSTVYYEVELVSFDKEKESWDMKENTE 451

Query:    56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNN 115
             KIEA  +KK +GN  F+  KY RASK+Y KA   I++  SF+++EK  +  L++SC LNN
Sbjct:   452 KIEAAAKKKDEGNAWFKMEKYARASKRYGKALNFIQYDSSFSEEEKQLSKPLKVSCKLNN 511

Query:   116 AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175
             AACKLKL+DY E   LCT+VLEL+ +NVKA YRR+QAH+   + + AE DIK+AL IDP+
Sbjct:   512 AACKLKLKDYKEAKELCTEVLELDSMNVKAFYRRAQAHMYLVDFDLAELDIKKALEIDPD 571

Query:   176 NRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208
             NR VK+ Y  LK+K +E  + + +++G M+SK+
Sbjct:   572 NRDVKMGYRRLKEKVKEQKRKETKLYGNMISKL 604

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2037650 TPR6 "AT1G58450" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 77/160 (48%), Positives = 109/160 (68%)

Query:    51 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 110
             M+  EKIEA  RKK +GNLL++  KY RA+KKY KAA+ IE +  F   ++ Q   LR+S
Sbjct:     1 MNNGEKIEAANRKKEEGNLLYKTQKYERAAKKYNKAAECIE-NGKFEGGDEKQVKALRVS 59

Query:   111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 170
             C+LN AAC LKL+++ ET  LC++VL++E  NVKALYRR+Q++++  +L  AE DI RAL
Sbjct:    60 CFLNGAACSLKLKNFLETIVLCSEVLDIEFQNVKALYRRAQSYIEVGDLISAEMDINRAL 119

Query:   171 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM--LSKM 208
               DP NR VK +Y  +K  + E  +  A+++  M  LSK+
Sbjct:   120 EADPENREVKSLYKAMKLSKAESDRRDAKLYANMFALSKV 159

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

UNIPROTKB|A8J0I6 FKB62 "Peptidyl-prolyl cis-trans isomerase, FKBP-type" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 355 (130.0 bits), Expect = 4.6e-32, P = 4.6e-32
 Identities = 82/215 (38%), Positives = 124/215 (57%)

Query:     1 MTMKKEEQATVTIS-AEY-------LCSHEVSEL-VSADSVLHYEVTLIDFTKEKPFWKM 51
             M MKK E A VT++   Y         S E SE+ V A S L +EV L+DFT  K  W+M
Sbjct:   310 MKMKKGETAVVTVNDPAYGYGDKPRTVSVEGSEVEVPAGSRLQFEVDLVDFTNAKETWEM 369

Query:    52 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSC 111
                EK  A +++K  GN  F++GK  RA   +++A   + +  SF D+ K     ++ SC
Sbjct:   370 SDIEKAHAAKQRKDKGNAFFKSGKLARAQSCWDRAVAAVSYDKSFPDEAKAIGKEVKRSC 429

Query:   112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
             +LN AA  LK   + +    CT VL+++P +VKALYRR+QAH+  ++  +AE D+KRAL 
Sbjct:   430 WLNLAALDLKRAHWKDAVKHCTSVLDIDPTSVKALYRRAQAHMGMADFFEAEQDVKRALE 489

Query:   172 IDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 206
             ++P++  V  +   LK  QRE  K +A+++  M +
Sbjct:   490 LEPDSADVLALQRRLKAAQREQNKKEAKLYSKMFA 524

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|F1NIM4 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 69/208 (33%), Positives = 112/208 (53%)

Query:     3 MKKEEQATVTISAEYLCSHEVSEL--VSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
             M+K E++   +   Y       E   +  D+ L YEV L  F K K  W+M+T EK+E  
Sbjct:   204 MEKSEESIFYLKPNYGFGSTGKEKFQIPPDAELQYEVKLKSFEKAKESWEMNTEEKLEQS 263

Query:    61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
                K  G   F+ GKY RA+ +Y+K    +E     +D+E  +A  LRL+ +LN A C L
Sbjct:   264 CMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAHLNLAMCHL 323

Query:   121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
             KL++YS+    C K LEL+  N K L+RR +AHL  ++ E A  D ++ + + P+N+  K
Sbjct:   324 KLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELARGDFQKVIQLYPSNKAAK 383

Query:   181 LVYMELKDKQREYAKYQAEIFGTMLSKM 208
             +  +  + K RE  + + +++  M  ++
Sbjct:   384 VQLVTCQQKIREQHEKEKKMYANMFQRL 411

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1NP08 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 69/208 (33%), Positives = 112/208 (53%)

Query:     3 MKKEEQATVTISAEYLCSHEVSEL--VSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
             M+K E++   +   Y       E   +  D+ L YEV L  F K K  W+M+T EK+E  
Sbjct:   204 MEKSEESIFYLKPNYGFGSTGKEKFQIPPDAELQYEVKLKSFEKAKESWEMNTEEKLEQS 263

Query:    61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
                K  G   F+ GKY RA+ +Y+K    +E     +D+E  +A  LRL+ +LN A C L
Sbjct:   264 CMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAHLNLAMCHL 323

Query:   121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
             KL++YS+    C K LEL+  N K L+RR +AHL  ++ E A  D ++ + + P+N+  K
Sbjct:   324 KLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELARGDFQKVIQLYPSNKAAK 383

Query:   181 LVYMELKDKQREYAKYQAEIFGTMLSKM 208
             +  +  + K RE  + + +++  M  ++
Sbjct:   384 VQLVTCQQKIREQHEKEKKMYANMFQRL 411

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

UNIPROTKB|Q95L05 FKBP5 "Peptidyl-prolyl cis-trans isomerase FKBP5" [Chlorocebus aethiops (taxid:9534)]

 Score = 311 (114.5 bits), Expect = 8.6e-28, P = 8.6e-28
 Identities = 67/207 (32%), Positives = 104/207 (50%)

Query:     3 MKKEEQATVTISAEYLCSHEVSEL--VSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
             M++EEQ  + +   Y           +  ++ L YEVTL  F K K  W+MDT EK+E  
Sbjct:   209 MQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQA 268

Query:    61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
                K  G + F+ GKY RA  +Y K    +E  +  ++ E   +    L+ +LN A C L
Sbjct:   269 AIVKEKGTVYFKGGKYMRAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328

Query:   121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
             KL +Y++    C K L L+  N K LYRR +A L  +E E A+ D ++ L ++P N+  +
Sbjct:   329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388

Query:   181 LVYMELKDKQREYAKYQAEIFGTMLSK 207
             L     + K +E+ +    I+  M  K
Sbjct:   389 LQISMCQKKAKEHNERDRRIYANMFKK 415

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.40480001	hypothetical protein (548 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0051013901	hypothetical protein (181 aa)			•						0.446

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-10
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	7e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	7e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.001
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	0.002
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.002
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 15/109 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           GNL ++ G Y  A + YEKA ++   +                  Y N AA   KL  Y 
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELDPDNAD---------------AYYNLAAAYYKLGKYE 51

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175
           E      K LEL+P N KA Y    A+ K  + E+A    ++AL +DPN
Sbjct: 52  EALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 27/88 (30%), Positives = 38/88 (43%)

Query: 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 170
             LN      KL DY E      K LEL+P N  A Y  + A+ K  + E+A  D ++AL
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 171 TIDPNNRVVKLVYMELKDKQREYAKYQA 198
            +DP+N            K  +Y +   
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALE 89

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 42.3 bits (100), Expect = 7e-06
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSE-LEKAEADIKRA 169
              N      KL DY E      K LEL+P N +A Y  + A+LK  +  E+A  D+++A
Sbjct: 5   ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64

Query: 170 LTIDP 174
           L +DP
Sbjct: 65  LELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 133 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM--ELKDKQ 190
            K+L L+P +  AL   + A+       KA   +KRAL + P+N   ++      L  K+
Sbjct: 625 KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR 684

Query: 191 REYAKYQAEIF 201
            E AK  A+  
Sbjct: 685 TESAKKIAKSL 695

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 18/57 (31%), Positives = 28/57 (49%)

Query: 120 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           L+  DY E  +     L   PL  +AL    +A L+   L +A A ++ AL  DP++
Sbjct: 8   LRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 35.1 bits (82), Expect = 0.001
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
            KALY    A+LK  + ++A    ++AL ++PNN
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 123 EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 174
           +D++    L T+ ++L+P N +    R+QA++K     +A AD  +A+ +DP
Sbjct: 16  DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP 67

Length = 356

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 10/113 (8%)

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
           ERKK+   L  +  K +R +K + KA K+         D  +         Y N AAC  
Sbjct: 122 ERKKYAAKLKEKGNKAYR-NKDFNKAIKLYSKAIECKPDPVY---------YSNRAACHN 171

Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 173
            L D+ +     T  LEL+P   KAL RR+ A+    +   A  D+  +  ID
Sbjct: 172 ALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIID 224

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 33.6 bits (78), Expect = 0.004
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
            +ALY    A+LK  + ++A    ++AL +DPNN
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.91
KOG0553	304	consensus TPR repeat-containing protein [General f	99.89
KOG4234	271	consensus TPR repeat-containing protein [General f	99.85
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.74
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.74
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.7
PRK15359	144	type III secretion system chaperone protein SscB;	99.7
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.68
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.67
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.66
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.65
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.63
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.61
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.6
PRK11189	296	lipoprotein NlpI; Provisional	99.51
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.5
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.47
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.47
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.47
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.46
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.46
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.42
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.4
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.38
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.38
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.36
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.34
KOG1126	638	consensus DNA-binding cell division cycle control	99.33
PRK15359	144	type III secretion system chaperone protein SscB;	99.33
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.33
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.32
PRK15331	165	chaperone protein SicA; Provisional	99.32
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.31
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.3
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.3
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.29
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.28
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.28
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	99.28
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.27
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.26
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.25
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.25
PRK12370	553	invasion protein regulator; Provisional	99.24
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.24
PRK10803	263	tol-pal system protein YbgF; Provisional	99.24
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.24
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.23
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.22
PRK12370	553	invasion protein regulator; Provisional	99.22
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.21
KOG1126	638	consensus DNA-binding cell division cycle control	99.21
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.21
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.2
PRK11189	296	lipoprotein NlpI; Provisional	99.2
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.19
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.17
PF13371	73	TPR_9: Tetratricopeptide repeat	99.17
KOG1125	579	consensus TPR repeat-containing protein [General f	99.16
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.16
KOG4555	175	consensus TPR repeat-containing protein [Function	99.15
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.14
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.14
PF13512	142	TPR_18: Tetratricopeptide repeat	99.13
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.13
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.12
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.12
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.12
KOG2076	895	consensus RNA polymerase III transcription factor	99.11
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.11
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.1
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.09
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.09
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.08
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.06
KOG0553	304	consensus TPR repeat-containing protein [General f	99.05
PLN02789	320	farnesyltranstransferase	99.05
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.04
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.01
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.99
PLN02789	320	farnesyltranstransferase	98.98
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.97
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.96
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.96
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.95
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.92
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.9
KOG2003	840	consensus TPR repeat-containing protein [General f	98.89
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.89
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.88
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.88
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.87
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.87
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.85
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.84
PF12688	120	TPR_5: Tetratrico peptide repeat	98.84
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.83
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.83
PRK14574	822	hmsH outer membrane protein; Provisional	98.82
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.81
PF13371	73	TPR_9: Tetratricopeptide repeat	98.81
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.8
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.8
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.77
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.76
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.75
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.75
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.75
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.73
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.72
KOG1129	478	consensus TPR repeat-containing protein [General f	98.71
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.71
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.7
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.69
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.67
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.66
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.65
KOG2076	895	consensus RNA polymerase III transcription factor	98.61
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.6
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.6
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.58
KOG1129	478	consensus TPR repeat-containing protein [General f	98.58
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.57
PRK14574	822	hmsH outer membrane protein; Provisional	98.57
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.56
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.56
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.55
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.55
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.54
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.54
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.53
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.53
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.53
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.52
KOG4234	271	consensus TPR repeat-containing protein [General f	98.48
KOG1125	579	consensus TPR repeat-containing protein [General f	98.47
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.44
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.44
KOG2003	840	consensus TPR repeat-containing protein [General f	98.44
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.42
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.41
PRK10803	263	tol-pal system protein YbgF; Provisional	98.41
KOG1310	758	consensus WD40 repeat protein [General function pr	98.4
PF13428	44	TPR_14: Tetratricopeptide repeat	98.4
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.39
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.38
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.37
PF12688	120	TPR_5: Tetratrico peptide repeat	98.34
PF13431	34	TPR_17: Tetratricopeptide repeat	98.33
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.32
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.31
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.31
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.31
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.28
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.27
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.26
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.25
PF13428	44	TPR_14: Tetratricopeptide repeat	98.25
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.21
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.21
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	98.2
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.2
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.19
PRK11906	458	transcriptional regulator; Provisional	98.18
PRK15331	165	chaperone protein SicA; Provisional	98.18
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.17
PRK10941	269	hypothetical protein; Provisional	98.15
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.13
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	98.13
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	98.13
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.1
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.09
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.07
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.07
PRK11906	458	transcriptional regulator; Provisional	98.06
PF13512	142	TPR_18: Tetratricopeptide repeat	98.06
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.03
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.98
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.97
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.93
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.93
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.92
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.92
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	97.92
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.89
KOG4555	175	consensus TPR repeat-containing protein [Function	97.86
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.83
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.81
KOG1586	288	consensus Protein required for fusion of vesicles	97.77
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.76
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.73
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.7
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.67
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.66
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.63
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.63
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.61
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.56
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.55
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.49
PF13431	34	TPR_17: Tetratricopeptide repeat	97.47
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.46
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.46
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.43
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.4
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.37
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.37
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.37
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.36
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.36
KOG3364	149	consensus Membrane protein involved in organellar	97.33
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.32
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.27
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.27
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.27
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.25
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.23
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.23
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.21
PLN03077	857	Protein ECB2; Provisional	97.17
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.16
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.15
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.15
PLN03218	1060	maturation of RBCL 1; Provisional	97.13
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.13
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.11
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.09
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.08
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.07
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.07
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.06
PLN03218	1060	maturation of RBCL 1; Provisional	97.05
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	97.01
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.99
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.96
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.96
COG2912	269	Uncharacterized conserved protein [Function unknow	96.95
PRK04841	903	transcriptional regulator MalT; Provisional	96.95
PLN03077	857	Protein ECB2; Provisional	96.94
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	96.94
KOG1585	308	consensus Protein required for fusion of vesicles	96.93
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.85
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.84
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.82
PRK04841	903	transcriptional regulator MalT; Provisional	96.81
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.76
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.73
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.65
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.63
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.6
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.58
KOG2471	696	consensus TPR repeat-containing protein [General f	96.55
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.52
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.5
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.47
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.46
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.45
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.34
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.33
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.32
PRK10941	269	hypothetical protein; Provisional	96.25
COG3947	361	Response regulator containing CheY-like receiver a	96.22
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.22
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.14
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	96.1
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.08
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.03
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.03
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.94
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.87
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.83
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.79
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.78
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.74
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.72
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.69
KOG1585	308	consensus Protein required for fusion of vesicles	95.66
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.57
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.57
KOG2300	629	consensus Uncharacterized conserved protein [Funct	95.48
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.47
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.45
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.31
KOG2471	696	consensus TPR repeat-containing protein [General f	95.17
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.08
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.7
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.51
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.5
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.45
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	94.44
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.44
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.35
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.35
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.33
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.28
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.11
KOG1586	288	consensus Protein required for fusion of vesicles	94.1
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	94.02
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	93.95
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	93.92
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.91
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.81
KOG3364	149	consensus Membrane protein involved in organellar	93.78
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.72
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	93.68
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.61
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	93.48
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	93.45
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	93.37
PF04212	69	MIT: MIT (microtubule interacting and transport) d	93.18
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	93.17
KOG2300	629	consensus Uncharacterized conserved protein [Funct	93.05
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.04
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	92.87
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	92.76
COG2912	269	Uncharacterized conserved protein [Function unknow	92.65
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.99
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.86
COG3118	304	Thioredoxin domain-containing protein [Posttransla	91.75
KOG1550	552	consensus Extracellular protein SEL-1 and related	91.71
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	91.7
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	91.63
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	91.52
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	91.42
PHA02537	230	M terminase endonuclease subunit; Provisional	91.42
KOG2047	835	consensus mRNA splicing factor [RNA processing and	91.18
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	91.13
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	90.98
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	90.85
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	90.71
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.62
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	90.56
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.42
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	90.17
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	90.14
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.93
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.73
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	89.54
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	89.48
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	89.3
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	89.23
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.03
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.96
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	88.95
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	88.93
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	88.68
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	88.57
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	88.52
KOG1310	758	consensus WD40 repeat protein [General function pr	88.31
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.02
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	87.82
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.78
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	87.62
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	87.35
KOG0529	421	consensus Protein geranylgeranyltransferase type I	86.81
cd02656	75	MIT MIT: domain contained within Microtubule Inter	86.69
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	86.64
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	85.6
KOG1550	552	consensus Extracellular protein SEL-1 and related	85.51
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	85.44
COG4455	273	ImpE Protein of avirulence locus involved in tempe	85.26
KOG2047	835	consensus mRNA splicing factor [RNA processing and	85.2
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	83.83
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	83.78
KOG2041	1189	consensus WD40 repeat protein [General function pr	83.4
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	83.34
COG3947	361	Response regulator containing CheY-like receiver a	83.31
PF12854	34	PPR_1: PPR repeat	83.24
COG3898	531	Uncharacterized membrane-bound protein [Function u	83.08
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	82.71
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	82.59
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	82.21
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	81.79
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	81.42
KOG0529	421	consensus Protein geranylgeranyltransferase type I	80.93
KOG3783	546	consensus Uncharacterized conserved protein [Funct	80.47
PF15469	182	Sec5: Exocyst complex component Sec5	80.26

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-41  Score=269.37  Aligned_cols=208  Identities=43%  Similarity=0.732  Sum_probs=201.8

Q ss_pred             CCCCccEEEEEeCccc-cc-ccCCcCCCCCCceEEEEEEEcccc-cCCCCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHH
Q 028390            2 TMKKEEQATVTISAEY-LC-SHEVSELVSADSVLHYEVTLIDFT-KEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWR   78 (209)
Q Consensus         2 ~m~~ge~~~~~~~~~~-~~-~~~~~~~ip~~~~l~~~~~l~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~   78 (209)
                      .|++||+|.|+|+|+| || ..++++.||||+++.|+|+|+.+. +....|.+...+++..+...++.|+.+|+.|+|..
T Consensus       147 ~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~  226 (397)
T KOG0543|consen  147 MMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFKEGKFKL  226 (397)
T ss_pred             hcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHhhchHHH
Confidence            6999999999999999 99 445899999999999999999999 88889999988999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCC
Q 028390           79 ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSE  158 (209)
Q Consensus        79 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~  158 (209)
                      |...|.+|+.+++.+..+++++......+...+++|+|.|+++++.|..|+..|+++|.++|+|++++||+|.|+..+|+
T Consensus       227 A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e  306 (397)
T KOG0543|consen  227 AKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGE  306 (397)
T ss_pred             HHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 028390          159 LEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG  209 (209)
Q Consensus       159 ~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  209 (209)
                      ++.|..+|+++++++|+|..+...+..|.++++++..++++.|++||+.++
T Consensus       307 ~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  307 YDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999999999999999999999998764

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=9.1e-23  Score=152.83  Aligned_cols=177  Identities=28%  Similarity=0.423  Sum_probs=163.4

Q ss_pred             ceEEEEEEEcccc----cCCCCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc---CCCChHHHHH
Q 028390           31 SVLHYEVTLIDFT----KEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH---HSFTDDEKHQ  103 (209)
Q Consensus        31 ~~l~~~~~l~~~~----~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~---~~~~~~~~~~  103 (209)
                      .+|.|.++|..+.    ...+.|.++.+++.+....+..+||.+|+.|+|.+|...|..||..+.+-   ...++.+|.+
T Consensus       145 qpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~e  224 (329)
T KOG0545|consen  145 QPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLE  224 (329)
T ss_pred             CceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHH
Confidence            5799999999887    35778999999999999999999999999999999999999999776542   2234588999


Q ss_pred             HHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-HHHHHH
Q 028390          104 ANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-RVVKLV  182 (209)
Q Consensus       104 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~  182 (209)
                      ++.....++.|.++|++..|+|-++++.|+.++..+|.|.+|||++|.+.....+.++|..+|.++++++|.- +.+.+.
T Consensus       225 Ldk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrE  304 (329)
T KOG0545|consen  225 LDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRE  304 (329)
T ss_pred             HHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999985 678889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhc
Q 028390          183 YMELKDKQREYAKYQAEIFGTMLSK  207 (209)
Q Consensus       183 l~~l~~~~~~~~~~~~~~~~~~~~~  207 (209)
                      +..+..++.+.+..++-.|++||+.
T Consensus       305 lr~le~r~~ek~~edr~~~~kmfs~  329 (329)
T KOG0545|consen  305 LRLLENRMAEKQEEDRLRCRKMFSQ  329 (329)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhcCC
Confidence            9999999999999999999999974

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=1.5e-22  Score=155.86  Aligned_cols=125  Identities=30%  Similarity=0.359  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390           55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK  134 (209)
Q Consensus        55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  134 (209)
                      +....|+.++.+|+.+++.++|.+|+..|++||.+.|.++.               +|.|+|.+|.++|+|+.|+++|..
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV---------------yycNRAAAy~~Lg~~~~AVkDce~  140 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV---------------YYCNRAAAYSKLGEYEDAVKDCES  140 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch---------------HHHHHHHHHHHhcchHHHHHHHHH
Confidence            67788999999999999999999999999999999988765               699999999999999999999999


Q ss_pred             HhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390          135 VLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  194 (209)
Q Consensus       135 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~  194 (209)
                      +|.+||.++++|.|+|.+|+.+|++.+|+..|+++++++|+|+..+..|..++..+.+..
T Consensus       141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999888776544

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=4e-20  Score=134.96  Aligned_cols=134  Identities=33%  Similarity=0.422  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      .+..+..++..|+.+|..|+|.+|...|..||.+.|..+.          ..+..+|.|+|.|.++++.|+.|+..|.++
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----------e~rsIly~Nraaa~iKl~k~e~aI~dcsKa  160 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----------EERSILYSNRAAALIKLRKWESAIEDCSKA  160 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----------HHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence            3667889999999999999999999999999999887664          567889999999999999999999999999


Q ss_pred             hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028390          136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAE  199 (209)
Q Consensus       136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  199 (209)
                      |+++|.+.+++.|+|.+|.++..+++|+.+|+++++++|....+...+.++-..+....++.+.
T Consensus       161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe  224 (271)
T KOG4234|consen  161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE  224 (271)
T ss_pred             HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988887776664

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=2.2e-17  Score=135.59  Aligned_cols=118  Identities=34%  Similarity=0.433  Sum_probs=111.7

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+...+..|+.+|+.|+|..|+.+|++||...|+++.               +|.|+|.||.+++.+..|+.+|..+++
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~---------------lYsNRAac~~kL~~~~~aL~Da~~~ie  420 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR---------------LYSNRAACYLKLGEYPEALKDAKKCIE  420 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            33777889999999999999999999999999887765               799999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      ++|++.++|+|.|.|+..+.+|++|...|.++++++|++.++...+.+|...+
T Consensus       421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998865

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=5.5e-17  Score=132.14  Aligned_cols=127  Identities=34%  Similarity=0.426  Sum_probs=107.4

Q ss_pred             CCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHH
Q 028390           50 KMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS  129 (209)
Q Consensus        50 ~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~  129 (209)
                      .+..+++.+.+..++.+||.+|+.|.|++||.+|++||.+.|+.+.|               |.|++.||..+|+|++.+
T Consensus       105 a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF---------------YsNraAcY~~lgd~~~Vi  169 (606)
T KOG0547|consen  105 AMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF---------------YSNRAACYESLGDWEKVI  169 (606)
T ss_pred             ccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh---------------hhhHHHHHHHHhhHHHHH
Confidence            34677889999999999999999999999999999999999887764               999999999999999999


Q ss_pred             HHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHH
Q 028390          130 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP--NNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       130 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p--~~~~~~~~l~~l~~~~~~  192 (209)
                      ++|+++++++|+++++++||+.++..+|++++|+.+..- +-+..  +|..+.-.+.++...+..
T Consensus       170 ed~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv-~ci~~~F~n~s~~~~~eR~Lkk~a~  233 (606)
T KOG0547|consen  170 EDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTV-LCILEGFQNASIEPMAERVLKKQAM  233 (606)
T ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhH-HHHhhhcccchhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988754 33322  344444444554444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.70  E-value=4.2e-16  Score=127.54  Aligned_cols=117  Identities=21%  Similarity=0.319  Sum_probs=110.1

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .++..|..+|..|+|..|+..|.+||.+.|...               .+|.++|.++..+|++++|+.++.+++.++|+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~---------------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~   68 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA---------------ELYADRAQANIKLGNFTEAVADANKAIELDPS   68 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            467899999999999999999999999977654               47999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  193 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~  193 (209)
                      +..+++++|.+++.+|++++|+..|+++++++|+++.+...+..|..++...
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999888653

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.70  E-value=7.5e-16  Score=110.50  Aligned_cols=115  Identities=12%  Similarity=0.129  Sum_probs=106.5

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      +...|..++..|++++|+..|..++...|.+.               .++.++|.++..+|++++|+..|.+++.++|++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~   91 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW---------------RAHIALAGTWMMLKEYTTAINFYGHALMLDASH   91 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            55689999999999999999999999877654               479999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      +.+++++|.++..+|++++|+..|.+++.+.|+++........+...++.
T Consensus        92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~  141 (144)
T PRK15359         92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT  141 (144)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888887766654

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.68  E-value=2.7e-16  Score=123.65  Aligned_cols=120  Identities=25%  Similarity=0.368  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHH
Q 028390           54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT  133 (209)
Q Consensus        54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  133 (209)
                      ++.+..+..++++|+.||++|.|++|+.+|.+++...|..+.               .+.|+|.+|++++.|..|..+|+
T Consensus        91 ~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV---------------~~~NRA~AYlk~K~FA~AE~DC~  155 (536)
T KOG4648|consen   91 QQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV---------------YHINRALAYLKQKSFAQAEEDCE  155 (536)
T ss_pred             HHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCcc---------------chhhHHHHHHHHHHHHHHHHhHH
Confidence            445666777899999999999999999999999999887665               58999999999999999999999


Q ss_pred             HHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          134 KVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       134 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      .|+.+|..+.++|.|++.+...+|...+|..+++.++.|.|++.+..+.++.+..
T Consensus       156 ~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  156 AAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999998888888765

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=6.1e-16  Score=123.83  Aligned_cols=128  Identities=25%  Similarity=0.359  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      ..+....+++.|+..|+.|.|..|.+.|+.||.++|+...           .++.+|.|+|.+...+|+..+|+.+|+.+
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-----------~naklY~nra~v~~rLgrl~eaisdc~~A  313 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-----------TNAKLYGNRALVNIRLGRLREAISDCNEA  313 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-----------hhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence            3566788999999999999999999999999999887554           36789999999999999999999999999


Q ss_pred             hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      +.+||...+++.++|.|+..+++|++|+++|++++++..+ .+.++.+......+++.+.
T Consensus       314 l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkR  372 (486)
T KOG0550|consen  314 LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKR  372 (486)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999887 7888888888777776553

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=8.5e-16  Score=126.36  Aligned_cols=113  Identities=24%  Similarity=0.287  Sum_probs=107.2

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +...+++|+..|..|+|+.|+.+|+.||.+.|...               .+|.|++.+|.++|+|++|+++..+.++++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh---------------vlySnrsaa~a~~~~~~~al~da~k~~~l~   66 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH---------------VLYSNRSAAYASLGSYEKALKDATKTRRLN   66 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCcc---------------chhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            45678999999999999999999999999988743               489999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      |+|+++|.++|.++..+|+|++|+..|.++++.+|+|+.....+....
T Consensus        67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999999999999999999999999999888

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.65  E-value=6.2e-15  Score=128.99  Aligned_cols=136  Identities=25%  Similarity=0.280  Sum_probs=119.4

Q ss_pred             cCCCCCCceEEEEEEEcccccCCCCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHH
Q 028390           24 SELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQ  103 (209)
Q Consensus        24 ~~~ip~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~  103 (209)
                      .+.+|++..+....++..+. ....+.++.+++...+..+++.|+.+++.|+|++|+..|.++|.+.|+ +         
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~---------  160 (615)
T TIGR00990        92 KSTAPKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P---------  160 (615)
T ss_pred             cCCCCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h---------
Confidence            45567777777777666554 455688888889999999999999999999999999999999998764 2         


Q ss_pred             HHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390          104 ANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  176 (209)
Q Consensus       104 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~  176 (209)
                            ..|.|+|.||..+|+|++|+.+|+++++++|++.++++++|.+|..+|++++|+.+|..+..+++.+
T Consensus       161 ------~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~  227 (615)
T TIGR00990       161 ------VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR  227 (615)
T ss_pred             ------HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence                  3699999999999999999999999999999999999999999999999999999998888776644

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=8.1e-15  Score=114.58  Aligned_cols=108  Identities=28%  Similarity=0.385  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ...|..+++.||.+|+.++|..|+..|+++|.....+++           +++.+|+|+|.|.+.+|+|..|+.+|..++
T Consensus        78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----------lnavLY~NRAAa~~~l~NyRs~l~Dcs~al  146 (390)
T KOG0551|consen   78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----------LNAVLYTNRAAAQLYLGNYRSALNDCSAAL  146 (390)
T ss_pred             HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            347999999999999999999999999999998766665           578999999999999999999999999999


Q ss_pred             hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390          137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN  175 (209)
Q Consensus       137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~  175 (209)
                      .++|.+.++++|-|.|++.+..+..|..+++..+.++-+
T Consensus       147 ~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  147 KLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             hcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            999999999999999999999999999888777766533

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.61  E-value=3.7e-14  Score=100.34  Aligned_cols=117  Identities=20%  Similarity=0.220  Sum_probs=106.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +......|..++..|++++|+..|.+++...|..+               .++.++|.++..+|++++|+..+..++..+
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS---------------RYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44567899999999999999999999999876644               479999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      |.++..++.+|.++...|+++.|+..|+++++++|++.........+...++
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  133 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLE  133 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988877777766543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.60  E-value=5.7e-14  Score=100.20  Aligned_cols=109  Identities=8%  Similarity=0.070  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      .+..+.+...|..++..|++++|...|.-.+.++|....               .|+++|.|+..+|+|++|+..|.+++
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~---------------y~~gLG~~~Q~~g~~~~AI~aY~~A~   96 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD---------------YWFRLGECCQAQKHWGEAIYAYGRAA   96 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            345667889999999999999999999999999777554               69999999999999999999999999


Q ss_pred             hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028390          137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK  180 (209)
Q Consensus       137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  180 (209)
                      .++|+++.++++.|.|+..+|+.+.|...|+.++....+++.-.
T Consensus        97 ~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~  140 (157)
T PRK15363         97 QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQ  140 (157)
T ss_pred             hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHH
Confidence            99999999999999999999999999999999999875444433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.51  E-value=2.7e-13  Score=108.54  Aligned_cols=106  Identities=20%  Similarity=0.158  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+..+...|..+...|++..|+..|.+++.+.|+.+               .+|+++|.++..+|++++|+..++++++
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~Al~  126 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA---------------DAYNYLGIYLTQAGNFDAAYEAFDSVLE  126 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3466789999999999999999999999999977654               4799999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  178 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~  178 (209)
                      ++|++..+++++|.+++..|++++|+..++++++++|+++.
T Consensus       127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999999999999999999973

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.50  E-value=1.1e-13  Score=116.13  Aligned_cols=132  Identities=17%  Similarity=0.085  Sum_probs=108.3

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      ...++.+.|+.+-..+.|++|+..|.+|+.+-|..               +.++-|+|.+|..+|..+-||..|.++|++
T Consensus       251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~---------------A~a~gNla~iYyeqG~ldlAI~~Ykral~~  315 (966)
T KOG4626|consen  251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH---------------AVAHGNLACIYYEQGLLDLAIDTYKRALEL  315 (966)
T ss_pred             chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc---------------hhhccceEEEEeccccHHHHHHHHHHHHhc
Confidence            35667777888777788888888888877765543               457888888888888888999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  206 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  206 (209)
                      +|+.+.+|.++|.++-..|+..+|+.+|++++.+.|+++++...|..++..+...+...+ .|.+.|.
T Consensus       316 ~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~-ly~~al~  382 (966)
T KOG4626|consen  316 QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR-LYLKALE  382 (966)
T ss_pred             CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH-HHHHHHh
Confidence            999999999999999999999999999999999999999999999999988888877654 6666543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.47  E-value=1.8e-12  Score=97.82  Aligned_cols=110  Identities=15%  Similarity=0.135  Sum_probs=98.0

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHH-HhhcC--HHHHHHHHHHH
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK-LKLED--YSETSSLCTKV  135 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~a  135 (209)
                      .+..+...|..+...|+++.|+..|.+++.+.|+++.               ++.++|.++ ...|+  +++|+..++++
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~---------------~~~~lA~aL~~~~g~~~~~~A~~~l~~a  136 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE---------------LYAALATVLYYQAGQHMTPQTREMIDKA  136 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            3566889999999999999999999999999887654               789999975 67787  59999999999


Q ss_pred             hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390          136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY  183 (209)
Q Consensus       136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  183 (209)
                      ++.+|+++.+++.+|.++...|++++|+..++++++++|.+.+-...+
T Consensus       137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV  184 (198)
T ss_pred             HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            999999999999999999999999999999999999998876554444

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.47  E-value=2.2e-13  Score=114.29  Aligned_cols=121  Identities=13%  Similarity=0.092  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ...+..+.+.|..+-++|.+++|+.+|+.||++.|.               .+++|+|+|.+|-.+|+...|++.|++||
T Consensus       385 p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~---------------fAda~~NmGnt~ke~g~v~~A~q~y~rAI  449 (966)
T KOG4626|consen  385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT---------------FADALSNMGNTYKEMGDVSAAIQCYTRAI  449 (966)
T ss_pred             hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch---------------HHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence            334555666666666666666666666666666443               46789999999999999999999999999


Q ss_pred             hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      .++|...+++.++|.+|...|+..+|++.|+.++++.|+.+++-..+..+..-+-.
T Consensus       450 ~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcd  505 (966)
T KOG4626|consen  450 QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCD  505 (966)
T ss_pred             hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999888888887766543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.47  E-value=2.9e-12  Score=88.18  Aligned_cols=112  Identities=17%  Similarity=0.169  Sum_probs=98.9

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP  140 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  140 (209)
                      ..+...|..++..|++++|+..|.+++...|..+.            ...+++.+|.++...|+++.|+..+..++..+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p   70 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP   70 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence            45678999999999999999999999998765432            134689999999999999999999999999988


Q ss_pred             Cc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 028390          141 LN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  184 (209)
Q Consensus       141 ~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  184 (209)
                      ++   ..+++.+|.++..+|++++|...+.+++...|+++.+.....
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  117 (119)
T TIGR02795        71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK  117 (119)
T ss_pred             CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            85   678999999999999999999999999999999987766544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.46  E-value=2.4e-12  Score=112.84  Aligned_cols=138  Identities=15%  Similarity=0.134  Sum_probs=80.1

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC------------hHH-------HHHHHHHHHHHHhHHHHH
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------DDE-------KHQANGLRLSCYLNNAAC  118 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~------------~~~-------~~~~~~~~~~~~~~~a~~  118 (209)
                      ..+..+...|..++..|++++|+..|.+++.+.|......            .++       .-...+....++.++|.+
T Consensus       329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~  408 (615)
T TIGR00990       329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL  408 (615)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3455677888899999999999999999998866533210            000       001111223455555555


Q ss_pred             HHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          119 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       119 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      ++.+|++++|+.+|++++.++|++..+++.+|.++..+|++++|+..|++++...|+++.+...+..+....+...+
T Consensus       409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~  485 (615)
T TIGR00990       409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDE  485 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555444433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.46  E-value=3.6e-13  Score=84.21  Aligned_cols=66  Identities=30%  Similarity=0.475  Sum_probs=63.8

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCC
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDP  174 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~l~p  174 (209)
                      +.+|.++|.+++..|+|++|+..|.++++++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4579999999999999999999999999999999999999999999999 79999999999999998

...

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.42  E-value=5.1e-13  Score=109.30  Aligned_cols=120  Identities=24%  Similarity=0.277  Sum_probs=113.3

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..++++|+.++..+.|+.|+..|.+||++.|+...               .+.+++..+++.++|..|+.++.++++++
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~---------------~~anRa~a~lK~e~~~~Al~Da~kaie~d   68 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAI---------------YFANRALAHLKVESFGGALHDALKAIELD   68 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCccee---------------eechhhhhheeechhhhHHHHHHhhhhcC
Confidence            456779999999999999999999999999888766               48999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  194 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~  194 (209)
                      |...++|+++|.+...++++.+|..+|++...+.|+++.+.+.+..|...+++.+
T Consensus        69 P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~  123 (476)
T KOG0376|consen   69 PTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK  123 (476)
T ss_pred             chhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999998887754

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=1.6e-12  Score=97.76  Aligned_cols=114  Identities=28%  Similarity=0.346  Sum_probs=101.6

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+++.|+.+|..+.|..|+..|.+||.+.|..+.               .|.|++.||+++++|+.+..+|.+++++
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~---------------Y~tnralchlk~~~~~~v~~dcrralql   73 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVAS---------------YYTNRALCHLKLKHWEPVEEDCRRALQL   73 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcch---------------hhhhHHHHHHHhhhhhhhhhhHHHHHhc
Confidence            4677899999999999999999999999999887655               5999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHH
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTID-----PNNRVVKLVYMELK  187 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~-----p~~~~~~~~l~~l~  187 (209)
                      +|+.++++|-+|.++.....|+.|+..+.++..+.     |--.++.+.|..++
T Consensus        74 ~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak  127 (284)
T KOG4642|consen   74 DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK  127 (284)
T ss_pred             ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence            99999999999999999999999999999997762     22246666666654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.38  E-value=3e-11  Score=89.20  Aligned_cols=111  Identities=25%  Similarity=0.242  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHH
Q 028390           54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT  133 (209)
Q Consensus        54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  133 (209)
                      ......+..+...|..+...|++++|+.+|.+++...+....            ...++.++|.++..+|++++|+..+.
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~   96 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------------RSYILYNMGIIYASNGEHDKALEYYH   96 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345566778899999999999999999999999987654321            24579999999999999999999999


Q ss_pred             HHhhhCCCchHHHHHHHHHHhccCC--------------HHHHHHHHHHHHhcCCCC
Q 028390          134 KVLELEPLNVKALYRRSQAHLKTSE--------------LEKAEADIKRALTIDPNN  176 (209)
Q Consensus       134 ~al~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~a~~l~p~~  176 (209)
                      +++...|.+..++..+|.++..+|+              +..|...+++++.++|++
T Consensus        97 ~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603         97 QALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            9999999999999999999999988              678888888888889987

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=8.6e-12  Score=101.61  Aligned_cols=122  Identities=14%  Similarity=0.095  Sum_probs=103.2

Q ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHH
Q 028390           67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL  146 (209)
Q Consensus        67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  146 (209)
                      ||-+--+++.++|+.+|+.|++++|...               .+|.-+|.=|..+++...|++.|.+|++++|.+..+|
T Consensus       337 aNYYSlr~eHEKAv~YFkRALkLNp~~~---------------~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAW  401 (559)
T KOG1155|consen  337 ANYYSLRSEHEKAVMYFKRALKLNPKYL---------------SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAW  401 (559)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhcCcchh---------------HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHH
Confidence            5555567889999999999999987754               3788899999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          147 YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       147 ~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      |.+|++|.-++-..-|+-+|++|+++-|+|+-++..|..|+..+....+..+ =|++.
T Consensus       402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK-Cykra  458 (559)
T KOG1155|consen  402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK-CYKRA  458 (559)
T ss_pred             hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH-HHHHH
Confidence            9999999988888889999999999999999999999999888887776644 55554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.36  E-value=9.8e-12  Score=98.19  Aligned_cols=119  Identities=24%  Similarity=0.264  Sum_probs=103.9

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+....+.|+.++..|++.+|+..|..||+.+|+.               -.+++.+|.+|+.+|+...|+.+++++|+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---------------Y~aifrRaT~yLAmGksk~al~Dl~rVle  100 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---------------YQAIFRRATVYLAMGKSKAALQDLSRVLE  100 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---------------HHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence            346778899999999999999999999999987763               34789999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK---LVYMELKDKQR  191 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~---~~l~~l~~~~~  191 (209)
                      +.|+...+...+|.++.++|+++.|..+|+.++.-+|++....   ..+..+.+.+.
T Consensus       101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~  157 (504)
T KOG0624|consen  101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWV  157 (504)
T ss_pred             cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHH
Confidence            9999999999999999999999999999999999999765444   44444444443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=3.7e-11  Score=97.97  Aligned_cols=133  Identities=14%  Similarity=0.101  Sum_probs=120.0

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      +....+--.|..+...+....|+..|+.||+++|.+..               +|+.+|+.|-.++...=|+-++++|+.
T Consensus       362 ~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR---------------AWYGLGQaYeim~Mh~YaLyYfqkA~~  426 (559)
T KOG1155|consen  362 KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR---------------AWYGLGQAYEIMKMHFYALYYFQKALE  426 (559)
T ss_pred             chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH---------------HHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence            33556777899999999999999999999999988765               799999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  206 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  206 (209)
                      +.|+++..|..+|.||.++++.++|+..|++++.....+..+...++.+.++++..++. ...|.+-+.
T Consensus       427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA-a~~yek~v~  494 (559)
T KOG1155|consen  427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA-AQYYEKYVE  494 (559)
T ss_pred             cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH-HHHHHHHHH
Confidence            99999999999999999999999999999999999988999999999999999998765 335555443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=4.2e-12  Score=107.10  Aligned_cols=137  Identities=17%  Similarity=0.132  Sum_probs=98.2

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC---------CChHHHHH----------HHHHHHHHHhHHHHHH
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS---------FTDDEKHQ----------ANGLRLSCYLNNAACK  119 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~---------~~~~~~~~----------~~~~~~~~~~~~a~~~  119 (209)
                      ..+.|...||.+--+++++.|++.|.+|++++|...-         ...++.+.          .++-+-.+|+.+|.+|
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy  499 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY  499 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence            3567889999999999999999999999999774211         00122211          1233334677777777


Q ss_pred             HhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          120 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       120 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      +++++++.|.-++.+|++++|.+.-..+..|..+.++|+.++|+..|++|+.++|.|+-.......+...+..+.+
T Consensus       500 ~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e  575 (638)
T KOG1126|consen  500 LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE  575 (638)
T ss_pred             eccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence            7777777777777777777777777777777777777777777777777777777777777777776666555444

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.33  E-value=2.5e-11  Score=86.98  Aligned_cols=100  Identities=11%  Similarity=-0.025  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCH
Q 028390           80 SKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL  159 (209)
Q Consensus        80 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~  159 (209)
                      ...|.+++.+.|+                  .+.++|.++...|++++|+..|.+++.++|.+..+++.+|.++..+|++
T Consensus        13 ~~~~~~al~~~p~------------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~   74 (144)
T PRK15359         13 EDILKQLLSVDPE------------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY   74 (144)
T ss_pred             HHHHHHHHHcCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence            3568888887665                  2567899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028390          160 EKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ  197 (209)
Q Consensus       160 ~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~  197 (209)
                      ++|+..|.+++.++|+++.++..+..+...+++..+..
T Consensus        75 ~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi  112 (144)
T PRK15359         75 TTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAR  112 (144)
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999998887776653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.33  E-value=1.6e-11  Score=96.96  Aligned_cols=137  Identities=18%  Similarity=0.237  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      +++.+....+.+......++|.++++.+.+.++..|..+..           ....+..++.|+..-+++.+||+.|.++
T Consensus       265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i-----------r~~~~r~~c~C~~~d~~~~eAiqqC~ev  333 (504)
T KOG0624|consen  265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI-----------RYNGFRVLCTCYREDEQFGEAIQQCKEV  333 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce-----------eeeeeheeeecccccCCHHHHHHHHHHH
Confidence            34556677788888999999999999999999987764443           2335678899999999999999999999


Q ss_pred             hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390          136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  206 (209)
Q Consensus       136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  206 (209)
                      |+++|+++.+++.+|.+|.--..|+.|+.+|++|.+++|+|..+...+.+.++..++..   +..|.|.++
T Consensus       334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~---kRDYYKILG  401 (504)
T KOG0624|consen  334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG---KRDYYKILG  401 (504)
T ss_pred             HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc---cchHHHHhh
Confidence            99999999999999999999999999999999999999999999999998877665543   445555544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.32  E-value=5.9e-11  Score=107.92  Aligned_cols=119  Identities=5%  Similarity=0.003  Sum_probs=81.5

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .+...|..+.+.|++++|+..|.+++.+.|+.+               .++.++|.++...|++++|+..+.++++++|+
T Consensus       611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~---------------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~  675 (987)
T PRK09782        611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNS---------------NYQAALGYALWDSGDIAQSREMLERAHKGLPD  675 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            445566666666666666666666666655533               35777777777777777777777777777777


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      ++.+++++|.++..+|++++|+..|+++++++|++..+......+..+...++.
T Consensus       676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~  729 (987)
T PRK09782        676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRR  729 (987)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHH
Confidence            777777777777777777777777777777777776666666655554444443

>PRK15331 chaperone protein SicA; Provisional

Probab=99.32  E-value=4.8e-11  Score=85.64  Aligned_cols=119  Identities=8%  Similarity=0.072  Sum_probs=102.4

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ...+.....|..+|..|++++|...|.-.+.+.+.+++               .+..+|.|+..+++|++|+..|..+..
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~---------------Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~   99 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD---------------YTMGLAAVCQLKKQFQKACDLYAVAFT   99 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566789999999999999999999999888776654               589999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      ++++++...|..|.||..+|+.+.|...|..++. .|.+..+...-....+.+..
T Consensus       100 l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~  153 (165)
T PRK15331        100 LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT  153 (165)
T ss_pred             cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999998 57766665544444444433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.31  E-value=2.1e-10  Score=88.67  Aligned_cols=118  Identities=18%  Similarity=0.192  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ...+..+...|..++..|+++.|+..|.+++...|..+.            ...++..+|.++...|++++|+..+.+++
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~la~~~~~~~~~~~A~~~~~~~l   97 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------------AEQAQLDLAYAYYKSGDYAEAIAAADRFI   97 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            334667789999999999999999999999998776543            23578999999999999999999999999


Q ss_pred             hhCCCchH---HHHHHHHHHhcc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          137 ELEPLNVK---ALYRRSQAHLKT--------SELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       137 ~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      +..|+++.   +++.+|.++...        |+++.|+..|++++..+|++......+..+
T Consensus        98 ~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~  158 (235)
T TIGR03302        98 RLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM  158 (235)
T ss_pred             HHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence            99998876   799999999987        889999999999999999998776555444

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.30  E-value=1.3e-11  Score=76.11  Aligned_cols=64  Identities=27%  Similarity=0.348  Sum_probs=60.2

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390          114 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  177 (209)
Q Consensus       114 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~  177 (209)
                      .+|..++..|+|++|+..++.++..+|++..+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5789999999999999999999999999999999999999999999999999999999999985

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.30  E-value=2.1e-10  Score=84.29  Aligned_cols=110  Identities=18%  Similarity=0.136  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      ....+..+...|..+...|++++|+..|.+++.+.+....            ...++.++|.++...|++++|+..+.++
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------------~~~~~~~lg~~~~~~g~~~eA~~~~~~A   98 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD------------RSYILYNIGLIHTSNGEHTKALEYYFQA   98 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh------------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3446778899999999999999999999999998654221            2457999999999999999999999999


Q ss_pred             hhhCCCchHHHHHHHHHHh-------ccCCHH-------HHHHHHHHHHhcCCCCH
Q 028390          136 LELEPLNVKALYRRSQAHL-------KTSELE-------KAEADIKRALTIDPNNR  177 (209)
Q Consensus       136 l~~~p~~~~~~~~~a~~~~-------~~~~~~-------~A~~~~~~a~~l~p~~~  177 (209)
                      +.++|.+..++..+|.++.       .+|+++       +|...+++++..+|.+.
T Consensus        99 l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         99 LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            9999999999999999998       777877       55566666777788654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.29  E-value=1.3e-11  Score=80.29  Aligned_cols=83  Identities=29%  Similarity=0.378  Sum_probs=72.5

Q ss_pred             cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHH
Q 028390           73 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA  152 (209)
Q Consensus        73 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~  152 (209)
                      .|+|+.|+..|.+++...|.++             ....+.++|.|++..|+|++|+..+++ +..+|.+....+.+|.|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~-------------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~   67 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP-------------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC   67 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH-------------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCCh-------------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence            6899999999999999987521             134678899999999999999999999 88999999999999999


Q ss_pred             HhccCCHHHHHHHHHHH
Q 028390          153 HLKTSELEKAEADIKRA  169 (209)
Q Consensus       153 ~~~~~~~~~A~~~~~~a  169 (209)
                      +..+|++++|+..|+++
T Consensus        68 ~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   68 LLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHTT-HHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhcC
Confidence            99999999999999875

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.28  E-value=4.9e-11  Score=77.32  Aligned_cols=99  Identities=36%  Similarity=0.443  Sum_probs=89.2

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .+...|..++..|++.+|+..+.+++...|..+               .++..+|.++...+++++|+..+..++...|.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   66 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------------DAYYNLAAAYYKLGKYEEALEDYEKALELDPD   66 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            356789999999999999999999998765532               46899999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPN  175 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~  175 (209)
                      +..+++.+|.++...|+++.|...+.+++..+|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999988874

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.28  E-value=1.1e-10  Score=88.10  Aligned_cols=118  Identities=13%  Similarity=0.103  Sum_probs=103.2

Q ss_pred             cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHH
Q 028390           73 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA  152 (209)
Q Consensus        73 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~  152 (209)
                      .++.++++..+.+++...|++.               ..|..+|.+|..+|++++|+..|.+++.++|++..+++.+|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~---------------~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~a  116 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNS---------------EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATV  116 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5667888888888888876654               4799999999999999999999999999999999999999998


Q ss_pred             H-hccCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390          153 H-LKTSE--LEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  206 (209)
Q Consensus       153 ~-~~~~~--~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  206 (209)
                      + ...|+  +++|...++++++++|++..+...+..+......+.+... .|.+++.
T Consensus       117 L~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~aL~  172 (198)
T PRK10370        117 LYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE-LWQKVLD  172 (198)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH-HHHHHHh
Confidence            5 67787  5999999999999999999999999999998888876644 6666654

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=1.2e-11  Score=97.73  Aligned_cols=152  Identities=27%  Similarity=0.342  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh---HH-HHHHHHHHHHHHhHHHHHHHhhcCHHHHHH
Q 028390           55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD---DE-KHQANGLRLSCYLNNAACKLKLEDYSETSS  130 (209)
Q Consensus        55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  130 (209)
                      .........++.|+..+++++|..|...|.++++.....+....   ++ ......+...++.|++.|-++.+.+..|+.
T Consensus       217 ~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~  296 (372)
T KOG0546|consen  217 KALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARF  296 (372)
T ss_pred             hhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCccee
Confidence            34566777889999999999999999999999998774222211   11 234667788889999999999999999999


Q ss_pred             HHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390          131 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  206 (209)
Q Consensus       131 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  206 (209)
                      .+..+++.++...+++|+++.++..+.+++.|+.+++.+....|++..+...+..+...+.++..++++.+.+||+
T Consensus       297 ~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  297 RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS  372 (372)
T ss_pred             ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999985

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.27  E-value=5.2e-10  Score=84.95  Aligned_cols=136  Identities=13%  Similarity=0.119  Sum_probs=99.4

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC------------hHHH-HHH--------HHHHHHHHhHHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------DDEK-HQA--------NGLRLSCYLNNAAC  118 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~------------~~~~-~~~--------~~~~~~~~~~~a~~  118 (209)
                      ...+...|..++..|+++.|+..|.+++...|..+...            .++. ...        .......+.++|.+
T Consensus        65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  144 (234)
T TIGR02521        65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC  144 (234)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence            45566778888888888888888888887755432210            0000 000        01123467788889


Q ss_pred             HHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          119 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       119 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      +...|++++|+..+.+++..+|++..+++.+|.++...|++++|...+++++.+.|.++.....+..+....+....
T Consensus       145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (234)
T TIGR02521       145 ALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA  221 (234)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence            99999999999999999999998888889999999999999999999999988888887777777777665555444

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=8.6e-11  Score=97.80  Aligned_cols=119  Identities=19%  Similarity=0.172  Sum_probs=99.6

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      ..+.|...|..+.|.+|+.+|..++...++....        ...+...++|+|.++.+++.+++|+..++++|.+.|.+
T Consensus       417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e--------~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~  488 (611)
T KOG1173|consen  417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE--------KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD  488 (611)
T ss_pred             hhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc--------ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence            5577777888888888888888887544332210        01256679999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      +.++..+|.+|..+|+++.|+..|.+++-+.|+|..+...|...-+.
T Consensus       489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999998888877765443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.25  E-value=3.3e-10  Score=86.05  Aligned_cols=137  Identities=19%  Similarity=0.138  Sum_probs=79.8

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC------------hHHH-------HHHHHHHHHHHhHHHHH
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------DDEK-------HQANGLRLSCYLNNAAC  118 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~------------~~~~-------~~~~~~~~~~~~~~a~~  118 (209)
                      ..+..+...|..++..|++++|+..|.+++...|......            .++.       -...+....++.++|.+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  108 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF  108 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            3467778899999999999999999999998865532210            0000       00011112344455555


Q ss_pred             HHhhcCHHHHHHHHHHHhhhC--CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390          119 KLKLEDYSETSSLCTKVLELE--PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  194 (209)
Q Consensus       119 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~  194 (209)
                      +...|++++|+..+.+++...  +.....++.+|.++...|++++|...+.+++..+|++......+..+....++..
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence            555555555555555555432  2334455556666666666666666666666666666555555555555444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=1.8e-10  Score=94.63  Aligned_cols=146  Identities=17%  Similarity=0.230  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC-------------h------HHHHHHHHHHHHHHhHHHH
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT-------------D------DEKHQANGLRLSCYLNNAA  117 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~-------------~------~~~~~~~~~~~~~~~~~a~  117 (209)
                      ...+..+.-.|.-+|-.|++-.|...+.++|.+.+......             .      .+..++++....+|+.+|+
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ  402 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ  402 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence            34466777788888888888888888888888766544310             0      1112234444556777777


Q ss_pred             HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028390          118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ  197 (209)
Q Consensus       118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~  197 (209)
                      +++-+++|++|+.+|++++.++|.++-++..++-+.+++++++++...|+.+.+..|+.+++....+.+.-...++.+..
T Consensus       403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~  482 (606)
T KOG0547|consen  403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAV  482 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777766654


Q ss_pred             HHHHHh
Q 028390          198 AEIFGT  203 (209)
Q Consensus       198 ~~~~~~  203 (209)
                      + .|.+
T Consensus       483 k-~YD~  487 (606)
T KOG0547|consen  483 K-QYDK  487 (606)
T ss_pred             H-HHHH
Confidence            4 3443

>PRK12370 invasion protein regulator; Provisional

Probab=99.24  E-value=2e-10  Score=99.52  Aligned_cols=91  Identities=18%  Similarity=0.157  Sum_probs=46.5

Q ss_pred             cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHH
Q 028390           73 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA  152 (209)
Q Consensus        73 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~  152 (209)
                      .+++++|+..+.+|+.+.|.++.               ++..+|.++...|++++|+..++++++++|+++.+++.+|.+
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  381 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQ---------------ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWN  381 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHH---------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34455555555555555443322               344555555555555555555555555555555555555555


Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCHH
Q 028390          153 HLKTSELEKAEADIKRALTIDPNNRV  178 (209)
Q Consensus       153 ~~~~~~~~~A~~~~~~a~~l~p~~~~  178 (209)
                      +...|++++|+..++++++++|.++.
T Consensus       382 l~~~G~~~eAi~~~~~Al~l~P~~~~  407 (553)
T PRK12370        382 LFMAGQLEEALQTINECLKLDPTRAA  407 (553)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCChh
Confidence            55555555555555555555555443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.24  E-value=2.5e-10  Score=103.91  Aligned_cols=116  Identities=16%  Similarity=0.107  Sum_probs=98.7

Q ss_pred             HcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHH
Q 028390           72 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQ  151 (209)
Q Consensus        72 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~  151 (209)
                      ..|++++|+..|.+++...|+                ..++.++|.++.++|++++|+..+.+++.++|+++.+++++|.
T Consensus       588 ~~Gr~~eAl~~~~~AL~l~P~----------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~  651 (987)
T PRK09782        588 IPGQPELALNDLTRSLNIAPS----------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY  651 (987)
T ss_pred             hCCCHHHHHHHHHHHHHhCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            336666666666666665442                3478999999999999999999999999999999999999999


Q ss_pred             HHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          152 AHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       152 ~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      ++...|++++|+..|+++++++|+++.+...+..+...+++...... .|.+.
T Consensus       652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~-~l~~A  703 (987)
T PRK09782        652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH-YARLV  703 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHH
Confidence            99999999999999999999999999999999999988888776644 44444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.24  E-value=5.8e-10  Score=87.48  Aligned_cols=114  Identities=11%  Similarity=0.039  Sum_probs=98.6

Q ss_pred             HHHHHHhHHH-HHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           61 ERKKHDGNLL-FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        61 ~~~~~~g~~~-~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ...+..|..+ +..|+|++|+..|...+...|+..-            ...+++.+|.+|+..|++++|+..|.+++...
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y  210 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------------QPNANYWLGQLNYNKGKKDDAAYYFASVVKNY  210 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            3446677766 6679999999999999999887542            24578999999999999999999999999988


Q ss_pred             CCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          140 PLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       140 p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      |++   +.+++.+|.++..+|+++.|...|+++++..|++..+.....++
T Consensus       211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            875   78899999999999999999999999999999998777665555

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.24  E-value=2.4e-11  Score=75.79  Aligned_cols=66  Identities=30%  Similarity=0.424  Sum_probs=61.2

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-CHHHHHHHHHHHhhh
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLEL  138 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~  138 (209)
                      +..+...|..++..|+|++|+..|.+++.+.|+.               ..++.++|.|+..+| ++++|+.++++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---------------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---------------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---------------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            6678899999999999999999999999997764               458999999999999 799999999999999


Q ss_pred             CC
Q 028390          139 EP  140 (209)
Q Consensus       139 ~p  140 (209)
                      +|
T Consensus        68 ~P   69 (69)
T PF13414_consen   68 DP   69 (69)
T ss_dssp             ST
T ss_pred             Cc
Confidence            98

...

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.23  E-value=2.3e-10  Score=85.83  Aligned_cols=136  Identities=21%  Similarity=0.131  Sum_probs=82.8

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC------------h----HH---HHHHHHHHHHHHhHHHHH
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------D----DE---KHQANGLRLSCYLNNAAC  118 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~------------~----~~---~~~~~~~~~~~~~~~a~~  118 (209)
                      ..+......|..++..|++..|...+.+||+.+|+....+            +    +.   --.+.+-...+++|-|.-
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F  112 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence            3355556677777777777777777777777665543210            0    00   001112223356666666


Q ss_pred             HHhhcCHHHHHHHHHHHhhhC--CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 028390          119 KLKLEDYSETSSLCTKVLELE--PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  193 (209)
Q Consensus       119 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~  193 (209)
                      ...+|+|++|...+++|+.-.  +....++-++|.|..+.|+++.|..+|+++++++|+++.....+....-.-.++
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y  189 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY  189 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence            666666666666666665431  333566777788888888888888888888888888877777776665444333

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.22  E-value=7.1e-11  Score=93.77  Aligned_cols=130  Identities=16%  Similarity=0.151  Sum_probs=97.3

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ...+...|..+.+.|++++|+..|.+++...|.++.               +...++.++...|+++++...+.......
T Consensus       146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---------------~~~~l~~~li~~~~~~~~~~~l~~~~~~~  210 (280)
T PF13429_consen  146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD---------------ARNALAWLLIDMGDYDEAREALKRLLKAA  210 (280)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---------------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------------HHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence            445778888888999999999999999999887543               67888888999999999888888888887


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                      |.++..+..+|.++..+|++++|+.+|++++..+|+|+.+...++.+....+...+... .+.+.+
T Consensus       211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~-~~~~~~  275 (280)
T PF13429_consen  211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR-LRRQAL  275 (280)
T ss_dssp             HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence            88888889999999999999999999999999999999999999999988887776533 444443

>PRK12370 invasion protein regulator; Provisional

Probab=99.22  E-value=2.2e-10  Score=99.19  Aligned_cols=113  Identities=9%  Similarity=0.019  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhc
Q 028390           76 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK  155 (209)
Q Consensus        76 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~  155 (209)
                      +++|+..|.+|+.+.|..+               .+++++|.++...|++++|+..++++++++|.++.+++.++.+++.
T Consensus       354 ~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~  418 (553)
T PRK12370        354 YIVGSLLFKQANLLSPISA---------------DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY  418 (553)
T ss_pred             HHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence            5678889999999877654               3789999999999999999999999999999998888888888888


Q ss_pred             cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          156 TSELEKAEADIKRALTID-PNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       156 ~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      .|++++|+..+++++... |+++.....+..+...+++..+... .+.++
T Consensus       419 ~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~-~~~~~  467 (553)
T PRK12370        419 HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARK-LTKEI  467 (553)
T ss_pred             ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHH-HHHHh
Confidence            999999999999999875 7888888889998887777666543 34443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.21  E-value=4e-10  Score=85.97  Aligned_cols=122  Identities=18%  Similarity=0.160  Sum_probs=111.2

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .+...|...+..|+|..|+..++++..+.|++..               +|+.+|.+|.+.|++++|...|.+++++.|.
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~---------------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~  166 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE---------------AWNLLGAALDQLGRFDEARRAYRQALELAPN  166 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh---------------hhhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence            3445999999999999999999999999888765               6999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA  198 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~  198 (209)
                      .+.+..++|..|+-.|+++.|...+..+...-+.+..+...+..+-..+..+...++
T Consensus       167 ~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         167 EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence            999999999999999999999999999999999999999999988777666655443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=6.6e-11  Score=100.02  Aligned_cols=135  Identities=13%  Similarity=0.100  Sum_probs=119.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHH
Q 028390           47 PFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS  126 (209)
Q Consensus        47 ~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  126 (209)
                      ..+..+..-...-..+|+-.|..+.++++++.|..+|.+|+.+.|....               +..-+|.++.++|+.+
T Consensus       476 ~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv---------------i~~~~g~~~~~~k~~d  540 (638)
T KOG1126|consen  476 KSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV---------------ILCHIGRIQHQLKRKD  540 (638)
T ss_pred             HHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh---------------HHhhhhHHHHHhhhhh
Confidence            3333333344556788999999999999999999999999999887554               6788999999999999


Q ss_pred             HHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       127 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      +|+..+++|+.+||.++-..|.+|.+++.++++++|+..+++.-++.|++..+...+.++..+++.....
T Consensus       541 ~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A  610 (638)
T KOG1126|consen  541 KALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA  610 (638)
T ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence            9999999999999999999999999999999999999999999999999999999999999988765443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.21  E-value=4.6e-10  Score=98.73  Aligned_cols=130  Identities=6%  Similarity=-0.044  Sum_probs=117.0

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..++..|......|.+++|...+..++++.|+.               ..+..+++.+..+++++++|+..+++++..+
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---------------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~  150 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS---------------SEAFILMLRGVKRQQGIEAGRAEIELYFSGG  150 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence            5668889999999999999999999999997774               4589999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                      |++..+++.+|.++.++|++++|+..|++++..+|+++.++-.+..+.....+..... ..|.+.+
T Consensus       151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~-~~~~~a~  215 (694)
T PRK15179        151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR-DVLQAGL  215 (694)
T ss_pred             CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Confidence            9999999999999999999999999999999999999999999999988877776653 3555544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.20  E-value=8e-10  Score=82.99  Aligned_cols=63  Identities=24%  Similarity=0.162  Sum_probs=32.2

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      ..+|..+|.+|.++|+.+.|-+.|.+|+.++|++.+++.+.|--++.+|++++|.+.|++|+.
T Consensus        69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~  131 (250)
T COG3063          69 YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA  131 (250)
T ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence            344455555555555555555555555555555555555555555555555555555555543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.20  E-value=3.8e-10  Score=90.39  Aligned_cols=112  Identities=11%  Similarity=-0.033  Sum_probs=96.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHH
Q 028390           74 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAH  153 (209)
Q Consensus        74 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~  153 (209)
                      +..+.++..++++|...+-++.           .....|+++|.++..+|++++|+..+.++++++|+++.+++.+|.++
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~-----------~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  108 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDE-----------ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL  108 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcH-----------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4667788888888864432222           23567999999999999999999999999999999999999999999


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          154 LKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       154 ~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      ..+|+++.|+..|+++++++|++..+...+..+....+...+.
T Consensus       109 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA  151 (296)
T PRK11189        109 TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA  151 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999999999999999888887666555544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.19  E-value=4.4e-10  Score=99.12  Aligned_cols=116  Identities=18%  Similarity=0.137  Sum_probs=90.9

Q ss_pred             HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHH----HHHHHHHHhhhCCC
Q 028390           66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSE----TSSLCTKVLELEPL  141 (209)
Q Consensus        66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~~p~  141 (209)
                      .|..+...|++++|+..|.+++...|.+               ..++.++|.++..+|++++    |+..+++++.++|+
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~~~p~~---------------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~  282 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALARGLDG---------------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD  282 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence            4566777888888888888888775543               3467788888888888875    78888888888888


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      +..++..+|.++...|++++|+..+++++.++|+++.+...+..+....++..+.
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA  337 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAA  337 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            8888888888888888888888888888888888888888887777666665544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.17  E-value=2.5e-10  Score=80.57  Aligned_cols=101  Identities=15%  Similarity=0.043  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHH
Q 028390           81 KKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELE  160 (209)
Q Consensus        81 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~  160 (209)
                      ..|.+++...|..               ..+...+|.+++..|++++|+..++.++..+|.++.+++++|.++..+|+++
T Consensus         4 ~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~   68 (135)
T TIGR02552         4 ATLKDLLGLDSEQ---------------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE   68 (135)
T ss_pred             hhHHHHHcCChhh---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            3567777765553               3468999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          161 KAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       161 ~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      +|...+++++.++|+++.....+..+....++....
T Consensus        69 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A  104 (135)
T TIGR02552        69 EAIDAYALAAALDPDDPRPYFHAAECLLALGEPESA  104 (135)
T ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999998888776654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.17  E-value=2.3e-10  Score=72.14  Aligned_cols=71  Identities=25%  Similarity=0.415  Sum_probs=65.9

Q ss_pred             HHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          116 AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       116 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      ..+|+..++|+.|+..+++++.++|+++..++.+|.++..+|++.+|..+|.++++..|+++.+......+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            46889999999999999999999999999999999999999999999999999999999998887765543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.16  E-value=6.4e-11  Score=98.74  Aligned_cols=98  Identities=18%  Similarity=0.183  Sum_probs=91.9

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      ....|..|+-.|+|++|+.+|+.||...|.+..               +|+.+|.+...-.+.++|+..|++|+++.|..
T Consensus       433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~---------------lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y  497 (579)
T KOG1125|consen  433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL---------------LWNRLGATLANGNRSEEAISAYNRALQLQPGY  497 (579)
T ss_pred             HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH---------------HHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence            446899999999999999999999999887654               79999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390          143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPN  175 (209)
Q Consensus       143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~  175 (209)
                      +.+.|++|.+++.+|.|++|..+|-.|+.+.+.
T Consensus       498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999998654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.16  E-value=9.7e-10  Score=96.99  Aligned_cols=121  Identities=8%  Similarity=0.001  Sum_probs=101.7

Q ss_pred             HHHHHHHhHHHHHcCCHHH----HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWR----ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      ...+...|..++..|++++    |+..|.+++...|++.               .++.++|.++...|++++|+..++++
T Consensus       246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~g~~~eA~~~l~~a  310 (656)
T PRK15174        246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV---------------RIVTLYADALIRTGQNEKAIPLLQQS  310 (656)
T ss_pred             HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3445678999999999986    8999999999877643               47899999999999999999999999


Q ss_pred             hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      +.++|++..+++.+|.++..+|++++|+..|++++..+|++......+..+........+
T Consensus       311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de  370 (656)
T PRK15174        311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE  370 (656)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence            999999999999999999999999999999999999999987665555555555544443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=99.15  E-value=1.8e-09  Score=74.38  Aligned_cols=106  Identities=22%  Similarity=0.133  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHH
Q 028390           54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT  133 (209)
Q Consensus        54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  133 (209)
                      ...++....+--+|..+-..|+.+.|++.|.++|.+.|..++               +|+|+++.+...|+.++|+.+++
T Consensus        37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS---------------ayNNRAQa~RLq~~~e~ALdDLn  101 (175)
T KOG4555|consen   37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERAS---------------AYNNRAQALRLQGDDEEALDDLN  101 (175)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchH---------------hhccHHHHHHHcCChHHHHHHHH
Confidence            345666777888999999999999999999999999988655               79999999999999999999999


Q ss_pred             HHhhhCCCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 028390          134 KVLELEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDP  174 (209)
Q Consensus       134 ~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p  174 (209)
                      +++++-.+.    ..++..+|..|..+|+-+.|..+|+.+-++-.
T Consensus       102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            999985443    56799999999999999999999999988753

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.14  E-value=1.2e-09  Score=98.35  Aligned_cols=127  Identities=18%  Similarity=0.151  Sum_probs=93.9

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .+...|..+...|++++|+..|.+++...|.+               ..++.+++.++...|+ .+|+..+.+++...|+
T Consensus       772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~  835 (899)
T TIGR02917       772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPDN---------------AVVLNNLAWLYLELKD-PRALEYAEKALKLAPN  835 (899)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence            34555666666677777777777776665443               3367788888888888 7788888888888888


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                      ++..+..+|.++...|++++|...|+++++++|.++.+...+..+....+...+. ...+.+|.
T Consensus       836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~  898 (899)
T TIGR02917       836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA-RKELDKLL  898 (899)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH-HHHHHHHh
Confidence            8888888888888888888888888888888888888888888877777666554 33555554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.14  E-value=8.4e-09  Score=78.15  Aligned_cols=126  Identities=22%  Similarity=0.192  Sum_probs=99.6

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...|..++..|+|.+|+..|.+.+...|..+-            ...+.+.+|.++++.|+|+.|+..+++.+..
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------------APQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3567889999999999999999999999999887654            3567899999999999999999999999999


Q ss_pred             CCCc---hHHHHHHHHHHhccC-----------CHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHHHHH
Q 028390          139 EPLN---VKALYRRSQAHLKTS-----------ELEKAEADIKRALTIDPNNR---VVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       139 ~p~~---~~~~~~~a~~~~~~~-----------~~~~A~~~~~~a~~l~p~~~---~~~~~l~~l~~~~~~~~~~  196 (209)
                      .|.+   ..++|.+|.+++.+.           ...+|+..|+..+...|+++   .+...+..|..++.+.+-.
T Consensus        72 yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~  146 (203)
T PF13525_consen   72 YPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY  146 (203)
T ss_dssp             -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9887   468999999987764           34589999999999999984   5566666777666555443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.13  E-value=2.9e-09  Score=74.92  Aligned_cols=112  Identities=20%  Similarity=0.206  Sum_probs=97.4

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ...+...|...+++|+|..|++.|.......|..+-            ...+.+.++-+|++.++|++|+..+++-++++
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y------------a~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY------------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            456778999999999999999999998887765443            34678999999999999999999999999999


Q ss_pred             CCch---HHHHHHHHHHhccCC---------------HHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390          140 PLNV---KALYRRSQAHLKTSE---------------LEKAEADIKRALTIDPNNRVVKLVY  183 (209)
Q Consensus       140 p~~~---~~~~~~a~~~~~~~~---------------~~~A~~~~~~a~~l~p~~~~~~~~l  183 (209)
                      |.++   -++|.+|.+++.+..               ...|...|+.++...|+++-+....
T Consensus        78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~  139 (142)
T PF13512_consen   78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADAR  139 (142)
T ss_pred             CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence            9884   579999999999987               8899999999999999987665443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.13  E-value=3.2e-09  Score=82.01  Aligned_cols=126  Identities=12%  Similarity=0.025  Sum_probs=106.6

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh--------cCHHHHHHHH
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--------EDYSETSSLC  132 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~  132 (209)
                      ..+...|..++..|+++.|+..|.++++..|+.+..            ..+++.+|.++...        |++++|+..+
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~  138 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF  138 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence            456788999999999999999999999998876652            23678899999876        8999999999


Q ss_pred             HHHhhhCCCchHHH-----------------HHHHHHHhccCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHH
Q 028390          133 TKVLELEPLNVKAL-----------------YRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVYMELKDKQRE  192 (209)
Q Consensus       133 ~~al~~~p~~~~~~-----------------~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~~l~~~~~~  192 (209)
                      ++++..+|++..++                 +.+|.++...|++.+|+..+.+++...|++   +.++..+..+...+++
T Consensus       139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~  218 (235)
T TIGR03302       139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL  218 (235)
T ss_pred             HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence            99999999985442                 467899999999999999999999997765   5788888888888887


Q ss_pred             HHHHHH
Q 028390          193 YAKYQA  198 (209)
Q Consensus       193 ~~~~~~  198 (209)
                      ..+...
T Consensus       219 ~~~A~~  224 (235)
T TIGR03302       219 KDLAQD  224 (235)
T ss_pred             HHHHHH
Confidence            766543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.12  E-value=2.1e-10  Score=71.23  Aligned_cols=67  Identities=31%  Similarity=0.399  Sum_probs=61.8

Q ss_pred             HhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          120 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       120 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      +..|+|++|+..+.+++..+|++..+++.+|.||...|++++|...+++++..+|+++.+...++.|
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            5789999999999999999999999999999999999999999999999999999998888776654

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.12  E-value=9.5e-11  Score=87.31  Aligned_cols=147  Identities=18%  Similarity=0.113  Sum_probs=121.9

Q ss_pred             cCCCCCCceEEEEEEEcccccCCCCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHH
Q 028390           24 SELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQ  103 (209)
Q Consensus        24 ~~~ip~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~  103 (209)
                      +..+|...++.-+|-+..+.+..-.-+++.+++   |..++++|+.+-..|-+..|...|++++.+.|..+.        
T Consensus        32 ~~~~~~qp~lqqEV~iarlsqlL~~~~l~~eeR---A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~--------  100 (297)
T COG4785          32 VLAVPLQPTLQQEVILARMSQILASRALTDEER---AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE--------  100 (297)
T ss_pred             eeeccCCccHHHHHHHHHHHHHHHhccCChHHH---HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH--------
Confidence            445565556665666666655555556666555   677899999999999999999999999999877654        


Q ss_pred             HHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390          104 ANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY  183 (209)
Q Consensus       104 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  183 (209)
                             +++-+|..+...|+|+.|.+.++.++++||.+.-++.++|.+++..|++.-|..++.+-.+-+|+||--.-.+
T Consensus       101 -------vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL  173 (297)
T COG4785         101 -------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL  173 (297)
T ss_pred             -------HHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence                   7999999999999999999999999999999999999999999999999999999999999999997554444


Q ss_pred             HHHHH
Q 028390          184 MELKD  188 (209)
Q Consensus       184 ~~l~~  188 (209)
                      =.+..
T Consensus       174 Yl~E~  178 (297)
T COG4785         174 YLNEQ  178 (297)
T ss_pred             HHHHh
Confidence            43333

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.12  E-value=1e-08  Score=79.68  Aligned_cols=125  Identities=16%  Similarity=0.156  Sum_probs=102.5

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..++..|+|+.|+..|.+.+...|..+            ....+...+|.+|+++++|++|+..+++.++..
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            45577899999999999999999999999877643            245567899999999999999999999999999


Q ss_pred             CCc---hHHHHHHHHHHhccC---------------C---HHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHH
Q 028390          140 PLN---VKALYRRSQAHLKTS---------------E---LEKAEADIKRALTIDPNN---RVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       140 p~~---~~~~~~~a~~~~~~~---------------~---~~~A~~~~~~a~~l~p~~---~~~~~~l~~l~~~~~~~~~  195 (209)
                      |++   ..++|.+|.++..++               |   ...|+..|+..+...|++   +++...+..|+.++.+.+-
T Consensus       100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~  179 (243)
T PRK10866        100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL  179 (243)
T ss_pred             cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence            887   567999999876654               1   356889999999999987   4666667777777766554


Q ss_pred             H
Q 028390          196 Y  196 (209)
Q Consensus       196 ~  196 (209)
                      .
T Consensus       180 ~  180 (243)
T PRK10866        180 S  180 (243)
T ss_pred             H
Confidence            3

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.11  E-value=4.9e-09  Score=91.52  Aligned_cols=134  Identities=15%  Similarity=0.108  Sum_probs=116.9

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...||.+|..|++++|...+.++|...|..+               .+|.-+|.||-.+|+.++|......|--+
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~---------------~ay~tL~~IyEqrGd~eK~l~~~llAAHL  202 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP---------------IAYYTLGEIYEQRGDIEKALNFWLLAAHL  202 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch---------------hhHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            367788999999999999999999999999877654               37999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM  208 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  208 (209)
                      +|.+...|.+++....++|.+..|.-+|.+|++.+|.+-...-..+.+.++..+...... .|.++|+-+
T Consensus       203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~-~f~~l~~~~  271 (895)
T KOG2076|consen  203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME-TFLQLLQLD  271 (895)
T ss_pred             CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH-HHHHHHhhC
Confidence            999999999999999999999999999999999999998888888888888877765543 777777654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.11  E-value=3.8e-09  Score=81.56  Aligned_cols=114  Identities=17%  Similarity=0.211  Sum_probs=102.5

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      ..++.|..+++.|+|..|...|..-|.-.|...-.            ..+++.+|.+++.+|+|+.|...|..+.+-.|+
T Consensus       143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~  210 (262)
T COG1729         143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK  210 (262)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence            37899999999999999999999999998876542            468999999999999999999999999998877


Q ss_pred             c---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          142 N---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       142 ~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      +   +++++.+|.+...+|+.++|...|.++++-.|+.+.+......++
T Consensus       211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~  259 (262)
T COG1729         211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALK  259 (262)
T ss_pred             CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence            6   678999999999999999999999999999999988877665553

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.10  E-value=3.2e-09  Score=95.50  Aligned_cols=123  Identities=27%  Similarity=0.285  Sum_probs=101.2

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+..+...|..++..|++++|+..|.+++...|....               ++..+|.++...|++++|+..+++++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~la~~~~~~~~~~~A~~~~~~~~~  187 (899)
T TIGR02917       123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY---------------AKLGLAQLALAENRFDEARALIDEVLT  187 (899)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh---------------hHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34566788999999999999999999999998765433               578888888888888888888888888


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      .+|.+..+++.+|.++...|++++|...|++++.++|+++.....+..+.-..++..+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~  245 (899)
T TIGR02917       188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEE  245 (899)
T ss_pred             hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            8888888888888888888888888888888888888888877777776655554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.09  E-value=6.9e-09  Score=85.84  Aligned_cols=84  Identities=23%  Similarity=0.191  Sum_probs=60.9

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-RVVKLVYMELKDK  189 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~l~~~  189 (209)
                      .+.++|.++...|++++|+..+.++++.+|++..+++.+|.++...|++++|+..+++++..+|.+ ..+...+..+...
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~  261 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA  261 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence            456777777788888888888888888888878888888888888888888888888888777765 3444455555544


Q ss_pred             HHHHH
Q 028390          190 QREYA  194 (209)
Q Consensus       190 ~~~~~  194 (209)
                      .++..
T Consensus       262 ~g~~~  266 (389)
T PRK11788        262 LGDEA  266 (389)
T ss_pred             cCCHH
Confidence            44433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.09  E-value=5.9e-09  Score=86.24  Aligned_cols=116  Identities=16%  Similarity=0.087  Sum_probs=80.0

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      +...|..++..|++++|+..|.+++...|..               ..++..+|.++...|++++|+..+.+++..+|.+
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQC---------------VRASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            4556667777788888888888777765442               2356777777777888888888888877777765


Q ss_pred             -hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390          143 -VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  194 (209)
Q Consensus       143 -~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~  194 (209)
                       ..++..++.+|...|++++|...++++++..|++... ..+..+....++..
T Consensus       248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~  299 (389)
T PRK11788        248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPE  299 (389)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHH
Confidence             3456677777777788888888887777777766444 45555554444443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.08  E-value=6.4e-09  Score=97.24  Aligned_cols=127  Identities=17%  Similarity=0.166  Sum_probs=100.7

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHH-HHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEK-HQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      ...+...|..++..|++++|+..|.+++...|.....  ..+ ..+......+...+|.++...|++++|+..|.+++.+
T Consensus       303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~--~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~  380 (1157)
T PRK11447        303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR--DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV  380 (1157)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch--hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4456677888888888888888888888776654321  001 1111122334466788999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      +|.+..+++.+|.++...|++++|+..|+++++++|++..+...+..+..
T Consensus       381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR  430 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988887777653

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.06  E-value=3.5e-09  Score=99.00  Aligned_cols=125  Identities=18%  Similarity=0.197  Sum_probs=107.8

Q ss_pred             HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH
Q 028390           65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK  144 (209)
Q Consensus        65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  144 (209)
                      ..|..++..|++++|+..|.+++...|.++               .++..+|.++..+|++++|+..+.++++.+|++..
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~---------------~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~  338 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDS---------------EALGALGQAYSQQGDRARAVAQFEKALALDPHSSN  338 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence            458899999999999999999999877654               47999999999999999999999999999998643


Q ss_pred             --------------HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          145 --------------ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       145 --------------~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                                    ....+|.++...|++++|+..|++++.++|++..+...+..+....++..+... .|.+.+
T Consensus       339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~-~y~~aL  412 (1157)
T PRK11447        339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAER-YYQQAL  412 (1157)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Confidence                          224568899999999999999999999999999999999999988877776644 455543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=1.7e-09  Score=84.18  Aligned_cols=93  Identities=26%  Similarity=0.245  Sum_probs=86.1

Q ss_pred             HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      +-+-|.-.++.++|.+|+..|++||.++|.++-.|++||.+|.++|.++.|+++++.++.+||....++..|..++-.+.
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            45667888899999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHhhh
Q 028390          192 EYAKYQAEIFGTML  205 (209)
Q Consensus       192 ~~~~~~~~~~~~~~  205 (209)
                      ++...... |+|.+
T Consensus       164 k~~~A~~a-ykKaL  176 (304)
T KOG0553|consen  164 KYEEAIEA-YKKAL  176 (304)
T ss_pred             cHHHHHHH-HHhhh
Confidence            88887765 77764

>PLN02789 farnesyltranstransferase

Probab=99.05  E-value=6.5e-09  Score=83.86  Aligned_cols=115  Identities=13%  Similarity=-0.052  Sum_probs=88.1

Q ss_pred             HHHHHHhHHHHHcC-CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCH--HHHHHHHHHHhh
Q 028390           61 ERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY--SETSSLCTKVLE  137 (209)
Q Consensus        61 ~~~~~~g~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~  137 (209)
                      ..+..+|..+...| ++.+|+..+.+++...|...               .+|+.++.+..+++..  ++++..+.++++
T Consensus        72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny---------------qaW~~R~~~l~~l~~~~~~~el~~~~kal~  136 (320)
T PLN02789         72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY---------------QIWHHRRWLAEKLGPDAANKELEFTRKILS  136 (320)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch---------------HHhHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence            34555555555555 45666666666666555433               3688888888888764  678888889999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      .+|.|..+|..++.++..+|++++|+.++.++++.+|.|..++.....+...+
T Consensus       137 ~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        137 LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999988888887775443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.04  E-value=4.6e-09  Score=94.31  Aligned_cols=113  Identities=9%  Similarity=0.021  Sum_probs=103.2

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..+...|++.+|+..|.+++...|..+.               ++..++.++...|++++|+..+.+++..+
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~---------------a~~~la~~l~~~g~~~eA~~~l~~~l~~~  113 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD---------------YQRGLILTLADAGQYDEALVKAKQLVSGA  113 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            344778899999999999999999999998776543               67899999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      |++.. ++.+|.++...|++++|+..++++++++|+++.+...+..+..
T Consensus       114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~  161 (765)
T PRK10049        114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR  161 (765)
T ss_pred             CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999 9999999999999999999999999999999999888777654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.01  E-value=8e-09  Score=73.93  Aligned_cols=95  Identities=9%  Similarity=0.053  Sum_probs=84.2

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      ....+.+|..+...|++++|...+..+..+||.+...|+++|.|+..+|++++|+..|.+++.++|+|+.....+..|.=
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            34578888999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHHHHHhh
Q 028390          189 KQREYAKYQAEIFGTM  204 (209)
Q Consensus       189 ~~~~~~~~~~~~~~~~  204 (209)
                      .+++.... +..|+..
T Consensus       115 ~lG~~~~A-~~aF~~A  129 (157)
T PRK15363        115 ACDNVCYA-IKALKAV  129 (157)
T ss_pred             HcCCHHHH-HHHHHHH
Confidence            77766644 3345443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=8.4e-09  Score=83.39  Aligned_cols=134  Identities=17%  Similarity=0.184  Sum_probs=112.0

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..++-+|..++..++.+.|+.+|+++|.+.|+...   ....-...-....+...|.-.++.|.|..|.+.|..+|.++
T Consensus       203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~---sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id  279 (486)
T KOG0550|consen  203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQK---SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID  279 (486)
T ss_pred             hHHHHhcccccccccchHHHHHHHhhhhccChhhhh---HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence            566788999999999999999999999999776432   11122223344567889999999999999999999999999


Q ss_pred             CCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          140 PLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       140 p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      |++    .+.|+++|.+...+|+..+|+.+.+.+++++|.-..+....+.|.-.+++.+..
T Consensus       280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~A  340 (486)
T KOG0550|consen  280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEA  340 (486)
T ss_pred             ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            987    567999999999999999999999999999999888888888887777766544

>PLN02789 farnesyltranstransferase

Probab=98.98  E-value=1.8e-08  Score=81.34  Aligned_cols=120  Identities=15%  Similarity=0.070  Sum_probs=104.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-CHHHHHHHHHHHhhhCCCchHHHHH
Q 028390           70 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLELEPLNVKALYR  148 (209)
Q Consensus        70 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~  148 (209)
                      +...+.+++|+..+.++|.+.|...               .+|+.++.++..++ .+++++..+++++..+|.+..+|+.
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~y---------------taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~  111 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNY---------------TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH  111 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence            4567899999999999999987754               47999999999998 6899999999999999999999999


Q ss_pred             HHHHHhccCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          149 RSQAHLKTSEL--EKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       149 ~a~~~~~~~~~--~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                      ++.++..+++.  ++++.++.++++++|.|..++.....+...++...+ +-..|.+++
T Consensus       112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e-eL~~~~~~I  169 (320)
T PLN02789        112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED-ELEYCHQLL  169 (320)
T ss_pred             HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH-HHHHHHHHH
Confidence            99999999974  788999999999999999999999999988877654 344555554

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.97  E-value=8.4e-10  Score=87.17  Aligned_cols=124  Identities=19%  Similarity=0.185  Sum_probs=106.7

Q ss_pred             CHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHH
Q 028390           52 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL  131 (209)
Q Consensus        52 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~  131 (209)
                      ..++....+...+-.+..++..|.++.|+..|+.+|.+.|..               ..+|.+++.++++++++..|+.+
T Consensus       106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~---------------a~l~~kr~sv~lkl~kp~~airD  170 (377)
T KOG1308|consen  106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPL---------------AILYAKRASVFLKLKKPNAAIRD  170 (377)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCch---------------hhhcccccceeeeccCCchhhhh
Confidence            556778889999999999999999999999999999987664               45799999999999999999999


Q ss_pred             HHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          132 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       132 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      |..++.++|+..+.|-.++.+...+|+|++|..++..+.+++=+ +.+...+..+....+
T Consensus       171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~  229 (377)
T KOG1308|consen  171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNAG  229 (377)
T ss_pred             hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccchh
Confidence            99999999999999999999999999999999999999998642 333344444444333

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.96  E-value=2e-08  Score=64.75  Aligned_cols=86  Identities=31%  Similarity=0.354  Sum_probs=78.9

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      ++.++|.++...|++++|+..+.++++..|.+..+++.+|.++...+++++|...+.+++.+.|.+......+..+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999998888888888777


Q ss_pred             HHHHHH
Q 028390          191 REYAKY  196 (209)
Q Consensus       191 ~~~~~~  196 (209)
                      ......
T Consensus        82 ~~~~~a   87 (100)
T cd00189          82 GKYEEA   87 (100)
T ss_pred             HhHHHH
Confidence            665544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.96  E-value=1.9e-08  Score=90.39  Aligned_cols=107  Identities=11%  Similarity=0.024  Sum_probs=98.4

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP  140 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  140 (209)
                      ......|..+...|++++|+..+.+++...|...               .++.++|.++...|++++|+..+++++.++|
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~---------------~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P  424 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ---------------GLRIDYASVLQARGWPRAAENELKKAEVLEP  424 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence            3445788889999999999999999999877754               4899999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 028390          141 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLV  182 (209)
Q Consensus       141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~  182 (209)
                      ++..+++.+|.++..+|++++|...++++++..|+++.+...
T Consensus       425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~  466 (765)
T PRK10049        425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL  466 (765)
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            999999999999999999999999999999999999987653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.95  E-value=1.5e-09  Score=66.80  Aligned_cols=64  Identities=22%  Similarity=0.240  Sum_probs=57.1

Q ss_pred             HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCch
Q 028390           65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV  143 (209)
Q Consensus        65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  143 (209)
                      ..|..++..|+|++|+..|.+++...|..               ..++..+|.|+..+|++++|+..+++++..+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDN---------------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTH---------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            57999999999999999999999987653               45899999999999999999999999999999875

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.92  E-value=4.2e-08  Score=86.50  Aligned_cols=117  Identities=10%  Similarity=-0.042  Sum_probs=100.6

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+......+..+.+.+++++|+..+.+++...|+..               .+++.+|.++..+|++++|+..|++++.
T Consensus       118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~---------------~~~~~~a~~l~~~g~~~~A~~~y~~~~~  182 (694)
T PRK15179        118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA---------------REILLEAKSWDEIGQSEQADACFERLSR  182 (694)
T ss_pred             CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH---------------HHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            3456678899999999999999999999999877754               4799999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN-NRVVKLVYMELKDK  189 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~l~~~  189 (209)
                      .+|++..++..+|.++...|+.++|...|++++....+ .....+.+..+...
T Consensus       183 ~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  235 (694)
T PRK15179        183 QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNAD  235 (694)
T ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998654 33334444444433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.90  E-value=5e-09  Score=66.84  Aligned_cols=66  Identities=21%  Similarity=0.223  Sum_probs=57.2

Q ss_pred             HHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh----CCC---chHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          107 LRLSCYLNNAACKLKLEDYSETSSLCTKVLEL----EPL---NVKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       107 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                      ....++.++|.+|..+|+|++|+..+++++++    +++   ...+++++|.++..+|++++|+.++++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45678999999999999999999999999966    222   3668999999999999999999999999875

...

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.89  E-value=5.6e-09  Score=85.58  Aligned_cols=121  Identities=16%  Similarity=0.140  Sum_probs=106.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+.+.|+..|..|++++|.+.|.+|+.-+...               ..+++|+|..+-.+|+.++|+..+.+.-.+-
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc---------------~ealfniglt~e~~~~ldeald~f~klh~il  554 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASC---------------TEALFNIGLTAEALGNLDEALDCFLKLHAIL  554 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH---------------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence            4556788999999999999999999999753332               4578999999999999999999999988888


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      -++..+++.++.+|..+.+...|+..+-++.++-|+++.++..|..++.+-....+
T Consensus       555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksq  610 (840)
T KOG2003|consen  555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQ  610 (840)
T ss_pred             HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhh
Confidence            88999999999999999999999999999999999999999999999887655444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.89  E-value=1.7e-08  Score=86.96  Aligned_cols=104  Identities=22%  Similarity=0.199  Sum_probs=82.5

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHH--HHHHHh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS--LCTKVL  136 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al  136 (209)
                      .+..++..|..+..+|.+.+|...|..|+.++|++..               ....+|.++...|+..-|..  .+..++
T Consensus       683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~---------------s~~Ala~~lle~G~~~la~~~~~L~dal  747 (799)
T KOG4162|consen  683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP---------------SMTALAELLLELGSPRLAEKRSLLSDAL  747 (799)
T ss_pred             hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH---------------HHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence            3455677788888888888888888888888777654               46788888888887776666  888888


Q ss_pred             hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390          137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  177 (209)
Q Consensus       137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~  177 (209)
                      ++||.++++||.+|.++..+|+.+.|..+|.-++++++.+|
T Consensus       748 r~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  748 RLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             hhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            88888888888888888888888888888888888877765

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.88  E-value=1.7e-08  Score=74.14  Aligned_cols=112  Identities=14%  Similarity=0.010  Sum_probs=88.1

Q ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---h
Q 028390           67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---V  143 (209)
Q Consensus        67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~  143 (209)
                      .+.+|-.+.|..+...+...+...+.             .....+++++|.++..+|++++|+..+.+++.+.|+.   .
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~   72 (168)
T CHL00033          6 RNDNFIDKTFTIVADILLRILPTTSG-------------EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRS   72 (168)
T ss_pred             ccccccccccccchhhhhHhccCCch-------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhH
Confidence            34444455566666666444332222             2246689999999999999999999999999887663   4


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      .+++++|.++...|++++|+..+++++.++|.+......+..+...+.
T Consensus        73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            589999999999999999999999999999999998888888887443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.88  E-value=8e-08  Score=79.29  Aligned_cols=125  Identities=17%  Similarity=0.033  Sum_probs=111.0

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .....+..+...+..|+++.|+..++..+...|+++               .+....+.+++..++.++|++.+.+++.+
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~---------------~~~~~~~~i~~~~nk~~~A~e~~~kal~l  369 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP---------------YYLELAGDILLEANKAKEAIERLKKALAL  369 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            344567788888999999999999999888766543               46788999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA  198 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~  198 (209)
                      +|+..-..+++|.+|.+.|++.+|+..++..+.-+|+|+..+..|++.+..+....+...
T Consensus       370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~  429 (484)
T COG4783         370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL  429 (484)
T ss_pred             CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence            999999999999999999999999999999999999999999999999998877665443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.87  E-value=5.6e-08  Score=85.72  Aligned_cols=118  Identities=19%  Similarity=0.155  Sum_probs=103.5

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .+.-.++.+|-+|+|..+...+..++.....            .......++.+|.+|..+|+|++|..+|..++..+|+
T Consensus       272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d  339 (1018)
T KOG2002|consen  272 ALNHLANHFYFKKDYERVWHLAEHAIKNTEN------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND  339 (1018)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHHhhhh------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC
Confidence            3556677888888888888888888875422            2334567999999999999999999999999999999


Q ss_pred             c-hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          142 N-VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       142 ~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      + .-+++.+|+.|++.|+++.|..+|+++++..|++.+....+..++....
T Consensus       340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            8 8889999999999999999999999999999999999999999998773

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.87  E-value=3.4e-08  Score=81.11  Aligned_cols=91  Identities=24%  Similarity=0.302  Sum_probs=82.5

Q ss_pred             HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      +...|...+..|+|++|+..|.+++.++|++..+++.+|.+|..+|++++|+.++++++.++|+++.+...+..+...++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHh
Q 028390          192 EYAKYQAEIFGT  203 (209)
Q Consensus       192 ~~~~~~~~~~~~  203 (209)
                      ++..... .|.+
T Consensus        85 ~~~eA~~-~~~~   95 (356)
T PLN03088         85 EYQTAKA-ALEK   95 (356)
T ss_pred             CHHHHHH-HHHH
Confidence            8776544 4443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.85  E-value=7.8e-08  Score=68.90  Aligned_cols=122  Identities=17%  Similarity=0.117  Sum_probs=61.4

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +...+......+..+++..+...+...+.-.|..+            ....+.+.+|.+++..|++++|+..+..++...
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------------ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~   78 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------------YAALAALQLAKAAYEQGDYDEAKAALEKALANA   78 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence            44444555555555555555555555555433321            123345555555555666666666666555554


Q ss_pred             CCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390          140 PLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  194 (209)
Q Consensus       140 p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~  194 (209)
                      |+.   ..+.+++|.++...|++++|+..+..+ .-.+-.+.+...+..|....++..
T Consensus        79 ~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~  135 (145)
T PF09976_consen   79 PDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYD  135 (145)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHH
Confidence            332   334555556666666666665555432 122223444455555555444444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.84  E-value=3.8e-08  Score=75.30  Aligned_cols=119  Identities=13%  Similarity=0.106  Sum_probs=95.3

Q ss_pred             HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH
Q 028390           65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK  144 (209)
Q Consensus        65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  144 (209)
                      .....++..|+-+.+.....++....+.+.               .+....|...+..|+|..|+..+.++..+.|+++.
T Consensus        71 ~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~---------------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~  135 (257)
T COG5010          71 KLATALYLRGDADSSLAVLQKSAIAYPKDR---------------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE  135 (257)
T ss_pred             HHHHHHHhcccccchHHHHhhhhccCcccH---------------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh
Confidence            344555555666666666555544433322               24555899999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028390          145 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA  198 (209)
Q Consensus       145 ~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~  198 (209)
                      +|..+|.+|.+.|+++.|...|.+++++.|+++.+..++.-..-.-.+++..++
T Consensus       136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~  189 (257)
T COG5010         136 AWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET  189 (257)
T ss_pred             hhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999999999887766666655544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.84  E-value=9.7e-08  Score=65.94  Aligned_cols=98  Identities=18%  Similarity=-0.005  Sum_probs=85.3

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      ..++.|..+-..|+.++|+..|.+++......            .....++..+|.++..+|++++|+..++.++...|+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG------------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            46788999999999999999999999853222            234568999999999999999999999999998888


Q ss_pred             ---chHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          142 ---NVKALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       142 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                         +......++.++...|+.++|+..+-.++.
T Consensus        71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   71 DELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               778888899999999999999999977764

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.83  E-value=3.7e-08  Score=62.79  Aligned_cols=73  Identities=23%  Similarity=0.259  Sum_probs=61.8

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+..+...|..++..|+|++|+..|.+++.+....+..        ....+.++.++|.|+..+|++++|+..++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--------HPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            457788999999999999999999999999985444331        234578899999999999999999999999987


Q ss_pred             h
Q 028390          138 L  138 (209)
Q Consensus       138 ~  138 (209)
                      +
T Consensus        75 i   75 (78)
T PF13424_consen   75 I   75 (78)
T ss_dssp             H
T ss_pred             h
Confidence            6

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.83  E-value=7.5e-08  Score=65.91  Aligned_cols=87  Identities=17%  Similarity=0.137  Sum_probs=75.8

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVY  183 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l  183 (209)
                      ..++..|..+...|++++|+..+..++..+|++   ..+++.+|.++...|+++.|+..|+.++..+|++   +.+...+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            368999999999999999999999999999876   5789999999999999999999999999999886   5667777


Q ss_pred             HHHHHHHHHHHHH
Q 028390          184 MELKDKQREYAKY  196 (209)
Q Consensus       184 ~~l~~~~~~~~~~  196 (209)
                      ..+....+...+.
T Consensus        83 ~~~~~~~~~~~~A   95 (119)
T TIGR02795        83 GMSLQELGDKEKA   95 (119)
T ss_pred             HHHHHHhCChHHH
Confidence            7777766655544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.82  E-value=1.4e-07  Score=84.73  Aligned_cols=144  Identities=9%  Similarity=0.031  Sum_probs=87.7

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC-----------hHHH--HHH----H--HHHHHHHhHHHHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT-----------DDEK--HQA----N--GLRLSCYLNNAACKL  120 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~-----------~~~~--~~~----~--~~~~~~~~~~a~~~~  120 (209)
                      +...+..+...++.|++..|+..|.++++..|..+..-           ..+.  .-+    +  +........+|.++.
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~  113 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR  113 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            33567899999999999999999999999888764210           0000  000    0  111122333355666


Q ss_pred             hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028390          121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEI  200 (209)
Q Consensus       121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~  200 (209)
                      .+|+|++|+..|+++++.+|+++.+++.++.++...++.++|+..++++...+|.+... ..+..+........+ .-..
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~-AL~~  191 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD-ALQA  191 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH-HHHH
Confidence            67777777777777777777777777766777777777777777777777777765544 334444433222222 3344


Q ss_pred             HHhhh
Q 028390          201 FGTML  205 (209)
Q Consensus       201 ~~~~~  205 (209)
                      |++++
T Consensus       192 ~ekll  196 (822)
T PRK14574        192 SSEAV  196 (822)
T ss_pred             HHHHH
Confidence            54444

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.81  E-value=1.3e-08  Score=63.01  Aligned_cols=67  Identities=28%  Similarity=0.294  Sum_probs=58.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHH
Q 028390           70 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRR  149 (209)
Q Consensus        70 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  149 (209)
                      ++..|+|++|+..|.+++...|.+.               .++..+|.|++..|++++|...+.+++..+|+++..+.-+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~---------------~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNP---------------EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSH---------------HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            4678999999999999999988754               4789999999999999999999999999999988777666


Q ss_pred             HH
Q 028390          150 SQ  151 (209)
Q Consensus       150 a~  151 (209)
                      +.
T Consensus        66 a~   67 (68)
T PF14559_consen   66 AQ   67 (68)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.81  E-value=4.5e-08  Score=61.48  Aligned_cols=70  Identities=23%  Similarity=0.292  Sum_probs=62.7

Q ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHH
Q 028390           67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL  146 (209)
Q Consensus        67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  146 (209)
                      ...++..++|+.|+..+..++.+.|.++.               ++..+|.|+..+|+|.+|+..++++++.+|+++.+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---------------~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPE---------------LWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccch---------------hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            45788999999999999999999888665               699999999999999999999999999999998876


Q ss_pred             HHHHH
Q 028390          147 YRRSQ  151 (209)
Q Consensus       147 ~~~a~  151 (209)
                      .-++.
T Consensus        67 ~~~a~   71 (73)
T PF13371_consen   67 ALRAM   71 (73)
T ss_pred             HHHHh
Confidence            65553

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.80  E-value=8.7e-08  Score=70.66  Aligned_cols=85  Identities=19%  Similarity=0.168  Sum_probs=76.0

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  184 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  184 (209)
                      ...+++++|.++...|++++|+..+.+++...|+.   ..+++.+|.++..+|++++|+..+.+++.+.|.+......+.
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  113 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA  113 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            46689999999999999999999999999887653   468999999999999999999999999999999998888888


Q ss_pred             HHHHHHHH
Q 028390          185 ELKDKQRE  192 (209)
Q Consensus       185 ~l~~~~~~  192 (209)
                      .+...+.+
T Consensus       114 ~~~~~~g~  121 (172)
T PRK02603        114 VIYHKRGE  121 (172)
T ss_pred             HHHHHcCC
Confidence            87766544

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=7.1e-09  Score=66.43  Aligned_cols=42  Identities=24%  Similarity=0.391  Sum_probs=39.8

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDF   42 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~   42 (209)
                      .+|-+||.+.++|.|.| ||.-|-+..||||+.|.|+|+|+.+
T Consensus        65 ~qmsvGekakLti~pd~aYG~~G~p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   65 AQMSVGEKAKLTISPDYAYGPRGHPGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             hhccccccceeeeccccccCCCCCCCccCCCcEEEEEEEEEec
Confidence            47999999999999999 9999999999999999999999876

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.77  E-value=3.6e-08  Score=81.36  Aligned_cols=67  Identities=19%  Similarity=0.132  Sum_probs=62.8

Q ss_pred             HHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHH---HHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390          107 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA---LYRRSQAHLKTSELEKAEADIKRALTID  173 (209)
Q Consensus       107 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~a~~l~  173 (209)
                      ....+++|+|.+++.+|+|++|+..|+++++++|++..+   ||++|-||..+|++++|+.++++++++.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            346789999999999999999999999999999999855   9999999999999999999999999973

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=2.7e-07  Score=72.23  Aligned_cols=113  Identities=18%  Similarity=0.162  Sum_probs=96.4

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh---cCHHHHHHHHHHH
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL---EDYSETSSLCTKV  135 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~a  135 (209)
                      .++.+.-.|..++..|++..|...|.+|+++.|+.+.               ++...|.++...   ....++...+.++
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~---------------~~~g~aeaL~~~a~~~~ta~a~~ll~~a  219 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE---------------ILLGLAEALYYQAGQQMTAKARALLRQA  219 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            3666889999999999999999999999999887654               566777766654   3567889999999


Q ss_pred             hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      +..||.++.+.+.+|..++..|+|.+|...++..+.+.|.+..-...+.+.
T Consensus       220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~  270 (287)
T COG4235         220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS  270 (287)
T ss_pred             HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            999999999999999999999999999999999999988776555544443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.75  E-value=4.1e-07  Score=77.20  Aligned_cols=140  Identities=21%  Similarity=0.183  Sum_probs=108.4

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +......|..+...++|.+|+..|.+|+.+........       .+-.+.++.|+|..|.+.|+|++|..+|++|+++-
T Consensus       241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence            44455689999999999999999999999876422111       13356789999999999999999999999999762


Q ss_pred             --------CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028390          140 --------PLNVKALYRRSQAHLKTSELEKAEADIKRALTID-----PNN---RVVKLVYMELKDKQREYAKYQAEIFGT  203 (209)
Q Consensus       140 --------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~-----p~~---~~~~~~l~~l~~~~~~~~~~~~~~~~~  203 (209)
                              |.-...+...+.++..++++++|+.++.+++++.     ++|   +.+...++.++....++++.+. .|++
T Consensus       314 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~-~~k~  392 (508)
T KOG1840|consen  314 EKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE-LYKK  392 (508)
T ss_pred             HHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH-HHHH
Confidence                    3335678889999999999999999999988762     334   5666778888888888877644 6666


Q ss_pred             hhhc
Q 028390          204 MLSK  207 (209)
Q Consensus       204 ~~~~  207 (209)
                      .+++
T Consensus       393 ai~~  396 (508)
T KOG1840|consen  393 AIQI  396 (508)
T ss_pred             HHHH
Confidence            5543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.75  E-value=8.7e-08  Score=76.07  Aligned_cols=119  Identities=19%  Similarity=0.167  Sum_probs=79.0

Q ss_pred             HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH
Q 028390           65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK  144 (209)
Q Consensus        65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  144 (209)
                      .....+...++++.+...+..+....+..             ....+|..+|.++.+.|++++|+..+.++++.+|++..
T Consensus       115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~  181 (280)
T PF13429_consen  115 SALQLYYRLGDYDEAEELLEKLEELPAAP-------------DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD  181 (280)
T ss_dssp             ---H-HHHTT-HHHHHHHHHHHHH-T----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhccCCC-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            34444555566666665555544321111             12456788888888888888888888888888888888


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          145 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       145 ~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      +...++.++...|+++++...++......|.|+..+..+..+...++...+.
T Consensus       182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A  233 (280)
T PF13429_consen  182 ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA  233 (280)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence            8888888888888888888888777777787877777788777777665543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.75  E-value=2.2e-07  Score=82.06  Aligned_cols=133  Identities=18%  Similarity=0.164  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      .-.++.++..|..+...|+|++|..+|.+++...++....              .+..+|+.|+..|+++.|+..+++++
T Consensus       304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l--------------~~~GlgQm~i~~~dle~s~~~fEkv~  369 (1018)
T KOG2002|consen  304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL--------------PLVGLGQMYIKRGDLEESKFCFEKVL  369 (1018)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc--------------cccchhHHHHHhchHHHHHHHHHHHH
Confidence            3457789999999999999999999999999987765433              48999999999999999999999999


Q ss_pred             hhCCCchHHHHHHHHHHhccC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          137 ELEPLNVKALYRRSQAHLKTS----ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       137 ~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                      ...|++...+.-+|..|...+    ..+.|...+.++++..|.|..++-.++.+.+.......  -..|.+..
T Consensus       370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s--L~~~~~A~  440 (1018)
T KOG2002|consen  370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS--LDAYGNAL  440 (1018)
T ss_pred             HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH--HHHHHHHH
Confidence            999999999999999999886    67889999999999999999999999998876544332  44454443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.73  E-value=6.3e-08  Score=83.19  Aligned_cols=129  Identities=18%  Similarity=0.230  Sum_probs=112.3

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP  140 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  140 (209)
                      .+.+..|...+..++|.+|..+++.++++.|-..               ..|+++|-|.++++++..|..+|.+++.++|
T Consensus       486 rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~---------------~~wf~~G~~ALqlek~q~av~aF~rcvtL~P  550 (777)
T KOG1128|consen  486 RAQRSLALLILSNKDFSEADKHLERSLEINPLQL---------------GTWFGLGCAALQLEKEQAAVKAFHRCVTLEP  550 (777)
T ss_pred             HHHHhhccccccchhHHHHHHHHHHHhhcCccch---------------hHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence            3445556666778999999999999999866543               4699999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          141 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                      ++..+|.+++.+|..+++-.+|...+++|++.+-.+..++.+...+...++...+..+ .|.++.
T Consensus       551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~-A~~rll  614 (777)
T KOG1128|consen  551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK-AYHRLL  614 (777)
T ss_pred             CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH-HHHHHH
Confidence            9999999999999999999999999999999998888999999998888888776644 666553

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.72  E-value=4.9e-07  Score=81.07  Aligned_cols=127  Identities=13%  Similarity=0.034  Sum_probs=102.5

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ...+......+...+++++|+.....++...|....               +|+.+|.++++.+++..+...  .++..-
T Consensus        31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~---------------~yy~~G~l~~q~~~~~~~~lv--~~l~~~   93 (906)
T PRK14720         31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS---------------ALYISGILSLSRRPLNDSNLL--NLIDSF   93 (906)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee---------------hHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence            445567777888999999999999999999888766               578888888888887777665  666555


Q ss_pred             CCch-------------------HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028390          140 PLNV-------------------KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEI  200 (209)
Q Consensus       140 p~~~-------------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~  200 (209)
                      +.+.                   .+++.+|.||.++|++++|...|+++++++|+|+.+.+.++-..... ...+. ...
T Consensus        94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA-~~m  171 (906)
T PRK14720         94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA-ITY  171 (906)
T ss_pred             ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH-HHH
Confidence            5544                   89999999999999999999999999999999999999999888777 44433 445


Q ss_pred             HHhhh
Q 028390          201 FGTML  205 (209)
Q Consensus       201 ~~~~~  205 (209)
                      +++.+
T Consensus       172 ~~KAV  176 (906)
T PRK14720        172 LKKAI  176 (906)
T ss_pred             HHHHH
Confidence            55544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=8.9e-08  Score=75.73  Aligned_cols=134  Identities=12%  Similarity=0.062  Sum_probs=98.7

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC---------C---ChHHH-------HHHHHHHHHHHhHHHHHHHhhc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS---------F---TDDEK-------HQANGLRLSCYLNNAACKLKLE  123 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~---------~---~~~~~-------~~~~~~~~~~~~~~a~~~~~~~  123 (209)
                      +...+..+-..+++++|+++|..+++..+....         +   .++..       -++......++.|+|.|.+--+
T Consensus       293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq  372 (478)
T KOG1129|consen  293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ  372 (478)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence            334555555556666666666666655443211         0   01111       1122223458999999999999


Q ss_pred             CHHHHHHHHHHHhhhCC---CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          124 DYSETSSLCTKVLELEP---LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       124 ~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      +++-++..+++++..-.   .-.+.||++|.+....||+.-|...|+-++.-+|++.++.+.|..+..+.......
T Consensus       373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A  448 (478)
T KOG1129|consen  373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA  448 (478)
T ss_pred             chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence            99999999999997633   34789999999999999999999999999999999999999999998877666543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.71  E-value=5.7e-07  Score=71.01  Aligned_cols=140  Identities=18%  Similarity=0.113  Sum_probs=113.9

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC-------------hHHHHH---------------HHHHHH
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT-------------DDEKHQ---------------ANGLRL  109 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~-------------~~~~~~---------------~~~~~~  109 (209)
                      +....+...|..|...|-++.|...|...+..    +.+.             ..+|++               ..-..+
T Consensus       105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de----~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA  180 (389)
T COG2956         105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE----GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA  180 (389)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc----hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH
Confidence            34567788899999999999998888876652    1111             012211               234456


Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHH
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-RVVKLVYMELKD  188 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~l~~  188 (209)
                      ..|..+|..+....+.+.|+..+.++++.+|.++.+-.-+|.+....|+|+.|+..++.+++-+|+- +++...|..++.
T Consensus       181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~  260 (389)
T COG2956         181 QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYA  260 (389)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999999999999999999999999999986 789999999999


Q ss_pred             HHHHHHHHHHHHH
Q 028390          189 KQREYAKYQAEIF  201 (209)
Q Consensus       189 ~~~~~~~~~~~~~  201 (209)
                      .+.+........-
T Consensus       261 ~lg~~~~~~~fL~  273 (389)
T COG2956         261 QLGKPAEGLNFLR  273 (389)
T ss_pred             HhCCHHHHHHHHH
Confidence            9988776655443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.70  E-value=8.9e-07  Score=75.20  Aligned_cols=131  Identities=19%  Similarity=0.163  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ...+..+.+.|..+++.|+|++|..++..|+.+.......       ..+.....+.+++.++..++++++|+..+.+++
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~-------~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al  352 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA-------SHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL  352 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc-------ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            3457778999999999999999999999999998762211       123356678999999999999999999999998


Q ss_pred             hh-----CC---CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHHHHHHH
Q 028390          137 EL-----EP---LNVKALYRRSQAHLKTSELEKAEADIKRALTID-----PNN---RVVKLVYMELKDKQREYA  194 (209)
Q Consensus       137 ~~-----~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~-----p~~---~~~~~~l~~l~~~~~~~~  194 (209)
                      .+     .+   .-.+.+.++|.+|..+|++.+|...+++|++..     ..+   ......++....+.+.+.
T Consensus       353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~  426 (508)
T KOG1840|consen  353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE  426 (508)
T ss_pred             HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence            65     23   337789999999999999999999999999874     112   334444555555554444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.69  E-value=4.2e-07  Score=75.11  Aligned_cols=108  Identities=18%  Similarity=0.081  Sum_probs=89.4

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      .--.|..++..++..+|.+.+.+++.++|..+.               +..++|..+++.|++.+|+..++..+..+|++
T Consensus       343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~---------------l~~~~a~all~~g~~~eai~~L~~~~~~~p~d  407 (484)
T COG4783         343 LELAGDILLEANKAKEAIERLKKALALDPNSPL---------------LQLNLAQALLKGGKPQEAIRILNRYLFNDPED  407 (484)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH---------------HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence            345788889999999999999999999887643               78999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028390          143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  185 (209)
Q Consensus       143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  185 (209)
                      +..|..+|.+|..+|+-.+|...+-....+...-..+...+.+
T Consensus       408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~  450 (484)
T COG4783         408 PNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMR  450 (484)
T ss_pred             chHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            9999999999998888777777666666665544444443333

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.67  E-value=3e-06  Score=60.69  Aligned_cols=98  Identities=19%  Similarity=0.142  Sum_probs=81.8

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      .......|..++..|++++|+..|..++...++.            .+...+..++|.+++..|+|++|+..+..+ .-.
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~------------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~  114 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDP------------ELKPLARLRLARILLQQGQYDEALATLQQI-PDE  114 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCc
Confidence            4557779999999999999999999999854221            345668899999999999999999999663 334


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRAL  170 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~  170 (209)
                      +-.+.++..+|.+|...|++++|...|++++
T Consensus       115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  115 AFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            4456778889999999999999999999874

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.66  E-value=5e-07  Score=65.81  Aligned_cols=97  Identities=23%  Similarity=0.201  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh----------cCHHHHHHHHHHHhhhCCCchHH
Q 028390           76 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL----------EDYSETSSLCTKVLELEPLNVKA  145 (209)
Q Consensus        76 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~  145 (209)
                      |+.|.+.|.......|.+..               .+++=|.+++.+          ..+++|+.-++.||.++|+...+
T Consensus         7 FE~ark~aea~y~~nP~Dad---------------nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA   71 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDAD---------------NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA   71 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HH---------------HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHHHhCcHhHH---------------HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            46677778777777666532               233333333333          45788999999999999999999


Q ss_pred             HHHHHHHHhccCC-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          146 LYRRSQAHLKTSE-----------LEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       146 ~~~~a~~~~~~~~-----------~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      ++.+|.+|..++.           |++|..+|++|...+|+|...++.|....
T Consensus        72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~  124 (186)
T PF06552_consen   72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA  124 (186)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            9999999998874           78899999999999999999998887764

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.65  E-value=4.7e-07  Score=77.06  Aligned_cols=119  Identities=13%  Similarity=0.026  Sum_probs=108.1

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .++..+..+|..++|...+......+.-+|..+.               ...-.|.....+|+-++|...+..++..|+.
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge---------------slAmkGL~L~~lg~~~ea~~~vr~glr~d~~   73 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE---------------SLAMKGLTLNCLGKKEEAYELVRLGLRNDLK   73 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch---------------hHHhccchhhcccchHHHHHHHHHHhccCcc
Confidence            4567888999999999999999999998777665               4677888889999999999999999999999


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      +.-.|..+|.++....+|++|+.+|+.|+.++|+|..+++-++.++.++++++-
T Consensus        74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~  127 (700)
T KOG1156|consen   74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG  127 (700)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999999999999999998887753

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.61  E-value=1.4e-06  Score=76.63  Aligned_cols=116  Identities=16%  Similarity=0.156  Sum_probs=101.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ...+...|..+-..|+..+|+..+..|-.+.|.+..               .|..++....++|++.+|+-+|++||+.+
T Consensus       173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e---------------~W~~ladls~~~~~i~qA~~cy~rAI~~~  237 (895)
T KOG2076|consen  173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE---------------LWKRLADLSEQLGNINQARYCYSRAIQAN  237 (895)
T ss_pred             hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH---------------HHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            456888899999999999999999999999888765               58999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      |.+++..++++..|.++|+...|...|.+++.++| ..+.....+.+...++
T Consensus       238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~  288 (895)
T KOG2076|consen  238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAH  288 (895)
T ss_pred             CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 3444444444444333

>TIGR00540 hemY_coli hemY protein

Probab=98.60  E-value=1e-06  Score=73.82  Aligned_cols=133  Identities=17%  Similarity=0.002  Sum_probs=105.5

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      ........|..+...|+++.|...+.+++...|++...             ....-+....+..++...++..++++++.
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~-------------~~~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI-------------SLPLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc-------------hhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            45566778899999999999999999999988776531             01122333344568889999999999999


Q ss_pred             CCCch--HHHHHHHHHHhccCCHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390          139 EPLNV--KALYRRSQAHLKTSELEKAEADIK--RALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  206 (209)
Q Consensus       139 ~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~--~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  206 (209)
                      .|+++  ..+..+|.++++.|+|++|..+|+  .+++..|++... ..+..+...+++..+. ...|++-++
T Consensus       329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~-~~La~ll~~~g~~~~A-~~~~~~~l~  398 (409)
T TIGR00540       329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL-AMAADAFDQAGDKAEA-AAMRQDSLG  398 (409)
T ss_pred             CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH-HHHHHHHHHcCCHHHH-HHHHHHHHH
Confidence            99999  888899999999999999999999  577788877664 4999999988886655 556665443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=98.60  E-value=3.9e-06  Score=70.32  Aligned_cols=124  Identities=17%  Similarity=0.166  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      +.+.+......|...+..|+|..|.....++....|...               ..+.-.|.++..+|+++.|..++.++
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~---------------~~~llaA~aa~~~g~~~~A~~~l~~a  144 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV---------------LNLIKAAEAAQQRGDEARANQHLEEA  144 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            344577778899999999999999999999888654422               23556667777777777777777777


Q ss_pred             hhhCCCch-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390          136 LELEPLNV-KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  194 (209)
Q Consensus       136 l~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~  194 (209)
                      .+..|++. .+....+.++...|+++.|...+++..+..|+++.+...+..+.-..++..
T Consensus       145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~  204 (409)
T TIGR00540       145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ  204 (409)
T ss_pred             HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence            77666664 344445777777777777777777777777777777777777666655554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.58  E-value=2.9e-06  Score=72.85  Aligned_cols=118  Identities=13%  Similarity=0.010  Sum_probs=91.1

Q ss_pred             HHHHHHHhHHHHHcCC---HHHHHHHHHHHHHHHhhcCCC--------------C---hHHHHHH------------HHH
Q 028390           60 CERKKHDGNLLFRAGK---YWRASKKYEKAAKIIEFHHSF--------------T---DDEKHQA------------NGL  107 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~---~~~A~~~y~~al~~~~~~~~~--------------~---~~~~~~~------------~~~  107 (209)
                      +-.+.-+|..++..+.   +..|+.+|.+|++++|+....              .   .......            .+.
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~  418 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV  418 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence            3345566777766544   789999999999998874211              0   1111111            111


Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  178 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~  178 (209)
                      ...+|..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            224577888898899999999999999999999 5789999999999999999999999999999999774

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.58  E-value=5.4e-07  Score=71.40  Aligned_cols=100  Identities=18%  Similarity=0.191  Sum_probs=83.1

Q ss_pred             HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCch
Q 028390           64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV  143 (209)
Q Consensus        64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  143 (209)
                      ...|.++++.|.+.+|...++.++...+.                ...+..++.+|...++...|+..+...++..|.++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~----------------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V  290 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH----------------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV  290 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCc----------------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh
Confidence            35789999999999999999999987654                23577788888888888888888888888888888


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 028390          144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV  179 (209)
Q Consensus       144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~  179 (209)
                      ..+...|.++..+++.++|.+.|+.+++++|.|.++
T Consensus       291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEa  326 (478)
T KOG1129|consen  291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEA  326 (478)
T ss_pred             hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcccee
Confidence            888888888888888888888888888888776544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.57  E-value=1.2e-06  Score=72.58  Aligned_cols=73  Identities=19%  Similarity=0.234  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390           55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK  134 (209)
Q Consensus        55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  134 (209)
                      .....+..+.+.|..++..|+|++|+..|++||.+.|++..            ...+|+|+|.||..+|++++|+.++.+
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae------------A~~A~yNLAcaya~LGr~dEAla~Lrr  137 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE------------AQAAYYNKACCHAYREEGKKAADCLRT  137 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34556788999999999999999999999999999887543            114699999999999999999999999


Q ss_pred             HhhhC
Q 028390          135 VLELE  139 (209)
Q Consensus       135 al~~~  139 (209)
                      ++++.
T Consensus       138 ALels  142 (453)
T PLN03098        138 ALRDY  142 (453)
T ss_pred             HHHhc
Confidence            99983

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.57  E-value=2e-06  Score=77.45  Aligned_cols=109  Identities=12%  Similarity=0.018  Sum_probs=90.3

Q ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHH
Q 028390           67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL  146 (209)
Q Consensus        67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  146 (209)
                      |..+...|+|++|+..|.+++...|.++.               ++..++..+...+++++|+..+.++...+|.+... 
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~---------------~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-  172 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPD---------------LISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-  172 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------------HHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-
Confidence            44556779999999999999999887654               56788999999999999999999999999986554 


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          147 YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       147 ~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      ..++.++...++..+|+..++++++.+|++.++...+..+..+..
T Consensus       173 l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~  217 (822)
T PRK14574        173 MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR  217 (822)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            445556655777777999999999999999999887777665553

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.56  E-value=1.5e-07  Score=60.95  Aligned_cols=76  Identities=24%  Similarity=0.358  Sum_probs=66.4

Q ss_pred             hcCHHHHHHHHHHHhhhCCC--chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028390          122 LEDYSETSSLCTKVLELEPL--NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA  198 (209)
Q Consensus       122 ~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~  198 (209)
                      .|+|+.|+..+++++..+|.  +...++.+|.||+.+|++++|+..+++ ...+|.+......++.+.-.++++++.-+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            58999999999999999995  567788899999999999999999999 88899888998999999998888877643

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=4.6e-06  Score=63.90  Aligned_cols=136  Identities=18%  Similarity=0.133  Sum_probs=93.4

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh-------------HHH------HHHHHHHHHHHhHHHHHHHhhc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------DEK------HQANGLRLSCYLNNAACKLKLE  123 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~-------------~~~------~~~~~~~~~~~~~~a~~~~~~~  123 (209)
                      .+-.|..+-..|.|++|+++|...+.-+|++..+..             +-.      -+....-..+|..+|.+|+..|
T Consensus        89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~  168 (289)
T KOG3060|consen   89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG  168 (289)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence            445677777889999999999988886655432210             000      0011112346777888888888


Q ss_pred             CHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028390          124 DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS---ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA  198 (209)
Q Consensus       124 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~  198 (209)
                      +|++|.-.+++++-+.|.++-.+-++|.+++-+|   +...|..+|.++++++|.+..++..+..+-..+.+..+.+.
T Consensus       169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~~  246 (289)
T KOG3060|consen  169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAEL  246 (289)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHHH
Confidence            8888888888888888888888888888877777   45567888888888888777777777666666655544433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.55  E-value=1.3e-06  Score=71.36  Aligned_cols=99  Identities=13%  Similarity=-0.036  Sum_probs=85.5

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP  140 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  140 (209)
                      ......|..+...|++++|+..+.+++.+.|.+..               ++..+|.++...|++++|+..+.+++...|
T Consensus       115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~---------------~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW---------------AVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH---------------HHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            34456788899999999999999999999877643               689999999999999999999999999876


Q ss_pred             Cch----HHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 028390          141 LNV----KALYRRSQAHLKTSELEKAEADIKRALTIDP  174 (209)
Q Consensus       141 ~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p  174 (209)
                      ..+    ..+..+|.++...|++++|+..|++++...|
T Consensus       180 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         180 CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            432    3566899999999999999999999987766

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.55  E-value=2e-06  Score=68.48  Aligned_cols=111  Identities=22%  Similarity=0.253  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHhHHHHHc-CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           57 IEACERKKHDGNLLFRA-GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~-~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      ...+..+.+.|..+... |+++.|+.+|.+|+.++.....         ......++.+.|.++..+|+|++|++.|+++
T Consensus       111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~  181 (282)
T PF14938_consen  111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---------PHSAAECLLKAADLYARLGRYEEAIEIYEEV  181 (282)
T ss_dssp             HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            45577788888888888 9999999999999999877654         2445678899999999999999999999999


Q ss_pred             hhhCCC------ch-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390          136 LELEPL------NV-KALYRRSQAHLKTSELEKAEADIKRALTIDPNN  176 (209)
Q Consensus       136 l~~~p~------~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~  176 (209)
                      ....-.      +. ..++..+.|+...||...|...+++....+|.-
T Consensus       182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            865321      23 346778899999999999999999999999853

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=8e-07  Score=74.65  Aligned_cols=124  Identities=18%  Similarity=0.112  Sum_probs=111.1

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..|+.-|.-++--|.+.+|..+|.+|..+++.-++               +|...|..+.-.++-++|+..|.+|-++
T Consensus       311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp---------------aWl~fghsfa~e~EhdQAmaaY~tAarl  375 (611)
T KOG1173|consen  311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP---------------AWLAFGHSFAGEGEHDQAMAAYFTAARL  375 (611)
T ss_pred             CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH---------------HHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence            3556788888888899999999999999999766444               7999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ  197 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~  197 (209)
                      -|......+.+|.=|..++.+..|..+|..|+.+.|.+|-+...+.-+.-..+.+.+..
T Consensus       376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~  434 (611)
T KOG1173|consen  376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEAL  434 (611)
T ss_pred             ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHH
Confidence            99999999999999999999999999999999999999999999988877666665543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.54  E-value=5.9e-06  Score=65.39  Aligned_cols=121  Identities=15%  Similarity=0.110  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390           55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK  134 (209)
Q Consensus        55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  134 (209)
                      ....+|.-+-+.+..+..+.+.+.|+..+.+|++.+|+...               +-.-+|.++...|+|+.|++.+..
T Consensus       175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR---------------Asi~lG~v~~~~g~y~~AV~~~e~  239 (389)
T COG2956         175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR---------------ASIILGRVELAKGDYQKAVEALER  239 (389)
T ss_pred             chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee---------------hhhhhhHHHHhccchHHHHHHHHH
Confidence            34677888899999999999999999999999998887665               467889999999999999999999


Q ss_pred             HhhhCCCc-hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          135 VLELEPLN-VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       135 al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      +++.||.. +.+.-.+..||.++|+.++....+.++.+..++.. +...+..+...++
T Consensus       240 v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-~~l~l~~lie~~~  296 (389)
T COG2956         240 VLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD-AELMLADLIELQE  296 (389)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc-HHHHHHHHHHHhh
Confidence            99999998 66788899999999999999999999999887643 3344444444443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=4e-06  Score=65.78  Aligned_cols=116  Identities=18%  Similarity=0.094  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhcc
Q 028390           77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKT  156 (209)
Q Consensus        77 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~  156 (209)
                      +.-+...+.-+...|.+..               -|..+|.+|+.+|++..|...|.+++++.|+|+..+..+|.+++.+
T Consensus       139 ~~l~a~Le~~L~~nP~d~e---------------gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~  203 (287)
T COG4235         139 EALIARLETHLQQNPGDAE---------------GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQ  203 (287)
T ss_pred             HHHHHHHHHHHHhCCCCch---------------hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            4444455555555555544               4899999999999999999999999999999999999999998887


Q ss_pred             C---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028390          157 S---ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM  208 (209)
Q Consensus       157 ~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  208 (209)
                      .   ...++...|++++.++|+|..+...|........++.+. -..+..|+..+
T Consensus       204 a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A-~~~Wq~lL~~l  257 (287)
T COG4235         204 AGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEA-AAAWQMLLDLL  257 (287)
T ss_pred             cCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH-HHHHHHHHhcC
Confidence            7   466899999999999999999999999998888777755 33555665543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=5.1e-06  Score=63.67  Aligned_cols=83  Identities=17%  Similarity=0.215  Sum_probs=59.3

Q ss_pred             HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc---CHHHHHHHHHHHhhhCCC
Q 028390           65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE---DYSETSSLCTKVLELEPL  141 (209)
Q Consensus        65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~  141 (209)
                      +.++.|+..|+|.+|..+|.+.+-..|..+.               .+..+|.+++-+|   +++.|.++|.++++++|.
T Consensus       159 eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l---------------~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~  223 (289)
T KOG3060|consen  159 ELAEIYLSEGDFEKAAFCLEELLLIQPFNPL---------------YFQRLAEVLYTQGGAENLELARKYYERALKLNPK  223 (289)
T ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence            3456667778888888888887776655443               5677787777665   567788888888888888


Q ss_pred             chHHHHHHHHHHhccCCHHHH
Q 028390          142 NVKALYRRSQAHLKTSELEKA  162 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A  162 (209)
                      +..+++.+..|-..+-+..++
T Consensus       224 ~~ral~GI~lc~~~la~~sk~  244 (289)
T KOG3060|consen  224 NLRALFGIYLCGSALAQISKA  244 (289)
T ss_pred             hHHHHHHHHHHHHHHHHHhHH
Confidence            888888777766655544444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.53  E-value=6.9e-06  Score=68.58  Aligned_cols=125  Identities=15%  Similarity=0.168  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      +.+.+......|...+..|+|+.|.+...++-..    .+.+           ...+...+......|+++.|..++.++
T Consensus        80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~p-----------~l~~llaA~aA~~~g~~~~A~~~l~~A  144 (398)
T PRK10747         80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADH----AEQP-----------VVNYLLAAEAAQQRGDEARANQHLERA  144 (398)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----ccch-----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4556777788999999999999999666654442    2111           112344455557888899999999888


Q ss_pred             hhhCCCch-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          136 LELEPLNV-KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       136 l~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      .+.+|++. ......+..+...|+++.|...+++..+.+|+++.+...+..++-+.++...
T Consensus       145 ~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~  205 (398)
T PRK10747        145 AELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             HhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence            88888874 3444558888888999999999998888899888888888887766655544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.52  E-value=1.2e-05  Score=57.47  Aligned_cols=112  Identities=21%  Similarity=0.166  Sum_probs=91.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC-------CChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS-------FTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC  132 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  132 (209)
                      ...+...|......++...++..+.+++.+...+.-       ........+......+...++..+...|+++.|+..+
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            445556788888889999999999999998754321       1124557788889999999999999999999999999


Q ss_pred             HHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          133 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       133 ~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      .+++..+|.+..++..+-.+|...|+...|+..|.++..
T Consensus        86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.48  E-value=6e-06  Score=61.31  Aligned_cols=94  Identities=22%  Similarity=0.241  Sum_probs=79.7

Q ss_pred             HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCch-----HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNV-----KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      +-.-|.-++..|+|++|.+.|..||.++|..+     -.|.++|.|+.+++.++.|+.++.++++++|.+..+....+.+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            45567788999999999999999999999863     4688999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHhhhh
Q 028390          187 KDKQREYAKYQAEIFGTMLS  206 (209)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~  206 (209)
                      ++.+.++... -..|++...
T Consensus       178 yek~ek~eea-leDyKki~E  196 (271)
T KOG4234|consen  178 YEKMEKYEEA-LEDYKKILE  196 (271)
T ss_pred             HHhhhhHHHH-HHHHHHHHH
Confidence            8888776654 335665543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.47  E-value=9.5e-07  Score=74.32  Aligned_cols=89  Identities=12%  Similarity=0.050  Sum_probs=82.3

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      .++..+|..|...|+|++|+..|+.||..+|++...|.++|-.+....+..+|+..|.+|++|.|.-.-++..+....-.
T Consensus       431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN  510 (579)
T KOG1125|consen  431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN  510 (579)
T ss_pred             hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh
Confidence            47899999999999999999999999999999999999999999999999999999999999999998888888888777


Q ss_pred             HHHHHHHHH
Q 028390          190 QREYAKYQA  198 (209)
Q Consensus       190 ~~~~~~~~~  198 (209)
                      ++.+++.-+
T Consensus       511 lG~ykEA~~  519 (579)
T KOG1125|consen  511 LGAYKEAVK  519 (579)
T ss_pred             hhhHHHHHH
Confidence            777776544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.44  E-value=1.7e-06  Score=71.53  Aligned_cols=92  Identities=14%  Similarity=0.157  Sum_probs=56.9

Q ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHH
Q 028390           67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL  146 (209)
Q Consensus        67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  146 (209)
                      +..++..++-.+|+...++++...|.+               ..++...|..++..++++.|+..+.++..+.|+....|
T Consensus       207 A~v~l~~~~E~~AI~ll~~aL~~~p~d---------------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W  271 (395)
T PF09295_consen  207 ARVYLLMNEEVEAIRLLNEALKENPQD---------------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETW  271 (395)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHH
Confidence            444444555556666666666544332               23455666666667777777777777777777777777


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390          147 YRRSQAHLKTSELEKAEADIKRALTID  173 (209)
Q Consensus       147 ~~~a~~~~~~~~~~~A~~~~~~a~~l~  173 (209)
                      +.+|.+|..+|+++.|+..++.+....
T Consensus       272 ~~La~~Yi~~~d~e~ALlaLNs~Pm~~  298 (395)
T PF09295_consen  272 YQLAECYIQLGDFENALLALNSCPMLT  298 (395)
T ss_pred             HHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence            777777777777777776666554443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.44  E-value=4.1e-05  Score=58.00  Aligned_cols=121  Identities=11%  Similarity=0.039  Sum_probs=92.6

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-----------CHHHHH
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-----------DYSETS  129 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~A~  129 (209)
                      ......|..+++.|+|..|+..|...+...|..+.            ...+++.+|.+++.+.           ...+|+
T Consensus        43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~------------~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~  110 (203)
T PF13525_consen   43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK------------ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAI  110 (203)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT------------HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------------hhhHHHHHHHHHHHhCccchhcccChHHHHHHH
Confidence            45678899999999999999999999999998775            3457788888876653           345899


Q ss_pred             HHHHHHhhhCCCchHH-----------------HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          130 SLCTKVLELEPLNVKA-----------------LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       130 ~~~~~al~~~p~~~~~-----------------~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      ..++..++.-|++..+                 -+..|.-|.+.|.+..|+.-++.+++-.|+.+.....+..+.+.-.+
T Consensus       111 ~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~  190 (203)
T PF13525_consen  111 EEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYK  190 (203)
T ss_dssp             HHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence            9999999999987322                 24468999999999999999999999999987776666665544433


Q ss_pred             H
Q 028390          193 Y  193 (209)
Q Consensus       193 ~  193 (209)
                      .
T Consensus       191 l  191 (203)
T PF13525_consen  191 L  191 (203)
T ss_dssp             T
T ss_pred             h
Confidence            3

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.44  E-value=7.4e-07  Score=73.44  Aligned_cols=134  Identities=13%  Similarity=0.090  Sum_probs=105.1

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhh-----------------cCCCC-----hHHHHHHHHHHHHHHhHHHHHHH
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEF-----------------HHSFT-----DDEKHQANGLRLSCYLNNAACKL  120 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~-----------------~~~~~-----~~~~~~~~~~~~~~~~~~a~~~~  120 (209)
                      -...+..+++.|++..|++.+.-.-..+..                 ..++.     .+..-..+.....+..|.|.+.+
T Consensus       422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f  501 (840)
T KOG2003|consen  422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF  501 (840)
T ss_pred             hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence            346777888999999998876422211111                 11111     12223345666778889999999


Q ss_pred             hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      ..|++++|...|.+++..+.....++|++|..+..+|+.++|+.+|-+...+--++.+++..++.+++.++...+.
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa  577 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA  577 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence            9999999999999999999999999999999999999999999999998888788999999999999988776554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.42  E-value=4.8e-06  Score=68.06  Aligned_cols=141  Identities=12%  Similarity=-0.014  Sum_probs=106.1

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCC-------------C--hHHHHH-------HHHHHHHHHhHHHHHHH
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF-------------T--DDEKHQ-------ANGLRLSCYLNNAACKL  120 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~-------------~--~~~~~~-------~~~~~~~~~~~~a~~~~  120 (209)
                      ..-.|..++..|+++.|+..+.+++...|.+...             .  ......       ..+....++..+|.++.
T Consensus        46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~  125 (355)
T cd05804          46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE  125 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH
Confidence            4457889999999999999999999987765411             0  000000       11122345568889999


Q ss_pred             hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHHHHHH
Q 028390          121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV----KLVYMELKDKQREYAKY  196 (209)
Q Consensus       121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~----~~~l~~l~~~~~~~~~~  196 (209)
                      .+|++++|+..+.++++++|++..++..+|.+++..|++++|+..+.+++...|.++..    ...+..+.....+..+.
T Consensus       126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  205 (355)
T cd05804         126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA  205 (355)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999998754332    33567776666666555


Q ss_pred             HHHHHHhh
Q 028390          197 QAEIFGTM  204 (209)
Q Consensus       197 ~~~~~~~~  204 (209)
                      . ..|.+.
T Consensus       206 ~-~~~~~~  212 (355)
T cd05804         206 L-AIYDTH  212 (355)
T ss_pred             H-HHHHHH
Confidence            3 344443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.41  E-value=4.5e-06  Score=72.48  Aligned_cols=122  Identities=19%  Similarity=0.103  Sum_probs=106.6

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      -..+.-.|..+...+..++|..+..+|-.+++.               .+..|+.+|.++...|++++|.+.|..++.++
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l---------------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld  714 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPL---------------SASVYYLRGLLLEVKGQLEEAKEAFLVALALD  714 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh---------------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence            334556677777778888888888888776544               45689999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEA--DIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~--~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      |+++.....+|.++...|+-.-|..  .+..+++++|.|.+++..+..+-+...+..+.
T Consensus       715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A  773 (799)
T KOG4162|consen  715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA  773 (799)
T ss_pred             CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence            9999999999999999999888888  99999999999999999999999888877643

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.41  E-value=6e-06  Score=64.94  Aligned_cols=94  Identities=11%  Similarity=0.060  Sum_probs=74.3

Q ss_pred             HHHhHHHHHH-HhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 028390          110 SCYLNNAACK-LKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLV  182 (209)
Q Consensus       110 ~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~  182 (209)
                      ...+..|..+ +..|+|++|+..|...+...|++   +.++|.+|.+|+..|++++|+..|++++...|++   ++++..
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            4456666665 56799999999999999999988   5899999999999999999999999999998886   556656


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 028390          183 YMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       183 l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      +..+...+++..+. +..|.+.
T Consensus       223 lg~~~~~~g~~~~A-~~~~~~v  243 (263)
T PRK10803        223 VGVIMQDKGDTAKA-KAVYQQV  243 (263)
T ss_pred             HHHHHHHcCCHHHH-HHHHHHH
Confidence            66666655544433 3344443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.40  E-value=1.2e-06  Score=73.22  Aligned_cols=123  Identities=20%  Similarity=0.095  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh---cCHHHHHHH
Q 028390           55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL---EDYSETSSL  131 (209)
Q Consensus        55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~~  131 (209)
                      +....++.++.+|+..+..+.+..|+..|.+++...+..               +.+|.|++.++++.   |+--.|+.+
T Consensus       369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------------~~~l~nraa~lmkRkW~~d~~~AlrD  433 (758)
T KOG1310|consen  369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------------IYLLENRAAALMKRKWRGDSYLALRD  433 (758)
T ss_pred             hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------------hHHHHhHHHHHHhhhccccHHHHHHh
Confidence            456778899999999999999999999999999986653               45799999999875   567789999


Q ss_pred             HHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          132 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       132 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      |..+++++|...+++|+++.++..++.+.+|+.+...+....|.+........-+.+.++.
T Consensus       434 ch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~a  494 (758)
T KOG1310|consen  434 CHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDISA  494 (758)
T ss_pred             HHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchHH
Confidence            9999999999999999999999999999999999988888889776655555544444443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.40  E-value=9.5e-07  Score=49.82  Aligned_cols=42  Identities=21%  Similarity=0.279  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028390          144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  185 (209)
Q Consensus       144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  185 (209)
                      .+++.+|.+|..+|++++|+..|+++++.+|+|+.++..+..
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            355666666666666666666666666666666666655543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.39  E-value=1e-05  Score=54.93  Aligned_cols=106  Identities=19%  Similarity=0.232  Sum_probs=82.0

Q ss_pred             HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-----
Q 028390           64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-----  138 (209)
Q Consensus        64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----  138 (209)
                      ...|...+..|.|.+|...|.+|+.+..+-|.   ++.-+....-+-++..++..+..+|+|++++...+++|..     
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~---eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG   89 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPA---EEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG   89 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-T---TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCCh---HhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Confidence            45677888999999999999999998655443   4444455555667889999999999999999999999843     


Q ss_pred             --CC----CchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          139 --EP----LNVKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       139 --~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                        +.    .|+.+.+++|.++..+|..++|+..|+.+-++
T Consensus        90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence              33    35788899999999999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.38  E-value=6.2e-07  Score=47.51  Aligned_cols=32  Identities=31%  Similarity=0.488  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390          144 KALYRRSQAHLKTSELEKAEADIKRALTIDPN  175 (209)
Q Consensus       144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~  175 (209)
                      .+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.37  E-value=1e-06  Score=70.32  Aligned_cols=84  Identities=18%  Similarity=0.174  Sum_probs=71.9

Q ss_pred             HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      .-..|.-|+++|.|++||..|.+++..+|.|+-.+.++|.+|.++..|..|..++..|+.|+.....+.......+..+.
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            45789999999999999999999999999999999999999999999999999999999998766655555555555555


Q ss_pred             HHHH
Q 028390          192 EYAK  195 (209)
Q Consensus       192 ~~~~  195 (209)
                      ...+
T Consensus       180 ~~~E  183 (536)
T KOG4648|consen  180 NNME  183 (536)
T ss_pred             hHHH
Confidence            4443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.34  E-value=1.5e-05  Score=55.03  Aligned_cols=84  Identities=15%  Similarity=0.065  Sum_probs=69.6

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPN---NRVVKLVYM  184 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~---~~~~~~~l~  184 (209)
                      +.+++|.++-.+|+.++|+..|.+++......   ..+++.+|.++..+|++++|+..+++++.-.|+   +..+...+.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            57899999999999999999999999976444   678999999999999999999999999998888   666665555


Q ss_pred             HHHHHHHHHH
Q 028390          185 ELKDKQREYA  194 (209)
Q Consensus       185 ~l~~~~~~~~  194 (209)
                      .+.......+
T Consensus        83 l~L~~~gr~~   92 (120)
T PF12688_consen   83 LALYNLGRPK   92 (120)
T ss_pred             HHHHHCCCHH
Confidence            5544443333

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.33  E-value=6.3e-07  Score=47.54  Aligned_cols=32  Identities=28%  Similarity=0.353  Sum_probs=30.7

Q ss_pred             HHHHhhhCCCchHHHHHHHHHHhccCCHHHHH
Q 028390          132 CTKVLELEPLNVKALYRRSQAHLKTSELEKAE  163 (209)
Q Consensus       132 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~  163 (209)
                      |+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            78999999999999999999999999999986

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.32  E-value=1.2e-05  Score=67.20  Aligned_cols=126  Identities=12%  Similarity=0.024  Sum_probs=99.0

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      ........|..+...|+.+.|.....+++.. +.++.               +....+.  ...+++++++..++..++.
T Consensus       262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~---------------l~~l~~~--l~~~~~~~al~~~e~~lk~  323 (398)
T PRK10747        262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDER---------------LVLLIPR--LKTNNPEQLEKVLRQQIKQ  323 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHH---------------HHHHHhh--ccCCChHHHHHHHHHHHhh
Confidence            3445567788999999999999999999883 22221               1222222  2459999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      .|+++..++.+|.++...++|++|..+|+++++..|++... ..+..+.+...+..+. ...|++-
T Consensus       324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~-~~La~~~~~~g~~~~A-~~~~~~~  387 (398)
T PRK10747        324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDY-AWLADALDRLHKPEEA-AAMRRDG  387 (398)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCHHHH-HHHHHHH
Confidence            99999999999999999999999999999999999987653 4688888888776655 4455543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.31  E-value=0.00019  Score=55.35  Aligned_cols=125  Identities=18%  Similarity=0.149  Sum_probs=100.5

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+.+.|...++.|+|.+|+..|.......|..+-            ...+...++.++++.++|++|+...++-+.+.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~------------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly  101 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY------------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY  101 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc------------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            667889999999999999999999998876555433            24577889999999999999999999999999


Q ss_pred             CCch---HHHHHHHHHHhccCC--------HHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHH
Q 028390          140 PLNV---KALYRRSQAHLKTSE--------LEKAEADIKRALTIDPNN---RVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       140 p~~~---~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~l~p~~---~~~~~~l~~l~~~~~~~~~~  196 (209)
                      |.++   -++|-+|.+++..=+        ...|...|+..+...|++   +++...+..+..++...+-.
T Consensus       102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~  172 (254)
T COG4105         102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMA  172 (254)
T ss_pred             CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            8874   468888888766543        446889999999999987   56666677776666555443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.31  E-value=1.3e-06  Score=46.20  Aligned_cols=33  Identities=33%  Similarity=0.542  Sum_probs=30.2

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      .+|+++|.+|..+|++++|+..|+++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            479999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.31  E-value=1.3e-05  Score=63.85  Aligned_cols=105  Identities=18%  Similarity=0.141  Sum_probs=77.7

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh-cCHHHHHHHHHHHhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-EDYSETSSLCTKVLE  137 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~  137 (209)
                      .+..+.+ +-..++..++.+|+..|.+|+.++.....+         ...+.++.++|.+|... |+++.|++.|.+|++
T Consensus        74 Aa~~~~~-Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~---------~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~  143 (282)
T PF14938_consen   74 AAKAYEE-AANCYKKGDPDEAIECYEKAIEIYREAGRF---------SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE  143 (282)
T ss_dssp             HHHHHHH-HHHHHHHTTHHHHHHHHHHHHHHHHHCT-H---------HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHhhCHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444444 444445568888888888888887665553         44567899999999998 999999999999998


Q ss_pred             hCC--Cc----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390          138 LEP--LN----VKALYRRSQAHLKTSELEKAEADIKRALTID  173 (209)
Q Consensus       138 ~~p--~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~  173 (209)
                      +-.  +.    ...+...|.++..+|+|++|+..|+++....
T Consensus       144 ~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  144 LYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             HHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            621  11    4567889999999999999999999998753

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.28  E-value=2.2e-06  Score=45.21  Aligned_cols=33  Identities=36%  Similarity=0.477  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390          144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNN  176 (209)
Q Consensus       144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~  176 (209)
                      ++++.+|.++..+|++++|+.+|+++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456677777777777777777777777777664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.27  E-value=1.2e-05  Score=69.00  Aligned_cols=90  Identities=16%  Similarity=0.127  Sum_probs=76.7

Q ss_pred             HHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          107 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       107 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      ...++++.+|+.|...|++++|+.+++++|...|..++.|+.+|.++-+.|++.+|...++.|..+|+.|--+......-
T Consensus       192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy  271 (517)
T PF12569_consen  192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY  271 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence            35668899999999999999999999999999999999999999999999999999999999999999886666655544


Q ss_pred             HHHHHHHHHH
Q 028390          187 KDKQREYAKY  196 (209)
Q Consensus       187 ~~~~~~~~~~  196 (209)
                      .=+....++.
T Consensus       272 ~LRa~~~e~A  281 (517)
T PF12569_consen  272 LLRAGRIEEA  281 (517)
T ss_pred             HHHCCCHHHH
Confidence            4333443333

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=2.8e-05  Score=63.63  Aligned_cols=136  Identities=13%  Similarity=0.149  Sum_probs=106.0

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC-------------hHHHHHHHHH------HHHHHhHHHHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT-------------DDEKHQANGL------RLSCYLNNAACKL  120 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~-------------~~~~~~~~~~------~~~~~~~~a~~~~  120 (209)
                      .+.+-+.|..++..|++.+|+..|.++..++|..-..-             .+.......+      ...-|+--+...+
T Consensus       232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~  311 (564)
T KOG1174|consen  232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY  311 (564)
T ss_pred             HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence            55677899999999999999999999988766532110             0111111112      2223555566777


Q ss_pred             hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      ..++|..|+.+..++|+.+|.+..++..+|.++..+++.+.|+-.|+.|+.+.|.+-.....|-.++=..+..++
T Consensus       312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE  386 (564)
T KOG1174|consen  312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE  386 (564)
T ss_pred             hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence            889999999999999999999999999999999999999999999999999999988888877777655555444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.25  E-value=3e-05  Score=64.23  Aligned_cols=106  Identities=17%  Similarity=0.101  Sum_probs=94.8

Q ss_pred             cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHH
Q 028390           73 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA  152 (209)
Q Consensus        73 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~  152 (209)
                      .+.++.|+..+.+.....|.                  +..-++.+++..++-.+|++.+.+++...|.+...+...|..
T Consensus       182 t~~~~~ai~lle~L~~~~pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPE------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF  243 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            46788888888887665332                  356688999999999999999999999999999999999999


Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          153 HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       153 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      +...++++.|+...+++..+.|++...+..|+.++-.+++++++
T Consensus       244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~A  287 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENA  287 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999999999999999999999999999888765

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.25  E-value=2.9e-06  Score=47.82  Aligned_cols=42  Identities=24%  Similarity=0.259  Sum_probs=39.5

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA  152 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~  152 (209)
                      ++..+|.+|..+|++++|+..++++++.+|+++.+++.+|.+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            688999999999999999999999999999999999998853

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.21  E-value=2.6e-05  Score=70.37  Aligned_cols=112  Identities=10%  Similarity=0.023  Sum_probs=92.0

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh--
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL--  138 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--  138 (209)
                      .+++..|.+|-+.|++++|...|.+++++.|.++.               +.+|+|..|... ++++|++++.+|+..  
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~---------------aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE---------------IVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH---------------HHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            46888999999999999999999999999876554               678888887777 888888877777633  


Q ss_pred             ------------------CCCchHHHHH--------HH------------HHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028390          139 ------------------EPLNVKALYR--------RS------------QAHLKTSELEKAEADIKRALTIDPNNRVVK  180 (209)
Q Consensus       139 ------------------~p~~~~~~~~--------~a------------~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  180 (209)
                                        +|++.+.++.        ++            .+|...++|++++..++.+++.+|.|.-+.
T Consensus       181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~  260 (906)
T PRK14720        181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR  260 (906)
T ss_pred             hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence                              4555444222        23            788999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028390          181 LVYMELKD  188 (209)
Q Consensus       181 ~~l~~l~~  188 (209)
                      ..+..++.
T Consensus       261 ~~l~~~y~  268 (906)
T PRK14720        261 EELIRFYK  268 (906)
T ss_pred             HHHHHHHH
Confidence            99999887

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.21  E-value=3e-05  Score=66.65  Aligned_cols=129  Identities=18%  Similarity=0.117  Sum_probs=94.7

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC---------hHHHHHHHHHHH---------HHHhHHHHHHHhhcC
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT---------DDEKHQANGLRL---------SCYLNNAACKLKLED  124 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---------~~~~~~~~~~~~---------~~~~~~a~~~~~~~~  124 (209)
                      +...+...+..|+...|......|++..|.....+         .++.+..+.+..         .+|+..+.....+++
T Consensus       587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~  666 (913)
T KOG0495|consen  587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN  666 (913)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence            44455556666777777777777766655532211         222333333333         256677777778888


Q ss_pred             HHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          125 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       125 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      .++|+..|+++++.-|+..+.|+.+|+++..+++.+.|...|...++..|.....+-.++++.+...
T Consensus       667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~  733 (913)
T KOG0495|consen  667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999998888888887764

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=98.20  E-value=1.3e-05  Score=46.79  Aligned_cols=49  Identities=31%  Similarity=0.401  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      +.+|.+|.+++++|+|++|..+.+.+++++|+|..+......+.+++.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k   50 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK   50 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence            4578999999999999999999999999999999999888888776654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=1.5e-05  Score=64.84  Aligned_cols=100  Identities=16%  Similarity=0.117  Sum_probs=86.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ...+.+.+.++.+.++|..|+...+++|.+.|..               ..+++.+|.++..+++|+.|+.++.++++++
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N---------------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~  321 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNN---------------VKALYRRGQALLALGEYDLARDDFQKALKLE  321 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc---------------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence            4457888999999999999999999999987664               4589999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHH-HHHHHHHHhcCC
Q 028390          140 PLNVKALYRRSQAHLKTSELEKA-EADIKRALTIDP  174 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A-~~~~~~a~~l~p  174 (209)
                      |.|-.+...+..|..+..++... ...|.+.+..-+
T Consensus       322 P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  322 PSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99988888888888888776654 667777776543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.19  E-value=2.3e-05  Score=67.87  Aligned_cols=90  Identities=18%  Similarity=0.201  Sum_probs=78.3

Q ss_pred             HHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          107 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       107 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      ..+.+....|......++|+++..+++..++++|-....||++|-|..++++++.|..+|.+++.++|++.++++.++..
T Consensus       483 ~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a  562 (777)
T KOG1128|consen  483 ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA  562 (777)
T ss_pred             hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence            33444444555556679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 028390          187 KDKQREYAKY  196 (209)
Q Consensus       187 ~~~~~~~~~~  196 (209)
                      +-++++..+.
T Consensus       563 yi~~~~k~ra  572 (777)
T KOG1128|consen  563 YIRLKKKKRA  572 (777)
T ss_pred             HHHHhhhHHH
Confidence            8887776543

>PRK11906 transcriptional regulator; Provisional

Probab=98.18  E-value=4.5e-05  Score=63.51  Aligned_cols=103  Identities=12%  Similarity=0.096  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh---------cCHHHHHHHHHHHhhhCCCchHHH
Q 028390           76 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL---------EDYSETSSLCTKVLELEPLNVKAL  146 (209)
Q Consensus        76 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~  146 (209)
                      ...|+..|.+|+...+-+|.+            +.+|..+|.|++..         ..-.+|.....++++++|.++.++
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~------------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~  341 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLK------------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKIL  341 (458)
T ss_pred             HHHHHHHHHHHhhcccCCccc------------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            356777788888333333332            56788888888765         234577888889999999999999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          147 YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       147 ~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      ..+|.++...++++.|...|++|+.++|+.+.+......+.-.-
T Consensus       342 ~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~  385 (458)
T PRK11906        342 AIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHN  385 (458)
T ss_pred             HHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999988888777754433

>PRK15331 chaperone protein SicA; Provisional

Probab=98.18  E-value=1.5e-05  Score=57.60  Aligned_cols=89  Identities=12%  Similarity=-0.043  Sum_probs=79.7

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      .....+..|--++..|++++|...+..+...+|.+++.++.+|.|+..+++|+.|+..|-.+..++++|+...-....|.
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~  115 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ  115 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence            34456778888889999999999999999999999999999999999999999999999999999999988888888888


Q ss_pred             HHHHHHHHH
Q 028390          188 DKQREYAKY  196 (209)
Q Consensus       188 ~~~~~~~~~  196 (209)
                      -.+++....
T Consensus       116 l~l~~~~~A  124 (165)
T PRK15331        116 LLMRKAAKA  124 (165)
T ss_pred             HHhCCHHHH
Confidence            777766554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.17  E-value=2.5e-05  Score=62.40  Aligned_cols=110  Identities=19%  Similarity=0.128  Sum_probs=69.4

Q ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHH--HHHhhc--CHHHHHHHHHHHhhhCCCc
Q 028390           67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAA--CKLKLE--DYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~--~~~~A~~~~~~al~~~p~~  142 (209)
                      -..+.+.++++.|.+.+..+-++..+                 .+..+++.  +.+..|  .+.+|...|++..+..+.+
T Consensus       138 Vqi~L~~~R~dlA~k~l~~~~~~~eD-----------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t  200 (290)
T PF04733_consen  138 VQILLKMNRPDLAEKELKNMQQIDED-----------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST  200 (290)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHCCSCC-----------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCc-----------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC
Confidence            34556677777777777665443211                 12333333  333344  5788888888877776777


Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 028390          143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  193 (209)
Q Consensus       143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~  193 (209)
                      +..+..+|.|+..+|+|++|...+..++..+|.+++....+.-+...+.+.
T Consensus       201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            888888888888888888888888888888888887777776665555444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10941 hypothetical protein; Provisional

Probab=98.15  E-value=4.3e-05  Score=60.18  Aligned_cols=82  Identities=9%  Similarity=0.073  Sum_probs=73.7

Q ss_pred             HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028390          106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  185 (209)
Q Consensus       106 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  185 (209)
                      ........|+=.+|...++++.|+...+.++.++|+++.-+--+|.+|.++|.+..|..+++..++..|+++.+......
T Consensus       178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            45566789999999999999999999999999999999989999999999999999999999999999999887665444


Q ss_pred             HH
Q 028390          186 LK  187 (209)
Q Consensus       186 l~  187 (209)
                      +.
T Consensus       258 l~  259 (269)
T PRK10941        258 IH  259 (269)
T ss_pred             HH
Confidence            43

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.13  E-value=2.1e-05  Score=61.25  Aligned_cols=72  Identities=18%  Similarity=0.183  Sum_probs=64.2

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH---HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK---ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKL  181 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~  181 (209)
                      ..++..|.-.+..|+|++|+..++.++...|....   +.+.+|.+++++++++.|+..+++.++++|+++.+..
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~  107 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY  107 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence            34778899999999999999999999999998854   4599999999999999999999999999999865543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.13  E-value=1.4e-05  Score=69.74  Aligned_cols=128  Identities=27%  Similarity=0.375  Sum_probs=111.3

Q ss_pred             CHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh--hcCHHHHH
Q 028390           52 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK--LEDYSETS  129 (209)
Q Consensus        52 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~  129 (209)
                      ........+...+++|+..+.++++..|...|..++.+.|.+...           .+..+.+.+.|++.  +++|..++
T Consensus        45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~-----------~a~~~~~~~s~~m~~~l~~~~~~~  113 (748)
T KOG4151|consen   45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHV-----------VATLRSNQASCYMQLGLGEYPKAI  113 (748)
T ss_pred             chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchh-----------hhhHHHHHHHHHhhcCccchhhhc
Confidence            455667778889999999999999999999999999999865432           35578899999886  57999999


Q ss_pred             HHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          130 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       130 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      ..|+-++...|...++++.++.+|..++.++-|++++.-....+|.+.++...+.+++..+
T Consensus       114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998888899999988877666666554

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=98.13  E-value=5.4e-05  Score=62.03  Aligned_cols=114  Identities=11%  Similarity=0.134  Sum_probs=93.6

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT---DDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK  134 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  134 (209)
                      ++...-...|..+|+++.|.-|...|..|+++........   ....+++......+-..+..||+++++.+.|+....+
T Consensus       174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr  253 (569)
T PF15015_consen  174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR  253 (569)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence            3455556788899999999999999999999987632211   1223455556666778999999999999999999999


Q ss_pred             HhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          135 VLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       135 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      .|.++|.+.-.+++.|.|+..+.+|.+|-..+--+.-
T Consensus       254 sI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  254 SINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887766543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.10  E-value=6.4e-05  Score=64.74  Aligned_cols=120  Identities=15%  Similarity=0.094  Sum_probs=102.1

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      +...++...-.+..++|+.....||+.+|+.+               .+|..+|+++-++++.+.|...|...+..+|+.
T Consensus       654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~---------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~  718 (913)
T KOG0495|consen  654 WMKSANLERYLDNVEEALRLLEEALKSFPDFH---------------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS  718 (913)
T ss_pred             hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH---------------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            34444445556788889888898988877644               579999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028390          143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ  197 (209)
Q Consensus       143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~  197 (209)
                      +..|..++..-.+.|+.-.|...+.++.-.+|.|...+-..-++.-+..-..+.+
T Consensus       719 ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~  773 (913)
T KOG0495|consen  719 IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE  773 (913)
T ss_pred             chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999988887777766665554443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.09  E-value=1.7e-05  Score=63.29  Aligned_cols=92  Identities=25%  Similarity=0.279  Sum_probs=74.9

Q ss_pred             CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHh
Q 028390           75 KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHL  154 (209)
Q Consensus        75 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~  154 (209)
                      .+.+|...|.+....++..               ..+++.+|.|++.+|+|++|...+..++..+|.++.++.+++.+..
T Consensus       182 ~~~~A~y~f~El~~~~~~t---------------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~  246 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGST---------------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL  246 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--S---------------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            6899999999865543322               3568999999999999999999999999999999999999999999


Q ss_pred             ccCCH-HHHHHHHHHHHhcCCCCHHHHH
Q 028390          155 KTSEL-EKAEADIKRALTIDPNNRVVKL  181 (209)
Q Consensus       155 ~~~~~-~~A~~~~~~a~~l~p~~~~~~~  181 (209)
                      .+|+. +.+.+++.+....+|+++-+..
T Consensus       247 ~~gk~~~~~~~~l~qL~~~~p~h~~~~~  274 (290)
T PF04733_consen  247 HLGKPTEAAERYLSQLKQSNPNHPLVKD  274 (290)
T ss_dssp             HTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred             HhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence            99998 6677888888888999876543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.07  E-value=1e-05  Score=42.59  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=30.0

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      .++..+|.+++.+|+|++|+..++++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            468999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.07  E-value=2.9e-05  Score=69.37  Aligned_cols=136  Identities=11%  Similarity=0.090  Sum_probs=104.9

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC---------hHHHHHH------------HHHHHHHHhHHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT---------DDEKHQA------------NGLRLSCYLNNAAC  118 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---------~~~~~~~------------~~~~~~~~~~~a~~  118 (209)
                      +..+--.|..|...-+...|...|.+|.++++++....         ..+++..            .......|..+|..
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            44455667777666677888899999988877653321         1112111            11222346669999


Q ss_pred             HHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          119 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       119 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      |.+-+++.+|+..++.+++.+|.+...|..+|.+|-..|.+..|++.|.+|..++|.+.-+..-.+.+.....++++
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke  648 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE  648 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999988777766666666665554

>PRK11906 transcriptional regulator; Provisional

Probab=98.06  E-value=2.8e-05  Score=64.68  Aligned_cols=87  Identities=13%  Similarity=0.092  Sum_probs=77.7

Q ss_pred             CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHh
Q 028390           75 KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHL  154 (209)
Q Consensus        75 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~  154 (209)
                      +-.+|...-.+|+++++.++               .++..+|.+....++++.|+..+++++.++|+...+++..|.+..
T Consensus       319 ~~~~a~~~A~rAveld~~Da---------------~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~  383 (458)
T PRK11906        319 AAQKALELLDYVSDITTVDG---------------KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF  383 (458)
T ss_pred             HHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence            45567777777787766654               478899999999999999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHHhcCCCC
Q 028390          155 KTSELEKAEADIKRALTIDPNN  176 (209)
Q Consensus       155 ~~~~~~~A~~~~~~a~~l~p~~  176 (209)
                      ..|+.++|...++++++++|.-
T Consensus       384 ~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        384 HNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             HcCCHHHHHHHHHHHhccCchh
Confidence            9999999999999999999975

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.06  E-value=3.6e-05  Score=54.33  Aligned_cols=71  Identities=20%  Similarity=0.192  Sum_probs=63.9

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK  180 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  180 (209)
                      ..+++.|.-.+..|+|.+|++.++.+...-|..   ..+-+.+|-+|+..++++.|+..+++-++++|.++.+.
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd   84 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD   84 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence            357889999999999999999999999887654   78899999999999999999999999999999986543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.03  E-value=1.1e-05  Score=65.89  Aligned_cols=110  Identities=15%  Similarity=0.149  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390           55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK  134 (209)
Q Consensus        55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  134 (209)
                      ++...-.++-+.|+.+|-.|+|+.|+..-..-+.+...-.+         ....-.++.|+|.||..+|+|+.|+++|.+
T Consensus       190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~  260 (639)
T KOG1130|consen  190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAERRAHSNLGNCHIFLGNFELAIEHYKL  260 (639)
T ss_pred             hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence            44555566778889999999999999998888877654322         122345899999999999999999999988


Q ss_pred             Hhhh----CCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390          135 VLEL----EPLN--VKALYRRSQAHLKTSELEKAEADIKRALTID  173 (209)
Q Consensus       135 al~~----~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~  173 (209)
                      .+.+    ....  ...-|.+|.+|.-+.++++|+.+..+-+.+.
T Consensus       261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6643    4433  4567999999999999999999998866553

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.98  E-value=0.00012  Score=62.82  Aligned_cols=66  Identities=17%  Similarity=0.227  Sum_probs=34.2

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  176 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~  176 (209)
                      +|.-+|.++...++|++|+..|..|+.++|+|...+..++....++++++.....-.+.+++.|.+
T Consensus        77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~  142 (700)
T KOG1156|consen   77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ  142 (700)
T ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence            455555555555555555555555555555555555555555555555555544444445555444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.97  E-value=0.00042  Score=51.16  Aligned_cols=103  Identities=17%  Similarity=0.244  Sum_probs=87.9

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      .......|+.+...|++.+|..+|.+++.-.-.+.              ..+...++...+..+++..|...++.+.+.+
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d--------------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~  154 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD--------------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN  154 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC--------------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence            44566789999999999999999999986321111              3468999999999999999999999999998


Q ss_pred             CCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390          140 PLN--VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  176 (209)
Q Consensus       140 p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~  176 (209)
                      |..  ++.....|.+|..+|.+.+|...|+.++.-.|+-
T Consensus       155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~  193 (251)
T COG4700         155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP  193 (251)
T ss_pred             CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence            864  7788999999999999999999999999998863

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.93  E-value=1.8e-05  Score=41.70  Aligned_cols=32  Identities=22%  Similarity=0.381  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390          144 KALYRRSQAHLKTSELEKAEADIKRALTIDPN  175 (209)
Q Consensus       144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~  175 (209)
                      ++|+.+|.+|..+|++++|..+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45667777777777777777777777777664

...

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=0.00033  Score=56.56  Aligned_cols=125  Identities=16%  Similarity=0.083  Sum_probs=88.9

Q ss_pred             HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC----------------------------------------hHHH--
Q 028390           64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT----------------------------------------DDEK--  101 (209)
Q Consensus        64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~----------------------------------------~~~~--  101 (209)
                      ...|-.+|..|+|++|+..|.-+......+...+                                        .+++  
T Consensus        61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~  140 (557)
T KOG3785|consen   61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI  140 (557)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence            4578899999999999999988776322211111                                        0111  


Q ss_pred             HH----HHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390          102 HQ----ANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  177 (209)
Q Consensus       102 ~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~  177 (209)
                      -.    +++.. .-...+|.++...-.|.+||..|.+++.-+|........+|.||+++.-++-+...++-.+...|+++
T Consensus       141 ~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt  219 (557)
T KOG3785|consen  141 LTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST  219 (557)
T ss_pred             HHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence            00    11111 11345666666677788999999999988898888888899999999999999999999999999988


Q ss_pred             HHHHHHHHHHHH
Q 028390          178 VVKLVYMELKDK  189 (209)
Q Consensus       178 ~~~~~l~~l~~~  189 (209)
                      -+.+...-..-+
T Consensus       220 iA~NLkacn~fR  231 (557)
T KOG3785|consen  220 IAKNLKACNLFR  231 (557)
T ss_pred             HHHHHHHHHHhh
Confidence            777765544433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.92  E-value=0.00023  Score=55.41  Aligned_cols=91  Identities=15%  Similarity=0.097  Sum_probs=74.0

Q ss_pred             HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH---HHHHHHHH
Q 028390          112 YLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR---VVKLVYME  185 (209)
Q Consensus       112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~~l~~  185 (209)
                      .++-|.-+++.|+|..|...|..-++.-|++   +.++|.+|.+++.+|++++|...|..+.+-.|.++   ++.--+..
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6888899999999999999999999998876   78999999999999999999999999999988774   55555666


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 028390          186 LKDKQREYAKYQAEIFGT  203 (209)
Q Consensus       186 l~~~~~~~~~~~~~~~~~  203 (209)
                      +..++++..+. +.++..
T Consensus       224 ~~~~l~~~d~A-~atl~q  240 (262)
T COG1729         224 SLGRLGNTDEA-CATLQQ  240 (262)
T ss_pred             HHHHhcCHHHH-HHHHHH
Confidence            65555554433 334443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=7.2e-05  Score=60.25  Aligned_cols=106  Identities=16%  Similarity=0.113  Sum_probs=80.9

Q ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHH
Q 028390           67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL  146 (209)
Q Consensus        67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  146 (209)
                      =..+..+++|..|+...+-.+.......              .++-..+|.|++.+|+|++|+..|..+.+-+..+.+.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE--------------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~   94 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEE--------------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELG   94 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhh--------------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccc
Confidence            3456778999999998877664322211              23456678999999999999999999999888889999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          147 YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       147 ~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      .++|-|++.+|.|.+|.....++    |.++-..+.+-.+.-++
T Consensus        95 vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkl  134 (557)
T KOG3785|consen   95 VNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKL  134 (557)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHh
Confidence            99999999999999998766554    55665555555554433

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=97.92  E-value=2e-05  Score=52.02  Aligned_cols=40  Identities=20%  Similarity=0.357  Sum_probs=36.5

Q ss_pred             CCCCCccEEEEEeCccc-ccccCC-cCCCCCCceEEEEEEEc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEV-SELVSADSVLHYEVTLI   40 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~-~~~ip~~~~l~~~~~l~   40 (209)
                      ..|++||..+|.+.+++ ||..+. ...||+++++.|+|+|+
T Consensus        53 ~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   53 IGMKVGEKREFYVPPELAYGEKGLEPPKIPPNSTLVFEIELL   94 (94)
T ss_dssp             TTSBTTEEEEEEEEGGGTTTTTTBCTTTBTTTSEEEEEEEEE
T ss_pred             ccccCCCEeeeEeCChhhcCccccCCCCcCCCCeEEEEEEEC
Confidence            36999999999999999 999986 66799999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=0.00031  Score=54.52  Aligned_cols=129  Identities=16%  Similarity=0.221  Sum_probs=94.7

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC------------CChHH------------HHHHH--HHHHHHHh
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS------------FTDDE------------KHQAN--GLRLSCYL  113 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~------------~~~~~------------~~~~~--~~~~~~~~  113 (209)
                      -.......+.+...|+|.-.+..|.+.+...|....            +.+.+            ...++  +-...+..
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~  256 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM  256 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence            344555666777777777777777777776533211            00000            01111  12345678


Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHH
Q 028390          114 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVYMELKD  188 (209)
Q Consensus       114 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~~l~~  188 (209)
                      |.+.+|.-.++|..|...+++++..||.++.+..++|.|+..+|+..+|++.++.+....|..   ..+...+..+++
T Consensus       257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE  334 (366)
T KOG2796|consen  257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE  334 (366)
T ss_pred             hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999974   444445555544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.86  E-value=6.8e-05  Score=52.03  Aligned_cols=65  Identities=23%  Similarity=0.209  Sum_probs=58.8

Q ss_pred             HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390          112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  176 (209)
Q Consensus       112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~  176 (209)
                      +-..|.....-|+.+.|++.+.+++.+.|.++.+|.+++.++.-.|+.++|+.++++++++..+.
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            34556677788999999999999999999999999999999999999999999999999996543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=5e-05  Score=57.88  Aligned_cols=82  Identities=20%  Similarity=0.267  Sum_probs=70.4

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          113 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       113 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      ..-|.+++.-+.|..|+..|.++|.++|..+..|-+++.|+.++++|+.+..+.+++++++|+.......+....-..+.
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~   93 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG   93 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence            44567788889999999999999999999999999999999999999999999999999999987777766665544444


Q ss_pred             HH
Q 028390          193 YA  194 (209)
Q Consensus       193 ~~  194 (209)
                      +.
T Consensus        94 ~~   95 (284)
T KOG4642|consen   94 YD   95 (284)
T ss_pred             cc
Confidence            43

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.00036  Score=57.27  Aligned_cols=107  Identities=15%  Similarity=0.120  Sum_probs=55.0

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .++-.|..+|..++|..|+.+-.++|+..+...               .++.-.|...+.+|+.++|+-.+..|+.+-|.
T Consensus       302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~---------------~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~  366 (564)
T KOG1174|consen  302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH---------------EALILKGRLLIALERHTQAVIAFRTAQMLAPY  366 (564)
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc---------------hHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence            344555556666666666666666666544432               23444444455555555555555555555554


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY  183 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  183 (209)
                      ....|-.+-.+|...|.+.+|...-+.++..-|.+......+
T Consensus       367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~  408 (564)
T KOG1174|consen  367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF  408 (564)
T ss_pred             hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence            444444444455555555544444444444444444444433

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.0072  Score=46.27  Aligned_cols=112  Identities=20%  Similarity=0.213  Sum_probs=82.4

Q ss_pred             HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh-------------HH-------------------HHHHHHHHHHHHh
Q 028390           66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------DE-------------------KHQANGLRLSCYL  113 (209)
Q Consensus        66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~-------------~~-------------------~~~~~~~~~~~~~  113 (209)
                      .+..+|++++..+|+....++|+++.+.+.|+.             .+                   .++.......++.
T Consensus        79 eA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l  158 (288)
T KOG1586|consen   79 EAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL  158 (288)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence            444567788999999999999999988776651             00                   0112333344566


Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhhhCCCc------hH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390          114 NNAACKLKLEDYSETSSLCTKVLELEPLN------VK-ALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  177 (209)
Q Consensus       114 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~  177 (209)
                      ..|..--.+++|.+|+..|+.+....-+|      .+ -++.-|.|+....|.-.+...+++..+++|.-.
T Consensus       159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence            66777778899999999999988665443      23 356678999999999999999999999999743

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.76  E-value=0.00012  Score=65.72  Aligned_cols=110  Identities=15%  Similarity=0.100  Sum_probs=94.4

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP  140 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  140 (209)
                      ..+...|..+...+++..|+..|+.|++..|.+..               +|..+|.+|...|.|..|++.++++..++|
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n---------------~W~gLGeAY~~sGry~~AlKvF~kAs~LrP  627 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN---------------LWLGLGEAYPESGRYSHALKVFTKASLLRP  627 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCchhHH---------------HHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence            33455888889999999999999999999887654               799999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028390          141 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  185 (209)
Q Consensus       141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  185 (209)
                      .+.-+.|..|.....+|++.+|+..+..++.....-..+...+..
T Consensus       628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE  672 (1238)
T KOG1127|consen  628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAE  672 (1238)
T ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            999999999999999999999999999888765443333333333

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.73  E-value=0.00016  Score=54.64  Aligned_cols=75  Identities=11%  Similarity=0.067  Sum_probs=69.6

Q ss_pred             HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028390          106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK  180 (209)
Q Consensus       106 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  180 (209)
                      +.++.+++.+|..|-.+|-+.-|.-+++.++.+.|+-+.++..+|.-+..-|+|+.|...|..+++++|.+.-+.
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~  136 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH  136 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHH
Confidence            456778999999999999999999999999999999999999999999999999999999999999999875443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.70  E-value=6.8e-05  Score=39.38  Aligned_cols=33  Identities=36%  Similarity=0.460  Sum_probs=30.1

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      .+|..+|.+|..+|++++|+..+.++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            368999999999999999999999999999954

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.67  E-value=0.00062  Score=58.10  Aligned_cols=102  Identities=20%  Similarity=0.227  Sum_probs=83.2

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP  140 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  140 (209)
                      .-....|..+...|+.++|+..|++++...           ..+.++...++..++.|++.+.+|++|..++.+..+.. 
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-----------~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-  335 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQ-----------SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-  335 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccch-----------hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-
Confidence            336678899999999999999999998532           22446677889999999999999999999999998854 


Q ss_pred             CchHH--HHHHHHHHhccCCH-------HHHHHHHHHHHhcCC
Q 028390          141 LNVKA--LYRRSQAHLKTSEL-------EKAEADIKRALTIDP  174 (209)
Q Consensus       141 ~~~~~--~~~~a~~~~~~~~~-------~~A~~~~~~a~~l~p  174 (209)
                      .+.++  .|-.|.|+..+++.       ++|...+.++..+-.
T Consensus       336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            34454  45578999999999       889999988877643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.66  E-value=0.0055  Score=46.79  Aligned_cols=103  Identities=13%  Similarity=0.046  Sum_probs=74.4

Q ss_pred             HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHH-------HHHHhhh
Q 028390           66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL-------CTKVLEL  138 (209)
Q Consensus        66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~al~~  138 (209)
                      .+..+-....+++|+..|.-|+-...-....        ....+.++..+|++|..+++-+.....       |.+++..
T Consensus        83 ~~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~--------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~  154 (214)
T PF09986_consen   83 KPRDFSGERTLEEAIESYKLALLCAQIKKEK--------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN  154 (214)
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            3335556678999999999998764432211        134677899999999999995554444       4444443


Q ss_pred             CC------CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390          139 EP------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  176 (209)
Q Consensus       139 ~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~  176 (209)
                      ..      +....+|.+|....++|++++|..+|.+++..-..+
T Consensus       155 e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  155 EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            32      225788999999999999999999999999764433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.63  E-value=0.00042  Score=56.05  Aligned_cols=135  Identities=16%  Similarity=0.185  Sum_probs=98.1

Q ss_pred             HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC--
Q 028390           64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL--  141 (209)
Q Consensus        64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--  141 (209)
                      ...|+.+...+.|+++++.|..|+++.....+.         -+...++..+|..+..++++++|+-+..+|.++-..  
T Consensus       126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~---------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~  196 (518)
T KOG1941|consen  126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDA---------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG  196 (518)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc---------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence            348888889999999999999999987654432         233567899999999999999999998888866321  


Q ss_pred             --c------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 028390          142 --N------VKALYRRSQAHLKTSELEKAEADIKRALTID--PNN----RVVKLVYMELKDKQREYAKYQAEIFGTMLSK  207 (209)
Q Consensus       142 --~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~--p~~----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  207 (209)
                        +      .-++|.++.++..+|..-+|.++.+++.++.  ..|    .-....+..|++...+.+.. -..|...+++
T Consensus       197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a-f~rYe~Am~~  275 (518)
T KOG1941|consen  197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA-FRRYEQAMGT  275 (518)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH-HHHHHHHHHH
Confidence              1      3467889999999999999999999998763  333    33344556666655554443 2345544444


Q ss_pred             C
Q 028390          208 M  208 (209)
Q Consensus       208 ~  208 (209)
                      |
T Consensus       276 m  276 (518)
T KOG1941|consen  276 M  276 (518)
T ss_pred             H
Confidence            4

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.63  E-value=0.00076  Score=55.52  Aligned_cols=102  Identities=13%  Similarity=0.056  Sum_probs=83.0

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC-
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP-  140 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-  140 (209)
                      ++-+.|+.+.-.|+++.|+++|..++.+.-.-..         ....+...+.+|..|..+.++++||.+..+-+.+-. 
T Consensus       237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~---------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe  307 (639)
T KOG1130|consen  237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN---------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE  307 (639)
T ss_pred             hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788999999999999999999887654332         133456788999999999999999999988765532 


Q ss_pred             -----CchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          141 -----LNVKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       141 -----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                           .-..+++.+|.+|..+|..++|+.+.+..+++
T Consensus       308 L~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  308 LEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                 23678999999999999999999998888765

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.61  E-value=0.00011  Score=38.18  Aligned_cols=32  Identities=25%  Similarity=0.395  Sum_probs=22.6

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390          145 ALYRRSQAHLKTSELEKAEADIKRALTIDPNN  176 (209)
Q Consensus       145 ~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~  176 (209)
                      +++++|.++..+|++++|...|++++...|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            56777777777777777777777777766653

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.56  E-value=0.00064  Score=58.16  Aligned_cols=101  Identities=12%  Similarity=0.093  Sum_probs=89.4

Q ss_pred             cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHH
Q 028390           73 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA  152 (209)
Q Consensus        73 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~  152 (209)
                      .|....|+.+...|+...|.....              -..++|.+.++-+-.-.|-..+..++.+...-+-.++.+|.+
T Consensus       620 ~gn~~~a~~cl~~a~~~~p~~~~v--------------~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~  685 (886)
T KOG4507|consen  620 VGNSTFAIACLQRALNLAPLQQDV--------------PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNA  685 (886)
T ss_pred             cCCcHHHHHHHHHHhccChhhhcc--------------cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchh
Confidence            577888999999998877765544              378999999999999999999999999997778889999999


Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          153 HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       153 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      +..+.+.+.|++.|+.|++++|+++.+.+.|..+.
T Consensus       686 ~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  686 YLALKNISGALEAFRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             HHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            99999999999999999999999999988877664

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.55  E-value=0.0052  Score=50.18  Aligned_cols=127  Identities=16%  Similarity=0.181  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHH
Q 028390           54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT  133 (209)
Q Consensus        54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  133 (209)
                      ..+...+......|...+..|+|..|.....++-+.-+.               -...|.--+...-.+|+++.|=.++.
T Consensus        78 ~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~---------------p~l~~l~aA~AA~qrgd~~~an~yL~  142 (400)
T COG3071          78 RRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ---------------PVLAYLLAAEAAQQRGDEDRANRYLA  142 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc---------------hHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            356677888888999999999999999998886553221               13456666777778888888888888


Q ss_pred             HHhhh-CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          134 KVLEL-EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       134 ~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      ++-+. +.+...+...++..+...|+++.|......+++..|.++.+.+...+++-+++....
T Consensus       143 eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~  205 (400)
T COG3071         143 EAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA  205 (400)
T ss_pred             HHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence            88888 334466778888888888888888888888888888888888888887777665543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.49  E-value=0.0011  Score=51.37  Aligned_cols=72  Identities=21%  Similarity=0.209  Sum_probs=64.7

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK  180 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  180 (209)
                      +..+++-|...+..|+|++|++.++.+....|..   .++.+.++.++++.++++.|+..+++-+.+.|.++.+-
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d  108 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD  108 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence            4468899999999999999999999999887654   78999999999999999999999999999999886553

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.47  E-value=7.9e-05  Score=39.38  Aligned_cols=33  Identities=30%  Similarity=0.318  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHH
Q 028390           82 KYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS  129 (209)
Q Consensus        82 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~  129 (209)
                      .|++||++.|+++.               +|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~---------------a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAE---------------AYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHH---------------HHHHHHHHHHHCcCHHhhc
Confidence            37899999887654               8999999999999999986

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.46  E-value=0.0041  Score=53.65  Aligned_cols=97  Identities=16%  Similarity=0.092  Sum_probs=85.3

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .+.-.+..+...|++++|+++.++||...|+.               +.+|...|.++-..|++.+|....+.+-.+|+.
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~---------------~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~  260 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL---------------VELYMTKARILKHAGDLKEAAEAMDEARELDLA  260 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence            34556778888999999999999999986664               458999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTID  173 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~  173 (209)
                      +.-.....+..+.+.|+.++|...+..-..-+
T Consensus       261 DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  261 DRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            98888889999999999999998887665443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.0035  Score=53.68  Aligned_cols=90  Identities=17%  Similarity=0.170  Sum_probs=73.7

Q ss_pred             HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC----
Q 028390           64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE----  139 (209)
Q Consensus        64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----  139 (209)
                      ++.+.++|+.+..++|+..++ .+.   ..+.              .+..-.|++.+++|+|++|+..|+..+..+    
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~-~~~---~~~~--------------~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~  144 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK-GLD---RLDD--------------KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ  144 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh-ccc---ccch--------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence            699999999999999999998 222   1222              257888999999999999999999986432    


Q ss_pred             --------------------------C-CchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          140 --------------------------P-LNVKALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       140 --------------------------p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                                                | +....+|+.|-++...|+|.+|++.+++++.
T Consensus       145 d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~  203 (652)
T KOG2376|consen  145 DEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR  203 (652)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence                                      2 2456789999999999999999999999944

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.43  E-value=0.0069  Score=45.02  Aligned_cols=101  Identities=15%  Similarity=0.068  Sum_probs=80.0

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .....+..++..++++.|+...+.++..-.+            ..+...+-.++|.+.+.+|++++|+..++....  +.
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~  156 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLDTIKE--ES  156 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--cc
Confidence            4567888899999999999999999864221            245666788999999999999999888765532  22


Q ss_pred             c-hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390          142 N-VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  176 (209)
Q Consensus       142 ~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~  176 (209)
                      + .-..-.+|.++...|+-++|...|++++..++++
T Consensus       157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         157 WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            2 2235679999999999999999999999988543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.40  E-value=0.004  Score=55.89  Aligned_cols=63  Identities=5%  Similarity=-0.062  Sum_probs=50.6

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                      ..|..+...+...|+++.|...+++++.++|++...|..++.+|...|++++|...++...+.
T Consensus       495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            357777777778888888888888888888888888888888888888888888888776543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.37  E-value=0.0012  Score=52.42  Aligned_cols=84  Identities=21%  Similarity=0.155  Sum_probs=72.2

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      +.+-.+.|.-..+.|+.++|...+..|+.++|.++.++...|.....-++.-+|-++|-+|+.++|.|.++....++...
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~p  195 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTP  195 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccch
Confidence            33446666777789999999999999999999999999999999999999999999999999999999998877666444


Q ss_pred             HHHH
Q 028390          189 KQRE  192 (209)
Q Consensus       189 ~~~~  192 (209)
                      -.+.
T Consensus       196 lV~~  199 (472)
T KOG3824|consen  196 LVSA  199 (472)
T ss_pred             HHHH
Confidence            3333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=0.00052  Score=54.28  Aligned_cols=93  Identities=18%  Similarity=0.299  Sum_probs=76.7

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+....+.|...|+.|+|+.|+..|+.|++...-.+.               +-+|+|.|+++.++++.|+++..++++.
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl---------------lAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL---------------LAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCCCch---------------hHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            4566788999999999999999999999998665554               5689999999999999999999988865


Q ss_pred             C----CC-------------------------chHHHHHHHHHHhccCCHHHHHHHH
Q 028390          139 E----PL-------------------------NVKALYRRSQAHLKTSELEKAEADI  166 (209)
Q Consensus       139 ~----p~-------------------------~~~~~~~~a~~~~~~~~~~~A~~~~  166 (209)
                      .    |.                         -..++..++-++++.++++.|...+
T Consensus       208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence            2    21                         1356667788999999999988766

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.37  E-value=0.0052  Score=54.91  Aligned_cols=116  Identities=16%  Similarity=0.068  Sum_probs=95.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHH
Q 028390           68 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALY  147 (209)
Q Consensus        68 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  147 (209)
                      ......+++..|+....+.++..|....               +..-.|.+.+++|++++|...++..-...+++...+-
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~---------------a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq   81 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKKHPNALY---------------AKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQ   81 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHCCCcHH---------------HHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHH
Confidence            4456778999999999998887666432               4566778899999999999665555556677777888


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028390          148 RRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAE  199 (209)
Q Consensus       148 ~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  199 (209)
                      -+-.||..++++++|...|+++...+|+ .+....+-.++-|.+.+++.++-
T Consensus        82 ~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQka  132 (932)
T KOG2053|consen   82 FLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKA  132 (932)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999 88888888888888888766553

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.36  E-value=0.0044  Score=55.61  Aligned_cols=140  Identities=12%  Similarity=0.032  Sum_probs=91.6

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCC-C-------------hHH-HHHHHHH--------HHHHHhHHHH
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF-T-------------DDE-KHQANGL--------RLSCYLNNAA  117 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~-~-------------~~~-~~~~~~~--------~~~~~~~~a~  117 (209)
                      ..|......+.+.|+.++|+..|.+.+...-. |+. +             -++ ..-+...        ....|..+..
T Consensus       392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~-Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~  470 (697)
T PLN03081        392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVA-PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE  470 (697)
T ss_pred             eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence            34566667777777777777777776542111 100 0             011 1111111        1235777888


Q ss_pred             HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028390          118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ  197 (209)
Q Consensus       118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~  197 (209)
                      .+.+.|++++|.+.+.+. ...| +...|..+..++...|+++.|...+++.+.+.|++......+..++.+..+..+..
T Consensus       471 ~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~  548 (697)
T PLN03081        471 LLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA  548 (697)
T ss_pred             HHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence            888889999988887653 2334 45568888888999999999999999999999988777777888777776665543


Q ss_pred             HHHHHhh
Q 028390          198 AEIFGTM  204 (209)
Q Consensus       198 ~~~~~~~  204 (209)
                      + .++.|
T Consensus       549 ~-v~~~m  554 (697)
T PLN03081        549 K-VVETL  554 (697)
T ss_pred             H-HHHHH
Confidence            3 44444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.36  E-value=0.0012  Score=56.88  Aligned_cols=67  Identities=13%  Similarity=-0.037  Sum_probs=59.2

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .+...|......|++++|...|++|+.+.+.                ..+|..+|.++...|++++|+..|.+|+.++|.
T Consensus       422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----------------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        422 IYEILAVQALVKGKTDEAYQAINKAIDLEMS----------------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            3555677788899999999999999999763                247999999999999999999999999999999


Q ss_pred             chH
Q 028390          142 NVK  144 (209)
Q Consensus       142 ~~~  144 (209)
                      ++.
T Consensus       486 ~pt  488 (517)
T PRK10153        486 ENT  488 (517)
T ss_pred             Cch
Confidence            875

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.33  E-value=0.0028  Score=44.21  Aligned_cols=84  Identities=21%  Similarity=0.251  Sum_probs=67.1

Q ss_pred             HHHHhHHHHHHHhhc---CHHHHHHHHHHHhh-hCCC-chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390          109 LSCYLNNAACKLKLE---DYSETSSLCTKVLE-LEPL-NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY  183 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  183 (209)
                      ....+|+|++.....   +..+.+..++.++. -.|. .....|.+|..++++++|+.|+.+.+..++.+|+|..+...-
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            345688888887654   45577888888886 3343 366789999999999999999999999999999999998877


Q ss_pred             HHHHHHHHH
Q 028390          184 MELKDKQRE  192 (209)
Q Consensus       184 ~~l~~~~~~  192 (209)
                      ..++..+.+
T Consensus       112 ~~ied~itk  120 (149)
T KOG3364|consen  112 ETIEDKITK  120 (149)
T ss_pred             HHHHHHHhh
Confidence            777665543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.32  E-value=0.0012  Score=38.48  Aligned_cols=40  Identities=30%  Similarity=0.494  Sum_probs=33.1

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS  150 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a  150 (209)
                      .++.+|..+.++|+|+.|..+++.+|+++|+|..+.-...
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            4678899999999999999999999999999988755443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.27  E-value=0.02  Score=41.97  Aligned_cols=58  Identities=29%  Similarity=0.388  Sum_probs=25.9

Q ss_pred             HHHhhcCHHHHHHHHHHHhhhCC---CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390          118 CKLKLEDYSETSSLCTKVLELEP---LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN  175 (209)
Q Consensus       118 ~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~  175 (209)
                      ++...++++.|+..+.+++..+|   .....++.++..+...++++.|+..+.+++...|.
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            44444444444444444444333   22333333444444444444444444444444444

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.27  E-value=0.06  Score=42.80  Aligned_cols=124  Identities=19%  Similarity=0.114  Sum_probs=91.4

Q ss_pred             CCCHHHHHHHHHHHHHHhHHHHHcC-CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHH
Q 028390           50 KMDTHEKIEACERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSET  128 (209)
Q Consensus        50 ~~~~~~~~~~a~~~~~~g~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A  128 (209)
                      ..++......+..+++-|...+.++ ++..|+..+.+|.++++.... .........+++..++..++.+|+..+.++..
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            3466677888999999999999999 999999999999999755211 01112334577888999999999998877643


Q ss_pred             ---HHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 028390          129 ---SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP  174 (209)
Q Consensus       129 ---~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p  174 (209)
                         ......+-.-.|+.+..++-.-.+..+.++.+.+...+.+.+.--+
T Consensus       104 ~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  104 EKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence               3333334344577777775555666668999999999998887544

It is also involved in sporulation [].

>smart00028 TPR Tetratricopeptide repeats

Probab=97.27  E-value=0.00054  Score=34.38  Aligned_cols=31  Identities=39%  Similarity=0.557  Sum_probs=16.7

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390          145 ALYRRSQAHLKTSELEKAEADIKRALTIDPN  175 (209)
Q Consensus       145 ~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~  175 (209)
                      +++++|.++..+++++.|...+.++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4455555555555555555555555555443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.25  E-value=0.00035  Score=58.23  Aligned_cols=66  Identities=29%  Similarity=0.341  Sum_probs=61.1

Q ss_pred             HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390          112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  177 (209)
Q Consensus       112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~  177 (209)
                      +-+-+...++-+.|+.|+..|.+||+++|++...+-+++.++.+.++|..|+.++.++++++|...
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~   72 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI   72 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh
Confidence            456677788899999999999999999999999999999999999999999999999999999753

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.23  E-value=0.00062  Score=35.17  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=29.9

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      +++++|.|+.++|++++|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            57899999999999999999999999999874

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.23  E-value=0.00064  Score=36.29  Aligned_cols=25  Identities=24%  Similarity=0.190  Sum_probs=13.4

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHH
Q 028390          146 LYRRSQAHLKTSELEKAEADIKRAL  170 (209)
Q Consensus       146 ~~~~a~~~~~~~~~~~A~~~~~~a~  170 (209)
                      +.++|.+|..+|+|++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555555555555555555555544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.21  E-value=0.01  Score=44.02  Aligned_cols=114  Identities=16%  Similarity=0.122  Sum_probs=88.4

Q ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh-hCCCchHH
Q 028390           67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE-LEPLNVKA  145 (209)
Q Consensus        67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~  145 (209)
                      +....++=+.+.++....+.+...|+..                -...+|.....+|++.+|...|..++. +--++...
T Consensus        63 ~~a~~q~ldP~R~~Rea~~~~~~ApTvq----------------nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~  126 (251)
T COG4700          63 LMALQQKLDPERHLREATEELAIAPTVQ----------------NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAM  126 (251)
T ss_pred             HHHHHHhcChhHHHHHHHHHHhhchhHH----------------HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHH
Confidence            3334444566666666666666655532                378899999999999999999999986 56778899


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHH
Q 028390          146 LYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       146 ~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      +..++.+++..+++..|...+++..+-+|.  .++..-.+.+....+.+..+.
T Consensus       127 lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~A  179 (251)
T COG4700         127 LLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADA  179 (251)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhH
Confidence            999999999999999999999999999885  466666777776666655544

>PLN03077 Protein ECB2; Provisional

Probab=97.17  E-value=0.015  Score=53.43  Aligned_cols=135  Identities=13%  Similarity=0.042  Sum_probs=86.3

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHH--hhcCCCC-----------hHH-H---HHHH-----HHHHHHHhHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKII--EFHHSFT-----------DDE-K---HQAN-----GLRLSCYLNNAA  117 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~--~~~~~~~-----------~~~-~---~~~~-----~~~~~~~~~~a~  117 (209)
                      ...|......+.+.|+.++|+..|.+....-  |+...+.           -++ .   ..+.     ......|..+..
T Consensus       554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~  633 (857)
T PLN03077        554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD  633 (857)
T ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            3457777788888888888888888876532  1111110           011 1   1111     112346777777


Q ss_pred             HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      .+.+.|++++|.+.+++. .+.|+ ...|..+-.++...++.+.|....+++++++|++......+..++....+..+.
T Consensus       634 ~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a  710 (857)
T PLN03077        634 LLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV  710 (857)
T ss_pred             HHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence            777788888887777654 34443 455656666667777788887778888888888888888888887666554443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.16  E-value=0.00066  Score=36.22  Aligned_cols=29  Identities=17%  Similarity=0.161  Sum_probs=24.6

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +|.++|.+|..+|+|++|++.|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47899999999999999999999966543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.011  Score=50.72  Aligned_cols=119  Identities=18%  Similarity=0.145  Sum_probs=83.2

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC---------hHHHHH----H---H--HHHHHHHhHHHHHHHhh
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT---------DDEKHQ----A---N--GLRLSCYLNNAACKLKL  122 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---------~~~~~~----~---~--~~~~~~~~~~a~~~~~~  122 (209)
                      ..++..-+.+...++|++|+..-.+.+...|++...-         .+..+.    +   .  .......+..|-|.+++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            3455666677777888888888888777765543210         000000    0   0  11112235788999999


Q ss_pred             cCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 028390          123 EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLV  182 (209)
Q Consensus       123 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~  182 (209)
                      ++.++|+..++   -.++...+....+|++++++++|++|...|....+-+.++.+....
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r  149 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR  149 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence            99999999988   5667778889999999999999999999999998877666554443

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.0096  Score=51.66  Aligned_cols=105  Identities=16%  Similarity=0.104  Sum_probs=87.5

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      +...+.+.|...|+..+|..+++.|..++...+++--         +...+.+..+++.||+.+.+.+.|.+.+.+|=+.
T Consensus       353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~---------~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~  423 (872)
T KOG4814|consen  353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY---------SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV  423 (872)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhh---------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence            3445788899999999999999999999998776532         2334778999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                      +|.++-.-+....+...-+.-++|+..+......
T Consensus       424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            9999877777777777888888888877666543

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.13  E-value=0.024  Score=53.18  Aligned_cols=94  Identities=9%  Similarity=-0.045  Sum_probs=42.1

Q ss_pred             HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh----hC
Q 028390           64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE----LE  139 (209)
Q Consensus        64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~  139 (209)
                      ......+.+.|++++|+..|.......- .++             ...|+.+...+.+.|++++|...+.....    +.
T Consensus       511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv-~PD-------------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~  576 (1060)
T PLN03218        511 GALIDGCARAGQVAKAFGAYGIMRSKNV-KPD-------------RVVFNALISACGQSGAVDRAFDVLAEMKAETHPID  576 (1060)
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHcCC-CCC-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence            3344455666777777666665543210 011             12344444444444444444444444432    12


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                      |+ ...|..+..+|.+.|++++|...|+...+.
T Consensus       577 PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~  608 (1060)
T PLN03218        577 PD-HITVGALMKACANAGQVDRAKEVYQMIHEY  608 (1060)
T ss_pred             Cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            22 233344444444444444444444444443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.017  Score=45.10  Aligned_cols=130  Identities=17%  Similarity=0.143  Sum_probs=81.9

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc---------CCCChH--HHHHHHHHH-HHHHhHHHHHHHhh----cCHH
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFH---------HSFTDD--EKHQANGLR-LSCYLNNAACKLKL----EDYS  126 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~---------~~~~~~--~~~~~~~~~-~~~~~~~a~~~~~~----~~~~  126 (209)
                      ....|..+...|++++|+........+.-..         ..+...  +..++.+.- -.....+|..|.+.    +++.
T Consensus       111 ~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~q  190 (299)
T KOG3081|consen  111 LLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQ  190 (299)
T ss_pred             HHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhh
Confidence            3446777888999999988776543221110         000000  001111110 11233455555442    4577


Q ss_pred             HHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       127 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      .|.-.|+..-+-.|..+..+...+.|...+++|++|...++.++.-++.+++.+..+--+.-.+.+
T Consensus       191 dAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  191 DAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK  256 (299)
T ss_pred             hHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence            788888887776777888888888899999999999999999998888888887777665544433

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.0081  Score=48.20  Aligned_cols=85  Identities=15%  Similarity=0.112  Sum_probs=69.3

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY  183 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  183 (209)
                      .+.-|-.-|.-|++-++|..|+..|+++|.....+    .-.|.+||-|...+|+|..|+.+..+++.++|.+..+.-.=
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            45557788999999999999999999999875443    45688999999999999999999999999999986665544


Q ss_pred             HHHHHHHHH
Q 028390          184 MELKDKQRE  192 (209)
Q Consensus       184 ~~l~~~~~~  192 (209)
                      +.|.-.++.
T Consensus       160 Akc~~eLe~  168 (390)
T KOG0551|consen  160 AKCLLELER  168 (390)
T ss_pred             hHHHHHHHH
Confidence            444444443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.035  Score=43.97  Aligned_cols=114  Identities=17%  Similarity=0.146  Sum_probs=90.3

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH-------
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV-------  135 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-------  135 (209)
                      ...+|......|++..|...|..++...+....               +...++.|+...|+.+.|...+...       
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~---------------~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~  201 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSE---------------AKLLLAECLLAAGDVEAAQAILAALPLQAQDK  201 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcccch---------------HHHHHHHHHHHcCChHHHHHHHHhCcccchhh
Confidence            556788889999999999999999999877643               5788888898888887665555431       


Q ss_pred             ---------------------------hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHH
Q 028390          136 ---------------------------LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP--NNRVVKLVYMEL  186 (209)
Q Consensus       136 ---------------------------l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p--~~~~~~~~l~~l  186 (209)
                                                 +.-+|++..+-+.+|..+...|+.+.|...+-..+..+-  .+..+++.+-.+
T Consensus       202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~  281 (304)
T COG3118         202 AAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLEL  281 (304)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence                                       123699999999999999999999999999988887754  456777777666


Q ss_pred             HHHHH
Q 028390          187 KDKQR  191 (209)
Q Consensus       187 ~~~~~  191 (209)
                      -....
T Consensus       282 f~~~g  286 (304)
T COG3118         282 FEAFG  286 (304)
T ss_pred             HHhcC
Confidence            65554

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.08  E-value=0.00032  Score=56.15  Aligned_cols=65  Identities=22%  Similarity=0.234  Sum_probs=58.2

Q ss_pred             HHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 028390          117 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKL  181 (209)
Q Consensus       117 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~  181 (209)
                      .-.+..|.++.|++.|..+|.++|.....|-.++.++.+++....|+.++..+++++|+...-..
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~yk  186 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYK  186 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccc
Confidence            44456788999999999999999999999999999999999999999999999999998644333

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.07  E-value=0.019  Score=42.14  Aligned_cols=108  Identities=28%  Similarity=0.267  Sum_probs=77.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC-chHHHH
Q 028390           69 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL-NVKALY  147 (209)
Q Consensus        69 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~  147 (209)
                      .++..|+++.|...|.+++...+....            ....+...+..+...++++.|+..+.+++...+. ....+.
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  206 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNE------------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL  206 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccc------------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence            788889999999999998774442011            1234555555577788888888888888888888 688888


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          148 RRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       148 ~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      .++.++...+++..|...+..++...|........+.....
T Consensus       207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (291)
T COG0457         207 NLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL  247 (291)
T ss_pred             HhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence            88888888888888888888888888874444444443333

>smart00028 TPR Tetratricopeptide repeats

Probab=97.07  E-value=0.0013  Score=32.93  Aligned_cols=32  Identities=41%  Similarity=0.532  Sum_probs=29.5

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      ++.++|.++..+++++.|+..+..++.++|.+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            68899999999999999999999999988853

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.06  E-value=0.007  Score=44.47  Aligned_cols=68  Identities=18%  Similarity=0.210  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          125 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL----------EKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       125 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      |+.|.+.++.....+|.+.+++++.|.++..+.++          ++|+.-|+.|+.++|+...+.-.+....-.+..
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999888654          568888999999999998888777776655543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.05  E-value=0.035  Score=52.11  Aligned_cols=84  Identities=10%  Similarity=-0.007  Sum_probs=40.9

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhC-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELE-PLNVKALYRRSQAHLKTSELEKAEADIKRALTI--DPNNRVVKLVYMELK  187 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~~l~  187 (209)
                      .|+.+...+.+.|++++|.+.+....+.+ +.+...|..+..+|.+.|++++|...|+...+.  .| +......+-...
T Consensus       651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy  729 (1060)
T PLN03218        651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITAL  729 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence            34444555555555555555555554432 233445555555555555555555555555432  23 233344444444


Q ss_pred             HHHHHHHH
Q 028390          188 DKQREYAK  195 (209)
Q Consensus       188 ~~~~~~~~  195 (209)
                      -+..+.++
T Consensus       730 ~k~G~~ee  737 (1060)
T PLN03218        730 CEGNQLPK  737 (1060)
T ss_pred             HHCCCHHH
Confidence            44444433

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=97.01  E-value=0.0013  Score=51.80  Aligned_cols=42  Identities=26%  Similarity=0.384  Sum_probs=38.5

Q ss_pred             CCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccccc
Q 028390            2 TMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTK   44 (209)
Q Consensus         2 ~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~   44 (209)
                      .|++|+...|.|.+++ ||..|. +.||||+.+.|+|+|+.+..
T Consensus       208 ~Mk~Gek~~l~IP~~laYG~~g~-~gIppns~LvfeVeLl~V~~  250 (269)
T PRK10902        208 NIKKGGKIKLVIPPELAYGKAGV-PGIPANSTLVFDVELLDVKP  250 (269)
T ss_pred             cCCCCcEEEEEECchhhCCCCCC-CCCCCCCcEEEEEEEEEecc
Confidence            6999999999999999 999985 47999999999999999864

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.99  E-value=0.025  Score=47.63  Aligned_cols=90  Identities=16%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             HHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HHHH
Q 028390          117 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR-EYAK  195 (209)
Q Consensus       117 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~-~~~~  195 (209)
                      ..-.++++++.+...|.+-|+..|.+..+|...|..=..+|+.+.|...|+-|++...-+-......+-|.-.+. ..-+
T Consensus       445 elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e  524 (677)
T KOG1915|consen  445 ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE  524 (677)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence            445577888888888888888888888888888888888888888888888887654333222222222222221 1223


Q ss_pred             HHHHHHHhhhh
Q 028390          196 YQAEIFGTMLS  206 (209)
Q Consensus       196 ~~~~~~~~~~~  206 (209)
                      +.+..|.++++
T Consensus       525 kaR~LYerlL~  535 (677)
T KOG1915|consen  525 KARALYERLLD  535 (677)
T ss_pred             HHHHHHHHHHH
Confidence            55666666654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.96  E-value=0.0015  Score=49.74  Aligned_cols=60  Identities=23%  Similarity=0.342  Sum_probs=55.5

Q ss_pred             HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390          118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  177 (209)
Q Consensus       118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~  177 (209)
                      ...+.++.+.|.+.+.+++.+-|.|...|+|+|.-..+.|+++.|.+.|++.++++|.+-
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            345678899999999999999999999999999999999999999999999999999864

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.96  E-value=0.016  Score=46.11  Aligned_cols=124  Identities=15%  Similarity=0.149  Sum_probs=86.4

Q ss_pred             HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh-hcCHHHHHHHHHHHhhhCCCch
Q 028390           65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVLELEPLNV  143 (209)
Q Consensus        65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~  143 (209)
                      ...+...+.+..+.|...|.+|.....  ..             ..+|...|..-+. .++.+.|...++.++...|.+.
T Consensus         6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~-------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~   70 (280)
T PF05843_consen    6 QYMRFMRRTEGIEAARKVFKRARKDKR--CT-------------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP   70 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCC--S--------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHcCCC--CC-------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH
Confidence            344445555558899999999974211  11             2368888888666 5677779999999999999999


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNR---VVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      ..|..-..-+..+|+.+.|...|++++..-|...   .++..+...+......... .+.++++
T Consensus        71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v-~~v~~R~  133 (280)
T PF05843_consen   71 DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESV-RKVEKRA  133 (280)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Confidence            9999999999999999999999999998877654   5666555555555443322 2344444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=0.009  Score=46.73  Aligned_cols=78  Identities=13%  Similarity=0.145  Sum_probs=69.4

Q ss_pred             HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390          106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY  183 (209)
Q Consensus       106 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  183 (209)
                      .....+..|+=..+...++++.|....++.+.++|.++.-+--+|.+|.++|.+.-|+.++...++..|+++.+....
T Consensus       178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir  255 (269)
T COG2912         178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR  255 (269)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence            445556778888899999999999999999999999999999999999999999999999999999999987765433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.95  E-value=0.022  Score=52.59  Aligned_cols=102  Identities=16%  Similarity=0.130  Sum_probs=69.3

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .....|..+...|+++.|...+.+++.........         .....++.++|.++...|++++|...+.+++.+-..
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~  563 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVY---------HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEE  563 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            34456667777788888888888887765543221         122345677788888888888888888887765211


Q ss_pred             --------chHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          142 --------NVKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       142 --------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                              ....+..+|.++...|++++|...+.+++.+
T Consensus       564 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  602 (903)
T PRK04841        564 QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV  602 (903)
T ss_pred             hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence                    1233456777888888888888888887765

>PLN03077 Protein ECB2; Provisional

Probab=96.94  E-value=0.036  Score=51.04  Aligned_cols=92  Identities=14%  Similarity=0.004  Sum_probs=70.3

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      +....+.+.+.|++++|.+.+.+.    +-.++             ..+|..+-..+..-++.+.+.....++++++|++
T Consensus       628 y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd-------------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~  690 (857)
T PLN03077        628 YACVVDLLGRAGKLTEAYNFINKM----PITPD-------------PAVWGALLNACRIHRHVELGELAAQHIFELDPNS  690 (857)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHC----CCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence            444555666677777777766543    11222             3356666666677899999999999999999999


Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          143 VKALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      ...|..++.+|...|+|++|....+...+
T Consensus       691 ~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        691 VGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             cchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            99999999999999999999988877654

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.94  E-value=0.12  Score=43.26  Aligned_cols=126  Identities=18%  Similarity=0.257  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh--cC-----HHHH
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--ED-----YSET  128 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~-----~~~A  128 (209)
                      .+.........|..++..|+|.+|+..|+..|...+-....+.++..+..++...+...+-.+-+.+  +.     .+..
T Consensus       200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~  279 (422)
T PF06957_consen  200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ  279 (422)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence            3444555667899999999999999999999998776555555666777777666544333333332  22     2233


Q ss_pred             HHHHHHH-----hhhCCCchHHHHHHH-HHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 028390          129 SSLCTKV-----LELEPLNVKALYRRS-QAHLKTSELEKAEADIKRALTIDPNNRVVKL  181 (209)
Q Consensus       129 ~~~~~~a-----l~~~p~~~~~~~~~a-~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~  181 (209)
                      .+.++.+     .++.|.+...-++.| ...++.++|..|....++.+++.|..+.+.+
T Consensus       280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q  338 (422)
T PF06957_consen  280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ  338 (422)
T ss_dssp             HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Confidence            2333333     355666666666666 4678999999999999999999998765443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.022  Score=43.98  Aligned_cols=129  Identities=16%  Similarity=0.112  Sum_probs=84.2

Q ss_pred             HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh----hhC-
Q 028390           65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL----ELE-  139 (209)
Q Consensus        65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~~-  139 (209)
                      +++-......++++|+..|++++.+...+.+.         +.-..++...+.++.+++.|.+|-..+.+-.    ..+ 
T Consensus       115 eKAak~lenv~Pd~AlqlYqralavve~~dr~---------~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~  185 (308)
T KOG1585|consen  115 EKAAKALENVKPDDALQLYQRALAVVEEDDRD---------QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA  185 (308)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhccchH---------HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence            34444445667788888888888887665442         3445678888899999999999987776643    233 


Q ss_pred             -CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          140 -PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN-NRVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       140 -p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                       +...+++...-.+|...+|+..|...++..-++..- .++--+   .+...+.-+.+.+-..+++|.
T Consensus       186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r---~lenLL~ayd~gD~E~~~kvl  250 (308)
T KOG1585|consen  186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSR---SLENLLTAYDEGDIEEIKKVL  250 (308)
T ss_pred             cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHH---HHHHHHHHhccCCHHHHHHHH
Confidence             344566777778888888999999999987665321 122222   233334455555555555553

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.85  E-value=0.026  Score=41.79  Aligned_cols=102  Identities=16%  Similarity=0.133  Sum_probs=79.1

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..-..+...|+-+.+.|+++.|++.|.++.......            ...+.++.++-.+.+..++|..+..+..++-.
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            345567899999999999999999999988765443            23567889999999999999999999998876


Q ss_pred             hCC--Cch----HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          138 LEP--LNV----KALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       138 ~~p--~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      +-.  .++    +.....|..+...++|..|...|-.+..
T Consensus       102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            532  222    2344467788889999999888866643

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.84  E-value=0.04  Score=46.66  Aligned_cols=96  Identities=19%  Similarity=0.214  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhcc
Q 028390           77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKT  156 (209)
Q Consensus        77 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~  156 (209)
                      ..=+..|+.|...++.+..               +|.+-.....+.+.+.+--..|..++..+|+++..|..-|.=.+..
T Consensus        88 ~rIv~lyr~at~rf~~D~~---------------lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~  152 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVK---------------LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEI  152 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhh
Confidence            3345678888888776554               5666655555667799999999999999999999999999877777


Q ss_pred             CC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          157 SE-LEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       157 ~~-~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      +. .+.|.+.+.+++.++|+++..+..+-++.
T Consensus       153 n~ni~saRalflrgLR~npdsp~Lw~eyfrmE  184 (568)
T KOG2396|consen  153 NLNIESARALFLRGLRFNPDSPKLWKEYFRME  184 (568)
T ss_pred             ccchHHHHHHHHHHhhcCCCChHHHHHHHHHH
Confidence            76 99999999999999999999988776653

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.82  E-value=0.015  Score=37.97  Aligned_cols=66  Identities=14%  Similarity=0.147  Sum_probs=53.4

Q ss_pred             HHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHH
Q 028390          128 TSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN--RVVKLVYMELKDKQREY  193 (209)
Q Consensus       128 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l~~l~~~~~~~  193 (209)
                      .+..+...+..+|++..+.+.+|.++...|+++.|+..+-.++..+++.  ..+++.+-.+-+.+...
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            4667888999999999999999999999999999999999999998764  77777777777766553

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.81  E-value=0.025  Score=52.21  Aligned_cols=100  Identities=10%  Similarity=0.055  Sum_probs=79.5

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC-
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL-  141 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-  141 (209)
                      ....|..++..|+++.|...+..++...+....          .....+...+|.++...|++++|...+.+++..... 
T Consensus       455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~  524 (903)
T PRK04841        455 NALRAQVAINDGDPEEAERLAELALAELPLTWY----------YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH  524 (903)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence            334678888999999999999999986433211          123446788999999999999999999999875322 


Q ss_pred             ---c--hHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          142 ---N--VKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       142 ---~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                         .  ..++..+|.++...|+++.|...+.+++.+
T Consensus       525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence               1  346778899999999999999999999886

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.76  E-value=0.032  Score=37.68  Aligned_cols=95  Identities=17%  Similarity=0.112  Sum_probs=68.9

Q ss_pred             HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcC-----------HHHHHHHHHH
Q 028390           66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED-----------YSETSSLCTK  134 (209)
Q Consensus        66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-----------~~~A~~~~~~  134 (209)
                      .+..++.+|++-+|++...+.+..-+.+...            ..++..-|.++..+..           .-.+++.+.+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~------------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~   69 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESS------------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSR   69 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCch------------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHH
Confidence            5678999999999999999999876655432            1234444544443321           3467778888


Q ss_pred             HhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          135 VLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       135 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                      +..+.|.....+|.+|.-+.....|+++....++++.+
T Consensus        70 a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   70 AVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            88888888888888887777777778888777777765

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.73  E-value=0.077  Score=41.61  Aligned_cols=82  Identities=15%  Similarity=0.108  Sum_probs=65.6

Q ss_pred             HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh----h--CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 028390          106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLE----L--EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV  179 (209)
Q Consensus       106 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~  179 (209)
                      +....+...+|.+.++.|+-+.|..+++++-.    +  ...+.-+..+.+.+|.-.+++..|...+.+++..||.++.+
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a  288 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA  288 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence            55677888999999999999999999985532    2  23445667778888888899999999999999999998877


Q ss_pred             HHHHHHHH
Q 028390          180 KLVYMELK  187 (209)
Q Consensus       180 ~~~l~~l~  187 (209)
                      .+..+.|.
T Consensus       289 ~NnKALcl  296 (366)
T KOG2796|consen  289 NNNKALCL  296 (366)
T ss_pred             hchHHHHH
Confidence            66555544

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.65  E-value=0.029  Score=43.81  Aligned_cols=70  Identities=20%  Similarity=0.269  Sum_probs=59.6

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHH-HHHHHHHHhcCCCCHHH
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKA-EADIKRALTIDPNNRVV  179 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A-~~~~~~a~~l~p~~~~~  179 (209)
                      .+.+..+.|++.+++|++|...+..++.-+++++..+.++-.+-..+|.-.++ .+.+.+....+|.++-+
T Consensus       208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  208 LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            46899999999999999999999999999999999999999998888876554 44555666678887655

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.63  E-value=0.054  Score=43.86  Aligned_cols=125  Identities=10%  Similarity=0.013  Sum_probs=83.5

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-CCC
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-EPL  141 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~  141 (209)
                      ....+...+..|.+.+|...+.+.+.-.|++--               ++...-..++.+|+...-...+.+++.. +|+
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDll---------------a~kfsh~a~fy~G~~~~~k~ai~kIip~wn~d  170 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLL---------------AVKFSHDAHFYNGNQIGKKNAIEKIIPKWNAD  170 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchhhh---------------hhhhhhhHHHhccchhhhhhHHHHhccccCCC
Confidence            344556677888999998889988887776532               2344445566677777777777777766 444


Q ss_pred             c---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028390          142 N---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFG  202 (209)
Q Consensus       142 ~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~  202 (209)
                      -   .-..--.+.++...|-+++|...-+++++++|.|.=+.-.++.+.+.-...++.-..+|+
T Consensus       171 lp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  171 LPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             CcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            3   333334566778888888888888888888888766666666666555555544444443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.60  E-value=0.0077  Score=47.99  Aligned_cols=83  Identities=17%  Similarity=0.185  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      ..+.+..-...+....+.|+.++|...|..|+.+.|+.+.               ++..+|...-.-++.-+|=.+|.+|
T Consensus       112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~---------------~L~e~G~f~E~~~~iv~ADq~Y~~A  176 (472)
T KOG3824|consen  112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ---------------ILIEMGQFREMHNEIVEADQCYVKA  176 (472)
T ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH---------------HHHHHhHHHHhhhhhHhhhhhhhee
Confidence            3445556667888889999999999999999999887654               6788888887778888999999999


Q ss_pred             hhhCCCchHHHHHHHHHH
Q 028390          136 LELEPLNVKALYRRSQAH  153 (209)
Q Consensus       136 l~~~p~~~~~~~~~a~~~  153 (209)
                      +.++|.|.+++.+++...
T Consensus       177 LtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  177 LTISPGNSEALVNRARTT  194 (472)
T ss_pred             eeeCCCchHHHhhhhccc
Confidence            999999999999987543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.58  E-value=0.15  Score=43.21  Aligned_cols=127  Identities=12%  Similarity=0.152  Sum_probs=98.2

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP  140 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  140 (209)
                      ..+...|.--...++++.|.+.|..||.....               .+.+|..-+.+-++.+....|....++|+.+-|
T Consensus        74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r---------------~itLWlkYae~Emknk~vNhARNv~dRAvt~lP  138 (677)
T KOG1915|consen   74 QVWIKYAQWEESQKEIQRARSVFERALDVDYR---------------NITLWLKYAEFEMKNKQVNHARNVWDRAVTILP  138 (677)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc---------------cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence            34555566666788999999999999986433               245899999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          141 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      .-.+.||...-.=..+|+...|.+.|++=++..|+ ..++..+-.-.-+.++.. .-+.+|.+.
T Consensus       139 RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeie-raR~IYerf  200 (677)
T KOG1915|consen  139 RVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIE-RARSIYERF  200 (677)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHH-HHHHHHHHH
Confidence            99999999999999999999999999999999996 344443433333333333 335566553

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.55  E-value=0.0098  Score=50.15  Aligned_cols=120  Identities=18%  Similarity=0.042  Sum_probs=87.9

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH-HHHHHhHHHHHHHhhcCHHHHHHHHHHHhh-h
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGL-RLSCYLNNAACKLKLEDYSETSSLCTKVLE-L  138 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~  138 (209)
                      ..+.-+.+..|-.|+|+.|.+.....=.-  ..+.++     ...++ .-..++|+|-+++.++.|..++.++.+|++ .
T Consensus       241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~--~~~g~~-----~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~  313 (696)
T KOG2471|consen  241 MALLLKSQLEYAHGNHPKAMKLLLVSNIH--KEAGGT-----ITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNS  313 (696)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHhcccc--cccCcc-----ccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHH
Confidence            34455667777788888887776532111  011100     00111 223579999999999999999999999995 2


Q ss_pred             C--------C---------CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          139 E--------P---------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       139 ~--------p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      +        |         .....+|+.|..|...|+.-.|.++|.++.+..-.||-.|-.++.|=
T Consensus       314 c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC  379 (696)
T KOG2471|consen  314 CSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC  379 (696)
T ss_pred             HHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            1        1         23567999999999999999999999999999999999999988863

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.52  E-value=0.029  Score=45.99  Aligned_cols=111  Identities=20%  Similarity=0.060  Sum_probs=64.5

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      ....+..+...|++++|.+...+++...-+.                .++.-.  -....+++..=++..++.+...|++
T Consensus       266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~----------------~L~~~~--~~l~~~d~~~l~k~~e~~l~~h~~~  327 (400)
T COG3071         266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDP----------------RLCRLI--PRLRPGDPEPLIKAAEKWLKQHPED  327 (400)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhccCh----------------hHHHHH--hhcCCCCchHHHHHHHHHHHhCCCC
Confidence            3456677788999999999999888752211                011111  1124455555566666666666666


Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      +..++.+|..+.+.+.|.+|..+|+.+++.-|+. +....++.+...+.+
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~  376 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGE  376 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCC
Confidence            6666666666666666666666666666665542 333444444444433

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.50  E-value=0.028  Score=35.47  Aligned_cols=67  Identities=18%  Similarity=0.208  Sum_probs=54.9

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      .+....+.|..+|.+.+.+.|+..+.+++...++.+            ....++-.+..+|...|+|.+.+.+...=+.
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677999999999999999999999999766532            3567788888999999999998887755443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.47  E-value=0.037  Score=43.82  Aligned_cols=106  Identities=12%  Similarity=0.106  Sum_probs=81.6

Q ss_pred             HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT---DDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      ..|......+.+..+...+..+...  .++++.   ..++..+.+..+.++..++..+...++++.++..+++.+..+|-
T Consensus       108 ~a~~~~~~~~~~~~~~~~~~~g~~~--~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~  185 (280)
T COG3629         108 RAGLKARAGLRFEQAGELLSEGPVL--GDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPY  185 (280)
T ss_pred             hcccchhhhHHHHHHHHHhhcCCcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc
Confidence            3444455545556665555541110  111111   24456788889999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                      +..+|.++-.+|+..|+...|+..|++.-++
T Consensus       186 ~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         186 DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             chHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            9999999999999999999999999988764

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.022  Score=44.04  Aligned_cols=79  Identities=19%  Similarity=0.146  Sum_probs=65.1

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh--------CCC----------chHHHHHHHHHHhccCCHHHHHHHHHHH
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLEL--------EPL----------NVKALYRRSQAHLKTSELEKAEADIKRA  169 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a  169 (209)
                      .+.++...|.-++++|+|.+|...|..|+..        .|.          ....+.+.++|+...|+|-+++.....+
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            3457888999999999999999999998732        232          3457899999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHH
Q 028390          170 LTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       170 ~~l~p~~~~~~~~l~~l  186 (209)
                      +..+|.|..+....++.
T Consensus       257 L~~~~~nvKA~frRakA  273 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKA  273 (329)
T ss_pred             HhcCCchHHHHHHHHHH
Confidence            99999987776554443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.45  E-value=0.15  Score=36.06  Aligned_cols=91  Identities=23%  Similarity=0.249  Sum_probs=65.4

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhhhC---------C-Cc------------hHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 028390          113 LNNAACKLKLEDYSETSSLCTKVLELE---------P-LN------------VKALYRRSQAHLKTSELEKAEADIKRAL  170 (209)
Q Consensus       113 ~~~a~~~~~~~~~~~A~~~~~~al~~~---------p-~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~  170 (209)
                      ...|......++.+.++..+.+++.+-         + .+            ..+...++.++...|+++.|+..+.+++
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            334445556678888888888888663         1 11            3456667888999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          171 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       171 ~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      .++|.+..+...+..+....+.....- ..|.++
T Consensus        90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~-~~Y~~~  122 (146)
T PF03704_consen   90 ALDPYDEEAYRLLMRALAAQGRRAEAL-RVYERY  122 (146)
T ss_dssp             HHSTT-HHHHHHHHHHHHHTT-HHHHH-HHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHCcCHHHHH-HHHHHH
Confidence            999999999999999988887776543 345443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.34  E-value=0.054  Score=45.92  Aligned_cols=105  Identities=18%  Similarity=0.199  Sum_probs=57.3

Q ss_pred             HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-CCCc
Q 028390           64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-EPLN  142 (209)
Q Consensus        64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~  142 (209)
                      +..|.++.+.|+.++|++.|...++.+|....             ..++.|+..|++.++.|.++...+.+--++ -|.+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~-------------l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS  329 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------------LNIRENLIEALLELQAYADVQALLAKYDDISLPKS  329 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccch-------------hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence            45666666677777777777776665553222             335667777777777777766655554322 1344


Q ss_pred             hHHHHHHHHHHhc-cCC---------------HHHHHHHHHHHHhcCCCCHHHHH
Q 028390          143 VKALYRRSQAHLK-TSE---------------LEKAEADIKRALTIDPNNRVVKL  181 (209)
Q Consensus       143 ~~~~~~~a~~~~~-~~~---------------~~~A~~~~~~a~~l~p~~~~~~~  181 (209)
                      ....|..|..-.+ .++               ...|.+.+.+|++.+|..+.-.-
T Consensus       330 Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  330 ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence            4444444432211 111               12355666677777666554433

The molecular function of this protein is uncertain.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.33  E-value=0.065  Score=42.68  Aligned_cols=97  Identities=10%  Similarity=0.132  Sum_probs=73.3

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhc-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK-TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      +|........+.+..+.|...+.+|+...+.+...|...|..-+. .++.+.|...|+.+++..|.+...+..+..-.-.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            355555666667779999999999997777789999999999555 6777779999999999999999888887777666


Q ss_pred             HHHHHHHHHHHHHhhhhcC
Q 028390          190 QREYAKYQAEIFGTMLSKM  208 (209)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~  208 (209)
                      +.+.. .-|..|.+.++.+
T Consensus        83 ~~d~~-~aR~lfer~i~~l  100 (280)
T PF05843_consen   83 LNDIN-NARALFERAISSL  100 (280)
T ss_dssp             TT-HH-HHHHHHHHHCCTS
T ss_pred             hCcHH-HHHHHHHHHHHhc
Confidence            66554 4477777766554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.32  E-value=0.061  Score=42.93  Aligned_cols=103  Identities=14%  Similarity=0.099  Sum_probs=78.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHH
Q 028390           70 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRR  149 (209)
Q Consensus        70 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  149 (209)
                      +.+..+|.+|+....--.+..|..               ...+.-+|.||....+|..|...|+..-.+.|...+..+.-
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~---------------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~   84 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRS---------------RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ   84 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccc---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            356677777777766555544322               23578999999999999999999999999999999999999


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          150 SQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       150 a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      |+.+++-+.+.+|+.......    +++..+...-.++..++
T Consensus        85 AQSLY~A~i~ADALrV~~~~~----D~~~L~~~~lqLqaAIk  122 (459)
T KOG4340|consen   85 AQSLYKACIYADALRVAFLLL----DNPALHSRVLQLQAAIK  122 (459)
T ss_pred             HHHHHHhcccHHHHHHHHHhc----CCHHHHHHHHHHHHHHh
Confidence            999999999999987665443    44666665555555543

>PRK10941 hypothetical protein; Provisional

Probab=96.25  E-value=0.063  Score=42.46  Aligned_cols=78  Identities=12%  Similarity=-0.104  Sum_probs=66.2

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ..-+.+.-..+.+.+++..|+..-...+.+.|+++.               -+.-+|.+|.++|.+..|+.+++.-++.+
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~---------------e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPY---------------EIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            344556667788999999999999999999988775               37889999999999999999999999999


Q ss_pred             CCchHHHHHHHHH
Q 028390          140 PLNVKALYRRSQA  152 (209)
Q Consensus       140 p~~~~~~~~~a~~  152 (209)
                      |+.+.+-.-+..+
T Consensus       246 P~dp~a~~ik~ql  258 (269)
T PRK10941        246 PEDPISEMIRAQI  258 (269)
T ss_pred             CCchhHHHHHHHH
Confidence            9998876555443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=96.22  E-value=0.033  Score=44.11  Aligned_cols=72  Identities=18%  Similarity=0.148  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 028390           98 DDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRA  169 (209)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  169 (209)
                      +++++.+.++...++...|..|...|.+.+|++.+++++.++|-+...+.-+-.++..+||--.|...|++.
T Consensus       268 edererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         268 EDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            467788899999999999999999999999999999999999999999999999999999988888877665

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.22  E-value=0.01  Score=32.12  Aligned_cols=29  Identities=28%  Similarity=0.233  Sum_probs=20.9

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+++++|.+|..+|++++|+..+.+++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45677777777778888887777777754

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.14  E-value=0.029  Score=48.42  Aligned_cols=120  Identities=12%  Similarity=0.043  Sum_probs=92.6

Q ss_pred             HcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHH
Q 028390           72 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQ  151 (209)
Q Consensus        72 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~  151 (209)
                      -+|+..+|+.+|..|+.+.+....             -.+...+|.+..+.|...+|--.+.-|+.--|.-...+|.++.
T Consensus       225 ~~G~~~~A~~Ca~~a~hf~~~h~k-------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~  291 (886)
T KOG4507|consen  225 IKGEPYQAVECAMRALHFSSRHNK-------------DIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGN  291 (886)
T ss_pred             HcCChhhhhHHHHHHhhhCCcccc-------------cchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHH
Confidence            479999999999999998766433             2368899999999999999988887777766666677999999


Q ss_pred             HHhccCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          152 AHLKTSELEKAEADIKRALTIDPNNR---VVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       152 ~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      ++..++++......|..+.+..|.-.   ......-.|..++.+.-+++.+-.+.|
T Consensus       292 i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~  347 (886)
T KOG4507|consen  292 IYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRT  347 (886)
T ss_pred             HHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988642   223444455555555555555544444

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=96.10  E-value=0.11  Score=35.79  Aligned_cols=119  Identities=14%  Similarity=0.045  Sum_probs=81.2

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH----hh
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV----LE  137 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a----l~  137 (209)
                      .+...|+..++.+++-.|+-+|++|+.+...-....+.+.++.-...+....|+|..|..+|+.+-.++++.-|    +.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            34568999999999999999999999987665333334445555556667899999999999999999888654    45


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      +-|..+..-+.  .-...+|....|+-+|   ++..| ||.+.+....+
T Consensus        83 LiPQCp~~~C~--afi~sLGCCk~ALl~F---~KRHP-NP~iA~~vq~i  125 (140)
T PF10952_consen   83 LIPQCPNTECE--AFIDSLGCCKKALLDF---MKRHP-NPEIARLVQHI  125 (140)
T ss_pred             hccCCCCcchH--HHHHhhhccHHHHHHH---HHhCC-CHHHHHHHHhc
Confidence            55554332111  0123566667776665   56667 46665555443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.08  E-value=0.21  Score=42.45  Aligned_cols=157  Identities=15%  Similarity=0.128  Sum_probs=97.6

Q ss_pred             cCCCCCCceEEEEEEEcccccCCC----CCC-CCHHHHHHHHHHHHHHhHH----HH-----HcCCHHHHHHHHHHHHHH
Q 028390           24 SELVSADSVLHYEVTLIDFTKEKP----FWK-MDTHEKIEACERKKHDGNL----LF-----RAGKYWRASKKYEKAAKI   89 (209)
Q Consensus        24 ~~~ip~~~~l~~~~~l~~~~~~~~----~~~-~~~~~~~~~a~~~~~~g~~----~~-----~~~~~~~A~~~y~~al~~   89 (209)
                      +..-..+.+-.|..+--....+.+    .|. -+...+.+.|..-.+.-..    +.     ...-..+|..+|.+|++.
T Consensus       150 MNLSAQDHQtfFtcd~D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkA  229 (539)
T PF04184_consen  150 MNLSAQDHQTFFTCDTDALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKA  229 (539)
T ss_pred             CCccccccceeEecCCCccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHH
Confidence            333444445555544444433222    232 2555566655544333321    21     133478899999999987


Q ss_pred             HhhcCCCCh----------HHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC--chHHHHHHHHHHhccC
Q 028390           90 IEFHHSFTD----------DEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL--NVKALYRRSQAHLKTS  157 (209)
Q Consensus        90 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~  157 (209)
                      ....-....          ....+.-....-+-..+|.|..++|+.++|++.+...++..|.  +...++++..++..++
T Consensus       230 gE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq  309 (539)
T PF04184_consen  230 GEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQ  309 (539)
T ss_pred             HHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcC
Confidence            554322111          0001111223445678999999999999999999999987665  5678999999999999


Q ss_pred             CHHHHHHHHHHHHhc-CCCCHHHH
Q 028390          158 ELEKAEADIKRALTI-DPNNRVVK  180 (209)
Q Consensus       158 ~~~~A~~~~~~a~~l-~p~~~~~~  180 (209)
                      .+.++...+.+.-.. -|....+-
T Consensus       310 ~Yad~q~lL~kYdDi~lpkSAti~  333 (539)
T PF04184_consen  310 AYADVQALLAKYDDISLPKSATIC  333 (539)
T ss_pred             CHHHHHHHHHHhccccCCchHHHH
Confidence            999999998887544 24444443

The molecular function of this protein is uncertain.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.03  E-value=0.17  Score=47.95  Aligned_cols=77  Identities=17%  Similarity=0.266  Sum_probs=53.3

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC--chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPL--NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      .|...+...+...+-+.|...+.+|+..=|.  +....-..|..=++.||-+.+...|+-.+.-+|.-.+.|..+.+..
T Consensus      1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence            5666677777777777777777777777666  6666667777777777777777777777777776666666555443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.03  E-value=0.16  Score=34.86  Aligned_cols=76  Identities=14%  Similarity=0.094  Sum_probs=60.6

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+-++-..+..+...|+|++++..-..++.+++......+++    ..+++.+-+++|..+-.+|..++|+..+..+-++
T Consensus        54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde----GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE----GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc----chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            355666777888899999999999999999998876654433    4678889999999999999999999999988654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.94  E-value=0.44  Score=40.20  Aligned_cols=137  Identities=7%  Similarity=0.083  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHhHHHHHcCC-HHHHHHHHHHHHHHHhhcCCCC---------------------h----HHH-------
Q 028390           55 EKIEACERKKHDGNLLFRAGK-YWRASKKYEKAAKIIEFHHSFT---------------------D----DEK-------  101 (209)
Q Consensus        55 ~~~~~a~~~~~~g~~~~~~~~-~~~A~~~y~~al~~~~~~~~~~---------------------~----~~~-------  101 (209)
                      ++.+.++-+..-|..+.+.|. -++|++....++...+.+....                     .    ++.       
T Consensus       374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~  453 (549)
T PF07079_consen  374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT  453 (549)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence            456778888888888898888 6778887777776544432100                     0    000       


Q ss_pred             -HHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCHHH
Q 028390          102 -HQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID-PNNRVV  179 (209)
Q Consensus       102 -~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~-p~~~~~  179 (209)
                       ....+....=+..=|...+..|+|.+|.-+..=+.++.| ++.++-.+|.|++...+|++|-.++.....-+ -.|..+
T Consensus       454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskv  532 (549)
T PF07079_consen  454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKV  532 (549)
T ss_pred             cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHH
Confidence             001111122234456677789999999999999999999 89999999999999999999998886543210 124677


Q ss_pred             HHHHHHHHHHHHH
Q 028390          180 KLVYMELKDKQRE  192 (209)
Q Consensus       180 ~~~l~~l~~~~~~  192 (209)
                      .+++..|++.+.+
T Consensus       533 qKAl~lCqKh~~k  545 (549)
T PF07079_consen  533 QKALALCQKHLPK  545 (549)
T ss_pred             HHHHHHHHHhhhh
Confidence            7778888776643

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.87  E-value=0.11  Score=34.14  Aligned_cols=64  Identities=17%  Similarity=0.172  Sum_probs=44.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           69 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        69 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      ...+.|+|..|++.+.+.............      ......+..++|.++...|++++|+..+.+++++
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            456789999999999999887655332100      1123345677778888888888888888887765

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.83  E-value=0.014  Score=44.65  Aligned_cols=61  Identities=18%  Similarity=0.275  Sum_probs=54.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCch
Q 028390           68 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV  143 (209)
Q Consensus        68 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  143 (209)
                      ....+.++.+.|.+.|++++.+.|.+..               -|..+|....+.|+++.|...|.++++++|.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~---------------gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAA---------------GWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhh---------------hhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3456789999999999999999888765               589999999999999999999999999998763

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.79  E-value=0.42  Score=45.49  Aligned_cols=118  Identities=21%  Similarity=0.119  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390           55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK  134 (209)
Q Consensus        55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  134 (209)
                      ++++.-.++.+.=+.+   |.-+.-.+.|.+|.+++..                -.+|..++.+|.+-+++++|.+.++.
T Consensus      1495 EKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd~----------------~~V~~~L~~iy~k~ek~~~A~ell~~ 1555 (1710)
T KOG1070|consen 1495 EKLNIWIAYLNLENAY---GTEESLKKVFERACQYCDA----------------YTVHLKLLGIYEKSEKNDEADELLRL 1555 (1710)
T ss_pred             HHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcch----------------HHHHHHHHHHHHHhhcchhHHHHHHH
Confidence            3444444444443333   4555566667777776433                24689999999999999999999999


Q ss_pred             HhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHH
Q 028390          135 VLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYMELKDKQR  191 (209)
Q Consensus       135 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~l~~~~~  191 (209)
                      -+.-.....+.|...|..+...++-+.|...+.+|++.-|.  +.+.....+.+.-...
T Consensus      1556 m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1556 MLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred             HHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence            88876688999999999999999999999999999999997  5666666666654443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.78  E-value=0.39  Score=38.20  Aligned_cols=103  Identities=17%  Similarity=0.147  Sum_probs=75.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHh-hcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-CHHHHHHHHHHHhhh----CC---
Q 028390           70 LFRAGKYWRASKKYEKAAKIIE-FHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLEL----EP---  140 (209)
Q Consensus        70 ~~~~~~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~----~p---  140 (209)
                      ..+.|+++.|...|.++-.+.+ .++.        .-......++|.|......+ +++.|+..++++.++    .+   
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~--------~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~   74 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPD--------MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK   74 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcH--------HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc
Confidence            3578999999999999988763 2222        12456778999999999999 999999999999887    21   


Q ss_pred             Cc-------hHHHHHHHHHHhccCCHHH---HHHHHHHHHhcCCCCHHHH
Q 028390          141 LN-------VKALYRRSQAHLKTSELEK---AEADIKRALTIDPNNRVVK  180 (209)
Q Consensus       141 ~~-------~~~~~~~a~~~~~~~~~~~---A~~~~~~a~~l~p~~~~~~  180 (209)
                      ..       ...+..++.+|...+.++.   |...++.+..-.|+.+.+.
T Consensus        75 ~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   75 LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence            11       3456778999999887664   4444445545567766655

It is also involved in sporulation [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.74  E-value=0.6  Score=37.90  Aligned_cols=127  Identities=17%  Similarity=0.085  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+..+...+..+.+.|.++.|...+.++....+.....           ...+....+......|+..+|+..+...+.
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            446678888999999999999999999988765332210           123577788888899999999998888776


Q ss_pred             h--C-C-------------------------------CchHHHHHHHHHHhcc------CCHHHHHHHHHHHHhcCCCCH
Q 028390          138 L--E-P-------------------------------LNVKALYRRSQAHLKT------SELEKAEADIKRALTIDPNNR  177 (209)
Q Consensus       138 ~--~-p-------------------------------~~~~~~~~~a~~~~~~------~~~~~A~~~~~~a~~l~p~~~  177 (209)
                      .  . +                               ...++++.+|.-...+      ++.+.+...|..+.+++|...
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  292 (352)
T PF02259_consen  213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE  292 (352)
T ss_pred             HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence            1  1 0                               0145677777777777      889999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 028390          178 VVKLVYMELKDKQREYAK  195 (209)
Q Consensus       178 ~~~~~l~~l~~~~~~~~~  195 (209)
                      .++..++.....+-....
T Consensus       293 k~~~~~a~~~~~~~~~~~  310 (352)
T PF02259_consen  293 KAWHSWALFNDKLLESDP  310 (352)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            888888887776644443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.72  E-value=0.48  Score=38.46  Aligned_cols=116  Identities=19%  Similarity=0.117  Sum_probs=84.9

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHH-HHhhcCCCC------------------hHHHHHHHHHHHHHHhHHHHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAK-IIEFHHSFT------------------DDEKHQANGLRLSCYLNNAACKL  120 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~a~~~~  120 (209)
                      .....+.+..+...|+..+|+......+. .........                  .............++..+|....
T Consensus       184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~  263 (352)
T PF02259_consen  184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD  263 (352)
T ss_pred             cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence            34456788899999999999999998888 333221100                  00123345566788888888888


Q ss_pred             hh------cCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCH-----------------HHHHHHHHHHHhcCCC
Q 028390          121 KL------EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL-----------------EKAEADIKRALTIDPN  175 (209)
Q Consensus       121 ~~------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~-----------------~~A~~~~~~a~~l~p~  175 (209)
                      ..      +.+++++..|..++.++|.+.++++..|..+..+=+.                 ..|+..|-+++.+.|.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            88      9999999999999999999999999998877655322                 2377777777777766

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.69  E-value=0.16  Score=41.64  Aligned_cols=106  Identities=17%  Similarity=0.118  Sum_probs=82.5

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC--
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE--  139 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--  139 (209)
                      .+...|..+-..+++++|+.+-.+|..+.....-.   ++  ....+..+.+.++..+..+|....|.+.|+++.++-  
T Consensus       164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~---d~--~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~  238 (518)
T KOG1941|consen  164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK---DW--SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ  238 (518)
T ss_pred             hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC---ch--hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            35567777888899999999999999887654311   11  113345567889999999999999999999987662  


Q ss_pred             ----CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          140 ----PLNVKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       140 ----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                          +-....+..+|.+|...|+.+.|..-|+.|+..
T Consensus       239 ~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  239 HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT  275 (518)
T ss_pred             hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence                233555677899999999999999999999865

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.66  E-value=0.77  Score=35.78  Aligned_cols=128  Identities=18%  Similarity=0.121  Sum_probs=82.7

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-  138 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-  138 (209)
                      +..+...++.+...++|++|...+.+|+.......+..         --+.+|-..+.....+..|.++...++++..+ 
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf---------hAAKayEqaamLake~~klsEvvdl~eKAs~lY  101 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF---------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            44455666777778899999999999986655443311         02345667777777888888888888888765 


Q ss_pred             ----CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHHHHH
Q 028390          139 ----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       139 ----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~l~~~~~~~~~~  196 (209)
                          .|+....-..+|-=.....+.++|++.|.+++.+-..+      .+....++++.-+++++.+.
T Consensus       102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea  169 (308)
T KOG1585|consen  102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA  169 (308)
T ss_pred             HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence                24433334444444556678888999999888764322      23333445555566666554

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.57  E-value=0.18  Score=46.55  Aligned_cols=122  Identities=9%  Similarity=-0.041  Sum_probs=91.1

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh-------cCHHHHHHHHHHH
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-------EDYSETSSLCTKV  135 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-------~~~~~A~~~~~~a  135 (209)
                      +..-.+.+...+.|+.|+..|++...-+|.....            -.+.+..|...+..       ..+.+|+..+++.
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (932)
T PRK13184        478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEG------------YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL  545 (932)
T ss_pred             cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc------------hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence            4456778888899999999999998888875543            12345555555432       2466666666554


Q ss_pred             hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028390          136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ  197 (209)
Q Consensus       136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~  197 (209)
                       .-.|.-+--|...|.+|..+|++++-++.|.-|++..|.+|.+......+-.|+.+.--+.
T Consensus       546 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (932)
T PRK13184        546 -HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH  606 (932)
T ss_pred             -cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH
Confidence             2345556678999999999999999999999999999999999888888777776654433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.57  E-value=0.26  Score=35.72  Aligned_cols=79  Identities=13%  Similarity=0.054  Sum_probs=40.8

Q ss_pred             HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      +.....+-...++.+.+...+.-+--+.|..+..-..-|..+...|+|.+|+..|+.+..-.|..+-+...++.|...+
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~   91 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL   91 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence            3444444444455555555554444555555555555555555555555555555555555555555555555544433

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.48  E-value=0.96  Score=38.60  Aligned_cols=99  Identities=22%  Similarity=0.253  Sum_probs=74.7

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +.-..-.|.-...-+.|+.|...|..|++....            .++.+-+-.|+|.+|+..++-+.-.+.++.   +.
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~  431 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAEDLYKALDL---IG  431 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cC
Confidence            334455666667778999999999999987543            245666789999999998876554333333   34


Q ss_pred             CCc----------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390          140 PLN----------VKALYRRSQAHLKTSELEKAEADIKRALTID  173 (209)
Q Consensus       140 p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~  173 (209)
                      |.|          ..++|..|...+.++++.+|...+.+.++..
T Consensus       432 p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  432 PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            443          3568889999999999999999999999876

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.47  E-value=0.26  Score=42.32  Aligned_cols=70  Identities=10%  Similarity=0.042  Sum_probs=58.0

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV  179 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~  179 (209)
                      ......|.++...|+.++|++.+++++......    .-.++.+|.++..+.+|++|..++.+..+.+.-+...
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~  341 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAF  341 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHH
Confidence            357889999999999999999999998644333    3457889999999999999999999999877654433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.45  E-value=0.038  Score=29.77  Aligned_cols=30  Identities=27%  Similarity=0.209  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          143 VKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                      ..++.++|.+|..+|++++|...+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            356889999999999999999999999875

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.31  E-value=0.32  Score=31.82  Aligned_cols=56  Identities=20%  Similarity=0.257  Sum_probs=45.7

Q ss_pred             HHhhcCHHHHHHHHHHHhhhCCC---------chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 028390          119 KLKLEDYSETSSLCTKVLELEPL---------NVKALYRRSQAHLKTSELEKAEADIKRALTIDP  174 (209)
Q Consensus       119 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p  174 (209)
                      ....|+|..|++.+.+..+....         ...+++++|.++...|++++|+..+++++.+..
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            45789999998888887765321         246788999999999999999999999998843

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.17  E-value=0.029  Score=47.47  Aligned_cols=93  Identities=12%  Similarity=0.032  Sum_probs=68.7

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHH-HHhhcCCC-Ch-HHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAK-IIEFHHSF-TD-DEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~-~~~~~~~~-~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +.+.|..+|+.|.|..+..+|.+|++ .+..-... .+ -.......-.-.+.+|.|..|+..|++-.|.+.+.++...-
T Consensus       286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf  365 (696)
T KOG2471|consen  286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF  365 (696)
T ss_pred             ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence            45788899999999999999999996 32211000 00 00000011122368999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhc
Q 028390          140 PLNVKALYRRSQAHLK  155 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~  155 (209)
                      ..++..|.|+|.|.+.
T Consensus       366 h~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  366 HRNPRLWLRLAECCIM  381 (696)
T ss_pred             hcCcHHHHHHHHHHHH
Confidence            9999999999998764

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.08  E-value=0.96  Score=33.43  Aligned_cols=65  Identities=11%  Similarity=0.049  Sum_probs=57.2

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                      ...++..+|..|.+.|+++.|++.|.++.+.+...   ...++++-.+....++|.....++.++-.+
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45679999999999999999999999988876443   677899999999999999999999999776

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.70  E-value=0.28  Score=31.95  Aligned_cols=48  Identities=15%  Similarity=-0.000  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390           80 SKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        80 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      +..+.+++...|.+.               .+.+.+|..++..|++++|++.+..++..++++
T Consensus         8 ~~al~~~~a~~P~D~---------------~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALAANPDDL---------------DARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHSTT-H---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            455667777666543               478999999999999999999999999999887

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.51  E-value=0.078  Score=28.57  Aligned_cols=29  Identities=24%  Similarity=0.304  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          144 KALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                      +++..+|.+-...++|+.|+.+|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35667777777777777777777777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.50  E-value=0.15  Score=27.10  Aligned_cols=33  Identities=15%  Similarity=0.113  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHhccCCHHHHHHH--HHHHHhcCCCC
Q 028390          144 KALYRRSQAHLKTSELEKAEAD--IKRALTIDPNN  176 (209)
Q Consensus       144 ~~~~~~a~~~~~~~~~~~A~~~--~~~a~~l~p~~  176 (209)
                      +.++.+|-.++..|++++|+..  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            3456666666677777777766  44555555543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.45  E-value=0.24  Score=38.90  Aligned_cols=62  Identities=15%  Similarity=0.028  Sum_probs=52.1

Q ss_pred             HHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          128 TSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       128 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      |..+|..|+.+.|.+...|..+|.+....|+.-.|+-+|-+++-.....+.+...+..+-+.
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999997755558888888877766

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=94.44  E-value=0.19  Score=28.06  Aligned_cols=25  Identities=16%  Similarity=0.259  Sum_probs=19.8

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          147 YRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       147 ~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      +.+|.+|..+|+.+.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5678888888888888888888874

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.44  E-value=1.2  Score=33.50  Aligned_cols=96  Identities=14%  Similarity=0.124  Sum_probs=66.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHH------HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC-ch--H
Q 028390           74 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQAN------GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL-NV--K  144 (209)
Q Consensus        74 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~--~  144 (209)
                      ++...|-..|.+++..............+++.      .+-...-..+|..+...+++++|+..+..++....+ +.  -
T Consensus        48 ~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l  127 (207)
T COG2976          48 EQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL  127 (207)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH
Confidence            44557888899988876543332111222221      222334567788889999999999999999865433 33  3


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHH
Q 028390          145 ALYRRSQAHLKTSELEKAEADIKRA  169 (209)
Q Consensus       145 ~~~~~a~~~~~~~~~~~A~~~~~~a  169 (209)
                      +-.|+|.++..+|.+++|+..+...
T Consensus       128 ~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976         128 AALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            5688999999999999999887654

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.35  E-value=0.086  Score=42.25  Aligned_cols=76  Identities=18%  Similarity=0.295  Sum_probs=65.3

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHH-HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYR-RSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      +|...+....+.|.|.+--..|..+++..|.|++.|.. -+.-+...++++.+...+.+++.++|++|.++.+.-+.
T Consensus       109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~  185 (435)
T COG5191         109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM  185 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence            46666666677888999999999999999999999877 56678889999999999999999999999988766554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.35  E-value=0.5  Score=36.11  Aligned_cols=83  Identities=14%  Similarity=0.055  Sum_probs=51.2

Q ss_pred             HHHHHHHhHHHHHcCCH-------HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHH
Q 028390           60 CERKKHDGNLLFRAGKY-------WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC  132 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~-------~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  132 (209)
                      |..+...|-.+...|+.       ..|+..|.+|+........ .        -....+.+-+|..+.++|++++|+..+
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~-~--------~~~~~l~YLigeL~rrlg~~~eA~~~f  188 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIE-G--------MDEATLLYLIGELNRRLGNYDEAKRWF  188 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCC-C--------chHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            44444455555555664       4455555555553322111 1        112447789999999999999999999


Q ss_pred             HHHhhhCCCch-HHHHHHHH
Q 028390          133 TKVLELEPLNV-KALYRRSQ  151 (209)
Q Consensus       133 ~~al~~~p~~~-~~~~~~a~  151 (209)
                      .+++.....+. ..+..+|.
T Consensus       189 s~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  189 SRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHcCCCCCCcHHHHHHHH
Confidence            99998654433 35555554

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.33  E-value=0.34  Score=42.55  Aligned_cols=74  Identities=19%  Similarity=0.166  Sum_probs=61.6

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  184 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  184 (209)
                      ++-|-|.-.++..+|..+++.|...+..-|.+      .+..-.++.||..+.+.+.|..++..|-+.+|.++-......
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~  435 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML  435 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            44566778889999999999999999876544      566777899999999999999999999999998876555443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.28  E-value=0.075  Score=28.64  Aligned_cols=29  Identities=21%  Similarity=0.256  Sum_probs=26.7

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +|..+|.+-+..++|++|+.+|.+++.+.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            68899999999999999999999999763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.11  E-value=0.48  Score=42.97  Aligned_cols=76  Identities=7%  Similarity=0.055  Sum_probs=69.0

Q ss_pred             hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      ..++|.+|+..+.++++..|+..-+....|..+.++|..++|...++..-.+-++|......+..|++++++..+.
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence            4578999999999999999999999999999999999999999888777777888999999999999999887654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.10  E-value=2.2  Score=33.15  Aligned_cols=106  Identities=21%  Similarity=0.128  Sum_probs=74.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ++.+...|+.+--.+.|..|=..|-++-.+--...+.         ......|...+.||.+ .+..+|+..+++++++-
T Consensus        34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~sk---------hDaat~YveA~~cykk-~~~~eAv~cL~~aieIy  103 (288)
T KOG1586|consen   34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSK---------HDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIY  103 (288)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCc---------hhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHH
Confidence            4444455555555677888888888887654332221         2235578888888854 49999999999999875


Q ss_pred             CCc------hHHHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCC
Q 028390          140 PLN------VKALYRRSQAHLKT-SELEKAEADIKRALTIDPN  175 (209)
Q Consensus       140 p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~l~p~  175 (209)
                      .+-      .+-+..+|..|..- .+++.|+.+|+.+-+....
T Consensus       104 t~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~  146 (288)
T KOG1586|consen  104 TDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG  146 (288)
T ss_pred             HhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence            432      34456788888766 8999999999999877543

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=94.02  E-value=0.72  Score=28.93  Aligned_cols=36  Identities=17%  Similarity=0.152  Sum_probs=31.2

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH   93 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~   93 (209)
                      +.+..+..+|..+-+.|++.+|+.+|++|++.+..-
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~   39 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI   39 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            346677889999999999999999999999987653

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=93.95  E-value=0.42  Score=39.56  Aligned_cols=103  Identities=20%  Similarity=0.212  Sum_probs=73.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhcCCCChHHH--HHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh---------hh----
Q 028390           74 GKYWRASKKYEKAAKIIEFHHSFTDDEK--HQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL---------EL----  138 (209)
Q Consensus        74 ~~~~~A~~~y~~al~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al---------~~----  138 (209)
                      ..|.++-..|..++.....     +...  -+..+.++..+..++.++..+|+.+.|.+.+++||         .+    
T Consensus         8 ~~Y~~~q~~F~~~v~~~Dp-----~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~   82 (360)
T PF04910_consen    8 KAYQEAQEQFYAAVQSHDP-----NALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFR   82 (360)
T ss_pred             HHHHHHHHHHHHHHHccCH-----HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3456666666666653211     0011  11233467789999999999999999999999987         22    


Q ss_pred             -C------------CCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CHHHHH
Q 028390          139 -E------------PLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPN-NRVVKL  181 (209)
Q Consensus       139 -~------------p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~  181 (209)
                       +            +.|   ..++++....+.+.|.+..|.++.+-.+.++|. |+-...
T Consensus        83 ~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~l  142 (360)
T PF04910_consen   83 SNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVL  142 (360)
T ss_pred             cccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhH
Confidence             1            112   457788899999999999999999999999998 764443

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=93.92  E-value=4.4  Score=36.07  Aligned_cols=108  Identities=20%  Similarity=0.085  Sum_probs=84.6

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcC-------CCC----hHHHHHHHHHHHHHHhHHHHHHHhhcCHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH-------SFT----DDEKHQANGLRLSCYLNNAACKLKLEDYSET  128 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A  128 (209)
                      +..+.--|......+..++|.+++.+|++......       ..+    .+.......+...+....+.+.+-+++|..|
T Consensus       301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a  380 (608)
T PF10345_consen  301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA  380 (608)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            55566678888889988899999999998876644       111    1223345566777888999999999999999


Q ss_pred             HHHHHHHhhhC---C------CchHHHHHHHHHHhccCCHHHHHHHHH
Q 028390          129 SSLCTKVLELE---P------LNVKALYRRSQAHLKTSELEKAEADIK  167 (209)
Q Consensus       129 ~~~~~~al~~~---p------~~~~~~~~~a~~~~~~~~~~~A~~~~~  167 (209)
                      ......+....   |      ..+..+|-.|..+...|+.+.|...|.
T Consensus       381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            99888777553   2      237778999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.91  E-value=0.4  Score=39.03  Aligned_cols=93  Identities=9%  Similarity=-0.020  Sum_probs=62.6

Q ss_pred             HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH
Q 028390           65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK  144 (209)
Q Consensus        65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  144 (209)
                      ---..+|..|....-...+.+.+-.-+.+-           +...-+.--.+.+....|-|++|.+...++++++|.+.-
T Consensus       142 fsh~a~fy~G~~~~~k~ai~kIip~wn~dl-----------p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~W  210 (491)
T KOG2610|consen  142 FSHDAHFYNGNQIGKKNAIEKIIPKWNADL-----------PCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCW  210 (491)
T ss_pred             hhhhHHHhccchhhhhhHHHHhccccCCCC-----------cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchH
Confidence            334455566666666666666554311111           112234455677888999999999999999999998887


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHH
Q 028390          145 ALYRRSQAHLKTSELEKAEADIKR  168 (209)
Q Consensus       145 ~~~~~a~~~~~~~~~~~A~~~~~~  168 (209)
                      +...++-++...+++.++.+++.+
T Consensus       211 a~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  211 ASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHHHHHHHHHhcchhhhHHHHHHh
Confidence            777777777777777777665543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.81  E-value=1.8  Score=31.34  Aligned_cols=113  Identities=10%  Similarity=-0.058  Sum_probs=81.8

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+.+........++.+++...+...-.+-|..+               .+-..-|..++..|+|.+|+..+..+..-.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~---------------e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~   74 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFP---------------ELDLFDGWLHIVRGDWDDALRLLRELEERA   74 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCch---------------HHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence            44566777777888899998888776555544433               356788899999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      |..+-+---++.|++.++|.+== .+-..+++-.+ ++.+......+..+
T Consensus        75 ~~~p~~kALlA~CL~~~~D~~Wr-~~A~evle~~~-d~~a~~Lv~~Ll~~  122 (160)
T PF09613_consen   75 PGFPYAKALLALCLYALGDPSWR-RYADEVLESGA-DPDARALVRALLAR  122 (160)
T ss_pred             CCChHHHHHHHHHHHHcCChHHH-HHHHHHHhcCC-ChHHHHHHHHHHHh
Confidence            98888888889999999986421 12233444443 56666666655443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.78  E-value=1.1  Score=31.67  Aligned_cols=75  Identities=24%  Similarity=0.228  Sum_probs=53.2

Q ss_pred             HHHHHhHHHHHcC---CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           62 RKKHDGNLLFRAG---KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        62 ~~~~~g~~~~~~~---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      ..++.+..+.++.   +.++.+..+...+.-  .++.           -.-...+.+|.-+.++++|+.++.+++..++.
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~-----------~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~  100 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPE-----------RRRECLYYLAVGHYRLKEYSKSLRYVDALLET  100 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcc-----------cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence            3456666666554   445677777776651  1111           12346788889999999999999999999999


Q ss_pred             CCCchHHHHHH
Q 028390          139 EPLNVKALYRR  149 (209)
Q Consensus       139 ~p~~~~~~~~~  149 (209)
                      +|+|..+.-..
T Consensus       101 e~~n~Qa~~Lk  111 (149)
T KOG3364|consen  101 EPNNRQALELK  111 (149)
T ss_pred             CCCcHHHHHHH
Confidence            99998875443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.72  E-value=0.31  Score=38.33  Aligned_cols=62  Identities=16%  Similarity=0.051  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhc
Q 028390           79 ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK  155 (209)
Q Consensus        79 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~  155 (209)
                      |..+|.+|+.+.|..+.               .|+.+|.++...|+.=.|+-+|-+++-...+.+.+.-++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~---------------p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGN---------------PYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSH---------------HHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCC---------------cccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78899999999998775               699999999999999999999999998776678888888888777

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=93.68  E-value=0.91  Score=35.45  Aligned_cols=63  Identities=21%  Similarity=0.154  Sum_probs=33.1

Q ss_pred             HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      .+.|..++..|+|++|+..|..+........-         ..+...+...+..|+..+|+.+..+..+-+.
T Consensus       182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW---------~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGW---------WSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            35555566666666666666665443332221         2344445555556666666665555555443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.61  E-value=2.8  Score=35.05  Aligned_cols=103  Identities=20%  Similarity=0.186  Sum_probs=72.3

Q ss_pred             HcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHH
Q 028390           72 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQ  151 (209)
Q Consensus        72 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~  151 (209)
                      ..|+|+.|+..........--.       +...+.....++...+..... -+...|..+...++++.|+...+-.--+.
T Consensus       200 ~~gdWd~AlkLvd~~~~~~vie-------~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAr  271 (531)
T COG3898         200 AAGDWDGALKLVDAQRAAKVIE-------KDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAAR  271 (531)
T ss_pred             hcCChHHHHHHHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHH
Confidence            4456666655554443321111       112234455566666665543 45889999999999999999999999999


Q ss_pred             HHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390          152 AHLKTSELEKAEADIKRALTIDPNNRVVKLVY  183 (209)
Q Consensus       152 ~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  183 (209)
                      +++..|+..++-..++.+-+.+|. +.+...+
T Consensus       272 alf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY  302 (531)
T COG3898         272 ALFRDGNLRKGSKILETAWKAEPH-PDIALLY  302 (531)
T ss_pred             HHHhccchhhhhhHHHHHHhcCCC-hHHHHHH
Confidence            999999999999999999999885 4444443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.48  E-value=3  Score=38.25  Aligned_cols=126  Identities=18%  Similarity=0.230  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh-------hcCHHHH
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-------LEDYSET  128 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~~~A  128 (209)
                      ++.........|..+...|++.+|++.|..+|-..|-.-....++....+++.......+...-..       ....+.+
T Consensus       987 ~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~ 1066 (1202)
T KOG0292|consen  987 KLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQ 1066 (1202)
T ss_pred             cHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHH
Confidence            355666777899999999999999999999998766544444445555555555543333222222       2234444


Q ss_pred             --HHHHHHHhhhCCCchHHHHHHH-HHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 028390          129 --SSLCTKVLELEPLNVKALYRRS-QAHLKTSELEKAEADIKRALTIDPNNRVVKL  181 (209)
Q Consensus       129 --~~~~~~al~~~p~~~~~~~~~a-~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~  181 (209)
                        +..|-.-..+.|.+.-.-.+.| .++++++++..|.....+.+++.|..+.+..
T Consensus      1067 ~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1067 LELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred             HHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence              3344444566777655555555 6899999999999999999999997665543

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.45  E-value=1.2  Score=28.03  Aligned_cols=35  Identities=17%  Similarity=0.186  Sum_probs=30.6

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   92 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~   92 (209)
                      ..+..+...|..+-+.|+|.+|+.+|..|++++..
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            34667788999999999999999999999998765

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.37  E-value=1.3  Score=28.13  Aligned_cols=66  Identities=15%  Similarity=0.038  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCC------ChHHHHHHHHHHHHHHhHHHHHHHhh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF------TDDEKHQANGLRLSCYLNNAACKLKL  122 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~  122 (209)
                      .+.|-.+.+.|..+-..|+.+.|+.+|.+++..+......      ..++|+....+....-.+++.+-..+
T Consensus         5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL   76 (79)
T cd02679           5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL   76 (79)
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567778899999999999999999999999988653322      33667777777777767666665443

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=93.18  E-value=0.4  Score=29.38  Aligned_cols=35  Identities=17%  Similarity=0.109  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   92 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~   92 (209)
                      ..+..+...|..+-..|++++|+.+|.+|+..+..
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   37 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ   37 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            34667778999999999999999999999988654

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.17  E-value=0.56  Score=38.99  Aligned_cols=112  Identities=13%  Similarity=0.090  Sum_probs=83.2

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC--
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE--  139 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--  139 (209)
                      .+.+.|..+...|+++.|+..|.++-.+..+...            .+..+.|.-.+-..+|+|.....+..++..--  
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh------------vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~  219 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH------------VINMCLNLILVSIYMGNWGHVLSYISKAESTPDA  219 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH------------HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence            3667888899999999999999998777665433            35578888888889999999988888887652  


Q ss_pred             ------CCchHHHHHHHHHHhccCCHHHHHHHHHHHHh--------cCCCCHHHHHHHHH
Q 028390          140 ------PLNVKALYRRSQAHLKTSELEKAEADIKRALT--------IDPNNRVVKLVYME  185 (209)
Q Consensus       140 ------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--------l~p~~~~~~~~l~~  185 (209)
                            .-.++..+.-|.+...++++..|.+++-.+.-        +.|.|..+.-.+.-
T Consensus       220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcA  279 (466)
T KOG0686|consen  220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCA  279 (466)
T ss_pred             hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHh
Confidence                  11255677888899999999999988866532        13555555444443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.05  E-value=5.3  Score=34.34  Aligned_cols=100  Identities=21%  Similarity=0.194  Sum_probs=80.0

Q ss_pred             HHHHHHHHhHHHH-HcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-CHHHHHHHHHHHh
Q 028390           59 ACERKKHDGNLLF-RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVL  136 (209)
Q Consensus        59 ~a~~~~~~g~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al  136 (209)
                      .+......|..++ ....++.|..+..+|..+...-+.|.        +....++.-++.+|.... .+..|...+.+++
T Consensus        45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--------dvKf~a~SlLa~lh~~~~~s~~~~KalLrkai  116 (629)
T KOG2300|consen   45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--------DVKFQAASLLAHLHHQLAQSFPPAKALLRKAI  116 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--------hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            3555566666554 57899999999999999988777763        456678888999999887 8889999999999


Q ss_pred             hhCCCc----hHHHHHHHHHHhccCCHHHHHHHH
Q 028390          137 ELEPLN----VKALYRRSQAHLKTSELEKAEADI  166 (209)
Q Consensus       137 ~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~  166 (209)
                      ++....    .+.++.++....-..|+..|...+
T Consensus       117 elsq~~p~wsckllfQLaql~~idkD~~sA~elL  150 (629)
T KOG2300|consen  117 ELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL  150 (629)
T ss_pred             HHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence            886554    567788999999999999888765

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.04  E-value=0.16  Score=24.67  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=14.1

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHH
Q 028390          145 ALYRRSQAHLKTSELEKAEADIK  167 (209)
Q Consensus       145 ~~~~~a~~~~~~~~~~~A~~~~~  167 (209)
                      +.+.+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45566666666666666665543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=92.87  E-value=6.6  Score=34.97  Aligned_cols=123  Identities=14%  Similarity=0.106  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhHHHH-HcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           58 EACERKKHDGNLLF-RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        58 ~~a~~~~~~g~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ..+......|..++ ...+++.|..+..+++.+... ..+        .++...+..-++.++.+.+... |...+++.+
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~--------~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I  126 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRL--------TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI  126 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch--------HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence            34667778888888 678999999999999998766 333        3455556667788888887777 999999998


Q ss_pred             hhCCC----chHHHHHHHHH--HhccCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHH
Q 028390          137 ELEPL----NVKALYRRSQA--HLKTSELEKAEADIKRALTID--PNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       137 ~~~p~----~~~~~~~~a~~--~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l~~l~~~~  190 (209)
                      +.-..    .+...|++-.+  +...+|+..|+..++.+..+.  +.++.+...+..+...+
T Consensus       127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l  188 (608)
T PF10345_consen  127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL  188 (608)
T ss_pred             HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence            76444    34444554422  222379999999999998875  46666655554444433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=92.76  E-value=0.74  Score=41.87  Aligned_cols=113  Identities=14%  Similarity=0.053  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHH-------HHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHH
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAA-------KIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS  130 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  130 (209)
                      ..-..+.+.+..+-..++...|+++|.++-       +++.+++..-+.-.....  -..+|.--|+..-..|+.+.|+.
T Consensus       856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~--d~~L~~WWgqYlES~GemdaAl~  933 (1416)
T KOG3617|consen  856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKR--DESLYSWWGQYLESVGEMDAALS  933 (1416)
T ss_pred             ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhcc--chHHHHHHHHHHhcccchHHHHH
Confidence            334456677777777888888888888762       222222210000000000  12467777888888999999999


Q ss_pred             HHHHHhhh---------------------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          131 LCTKVLEL---------------------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       131 ~~~~al~~---------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                      +|..|-+.                     ...+-.+-|.+|.-|...|++.+|+.+|.+|..+
T Consensus       934 ~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  934 FYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             HHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            99887532                     2456778899999999999999999999887654

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=92.65  E-value=1.1  Score=35.22  Aligned_cols=72  Identities=15%  Similarity=-0.017  Sum_probs=60.8

Q ss_pred             HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH
Q 028390           65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK  144 (209)
Q Consensus        65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  144 (209)
                      ..=..+...++++.|...-...+.++|.++.               -+.-+|.+|.++|.+..|+.+++..++..|+.+.
T Consensus       186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~---------------eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~  250 (269)
T COG2912         186 NLKAALLRELQWELALRVAERLLDLNPEDPY---------------EIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI  250 (269)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHhhCCCChh---------------hccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence            3344566789999999999999999888775               2789999999999999999999999999999887


Q ss_pred             HHHHHHH
Q 028390          145 ALYRRSQ  151 (209)
Q Consensus       145 ~~~~~a~  151 (209)
                      +-+-++.
T Consensus       251 a~~ir~~  257 (269)
T COG2912         251 AEMIRAQ  257 (269)
T ss_pred             HHHHHHH
Confidence            7665543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.99  E-value=3.4  Score=29.62  Aligned_cols=83  Identities=7%  Similarity=-0.050  Sum_probs=62.0

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      +.+........++.+++.......--+-|..+.               +-..-|..++..|+|.+|+..+..+.+-.+..
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e---------------~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~   77 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKE---------------LDMFDGWLLIARGNYDEAARILRELLSSAGAP   77 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc---------------cchhHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence            334444445578888887776654444444443               45777889999999999999999999888887


Q ss_pred             hHHHHHHHHHHhccCCHH
Q 028390          143 VKALYRRSQAHLKTSELE  160 (209)
Q Consensus       143 ~~~~~~~a~~~~~~~~~~  160 (209)
                      +-+.-.++.|++.+||.+
T Consensus        78 p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        78 PYGKALLALCLNAKGDAE   95 (153)
T ss_pred             hHHHHHHHHHHHhcCChH
Confidence            877778889999999854

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.86  E-value=3  Score=34.57  Aligned_cols=106  Identities=12%  Similarity=-0.068  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh-cCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF-HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK  134 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  134 (209)
                      -......+......+-++|.+..|++...-.+.++|. |+-.              +..-+-...++.++|+--+..++.
T Consensus        99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g--------------~ll~ID~~ALrs~~y~~Li~~~~~  164 (360)
T PF04910_consen   99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG--------------VLLFIDYYALRSRQYQWLIDFSES  164 (360)
T ss_pred             chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch--------------hHHHHHHHHHhcCCHHHHHHHHHh
Confidence            4555667788888899999999999999999999998 5543              456666666778888877777776


Q ss_pred             HhhhCC-C----chHHHHHHHHHHhccCCH---------------HHHHHHHHHHHhcCCC
Q 028390          135 VLELEP-L----NVKALYRRSQAHLKTSEL---------------EKAEADIKRALTIDPN  175 (209)
Q Consensus       135 al~~~p-~----~~~~~~~~a~~~~~~~~~---------------~~A~~~~~~a~~l~p~  175 (209)
                      ...... .    -+..-|.++.|++.+++-               +.|...+.+|+...|.
T Consensus       165 ~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  165 PLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             HhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            655221 1    235678899999999998               8999999999988875

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.75  E-value=1.6  Score=34.93  Aligned_cols=57  Identities=25%  Similarity=0.313  Sum_probs=49.9

Q ss_pred             HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHH
Q 028390          112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKR  168 (209)
Q Consensus       112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  168 (209)
                      -...+.-....|++.+|...+..++...|.+..+...++.||...|+.+.|...+..
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            345556677899999999999999999999999999999999999999988776643

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.71  E-value=6.6  Score=34.55  Aligned_cols=101  Identities=21%  Similarity=0.133  Sum_probs=74.2

Q ss_pred             HHhHHHHHc----C-CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc---CHHHHHHHHHHHh
Q 028390           65 HDGNLLFRA----G-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE---DYSETSSLCTKVL  136 (209)
Q Consensus        65 ~~g~~~~~~----~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al  136 (209)
                      ..|..+.+.    . ++..|+.+|.+|......                 .+...+|.++..-.   ++..|..+|..|.
T Consensus       293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-----------------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa  355 (552)
T KOG1550|consen  293 GLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-----------------DAQYLLGVLYETGTKERDYRRAFEYYSLAA  355 (552)
T ss_pred             HHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-----------------hHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence            466666663    2 788899999999886322                 25788888887554   6789999999886


Q ss_pred             hhCCCchHHHHHHHHHHhcc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          137 ELEPLNVKALYRRSQAHLKT----SELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       137 ~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      ...  ++.+.+++|.||..-    -+...|..+++++-+..  ++.+...+..+
T Consensus       356 ~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~  405 (552)
T KOG1550|consen  356 KAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAF  405 (552)
T ss_pred             HcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHH
Confidence            654  688899999998765    37889999999999887  33433333333

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.70  E-value=4.3  Score=32.11  Aligned_cols=109  Identities=15%  Similarity=0.036  Sum_probs=86.9

Q ss_pred             HHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh-cCHHHHHHHHHHHhhhCCCchHHHHHH
Q 028390           71 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-EDYSETSSLCTKVLELEPLNVKALYRR  149 (209)
Q Consensus        71 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~  149 (209)
                      .+...-+.|+..-..+|.+.|..-.               +|..+=.|...+ .+..+-+.+++.+++-+|.|-..|..+
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYT---------------VW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHR  118 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYT---------------VWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHR  118 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccch---------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHH
Confidence            3456678899999999999776544               344444555443 467778999999999999999999999


Q ss_pred             HHHHhccCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390          150 SQAHLKTSELE-KAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  194 (209)
Q Consensus       150 a~~~~~~~~~~-~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~  194 (209)
                      -.+...+|+.. .-+...+.++..+..|-.++....-+-+..+...
T Consensus       119 r~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~  164 (318)
T KOG0530|consen  119 RVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYE  164 (318)
T ss_pred             HHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHH
Confidence            99999999888 7788899999999999999998888776666544

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=91.63  E-value=3.2  Score=34.99  Aligned_cols=86  Identities=14%  Similarity=0.184  Sum_probs=63.1

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhhhCC--------Cc--------hHH--HHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390          114 NNAACKLKLEDYSETSSLCTKVLELEP--------LN--------VKA--LYRRSQAHLKTSELEKAEADIKRALTIDPN  175 (209)
Q Consensus       114 ~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~--------~~~--~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~  175 (209)
                      .-|..+++++.|..|.--+..+|+++.        ..        +..  --.+..||.++++.+-|+....+.+-++|.
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~  260 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS  260 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence            334445567777776666666666531        11        111  234788999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Q 028390          176 NRVVKLVYMELKDKQREYAKYQAE  199 (209)
Q Consensus       176 ~~~~~~~l~~l~~~~~~~~~~~~~  199 (209)
                      ..--+-..+.|-++++.+.+..+.
T Consensus       261 ~frnHLrqAavfR~LeRy~eAarS  284 (569)
T PF15015_consen  261 YFRNHLRQAAVFRRLERYSEAARS  284 (569)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            988888888888888888776654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=91.52  E-value=2.3  Score=38.91  Aligned_cols=50  Identities=12%  Similarity=0.051  Sum_probs=36.5

Q ss_pred             HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 028390          118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRA  169 (209)
Q Consensus       118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  169 (209)
                      .|...|.|.+|++..+.--++.  -...||+.|.-+...+|.+.|+.+|+++
T Consensus       835 lyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~  884 (1416)
T KOG3617|consen  835 LYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKA  884 (1416)
T ss_pred             HHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence            4556667777666554432222  2456899999999999999999999986

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=91.42  E-value=4  Score=31.84  Aligned_cols=84  Identities=15%  Similarity=0.038  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC--CCc----hHHHHHHH
Q 028390           77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE--PLN----VKALYRRS  150 (209)
Q Consensus        77 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~----~~~~~~~a  150 (209)
                      ...+..+.+|+..+.....         ......+...+|.-|+..|+|+.|+..++.+...-  ..+    ...+-.+.
T Consensus       155 ~~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~  225 (247)
T PF11817_consen  155 KLIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLL  225 (247)
T ss_pred             HHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            4556677777776665433         13445567889999999999999999999996542  222    45567788


Q ss_pred             HHHhccCCHHHHHHHHHHH
Q 028390          151 QAHLKTSELEKAEADIKRA  169 (209)
Q Consensus       151 ~~~~~~~~~~~A~~~~~~a  169 (209)
                      .|+..+|+.+..+...-+.
T Consensus       226 ~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  226 ECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHhCCHHHHHHHHHHH
Confidence            8999999998887665443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=91.42  E-value=3.5  Score=31.84  Aligned_cols=119  Identities=15%  Similarity=0.009  Sum_probs=68.7

Q ss_pred             HHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCH-HHHH-HHHHHHhh-h-CCCch--H
Q 028390           71 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY-SETS-SLCTKVLE-L-EPLNV--K  144 (209)
Q Consensus        71 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~-~~~~~al~-~-~p~~~--~  144 (209)
                      |..|+|+.|+....-||...-..|..   -+..+....+.-...-+......|.. +-.. ..+..+.. . -|+-+  +
T Consensus        94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~---f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAK  170 (230)
T PHA02537         94 FDIGDFDGALEIAEYALEHGLTMPDQ---FRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAK  170 (230)
T ss_pred             eeccCHHHHHHHHHHHHHcCCCCCcc---ccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHH
Confidence            45799999999999999875443321   11122233333344444444555542 2221 11111111 1 13333  3


Q ss_pred             HHHHHHHHH---------hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 028390          145 ALYRRSQAH---------LKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  193 (209)
Q Consensus       145 ~~~~~a~~~---------~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~  193 (209)
                      .|--.|.++         ...++...|+..+++|+.++|. ..+.+.+.+|..+++..
T Consensus       171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~~  227 (230)
T PHA02537        171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKAL  227 (230)
T ss_pred             HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhhc
Confidence            334455656         2456888999999999999975 66777788888877643

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=91.18  E-value=11  Score=33.74  Aligned_cols=115  Identities=15%  Similarity=0.155  Sum_probs=80.7

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP  140 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  140 (209)
                      ..+-..++..-.-|-++.....|.+.|.+--..|               .+..|.|..+-...-|++|.+.|++.+.+-+
T Consensus       478 kiWs~y~DleEs~gtfestk~vYdriidLriaTP---------------qii~NyAmfLEeh~yfeesFk~YErgI~LFk  542 (835)
T KOG2047|consen  478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATP---------------QIIINYAMFLEEHKYFEESFKAYERGISLFK  542 (835)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence            3344445555556788888888988887633322               3568888888888889999999999998753


Q ss_pred             -Cc----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHH
Q 028390          141 -LN----VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN--RVVKLVYMELKDKQ  190 (209)
Q Consensus       141 -~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l~~l~~~~  190 (209)
                       ++    +..|+......+..-..+.|...|++|++..|..  ..+--.++.+.++.
T Consensus       543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~  599 (835)
T KOG2047|consen  543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEH  599 (835)
T ss_pred             CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence             32    4456677777777889999999999999998832  23333444444444

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.13  E-value=2.6  Score=26.56  Aligned_cols=35  Identities=14%  Similarity=0.148  Sum_probs=30.2

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH   93 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~   93 (209)
                      .+..+...|..+-+.|+|++|+.+|.+||..+...
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~   39 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQV   39 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            45667788999999999999999999999987653

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=90.98  E-value=2.2  Score=36.18  Aligned_cols=60  Identities=18%  Similarity=0.214  Sum_probs=51.2

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      ...+.+.|.-+|..|+|.++..+-....++.|+                ..+|.-+|.|.+..++|.+|-.++...
T Consensus       462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaPS----------------~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS----------------PQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc----------------HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            566778999999999999999988888887663                357999999999999999998877554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.85  E-value=2  Score=33.82  Aligned_cols=87  Identities=17%  Similarity=0.104  Sum_probs=70.0

Q ss_pred             HhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028390          120 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA  198 (209)
Q Consensus       120 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~  198 (209)
                      .+...-..|+.....+|.++|.+-.+|..+-.++..++ +..+-+.++..+++-+|.|-.++...+.+-+.+....-.|-
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            34555678888899999999999998877777766665 78888899999999999999999999998888876554566


Q ss_pred             HHHHhhhh
Q 028390          199 EIFGTMLS  206 (209)
Q Consensus       199 ~~~~~~~~  206 (209)
                      ...++|+.
T Consensus       134 ef~~~~l~  141 (318)
T KOG0530|consen  134 EFTKLMLD  141 (318)
T ss_pred             HHHHHHHh
Confidence            66666654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.71  E-value=2.2  Score=39.87  Aligned_cols=106  Identities=14%  Similarity=0.115  Sum_probs=80.4

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC---
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE---  139 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---  139 (209)
                      ...-|+.+|..|.|+.|.-.|...-.                       |..+|.....+|+|..|.....+|-...   
T Consensus      1197 i~~vGdrcf~~~~y~aAkl~y~~vSN-----------------------~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK 1253 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNVSN-----------------------FAKLASTLVYLGEYQGAVDAARKANSTKTWK 1253 (1666)
T ss_pred             HHHHhHHHhhhhhhHHHHHHHHHhhh-----------------------HHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence            45679999999999999888875333                       7888899999999999999888874331   


Q ss_pred             ------------------CC----chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          140 ------------------PL----NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       140 ------------------p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                                        .-    +.+-+=.+..-|...|-|++-+..++.++-+.-.+-..-..|+.++.+-+
T Consensus      1254 ~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred             HHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence                              11    12223334556778889999999999999988888888888888876543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.62  E-value=4.7  Score=28.91  Aligned_cols=84  Identities=8%  Similarity=0.004  Sum_probs=68.9

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      .+.....+-+...+.+++...+.-.--+-|.....-.--|..+...|+|.+|+..|+.+.+-.+..+-....+..|..-+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            34555555566889999888888877889999999999999999999999999999999888887787878888877665


Q ss_pred             HHHH
Q 028390          191 REYA  194 (209)
Q Consensus       191 ~~~~  194 (209)
                      ....
T Consensus        92 ~Dp~   95 (153)
T TIGR02561        92 GDAE   95 (153)
T ss_pred             CChH
Confidence            5443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=90.56  E-value=7.2  Score=34.19  Aligned_cols=78  Identities=18%  Similarity=-0.034  Sum_probs=56.7

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHH-HHHhhhCCCchHHHHHH------HHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 028390          110 SCYLNNAACKLKLEDYSETSSLC-TKVLELEPLNVKALYRR------SQAHLKTSELEKAEADIKRALTIDPNNRVVKLV  182 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~~~------a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~  182 (209)
                      .++.|++......|....++... ..+....|++......+      +..+..+++..++...+.++..+.|.++.+...
T Consensus       102 ~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~  181 (620)
T COG3914         102 PAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGA  181 (620)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence            46778877777666665555444 44777888876665555      777888888888888888888888888777776


Q ss_pred             HHHHH
Q 028390          183 YMELK  187 (209)
Q Consensus       183 l~~l~  187 (209)
                      +....
T Consensus       182 ~~~~r  186 (620)
T COG3914         182 LMTAR  186 (620)
T ss_pred             HHHHH
Confidence            66653

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.42  E-value=1.1  Score=23.77  Aligned_cols=32  Identities=16%  Similarity=0.103  Sum_probs=24.7

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHH--HHhhhCCCc
Q 028390          111 CYLNNAACKLKLEDYSETSSLCT--KVLELEPLN  142 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~--~al~~~p~~  142 (209)
                      .+..+|.++...|++++|+..++  .+..+++.|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            36778899999999999999954  787777754

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.17  E-value=0.89  Score=28.51  Aligned_cols=35  Identities=14%  Similarity=-0.063  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   92 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~   92 (209)
                      ..+..+...|...-..|+|++|+..|..||+++-.
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            34666778888889999999999999999998766

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=90.14  E-value=0.6  Score=39.08  Aligned_cols=60  Identities=13%  Similarity=0.133  Sum_probs=47.4

Q ss_pred             HhHHHHHHHhhcCHHHHHHHHHHHh--------hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          112 YLNNAACKLKLEDYSETSSLCTKVL--------ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       112 ~~~~a~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      ...+..++..+|+|..|++.++.+-        ...+-++..+|..|.||..+++|.+|+..|..++-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677788999999998876542        11244578899999999999999999999988763

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.93  E-value=1.2  Score=33.63  Aligned_cols=51  Identities=12%  Similarity=0.094  Sum_probs=42.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHH
Q 028390           69 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS  130 (209)
Q Consensus        69 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  130 (209)
                      .+|.+.+.++|+..|.+++.+.+.+..+           ...++..++.++.++|+++.|.-
T Consensus       149 tyY~krD~~Kt~~ll~~~L~l~~~~~~~-----------n~eil~sLas~~~~~~~~e~AYi  199 (203)
T PF11207_consen  149 TYYTKRDPEKTIQLLLRALELSNPDDNF-----------NPEILKSLASIYQKLKNYEQAYI  199 (203)
T ss_pred             HHHHccCHHHHHHHHHHHHHhcCCCCCC-----------CHHHHHHHHHHHHHhcchhhhhh
Confidence            3456899999999999999998776444           36679999999999999999853

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.73  E-value=0.55  Score=22.66  Aligned_cols=23  Identities=26%  Similarity=0.138  Sum_probs=20.6

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCT  133 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~  133 (209)
                      +..++|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            57899999999999999998765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.54  E-value=0.99  Score=28.31  Aligned_cols=37  Identities=14%  Similarity=-0.094  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH   93 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~   93 (209)
                      +..+..+..+|...-..|+|++|+..|..||+.+-..
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~   39 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPA   39 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            3456677788999999999999999999999987653

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.48  E-value=3.6  Score=25.64  Aligned_cols=36  Identities=17%  Similarity=0.121  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   92 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~   92 (209)
                      +..+..+...|...-..|+|++|+.+|..|+..+-.
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   38 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            345677888999999999999999999999998755

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.30  E-value=3.8  Score=25.66  Aligned_cols=37  Identities=14%  Similarity=-0.013  Sum_probs=31.0

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcC
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH   94 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~   94 (209)
                      ..+..+...|...-..|+|++|...|..+|+.+....
T Consensus         4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~   40 (75)
T cd02677           4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGV   40 (75)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            4466677888889999999999999999999887643

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.23  E-value=11  Score=30.76  Aligned_cols=92  Identities=17%  Similarity=0.170  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc--------hHHHHHHHHHHhccCCHHHHHHHHHHHH--hcC
Q 028390          104 ANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN--------VKALYRRSQAHLKTSELEKAEADIKRAL--TID  173 (209)
Q Consensus       104 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~a~--~l~  173 (209)
                      ..+....+...+|.+|-+.++|..|-+.+. ++..+...        ...+.++|.+|...++-.+|..+..++-  ..+
T Consensus        98 feEqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~  176 (399)
T KOG1497|consen   98 FEEQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE  176 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc
Confidence            345566788999999999999999877663 33443311        2357889999999999999999999873  346


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q 028390          174 PNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       174 p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      ..|+...-.+.-|+.|.-+.+.+
T Consensus       177 ~~Ne~Lqie~kvc~ARvlD~krk  199 (399)
T KOG1497|consen  177 SSNEQLQIEYKVCYARVLDYKRK  199 (399)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHH
Confidence            68888888888888888666543

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.03  E-value=3.3  Score=29.41  Aligned_cols=49  Identities=16%  Similarity=0.227  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      +....++......|++.-|......++..+|+|..++..+..+.+.+..
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            4445555555666666666666666666666666666666655555544

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.96  E-value=0.84  Score=25.42  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=24.3

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390          113 LNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus       113 ~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +++|..|..+|+++.|...++.++.-.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            678999999999999999999999543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=88.95  E-value=4.4  Score=34.88  Aligned_cols=106  Identities=11%  Similarity=-0.024  Sum_probs=69.9

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +...-..-......|+...|-.....+++-.|.+|.               ...-++.+...+|.|++|...+.-+-..-
T Consensus       289 ~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~---------------~i~l~~~i~~~lg~ye~~~~~~s~~~~~~  353 (831)
T PRK15180        289 IREITLSITKQLADGDIIAASQQLFAALRNQQQDPV---------------LIQLRSVIFSHLGYYEQAYQDISDVEKII  353 (831)
T ss_pred             hhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCch---------------hhHHHHHHHHHhhhHHHHHHHhhchhhhh
Confidence            333334445566778888888888888887777665               35566778888999999888776665544


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK  180 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  180 (209)
                      ....++.--+-..+..+++++.|...-.-.+.-.-+++++.
T Consensus       354 ~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~  394 (831)
T PRK15180        354 GTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVL  394 (831)
T ss_pred             cCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhhe
Confidence            44444555555567777777777766655554444444443

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=88.93  E-value=1.6  Score=27.23  Aligned_cols=36  Identities=19%  Similarity=0.133  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   92 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~   92 (209)
                      ...+..+...|...-..|++++|+.+|..|++.+..
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~   40 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE   40 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            445667788899999999999999999999998765

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=88.68  E-value=2.4  Score=35.60  Aligned_cols=131  Identities=17%  Similarity=0.183  Sum_probs=67.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHH
Q 028390           69 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYR  148 (209)
Q Consensus        69 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  148 (209)
                      .+.-.|+|..|++.... |.+...      ........-.+.+++..|-+|+-+++|.+|+..+..++-.-......+..
T Consensus       131 vh~LLGDY~~Alk~l~~-idl~~~------~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~  203 (404)
T PF10255_consen  131 VHCLLGDYYQALKVLEN-IDLNKK------GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ  203 (404)
T ss_pred             HHHhccCHHHHHHHhhc-cCcccc------hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            33446777777766542 111110      00011123356789999999999999999999999987542211111222


Q ss_pred             HHHHHhc-cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Q 028390          149 RSQAHLK-TSELEKAEADIKRALTIDPN--NRVVKLVYMEL-KDKQREYAKYQAEIFGTMLS  206 (209)
Q Consensus       149 ~a~~~~~-~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~  206 (209)
                      +.--+-. .+..++....+--++.+.|.  +..+...+..- .++..+-....-..|..+|.
T Consensus       204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~  265 (404)
T PF10255_consen  204 RSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFS  265 (404)
T ss_pred             ccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            2222222 12344455555556677775  44444333332 23333333334455555554

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=88.57  E-value=12  Score=30.45  Aligned_cols=63  Identities=16%  Similarity=0.174  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          125 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       125 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      .+..+..+++||+.+|++...+..+-.+..+..+-+....-+++++..+|++...+..+-.-.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~  109 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFR  109 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            467788999999999999999999888999999999999999999999999998887665543

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=88.52  E-value=4.5  Score=25.63  Aligned_cols=61  Identities=16%  Similarity=0.036  Sum_probs=44.8

Q ss_pred             HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH---HHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVK---ALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                      ....|.-++...+.++|+....++++..++...   ++-.+..+|...|++.+++.+...-+.+
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455556778889999999999988776654   4444668999999999988776554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=88.31  E-value=2.4  Score=36.72  Aligned_cols=76  Identities=17%  Similarity=0.144  Sum_probs=64.5

Q ss_pred             hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS---ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      ....+..|+.+|.++++.-|+....+.+++.++.+.+   +.-.|+.+...++.++|....++-.|.++...+....+.
T Consensus       386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea  464 (758)
T KOG1310|consen  386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA  464 (758)
T ss_pred             hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence            3455778999999999999999999999999998865   556788888999999999999998888888877776654

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.02  E-value=4.8  Score=25.24  Aligned_cols=41  Identities=15%  Similarity=0.088  Sum_probs=19.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHH-------hcCCCCHHHHHHHHHH
Q 028390          146 LYRRSQAHLKTSELEKAEADIKRAL-------TIDPNNRVVKLVYMEL  186 (209)
Q Consensus       146 ~~~~a~~~~~~~~~~~A~~~~~~a~-------~l~p~~~~~~~~l~~l  186 (209)
                      +..+|.-+-+.|++.+|+.+|++++       ...|+++.-......+
T Consensus         9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki   56 (75)
T cd02682           9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMI   56 (75)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            3444444455555555554444443       4467665543333333

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=87.82  E-value=7.9  Score=33.96  Aligned_cols=99  Identities=18%  Similarity=0.006  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhcc
Q 028390           77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKT  156 (209)
Q Consensus        77 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~  156 (209)
                      ..++..+...+.+.+..+.           +.. ... ++..+...+....+......++..+|.+..++.++|.+....
T Consensus        48 ~~~~~a~~~~~~~~~~~~~-----------lll-a~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~  114 (620)
T COG3914          48 ALAIYALLLGIAINDVNPE-----------LLL-AAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELD  114 (620)
T ss_pred             hHHHHHHHccCccCCCCHH-----------HHH-HHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHh
Confidence            3366666666664443332           112 222 778888899999999999999999999999999999999998


Q ss_pred             CCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHH
Q 028390          157 SELEKAEADIKR-ALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       157 ~~~~~A~~~~~~-a~~l~p~~~~~~~~l~~l~~  188 (209)
                      |....+...+.. +....|.+......+-.+.+
T Consensus       115 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  147 (620)
T COG3914         115 GLQFLALADISEIAEWLSPDNAEFLGHLIRFYQ  147 (620)
T ss_pred             hhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHH
Confidence            887777766666 88899999988888844444

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.78  E-value=2.8  Score=31.66  Aligned_cols=77  Identities=13%  Similarity=0.042  Sum_probs=47.3

Q ss_pred             HHHhhcCHHHHHHHHHHHhhhC-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHH
Q 028390          118 CKLKLEDYSETSSLCTKVLELE-PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN----NRVVKLVYMELKDKQRE  192 (209)
Q Consensus       118 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~----~~~~~~~l~~l~~~~~~  192 (209)
                      .+...-.=+.|...+..+=.-. -+.+...+.+|.-|. ..|.++|+..|.+++++.+.    |+++...|+.+...++.
T Consensus       115 y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~  193 (203)
T PF11207_consen  115 YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN  193 (203)
T ss_pred             HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence            3334433445655554432211 134666666665444 67888888888888888543    47888888888777766


Q ss_pred             HHH
Q 028390          193 YAK  195 (209)
Q Consensus       193 ~~~  195 (209)
                      ++.
T Consensus       194 ~e~  196 (203)
T PF11207_consen  194 YEQ  196 (203)
T ss_pred             hhh
Confidence            543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=87.62  E-value=7.6  Score=32.34  Aligned_cols=70  Identities=14%  Similarity=0.016  Sum_probs=52.5

Q ss_pred             HhHHHHHHHh---hcCHHHHHHHHHHH-hhhCCCchHHHHHHHHHHhcc---------CCHHHHHHHHHHHHhcCCCCHH
Q 028390          112 YLNNAACKLK---LEDYSETSSLCTKV-LELEPLNVKALYRRSQAHLKT---------SELEKAEADIKRALTIDPNNRV  178 (209)
Q Consensus       112 ~~~~a~~~~~---~~~~~~A~~~~~~a-l~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~a~~l~p~~~~  178 (209)
                      ....|.++.+   .|+.++|+..+..+ ....+.+++.+.-.|.+|-.+         ...++|+..|.++.+++|+.-.
T Consensus       182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~  261 (374)
T PF13281_consen  182 KFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS  261 (374)
T ss_pred             HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence            3445555555   89999999999994 455677789999988877543         2478899999999999987543


Q ss_pred             HHH
Q 028390          179 VKL  181 (209)
Q Consensus       179 ~~~  181 (209)
                      ..+
T Consensus       262 GIN  264 (374)
T PF13281_consen  262 GIN  264 (374)
T ss_pred             hHH
Confidence            333

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=87.35  E-value=2  Score=30.54  Aligned_cols=51  Identities=20%  Similarity=0.147  Sum_probs=41.6

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHH
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELE  160 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~  160 (209)
                      .....++.-.+..|+|.-|.+.++.++..+|++..+...++.++.++|.-.
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            346778888889999999999999999999999999999999998887543

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=86.81  E-value=16  Score=30.75  Aligned_cols=107  Identities=16%  Similarity=0.030  Sum_probs=79.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc--CHHHHHHHHHHHhhhCCCchHHH
Q 028390           69 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE--DYSETSSLCTKVLELEPLNVKAL  146 (209)
Q Consensus        69 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~  146 (209)
                      ...+..-.+.-+.+-..++...|+.-.               +|+-+..+..+.+  +|..-+..|.+++++||.|..+|
T Consensus        84 ~~ek~~~ld~eL~~~~~~L~~npksY~---------------aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W  148 (421)
T KOG0529|consen   84 PLEKQALLDEELKYVESALKVNPKSYG---------------AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAW  148 (421)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhCchhHH---------------HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccch
Confidence            334444667778888888888776543               6889999988765  36888999999999999998877


Q ss_pred             HHHHHHHhcc-C---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          147 YRRSQAHLKT-S---ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       147 ~~~a~~~~~~-~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      ..+-.+.... .   ...+=+.+..+++.-++.|-.++.....+-..+
T Consensus       149 ~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l  196 (421)
T KOG0529|consen  149 HYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL  196 (421)
T ss_pred             HHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence            5544333332 2   366777888888888999999988887776644

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.69  E-value=5.6  Score=24.63  Aligned_cols=36  Identities=14%  Similarity=0.080  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH   93 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~   93 (209)
                      ..+..+...|...-..|++++|+.+|..|+..+...
T Consensus         4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~   39 (75)
T cd02656           4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQA   39 (75)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            345667788899999999999999999999987653

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.64  E-value=11  Score=28.01  Aligned_cols=99  Identities=17%  Similarity=0.109  Sum_probs=67.2

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh-hhCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL-ELEP  140 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p  140 (209)
                      .....|.....+|+-..|+..|..+-.-.+. |.          ..+-.+...-+..+.-.|.|+....-.+..- .-+|
T Consensus        96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~----------~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~  164 (221)
T COG4649          96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQ----------IGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNP  164 (221)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cc----------hhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCCh
Confidence            3456777778888888888888876553221 11          1122345555666677888887655554332 2345


Q ss_pred             CchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          141 LNVKALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      --..+.--+|.+-++-|++.+|...|..+..
T Consensus       165 mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            5566677789999999999999999998876

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=85.60  E-value=8.2  Score=27.32  Aligned_cols=41  Identities=20%  Similarity=0.179  Sum_probs=28.5

Q ss_pred             HHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          131 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       131 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      .+..+...+..++..++.+|.+|.++|+..+|...+++|-+
T Consensus       108 i~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe  148 (161)
T PF09205_consen  108 IYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE  148 (161)
T ss_dssp             HHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            33333334566789999999999999999999999988865

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.51  E-value=22  Score=31.36  Aligned_cols=103  Identities=15%  Similarity=-0.027  Sum_probs=72.8

Q ss_pred             cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-----CHHHHHHHHHHHhhhCCCchHHHH
Q 028390           73 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-----DYSETSSLCTKVLELEPLNVKALY  147 (209)
Q Consensus        73 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~  147 (209)
                      .++.+.|+.+|..+..-+.....          .....+.+.+|.+|..-.     ++..|+..+.++-.++.  +.+.+
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~----------~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~  329 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAAT----------KGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQY  329 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHh----------hcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHH
Confidence            46889999999999872100000          001125788999998743     67889999999877754  66789


Q ss_pred             HHHHHHhccC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          148 RRSQAHLKTS---ELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       148 ~~a~~~~~~~---~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      .+|.++..-.   +...|..+|..|...  .+..+...++.|...
T Consensus       330 ~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~  372 (552)
T KOG1550|consen  330 LLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL  372 (552)
T ss_pred             HHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence            9999998887   678999999888753  456666666666543

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=85.44  E-value=2.7  Score=20.58  Aligned_cols=26  Identities=31%  Similarity=0.374  Sum_probs=12.6

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390          158 ELEKAEADIKRALTIDPNNRVVKLVY  183 (209)
Q Consensus       158 ~~~~A~~~~~~a~~l~p~~~~~~~~l  183 (209)
                      +++.|...|++++...|.++.++..+
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y   27 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKY   27 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            34444555555555555444444443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=85.26  E-value=12  Score=28.89  Aligned_cols=69  Identities=20%  Similarity=0.187  Sum_probs=58.1

Q ss_pred             HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      -.++-+...+|+.....-++-+|.+......+-+.|.-.|+|++|..-++-+-.+.|++......+..+
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l   78 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHL   78 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence            455678889999999999999999988888888999999999999999999999999876554444443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=85.20  E-value=28  Score=31.28  Aligned_cols=29  Identities=24%  Similarity=0.129  Sum_probs=20.4

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHH
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKI   89 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~   89 (209)
                      ..+...|..+-..|+.+.|...|.+|+..
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V  416 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKV  416 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence            34556677777777777777777777654

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=83.83  E-value=5  Score=29.85  Aligned_cols=50  Identities=18%  Similarity=0.178  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390          125 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN  175 (209)
Q Consensus       125 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~  175 (209)
                      .+..++...+.+...| ++..+.+++.++...|+.++|.....++..+.|.
T Consensus       127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~  176 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA  176 (193)
T ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            4455666677777777 5888999999999999999999999999999994

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=83.78  E-value=3.1  Score=20.33  Aligned_cols=29  Identities=17%  Similarity=0.274  Sum_probs=24.4

Q ss_pred             cCHHHHHHHHHHHhhhCCCchHHHHHHHH
Q 028390          123 EDYSETSSLCTKVLELEPLNVKALYRRSQ  151 (209)
Q Consensus       123 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~  151 (209)
                      |+++.|...|++++...|.+...|...+.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            46788999999999999988888877654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=83.40  E-value=7.7  Score=35.01  Aligned_cols=27  Identities=11%  Similarity=0.049  Sum_probs=15.6

Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADI  166 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~  166 (209)
                      |.+.+.+=.+|..+...|-.++|...|
T Consensus       849 pe~s~llp~~a~mf~svGMC~qAV~a~  875 (1189)
T KOG2041|consen  849 PEDSELLPVMADMFTSVGMCDQAVEAY  875 (1189)
T ss_pred             CcccchHHHHHHHHHhhchHHHHHHHH
Confidence            555555555666666666555555544

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=83.34  E-value=23  Score=34.10  Aligned_cols=130  Identities=16%  Similarity=0.119  Sum_probs=91.5

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+.+++..+..+...+++++|+..-.+|+-+........       ..-....|.+++...+..++...|+..+.++..+
T Consensus       972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d-------s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen  972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD-------SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred             HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC-------CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence            355677788888999999999998888876544322111       0112446899999999999999999999888765


Q ss_pred             -----C---CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHHHHHH
Q 028390          139 -----E---PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP--------NNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       139 -----~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p--------~~~~~~~~l~~l~~~~~~~~~  195 (209)
                           .   |.-.-...+++..+..+++++.|+.+++.|...+-        .+......++++....+.++.
T Consensus      1045 ~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~ 1117 (1236)
T KOG1839|consen 1045 KLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRN 1117 (1236)
T ss_pred             hccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHH
Confidence                 2   33344567888888899999999999999988642        123444455555555555443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=83.31  E-value=5.9  Score=31.82  Aligned_cols=50  Identities=24%  Similarity=0.183  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      .+.+...+..|...|.+.+|....++++.++|-+....+.+..+...+..
T Consensus       279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD  328 (361)
T COG3947         279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD  328 (361)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence            34556678899999999999999999999999999999998888877765

>PF12854 PPR_1: PPR repeat

Probab=83.24  E-value=3.7  Score=21.15  Aligned_cols=28  Identities=11%  Similarity=0.014  Sum_probs=19.9

Q ss_pred             CchHHHHHHHHHHhccCCHHHHHHHHHH
Q 028390          141 LNVKALYRRSQAHLKTSELEKAEADIKR  168 (209)
Q Consensus       141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~  168 (209)
                      .+.-.|-.+-.+|.+.|+.++|...|++
T Consensus         5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    5 PDVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            3455667777778888888888777654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=83.08  E-value=27  Score=29.46  Aligned_cols=89  Identities=13%  Similarity=0.035  Sum_probs=65.1

Q ss_pred             HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHH--HHHhhcCHHHHHHHHHHHhhhCCCch
Q 028390           66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAA--CKLKLEDYSETSSLCTKVLELEPLNV  143 (209)
Q Consensus        66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~A~~~~~~al~~~p~~~  143 (209)
                      .+....-.|+|+.|.+.|+..+. +|.                ..+.--+|.  -...+|..+.|+++..++-..-|.-.
T Consensus       126 eAQaal~eG~~~~Ar~kfeAMl~-dPE----------------tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~  188 (531)
T COG3898         126 EAQAALLEGDYEDARKKFEAMLD-DPE----------------TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP  188 (531)
T ss_pred             HHHHHHhcCchHHHHHHHHHHhc-ChH----------------HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc
Confidence            45555567888888888876664 121                112222332  23468999999999999999999988


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          144 KALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      .+..-.-.....-|||+.|++......+
T Consensus       189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         189 WAARATLEARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            8888888888999999999998876554

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.71  E-value=9.6  Score=32.35  Aligned_cols=119  Identities=10%  Similarity=0.012  Sum_probs=73.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHH--
Q 028390           49 WKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS--  126 (209)
Q Consensus        49 ~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--  126 (209)
                      ++.+.....--+.-+.+.|..+.....|.+|+...-.|=+.+....+.    .-..-+-.+.+-..+.+||+.+++..  
T Consensus       152 lppsE~kAlmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~k----lLe~VDNyallnLDIVWCYfrLknitcL  227 (568)
T KOG2561|consen  152 LPPSEQKALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSK----LLELVDNYALLNLDIVWCYFRLKNITCL  227 (568)
T ss_pred             cChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHH----HHHhhcchhhhhcchhheehhhcccccC
Confidence            333333345556778899999999999999999888877766554320    00011112334566788999887643  


Q ss_pred             -HHHHHH---HHHhhh-------------CCCc-hHH-----HHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          127 -ETSSLC---TKVLEL-------------EPLN-VKA-----LYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       127 -~A~~~~---~~al~~-------------~p~~-~~~-----~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                       .|..-+   .+.+..             .+.. ..+     +..-|.+.+++|+-++|..+++.+..
T Consensus       228 ~DAe~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~  295 (568)
T KOG2561|consen  228 PDAEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA  295 (568)
T ss_pred             ChHHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence             333322   222221             1222 223     33358999999999999999988754

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=82.59  E-value=27  Score=29.15  Aligned_cols=82  Identities=11%  Similarity=0.007  Sum_probs=66.4

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhh----CCCchHHHHHHHHHHhc---cCCHHHHHHHHHHH-HhcCCCCHHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLEL----EPLNVKALYRRSQAHLK---TSELEKAEADIKRA-LTIDPNNRVVK  180 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a-~~l~p~~~~~~  180 (209)
                      ..+..++=.+|....+|+.=+...+..-.+    -+..+..-+..|.|+.+   .|+.++|+..+..+ ..-.+.+++..
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            345677778899999999888888777666    34556777889999999   99999999999995 45567789999


Q ss_pred             HHHHHHHHHH
Q 028390          181 LVYMELKDKQ  190 (209)
Q Consensus       181 ~~l~~l~~~~  190 (209)
                      -.+.++++.+
T Consensus       221 gL~GRIyKD~  230 (374)
T PF13281_consen  221 GLLGRIYKDL  230 (374)
T ss_pred             HHHHHHHHHH
Confidence            9999998776

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=82.21  E-value=28  Score=29.08  Aligned_cols=101  Identities=17%  Similarity=0.142  Sum_probs=63.5

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHH--hhcCHHHHHHHHHHHh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL--KLEDYSETSSLCTKVL  136 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~al  136 (209)
                      .+......+..+|+.++|..|...+...+...+....             ...+..++.+|.  ..-++++|.+.++..+
T Consensus       130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-------------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~  196 (379)
T PF09670_consen  130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE-------------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL  196 (379)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3456778899999999999999999998875332111             233444444443  4566777777777555


Q ss_pred             hhCC------------------------------C-----c---hHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          137 ELEP------------------------------L-----N---VKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       137 ~~~p------------------------------~-----~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                      ...-                              .     .   ..-++.-|.=-...|+|+.|..-+-+++++
T Consensus       197 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl  270 (379)
T PF09670_consen  197 KRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL  270 (379)
T ss_pred             HHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            3210                              0     0   011222233334678899999998888876

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=81.79  E-value=16  Score=29.64  Aligned_cols=62  Identities=18%  Similarity=0.215  Sum_probs=49.9

Q ss_pred             HHHHHHhhhCCCchHHHHHHHHHHhccCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          130 SLCTKVLELEPLNVKALYRRSQAHLKTSE------------LEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       130 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      ..+++.+.-+|.++.+|..+......+-.            .+.-+..|++|++.+|++......+-.+-..+-
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~   79 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW   79 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence            45788889999999999998876665543            456778899999999999988888777766654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.42  E-value=12  Score=34.33  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=28.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   92 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~   92 (209)
                      +..++..|+-+|++|++++|...|.++|.....
T Consensus       368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~  400 (933)
T KOG2114|consen  368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP  400 (933)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence            455788999999999999999999999876543

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=80.93  E-value=33  Score=28.94  Aligned_cols=71  Identities=15%  Similarity=0.082  Sum_probs=62.5

Q ss_pred             cCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 028390          123 EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS--ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  193 (209)
Q Consensus       123 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~  193 (209)
                      ..+++-+.....++..+|+.-.+|+-+..++.+.+  +|..-++..+++++.+|.|-.++.....+....+..
T Consensus        89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~  161 (421)
T KOG0529|consen   89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS  161 (421)
T ss_pred             HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence            35677788889999999999999999999998776  578889999999999999999999988888877766

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.47  E-value=26  Score=30.58  Aligned_cols=80  Identities=18%  Similarity=0.107  Sum_probs=61.7

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhh---C--CC--chHHHHHHHHHHhccCC-HHHHHHHHHHHHhcCCCCHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLEL---E--PL--NVKALYRRSQAHLKTSE-LEKAEADIKRALTIDPNNRVVKLV  182 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~--p~--~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~l~p~~~~~~~~  182 (209)
                      -+.-+|.|...+|+-..|...+..++.-   .  ..  .+-++|-+|..|..++. +.++..++.+|.....+..--.+.
T Consensus       451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenRL  530 (546)
T KOG3783|consen  451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELENRL  530 (546)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhHH
Confidence            4677889999999999999988887732   1  11  27899999999999999 999999999999887666544444


Q ss_pred             HHHHHHHH
Q 028390          183 YMELKDKQ  190 (209)
Q Consensus       183 l~~l~~~~  190 (209)
                      --+|+..+
T Consensus       531 h~rIqAAl  538 (546)
T KOG3783|consen  531 HMRIQAAL  538 (546)
T ss_pred             HHHHHHHH
Confidence            44454443

>PF15469 Sec5: Exocyst complex component Sec5

Probab=80.26  E-value=15  Score=27.09  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=20.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHhhc
Q 028390           70 LFRAGKYWRASKKYEKAAKIIEFH   93 (209)
Q Consensus        70 ~~~~~~~~~A~~~y~~al~~~~~~   93 (209)
                      ++..|+|+.++..|.+|-.++...
T Consensus        96 ~i~~~dy~~~i~dY~kak~l~~~~  119 (182)
T PF15469_consen   96 CIKKGDYDQAINDYKKAKSLFEKY  119 (182)
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHh
Confidence            357899999999999999987664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		8e-27
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		9e-27
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		4e-26
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		5e-25
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		2e-16
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		3e-16
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		7e-12
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		1e-10
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-10
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		2e-09
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		1e-07
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-05
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		7e-05
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		3e-04
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		3e-04
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		5e-04

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  116 bits (291), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 104/208 (50%), Gaps = 2/208 (0%)
Query: 3   MKKEEQATVTISAEYLCSHEVSE--LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
           M++EEQ  + +   Y           +  ++ L YEVTL  F K K  W+MDT EK+E  
Sbjct: 209 MQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQA 268
Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
              K  G + F+ GKY +A  +Y K    +E  +  ++ E   +    L+ +LN A C L
Sbjct: 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328
Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
           KL +Y++    C K L L+  N K LYRR +A L  +E E A+ D ++ L ++P N+  +
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388
Query: 181 LVYMELKDKQREYAKYQAEIFGTMLSKM 208
           L     + K +E+ +    I+  M  K 
Sbjct: 389 LQISMCQKKAKEHNERDRRIYANMFKKF 416

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  116 bits (290), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 110/208 (52%), Gaps = 2/208 (0%)
Query: 3   MKKEEQATVTISAEYLCSHEVSE--LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
           M+K E + V +   Y       E   +  ++ L YE+ L  F K K  W+M++ EK+E  
Sbjct: 88  MEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQS 147
Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
              K  G + F+ GKY +A  +Y+K    +E+  SF+++E  +A  LRL+ +LN A C L
Sbjct: 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207
Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
           KL+ +S     C K LEL+  N K L+RR +AHL  ++ E A AD ++ L + PNN+  K
Sbjct: 208 KLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267
Query: 181 LVYMELKDKQREYAKYQAEIFGTMLSKM 208
                 + + R     + +++  M  ++
Sbjct: 268 TQLAVCQQRIRRQLAREKKLYANMFERL 295

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 2/208 (0%)
Query: 3   MKKEEQATVTISAEYLCSHEVSE--LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEAC 60
           M++EEQ  + +   Y           +  ++ L YEVTL  F K K  W+MDT EK+E  
Sbjct: 209 MQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQA 268
Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
              K  G + F+ GKY +A  +Y K    +E  +  ++ E   +    L+ +LN A C L
Sbjct: 269 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328
Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
           KL +Y++    C K L L+  N K LYRR +A L  +E E A+ D ++ L ++P N+  +
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388
Query: 181 LVYMELKDKQREYAKYQAEIFGTMLSKM 208
           L     + K +E+ +     +  M  K 
Sbjct: 389 LQIFMCQKKAKEHNERDRRTYANMFKKF 416

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 99/182 (54%)
Query: 27  VSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKA 86
           +  ++ L YE+ L  F K K  W+ ++ EK+E     K  G + F+ GKY +A  +Y+K 
Sbjct: 114 IPPNAELKYELHLKSFEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKI 173
Query: 87  AKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL 146
              +E+  SF+++E  +A  LRL+ +LN A C LKL+ +S     C K LEL+  N K L
Sbjct: 174 VSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGL 233
Query: 147 YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 206
            RR +AHL  ++ E A AD ++ L + PNN+  K      + + R     + +++  M  
Sbjct: 234 SRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293
Query: 207 KM 208
           ++
Sbjct: 294 RL 295

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 8/208 (3%)
Query: 2   TMKKEEQATVTISAEYLCSHEVS---ELVSADSVLHYEVTLIDF--TKE-KPFWKMDTHE 55
           +MK  E+A V +  E     E +     V   + L YEV +I F  TKE K    M   E
Sbjct: 115 SMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEE 174
Query: 56  KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQ--ANGLRLSCYL 113
           +I A +R+K DGN LF+  K   A ++YE A   +     F    K+Q  A  ++  C+L
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234
Query: 114 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 173
           N AAC +KL+ Y E    C  VL  E  N KAL+RR +A  +  +++ A  D ++A    
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294
Query: 174 PNNRVVKLVYMELKDKQREYAKYQAEIF 201
           P+++ ++     L ++++   + Q E++
Sbjct: 295 PDDKAIRRELRALAEQEKALYQKQKEMY 322

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 1/127 (0%)
Query: 64  KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD-EKHQANGLRLSCYLNNAACKLKL 122
           K+ GN  F++  +  A KKY K  + +E   +  +D +  +   + LSC LN  ACKLK+
Sbjct: 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286
Query: 123 EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLV 182
            D+      C + LE++P N KALYRR+Q      E ++A AD+K+A  I P ++ ++  
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346
Query: 183 YMELKDK 189
            +++K K
Sbjct: 347 LLKVKQK 353

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 12/120 (10%)
Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
           E+ + +GN LF+ G Y  A   Y +A  +         D   Q   +    + N AAC L
Sbjct: 29  EQLRKEGNELFKCGDYGGALAAYTQALGL---------DATPQDQAV---LHRNRAACHL 76
Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
           KLEDY +  +  +K +E +  +VKALYRRSQA  K   L++A  D++R ++++P N+V +
Sbjct: 77  KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Query: 46  KPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEK--HQ 103
           K  +     EK+++    K +GN  F+  +   A  KY++A      H    DD+    +
Sbjct: 24  KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDK 82
Query: 104 ANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAE 163
              + +SC LN A C  K +DY +     +KVL+++  NVKALY+   A++    LE+A+
Sbjct: 83  KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK 142
Query: 164 ADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSK 207
            ++ +A +++PNN  ++  Y    +K +E  K     FG M  K
Sbjct: 143 ENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Query: 51  MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 110
           MD     EA    K+ GN  ++ G Y +A + Y+KA   +E   +              S
Sbjct: 3   MDPGNSAEAW---KNLGNAYYKQGDYQKAIEYYQKA---LELDPN------------NAS 44
Query: 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 170
            + N      K  DY +      K LEL+P N KA YRR  A+ K  + +KA  D ++AL
Sbjct: 45  AWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKAL 104
Query: 171 TIDPNNRVVKLVYMELKDKQ 190
            +DPNN   K      K KQ
Sbjct: 105 ELDPNNAKAKQNLGNAKQKQ 124

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 49  WKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAA---KIIEFHHSFTDDEKHQAN 105
           W M   EK +A      +GN L+R G    A+ KY  A    K ++        E  Q +
Sbjct: 3   WAMTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLD 62
Query: 106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEAD 165
                  LN   CKL +E+Y E    C+ +L     NVKA ++R +AH      ++A+AD
Sbjct: 63  QQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQAD 122
Query: 166 IKRALTIDP 174
             + L +DP
Sbjct: 123 FAKVLELDP 131

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 55  EKIEACERKKHDGNLLFRAGKYWRASKKYEKAA---KIIEFHHSFTDDEKHQANGLRLSC 111
           EK +A      +GN L+R G    A+ KY  A    K ++        E  Q +      
Sbjct: 3   EKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPL 62
Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
            LN   CKL +E+Y E    C+ +L     NVKA ++R +AH      ++A+AD  + L 
Sbjct: 63  LLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLE 122
Query: 172 IDP 174
           +DP
Sbjct: 123 LDP 125

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           GN  ++ G Y  A + Y+KA ++               N       L NA  K    DY 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALEL-------------DPNNAEAWYNLGNAYYKQG--DYD 60
Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186
           E      K LEL+P N +A Y    A+ K  + ++A    ++AL +DPNN   K      
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120
Query: 187 KDKQ 190
           K KQ
Sbjct: 121 KQKQ 124

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 37/85 (43%)
Query: 106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEAD 165
           G     + N      K  DY E      K LEL+P N +A Y    A+ K  + ++A   
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 166 IKRALTIDPNNRVVKLVYMELKDKQ 190
            ++AL +DPNN   K      K KQ
Sbjct: 66  YQKALELDPNNAEAKQNLGNAKQKQ 90

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 55  EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE---FHHSFTDDEKHQANGLRLSC 111
           +K+++ E  +  GN LF    Y  A   Y  A   ++         + E  + +   +  
Sbjct: 6   DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPL 65
Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
           Y N + C L + D  E     ++VL+ E  N KAL+RR++A +   +L++AE D+K  L 
Sbjct: 66  YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125
Query: 172 IDP 174
             P
Sbjct: 126 NHP 128

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 64  KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE 123
           K  GN LF   KY  A+  Y +A                  N L    Y N A C LK++
Sbjct: 8   KEQGNRLFVGRKYPEAAACYGRAIT---------------RNPLVAVYYTNRALCYLKMQ 52
Query: 124 DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 178
              +  + C + LEL+  +VKA +   Q  L+    ++A A+++RA ++    R+
Sbjct: 53  QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 15/126 (11%)
Query: 53  THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCY 112
            H K  + +  K  GN LF   KY  A+  Y +A                  N L    Y
Sbjct: 2   PHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAIT---------------RNPLVAVYY 46
Query: 113 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172
            N A C LK++   +  + C + LEL+  +VKA +   Q  L+    ++A A+++RA ++
Sbjct: 47  TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106
Query: 173 DPNNRV 178
               R+
Sbjct: 107 AKEQRL 112

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 109 LSCYLNNAACKLKLE-------DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEK 161
           L  Y NNA     L        DY E      K LEL P N +A Y    A+ K  + ++
Sbjct: 36  LELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 95
Query: 162 AEADIKRALTIDPNNRVVKLVYMELKDKQ 190
           A    ++AL + PNN   K      K KQ
Sbjct: 96  AIEYYQKALELYPNNAEAKQNLGNAKQKQ 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	4e-63
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	5e-61
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-51
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-49
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	8e-45
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	4e-39
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-31
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-22
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	4e-21
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	7e-21
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	9e-21
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	9e-21
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	5e-20
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	9e-20
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	7e-19
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-18
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	9e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	8e-14
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-13
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	6e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-09
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	2e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-04
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	5e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	4e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-05
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	5e-06
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	4e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	8e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-04

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  201 bits (512), Expect = 4e-63
 Identities = 66/211 (31%), Positives = 106/211 (50%), Gaps = 2/211 (0%)

Query: 1   MTMKKEEQATVTISAEYLC--SHEVSELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIE 58
             M++EEQ  + +   Y    + +    +  ++ L YEVTL  F K K  W+MDT EK+E
Sbjct: 207 EKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLE 266

Query: 59  ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC 118
                K  G + F+ GKY +A  +Y K    +E  +  ++ E   +    L+ +LN A C
Sbjct: 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326

Query: 119 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 178
            LKL +Y++    C K L L+  N K LYRR +A L  +E E A+ D ++ L ++P N+ 
Sbjct: 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386

Query: 179 VKLVYMELKDKQREYAKYQAEIFGTMLSKMG 209
            +L     + K +E+ +    I+  M  K  
Sbjct: 387 ARLQISMCQKKAKEHNERDRRIYANMFKKFA 417

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  192 bits (490), Expect = 5e-61
 Identities = 67/211 (31%), Positives = 109/211 (51%), Gaps = 2/211 (0%)

Query: 1   MTMKKEEQATVTISAEYLCSHEVSEL--VSADSVLHYEVTLIDFTKEKPFWKMDTHEKIE 58
             M+K E + V +   Y       E   +  ++ L YE+ L  F K K  W+M++ EK+E
Sbjct: 86  QRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLE 145

Query: 59  ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC 118
                K  G + F+ GKY +A  +Y+K    +E+  SF+++E  +A  LRL+ +LN A C
Sbjct: 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205

Query: 119 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 178
            LKL+ +S     C K LEL+  N K L RR +AHL  ++ E A AD ++ L + PNN+ 
Sbjct: 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265

Query: 179 VKLVYMELKDKQREYAKYQAEIFGTMLSKMG 209
            K      + + R     + +++  M  ++ 
Sbjct: 266 AKTQLAVCQQRIRRQLAREKKLYANMFERLA 296

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  168 bits (427), Expect = 1e-51
 Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 8/216 (3%)

Query: 1   MTMKKEEQATVTISAEYLCSHEVSE---LVSADSVLHYEVTLIDFTKEKPF---WKMDTH 54
            +MK  E+A V +  E     E +     V   + L YEV +I F + K       M   
Sbjct: 114 ASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVE 173

Query: 55  EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF--TDDEKHQANGLRLSCY 112
           E+I A +R+K DGN LF+  K   A ++YE A   +     F      +  A  ++  C+
Sbjct: 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCH 233

Query: 113 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172
           LN AAC +KL+ Y E    C  VL  E  N KAL+RR +A  +  +++ A  D ++A   
Sbjct: 234 LNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293

Query: 173 DPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208
            P+++ ++     L ++++   + Q E++  +    
Sbjct: 294 APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  159 bits (404), Expect = 1e-49
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 1/167 (0%)

Query: 44  KEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEK-H 102
            +K  +     EK+++    K +GN  F+  +   A  KY++A         + D     
Sbjct: 22  AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD 81

Query: 103 QANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKA 162
           +   + +SC LN A C  K +DY +     +KVL+++  NVKALY+   A++    LE+A
Sbjct: 82  KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 141

Query: 163 EADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG 209
           + ++ +A +++PNN  ++  Y    +K +E  K     FG M  K  
Sbjct: 142 KENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  145 bits (368), Expect = 8e-45
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 4/158 (2%)

Query: 51  MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH---HSFTDDEKHQANGL 107
               +K+++ E  +  GN LF    Y  A   Y  A   ++         + E  + +  
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIK 167
            +  Y N + C L + D  E     ++VL+ E  N KAL+RR++A +   +L++AE D+K
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121

Query: 168 RALTIDPNNR-VVKLVYMELKDKQREYAKYQAEIFGTM 204
             L   P    VV      + +++ E        +  M
Sbjct: 122 LLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKM 159

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  136 bits (345), Expect = 4e-39
 Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 1/167 (0%)

Query: 41  DFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDE 100
           DF ++      D  + +   E  K+ GN  F++  +  A KKY K  + +E   +  +D 
Sbjct: 204 DFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA 263

Query: 101 KHQA-NGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL 159
                  + LSC LN  ACKLK+ D+      C + LE++P N KALYRR+Q      E 
Sbjct: 264 DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY 323

Query: 160 EKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 206
           ++A AD+K+A  I P ++ ++   +++K K +     +   +  M +
Sbjct: 324 DQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA 370

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  111 bits (280), Expect = 1e-31
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 12/138 (8%)

Query: 52  DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSC 111
                  + E+ + +GN LF+ G Y  A   Y +A   +    +  D             
Sbjct: 20  PATPGASSVEQLRKEGNELFKCGDYGGALAAYTQA---LGLDATPQDQAV---------L 67

Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
           + N AAC LKLEDY +  +  +K +E +  +VKALYRRSQA  K   L++A  D++R ++
Sbjct: 68  HRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127

Query: 172 IDPNNRVVKLVYMELKDK 189
           ++P N+V +     +   
Sbjct: 128 LEPKNKVFQEALRNISGP 145

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 88.6 bits (220), Expect = 1e-22
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 15/147 (10%)

Query: 52  DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSC 111
                ++  E  K   N  F+A  Y  A K Y +A ++   +  +               
Sbjct: 5   PADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY--------------- 49

Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
           Y N +   L+ E Y       T+ +EL+   +K  YRR+ +++   +   A  D +  + 
Sbjct: 50  YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVK 109

Query: 172 IDPNNRVVKLVYMELKDKQREYAKYQA 198
           + P+++  K+ Y E     ++ A  +A
Sbjct: 110 VKPHDKDAKMKYQECNKIVKQKAFERA 136

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 83.9 bits (208), Expect = 4e-21
 Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 15/146 (10%)

Query: 54  HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYL 113
           H K  + +  K  GN LF   KY  A+  Y +A                  N L    Y 
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR---------------NPLVAVYYT 47

Query: 114 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 173
           N A C LK++   +  + C + LEL+  +VKA +   Q  L+    ++A A+++RA ++ 
Sbjct: 48  NRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107

Query: 174 PNNRVVKLVYMELKDKQREYAKYQAE 199
              R+     +    +  +  ++ + 
Sbjct: 108 KEQRLNFGDDIPSALRIAKKKRWNSI 133

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 83.1 bits (206), Expect = 7e-21
 Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 15/131 (11%)

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
              K+ GN  F+ G Y +A K Y +A K                       Y N AAC  
Sbjct: 17  LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL---------------YSNRAACYT 61

Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
           KL ++      C + ++LEP  +K   R++ A     +  KA    ++AL +D + +   
Sbjct: 62  KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAA 121

Query: 181 LVYMELKDKQR 191
             Y      Q 
Sbjct: 122 DGYQRCMMAQY 132

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 82.6 bits (205), Expect = 9e-21
 Identities = 29/133 (21%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 57  IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA 116
           +E     K  GN     G    A + Y +A K+        D   H         Y N +
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNH-------VLYSNRS 45

Query: 117 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           A   K  DY +      K ++L+P   K   R++ A    +  E+A+   +  L  + NN
Sbjct: 46  AAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

Query: 177 RVVKLVYMELKDK 189
             +K     ++ +
Sbjct: 106 PQLKEGLQNMEAR 118

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 82.7 bits (205), Expect = 9e-21
 Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 15/130 (11%)

Query: 58  EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAA 117
           E  + +K+ GN  F+ G Y  A + Y +A K    +                  Y N AA
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAIL---------------YSNRAA 55

Query: 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177
           C  KL ++      C   + L+   +K   R++   +   E  KA+   + AL +DP+N 
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

Query: 178 VVKLVYMELK 187
             +       
Sbjct: 116 EAREGVRNCL 125

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 80.7 bits (200), Expect = 5e-20
 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 15/142 (10%)

Query: 51  MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 110
           + + E     ER K +GN   +   +  A   Y KA ++   +  +              
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY-------------- 48

Query: 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 170
            + N AA   KL +Y+     C + + ++P   KA  R   A    ++  +A A  K+AL
Sbjct: 49  -FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107

Query: 171 TIDPNNRVVKLVYMELKDKQRE 192
            +DP+N   K      + K RE
Sbjct: 108 ELDPDNETYKSNLKIAELKLRE 129

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 85.5 bits (212), Expect = 9e-20
 Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 15/143 (10%)

Query: 57  IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA 116
           ++  E  K   N  F+A  Y  A K Y +A ++   +  +               Y N +
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY---------------YGNRS 47

Query: 117 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
              L+ E Y       T+ +EL+   +K  YRR+ +++   +   A  D +  + + P++
Sbjct: 48  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107

Query: 177 RVVKLVYMELKDKQREYAKYQAE 199
           +  K+ Y E     ++ A  +A 
Sbjct: 108 KDAKMKYQECNKIVKQKAFERAI 130

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 77.7 bits (192), Expect = 7e-19
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 19/137 (13%)

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
           E  + +G   F    +  A K Y +  K                       Y N AA   
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG---------------YSNRAAALA 49

Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR--- 177
           KL  + E  + C K +E +P  V+A  R++ A +   E   A   +  A T D       
Sbjct: 50  KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS 109

Query: 178 -VVKLVYMELKDKQREY 193
              ++  +  K  Q+ +
Sbjct: 110 SAREIDQLYYKASQQRF 126

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 77.5 bits (191), Expect = 2e-18
 Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 17/137 (12%)

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
           ++ K +GN      +Y +A   Y +A  I   +  +                 N AA   
Sbjct: 12  DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIY---------------LSNRAAAYS 56

Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR--V 178
               + + +        ++P   KA  R   A    ++ + A+   ++ +  + N     
Sbjct: 57  ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116

Query: 179 VKLVYMELKDKQREYAK 195
           +K      K K  E  +
Sbjct: 117 MKRGLETTKRKIEEANR 133

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 78.4 bits (193), Expect = 9e-18
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 15/139 (10%)

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
           +  K  GN LF   KY  A+  Y +A         +               Y N A C L
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YTNRALCYL 49

Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
           K++   +  + C + LEL+  +VKA +   Q  L+    ++A A+++RA ++    R+  
Sbjct: 50  KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109

Query: 181 LVYMELKDKQREYAKYQAE 199
              +    +  +  ++ + 
Sbjct: 110 GDDIPSALRIAKKKRWNSI 128

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 76.2 bits (188), Expect = 1e-16
 Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 15/142 (10%)

Query: 54  HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYL 113
           +++++   +       L R G+Y  A+ KYE   K            +       +    
Sbjct: 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-----------EPSVAEYTVRSKE 276

Query: 114 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 173
               C  K E   E   +C++VL++EP NV AL  R++A+L     ++A  D + A   +
Sbjct: 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336

Query: 174 PNNRVVK----LVYMELKDKQR 191
            N++ ++         LK  Q+
Sbjct: 337 ENDQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 62.7 bits (153), Expect = 6e-12
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 15/137 (10%)

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
           E+    G  L  AG+   A  ++  A           D + + A       Y   A   L
Sbjct: 4   EKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIA-------YYRRATVFL 48

Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
            +          TKV+ L+     A  +R    LK  +L++AE D K+ L  +P+ +  K
Sbjct: 49  AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK 108

Query: 181 LVYMELKDKQREYAKYQ 197
               +L           
Sbjct: 109 EAESQLVKADEMQRLRS 125

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 61.9 bits (151), Expect = 9e-12
 Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 21/154 (13%)

Query: 56  KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNN 115
           K +  +R +      F    Y  A    +K  ++             +            
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAEL-------RELR 160

Query: 116 AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175
           A C +K  +  +  S      +L+  N +A Y+ S  + +  + E + ++++  L +D +
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220

Query: 176 NRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG 209
           ++     Y ++K   +             L + G
Sbjct: 221 HKRCFAHYKQVKKLNKLIES------AEELIRDG 248

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 17/143 (11%), Positives = 35/143 (24%), Gaps = 34/143 (23%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
             +    GK   A     K   +          +   A        L      LK     
Sbjct: 44  ATVFLAMGKSKAALPDLTKVIAL--------KMDFTAA-------RLQRGHLLLKQGKLD 88

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQ---------------AHLKTSELEKAEADIKRALT 171
           E      KVL+  P   +     SQ                    ++   A   + + L 
Sbjct: 89  EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148

Query: 172 IDPNNRVVKL----VYMELKDKQ 190
           +   +  ++      +++  + +
Sbjct: 149 VCVWDAELRELRAECFIKEGEPR 171

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 75.1 bits (185), Expect = 3e-16
 Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 11/142 (7%)

Query: 54  HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYL 113
           +++++   +       L R G+Y  A+ KYE   K            +       +    
Sbjct: 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-----------EPSIAEYTVRSKE 299

Query: 114 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 173
               C  K E   E   +C++VL++EP NV AL  R++A+L     ++A  D + A   +
Sbjct: 300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359

Query: 174 PNNRVVKLVYMELKDKQREYAK 195
            N++ ++    + +   ++  K
Sbjct: 360 ENDQQIREGLEKAQRLLKQSQK 381

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 70.9 bits (174), Expect = 1e-14
 Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 15/143 (10%)

Query: 55  EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLN 114
           + +   E+    G  L  AG+   A  ++  A   ++                    Y  
Sbjct: 21  QSMADVEKHLELGKKLLAAGQLADALSQFHAA---VDGDPDNYI------------AYYR 65

Query: 115 NAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 174
            A   L +          TKV++L+     A  +R    LK  +L++AE D K+ L  +P
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125

Query: 175 NNRVVKLVYMELKDKQREYAKYQ 197
           +    K    +L           
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRS 148

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 21/143 (14%), Positives = 52/143 (36%), Gaps = 15/143 (10%)

Query: 56  KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNN 115
           K +  +R +      F +G Y  A    +K  ++  +                       
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL---------------RELR 183

Query: 116 AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175
           A C +K  +  +  S      +L+  N +A Y+ S  + +  + E + ++++  L +D +
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243

Query: 176 NRVVKLVYMELKDKQREYAKYQA 198
           ++     Y ++K   +     + 
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEE 266

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 20/142 (14%), Positives = 39/142 (27%), Gaps = 30/142 (21%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
             +    GK   A     K  ++          +   A        L      LK     
Sbjct: 67  ATVFLAMGKSKAALPDLTKVIQL--------KMDFTAA-------RLQRGHLLLKQGKLD 111

Query: 127 ETSSLCTKVLELEPLN---------------VKALYRRSQAHLKTSELEKAEADIKRALT 171
           E      KVL+  P                 ++ L  ++     + +   A A + + L 
Sbjct: 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171

Query: 172 IDPNNRVVKLVYMELKDKQREY 193
           +   +  ++ +  E   K+ E 
Sbjct: 172 VCVWDAELRELRAECFIKEGEP 193

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 64.6 bits (158), Expect = 8e-14
 Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 25/141 (17%)

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
            ++K  GN  ++   +  A K Y+KA ++   + ++                 N AA   
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY---------------ITNQAAVYF 49

Query: 121 KLEDYSETSSLCTKVLELEPLN-------VKALYRRSQAHLKTSELEKAEADIKRALTID 173
           +  DY++   LC K +E+   N        KA  R   ++ K  + + A     ++L   
Sbjct: 50  EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109

Query: 174 PNNRVVKLVY---MELKDKQR 191
               V+K        LK+++R
Sbjct: 110 RTPDVLKKCQQAEKILKEQER 130

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 22/135 (16%)

Query: 53  THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCY 112
           ++   +A   +K  GN  ++   + +A   Y+KA ++   + +F               Y
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF---------------Y 45

Query: 113 LNNAACKLKLEDYSETSSLCTKVLELEPLN-------VKALYRRSQAHLKTSELEKAEAD 165
            N AA   + + ++E    C K +E+            KA+ R   A  K ++L  A   
Sbjct: 46  NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105

Query: 166 IKRALTIDPNNRVVK 180
             R+L+   +  +VK
Sbjct: 106 FHRSLSEFRDPELVK 120

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 115 NAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 174
           NAA K K  D+ +      K +EL+P N+     ++  + +  +  +     ++A+ +  
Sbjct: 16  NAAYKQK--DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73

Query: 175 NNRVVKLVYME 185
             R    +  +
Sbjct: 74  ETRADYKLIAK 84

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 65.3 bits (160), Expect = 3e-13
 Identities = 29/128 (22%), Positives = 43/128 (33%), Gaps = 19/128 (14%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G   F    +  A K Y +  K           E  +        Y N AA   KL  + 
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKR--------APEDARG-------YSNRAAALAKLMSFP 190

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK----LV 182
           E  + C K +E +P  V+A  R++ A +   E   A   +  A T D           + 
Sbjct: 191 EAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250

Query: 183 YMELKDKQ 190
            +  K  Q
Sbjct: 251 QLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 58.7 bits (143), Expect = 8e-11
 Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 19/137 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           GN  ++A ++  A + Y KA    E H   T                N AA + +  +Y 
Sbjct: 12  GNKFYKARQFDEAIEHYNKA---WELHKDIT-------------YLNNRAAAEYEKGEYE 55

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV---VKLVY 183
              S     +E            S++  +         D+K+ +     +        + 
Sbjct: 56  TAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADIL 115

Query: 184 MELKDKQREYAKYQAEI 200
            +L++ ++E  K +AE 
Sbjct: 116 TKLRNAEKELKKAEAEA 132

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 11/110 (10%), Positives = 24/110 (21%), Gaps = 16/110 (14%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                R G  +      +K  +           +K              A    KL +  
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEY---------YQKSLT-------EHRTADILTKLRNAE 122

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           +          + P   +      + +   S+   A       +   P +
Sbjct: 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.1 bits (146), Expect = 5e-11
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 18/138 (13%)

Query: 64  KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE 123
           K  GN  FR  KY  A K Y  A ++          E           Y N +AC + + 
Sbjct: 10  KDKGNQFFRNKKYDDAIKYYNWALEL---------KEDPVF-------YSNLSACYVSVG 53

Query: 124 DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKR-ALTIDPNNRVVKLV 182
           D  +   + TK LEL+P   K L RR+ A+    +   A  D+   +L  D N+  ++  
Sbjct: 54  DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEP- 112

Query: 183 YMELKDKQREYAKYQAEI 200
            +E    ++  +K + + 
Sbjct: 113 MLERNLNKQAMSKLKEKF 130

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.8 bits (145), Expect = 7e-11
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 16/110 (14%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G   F       A +  +KA ++           +  +       Y+  A       D +
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIEL---------FPRVNS-------YIYMALIMADRNDST 287

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E  +   K L+L+  N    Y R Q +      ++A  D  +A  +DP N
Sbjct: 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 56.7 bits (137), Expect = 7e-10
 Identities = 19/141 (13%), Positives = 50/141 (35%), Gaps = 15/141 (10%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK--LED 124
             +L     + +A K+Y+ A ++        +++                       +E+
Sbjct: 379 AEILTDKNDFDKALKQYDLAIEL--------ENKLDGIYVGIAPLVGKATLLTRNPTVEN 430

Query: 125 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK--LV 182
           + E ++L  K  +L+P + +A    +Q  L+  ++++A    + +  +          + 
Sbjct: 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490

Query: 183 YMELKDKQ---REYAKYQAEI 200
           + E    Q   R       +I
Sbjct: 491 FAEAAKVQQRIRSDPVLAKKI 511

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
             ++            ++KA K+        D             Y +       L++Y 
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKL--------DSNNSSV-------YYHRGQMNFILQNYD 321

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           +      K  EL+P N+    + +    + ++ +  E     A    P  
Sbjct: 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 15/119 (12%), Positives = 32/119 (26%), Gaps = 24/119 (20%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
             L +R  K+      + +A +           E  +            A       D+ 
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRK--------FPEAPEV-------PNFFAEILTDKNDFD 389

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTS---------ELEKAEADIKRALTIDPNN 176
           +        +ELE          +    K +            +A   +++A  +DP +
Sbjct: 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G + F    Y +A K ++KA ++        D E           Y+  A    +   + 
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKEL--------DPENIFP-------YIQLACLAYRENKFD 355

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           +  +L ++     P   +     ++     ++ +KA      A+ ++   
Sbjct: 356 DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 6/131 (4%)

Query: 63  KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL 122
                   F   K       Y+++    E      +   +       S    + +     
Sbjct: 160 SVTSMASFFGIFKPELTFANYDES---NEADKELMNGLSNLYKRSPESYDKADESFTKAA 216

Query: 123 EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK-- 180
             + E      +  +L+     +L          ++   A  DIK+A+ + P        
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYM 276

Query: 181 -LVYMELKDKQ 190
            L+  +  D  
Sbjct: 277 ALIMADRNDST 287

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
             +      + + Y +        LEL+   V      S  ++   +L+K      +AL 
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALE 67

Query: 172 IDPNN 176
           + P+ 
Sbjct: 68  LKPDY 72

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 56.2 bits (136), Expect = 6e-11
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
           E++K  GN LF+ G Y  A   Y++                          Y N A   +
Sbjct: 5   EKQKEQGNSLFKQGLYREAVHCYDQLITA---------------QPQNPVGYSNKAMALI 49

Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT-IDPNNRVV 179
           KL +Y++   +C + L           R      +    + A   ++  +  +D      
Sbjct: 50  KLGEYTQAIQMCQQGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVVEVDELPEGY 108

Query: 180 K 180
            
Sbjct: 109 D 109

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 17/124 (13%), Positives = 30/124 (24%), Gaps = 17/124 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G          R      +A  +          E+  A         ++   K  LE   
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGL--------TPEQVVA-------IASHDGGKQALETVQ 429

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186
               +  +   L P  V A+            +    +    AL    N+ +V      L
Sbjct: 430 RLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLV--ALACL 487

Query: 187 KDKQ 190
             + 
Sbjct: 488 GGRP 491

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.0 bits (130), Expect = 6e-09
 Identities = 15/110 (13%), Positives = 29/110 (26%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G          R      +A  +          ++  A         +N   K  LE   
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGL--------TPQQVVA-------IASNGGGKQALETVQ 259

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+   S        +++    + +A  + P  
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.0 bits (130), Expect = 6e-09
 Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 19/138 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                      R      +A  +          E+  A         +N   K  LE   
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGL--------TPEQVVA-------IASNGGGKQALETVQ 395

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV----KLV 182
               +  +   L P  V A+            +++    + +A  + P   V        
Sbjct: 396 RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 455

Query: 183 YMELKDKQREYAKYQAEI 200
              L+    + ++    +
Sbjct: 456 RPALESIVAQLSRPDPAL 473

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 13/110 (11%), Positives = 26/110 (23%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                             +A  +          E+  A         +N   K  LE   
Sbjct: 147 DGGKQALETVQALLPVLCQAHGL--------TPEQVVA-------IASNGGGKQALETVQ 191

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+            +++    + +A  + P  
Sbjct: 192 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 241

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 13/110 (11%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G          R      +A  +          ++  A         ++   K  LE   
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGL--------TPQQVVA-------IASHDGGKQALETVQ 361

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+            +++    + +A  + P  
Sbjct: 362 RLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 13/110 (11%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                      R      +A  +          E+  A         ++   K  LE   
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGL--------TPEQVVA-------IASHDGGKQALETVQ 157

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+            +++    + +A  + P  
Sbjct: 158 ALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 14/110 (12%), Positives = 29/110 (26%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G          R      +A  +          ++  A         +N+  K  LE   
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGL--------TPQQVVA-------IASNSGGKQALETVQ 293

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+            +++    + +A  + P  
Sbjct: 294 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 343

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 16/138 (11%), Positives = 31/138 (22%), Gaps = 19/138 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                      R      +A  +          ++  A         ++   K  LE   
Sbjct: 79  DGGKQALETVQRLLPVLCQAHGL--------TPQQVVA-------IASHDGGKQALETVQ 123

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV----KLV 182
               +  +   L P  V A+            ++     + +A  + P   V        
Sbjct: 124 RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGG 183

Query: 183 YMELKDKQREYAKYQAEI 200
              L+  QR         
Sbjct: 184 KQALETVQRLLPVLCQAH 201

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.9 bits (122), Expect = 7e-08
 Identities = 13/110 (11%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                      R      +A  +          ++  A         +N   K  LE   
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGL--------TPQQVVA-------IASNGGGKQALETVQ 327

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+            +++    + +A  + P  
Sbjct: 328 RLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 14/110 (12%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G          R      +A  +          ++  A         +N   K  LE   
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGL--------TPQQVVA-------IASNGGGKQALETVQ 225

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+            +++    + +A  + P  
Sbjct: 226 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 275

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 9/65 (13%), Positives = 20/65 (30%)

Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
             ++   K  LE       +  +   L P  V A+            +++    + +A  
Sbjct: 75  IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 134

Query: 172 IDPNN 176
           + P  
Sbjct: 135 LTPEQ 139

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 16/110 (14%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G   F       A    +++  +              +       Y+  A      E+  
Sbjct: 250 GIFHFLKNNLLDAQVLLQESINL---------HPTPNS-------YIFLALTLADKENSQ 293

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E      K ++L P      Y R Q +    + + A+ D ++A +++P N
Sbjct: 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 16/146 (10%)

Query: 64  KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE 123
           K+ GN  F A  +  A K Y+ A ++      F               Y N +AC +   
Sbjct: 29  KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF---------------YSNISACYISTG 73

Query: 124 DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 183
           D  +     TK LE++P + KAL RR+ A+        A  D+   L+++ +     +  
Sbjct: 74  DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEP 132

Query: 184 MELKDKQREYAKYQAEIFGTMLSKMG 209
           M  ++  ++  K   E       +  
Sbjct: 133 MLERNLNKQAMKVLNENLSKDEGRGS 158

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 1/111 (0%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKII-EFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY 125
             +L   G +  A K+Y+ A ++                    L+   +    +L  E +
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 126 SETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           +    L TK  EL+P + +A    +Q  L+  ++++A    + +  +    
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
              L          K ++KA   ++ +  +               Y +       L+DY 
Sbjct: 283 ALTLADKENSQEFFKFFQKA---VDLNPEYPP------------TYYHRGQMYFILQDYK 327

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
                  K   L P NV    + +    K  +  ++EA         P  
Sbjct: 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 11/103 (10%)

Query: 74  GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT 133
           G +        +   +           +  A         N        ++++E      
Sbjct: 1   GSHMNGEPDIAQLKGLSP------SQRQAYAVQ-----LKNRGNHFFTAKNFNEAIKYYQ 49

Query: 134 KVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
             +EL+P         S  ++ T +LEK      +AL I P++
Sbjct: 50  YAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G + F    Y  A + ++KA  +        + E           Y+  A    K   ++
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSL--------NPENVYP-------YIQLACLLYKQGKFT 361

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E+ +   +     P   +     ++      + + A      A  ++   
Sbjct: 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 16/142 (11%), Positives = 39/142 (27%), Gaps = 12/142 (8%)

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDE---------KHQANGLRLSC 111
           + +     +L            ++   ++   + S   D          +   +      
Sbjct: 152 KDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY 211

Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
            + N       + Y    S  T    L      AL      H   + L  A+  ++ ++ 
Sbjct: 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271

Query: 172 IDPNNRV-VKL--VYMELKDKQ 190
           + P     + L     + ++ Q
Sbjct: 272 LHPTPNSYIFLALTLADKENSQ 293

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 14/126 (11%), Positives = 29/126 (23%), Gaps = 31/126 (24%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
             LL++ GK+  +   + +         +  +                 A       D+ 
Sbjct: 351 ACLLYKQGKFTESEAFFNET---KLKFPTLPE------------VPTFFAEILTDRGDFD 395

Query: 127 ETSSLCTKVLELEPLNVKALYRR----------------SQAHLKTSELEKAEADIKRAL 170
                      LE +  K                         L   +   A   + +A 
Sbjct: 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455

Query: 171 TIDPNN 176
            +DP +
Sbjct: 456 ELDPRS 461

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 12/135 (8%), Positives = 33/135 (24%), Gaps = 15/135 (11%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
            +     G         ++    +  H    +                    +   + ++
Sbjct: 30  ADAELGMGDTTAGEMAVQRG---LALHPGHPE------------AVARLGRVRWTQQRHA 74

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186
           E + L  +  +  P +         A     + E A A   RA  + P    +    +  
Sbjct: 75  EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNW 134

Query: 187 KDKQREYAKYQAEIF 201
           + +  ++        
Sbjct: 135 RRRLCDWRALDVLSA 149

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 15/104 (14%)

Query: 73  AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC 132
                R   +   A   +                     +L  A  +L + D +      
Sbjct: 2   TADGPRELLQLRAA---VRHRPQDFV------------AWLMLADAELGMGDTTAGEMAV 46

Query: 133 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
            + L L P + +A+ R  +         +A   +++A    P +
Sbjct: 47  QRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 55.1 bits (133), Expect = 8e-10
 Identities = 15/111 (13%), Positives = 41/111 (36%), Gaps = 1/111 (0%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKI-IEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY 125
            +    AG+  +A   + +   + I+    +      + + +        A    K  +Y
Sbjct: 11  VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY 70

Query: 126 SETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
            +      ++L+  P NV  L   ++  +   + + A    ++ L ++ +N
Sbjct: 71  DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.4 bits (126), Expect = 8e-09
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 17/130 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA-ACKLKLEDY 125
             +    G+   A + YEK  ++         +  +      L+  +       L  E  
Sbjct: 95  AEMQVCRGQEKDALRMYEKILQL---------EADN------LAANIFLGNYYYLTAEQE 139

Query: 126 SETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 185
            +      K L        A YR   + L T+  EKA   +++ +   P+    K +  +
Sbjct: 140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD-K 198

Query: 186 LKDKQREYAK 195
           +   ++E  +
Sbjct: 199 ILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 16/130 (12%)

Query: 48  FWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGL 107
           +W         + +          +   Y +A   Y++  +             +     
Sbjct: 42  YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---------APNN----- 87

Query: 108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELE-KAEADI 166
            + C    A  ++      +   +  K+L+LE  N+ A       +  T+E E K     
Sbjct: 88  -VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETD 146

Query: 167 KRALTIDPNN 176
            + L+     
Sbjct: 147 YKKLSSPTKM 156

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 23/134 (17%), Positives = 39/134 (29%), Gaps = 10/134 (7%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G + F+ G++  A K +  A + I+   +    +K +          N      KL+ Y+
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE------PLLNNLGHVCRKLKKYA 253

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV----KLV 182
           E      + L L P N          H      E A      AL +  ++          
Sbjct: 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313

Query: 183 YMELKDKQREYAKY 196
                     Y   
Sbjct: 314 IEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 16/111 (14%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
               +    +    K      +   FH                SC   +    ++L   +
Sbjct: 29  AERHYYNCDFKMCYKLTSVVMEKDPFH---------------ASCLPVHIGTLVELNKAN 73

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL-EKAEADIKRALTIDPNN 176
           E   L  K+++L P N  + +     +L      E A   + +A T++   
Sbjct: 74  ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY 124

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 11/78 (14%), Positives = 27/78 (34%)

Query: 99  DEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSE 158
            E        L   ++ A       D+     L + V+E +P +   L       ++ ++
Sbjct: 12  PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNK 71

Query: 159 LEKAEADIKRALTIDPNN 176
             +      + + + P+N
Sbjct: 72  ANELFYLSHKLVDLYPSN 89

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 8/110 (7%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G + F       A   ++ A  +          +         + + N      KL+ Y 
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLL--------VKKTQSNEKPWAATWANLGHAYRKLKMYD 533

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
                  + L L   +       +  +L       A   +  +L I PN 
Sbjct: 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
            + LF   ++        K  +I               +   L  Y  + A   +  + +
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEI---------------DPYNLDVYPLHLASLHESGEKN 356

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           +   +   +++  P            +L  +++ +A     ++ T+DP  
Sbjct: 357 KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 3/101 (2%)

Query: 76  YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 135
           Y     K     ++       +     + +       L  A        + +  ++ TK+
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKS---SDLLLCKADTLFVRSRFIDVLAITTKI 331

Query: 136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           LE++P N+        +  ++ E  K        +   P  
Sbjct: 332 LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 22/132 (16%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKI----------------------IEFHHSFTDDEKHQA 104
           G +      + RA + Y++A  +                       +           + 
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266

Query: 105 NGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEA 164
           +   L         K   ED    +      +     +   L  ++      S      A
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326

Query: 165 DIKRALTIDPNN 176
              + L IDP N
Sbjct: 327 ITTKILEIDPYN 338

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 11/110 (10%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G       K   A + + K+         F               ++  A       ++ 
Sbjct: 380 GIYYLCVNKISEARRYFSKS---STMDPQFGP------------AWIGFAHSFAIEGEHD 424

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           +  S  T    L              H++   +  A   ++ +  +   +
Sbjct: 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 51.7 bits (124), Expect = 7e-09
 Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G   ++AGK+  A K ++    +  +   +               +L   AC+  L  Y 
Sbjct: 25  GFNQYQAGKWDDAQKIFQALCMLDHYDARY---------------FLGLGACRQSLGLYE 69

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           +     +    ++    +  +  ++ HL+  +L+ AE+    A  +    
Sbjct: 70  QALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 14/138 (10%)

Query: 51  MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 110
           M   +++        D      AG+Y  A+    +A   +E  H+   +E     G    
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRA---MEISHTMPPEEAFDHAGFDAF 58

Query: 111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN-----------VKALYRRSQAHLKTSEL 159
           C+   A     L  + E      K L                 + A+Y R+ A       
Sbjct: 59  CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG 118

Query: 160 EKAEADIKRALTIDPNNR 177
            +A  + K+ + +    +
Sbjct: 119 AEAMPEFKKVVEMIEERK 136

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 25/126 (19%), Positives = 38/126 (30%), Gaps = 19/126 (15%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
            N L   G    A   Y  A   +    +  D               N A  K +  +  
Sbjct: 278 ANALKEKGSVAEAEDCYNTA---LRLCPTHAD------------SLNNLANIKREQGNIE 322

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK----LV 182
           E   L  K LE+ P    A    +    +  +L++A    K A+ I P            
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

Query: 183 YMELKD 188
             E++D
Sbjct: 383 LKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
              L  AG    A + Y  A +         + + +           +       L    
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQY--------NPDLYCV-------RSDLGNLLKALGRLE 152

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E  +   K +E +P    A            E+  A    ++A+T+DPN 
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           GN+    G+   A + Y  A ++          +           Y+N AA  +   D  
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRL--------KPDFIDG-------YINLAAALVAAGDME 118

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
                    L+  P                  LE+A+A   +A+   PN 
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G +    G+ W A   +EKA   +    +F D             Y+N      +   + 
Sbjct: 176 GCVFNAQGEIWLAIHHFEKA---VTLDPNFLD------------AYINLGNVLKEARIFD 220

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
              +   + L L P +       +  + +   ++ A    +RA+ + P+ 
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
             + +  G    A   Y +A   IE    F D             Y N A    +    +
Sbjct: 244 ACVYYEQGLIDLAIDTYRRA---IELQPHFPD------------AYCNLANALKEKGSVA 288

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E        L L P +  +L   +    +   +E+A    ++AL + P  
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 12/65 (18%), Positives = 24/65 (36%)

Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
            +  A  + +  D+      C ++   EP N   L   S  H +   L+++      A+ 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 172 IDPNN 176
            +P  
Sbjct: 62  QNPLL 66

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 13/110 (11%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
            +  ++AG +  A +   +  +          +  +          L  ++   +     
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQ---------EPDN------TGVLLLLSSIHFQCRRLD 50

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
            ++   T  ++  PL  +A       + +  +L++A    + AL + P+ 
Sbjct: 51  RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.9 bits (115), Expect = 6e-07
 Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
            ++ F+  +  R++     A   I+ +    +             Y N      +     
Sbjct: 40  SSIHFQCRRLDRSAHFSTLA---IKQNPLLAE------------AYSNLGNVYKERGQLQ 84

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E        L L+P  +      + A +   ++E A      AL  +P+ 
Sbjct: 85  EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.5 bits (114), Expect = 8e-07
 Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           GNLL   G+   A   Y KA   IE   +F               + N         +  
Sbjct: 142 GNLLKALGRLEEAKACYLKA---IETQPNFAV------------AWSNLGCVFNAQGEIW 186

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
                  K + L+P  + A         +    ++A A   RAL++ PN+
Sbjct: 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.5 bits (114), Expect = 9e-07
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           GN+L  A  + RA   Y +A   +    +                + N A    +     
Sbjct: 210 GNVLKEARIFDRAVAAYLRA---LSLSPNHAV------------VHGNLACVYYEQGLID 254

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
                  + +EL+P    A    + A  +   + +AE     AL + P +
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G +L + G+   A ++Y+ A           D  +          Y    +      ++ 
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDR--------DTTRLDM-------YGQIGSYFYNKGNFP 125

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
                  K +     + K  Y   QA+    E  KA++   + L + PN 
Sbjct: 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 9/110 (8%), Positives = 25/110 (22%), Gaps = 12/110 (10%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
               +   KY  A K  E     +    + + D            +       +K    S
Sbjct: 44  AVCYYELAKYDLAQKDIETYFSKVNATKAKSAD------------FEYYGKILMKKGQDS 91

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
                    ++ +   +    +             A   +++ +     +
Sbjct: 92  LAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 29/142 (20%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G   +   +Y +A   + K    +E   +                YL  A      +  +
Sbjct: 149 GQAYYYNKEYVKADSSFVKV---LELKPNIYI------------GYLWRARANAAQDPDT 193

Query: 127 ETS---SLCTKVLELEPLN--------VKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175
           +         K++E+            ++A    +  +    +  KA+A  K  L +DP 
Sbjct: 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253

Query: 176 NRVVKLVYMELKDKQREYAKYQ 197
           N   K     LK K   +  + 
Sbjct: 254 N---KKAIDGLKMKLEHHHHHH 272

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 14/113 (12%), Positives = 25/113 (22%), Gaps = 18/113 (15%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
            + LF+   Y  A + + K                          Y   A C  +L  Y 
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYI-------YNRRAVCYYELAKYD 54

Query: 127 E---TSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
                       +              +  +K  +   A    + A+  D   
Sbjct: 55  LAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR 107

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 18/113 (15%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G+  +  G +  A +  EK    I    +                +          ++Y 
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQ---IRPTTTDPKV------------FYELGQAYYYNKEYV 159

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLK---TSELEKAEADIKRALTIDPNN 176
           +  S   KVLEL+P        R++A+      ++   A+   ++ + +    
Sbjct: 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADI---KR 168
               A    K  +Y+E   +  K+   +  +     RR+  + + ++ + A+ DI     
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65

Query: 169 ALTIDPNN 176
            +      
Sbjct: 66  KVNATKAK 73

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 12/121 (9%), Positives = 31/121 (25%), Gaps = 15/121 (12%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
               +  G+   A   +                     +   +   +  AA     E + 
Sbjct: 43  AYDFYNKGRIEEAEVFFRFLCIY---------------DFYNVDYIMGLAAIYQIKEQFQ 87

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186
           + + L      L   +   ++   Q  L+     KA+   +  +    + ++       L
Sbjct: 88  QAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYL 147

Query: 187 K 187
            
Sbjct: 148 D 148

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 13/110 (11%), Positives = 29/110 (26%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G          R      +A  +          ++  A         ++   K  LE   
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGL--------TPDQVVA-------IASHDGGKQALETVQ 345

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+            +++    + +A  + P+ 
Sbjct: 346 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 12/110 (10%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                      R      +A  +          ++  A         ++   K  LE   
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGL--------TPDQVVA-------IASHGGGKQALETVQ 311

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+            +++    + +A  + P+ 
Sbjct: 312 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 361

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 13/110 (11%), Positives = 26/110 (23%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                      R      +A  +             Q          +N   K  LE   
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGL----------PPDQVVA-----IASNIGGKQALETVQ 277

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+            +++    + +A  + P+ 
Sbjct: 278 RLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 14/110 (12%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G          R      +A  +           +  A         +N   K  LE   
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGL--------TQVQVVA-------IASNIGGKQALETVQ 616

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+            +++    + +A  + P+ 
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 12/110 (10%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                      R      +A  +          ++  A         +N   K  LE   
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGL--------TPDQVVA-------IASNGGGKQALETVQ 684

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L    V A+   +        +++    + +A  + P+ 
Sbjct: 685 RLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ 734

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 12/110 (10%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                      R      +A  +           +  A         ++   K  LE   
Sbjct: 199 NGGKQALETVQRLLPVLCQAHGL--------TPAQVVA-------IASHDGGKQALETMQ 243

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+            +++    + +A  + P+ 
Sbjct: 244 RLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 10/65 (15%), Positives = 21/65 (32%)

Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
             +N   K  LE       +  +   L P  V A+            +++    + +A  
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHG 254

Query: 172 IDPNN 176
           + P+ 
Sbjct: 255 LPPDQ 259

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 15/110 (13%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G          R      +A  +          E+  A         +N   K  LE   
Sbjct: 674 GGGKQALETVQRLLPVLCQAHGL--------TQEQVVA-------IASNNGGKQALETVQ 718

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+            +++    + +A  + P  
Sbjct: 719 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQ 768

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 12/110 (10%), Positives = 27/110 (24%), Gaps = 16/110 (14%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G          R      +A  +          ++  A        + +   K  LE   
Sbjct: 369 GGGKQALETVQRLLPVLCQAHGL--------TPDQVVA--------IASNGGKQALETVQ 412

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+            +++    + +   + P  
Sbjct: 413 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 10/110 (9%), Positives = 23/110 (20%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                      R      +A        +                  ++   K  LE   
Sbjct: 606 IGGKQALETVQRLLPVLCQA---HGLTPAQVV------------AIASHDGGKQALETVQ 650

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+            +++    + +A  +    
Sbjct: 651 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 13/110 (11%), Positives = 28/110 (25%), Gaps = 16/110 (14%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                      R      +A  +          ++  A         +N   K  LE   
Sbjct: 335 DGGKQALETVQRLLPVLCQAHGL--------TPDQVVA-------IASNGGGKQALETVQ 379

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+            +++    + +A  + P+ 
Sbjct: 380 RLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQ 428

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 13/110 (11%), Positives = 26/110 (23%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G          R      +A  +        D               +N   K  LE   
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGL------TPDQV---------VAIASNGGGKQALETVQ 582

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L  + V A+            +++    + +A  + P  
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.9 bits (98), Expect = 9e-05
 Identities = 11/112 (9%), Positives = 27/112 (24%), Gaps = 15/112 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                      +      +A  +                  ++    +N   K  L    
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGL---------------TPDQVVAIASNIGGKQALATVQ 514

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 178
               +  +   L P  V A+            +++    + +A  + P+  V
Sbjct: 515 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 12/110 (10%), Positives = 26/110 (23%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                      R      +A  +          ++  A         +N   K  LE   
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGL--------TPDQVVA-------IASNGGGKQALETVQ 548

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +  +   L P  V A+            +++    + +A  +    
Sbjct: 549 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 10/78 (12%), Positives = 24/78 (30%)

Query: 99  DEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSE 158
               Q +  +L               ++  ++L    L L P  V A+   +        
Sbjct: 148 GPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALET 207

Query: 159 LEKAEADIKRALTIDPNN 176
           +++    + +A  + P  
Sbjct: 208 VQRLLPVLCQAHGLTPAQ 225

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 1   MTMKKEEQATVTISAEYLCSHEVSELVS--ADSVLHYEVTLIDFTKEKPFWK 50
             M+K E + V +   Y       E      ++ L YE+ L  F K K  W+
Sbjct: 229 QRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWE 280

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 13/143 (9%), Positives = 36/143 (25%), Gaps = 18/143 (12%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G  + +      A+  +E   +           E+ +A       + +    + + E   
Sbjct: 28  GLSMLKLANLAEAALAFEAVCQA--------APEREEA-------WRSLGLTQAENEKDG 72

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186
                      L+P ++      + +H        A A ++  L   P     + +    
Sbjct: 73  LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY---EQLGSVN 129

Query: 187 KDKQREYAKYQAEIFGTMLSKMG 209
                +      +      +   
Sbjct: 130 LQADVDIDDLNVQSEDFFFAAPN 152

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 12/110 (10%), Positives = 31/110 (28%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                       A             +             +      +         +Y 
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E  +L    LE+ P + +        +  ++  + A A+++RA+ + P++
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 15/103 (14%)

Query: 74  GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT 133
           G   + +  Y   A     +H                  +      LKL + +E +    
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHE---------------NPMEEGLSMLKLANLAEAALAFE 45

Query: 134 KVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
            V +  P   +A         +  +   A   +  A  +DP +
Sbjct: 46  AVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 88

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 21/143 (14%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G L   +  Y  A+    +A ++          +  Q        +    A         
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVEL--------RPDDAQL-------WNKLGATLANGNRPQ 223

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186
           E      + L++ P  V+ +Y  + ++   S+ + A   + RA+ +              
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTT------PT 277

Query: 187 KDKQREYAKYQAEIFGTMLSKMG 209
            +  RE  +   + F  +L+ M 
Sbjct: 278 GEASREATRSMWDFFRMLLNVMN 300

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 15/109 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G  + +      A+  +E   +         + E+ +A       + +    + + E   
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQK--------EPEREEA-------WRSLGLTQAENEKDG 68

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175
                      L+P ++      + +H        A A ++  L   P 
Sbjct: 69  LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 4/92 (4%)

Query: 113 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172
           +      LKL + +E +     V + EP   +A         +  +   A   +  A  +
Sbjct: 21  MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML 80

Query: 173 DPNNRVVKL----VYMELKDKQREYAKYQAEI 200
           DP +  V       +    +     A  +A +
Sbjct: 81  DPKDIAVHAALAVSHTNEHNANAALASLRAWL 112

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 17/112 (15%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G L + AG Y  +   +EKA ++        D E+ +        +L        LE Y 
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQL--------DPEESKY-------WLMKGKALYNLERYE 57

Query: 127 ETSSLCTKVLELEP--LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E       V+ +     N      ++ A       E      +    ++ ++
Sbjct: 58  EAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 15/110 (13%), Positives = 31/110 (28%), Gaps = 13/110 (11%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G  L+   +Y  A ++  +A++           E+ +        + N     L+++  +
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRV-------FENLGLVSLQMKKPA 158

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           +      K L L           +    K  E   A             N
Sbjct: 159 QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 15/111 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G +  +  K  +A + +EK+ ++        +  +           L  A    K  +Y 
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRL--------NRNQPSV-------ALEMADLLYKEREYV 192

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177
                     +    N ++L    +      + + A +   +   + P + 
Sbjct: 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 15/109 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G    + G         E A           D    +A       +      + + E+  
Sbjct: 72  GLKRLKEGDLPVTILFMEAAILQ--------DPGDAEA-------WQFLGITQAENENEQ 116

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175
                  + LEL+P N+KAL   + ++  TS  + A   +K  +  +P 
Sbjct: 117 AAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 12/65 (18%), Positives = 22/65 (33%)

Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
                  +LK  D   T       +  +P + +A         +    + A   ++R L 
Sbjct: 68  AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127

Query: 172 IDPNN 176
           + PNN
Sbjct: 128 LQPNN 132

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 15/111 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G L   +G++ RA   +  A  +          E +         +    A     +   
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTV--------RPEDYSL-------WNRLGATLANGDRSE 264

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177
           E     T+ LE++P  +++ Y    + +      +A ++   AL++   +R
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 13/98 (13%), Positives = 32/98 (32%)

Query: 79  ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 138
            + ++E+A   +E    F D  + +   +    +++           S +        E 
Sbjct: 1   GAMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60

Query: 139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
              +    +      LK  +L      ++ A+  DP +
Sbjct: 61  PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD 98

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 11/110 (10%), Positives = 25/110 (22%), Gaps = 3/110 (2%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                   +  ++         + E    + +      + +                +++
Sbjct: 174 KGSPGLTRRMSKSPVDSSVLEGVKE---LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
                    L + P +     R           E+A     RAL I P  
Sbjct: 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF 280

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 15/109 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
               +++G Y  A   ++    +               +      +L   AC+  +  Y 
Sbjct: 28  AFNQYQSGXYEDAHXVFQALCVL---------------DHYDSRFFLGLGACRQAMGQYD 72

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175
                 +    ++    +  +  ++  L+  EL +AE+ +  A  +  N
Sbjct: 73  LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G    + G    A   +E A +         D +  +A       +      + + E   
Sbjct: 71  GLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEA-------WQYLGTTQAENEQEL 115

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
              S   + LEL+P N  AL   + +    S   +A   ++  L   P  
Sbjct: 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 74  GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLR-------LSCYLNNAACKLKLEDYS 126
            +    +K+  +A   +  +   T     +                      +L+  D  
Sbjct: 22  AELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               L    ++ +P +++A         +  +   A + ++R L + P+N
Sbjct: 82  NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 131

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 2/112 (1%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                      +A +      +    +       +  A G  L          L    + 
Sbjct: 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 198

Query: 127 ETSSLCTKVLELEPLNVKA--LYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E   L    + L+P ++              + E +KA      AL++ PN+
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 1   MTMKKEEQATVTISAEY---LCSHEVSELVSADSVLHYEVTLIDFTKE---KPFWKMDTH 54
            +MK  E+A V +  E       +     V   + L YEV +I F +    K    M   
Sbjct: 114 ASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVE 173

Query: 55  EKIEACE 61
           E+I A +
Sbjct: 174 ERIGAAD 180

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 19/136 (13%), Positives = 37/136 (27%), Gaps = 21/136 (15%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G L    G    A   + +A   +       +             +        +  ++ 
Sbjct: 50  GVLYDSLGLRALARNDFSQA---LAIRPDMPE------------VFNYLGIYLTQAGNFD 94

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN------NRVVK 180
                   VLEL+P    A   R  A       + A+ D+      DPN         + 
Sbjct: 95  AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 154

Query: 181 LVYMELKDKQREYAKY 196
              ++ K  +    ++
Sbjct: 155 EQKLDEKQAKEVLKQH 170

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 21/156 (13%), Positives = 38/156 (24%), Gaps = 25/156 (16%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKI----IEFHHSFTDDEKHQANGLRLSCYL--------- 113
           G  L+  G+   A        +               E+                     
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177

Query: 114 ----NNAACKL----KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEAD 165
               N     L    +        +  T    L     +  +   + +L   +L+ A A 
Sbjct: 178 QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237

Query: 166 IKRALTIDPNNRVV----KLVYMELKDKQREYAKYQ 197
            K A+  + +N V      L    L   Q + A+  
Sbjct: 238 FKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 11/110 (10%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
              L    +      + E+           TDDE+ Q                  L   +
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRAL----TDDERAQL-------LYERGVLYDSLGLRA 60

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
              +  ++ L + P   +          +    + A       L +DP  
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 110

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 44.8 bits (107), Expect = 4e-06
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           GN+      Y  A   +EKA +           E           +       +KLE   
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRA--------GMENGDL-------FYMLGTVLVKLEQPK 142

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
                  + +EL   + +A ++          L++A +        DP +
Sbjct: 143 LALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 44.4 bits (106), Expect = 6e-06
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
            NLL    +  RA   Y+KA ++        D     A       Y       +  E Y 
Sbjct: 64  ANLLSSVNELERALAFYDKALEL--------DSSAATA-------YYGAGNVYVVKEMYK 108

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E   +  K L     N    Y      +K  + + A   ++RA+ ++ N+
Sbjct: 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 44.4 bits (106), Expect = 7e-06
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G +L +  +   A    ++A   +E + + T+                   C        
Sbjct: 132 GTVLVKLEQPKLALPYLQRA---VELNENDTE------------ARFQFGMCLANEGMLD 176

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E  S    V E +P +  A Y     +      EKA   + +A+ I P++
Sbjct: 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.3 bits (98), Expect = 7e-05
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
                  G Y +A++ + KA +         + E           Y+N A     + +  
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIP-------YINFANLLSSVNELE 74

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
              +   K LEL+     A Y     ++     ++A+   ++AL     N
Sbjct: 75  RALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN 124

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 1   MTMKKEEQATVTISAEY---LCSHEVSELVSADSVLHYEVTLIDFTKE 45
           + MKK E A VTI  EY       +   +V  +S + YEV L+ F K+
Sbjct: 309 LNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKD 356

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 1   MTMKKEEQATVTISAEY------LCSHEVSELVSADSVLHYEVTLIDFTKEKPFWKMDTH 54
            TMKK E+  + +  +Y        +      V  ++ L  ++ L+ +            
Sbjct: 187 KTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKI 246

Query: 55  EKIEACERKKHD 66
            K    E + ++
Sbjct: 247 LKKVLKEXEGYE 258

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 16/137 (11%), Positives = 41/137 (29%), Gaps = 4/137 (2%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKI----IEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL 122
                R  +  +A +  +KA +        H       + +   +           +  L
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313

Query: 123 EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLV 182
           E      +   K  E      +     +  H    + E+AE   ++  + +      +L+
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373

Query: 183 YMELKDKQREYAKYQAE 199
           ++   + Q    K + +
Sbjct: 374 HLRYGNFQLYQMKCEDK 390

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 12/136 (8%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
             + +  G+        +K   + E   S      ++     L C       K       
Sbjct: 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSS-----PYRIESPELDCEEGWTRLKCGGNQNE 155

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADI---KRALTIDPNNRVVK--- 180
                  K LE +P N +     + A  +      ++  I   ++A+ ++P+N+ +K   
Sbjct: 156 RAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL 215

Query: 181 -LVYMELKDKQREYAK 195
            L   +++++  E  +
Sbjct: 216 ALKLHKMREEGEEEGE 231

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 8/110 (7%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
               +R   +  +    +   + I  +      +   A  L           + + E+  
Sbjct: 179 AIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL--------HKMREEGEEEG 230

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E   L  + LE  P     L   ++ + +  E +KA   +K+AL   PNN
Sbjct: 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN 280

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 19/130 (14%), Positives = 41/130 (31%), Gaps = 18/130 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G L      +  A   +     + + H                    N       L++ +
Sbjct: 13  GVLAADKKDWKGALDAFSA---VQDPHSRI---------------CFNIGCMYTILKNMT 54

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186
           E     T+ +  +     A ++R   + +T + + A  D+K AL     N+++    + L
Sbjct: 55  EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114

Query: 187 KDKQREYAKY 196
           + K       
Sbjct: 115 QFKLFACEVL 124

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 18/127 (14%), Positives = 31/127 (24%), Gaps = 31/127 (24%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G +         A K + ++   I                     Y        + E Y 
Sbjct: 44  GCMYTILKNMTEAEKAFTRS---INRDKHLAV------------AYFQRGMLYYQTEKYD 88

Query: 127 ETSSLCTKVLELEPLNV----------------KALYRRSQAHLKTSELEKAEADIKRAL 170
                  + L     N                 + LY  +  + K  E +KAE  +  A 
Sbjct: 89  LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148

Query: 171 TIDPNNR 177
           ++    R
Sbjct: 149 SMKSEPR 155

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           GN  ++ G Y  A + Y+KA   +E   +  +             + N      K  DY 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKA---LELDPNNAE------------AWYNLGNAYYKQGDYD 60

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E      K LEL+P N +A Y    A+ K  + ++A    ++AL +DPNN
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
            ++L + GK   A   Y++A +I               +      Y N      +++D  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRI---------------SPTFADAYSNMGNTLKEMQDVQ 94

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
                 T+ +++ P    A    +  H  +  + +A A  + AL + P+ 
Sbjct: 95  GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
            N+    G    A + Y KA ++     +                + N A+   +     
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAA---------------AHSNLASVLQQQGKLQ 60

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E      + + + P    A         +  +++ A     RA+ I+P  
Sbjct: 61  EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.8 bits (97), Expect = 4e-05
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           GN  ++ G Y  A + Y+KA   +E      +             + N      K  DY 
Sbjct: 8   GNAYYKQGDYDEAIEYYQKA---LELDPRSAE------------AWYNLGNAYYKQGDYD 52

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E      K LEL+P + +A Y    A+ K  + ++A    ++AL +DP +
Sbjct: 53  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.8 bits (97), Expect = 5e-05
 Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           GN  ++ G Y  A + Y+KA   +E      +             + N      K  DY 
Sbjct: 42  GNAYYKQGDYDEAIEYYQKA---LELDPRSAE------------AWYNLGNAYYKQGDYD 86

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E      K LEL+P + +A Y    A+ K  + ++A    ++AL +DP +
Sbjct: 87  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.7 bits (99), Expect = 4e-05
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G    +AG+Y +A    E+            D              L+     +K     
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDA--------DAFDVDV-------ALHLGIAYVKTGAVD 59

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
             + L  + L   P NVK        +++  + + A   + +    +P N
Sbjct: 60  RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.3 bits (98), Expect = 5e-05
 Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G    + G   R ++  E++   +                             ++++ Y 
Sbjct: 49  GIAYVKTGAVDRGTELLERS---LADAPDNVK------------VATVLGLTYVQVQKYD 93

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               L  KV E  P+N    +R   A       ++A    K AL + PN 
Sbjct: 94  LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 14/65 (21%), Positives = 29/65 (44%)

Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 171
           Y +      K   YS+   L  +V + +  +V        A++KT  +++    ++R+L 
Sbjct: 11  YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70

Query: 172 IDPNN 176
             P+N
Sbjct: 71  DAPDN 75

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 38.2 bits (90), Expect = 6e-04
 Identities = 17/110 (15%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G    +  KY  A     K A+         +                       L  + 
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEA--------NPINFNV-------RFRLGVALDNLGRFD 127

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           E        L L P   K     + ++ +    E+A    K+A  +D   
Sbjct: 128 EAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 41.3 bits (96), Expect = 8e-05
 Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 13/110 (11%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
             +L +  +   A K+ +K             DE      L  +            E   
Sbjct: 137 VQILLKLDRLDLARKELKKMQDQ---------DEDATLTQLATAWVS----LAAGGEKLQ 183

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
           +   +  ++ +     +  L  ++  H+     E AE  ++ AL  D  +
Sbjct: 184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 14/111 (12%)

Query: 67  GNLLF-RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY 125
           G  L  R  +   +   ++KA          T    + A        LN   C  K   +
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALADP------TYPTPYIA-------NLNKGICSAKQGQF 129

Query: 126 SETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
               +   + L  +P    A    ++  +   +L  A+   K+  +     
Sbjct: 130 GLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 15/136 (11%), Positives = 45/136 (33%), Gaps = 17/136 (12%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G        Y  +   Y +A ++          E  +      +        +      +
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQL--------RGENAEL----YAALATVLYYQASQHMTA 98

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN----RVVKLV 182
           +T ++  K L L+   + AL   +      +   +A    ++ + ++       ++V+ +
Sbjct: 99  QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158

Query: 183 YM-ELKDKQREYAKYQ 197
            M +L  ++ +   + 
Sbjct: 159 NMAKLLQRRSDLEHHH 174

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNV-KALYRRSQAHLKTSELEKAEADIKRAL 170
            L      +   D         + L+ EP+   +A Y    A+ K  + +KA  + + A+
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 171 TIDPNNRVVKLVYMELKDKQREYAK 195
            ++P++  ++   M + D    Y K
Sbjct: 63  ELNPDSPALQARKM-VMDILNFYNK 86

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 16/109 (14%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G +    G+  +A    ++A  +         ++  +            A   L +    
Sbjct: 125 GLVYALLGERDKAEASLKQALAL---------EDTPEI-------RSALAELYLSMGRLD 168

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175
           E  +   K LE  P ++    R + A L   + E+A            +
Sbjct: 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 37.4 bits (87), Expect = 5e-04
 Identities = 13/103 (12%), Positives = 30/103 (29%), Gaps = 12/103 (11%)

Query: 74  GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT 133
           G   +A   YEKA           +            CYL   +    L +Y +  ++  
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAE------------CYLGLGSTFRTLGEYRKAEAVLA 51

Query: 134 KVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 176
             ++  P +       +         E+    + + +    ++
Sbjct: 52  NGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.98
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.97
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.96
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.93
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.9
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.9
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.88
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.85
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.81
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.81
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.78
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.78
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.77
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.76
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.75
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.73
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.72
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.71
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.71
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.7
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.69
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.69
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.68
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.68
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.67
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.67
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.67
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.67
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.66
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.65
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.64
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.64
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.62
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.62
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.61
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.61
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.6
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.6
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.6
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.59
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.58
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.58
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.57
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.56
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.56
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.54
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.54
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.54
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.54
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.54
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.53
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.53
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.52
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.52
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.51
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.51
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.49
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.49
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.49
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.49
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.48
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.48
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.48
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.48
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.47
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.47
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.47
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.47
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.46
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.46
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.46
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.46
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.45
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.45
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.45
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.44
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.44
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.44
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.44
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.44
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.44
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.44
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.43
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.43
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.43
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.43
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.43
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.42
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.42
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.42
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.42
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.42
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.41
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.41
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.41
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.4
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.4
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.4
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.4
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.37
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.37
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.36
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.36
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.35
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.35
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.35
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.34
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.34
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.34
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.33
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.33
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.32
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.31
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.31
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.31
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.3
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.3
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.3
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.29
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.29
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.29
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.28
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.28
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.27
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.27
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.27
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.26
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.26
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.24
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.24
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.23
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.23
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.23
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.23
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.22
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.22
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.22
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.22
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.22
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.22
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.2
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.2
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.2
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.19
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.18
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.16
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.16
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.16
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.16
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.14
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.13
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.12
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.12
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.12
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.11
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.11
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.1
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.1
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.09
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.08
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.05
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.05
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.03
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.03
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.02
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.01
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.01
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.01
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.0
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.98
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.97
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.96
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.94
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.94
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.94
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.9
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.89
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.88
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.88
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.87
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.87
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.87
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.79
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.78
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.78
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.77
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.76
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.73
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.69
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.67
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.62
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.61
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	98.53
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.44
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.44
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.43
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.41
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.41
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.4
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.38
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.38
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.38
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.35
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.34
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.31
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.31
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	98.3
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.25
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	98.17
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.17
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	98.17
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	98.16
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.15
2ppn_A	107	FK506-binding protein 1A; high resolution protein	98.15
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	98.12
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	98.12
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	98.11
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	98.09
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.08
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	98.04
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.01
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	98.0
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.0
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.96
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.85
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	97.84
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	97.81
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.73
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.7
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	97.57
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.48
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.4
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.39
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.3
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.27
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.13
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	97.08
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.07
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.05
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.8
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.76
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	96.68
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.67
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.43
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.15
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	95.89
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.79
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.57
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.56
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.53
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.08
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.07
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.58
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	94.32
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	93.66
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.59
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	93.49
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	93.44
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	92.46
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	92.19
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.94
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.07
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	90.56
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	90.51
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	90.44
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	90.15
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	89.91
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	89.91
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	89.84
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	89.49
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	89.3
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	88.96
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	88.71
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.48
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	87.55
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	85.86
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	85.62
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	84.85
3eab_A	89	Spastin; spastin, MIT, ESCRT, alternative splicing	84.84
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	83.71
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	83.52
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	83.02
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	80.26

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.98  E-value=9.9e-30  Score=205.51  Aligned_cols=208  Identities=32%  Similarity=0.556  Sum_probs=197.8

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcC-CCCCCceEEEEEEEcccccCCCCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHH
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSE-LVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWR   78 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~-~ip~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~   78 (209)
                      ..|++||.+.++|.|.+ ||..|... .||+++.+.|.++|..+..+...+..........+..+...|+.++..|+|++
T Consensus        86 ~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~  165 (336)
T 1p5q_A           86 QRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQ  165 (336)
T ss_dssp             TTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             hcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence            36999999999999999 99999665 69999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCC
Q 028390           79 ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSE  158 (209)
Q Consensus        79 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~  158 (209)
                      |+..|.+|+.+.|.......+......+....+|.++|.|+..+|+|++|+..|+++++++|++..+++++|.+|..+|+
T Consensus       166 A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  245 (336)
T 1p5q_A          166 ALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND  245 (336)
T ss_dssp             HHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence            99999999999998877666777788888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028390          159 LEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM  208 (209)
Q Consensus       159 ~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  208 (209)
                      +++|+.+|+++++++|++..+...+..+...+++..++++..|++||+.+
T Consensus       246 ~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          246 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999865

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.97  E-value=2.2e-29  Score=211.26  Aligned_cols=208  Identities=32%  Similarity=0.554  Sum_probs=191.3

Q ss_pred             CCCCCccEEEEEeCccc-ccccCC-cCCCCCCceEEEEEEEcccccCCCCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHH
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEV-SELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWR   78 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~-~~~ip~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~   78 (209)
                      ..|++||.+.+.+.|.| |+..|. ...||+++.+.|.+++..+.++...+..........+..++..|+.+++.|+|.+
T Consensus       207 ~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~  286 (457)
T 1kt0_A          207 EKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQ  286 (457)
T ss_dssp             TTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            36999999999999999 999995 3479999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCC
Q 028390           79 ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSE  158 (209)
Q Consensus        79 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~  158 (209)
                      |+..|.+|+.+.|..+.+..+...........+|+|+|.||+++|+|++|+.+|++++.++|++.++++++|.+|..+|+
T Consensus       287 A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~  366 (457)
T 1kt0_A          287 AVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE  366 (457)
T ss_dssp             HHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC
Confidence            99999999999998877777777888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 028390          159 LEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM  208 (209)
Q Consensus       159 ~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  208 (209)
                      +++|+.+|+++++++|++..+...+..+...+++..++++..|++||+++
T Consensus       367 ~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~  416 (457)
T 1kt0_A          367 FESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKF  416 (457)
T ss_dssp             HHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999875

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.96  E-value=1.1e-28  Score=199.55  Aligned_cols=206  Identities=29%  Similarity=0.426  Sum_probs=149.8

Q ss_pred             CCCCccEEEEEeCccc-ccccCC--cCCCCCCceEEEEEEEcccccCC---CCCCCCHHHHHHHHHHHHHHhHHHHHcCC
Q 028390            2 TMKKEEQATVTISAEY-LCSHEV--SELVSADSVLHYEVTLIDFTKEK---PFWKMDTHEKIEACERKKHDGNLLFRAGK   75 (209)
Q Consensus         2 ~m~~ge~~~~~~~~~~-~~~~~~--~~~ip~~~~l~~~~~l~~~~~~~---~~~~~~~~~~~~~a~~~~~~g~~~~~~~~   75 (209)
                      .|++||++.|+|.+++ ||..|.  .+.||+++.+.|.+.|..+....   ..+.++..++...+..++..|+.++..|+
T Consensus       115 ~m~~Ge~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~  194 (338)
T 2if4_A          115 SMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEK  194 (338)
T ss_dssp             HCCBTCEEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSC
T ss_pred             cCCCCCeEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            5999999999999999 999986  47899999999999999887543   46778999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHH
Q 028390           76 YWRASKKYEKAAKIIEFHHSF--TDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAH  153 (209)
Q Consensus        76 ~~~A~~~y~~al~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~  153 (209)
                      |++|+..|.+|+.+.|....+  ..........+...+|+++|.|++.+|+|++|+.+|++++.++|++.++++++|.+|
T Consensus       195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~  274 (338)
T 2if4_A          195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAK  274 (338)
T ss_dssp             CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999987764311  111122334445568999999999999999999999999999999999999999999


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 028390          154 LKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSK  207 (209)
Q Consensus       154 ~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  207 (209)
                      ..+|++++|+.+|+++++++|+++.+...+..+........++.+..|++||+.
T Consensus       275 ~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          275 AELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             HTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999888888888889999999875

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.93  E-value=2.7e-25  Score=160.85  Aligned_cols=154  Identities=25%  Similarity=0.349  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHH
Q 028390           53 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH---SFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS  129 (209)
Q Consensus        53 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~  129 (209)
                      .+++...+..++..|+.+++.|+|+.|+..|.+++.+.+...   ....+++....+....+|.++|.||+.+|+|++|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            346677899999999999999999999999999999866432   22335566677888999999999999999999999


Q ss_pred             HHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390          130 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR-VVKLVYMELKDKQREYAKYQAEIFGTMLS  206 (209)
Q Consensus       130 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  206 (209)
                      .+|++++.++|.++++++++|.+|..+|++++|+.+|+++++++|+++ .+...+..+...+++..++++..|++||+
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  161 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ  161 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999998 88999999999999999999999999996

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.90  E-value=3.1e-22  Score=149.28  Aligned_cols=175  Identities=27%  Similarity=0.377  Sum_probs=139.9

Q ss_pred             EEEEEEEcccccCCCCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChH-HHHHHHHHHHHH
Q 028390           33 LHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD-EKHQANGLRLSC  111 (209)
Q Consensus        33 l~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~-~~~~~~~~~~~~  111 (209)
                      ......+..+.++.+.|.++..+....+..+...|..++..|+|++|+..|.+++.+.|..+..... .......+...+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~   90 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC   90 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence            3444567788889999999999999999999999999999999999999999999998876644322 223334455688


Q ss_pred             HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      +.++|.|+..+|+|++|+..+.+++.++|++..+++++|.+|..+|++++|+..|+++++++|+++.+...+..+...++
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  170 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhc
Q 028390          192 EYAKYQAEIFGTMLSK  207 (209)
Q Consensus       192 ~~~~~~~~~~~~~~~~  207 (209)
                      +..+.++..|++||+.
T Consensus       171 ~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          171 EARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHC------------
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999999974

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.90  E-value=1.8e-22  Score=140.65  Aligned_cols=115  Identities=26%  Similarity=0.381  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      +..+..+++.|+.+++.|+|++|+..|++++.+.|..+               .+|.++|.|+..+|++++|+..+++++
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~al   74 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA---------------ILYSNRAACLTKLMEFQRALDDCDTCI   74 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence            35688899999999999999999999999999977653               479999999999999999999999999


Q ss_pred             hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      +++|+++.+++++|.++..+|++++|+.+|+++++++|+++.+...+..|
T Consensus        75 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           75 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999888776

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.88  E-value=5.9e-22  Score=142.24  Aligned_cols=138  Identities=14%  Similarity=0.093  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      ....+..++..|+.++..|+|++|+..|++||++.|+.+...   .....+....+|+|+|.++.++|+|++|+..|+++
T Consensus         7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA   83 (159)
T 2hr2_A            7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   83 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            355788899999999999999999999999999999854311   01112334559999999999999999999999999


Q ss_pred             hhh-------CCCchHHH----HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          136 LEL-------EPLNVKAL----YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       136 l~~-------~p~~~~~~----~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      |++       +|++.++|    +++|.++..+|++++|+.+|+++++++|++..+...+..+++.++....+
T Consensus        84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k  155 (159)
T 2hr2_A           84 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ  155 (159)
T ss_dssp             HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred             HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            999       99999999    99999999999999999999999999999999999999998888776543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.85  E-value=4e-20  Score=151.14  Aligned_cols=155  Identities=30%  Similarity=0.501  Sum_probs=134.9

Q ss_pred             CHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHH
Q 028390           52 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS-FTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS  130 (209)
Q Consensus        52 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  130 (209)
                      +.+.....+..++..|+.++..|+|++|+..|.+|+.+.+..+. ...+......+....+|.++|.|++.+|+|++|+.
T Consensus       215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  294 (370)
T 1ihg_A          215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD  294 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            46778888999999999999999999999999999997665320 11122233556778899999999999999999999


Q ss_pred             HHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390          131 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  206 (209)
Q Consensus       131 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  206 (209)
                      +|+++++++|++.++++++|.+|..+|++++|+.+|+++++++|++..+...+..+...+++..++++..|++||+
T Consensus       295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~  370 (370)
T 1ihg_A          295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA  370 (370)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999985

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.81  E-value=3.8e-19  Score=122.88  Aligned_cols=117  Identities=25%  Similarity=0.350  Sum_probs=109.3

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...|..++..|+|++|+..|.+++.+.|..+               .++.++|.++..+|++++|+..+.+++.+
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---------------RGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            467889999999999999999999999999977643               47999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHH
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTID------PNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~------p~~~~~~~~l~~l~~~~  190 (209)
                      +|+++.+++++|.++..+|++++|+..|+++++++      |+++.+...+..+...+
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999      99999999988887653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.81  E-value=2.7e-19  Score=124.51  Aligned_cols=114  Identities=24%  Similarity=0.305  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ...+..+++.|+.+++.|+|++|+.+|.+||.+.|..               ..+|.++|.||+.+|+|++|+.++.+++
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---------------~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---------------ITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            4567889999999999999999999999999997764               3479999999999999999999999999


Q ss_pred             hhCCCc-------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          137 ELEPLN-------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       137 ~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      +++|.+       ..+++++|.++..+|++++|+.+|++++...|+ ++....+..+
T Consensus        70 ~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           70 EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             HhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence            998876       358999999999999999999999999999885 6665555544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.78  E-value=3.6e-18  Score=123.41  Aligned_cols=123  Identities=18%  Similarity=0.167  Sum_probs=112.0

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+..+...|..++..|+|++|+..|.+++.+.|..               ..++.++|.++..+|+|++|+..+.+++.
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~   73 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---------------PIYLSNRAAAYSASGQHEKAAEDAELATV   73 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            457788999999999999999999999999997764               34799999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV--VKLVYMELKDKQREYAK  195 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~--~~~~l~~l~~~~~~~~~  195 (209)
                      ++|++..+++++|.+|..+|++++|+.+|+++++++|++..  ....+..++.++++...
T Consensus        74 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~  133 (164)
T 3sz7_A           74 VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR  133 (164)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999876  67777777777766544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.78  E-value=4.6e-18  Score=121.96  Aligned_cols=106  Identities=10%  Similarity=0.093  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ...+..+...|..++..|+|++|+..|.+++.+.|.++               .+|.++|.|+..+|+|++|+..|.+++
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~---------------~~~~~lg~~~~~~g~~~~Ai~~~~~al   97 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV---------------DYIMGLAAIYQIKEQFQQAADLYAVAF   97 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            44567789999999999999999999999999977654               479999999999999999999999999


Q ss_pred             hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390          137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  177 (209)
Q Consensus       137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~  177 (209)
                      .++|+++.+++++|.||..+|++++|+..|++++++.|+++
T Consensus        98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999999999865

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.77  E-value=8.2e-18  Score=118.87  Aligned_cols=124  Identities=15%  Similarity=0.184  Sum_probs=111.7

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+..+...|..++..|+|++|+..|.+++...|.++               .+|.++|.++..+|++++|+..+.+++.
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~   80 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA---------------RYFLGLGACRQSLGLYEQALQSYSYGAL   80 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3456778999999999999999999999999877653               4799999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      ++|+++.+++.+|.+|..+|++++|+..|+++++++|+++........+...++...++
T Consensus        81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~~  139 (142)
T 2xcb_A           81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTAR  139 (142)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999988877777777777665543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.77  E-value=7.9e-18  Score=120.16  Aligned_cols=123  Identities=12%  Similarity=0.138  Sum_probs=108.5

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+..+...|..++..|+|++|+..|.+++...|.++               .++.++|.++..+|+|++|+..|.+++.
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS---------------RFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3466788999999999999999999999999877654               4789999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      ++|+++.+++++|.+|..+|++++|+..|+++++++|+++........+...++....
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~  141 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL  141 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988776666666665555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.76  E-value=7.2e-18  Score=120.54  Aligned_cols=116  Identities=15%  Similarity=0.064  Sum_probs=103.7

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      .....+...|..++..|+|++|+..|.+++.+.|.++               .+|.++|.++..+|++++|+..+.++++
T Consensus        29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~~~~~~A~~~~~~al~   93 (150)
T 4ga2_A           29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP---------------KAHRFLGLLYELEENTDKAVECYRRSVE   93 (150)
T ss_dssp             HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            3455677899999999999999999999999977654               4799999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEAD-IKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~-~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      ++|+++.+++++|.+|..+|++++|... ++++++++|+++.+......+..
T Consensus        94 ~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A           94 LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            9999999999999999999999876655 69999999999999887777654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.75  E-value=1.9e-17  Score=115.34  Aligned_cols=121  Identities=26%  Similarity=0.344  Sum_probs=110.6

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..++..|+|+.|+..|.+++...|..               ..++.++|.++..+|++++|+..+.+++.++
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   73 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALELD   73 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            5678899999999999999999999999987664               3479999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN-----NRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~-----~~~~~~~l~~l~~~~~~~~~  195 (209)
                      |+++.+++.+|.++..+|++++|+..|++++.++|+     +..+...+..+........+
T Consensus        74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e  134 (137)
T 3q49_B           74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE  134 (137)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998     78888888888776655443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.73  E-value=2e-16  Score=118.82  Aligned_cols=132  Identities=11%  Similarity=0.064  Sum_probs=107.2

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChH-HHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD-EKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      +..+...|..++..|++++|+..|.+++...|..+..... ...........+..++|.++..+|++++|+..+.+++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            5567889999999999999999999999998764321000 000000011112233999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..+..+.-...
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999998875443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.72  E-value=1.2e-17  Score=119.46  Aligned_cols=114  Identities=12%  Similarity=0.021  Sum_probs=102.2

Q ss_pred             HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHH
Q 028390           66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA  145 (209)
Q Consensus        66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  145 (209)
                      .|..+..+|++++|+..|.+++...|..+.               .++++|.+|+.+|+|++|+..+.++++++|+++.+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~---------------~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a   67 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSI---------------KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA   67 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHT---------------THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            577778889999999999999998776544               58999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390          146 LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  194 (209)
Q Consensus       146 ~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~  194 (209)
                      ++.+|.+|..+|++++|+..|+++++++|+++.+...+..+....++..
T Consensus        68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  116 (150)
T 4ga2_A           68 HRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD  116 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Confidence            9999999999999999999999999999999999999999887776543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.71  E-value=3.5e-16  Score=105.26  Aligned_cols=115  Identities=23%  Similarity=0.224  Sum_probs=106.5

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...|..++..|++++|+..|.+++...|.+               ..++.++|.++..+|++++|+..+.+++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            45678899999999999999999999999987654               347999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      +|.+..+++.+|.++..+|++++|...++++++++|+++.+...+..+..
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999888887754

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.71  E-value=1.4e-17  Score=139.49  Aligned_cols=203  Identities=16%  Similarity=0.122  Sum_probs=139.6

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEcccccCCCC---------------CCCCHH-HH-------
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTKEKPF---------------WKMDTH-EK-------   56 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~~~~~---------------~~~~~~-~~-------   56 (209)
                      ..|++||+..|+|.|++ ||..|.++.||+++++.|+|+|+.+......               +..... ..       
T Consensus        95 ~~m~~Ge~~~~~i~~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g  174 (457)
T 1kt0_A           95 ATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEG  174 (457)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEECEETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEE
T ss_pred             hhCCCCCEEEEEEChHHhccccCCCCCCCCCCcEEEEEeeceeecccccCCcceEEEEEecCCCCCCCCCCCEEEEEEEE
Confidence            37999999999999999 9999998999999999999999987542110               000000 00       


Q ss_pred             -H-----HH--HHHHHHHhHHHHHcCCHHHHHHHHHH----HHHHHhhcCC---------CC------------------
Q 028390           57 -I-----EA--CERKKHDGNLLFRAGKYWRASKKYEK----AAKIIEFHHS---------FT------------------   97 (209)
Q Consensus        57 -~-----~~--a~~~~~~g~~~~~~~~~~~A~~~y~~----al~~~~~~~~---------~~------------------   97 (209)
                       .     ..  ..-....|....--..++.|+..+++    +|.+.|...-         .+                  
T Consensus       175 ~~~g~~f~~~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~  254 (457)
T 1kt0_A          175 RCGGRMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAK  254 (457)
T ss_dssp             EETTEEEEEEEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred             EeCCeEEecCceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCc
Confidence             0     00  00000000000001134444444443    2322221000         00                  


Q ss_pred             --hHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---------------hHHHHHHHHHHhccCCHH
Q 028390           98 --DDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---------------VKALYRRSQAHLKTSELE  160 (209)
Q Consensus        98 --~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~  160 (209)
                        -+...........++.++|.++++.|+|++|+..|.+++.++|.+               ..+++++|.||..+|+++
T Consensus       255 ~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~  334 (457)
T 1kt0_A          255 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT  334 (457)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence              011123345567789999999999999999999999999999998               699999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          161 KAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       161 ~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      +|+.+|+++++++|++..++..+..+...+.++.+.. ..|.+.
T Consensus       335 ~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~-~~~~~a  377 (457)
T 1kt0_A          335 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK-GDFEKV  377 (457)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHH-HHHHHH
Confidence            9999999999999999999999999998887777653 345444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.70  E-value=2.9e-16  Score=138.16  Aligned_cols=124  Identities=13%  Similarity=0.106  Sum_probs=90.2

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+..+...|+.+...|++++|+..|.+|+++.|+.               ..+++++|.++..+|++++|+..|+++++
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~---------------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~   71 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF---------------AAAHSNLASVLQQQGKLQEALMHYKEAIR   71 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            446777888888888888888888888888876653               23567777777777777777777777777


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      ++|++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+...+++..+.
T Consensus        72 l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eA  130 (723)
T 4gyw_A           72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA  130 (723)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            77777777777777777777777777777777777777777777777776666665554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.69  E-value=1e-15  Score=104.67  Aligned_cols=122  Identities=27%  Similarity=0.293  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390           55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK  134 (209)
Q Consensus        55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  134 (209)
                      .....+..+...|..++..|+++.|+..|.+++...|..               ..++.++|.++...|++++|+..+.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~   71 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---------------AVYFCNRAAAYSKLGNYAGAVQDCER   71 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhhchHHHHHHHHH
Confidence            345667889999999999999999999999999986653               34799999999999999999999999


Q ss_pred             HhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          135 VLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       135 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      ++..+|.+..+++.+|.++..+|++++|+..++++++++|+++.+...+..+...++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999988888876654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.69  E-value=5.2e-15  Score=105.74  Aligned_cols=119  Identities=24%  Similarity=0.351  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHH
Q 028390           54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT  133 (209)
Q Consensus        54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  133 (209)
                      ......+..+...|..++..|+++.|+..|.+++...|..               ..++.++|.++..+|++++|+..+.
T Consensus         7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~   71 (166)
T 1a17_A            7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDAT   71 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4567788999999999999999999999999999986654               3479999999999999999999999


Q ss_pred             HHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          134 KVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       134 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      +++.++|.+..+++.+|.++..+|++++|+..|+++++++|.+..+...+..+.
T Consensus        72 ~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  125 (166)
T 1a17_A           72 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  125 (166)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998886666653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.68  E-value=2.4e-15  Score=103.45  Aligned_cols=116  Identities=9%  Similarity=0.077  Sum_probs=104.6

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .+...|..++..|+|++|+..|.+++...|..+.            ...++.++|.++..+|++++|+..+.+++..+|+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~   71 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY------------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT   71 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            3568899999999999999999999998776542            2357899999999999999999999999999999


Q ss_pred             c---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          142 N---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       142 ~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      +   +.+++.+|.++..+|++++|+..|++++...|+++.+......+...
T Consensus        72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            9   88999999999999999999999999999999999888877776553

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.68  E-value=2.3e-16  Score=108.71  Aligned_cols=101  Identities=11%  Similarity=0.088  Sum_probs=89.4

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      +...|..++..|++++|+..|.+++...|...               .++.++|.++..+|++++|+..+.+++.++|++
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~   84 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPERE---------------EAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   84 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            46899999999999999999999999977653               479999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH
Q 028390          143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  178 (209)
Q Consensus       143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~  178 (209)
                      ..+++.+|.++..+|++++|+..|+++++++|++..
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           85 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999999999999999999998754

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.67  E-value=1.8e-15  Score=114.38  Aligned_cols=128  Identities=16%  Similarity=0.151  Sum_probs=109.2

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHh-hcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIE-FHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ..+...|..++..|+|++|+..|.+++.+.| .+               ..++.++|.++..+|++++|+..+.+++..+
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD---------------SVTAYNCGVCADNIKKYKEAADYFDIAIKKN   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC---------------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence            5678999999999999999999999999876 32               2467889999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV-------VKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~-------~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      |.+..+++.+|.+|..+|++++|+..|+++++++|+++.       +...+..+....++..+... .|.+.
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~a  143 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE-NYKHA  143 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH-HHHHH
Confidence            999999999999999999999999999999999999994       46666666655555554422 44443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.67  E-value=1.4e-15  Score=104.20  Aligned_cols=120  Identities=22%  Similarity=0.253  Sum_probs=108.0

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...|..++..|+++.|+..|.+++...|..               ..++.++|.++...|++++|+..+.+++..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   67 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------MTYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            46778899999999999999999999999986553               347899999999999999999999999999


Q ss_pred             CCCc-------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390          139 EPLN-------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  194 (209)
Q Consensus       139 ~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~  194 (209)
                      .|.+       ..+++.+|.++..+|++++|...|++++++.| ++.....+..+...+++.+
T Consensus        68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~  129 (131)
T 1elr_A           68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE  129 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence            8877       89999999999999999999999999999999 6888888888887776543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.67  E-value=5.9e-16  Score=116.97  Aligned_cols=118  Identities=15%  Similarity=0.088  Sum_probs=63.0

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh-----------cCHHHHHHH
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-----------EDYSETSSL  131 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~A~~~  131 (209)
                      +...|..+...|++++|+..|.+++.+.|..               ..++.++|.++..+           |++++|+..
T Consensus        42 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~  106 (217)
T 2pl2_A           42 LYWLARTQLKLGLVNPALENGKTLVARTPRY---------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV  106 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH
Confidence            4444444444444444444444444443332               22455555555555           555555555


Q ss_pred             HHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          132 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       132 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      +.++++++|++..+++.+|.++..+|++++|+..|+++++++ +++.+...+..+....++..+.
T Consensus       107 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A  170 (217)
T 2pl2_A          107 LKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEA  170 (217)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHH
Confidence            555555555555555555555555555555555555555555 5555555555555555544443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.67  E-value=9.2e-16  Score=105.59  Aligned_cols=116  Identities=27%  Similarity=0.317  Sum_probs=106.8

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      ....+...|..++..|++++|+..|.+++...|..               ..++.++|.++...|++++|+..+.+++..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------------AKLYSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            36678899999999999999999999999986653               347999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      +|.+..+++.+|.++..+|++++|+..|+++++++|.+..+...+..+...
T Consensus        80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988888887654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=1.5e-15  Score=106.62  Aligned_cols=117  Identities=34%  Similarity=0.505  Sum_probs=106.4

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..++..|+|++|+..|.+++...|..            .....++.++|.++..+|++++|+..+.+++.++
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   95 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATP------------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD   95 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            5667899999999999999999999999976542            2235689999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      |.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+..
T Consensus        96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999888877753

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.65  E-value=1.1e-15  Score=134.43  Aligned_cols=122  Identities=16%  Similarity=0.210  Sum_probs=113.2

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..+...|++++|+..|.+|+++.|+.               ..+|+++|.++..+|++++|+..|+++++++
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~---------------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~  107 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF---------------ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN  107 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            5678899999999999999999999999997764               3589999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      |++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+...+.+..+.
T Consensus       108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A          108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            999999999999999999999999999999999999999999999998877655443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.64  E-value=5.8e-15  Score=111.51  Aligned_cols=91  Identities=15%  Similarity=0.092  Sum_probs=79.7

Q ss_pred             HHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 028390          105 NGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  184 (209)
Q Consensus       105 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  184 (209)
                      .+....++.++|.++..+|++++|+..+.++++++ +++.+++.+|.++..+|++++|+..|+++++++|+++.+...+.
T Consensus       114 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la  192 (217)
T 2pl2_A          114 NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYA  192 (217)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            44556789999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 028390          185 ELKDKQREYAKY  196 (209)
Q Consensus       185 ~l~~~~~~~~~~  196 (209)
                      .+....++..+.
T Consensus       193 ~~~~~~g~~~~A  204 (217)
T 2pl2_A          193 SALLLKGKAEEA  204 (217)
T ss_dssp             HHHTC-------
T ss_pred             HHHHHccCHHHH
Confidence            998877776654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.64  E-value=6.2e-15  Score=107.76  Aligned_cols=146  Identities=12%  Similarity=0.069  Sum_probs=112.8

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC------------hHH-------HHHHHHHHHHHHhHHHHHH
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------DDE-------KHQANGLRLSCYLNNAACK  119 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~------------~~~-------~~~~~~~~~~~~~~~a~~~  119 (209)
                      .+..+...|..++..|+|++|+..|.+++++.|.++...            .++       .....+....++.++|.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            356678899999999999999999999999877643211            000       0111122344667777777


Q ss_pred             HhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028390          120 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAE  199 (209)
Q Consensus       120 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~  199 (209)
                      ...++++.|+..+.+++.++|.+..+++.+|.++..+|++++|+..|+++++++|+++.+...+..+...+++..+... 
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~-  162 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK-  162 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH-
Confidence            7788888888888888888888999999999999999999999999999999999999999999999988888776643 


Q ss_pred             HHHhhh
Q 028390          200 IFGTML  205 (209)
Q Consensus       200 ~~~~~~  205 (209)
                      .|.+.+
T Consensus       163 ~~~~al  168 (184)
T 3vtx_A          163 YFKKAL  168 (184)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.62  E-value=2.8e-15  Score=122.90  Aligned_cols=120  Identities=14%  Similarity=-0.002  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcC-HHHHHHHHHHHh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED-YSETSSLCTKVL  136 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al  136 (209)
                      ..+..+...|..+...|++++|+..|.++|.+.|...               .+|+++|.++..+|+ +++|+..+++++
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~---------------~a~~~~g~~l~~~g~d~~eAl~~~~~al  159 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY---------------TVWHFRRVLLKSLQKDLHEEMNYITAII  159 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH---------------HHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence            3455566677777777777777777777777765532               245555555555554 555555555555


Q ss_pred             hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      .++|++..+|+++|.++..+|++++|+..|+++++++|++..++..+..+...++.
T Consensus       160 ~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~  215 (382)
T 2h6f_A          160 EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL  215 (382)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC
Confidence            55555555555555555555555555555555555555555555555555544443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.62  E-value=3.1e-14  Score=96.38  Aligned_cols=115  Identities=30%  Similarity=0.374  Sum_probs=105.4

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..++..|+++.|+..|.+++...|..               ..++.++|.++...|++++|+..+.+++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            5667889999999999999999999999986543               3478999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      |.+..+++.+|.++...|++++|...+++++.++|+++.+...+..+...
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999998888877653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.61  E-value=7.3e-15  Score=120.41  Aligned_cols=115  Identities=12%  Similarity=-0.023  Sum_probs=108.0

Q ss_pred             HHHHHHHhHHHHHcCC-HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           60 CERKKHDGNLLFRAGK-YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~-~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      +..+..+|..+...|+ +++|+..|.+++.+.|...               .+|+++|.++..+|++++|+..|++++.+
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~---------------~a~~~~g~~~~~~g~~~eAl~~~~kal~l  195 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY---------------QVWHHRRVLVEWLRDPSQELEFIADILNQ  195 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            5568899999999997 9999999999999977653               48999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      +|++..+|+++|.++..+|++++|+.+|+++++++|++..++..+..+...
T Consensus       196 dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          196 DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998877

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.61  E-value=3.1e-15  Score=107.04  Aligned_cols=105  Identities=13%  Similarity=0.110  Sum_probs=93.5

Q ss_pred             HcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCH----------HHHHHHHHHHhhhCCC
Q 028390           72 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY----------SETSSLCTKVLELEPL  141 (209)
Q Consensus        72 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~  141 (209)
                      +.+.|++|+..|.+++.+.|.+.               .+|+++|.++..++++          ++|+..|+++|+++|+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~a---------------ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~   78 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDA---------------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   78 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence            44678999999999999987754               4799999999999876          5999999999999999


Q ss_pred             chHHHHHHHHHHhccC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          142 NVKALYRRSQAHLKTS-----------ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      +..+|+++|.+|..+|           ++++|+.+|++|++++|++....+.+..+.+.-+
T Consensus        79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~e  139 (158)
T 1zu2_A           79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ  139 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred             cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHh
Confidence            9999999999999985           8999999999999999999988888877665443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.60  E-value=1.7e-15  Score=103.29  Aligned_cols=100  Identities=13%  Similarity=0.100  Sum_probs=86.5

Q ss_pred             HcCCHHHHHHHHHHHHHH---HhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHH
Q 028390           72 RAGKYWRASKKYEKAAKI---IEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYR  148 (209)
Q Consensus        72 ~~~~~~~A~~~y~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  148 (209)
                      ..|++++|+..|.+++.+   .|.               ...++.++|.++..+|+|++|+..+.++++++|+++.+++.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   66 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD---------------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF   66 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH
Confidence            358899999999999997   344               35689999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          149 RSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       149 ~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      +|.++..+|++++|+..+++++...|+++.+......+
T Consensus        67 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai  104 (117)
T 3k9i_A           67 YAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI  104 (117)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            99999999999999999999999999998876544443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.60  E-value=4.6e-14  Score=103.06  Aligned_cols=119  Identities=13%  Similarity=0.038  Sum_probs=94.0

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC------------hHH-------HHHHHHHHHHHHhHHHHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------DDE-------KHQANGLRLSCYLNNAACKL  120 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~------------~~~-------~~~~~~~~~~~~~~~a~~~~  120 (209)
                      +..+...|..++..|++++|+..+.+++...+......            .+.       .....+....++..+|.++.
T Consensus        39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~  118 (184)
T 3vtx_A           39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD  118 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            44566778888888888888888888777655432111            000       01122233567899999999


Q ss_pred             hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH
Q 028390          121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  178 (209)
Q Consensus       121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~  178 (209)
                      .+|++++|+..++++++++|.++.+++++|.+|..+|++++|+..|+++++++|+++.
T Consensus       119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            9999999999999999999999999999999999999999999999999999997643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.60  E-value=1.3e-14  Score=114.00  Aligned_cols=102  Identities=28%  Similarity=0.416  Sum_probs=95.9

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..++..|+|++|+..|.+++...|..               ..++.++|.++..+|++++|+..+.++++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~   68 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALELD   68 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            4577899999999999999999999999987654               3579999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  176 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~  176 (209)
                      |++..+++++|.+|..+|++++|+..|+++++++|++
T Consensus        69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999999876

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.59  E-value=3.1e-14  Score=106.74  Aligned_cols=107  Identities=15%  Similarity=0.097  Sum_probs=92.9

Q ss_pred             HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHH
Q 028390           66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA  145 (209)
Q Consensus        66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  145 (209)
                      .|..++..|++++|+..|.+++.+.|.+.               .++.++|.++..+|++++|+..|+++++++|+++.+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a  124 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNV---------------DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA  124 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence            99999999999999999999999977653               479999999999999999999999999999999988


Q ss_pred             HHHHHHHHhc-----------------------------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          146 LYRRSQAHLK-----------------------------------TSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       146 ~~~~a~~~~~-----------------------------------~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      ++.+|.+|+.                                   +|++++|+.+|+++++++|+ ..+...+.++..
T Consensus       125 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~~i~~  201 (208)
T 3urz_A          125 NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKILR  201 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence            8888877643                                   34688999999999999996 445556666643

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.58  E-value=7.2e-14  Score=101.57  Aligned_cols=115  Identities=12%  Similarity=0.124  Sum_probs=103.2

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHH-HHhhcCH--HHHHHHHHHHh
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC-KLKLEDY--SETSSLCTKVL  136 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al  136 (209)
                      +..+...|..++..|++++|+..|.+++.+.|..+               .++.++|.+ +...|++  ++|+..+.+++
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~l~~~~~~~~~~~A~~~~~~al  108 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA---------------ELYAALATVLYYQASQHMTAQTRAMIDKAL  108 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH---------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            45688999999999999999999999999987643               478999999 8899999  99999999999


Q ss_pred             hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      ..+|.+..+++.+|.++..+|++++|+..|+++++++|++......+..+...
T Consensus       109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~~  161 (177)
T 2e2e_A          109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMA  161 (177)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999987666655555443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.58  E-value=2.4e-14  Score=99.20  Aligned_cols=99  Identities=17%  Similarity=0.118  Sum_probs=90.1

Q ss_pred             HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028390          106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  185 (209)
Q Consensus       106 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  185 (209)
                      +..+..+.++|.++++.|+|++|+..|+++++++|.++.+++++|.+|..+|++++|+.+|+++++++|++..+...+..
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~   89 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA   89 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 028390          186 LKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~  205 (209)
                      +...++++.+... .|.+.+
T Consensus        90 ~~~~~~~~~~A~~-~~~~al  108 (126)
T 4gco_A           90 CLVAMREWSKAQR-AYEDAL  108 (126)
T ss_dssp             HHHHTTCHHHHHH-HHHHHH
T ss_pred             HHHHCCCHHHHHH-HHHHHH
Confidence            9999888876643 555543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.57  E-value=3.6e-14  Score=107.19  Aligned_cols=118  Identities=17%  Similarity=0.101  Sum_probs=107.4

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP  140 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  140 (209)
                      ..+...|..++..|++++|+..|.+++...|..               ..++.++|.++..+|++++|+..+.+++.++|
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  107 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP  107 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            455669999999999999999999999986653               45799999999999999999999999999999


Q ss_pred             Cch-------HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHH
Q 028390          141 LNV-------KALYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYMELKDKQREY  193 (209)
Q Consensus       141 ~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~l~~~~~~~  193 (209)
                      ++.       .+++.+|.++..+|++++|+..|+++++++|+  +..+...+..+.......
T Consensus       108 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          108 GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            998       67999999999999999999999999999999  899999999888766554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.56  E-value=6.2e-14  Score=104.52  Aligned_cols=128  Identities=16%  Similarity=0.118  Sum_probs=111.5

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+..+...|..++..|+|++|+..|.+++.     +.             ..++.++|.++..+|++++|+..+.+++.
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-----~~-------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   65 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD-----PH-------------SRICFNIGCMYTILKNMTEAEKAFTRSIN   65 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-----CC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-----CC-------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3456678999999999999999999999852     11             35899999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR----------------VVKLVYMELKDKQREYAKYQAEIF  201 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~----------------~~~~~l~~l~~~~~~~~~~~~~~~  201 (209)
                      ++|.+..+++++|.++..+|++++|+..|++++++.|.+.                .+...+..+...+++..+... .|
T Consensus        66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~  144 (213)
T 1hh8_A           66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE-QL  144 (213)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH-HH
T ss_pred             hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH-HH
Confidence            9999999999999999999999999999999999988877                888999998888777765533 44


Q ss_pred             Hhh
Q 028390          202 GTM  204 (209)
Q Consensus       202 ~~~  204 (209)
                      .+.
T Consensus       145 ~~a  147 (213)
T 1hh8_A          145 ALA  147 (213)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.56  E-value=1.6e-13  Score=109.11  Aligned_cols=122  Identities=24%  Similarity=0.276  Sum_probs=110.5

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .....|..++..|++++|+..|.+++...|.++           .....++..+|.++..+|++++|+..+.+++..+|+
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  304 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVA-----------EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD  304 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch-----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            345679999999999999999999999876643           234556889999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  194 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~  194 (209)
                      ++.+++.+|.++..+|++++|...|+++++++|+++.+...+..+...+++.+
T Consensus       305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  357 (359)
T 3ieg_A          305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ  357 (359)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999988877654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.54  E-value=3.8e-14  Score=94.34  Aligned_cols=100  Identities=20%  Similarity=0.181  Sum_probs=92.6

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC-
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL-  141 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-  141 (209)
                      +...|..++..|++++|+..|.+++...|..               ..++.++|.++..+|++++|+..+.+++..+|. 
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~   73 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---------------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE   73 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence            4578999999999999999999999986653               347899999999999999999999999999999 


Q ss_pred             -chHHHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCCCH
Q 028390          142 -NVKALYRRSQAHLKT-SELEKAEADIKRALTIDPNNR  177 (209)
Q Consensus       142 -~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~l~p~~~  177 (209)
                       +..+++.+|.++..+ |++++|+.++++++...|.++
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence             999999999999999 999999999999999999763

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.54  E-value=4.7e-13  Score=103.25  Aligned_cols=119  Identities=13%  Similarity=0.107  Sum_probs=103.0

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh--------hcCHHHHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK--------LEDYSETSSL  131 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--------~~~~~~A~~~  131 (209)
                      ...+...|..++..|+|++|+..|.+++...|..+.            ...+++++|.+++.        +|++++|+..
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~  119 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEA  119 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch------------hHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            456778888888888888898888888888776544            35679999999999        9999999999


Q ss_pred             HHHHhhhCCCchHHH-----------------HHHHHHHhccCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHH
Q 028390          132 CTKVLELEPLNVKAL-----------------YRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVYMELKDKQ  190 (209)
Q Consensus       132 ~~~al~~~p~~~~~~-----------------~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~~l~~~~  190 (209)
                      +.+++...|++..+.                 +.+|.+|..+|++++|+..|+++++..|++   +.+...+..+...+
T Consensus       120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            999999999986665                 899999999999999999999999999984   56777787777766

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.54  E-value=1.2e-14  Score=122.31  Aligned_cols=116  Identities=24%  Similarity=0.346  Sum_probs=106.3

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...|..++..|+|++|+..|.+|+.+.|..               ..++.++|.++..+|++++|+..+++++++
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   69 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDATRAIEL   69 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            45566788999999999999999999999986654               457999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      +|.+..+++++|.+|..+|++++|+..|+++++++|++..+...+..+...
T Consensus        70 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~  120 (477)
T 1wao_1           70 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI  120 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998888887443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.54  E-value=2.8e-13  Score=92.58  Aligned_cols=128  Identities=25%  Similarity=0.313  Sum_probs=111.5

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .+...|..++..|++++|+..|.+++...|..               ..++.++|.++...|++++|+..+.+++..+|.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   67 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR   67 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            46678999999999999999999999875543               346889999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                      +..+++.+|.++...|++++|+..+++++...|.+..+...+..+....++..+.. ..|.+++
T Consensus        68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~  130 (136)
T 2fo7_A           68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKAL  130 (136)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHH
T ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHH-HHHHHHH
Confidence            99999999999999999999999999999999999999988888887776665543 3455443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.54  E-value=1.6e-13  Score=105.94  Aligned_cols=112  Identities=16%  Similarity=0.169  Sum_probs=99.9

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..++..|+|++|+..|.+++...|..+.            ...+++.+|.+++.+|+|++|+..+.+++...
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW------------AADAQFYLARAYYQNKEYLLAASEYERFIQIY   82 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc------------hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence            567789999999999999999999999998776543            35689999999999999999999999999998


Q ss_pred             CCc---hHHHHHHHHHHhc--------cCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390          140 PLN---VKALYRRSQAHLK--------TSELEKAEADIKRALTIDPNNRVVKLVY  183 (209)
Q Consensus       140 p~~---~~~~~~~a~~~~~--------~~~~~~A~~~~~~a~~l~p~~~~~~~~l  183 (209)
                      |++   ..+++.+|.++..        +|++++|+..|+++++.+|+++.+...+
T Consensus        83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  137 (261)
T 3qky_A           83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT  137 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH
Confidence            854   6789999999999        9999999999999999999987666443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.3e-13  Score=104.91  Aligned_cols=113  Identities=26%  Similarity=0.349  Sum_probs=95.0

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...|..++..|++++|+..|.+++...|..               ..++.++|.++..+|++++|+..+.+++..
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  202 (258)
T 3uq3_A          138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------------ARGYSNRAAALAKLMSFPEAIADCNKAIEK  202 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            45567788888889999999999999998876653               246888899999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHH
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTID------PNNRVVKLVYMEL  186 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~------p~~~~~~~~l~~l  186 (209)
                      +|+++.+++.+|.++..+|++++|...|+++++++      |++..+...+..+
T Consensus       203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            99888899999999999999999999999999888      8888777776654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.53  E-value=1.2e-13  Score=118.31  Aligned_cols=130  Identities=10%  Similarity=0.037  Sum_probs=116.1

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...|..++..|++++|+..|.+++.+.|..               ..++.++|.++..+|++++|+..+++++++
T Consensus        22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   86 (568)
T 2vsy_A           22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---------------PEAVARLGRVRWTQQRHAEAAVLLQQASDA   86 (568)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            35678899999999999999999999999987654               347999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ---REYAKYQAEIFGTM  204 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~---~~~~~~~~~~~~~~  204 (209)
                      +|++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+...+   ++..+.. ..|.+.
T Consensus        87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~-~~~~~a  154 (568)
T 2vsy_A           87 APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS-AQVRAA  154 (568)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHH-HHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHH-HHHHHH
Confidence            9999999999999999999999999999999999999999999999998887   6665443 344443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.52  E-value=6.6e-13  Score=95.81  Aligned_cols=129  Identities=17%  Similarity=0.149  Sum_probs=112.2

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ...+...|..++..|++++|+..|.+++...|..               ..++.++|.++...|++++|+..+.+++..+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  106 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDN---------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN  106 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            4556788999999999999999999999986543               3478999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      |.+..+++.+|.++...|++++|+..+++++...|.++.+...+..+....++..+.. ..|.+.
T Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~  170 (186)
T 3as5_A          107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL-PHFKKA  170 (186)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHH
T ss_pred             cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence            9999999999999999999999999999999999999999999999888777665543 244443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.52  E-value=4.8e-13  Score=101.29  Aligned_cols=113  Identities=13%  Similarity=0.144  Sum_probs=98.9

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..++..|+|++|+..|.+++...|..+.            ...+++++|.++..+|+|++|+..++++++..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   71 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   71 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            456788999999999999999999999998776543            24579999999999999999999999999999


Q ss_pred             CCchH---HHHHHHHHHhc------------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 028390          140 PLNVK---ALYRRSQAHLK------------------TSELEKAEADIKRALTIDPNNRVVKLVYM  184 (209)
Q Consensus       140 p~~~~---~~~~~a~~~~~------------------~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  184 (209)
                      |++..   +++.+|.++..                  .|++++|+..|+++++..|+++.+...+.
T Consensus        72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~  137 (225)
T 2yhc_A           72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATK  137 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHH
Confidence            99865   89999999986                  67999999999999999999976654433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.52  E-value=4.5e-13  Score=101.90  Aligned_cols=144  Identities=17%  Similarity=0.159  Sum_probs=118.0

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh-----------HHHHHHHHHHHHHHhHHHHHHHhhcCHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-----------DEKHQANGLRLSCYLNNAACKLKLEDYSET  128 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A  128 (209)
                      +..+...|..+...|++++|+..|.+++.+.+.......           +......+....++.++|.++...|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            677889999999999999999999999996543110000           000002234567899999999999999999


Q ss_pred             HHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          129 SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       129 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      +..+.+++..+|.++.+++.+|.++..+|++++|+..++++++++|+++.+...+..+....++..+.. ..|.+.
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a  233 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL-ETLDAA  233 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999988877766543 244443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.51  E-value=9.1e-13  Score=101.38  Aligned_cols=115  Identities=18%  Similarity=0.082  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ...+..+...|..++..|++++|+..|.+++...|..               ..++.++|.++...|++++|+..+.+++
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al  104 (275)
T 1xnf_A           40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAYEAFDSVL  104 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3457778899999999999999999999999986653               3479999999999999999999999999


Q ss_pred             hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      .++|.+..+++.+|.++..+|++++|+..|+++++++|++......+..+
T Consensus       105 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A          105 ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            99999999999999999999999999999999999999998665555443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.51  E-value=2.1e-13  Score=97.52  Aligned_cols=97  Identities=9%  Similarity=-0.006  Sum_probs=88.9

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      ...+++++|.+++..|+|++|+..|.+++.++|.++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+..+.
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~  114 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence            35579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 028390          188 DKQREYAKYQAEIFGTML  205 (209)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~  205 (209)
                      ..+++..+... .|.+.+
T Consensus       115 ~~lg~~~eA~~-~~~~al  131 (151)
T 3gyz_A          115 LRLKAPLKAKE-CFELVI  131 (151)
T ss_dssp             HHTTCHHHHHH-HHHHHH
T ss_pred             HHcCCHHHHHH-HHHHHH
Confidence            99888876643 555543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.49  E-value=4.1e-13  Score=112.82  Aligned_cols=128  Identities=12%  Similarity=-0.008  Sum_probs=114.7

Q ss_pred             HHHHHHHhHHHHHcCCH-HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           60 CERKKHDGNLLFRAGKY-WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      +..+...|..++..|+| ++|+..|.+++.+.|..               ..++.++|.+|..+|++++|+..|.+++++
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  166 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL---------------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH  166 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            55678899999999999 99999999999987664               347999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhcc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 028390          139 EPLNVKALYRRSQAHLKT---------SELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ--------REYAKYQAEIF  201 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~--------~~~~~~~~~~~  201 (209)
                      +|+ ..+++.+|.++..+         |++++|+..|+++++++|++..++..+..+...+        ++..+... .|
T Consensus       167 ~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~-~~  244 (474)
T 4abn_A          167 CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS-AY  244 (474)
T ss_dssp             CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HH
T ss_pred             CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH-HH
Confidence            999 79999999999999         9999999999999999999999999999999887        66665533 44


Q ss_pred             Hhh
Q 028390          202 GTM  204 (209)
Q Consensus       202 ~~~  204 (209)
                      .+.
T Consensus       245 ~~a  247 (474)
T 4abn_A          245 AQA  247 (474)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.49  E-value=2.3e-13  Score=114.34  Aligned_cols=122  Identities=11%  Similarity=0.034  Sum_probs=111.7

Q ss_pred             HHHHHHhHHHHHc---------CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh--------c
Q 028390           61 ERKKHDGNLLFRA---------GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--------E  123 (209)
Q Consensus        61 ~~~~~~g~~~~~~---------~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~  123 (209)
                      ..+...|..+...         |++++|+..|.+++.+.|.+.               .++.++|.++..+        |
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG---------------RSWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHHHhhccccc
Confidence            4567788888888         999999999999999977643               4799999999999        9


Q ss_pred             CHHHHHHHHHHHhhhCC---CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028390          124 DYSETSSLCTKVLELEP---LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ  197 (209)
Q Consensus       124 ~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~  197 (209)
                      ++++|+..+++++.++|   .++.+++++|.+|..+|++++|+..|+++++++|+++.++..+..+...+++..+.-
T Consensus       236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   999999999999999999999999999999999999999999999988887766543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.49  E-value=3.5e-13  Score=100.37  Aligned_cols=103  Identities=17%  Similarity=0.108  Sum_probs=94.5

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..++..|++++|+..|.+++...|..               ..++.++|.++..+|++++|+..+.+++.+.
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            4578899999999999999999999999986653               3579999999999999999999999999988


Q ss_pred             CCch----------------HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390          140 PLNV----------------KALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  177 (209)
Q Consensus       140 p~~~----------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~  177 (209)
                      |.+.                .+++++|.++..+|++++|+..|+++++++|++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            8766                9999999999999999999999999999999763

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.49  E-value=4.9e-13  Score=102.96  Aligned_cols=117  Identities=12%  Similarity=0.065  Sum_probs=65.2

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .+...|..++..|++++|+..|.+++...|....               ++.++|.++..+|++++|+..+.+++. .|.
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---------------~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~   68 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY---------------IYNRRAVCYYELAKYDLAQKDIETYFS-KVN   68 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST---------------THHHHHHHHHHTTCHHHHHHHHHHHHT-TSC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHh-ccC
Confidence            3456788888888888888888888887666543               244555555555555555555555554 222


Q ss_pred             c----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390          142 N----VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  194 (209)
Q Consensus       142 ~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~  194 (209)
                      +    ..+++.+|.++..+|++++|+..|+++++++|.+..+...+..+....++..
T Consensus        69 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  125 (272)
T 3u4t_A           69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP  125 (272)
T ss_dssp             TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH
T ss_pred             chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHH
Confidence            2    2234555555555555555555555555555555555555555444444433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.48  E-value=1.6e-12  Score=98.18  Aligned_cols=121  Identities=17%  Similarity=0.152  Sum_probs=91.4

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ...+...|..++..|++++|+..|.+++...|..               ..++.++|.++..+|++++|+..+.+++..+
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  121 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALELDSSA---------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG  121 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            5667788999999999999999999999886543               2356777777777777777777777777777


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      |.+..+++.+|.++...|++++|+..+++++.+.|++..+...+..+....++..+
T Consensus       122 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence            77777777777777777777777777777777777777777777666665555443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.48  E-value=7.2e-14  Score=99.45  Aligned_cols=108  Identities=9%  Similarity=0.005  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHH
Q 028390           81 KKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELE  160 (209)
Q Consensus        81 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~  160 (209)
                      ..|.+++.+.|.+               ..+++++|.+++..|+|++|+..+.+++.++|.++.+++.+|.++..+|+++
T Consensus         8 ~~~~~al~~~p~~---------------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~   72 (148)
T 2vgx_A            8 GTIAMLNEISSDT---------------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD   72 (148)
T ss_dssp             CSHHHHTTCCHHH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHcCCHhh---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHH
Confidence            3466677665543               4578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          161 KAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       161 ~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      +|+..|++++.++|+++.+...+..+...+++..+... .|.+.
T Consensus        73 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~a  115 (148)
T 2vgx_A           73 LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAES-GLFLA  115 (148)
T ss_dssp             HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            99999999999999999999999999888877766533 44443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.48  E-value=1.3e-13  Score=120.69  Aligned_cols=127  Identities=11%  Similarity=0.104  Sum_probs=108.3

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP  140 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  140 (209)
                      ..+...|..++..|++++|+..|.+++...|.+.               .+++++|.++..+|++++|+..|+++++++|
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  498 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW---------------RLVWYRAVAELLTGDYDSATKHFTEVLDTFP  498 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4677889999999999999999999999877653               4789999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          141 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      ++..+++++|.++..+|++++ +..|+++++++|++..+...+..+...+++..+.. ..|.+.
T Consensus       499 ~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~-~~~~~a  560 (681)
T 2pzi_A          499 GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV-RTLDEV  560 (681)
T ss_dssp             TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHTS
T ss_pred             CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH-HHHHhh
Confidence            999999999999999999999 99999999999999999888888888877776553 244443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.48  E-value=3.9e-13  Score=107.82  Aligned_cols=122  Identities=14%  Similarity=0.106  Sum_probs=106.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..++..|++++|+..|.+++...|..               ..++.++|.++..+|++++|+..+.+++.++
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  281 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---------------YLLWNKLGATLANGNQSEEAVAAYRRALELQ  281 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4566778999999999999999999999886553               3478999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-----------RVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~-----------~~~~~~l~~l~~~~~~~~~~  196 (209)
                      |++..+++.+|.++..+|++++|+..|++++.+.|++           ..++..+..+...+++....
T Consensus       282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  349 (368)
T 1fch_A          282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  349 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence            9999999999999999999999999999999998888           78888888888877665544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.47  E-value=2.5e-12  Score=105.88  Aligned_cols=120  Identities=24%  Similarity=0.285  Sum_probs=108.0

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .....|..++..|++++|+..|.+++...|.++           .....++.++|.++..+|++++|+..+.+++.++|+
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  327 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIA-----------EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD  327 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            345669999999999999999999999866532           233567999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      +..+++.+|.++...|++++|+..|+++++++|+++.+...+..+...++.
T Consensus       328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ  378 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999988776654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.47  E-value=6.5e-13  Score=95.82  Aligned_cols=123  Identities=16%  Similarity=0.115  Sum_probs=111.4

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...|..++..|++++|+..|.+++...|..               ..++..+|.++...|++++|+..+.+++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   71 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD---------------VDVALHLGIAYVKTGAVDRGTELLERSLAD   71 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            35667889999999999999999999999875543               357899999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      +|.+..+++.+|.++...|++++|...+++++..+|.+..+...+..+....++..+.
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A  129 (186)
T 3as5_A           72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEA  129 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHH
Confidence            9999999999999999999999999999999999999999999999888777666554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.47  E-value=9.1e-13  Score=99.57  Aligned_cols=129  Identities=15%  Similarity=0.089  Sum_probs=109.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ...+...|..++..|++++|+..|.+++...|..+               .++..+|.++...|++++|+..+.+++..+
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  155 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG---------------DLFYMLGTVLVKLEQPKLALPYLQRAVELN  155 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH---------------HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            34567788999999999999999999999866542               368899999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      |.+..+++.+|.++...|++++|+..+++++..+|++..+...+..+....+...+.. ..|+++
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~  219 (243)
T 2q7f_A          156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL-EMLDKA  219 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH-HHHHHH
Confidence            9999999999999999999999999999999999999999888888887776655442 244444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.47  E-value=6.7e-13  Score=106.76  Aligned_cols=126  Identities=13%  Similarity=-0.022  Sum_probs=102.5

Q ss_pred             HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH
Q 028390           65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK  144 (209)
Q Consensus        65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  144 (209)
                      ..|..+...|++++|+..|.+++...|....             ..++.++|.++..+|++++|+..+.+++..+|++..
T Consensus       182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  248 (365)
T 4eqf_A          182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMID-------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS  248 (365)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHSCSSCC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhCcCccC-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            3478888899999999999999998766322             347899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          145 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       145 ~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      +++.+|.++..+|++++|+..|+++++++|++..+...+..+....++..+.. ..|.++
T Consensus       249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a  307 (365)
T 4eqf_A          249 LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV-SNFLTA  307 (365)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH-HHHHHH
Confidence            99999999999999999999999999999999999999999888877666543 244443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.46  E-value=2.4e-12  Score=95.85  Aligned_cols=87  Identities=17%  Similarity=0.048  Sum_probs=62.4

Q ss_pred             HHHhHHHHHHHhh-cCHHHHHHHHHHHhh--hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          110 SCYLNNAACKLKL-EDYSETSSLCTKVLE--LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       110 ~~~~~~a~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      .++.++|.++... |++++|+..+.+++.  .+|.+..+++.+|.++...|++++|+..++++++.+|++..+...+..+
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  156 (225)
T 2vq2_A           77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART  156 (225)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            3567777777777 777777777777777  5555667777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHH
Q 028390          187 KDKQREYAKY  196 (209)
Q Consensus       187 ~~~~~~~~~~  196 (209)
                      ....++..+.
T Consensus       157 ~~~~~~~~~A  166 (225)
T 2vq2_A          157 KMLAGQLGDA  166 (225)
T ss_dssp             HHHHTCHHHH
T ss_pred             HHHcCCHHHH
Confidence            6666655544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.46  E-value=1.5e-12  Score=105.68  Aligned_cols=143  Identities=15%  Similarity=0.095  Sum_probs=83.8

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC-------------hHHH------HHHHHHHHHHHhHHHHHHHh
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT-------------DDEK------HQANGLRLSCYLNNAACKLK  121 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~-------------~~~~------~~~~~~~~~~~~~~a~~~~~  121 (209)
                      ..+...|..+...|++++|+..|.+++.+.|......             .+-.      -...+....++.++|.++..
T Consensus       170 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  249 (388)
T 1w3b_A          170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE  249 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH
Confidence            4456677777777888888888888877655432100             0000      01111223455666666666


Q ss_pred             hcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028390          122 LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIF  201 (209)
Q Consensus       122 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~  201 (209)
                      .|++++|+..+.+++.++|+++.+++.+|.++...|++++|+..|+++++++|.+..+...+..+....+...+.. ..|
T Consensus       250 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~  328 (388)
T 1w3b_A          250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV-RLY  328 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHH
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH-HHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666655555544432 244


Q ss_pred             Hhh
Q 028390          202 GTM  204 (209)
Q Consensus       202 ~~~  204 (209)
                      .++
T Consensus       329 ~~a  331 (388)
T 1w3b_A          329 RKA  331 (388)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.46  E-value=1e-12  Score=106.68  Aligned_cols=117  Identities=20%  Similarity=0.127  Sum_probs=72.9

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..+...|++++|+..|.+++...|+..               .++.++|.++...|++++|+..+.+++..+
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  131 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI---------------DGYINLAAALVAAGDMEGAVQAYVSALQYN  131 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45678888899999999999999999988765532               245555555555555555555555555555


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      |++..++..+|.++..+|++++|+..|++++..+|++..+...+..+....+
T Consensus       132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  183 (388)
T 1w3b_A          132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG  183 (388)
T ss_dssp             TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            5555555555555555555555555555555555555555555554444333

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.46  E-value=8.8e-14  Score=121.86  Aligned_cols=112  Identities=12%  Similarity=0.001  Sum_probs=105.2

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..++..|++++|+..|.+++.+.|....               ++.++|.++..+|++++ +..|+++++++
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~---------------~~~~lg~~~~~~g~~~~-~~~~~~al~~~  530 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA---------------PKLALAATAELAGNTDE-HKFYQTVWSTN  530 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH---------------HHHHHHHHHHHHTCCCT-TCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------------HHHHHHHHHHHcCChHH-HHHHHHHHHhC
Confidence            456788999999999999999999999999887654               79999999999999999 99999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      |++..+++++|.++..+|++++|+..|+++++++|++..++..+..+.
T Consensus       531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998888876

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.45  E-value=1.8e-12  Score=102.97  Aligned_cols=112  Identities=22%  Similarity=0.243  Sum_probs=103.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..++..|++++|+..|.+++...|..               ..++.++|.++..+|++++|+..+.+++..+
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   67 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVIALK   67 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            5678899999999999999999999999986654               3479999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP---NNRVVKLVYMEL  186 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p---~~~~~~~~l~~l  186 (209)
                      |++..+++.+|.++...|++++|+..|+++++++|   +++.+...+..+
T Consensus        68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  117 (359)
T 3ieg_A           68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA  117 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH
Confidence            99999999999999999999999999999999999   888888777543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.45  E-value=4.1e-12  Score=94.58  Aligned_cols=86  Identities=13%  Similarity=0.109  Sum_probs=63.1

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP-NNRVVKLVYMELK  187 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l~~l~  187 (209)
                      ..++.++|.++...|++++|+..+.+++..+|.+..+++.+|.++...|++++|...+++++.++| .+......+..+.
T Consensus       113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (225)
T 2vq2_A          113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA  192 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            456777777777777777777777777777777777777777777777777777777777777777 7777766666665


Q ss_pred             HHHHHHH
Q 028390          188 DKQREYA  194 (209)
Q Consensus       188 ~~~~~~~  194 (209)
                      ...+...
T Consensus       193 ~~~~~~~  199 (225)
T 2vq2_A          193 KALGNAQ  199 (225)
T ss_dssp             HHTTCHH
T ss_pred             HhcCcHH
Confidence            5544443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.45  E-value=3.2e-12  Score=97.36  Aligned_cols=84  Identities=19%  Similarity=0.234  Sum_probs=46.0

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhh--hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLE--LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      ++.++|.++...|++++|+..+.+++.  ..|.+..+++.+|.++...|++++|+..+++++.++|.+..+...+..+..
T Consensus       107 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  186 (252)
T 2ho1_A          107 VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY  186 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence            455555555555555555555555555  455555555555555555555555555555555555555555555555554


Q ss_pred             HHHHHH
Q 028390          189 KQREYA  194 (209)
Q Consensus       189 ~~~~~~  194 (209)
                      ..++..
T Consensus       187 ~~g~~~  192 (252)
T 2ho1_A          187 KEREYV  192 (252)
T ss_dssp             HTTCHH
T ss_pred             HcCCHH
Confidence            444433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.44  E-value=3e-12  Score=98.50  Aligned_cols=115  Identities=17%  Similarity=0.166  Sum_probs=77.0

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .+...|..+...|++++|+..|.+++...|...               .++.++|.++..+|++++|+..+.+++.++|.
T Consensus        76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  140 (272)
T 3u4t_A           76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL---------------DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT  140 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---------------HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC
Confidence            355666666677777777777777776655433               25677777777777777777777777777777


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      ++.+++.+|...+..+++++|+..|+++++++|++..+...+..+...+.
T Consensus       141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~  190 (272)
T 3u4t_A          141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQD  190 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence            77777777733333447777777777777777777666666666655443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.44  E-value=7.5e-13  Score=106.48  Aligned_cols=122  Identities=14%  Similarity=0.139  Sum_probs=107.3

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..+...|++++|+..|.+++...|..               ..++.++|.++..+|++++|+..+.+++.++
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  277 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED---------------YSLWNRLGATLANGDRSEEAVEAYTRALEIQ  277 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            4567789999999999999999999999986654               3479999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------------RVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------------~~~~~~l~~l~~~~~~~~~~  196 (209)
                      |++..+++.+|.+|..+|++++|+..|+++++++|++            ..++..+..+...+......
T Consensus       278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  346 (365)
T 4eqf_A          278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF  346 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence            9999999999999999999999999999999999873            56677777777666655433

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.44  E-value=3.6e-12  Score=100.29  Aligned_cols=129  Identities=12%  Similarity=0.004  Sum_probs=104.0

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh-cCHHHHHHHHHHHhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-EDYSETSSLCTKVLE  137 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~  137 (209)
                      .+..+.+.|..+...|++++|+.+|.+|+.+.+.....         .....++.++|.+|... |++++|+..|++++.
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~  146 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELAGE  146 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            46678888899999999999999999999888765431         23356799999999996 999999999999999


Q ss_pred             hCCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHHHHHHHH
Q 028390          138 LEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV-------VKLVYMELKDKQREYAKY  196 (209)
Q Consensus       138 ~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~-------~~~~l~~l~~~~~~~~~~  196 (209)
                      +.|..      ..++.++|.++..+|++++|+..|++++.+.|++..       ....+..+...+++..+.
T Consensus       147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  218 (292)
T 1qqe_A          147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA  218 (292)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence            97754      567899999999999999999999999999988754       345555666555444433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.44  E-value=1e-12  Score=95.72  Aligned_cols=130  Identities=14%  Similarity=0.114  Sum_probs=97.9

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHH-----------
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS-----------  130 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-----------  130 (209)
                      .....|..++..|++++|+..|.+++...|.++.               ++.++|.++...|++++|+.           
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~---------------a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~   72 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD---------------VKLAKADCLLETKQFELAQELLATIPLEYQD   72 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH---------------HHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH---------------HHHHHHHHHHHCCCHHHHHHHHHHhhhccCC
Confidence            3567888889999999999999999988777543               45666666666666555544           


Q ss_pred             -----------------------HHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--HHHHHHHHH
Q 028390          131 -----------------------LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN--RVVKLVYME  185 (209)
Q Consensus       131 -----------------------~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l~~  185 (209)
                                             .+.+++..+|+++.+++.+|.++...|++++|+..|+++++++|+.  +.++..+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~  152 (176)
T 2r5s_A           73 NSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD  152 (176)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence                                   4455556678889999999999999999999999999999999875  568888888


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhc
Q 028390          186 LKDKQREYAKYQAEIFGTMLSK  207 (209)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~~  207 (209)
                      +...+....+. ...|.+.+..
T Consensus       153 ~~~~~g~~~~A-~~~y~~al~~  173 (176)
T 2r5s_A          153 ILSALGQGNAI-ASKYRRQLYS  173 (176)
T ss_dssp             HHHHHCSSCHH-HHHHHHHHHH
T ss_pred             HHHHhCCCCcH-HHHHHHHHHH
Confidence            88877665543 3355555443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.44  E-value=3e-12  Score=106.87  Aligned_cols=107  Identities=30%  Similarity=0.301  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      +.+.+..+...|..++..|+|++|+..|.+++...|+                ..++.++|.++..+|++++|+..+.++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED----------------PVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----------------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            3567889999999999999999999999999998652                357999999999999999999999999


Q ss_pred             hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH
Q 028390          136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV  178 (209)
Q Consensus       136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~  178 (209)
                      +..+|++..+++.+|.++..+|++++|+..|++++.++|.+..
T Consensus        66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence            9999999999999999999999999999999999999986643

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.44  E-value=1.4e-12  Score=88.15  Aligned_cols=101  Identities=8%  Similarity=-0.008  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC
Q 028390           78 RASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS  157 (209)
Q Consensus        78 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~  157 (209)
                      .|+..|.+++...|.++               .++.++|.++...|++++|+..+.+++.++|.+..+++.+|.++..+|
T Consensus         3 ~a~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   67 (115)
T 2kat_A            3 AITERLEAMLAQGTDNM---------------LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG   67 (115)
T ss_dssp             CHHHHHHHHHTTTCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence            57889999999866543               479999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHH
Q 028390          158 ELEKAEADIKRALTIDPN--NRVVKLVYMELKDKQREY  193 (209)
Q Consensus       158 ~~~~A~~~~~~a~~l~p~--~~~~~~~l~~l~~~~~~~  193 (209)
                      ++++|+..|++++.++|.  +......+..+...+...
T Consensus        68 ~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~~  105 (115)
T 2kat_A           68 DRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARE  105 (115)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhccc
Confidence            999999999999999884  455555555555555443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.44  E-value=2.2e-12  Score=101.53  Aligned_cols=123  Identities=17%  Similarity=0.093  Sum_probs=106.0

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ...+...|..++..|++++|+..|.+++...+.......      .+....++.++|.++..+|++++|+..+.+++.++
T Consensus       193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  266 (330)
T 3hym_B          193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI  266 (330)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence            455778999999999999999999999998754221100      00013479999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      |++..+++.+|.++..+|++++|...|+++++++|+++.+...+..+..
T Consensus       267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  315 (330)
T 3hym_B          267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE  315 (330)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.43  E-value=3.5e-12  Score=100.42  Aligned_cols=128  Identities=13%  Similarity=0.007  Sum_probs=103.6

Q ss_pred             HHHHHHhHHHHHcC-CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           61 ERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        61 ~~~~~~g~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ..+...|..++..| ++++|+..|.+++...|..+               .++.++|.++...|++++|+..+.+++...
T Consensus        91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  155 (330)
T 3hym_B           91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG---------------PAWIAYGHSFAVESEHDQAMAAYFTAAQLM  155 (330)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence            34667777778888 78888888888887765543               368899999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      |++..+++.+|.++...|++++|+..++++++++|+++.+...+..+....++..+... .|.+.
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a  219 (330)
T 3hym_B          156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK-WFLDA  219 (330)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH-HHHHH
Confidence            99888899999999999999999999999999999998888888888877766665433 34433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.43  E-value=3.5e-12  Score=100.61  Aligned_cols=115  Identities=15%  Similarity=0.094  Sum_probs=67.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHH----HHhhcCHHHHHHHHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC----KLKLEDYSETSSLCTKV  135 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~A~~~~~~a  135 (209)
                      ...+...|..+...|++++|+..|.+++...|...                 ..+++.+    +...|++++|+..++++
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----------------~~~l~~a~~~l~~~~~~~~eA~~~~~~~  192 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-----------------LTQLATAWVSLAAGGEKLQDAYYIFQEM  192 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------------HHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-----------------HHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            44566788888999999999999999988754421                 1122111    11234555555555555


Q ss_pred             hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      +..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..+..+....+
T Consensus       193 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g  248 (291)
T 3mkr_A          193 ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG  248 (291)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            55555555555555555555555555555555555555555555555554444433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.43  E-value=3.9e-14  Score=94.67  Aligned_cols=93  Identities=24%  Similarity=0.384  Sum_probs=71.5

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..++..|+|++|+..|.+++...|..+               .++.++|.++..+|++++|+..+.+++.++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP---------------VGYSNKAMALIKLGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            45667788888888888888888888888765532               367888888888888888888888888888


Q ss_pred             CCc------hHHHHHHHHHHhccCCHHHHHHHHH
Q 028390          140 PLN------VKALYRRSQAHLKTSELEKAEADIK  167 (209)
Q Consensus       140 p~~------~~~~~~~a~~~~~~~~~~~A~~~~~  167 (209)
                      |++      ..+++++|.++..+|+++.|+..++
T Consensus        69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           69 STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            887      7778888888888877776665544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.43  E-value=1.4e-12  Score=102.56  Aligned_cols=122  Identities=11%  Similarity=0.028  Sum_probs=102.5

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHH-------
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC-------  132 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~-------  132 (209)
                      ...+...|..+...|++++|+..|.+++...|.++               .++.++|.++...|++++|+..+       
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~la~~~~~~g~~~~A~~~l~~~~~~~  181 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG---------------EIGLLLAETLIALNRSEDAEAVLXTIPLQD  181 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH---------------HHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch---------------hHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence            45678999999999999999999999999987654               36777788877777777766554       


Q ss_pred             ---------------------------HHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--HHHHHHH
Q 028390          133 ---------------------------TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN--RVVKLVY  183 (209)
Q Consensus       133 ---------------------------~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l  183 (209)
                                                 .+++..+|++..+++.+|.++...|++++|+..|.+++..+|++  ..++..+
T Consensus       182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence                                       44566789999999999999999999999999999999999998  8899999


Q ss_pred             HHHHHHHHHHHHH
Q 028390          184 MELKDKQREYAKY  196 (209)
Q Consensus       184 ~~l~~~~~~~~~~  196 (209)
                      ..+...+......
T Consensus       262 ~~~~~~~g~~~~a  274 (287)
T 3qou_A          262 QEILAALGTGDAL  274 (287)
T ss_dssp             HHHHHHHCTTCHH
T ss_pred             HHHHHHcCCCCcH
Confidence            9998887654443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.43  E-value=1.7e-13  Score=99.58  Aligned_cols=124  Identities=14%  Similarity=0.088  Sum_probs=104.3

Q ss_pred             HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHH
Q 028390           66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA  145 (209)
Q Consensus        66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  145 (209)
                      .+..++..|++++|+..|.+++...|..               ..++..+|.++...|++++|+..+.+++.++|.++.+
T Consensus        16 ~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~   80 (177)
T 2e2e_A           16 PLHQFASQQNPEAQLQALQDKIRANPQN---------------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL   80 (177)
T ss_dssp             TTCCCC-----CCCCHHHHHHHHHCCSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHH
T ss_pred             hhhhhhhccCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence            4455677899999999999999986654               3479999999999999999999999999999999999


Q ss_pred             HHHHHHH-HhccCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          146 LYRRSQA-HLKTSEL--EKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       146 ~~~~a~~-~~~~~~~--~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                      ++.+|.+ +...|++  ++|+..+++++.++|++..+...+..+....+...+... .|.+.+
T Consensus        81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al  142 (177)
T 2e2e_A           81 YAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE-LWQKVM  142 (177)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH-HHHHHH
Confidence            9999999 8899999  999999999999999999999999999888877765533 455443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.42  E-value=6.1e-12  Score=95.17  Aligned_cols=130  Identities=7%  Similarity=-0.026  Sum_probs=108.0

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh------------------h
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK------------------L  122 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~------------------~  122 (209)
                      ..+...|..++..|+|++|+..|.+++...|..+.            ...+++.+|.++..                  .
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~------------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  109 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------------IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDP  109 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------------HHHHHHHHHHHHHHHHC--------------CC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc------------HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCc
Confidence            46778999999999999999999999999887654            13467788888775                  6


Q ss_pred             cCHHHHHHHHHHHhhhCCCchHHH-----------------HHHHHHHhccCCHHHHHHHHHHHHhcCCCCH---HHHHH
Q 028390          123 EDYSETSSLCTKVLELEPLNVKAL-----------------YRRSQAHLKTSELEKAEADIKRALTIDPNNR---VVKLV  182 (209)
Q Consensus       123 ~~~~~A~~~~~~al~~~p~~~~~~-----------------~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~~  182 (209)
                      |++++|+..+.++++..|++..+.                 +.+|.+|...|++++|+..|+++++..|+++   .+...
T Consensus       110 ~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  189 (225)
T 2yhc_A          110 QQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPL  189 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHH
Confidence            799999999999999999987554                 6789999999999999999999999999986   56777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 028390          183 YMELKDKQREYAKYQAEIFGT  203 (209)
Q Consensus       183 l~~l~~~~~~~~~~~~~~~~~  203 (209)
                      +..+...++...+.. ..+++
T Consensus       190 l~~~~~~~g~~~~A~-~~~~~  209 (225)
T 2yhc_A          190 MENAYRQMQMNAQAE-KVAKI  209 (225)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHH
T ss_pred             HHHHHHHcCCcHHHH-HHHHH
Confidence            777777777766553 34443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.42  E-value=2.6e-12  Score=101.03  Aligned_cols=122  Identities=14%  Similarity=0.117  Sum_probs=110.6

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ...+...|..++..|++++|+..|.+++...|..               ..++.++|.++...|++++|+..+.++++.+
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  236 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD---------------AQLWNKLGATLANGNRPQEALDAYNRALDIN  236 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            4557788999999999999999999999986654               3479999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN------------NRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~------------~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      |.+..+++.+|.++..+|++++|+..+++++.+.|+            +..+...+..+...+++..+.
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  305 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV  305 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999999999999999999999999999            788888899988887776654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.42  E-value=2.9e-12  Score=87.84  Aligned_cols=89  Identities=18%  Similarity=0.157  Sum_probs=83.5

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      ...+.++|.+++..|+|++|+..+.+++.++|.++.+++++|.++..+|++++|+.+++++++++|++..+...+..+..
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHH
Q 028390          189 KQREYAKYQ  197 (209)
Q Consensus       189 ~~~~~~~~~  197 (209)
                      .+++..+..
T Consensus        84 ~~~~~~~A~   92 (126)
T 3upv_A           84 AVKEYASAL   92 (126)
T ss_dssp             HTTCHHHHH
T ss_pred             HHhCHHHHH
Confidence            887776553

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.42  E-value=2.4e-12  Score=98.09  Aligned_cols=130  Identities=15%  Similarity=0.007  Sum_probs=114.3

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...|..++..|++++|+..|.+++...|..               ..++..+|.++...|++++|+..+.+++..
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  100 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS---------------ADAHAALAVVFQTEMEPKLADEEYRKALAS  100 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            37788999999999999999999999999986543               347999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALT--IDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      +|.+..+++.+|.++...|++++|+..+++++.  ..|.+..+...+..+....++..+... .|.+.
T Consensus       101 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~  167 (252)
T 2ho1_A          101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE-YFEKS  167 (252)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            999999999999999999999999999999999  888888999888888877766655432 44443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.42  E-value=9.1e-13  Score=91.22  Aligned_cols=89  Identities=12%  Similarity=0.146  Sum_probs=75.9

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH-------HH
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV-------VK  180 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~-------~~  180 (209)
                      .+.++.++|.++++.|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+.+++++++++|++..       +.
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999887643       44


Q ss_pred             HHHHHHHHHHHHHHHH
Q 028390          181 LVYMELKDKQREYAKY  196 (209)
Q Consensus       181 ~~l~~l~~~~~~~~~~  196 (209)
                      ..+..+...++.+.+.
T Consensus        87 ~~lg~~~~~~~~~~~A  102 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLA  102 (127)
T ss_dssp             HHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCHHHH
Confidence            4555555555555443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.41  E-value=8.5e-12  Score=99.97  Aligned_cols=96  Identities=13%  Similarity=0.005  Sum_probs=85.9

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      ...++.++|.++...|++++|+..+.+++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  295 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  295 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 028390          188 DKQREYAKYQAEIFGTM  204 (209)
Q Consensus       188 ~~~~~~~~~~~~~~~~~  204 (209)
                      ...++..+... .|.++
T Consensus       296 ~~~g~~~~A~~-~~~~a  311 (368)
T 1fch_A          296 INLGAHREAVE-HFLEA  311 (368)
T ss_dssp             HHHTCHHHHHH-HHHHH
T ss_pred             HHCCCHHHHHH-HHHHH
Confidence            88877765533 44443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.41  E-value=9.8e-12  Score=102.35  Aligned_cols=114  Identities=22%  Similarity=0.237  Sum_probs=103.9

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+..+...|..++..|++++|+..|.+++...|..               ..++.++|.++..+|++++|+..+.+++.
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~   88 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVIQ   88 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            457778899999999999999999999999986653               35799999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR---VVKLVYMEL  186 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~~l~~l  186 (209)
                      .+|++..+++.+|.+|..+|++++|+..|+++++++|++.   .+...+..+
T Consensus        89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  140 (450)
T 2y4t_A           89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS  140 (450)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988   776666444

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.41  E-value=9.2e-12  Score=95.61  Aligned_cols=140  Identities=22%  Similarity=0.179  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ...+..+...|..++..|++++|+..|.+++.+........       .+....++.++|.++..+|++++|+..+.+++
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  112 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL  112 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34577788999999999999999999999999864321000       13456789999999999999999999999999


Q ss_pred             hh--------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028390          137 EL--------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI--------DPNNRVVKLVYMELKDKQREYAKYQAEI  200 (209)
Q Consensus       137 ~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~~~~~l~~l~~~~~~~~~~~~~~  200 (209)
                      .+        +|....+++.+|.++..+|++++|+..+++++.+        .|....+...+..+....++..+... .
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~  191 (283)
T 3edt_B          113 EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET-L  191 (283)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-H
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-H
Confidence            88        4777889999999999999999999999999998        66667788888888887777665533 4


Q ss_pred             HHhh
Q 028390          201 FGTM  204 (209)
Q Consensus       201 ~~~~  204 (209)
                      |.+.
T Consensus       192 ~~~~  195 (283)
T 3edt_B          192 YKEI  195 (283)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.40  E-value=9.6e-12  Score=85.29  Aligned_cols=94  Identities=16%  Similarity=0.126  Sum_probs=86.2

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      .++.+|.+++..|++++|+..+.+++..+|++..+++.+|.++..+|++++|+..|+++++++|++..+...+..+....
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhhh
Q 028390          191 REYAKYQAEIFGTML  205 (209)
Q Consensus       191 ~~~~~~~~~~~~~~~  205 (209)
                      ++..+... .|.+.+
T Consensus        99 g~~~~A~~-~~~~al  112 (121)
T 1hxi_A           99 HNANAALA-SLRAWL  112 (121)
T ss_dssp             HHHHHHHH-HHHHHH
T ss_pred             CCHHHHHH-HHHHHH
Confidence            88876643 555543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.40  E-value=6.8e-12  Score=85.52  Aligned_cols=102  Identities=27%  Similarity=0.387  Sum_probs=92.5

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ...+...|..++..|++++|+..|.+++...|..               ..++.++|.++...|++++|+..+.+++...
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~   99 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD   99 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            3456678999999999999999999999986543               3468999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  176 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~  176 (209)
                      |.+..+++.+|.++...|++++|...+++++.++|++
T Consensus       100 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999999864

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.40  E-value=1.3e-12  Score=109.85  Aligned_cols=115  Identities=24%  Similarity=0.313  Sum_probs=99.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHH
Q 028390           49 WKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSET  128 (209)
Q Consensus        49 ~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A  128 (209)
                      ..++..+....+..+...|..++..|+|++|+..|.+++...|.+               ..++.++|.|+..+|++++|
T Consensus        14 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A   78 (537)
T 3fp2_A           14 KGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE---------------PVFYSNISACYISTGDLEKV   78 (537)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHH
T ss_pred             cCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHH
Confidence            446778888899999999999999999999999999999987664               35799999999999999999


Q ss_pred             HHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 028390          129 SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV  179 (209)
Q Consensus       129 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~  179 (209)
                      +..+.+++.++|+++.+++.+|.++..+|++++|+..|+ ++.++|+....
T Consensus        79 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~  128 (537)
T 3fp2_A           79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA  128 (537)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH
Confidence            999999999999999999999999999999999999995 88888876543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.40  E-value=6.1e-12  Score=98.97  Aligned_cols=112  Identities=21%  Similarity=0.235  Sum_probs=92.3

Q ss_pred             HHHHHHHHhHHHHHc-CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           59 ACERKKHDGNLLFRA-GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~-~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      .+..+...|..+... |++++|+.+|.+|+.+.+.....         .....++.++|.++..+|+|++|+..+++++.
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV---------ALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            356788899999996 99999999999999998865431         22346799999999999999999999999999


Q ss_pred             hCCCchH-------HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 028390          138 LEPLNVK-------ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV  179 (209)
Q Consensus       138 ~~p~~~~-------~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~  179 (209)
                      +.|.+..       +++++|.|+..+|++++|+.+|+++++++|+....
T Consensus       187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            9887643       68999999999999999999999999999987654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.37  E-value=1.2e-11  Score=82.33  Aligned_cols=83  Identities=12%  Similarity=0.093  Sum_probs=74.8

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------HHHHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLV  182 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~  182 (209)
                      ...+.++|.+++..|+|++|+..+++++.++|.++.+++++|.++..+|++++|+..++++++++|++      ..+...
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999998      666666


Q ss_pred             HHHHHHHHH
Q 028390          183 YMELKDKQR  191 (209)
Q Consensus       183 l~~l~~~~~  191 (209)
                      +..+...++
T Consensus        84 ~~~~~~~~~   92 (111)
T 2l6j_A           84 LELAQGAVG   92 (111)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666655443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.37  E-value=1.1e-11  Score=87.05  Aligned_cols=94  Identities=9%  Similarity=0.041  Sum_probs=85.5

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      ...++++|.+++..|+|++|+..+.+++..+|.++.+++.+|.++..+|++++|+..|++++.++|+++.+...+..+..
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHh
Q 028390          189 KQREYAKYQAEIFGT  203 (209)
Q Consensus       189 ~~~~~~~~~~~~~~~  203 (209)
                      .+++..+... .|.+
T Consensus        98 ~~g~~~~A~~-~~~~  111 (142)
T 2xcb_A           98 QLGDLDGAES-GFYS  111 (142)
T ss_dssp             HTTCHHHHHH-HHHH
T ss_pred             HcCCHHHHHH-HHHH
Confidence            8877766533 4443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.36  E-value=1.7e-11  Score=78.66  Aligned_cols=82  Identities=30%  Similarity=0.387  Sum_probs=76.9

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      ...++.++|.++...|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..+++++.++|+++.+...+..+.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999998888776


Q ss_pred             HH
Q 028390          188 DK  189 (209)
Q Consensus       188 ~~  189 (209)
                      ..
T Consensus        88 ~~   89 (91)
T 1na3_A           88 QK   89 (91)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.36  E-value=1.2e-11  Score=88.77  Aligned_cols=96  Identities=19%  Similarity=0.187  Sum_probs=87.7

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      ....+..+|.+++..|+|++|+..|.+++.++|.+..+++++|.+|..+|++++|+.+|+++++++|++..++..+..+.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 028390          188 DKQREYAKYQAEIFGTM  204 (209)
Q Consensus       188 ~~~~~~~~~~~~~~~~~  204 (209)
                      ..++++.+... .|.+.
T Consensus        90 ~~~g~~~~A~~-~~~~a  105 (164)
T 3sz7_A           90 FDMADYKGAKE-AYEKG  105 (164)
T ss_dssp             HHTTCHHHHHH-HHHHH
T ss_pred             HHccCHHHHHH-HHHHH
Confidence            88888776543 44444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.35  E-value=8.8e-12  Score=95.80  Aligned_cols=124  Identities=10%  Similarity=-0.043  Sum_probs=105.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHH
Q 028390           70 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRR  149 (209)
Q Consensus        70 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  149 (209)
                      ....|++++|+..|.+++...+..           .+....++.++|.++...|++++|+..+.+++.++|.+..+++.+
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l   83 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALT-----------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL   83 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             cCccchHHHHHHHHHHHHhccccc-----------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            344588999999999999863211           123466899999999999999999999999999999999999999


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          150 SQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       150 a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                      |.++...|++++|+..|+++++++|.+..+...+..+....++..+.. ..|.+++
T Consensus        84 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~  138 (275)
T 1xnf_A           84 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ-DDLLAFY  138 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence            999999999999999999999999999999999999988887776553 3555443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.35  E-value=2.5e-11  Score=98.60  Aligned_cols=132  Identities=20%  Similarity=0.163  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ...+..+...|..++..|+++.|+.+|.+|+.+.+.....        ......++.++|.+|..+|++++|+..+.+++
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  211 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAY  211 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3457778889999999999999999999999988776542        13456688999999999999999999999998


Q ss_pred             hhCCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHHHHHHHHH
Q 028390          137 ELEPLN------VKALYRRSQAHLKTSELEKAEADIKRALT-----ID-PNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       137 ~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-----l~-p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      .+.+..      ..+++++|.+|..+|++++|+.+++++++     .+ |....+...++.+...+++..+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  283 (383)
T 3ulq_A          212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA  283 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH
Confidence            875433      35788999999999999999999999988     35 66677777888877766665544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.35  E-value=3.1e-11  Score=84.88  Aligned_cols=132  Identities=14%  Similarity=0.066  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      ....+..+...|..++..|++++|+..|.+++.+.+....         ......++.++|.++..+|++++|+..+.++
T Consensus         5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   75 (164)
T 3ro3_A            5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERIAYSNLGNAYIFLGEFETASEYYKKT   75 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3456778899999999999999999999999999876543         1344568999999999999999999999999


Q ss_pred             hhhCCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHHHHHHHH
Q 028390          136 LELEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPN--N----RVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       136 l~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~--~----~~~~~~l~~l~~~~~~~~~~  196 (209)
                      +.+.+..      ..+++.+|.++..+|++++|+..+++++.+.+.  +    ..+...+..+....++..+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  148 (164)
T 3ro3_A           76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  148 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence            9875442      668999999999999999999999999987432  2    34555666666666655544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.34  E-value=2.4e-11  Score=101.29  Aligned_cols=121  Identities=14%  Similarity=0.170  Sum_probs=103.9

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh---hcCHHHHHHHHHHHhh
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK---LEDYSETSSLCTKVLE  137 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~  137 (209)
                      ..+...|..++..|++++|+..|.+++...|..+...         ....++.++|.++..   .|++++|+..+.+++.
T Consensus       373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~  443 (514)
T 2gw1_A          373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY---------VGIAPLVGKATLLTRNPTVENFIEATNLLEKASK  443 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS---------SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH---------HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence            3466778888888899999999998888877765310         002368999999999   9999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      .+|++..+++.+|.++...|++++|...|+++++++|+++.+...+..+....
T Consensus       444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  496 (514)
T 2gw1_A          444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAK  496 (514)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988877665543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.34  E-value=8.2e-12  Score=104.98  Aligned_cols=143  Identities=14%  Similarity=0.099  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCC-------------ChHHH------HHHHHHHHHHHh
Q 028390           53 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF-------------TDDEK------HQANGLRLSCYL  113 (209)
Q Consensus        53 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~-------------~~~~~------~~~~~~~~~~~~  113 (209)
                      .......+..+...|..++..|++++|+..|.+++...|. ...             ..+-.      ....+....++.
T Consensus       236 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  314 (537)
T 3fp2_A          236 DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYY  314 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHH
Confidence            3344556778889999999999999999999999987654 110             00000      111222345788


Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 028390          114 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  193 (209)
Q Consensus       114 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~  193 (209)
                      ++|.++...|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..++++++++|+++.+...+..+....++.
T Consensus       315 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  394 (537)
T 3fp2_A          315 HRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF  394 (537)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888877776666


Q ss_pred             HHH
Q 028390          194 AKY  196 (209)
Q Consensus       194 ~~~  196 (209)
                      .+.
T Consensus       395 ~~A  397 (537)
T 3fp2_A          395 DTA  397 (537)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.34  E-value=3.1e-11  Score=102.94  Aligned_cols=119  Identities=14%  Similarity=0.082  Sum_probs=101.1

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP  140 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  140 (209)
                      ..+...|..+...|++++|+..|.+++...+..+..+        .....+|.++|.++...|++++|+..++++++.+|
T Consensus       476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  547 (597)
T 2xpi_A          476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE--------KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST  547 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS--------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch--------hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            3466777778888888888888888887765422211        01256899999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          141 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      ++..+++.+|.+|...|++++|...|+++++++|+++.+...+..+.
T Consensus       548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          548 NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL  594 (597)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998888764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.33  E-value=4.4e-11  Score=99.19  Aligned_cols=126  Identities=17%  Similarity=0.061  Sum_probs=100.8

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..++..|++++|+..|.+|+++.+......      ........|.|+|.+|..+|++++|+.++++++.+.
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~------~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG------CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            44567789999999999999999999999865422100      001135678999999999999999999999999763


Q ss_pred             --------CCchHHHHHHHHHHhcc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          140 --------PLNVKALYRRSQAHLKT--SELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       140 --------p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                              +..+.++..+|.++...  +++++|+.+|+++++++|+++.+...+..+..++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~  186 (472)
T 4g1t_A          125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD  186 (472)
T ss_dssp             HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence                    34578888898887765  47999999999999999999999888887765543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.33  E-value=2e-11  Score=96.20  Aligned_cols=96  Identities=10%  Similarity=0.074  Sum_probs=87.4

Q ss_pred             HHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHH
Q 028390           71 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS  150 (209)
Q Consensus        71 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a  150 (209)
                      ...|++++|+..|.+++...|.+               ..+++++|.++..+|++++|+..+.+++..+|+++.+++++|
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~  241 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSPT---------------LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV  241 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34589999999999999986653               357999999999999999999999999999999999999999


Q ss_pred             HHHhccCCHHH-HHHHHHHHHhcCCCCHHHHH
Q 028390          151 QAHLKTSELEK-AEADIKRALTIDPNNRVVKL  181 (209)
Q Consensus       151 ~~~~~~~~~~~-A~~~~~~a~~l~p~~~~~~~  181 (209)
                      .++..+|++++ +..+++++++++|+++.+..
T Consensus       242 ~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            99999999976 57899999999999998765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.32  E-value=9.9e-11  Score=91.89  Aligned_cols=143  Identities=10%  Similarity=-0.023  Sum_probs=110.8

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh------------------------HHHHH----------HHH
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD------------------------DEKHQ----------ANG  106 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~------------------------~~~~~----------~~~  106 (209)
                      ..+...|..+...|++++|+..|.+++...|.......                        .....          ..+
T Consensus        90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  169 (327)
T 3cv0_A           90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP  169 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence            44566777777888888888888888776655432210                        00000          111


Q ss_pred             HHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          107 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       107 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      ....++..+|.++...|++++|+..+.+++..+|++..+++.+|.++...|++++|+..++++++++|++..+...+..+
T Consensus       170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  249 (327)
T 3cv0_A          170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS  249 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            13567899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 028390          187 KDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~  204 (209)
                      ....++..+... .|.+.
T Consensus       250 ~~~~g~~~~A~~-~~~~a  266 (327)
T 3cv0_A          250 YSNMSQYDLAAK-QLVRA  266 (327)
T ss_dssp             HHHTTCHHHHHH-HHHHH
T ss_pred             HHHhccHHHHHH-HHHHH
Confidence            887777665432 44433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.31  E-value=1.9e-11  Score=87.50  Aligned_cols=95  Identities=15%  Similarity=0.133  Sum_probs=84.1

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC-------chH-----HHHHHHHHHhccCCHHHHHHHHHHHHhc----
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPL-------NVK-----ALYRRSQAHLKTSELEKAEADIKRALTI----  172 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~a~~l----  172 (209)
                      ...+.++|..+++.|+|++|+..|+++|+++|+       +..     +|+++|.|+..+|++++|+.++++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            456899999999999999999999999999999       444     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          173 ---DPNNRVVK----LVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       173 ---~p~~~~~~----~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                         +|++..++    ..+..+...++.+.+.-. .|.+.
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~-~y~kA  128 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMP-EFKKV  128 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH-HHHHH
Confidence               99999999    889888888887776643 44443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.31  E-value=4.3e-11  Score=102.03  Aligned_cols=130  Identities=9%  Similarity=-0.017  Sum_probs=112.7

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ...+...|..+.+.|++++|+..|.+++...|.+               ..+|+.++.++...|++++|+..+.+++..+
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF---------------GPAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4456778899999999999999999999875543               3478999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                      |++..+++.+|.+|...|++++|+..|+++++++|.++.+...+..+..+.+...+... .|.+|+
T Consensus       438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~  502 (597)
T 2xpi_A          438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN-HFQNAL  502 (597)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH-HHHHHH
Confidence            99999999999999999999999999999999999999999999998887777665533 555554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.31  E-value=1e-11  Score=106.27  Aligned_cols=116  Identities=14%  Similarity=0.101  Sum_probs=87.3

Q ss_pred             cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHH
Q 028390           73 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA  152 (209)
Q Consensus        73 ~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~  152 (209)
                      .|++++|+..|.+++...|..               ..++.++|.++...|++++|+..++++++++|++..+++.+|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   66 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQD---------------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV   66 (568)
T ss_dssp             -------------------CC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            478999999999999986654               34799999999999999999999999999999999999999999


Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          153 HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       153 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      |..+|++++|+..|+++++++|++..+...+..+....++..+... .|.+.
T Consensus        67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~a  117 (568)
T 2vsy_A           67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAA-AYTRA  117 (568)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            9999999999999999999999999999999999988877766533 44443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.30  E-value=1.2e-10  Score=94.60  Aligned_cols=109  Identities=17%  Similarity=0.014  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ...+..+...|..+...|+|++|+.+|.+|+.+.+....         ......++.++|.+|..+|++++|+..+.+++
T Consensus       179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  249 (378)
T 3q15_A          179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAA  249 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            356778889999999999999999999999998775443         23556789999999999999999999999999


Q ss_pred             h-----hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 028390          137 E-----LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP  174 (209)
Q Consensus       137 ~-----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p  174 (209)
                      .     .+|....+++.+|.++..+|++++|..++++++++.+
T Consensus       250 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          250 KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            9     7888899999999999999999999999999999854

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.30  E-value=5e-11  Score=82.39  Aligned_cols=95  Identities=17%  Similarity=0.158  Sum_probs=86.0

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      ...+..+|.+++..|+|++|+..+.+++.++|.+..+++.+|.++..+|++++|+..++++++++|++..+...+..+..
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            55799999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHhh
Q 028390          189 KQREYAKYQAEIFGTM  204 (209)
Q Consensus       189 ~~~~~~~~~~~~~~~~  204 (209)
                      .++...+.. ..|.+.
T Consensus        89 ~~~~~~~A~-~~~~~a  103 (137)
T 3q49_B           89 EMESYDEAI-ANLQRA  103 (137)
T ss_dssp             HTTCHHHHH-HHHHHH
T ss_pred             HHhhHHHHH-HHHHHH
Confidence            887776553 244433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.30  E-value=2.7e-11  Score=95.09  Aligned_cols=124  Identities=14%  Similarity=0.008  Sum_probs=100.8

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-  138 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-  138 (209)
                      +..+...|..++..+++++|+.+|.+++.+.......         .....+++++|.+|..+|+|++|+..+.+++.. 
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  185 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQL  185 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4445568888888899999999999999965543332         123557999999999999999999999999942 


Q ss_pred             ------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHH
Q 028390          139 ------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQRE  192 (209)
Q Consensus       139 ------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~l~~~~~~  192 (209)
                            .+....+++++|.+|..+|++++|+.++++++++.+..      ..+...+..+...+++
T Consensus       186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~  251 (293)
T 3u3w_A          186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence                  23346689999999999999999999999999986543      6788888888887774

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.29  E-value=8.9e-11  Score=95.30  Aligned_cols=110  Identities=16%  Similarity=0.193  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      ....+..+...|..+...|++++|+.+|.+|+.+.+....         ......++.++|.+|..+|++++|+..+.++
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  250 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA  250 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3455778889999999999999999999999999887643         2455678999999999999999999999999


Q ss_pred             hh-----hC-CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 028390          136 LE-----LE-PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP  174 (209)
Q Consensus       136 l~-----~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p  174 (209)
                      +.     .+ |....+++++|.++..+|++++|..++++++.+.+
T Consensus       251 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            99     46 77899999999999999999999999999998843

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.29  E-value=4.5e-11  Score=91.72  Aligned_cols=109  Identities=20%  Similarity=0.074  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ...+..+...|..++..|++++|+..|.+++.+........       .+....++.++|.++..+|++++|+..+.+++
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  154 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL  154 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34567788999999999999999999999999864321100       02356789999999999999999999999999


Q ss_pred             hh--------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          137 EL--------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       137 ~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                      .+        +|....+++.+|.++..+|++++|+..+++++++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            98        7777889999999999999999999999999986

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.29  E-value=1.4e-10  Score=97.77  Aligned_cols=142  Identities=18%  Similarity=0.159  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390           55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK  134 (209)
Q Consensus        55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  134 (209)
                      .....+....+.+..+..+|+|++|+..|.+++.+........       .+..+..++|+|.+|..+|+|++|+..+.+
T Consensus       304 ~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~  376 (490)
T 3n71_A          304 EMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-------NLYVLRLLSIASEVLSYLQAYEEASHYARR  376 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3455566777888888899999999999999999865432211       134577899999999999999999999999


Q ss_pred             Hhhh-----CCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhc-----CCCCHHHHH---HHHHHHHHHHHHHHHHH
Q 028390          135 VLEL-----EPLN---VKALYRRSQAHLKTSELEKAEADIKRALTI-----DPNNRVVKL---VYMELKDKQREYAKYQA  198 (209)
Q Consensus       135 al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~---~l~~l~~~~~~~~~~~~  198 (209)
                      ++.+     .|++   ...+.++|.+|..+|++++|+..|++|+.+     -|+++.+..   .+..++..++.+++.+.
T Consensus       377 aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~  456 (490)
T 3n71_A          377 MVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF  456 (490)
T ss_dssp             HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9965     4555   567999999999999999999999999975     577765554   55666666667766654


Q ss_pred             HHHHhh
Q 028390          199 EIFGTM  204 (209)
Q Consensus       199 ~~~~~~  204 (209)
                       .|+++
T Consensus       457 -~~~~~  461 (490)
T 3n71_A          457 -MYHKM  461 (490)
T ss_dssp             -HHHHH
T ss_pred             -HHHHH
Confidence             45544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.28  E-value=4.9e-11  Score=93.66  Aligned_cols=107  Identities=18%  Similarity=0.129  Sum_probs=92.6

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...|..++..|+|++|+.+|.+++......+..        ......+++|+|.+|..+|+|++|+..+.+++++
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~  225 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45578899999999999999999999999887654332        2456778999999999999999999999999988


Q ss_pred             CCCc------hHHHHHHHHHHhccC-CHHHHHHHHHHHHhcC
Q 028390          139 EPLN------VKALYRRSQAHLKTS-ELEKAEADIKRALTID  173 (209)
Q Consensus       139 ~p~~------~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~l~  173 (209)
                      .+..      ..+++++|.+|..+| ++++|+.+|++|+.+.
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            6443      789999999999999 5799999999999763

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.28  E-value=7.3e-11  Score=95.79  Aligned_cols=139  Identities=12%  Similarity=0.014  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ...+..+...|..++..|+++.|+.+|.+|+.+.+.....        ....+.+++++|.+|..+|+|++|+..+.+++
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  209 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL  209 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4456677778888888888888888888888877664432        12457789999999999999999999999999


Q ss_pred             hhCC------CchHHHHHHHHHHhccCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          137 ELEP------LNVKALYRRSQAHLKTSELEKAEADIKRALT-----IDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       137 ~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-----l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      ++.+      ....+++++|.+|..+|++++|+.++++++.     .+|....+...++.+...+++..+... .+.+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a  287 (378)
T 3q15_A          210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ-FIEEG  287 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH-HHHHH
Confidence            8732      1256899999999999999999999999999     678778888889998888777765533 44443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.27  E-value=6.6e-11  Score=93.67  Aligned_cols=108  Identities=13%  Similarity=0.086  Sum_probs=87.8

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...|..+.. |++++|+.+|.+|+.+.+....         ......++.++|.++..+|+|++|+..+++++.+
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45667778888877 8888888888888888776433         1234568899999999999999999999999988


Q ss_pred             CCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390          139 EPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  177 (209)
Q Consensus       139 ~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~  177 (209)
                      .|.+      ..+++.+|.++..+|++++|+..|++++ ++|...
T Consensus       185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            6543      3478889999999999999999999999 998654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.27  E-value=1.4e-10  Score=90.39  Aligned_cols=139  Identities=22%  Similarity=0.198  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH--HSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK  134 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  134 (209)
                      ...+..+...|..++..|++++|+..|.+++.+....  ..         .+....++.++|.++..+|++++|+..+.+
T Consensus        66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  136 (311)
T 3nf1_A           66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD---------HPAVAATLNNLAVLYGKRGKYKEAEPLCKR  136 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            3446678889999999999999999999999986432  11         133567899999999999999999999999


Q ss_pred             HhhhC--------CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028390          135 VLELE--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTI--------DPNNRVVKLVYMELKDKQREYAKYQA  198 (209)
Q Consensus       135 al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~~~~~l~~l~~~~~~~~~~~~  198 (209)
                      ++.+.        |....+++.+|.++...|++++|+..+++++.+        .|....+...+..+....++..+...
T Consensus       137 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  216 (311)
T 3nf1_A          137 ALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET  216 (311)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99874        556788999999999999999999999999998        66667778888888887777665533


Q ss_pred             HHHHhhh
Q 028390          199 EIFGTML  205 (209)
Q Consensus       199 ~~~~~~~  205 (209)
                       .|.+++
T Consensus       217 -~~~~al  222 (311)
T 3nf1_A          217 -LYKEIL  222 (311)
T ss_dssp             -HHHHHH
T ss_pred             -HHHHHH
Confidence             444443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.27  E-value=5.6e-11  Score=78.52  Aligned_cols=79  Identities=14%  Similarity=0.104  Sum_probs=69.5

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYMEL  186 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~l  186 (209)
                      ..++.++|.++..+|++++|+..++++++++|+++.+++.+|.+|..+|++++|+..|++++++.|.  +......+..+
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~   86 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDA   86 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence            4579999999999999999999999999999999999999999999999999999999999999764  44444444444


Q ss_pred             H
Q 028390          187 K  187 (209)
Q Consensus       187 ~  187 (209)
                      .
T Consensus        87 l   87 (100)
T 3ma5_A           87 K   87 (100)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.26  E-value=5.1e-11  Score=76.37  Aligned_cols=84  Identities=27%  Similarity=0.333  Sum_probs=76.0

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...|..++..|++++|+..|.+++...|..               ..++.++|.++..+|++++|+..+.+++.+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            45677889999999999999999999999986653               347899999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccC
Q 028390          139 EPLNVKALYRRSQAHLKTS  157 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~  157 (209)
                      +|.+..+++.+|.++..+|
T Consensus        73 ~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999988764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.26  E-value=1.6e-10  Score=90.62  Aligned_cols=125  Identities=14%  Similarity=-0.026  Sum_probs=95.2

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh---hhC
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL---ELE  139 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~~  139 (209)
                      +...|..+...|++++|+..|.+++...+.....         .....+++++|.+|..+|+|++|+..+.+++   +..
T Consensus       118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~  188 (293)
T 2qfc_A          118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL  188 (293)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence            4456666677777777777777777665433221         1135689999999999999999999999999   445


Q ss_pred             CCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHHHHHH
Q 028390          140 PLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDPN------NRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       140 p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~------~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      |++    ..+++++|.+|..+|++++|+.++++++++.+.      -..+...+..+...+++..+.
T Consensus       189 ~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            553    268999999999999999999999999988542      156777788887777665544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.24  E-value=6e-11  Score=84.90  Aligned_cols=95  Identities=14%  Similarity=0.111  Sum_probs=85.5

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh------------------CCCchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLEL------------------EPLNVKALYRRSQAHLKTSELEKAEADIKRA  169 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  169 (209)
                      .+..+.++|..++..|+|++|+..|.+++.+                  +|.+..+++++|.||..+|++++|+.++.++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3557899999999999999999999999999                  7888899999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028390          170 LTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGT  203 (209)
Q Consensus       170 ~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  203 (209)
                      ++++|++..+...+..+...++.+.+... .|.+
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~-~~~~  122 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEE-DLKL  122 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHH-HHHH
Confidence            99999999999999999988888776543 4443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.24  E-value=1.4e-10  Score=94.42  Aligned_cols=125  Identities=14%  Similarity=0.076  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ...+..+...|..++..|++++|+..|.+++...+.++           .....++.++|.++..+|++++|+..+.+++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-----------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-----------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45577788999999999999999999999999855532           2345689999999999999999999999999


Q ss_pred             hh------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHH
Q 028390          137 EL------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       137 ~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l------~p~~~~~~~~l~~l~~~~~~  192 (209)
                      .+      +|....+++.+|.+|..+|++++|+..+++++.+      .|....+...+..+....+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            88      5777899999999999999999999999999998      45556677788888877777

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.23  E-value=7.2e-11  Score=93.46  Aligned_cols=107  Identities=11%  Similarity=0.068  Sum_probs=81.2

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..+...|++++|+.+|.+|+.+.+....         ......++.++|.+|.. |++++|+..|.+++.+.
T Consensus        76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~  145 (307)
T 2ifu_A           76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT---------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF  145 (307)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC---------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence            445666666666777777777777777776554332         12345678899999988 99999999999999886


Q ss_pred             CCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390          140 PLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  176 (209)
Q Consensus       140 p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~  176 (209)
                      |..      ..++.++|.+|..+|++++|+.+|++++.+.|.+
T Consensus       146 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          146 ENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            543      5678899999999999999999999999886644

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.23  E-value=1.5e-10  Score=90.85  Aligned_cols=107  Identities=18%  Similarity=0.118  Sum_probs=90.9

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...|..++..|+|++|+.+|.+|+.+....+..        ......+++|+|.+|..+|+|++|+..+++++.+
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--------ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            46678899999999999999999999999876654432        1223468999999999999999999999999987


Q ss_pred             CCC------chHHHHHHHHHHhccCCHHHH-HHHHHHHHhcC
Q 028390          139 EPL------NVKALYRRSQAHLKTSELEKA-EADIKRALTID  173 (209)
Q Consensus       139 ~p~------~~~~~~~~a~~~~~~~~~~~A-~~~~~~a~~l~  173 (209)
                      .+.      ...+++++|.+|..+|++++| ..++++++.+.
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            543      277899999999999999999 88899998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.23  E-value=2.9e-10  Score=88.57  Aligned_cols=139  Identities=19%  Similarity=0.130  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc--CCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHH
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH--HSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK  134 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  134 (209)
                      ...+..+...|..++..|++++|+..|.+++.+....  ..         .+....++.++|.++...|++++|+..+.+
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  178 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD---------HPDVAKQLNNLALLCQNQGKYEEVEYYYQR  178 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3456678889999999999999999999999986332  11         023467899999999999999999999999


Q ss_pred             Hhhh--------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc----------------------------------
Q 028390          135 VLEL--------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI----------------------------------  172 (209)
Q Consensus       135 al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l----------------------------------  172 (209)
                      ++.+        +|....+++.+|.++..+|++++|+..+++++++                                  
T Consensus       179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (311)
T 3nf1_A          179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT  258 (311)
T ss_dssp             HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence            9998        6777889999999999999999999999999975                                  


Q ss_pred             ---------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          173 ---------------DPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       173 ---------------~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                                     +|.+..+...+..+....++..+... .|.+.+
T Consensus       259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al  305 (311)
T 3nf1_A          259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET-LEEAAM  305 (311)
T ss_dssp             CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Confidence                           35556777778888877777765533 455443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.23  E-value=9.1e-11  Score=94.28  Aligned_cols=99  Identities=12%  Similarity=0.039  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+..+...|..++..|+|++|+..|.+++.+.|..               ..+++++|.++..+|++++|+..+.++++
T Consensus       194 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~  258 (336)
T 1p5q_A          194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN---------------EKGLSRRGEAHLAVNDFELARADFQKVLQ  258 (336)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            346788999999999999999999999999997664               35899999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHH-HHHHHHHHh
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKA-EADIKRALT  171 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A-~~~~~~a~~  171 (209)
                      ++|++..+++.++.++..+|++++| ...|++++.
T Consensus       259 l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          259 LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999 456666654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.22  E-value=2.2e-11  Score=79.80  Aligned_cols=68  Identities=19%  Similarity=0.291  Sum_probs=36.0

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028390          113 LNNAACKLKLEDYSETSSLCTKVLELEPLNVK-ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK  180 (209)
Q Consensus       113 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  180 (209)
                      .++|.+++..|++++|+..+.+++..+|.+.. +++.+|.++..+|++++|+..|+++++++|++..+.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            34455555555555555555555555555555 555555555555555555555555555555554444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.22  E-value=2.3e-10  Score=78.06  Aligned_cols=96  Identities=15%  Similarity=0.157  Sum_probs=86.5

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      ....+.++|.++...|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..++++++++|.+..+...+..+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            46689999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 028390          188 DKQREYAKYQAEIFGTM  204 (209)
Q Consensus       188 ~~~~~~~~~~~~~~~~~  204 (209)
                      ...++..+... .|.+.
T Consensus        95 ~~~~~~~~A~~-~~~~~  110 (133)
T 2lni_A           95 EAMKDYTKAMD-VYQKA  110 (133)
T ss_dssp             HHTTCHHHHHH-HHHHH
T ss_pred             HHHhhHHHHHH-HHHHH
Confidence            88877665533 44443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.22  E-value=2.9e-10  Score=75.75  Aligned_cols=95  Identities=13%  Similarity=0.119  Sum_probs=85.5

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      ...+..+|.++...|++++|+..+.+++..+|.++.+++.+|.++..+|++++|+..+++++.++|+++.+...+..+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhh
Q 028390          189 KQREYAKYQAEIFGTM  204 (209)
Q Consensus       189 ~~~~~~~~~~~~~~~~  204 (209)
                      ..++..+... .|.+.
T Consensus        84 ~~~~~~~A~~-~~~~~   98 (118)
T 1elw_A           84 FLNRFEEAKR-TYEEG   98 (118)
T ss_dssp             HTTCHHHHHH-HHHHH
T ss_pred             HHhhHHHHHH-HHHHH
Confidence            8777665533 44443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.22  E-value=1.3e-10  Score=75.96  Aligned_cols=63  Identities=13%  Similarity=0.090  Sum_probs=54.6

Q ss_pred             HHHH-HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390          107 LRLS-CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  177 (209)
Q Consensus       107 ~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~  177 (209)
                      .... ++.++|.++..+|++++|+..+.+++.++|++..++++        +.+.+|...|+++...+|+++
T Consensus        32 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           32 VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence            3456 89999999999999999999999999999999988755        667888888888888877653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.22  E-value=8.8e-11  Score=77.68  Aligned_cols=94  Identities=14%  Similarity=0.111  Sum_probs=84.6

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYMELKD  188 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~l~~  188 (209)
                      ++..+|.++...|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..++++++++|.  +..+...+..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~   87 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR   87 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999  9999999999988


Q ss_pred             HH-HHHHHHHHHHHHhhh
Q 028390          189 KQ-REYAKYQAEIFGTML  205 (209)
Q Consensus       189 ~~-~~~~~~~~~~~~~~~  205 (209)
                      .+ ++..+.. ..+.+..
T Consensus        88 ~~~~~~~~A~-~~~~~~~  104 (112)
T 2kck_A           88 YIEGKEVEAE-IAEARAK  104 (112)
T ss_dssp             TCSSCSHHHH-HHHHHHG
T ss_pred             HHhCCHHHHH-HHHHHHh
Confidence            77 7666543 3444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.22  E-value=3.7e-10  Score=91.19  Aligned_cols=130  Identities=15%  Similarity=0.053  Sum_probs=107.8

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+..+...|..++..|++++|+..|.+++.+.+....         ......++.++|.++..+|++++|+..+.+++.
T Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  255 (406)
T 3sf4_A          185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLL  255 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            34567888999999999999999999999999887554         134566899999999999999999999999998


Q ss_pred             hCCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHHHHH
Q 028390          138 LEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       138 ~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~l~~~~~~~~~~  196 (209)
                      +.|..      ..+++.+|.++..+|++++|+..+++++.+.+..      ..+...+..+....++..+.
T Consensus       256 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            87655      7789999999999999999999999999885543      55666777777766665544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.20  E-value=2.3e-10  Score=90.51  Aligned_cols=119  Identities=11%  Similarity=0.006  Sum_probs=74.8

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP  140 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  140 (209)
                      ..+...|..+...|++++|+..|.+++.+.|.++.              .+|.++|.++...|++++|+..+.++++.+|
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p  165 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFARRAEGIKSGRMIFKKAREDAR  165 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            45667788888888899999999998887554331              1466666666666666666666666666666


Q ss_pred             CchHHHHHHHHHHh-ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 028390          141 LNVKALYRRSQAHL-KTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  193 (209)
Q Consensus       141 ~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~  193 (209)
                      .+..++...+.... .+|++++|...|+++++++|+++.++..+..+....+..
T Consensus       166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~  219 (308)
T 2ond_A          166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED  219 (308)
T ss_dssp             CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence            66555554444432 246666666666666666666666665555555444333

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.20  E-value=3e-10  Score=83.42  Aligned_cols=129  Identities=10%  Similarity=0.097  Sum_probs=103.1

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...|..++..|++++|+..|.+++.+......         ......++.++|.++..+|++++|+..+.+++.+
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4667889999999999999999999999998765443         2445678999999999999999999999999988


Q ss_pred             ---CC----CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--CCHH----HHHHHHHHHHHHHHHHHH
Q 028390          139 ---EP----LNVKALYRRSQAHLKTSELEKAEADIKRALTIDP--NNRV----VKLVYMELKDKQREYAKY  196 (209)
Q Consensus       139 ---~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p--~~~~----~~~~l~~l~~~~~~~~~~  196 (209)
                         .+    ....+++++|.++..+|++++|+..+++++.+.+  .+..    +...+..+....++..+.
T Consensus        96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  166 (203)
T 3gw4_A           96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA  166 (203)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence               33    2356799999999999999999999999997743  2322    235566666655555443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.20  E-value=4.8e-10  Score=78.64  Aligned_cols=108  Identities=16%  Similarity=0.126  Sum_probs=92.5

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...|..++..|++++|+.+|.+++.+.+....         ......++.++|.++..+|++++|+..+.+++.+
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3567888999999999999999999999999876543         2345678999999999999999999999999977


Q ss_pred             CC------CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390          139 EP------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN  175 (209)
Q Consensus       139 ~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~  175 (209)
                      .+      ....+++.+|.++..+|++++|...+++++++...
T Consensus       119 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          119 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            32      22567899999999999999999999999987543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.19  E-value=2.4e-10  Score=89.46  Aligned_cols=122  Identities=15%  Similarity=0.103  Sum_probs=102.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-  138 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-  138 (209)
                      +..+...|..++..|++++|+..|.+++...|.++           .....++..+|.++...|++++|+..+.+++.+ 
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   73 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   73 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            45677899999999999999999999999855432           234568999999999999999999999999987 


Q ss_pred             -----CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHH
Q 028390          139 -----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQRE  192 (209)
Q Consensus       139 -----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~l~~~~~~  192 (209)
                           .|....+++.+|.++..+|++++|+..+++++.+.|..      ..+...+..+....+.
T Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence                 45567899999999999999999999999999986543      2366667777666666

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.18  E-value=3.1e-10  Score=77.50  Aligned_cols=93  Identities=24%  Similarity=0.206  Sum_probs=82.9

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCch---HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNV---KALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVYM  184 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~  184 (209)
                      .++++|.+++..|+|++|+..+.+++..+|++.   .+++.+|.++..+|++++|+..|++++..+|++   +.+...+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            478899999999999999999999999999988   899999999999999999999999999999999   88899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 028390          185 ELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~  204 (209)
                      .+...+++..+.. ..|.+.
T Consensus        84 ~~~~~~g~~~~A~-~~~~~~  102 (129)
T 2xev_A           84 LSQYGEGKNTEAQ-QTLQQV  102 (129)
T ss_dssp             HHHHHTTCHHHHH-HHHHHH
T ss_pred             HHHHHcCCHHHHH-HHHHHH
Confidence            9988877766553 345444

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.16  E-value=9.4e-10  Score=74.46  Aligned_cols=98  Identities=18%  Similarity=0.178  Sum_probs=87.0

Q ss_pred             HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028390          106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  185 (209)
Q Consensus       106 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  185 (209)
                      +.....+..+|.++...|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..+++++.++|+++.+...+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   88 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence            44566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 028390          186 LKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~  204 (209)
                      +....++..+... .|.+.
T Consensus        89 ~~~~~~~~~~A~~-~~~~~  106 (131)
T 2vyi_A           89 ALSSLNKHVEAVA-YYKKA  106 (131)
T ss_dssp             HHHHTTCHHHHHH-HHHHH
T ss_pred             HHHHhCCHHHHHH-HHHHH
Confidence            8888777665533 44443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.16  E-value=2.3e-10  Score=92.40  Aligned_cols=122  Identities=15%  Similarity=0.103  Sum_probs=103.2

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-  138 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-  138 (209)
                      +..+...|..++..|++++|+..|.+++...|.++           .....++..+|.++...|++++|+..+.+++.+ 
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   77 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   77 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            55677899999999999999999999999855432           234668999999999999999999999999887 


Q ss_pred             -----CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHH
Q 028390          139 -----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQRE  192 (209)
Q Consensus       139 -----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~l~~~~~~  192 (209)
                           .|....+++.+|.++..+|++++|+..+.+++.+.|..      ..+...+..+....+.
T Consensus        78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence                 45557899999999999999999999999999987643      3466677777776666

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.16  E-value=8.4e-10  Score=86.34  Aligned_cols=138  Identities=14%  Similarity=0.048  Sum_probs=111.8

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+..+...|..++..|++++|+..|.+++.+.+....         ......++.++|.++...|++++|+..+.+++.
T Consensus       181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  251 (338)
T 3ro2_A          181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLL  251 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34567888999999999999999999999998876543         234456899999999999999999999999998


Q ss_pred             hCCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          138 LEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       138 ~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                      +.+..      ..+++.+|.++..+|++++|...+++++.+.|..      ..+...+..+....++..+... .|.+.+
T Consensus       252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a~  330 (338)
T 3ro2_A          252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH-FAEKHL  330 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHH
T ss_pred             HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH-HHHHHH
Confidence            86654      7789999999999999999999999999886532      4466677777777777665533 555443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.16  E-value=7.1e-10  Score=78.64  Aligned_cols=96  Identities=21%  Similarity=0.158  Sum_probs=86.3

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      ....+.++|.+++..|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..+++++.++|.++.+...+..+.
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 028390          188 DKQREYAKYQAEIFGTM  204 (209)
Q Consensus       188 ~~~~~~~~~~~~~~~~~  204 (209)
                      ..+++..+... .|.+.
T Consensus        92 ~~~~~~~~A~~-~~~~a  107 (166)
T 1a17_A           92 MALGKFRAALR-DYETV  107 (166)
T ss_dssp             HHTTCHHHHHH-HHHHH
T ss_pred             HHhccHHHHHH-HHHHH
Confidence            88777665533 44444

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.14  E-value=1.6e-09  Score=83.59  Aligned_cols=108  Identities=13%  Similarity=0.067  Sum_probs=55.0

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh----hcCHHHHHHHHHHHh
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLCTKVL  136 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al  136 (209)
                      ..+...|..++..|++++|+..|.+++..  .+               ..++.++|.++..    .+++++|+..+.+++
T Consensus         7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~   69 (273)
T 1ouv_A            7 KELVGLGAKSYKEKDFTQAKKYFEKACDL--KE---------------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC   69 (273)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TC---------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC---------------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence            34455666666666666666666666651  11               1234555555555    555555555555555


Q ss_pred             hhCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          137 ELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       137 ~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      +.+  ++.+++.+|.+|..    .+++++|+..|+++++++  ++.+...+..+...
T Consensus        70 ~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  122 (273)
T 1ouv_A           70 DLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHD  122 (273)
T ss_dssp             HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHc
Confidence            443  44455555555555    555555555555554442  44444444444433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=1.1e-09  Score=76.12  Aligned_cols=95  Identities=17%  Similarity=0.154  Sum_probs=85.4

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  185 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  185 (209)
                      ...+..+|.+++..|+|++|+..+.+++..+|++   ..+++.+|.++..+|++++|+..+++++.++|++..+...+..
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            4578999999999999999999999999999998   8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 028390          186 LKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~  204 (209)
                      +...+++..+... .|.+.
T Consensus       108 ~~~~~~~~~~A~~-~~~~a  125 (148)
T 2dba_A          108 ALEKLGRLDQAVL-DLQRC  125 (148)
T ss_dssp             HHHHHTCHHHHHH-HHHHH
T ss_pred             HHHHcCCHHHHHH-HHHHH
Confidence            9888877766533 44443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.12  E-value=1.6e-09  Score=72.67  Aligned_cols=95  Identities=27%  Similarity=0.340  Sum_probs=84.7

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      ..++..+|.++...|++++|+..+.+++..+|.+..+++.+|.++...|++++|+..+++++.++|.+......+..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHhh
Q 028390          189 KQREYAKYQAEIFGTM  204 (209)
Q Consensus       189 ~~~~~~~~~~~~~~~~  204 (209)
                      ..+...+.. ..|.++
T Consensus        89 ~~~~~~~A~-~~~~~~  103 (125)
T 1na0_A           89 KQGDYDEAI-EYYQKA  103 (125)
T ss_dssp             HTTCHHHHH-HHHHHH
T ss_pred             HhcCHHHHH-HHHHHH
Confidence            777665543 344444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.12  E-value=6e-10  Score=88.03  Aligned_cols=112  Identities=13%  Similarity=0.156  Sum_probs=94.8

Q ss_pred             HHHHHHHhHHHH-------HcCCH-------HHHHHHHHHHHH-HHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcC
Q 028390           60 CERKKHDGNLLF-------RAGKY-------WRASKKYEKAAK-IIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED  124 (209)
Q Consensus        60 a~~~~~~g~~~~-------~~~~~-------~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  124 (209)
                      +..+...|..+.       ..|++       ++|+..|.+|+. +.|..               ..+|.++|.++...|+
T Consensus        50 ~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~---------------~~~~~~~~~~~~~~~~  114 (308)
T 2ond_A           50 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---------------MLLYFAYADYEESRMK  114 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC---------------HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHhcCC
Confidence            444666666655       35775       999999999999 55543               3479999999999999


Q ss_pred             HHHHHHHHHHHhhhCCCchH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          125 YSETSSLCTKVLELEPLNVK-ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       125 ~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      +++|+..|++++.++|.+.. +|+.+|.++...|++++|...|+++++++|.+..+......+
T Consensus       115 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  177 (308)
T 2ond_A          115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM  177 (308)
T ss_dssp             HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            99999999999999999987 999999999999999999999999999999887766544444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.12  E-value=6.3e-10  Score=78.78  Aligned_cols=102  Identities=17%  Similarity=0.178  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc---CHHHHHHHHHHHhhhC-C-CchHHHHHHH
Q 028390           76 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE---DYSETSSLCTKVLELE-P-LNVKALYRRS  150 (209)
Q Consensus        76 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~~a  150 (209)
                      ...+...|.+.+...+  .+             ..+.++.|+|+.+.+   +..+++..++.+++.+ | .+.+++|.+|
T Consensus        14 l~~~~~~y~~e~~~~~--~~-------------~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LA   78 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS--VS-------------KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA   78 (152)
T ss_dssp             HHHHHHHHHHHHHTTC--CC-------------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCC--Cc-------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence            4556677777765322  11             457899999999988   7779999999999998 7 5799999999


Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          151 QAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       151 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      .+++++++|++|..+++++++++|+|..+......+.+++.+
T Consensus        79 v~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A           79 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  120 (152)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888888776643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.11  E-value=7.1e-10  Score=86.80  Aligned_cols=90  Identities=19%  Similarity=0.186  Sum_probs=83.8

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      ...+.++|.+++..|+|++|+..+.+++..+|++..+++++|.+|..+|++++|+.+++++++++|++..+...+..+..
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHH
Q 028390          189 KQREYAKYQA  198 (209)
Q Consensus       189 ~~~~~~~~~~  198 (209)
                      .+++..+...
T Consensus        84 ~~g~~~~A~~   93 (281)
T 2c2l_A           84 EMESYDEAIA   93 (281)
T ss_dssp             HTTCHHHHHH
T ss_pred             HcCCHHHHHH
Confidence            8877766543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.11  E-value=4.5e-10  Score=93.08  Aligned_cols=121  Identities=14%  Similarity=0.085  Sum_probs=95.7

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh--cCHHHHHHHHHHHhh
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--EDYSETSSLCTKVLE  137 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~  137 (209)
                      +..+.+.|..++..|++++|+.+|.+++.+.+.......       .....++.++|.++...  ++|++|+..|++++.
T Consensus        94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~  166 (472)
T 4g1t_A           94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR-------IESPELDCEEGWTRLKCGGNQNERAKVCFEKALE  166 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC-------CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc-------hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence            445678899999999999999999999998776432110       01245678888777765  469999999999999


Q ss_pred             hCCCchHHHHHHHHHHhc---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLK---TSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      ++|+++.+++.+|.++..   .++.++|+..|+++++++|++..+...+....
T Consensus       167 ~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~  219 (472)
T 4g1t_A          167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL  219 (472)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence            999999999999988654   46678899999999999999988877766543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.11  E-value=2.4e-09  Score=78.93  Aligned_cols=96  Identities=11%  Similarity=-0.054  Sum_probs=86.0

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCch----------------HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV----------------KALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      ....+.++|.+++..|+|++|+..+.+++.+.|.++                .+++++|.++..+|++++|+.++++++.
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  116 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK  116 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999887                8999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          172 IDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       172 l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      ++|++..+...+..+...++++.+... .|.+.
T Consensus       117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~-~~~~a  148 (198)
T 2fbn_A          117 IDKNNVKALYKLGVANMYFGFLEEAKE-NLYKA  148 (198)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHH
T ss_pred             hCcccHHHHHHHHHHHHHcccHHHHHH-HHHHH
Confidence            999999999999999988887766533 44443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.10  E-value=2.3e-09  Score=89.01  Aligned_cols=121  Identities=9%  Similarity=0.048  Sum_probs=95.9

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-  138 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-  138 (209)
                      +....+.+......|+|++|+..|.+++.+........       .+..+..++|+|.+|..+|+|++|+..+.+++.+ 
T Consensus       298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~  370 (433)
T 3qww_A          298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY  370 (433)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence            44455556666667899999999999999865422111       1345678999999999999999999999999965 


Q ss_pred             ----CCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHH
Q 028390          139 ----EPLN---VKALYRRSQAHLKTSELEKAEADIKRALTI-----DPNNRVVKLVYMELK  187 (209)
Q Consensus       139 ----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~~l~~l~  187 (209)
                          .|++   ...++++|.+|..+|++++|+..|++|+++     -|+++.+......+.
T Consensus       371 ~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          371 SKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence                4554   567999999999999999999999999986     588888877555543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.10  E-value=8.1e-10  Score=89.86  Aligned_cols=131  Identities=16%  Similarity=0.106  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHhHHHHHcCC-----------------HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHH
Q 028390           57 IEACERKKHDGNLLFRAGK-----------------YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK  119 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~-----------------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  119 (209)
                      ...+..+...|..+...|+                 ++.|+..|.+++.+.+....         ......++.++|.++
T Consensus       163 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~  233 (411)
T 4a1s_A          163 LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD---------RGAQGRACGNLGNTY  233 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHH
Confidence            4456678889999999999                 99999999999988765433         134566789999999


Q ss_pred             HhhcCHHHHHHHHHHHhhhCCCchH------HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHH
Q 028390          120 LKLEDYSETSSLCTKVLELEPLNVK------ALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELK  187 (209)
Q Consensus       120 ~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~l~  187 (209)
                      ..+|++++|+..+.+++.+.+....      +++.+|.+|..+|++++|+..+++++.+.|..      ..+...+..+.
T Consensus       234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  313 (411)
T 4a1s_A          234 YLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY  313 (411)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9999999999999999988765433      88899999999999999999999998887643      45556666666


Q ss_pred             HHHHHHHHH
Q 028390          188 DKQREYAKY  196 (209)
Q Consensus       188 ~~~~~~~~~  196 (209)
                      ...++..+.
T Consensus       314 ~~~g~~~~A  322 (411)
T 4a1s_A          314 TLLHEFNTA  322 (411)
T ss_dssp             HHTTCHHHH
T ss_pred             HHcCCHHHH
Confidence            555554443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.09  E-value=8e-11  Score=94.72  Aligned_cols=103  Identities=10%  Similarity=-0.002  Sum_probs=56.7

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .+...|..++..|+|++|+..|.+++.+.|..               ..+|+++|.+|..+|+|++|+.++.+++.++|+
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~  296 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN---------------PKALFRRGKAKAELGQMDSARDDFRKAQKYAPD  296 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            67899999999999999999999999987653               458999999999999999999999999999999


Q ss_pred             chHHHHHHHHH-HhccCCHHHHHHHHHHHHhcCCCCHHH
Q 028390          142 NVKALYRRSQA-HLKTSELEKAEADIKRALTIDPNNRVV  179 (209)
Q Consensus       142 ~~~~~~~~a~~-~~~~~~~~~A~~~~~~a~~l~p~~~~~  179 (209)
                      +..++..++.+ ....+..+.+...|++++...|+++..
T Consensus       297 ~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          297 DKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             ---------------------------------------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence            99999999988 445667888999999999999987654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.08  E-value=9.6e-10  Score=74.52  Aligned_cols=95  Identities=13%  Similarity=0.120  Sum_probs=83.1

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-------HHHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-------RVVKL  181 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~-------~~~~~  181 (209)
                      ...+..+|.++...|++++|+..+.+++..+|.++.+++.+|.++...|++++|+..+++++.+.|.+       ..+..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999998877       78888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 028390          182 VYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       182 ~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      .+..+....+...+.. ..|.+.
T Consensus        84 ~la~~~~~~~~~~~A~-~~~~~~  105 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAI-HFYNKS  105 (131)
T ss_dssp             HHHHHHHHTTCHHHHH-HHHHHH
T ss_pred             HHHHHHHHhccHHHHH-HHHHHH
Confidence            8888887777666543 244443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.08  E-value=2.5e-09  Score=91.83  Aligned_cols=116  Identities=11%  Similarity=0.008  Sum_probs=106.0

Q ss_pred             HHHHHHHhHHHHHcCC----------HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc--CHHH
Q 028390           60 CERKKHDGNLLFRAGK----------YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE--DYSE  127 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~----------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~  127 (209)
                      ...+..+|..+...|+          +++|+..|.+++...|...               .+|+.++.+...++  +|++
T Consensus        63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y---------------~aW~hR~w~l~~l~~~~~~~  127 (567)
T 1dce_A           63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY---------------GTWHHRCWLLSRLPEPNWAR  127 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcccccHHH
Confidence            4557778888887777          9999999999999877654               48999999999999  7799


Q ss_pred             HHHHHHHHhhhCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          128 TSSLCTKVLELEPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       128 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      ++..++++++++|.|..+|..++.++..+| .+++++.++.++++.+|.|..++.....+...+
T Consensus       128 el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            999999999999999999999999999999 999999999999999999999999999998775

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.06  E-value=1.6e-09  Score=72.11  Aligned_cols=83  Identities=18%  Similarity=0.093  Sum_probs=73.1

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhhC-------CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLELE-------PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLV  182 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~  182 (209)
                      .-++.+|..++..++|..|+..+..|++..       +....++..+|.|++++|+++.|+..++++++++|+++.+...
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            347899999999999999999999999863       3568889999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHH
Q 028390          183 YMELKDKQRE  192 (209)
Q Consensus       183 l~~l~~~~~~  192 (209)
                      +..+...+..
T Consensus        86 ~~~~~~~~~~   95 (104)
T 2v5f_A           86 LKYFEYIMAK   95 (104)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8766655443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.05  E-value=1e-10  Score=98.44  Aligned_cols=102  Identities=17%  Similarity=0.184  Sum_probs=88.2

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..++..|++++|+..|.+|+++.|..               ..++.++|.+|..+|++++|+..+.++++++
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------------IKGYYRRAASNMALGKFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            5678899999999999999999999999986654               3479999999999999999999999999999


Q ss_pred             CCchHHHHHHHHH--HhccCCHHHHHHHHH-----------HHHhcCCCC
Q 028390          140 PLNVKALYRRSQA--HLKTSELEKAEADIK-----------RALTIDPNN  176 (209)
Q Consensus       140 p~~~~~~~~~a~~--~~~~~~~~~A~~~~~-----------~a~~l~p~~  176 (209)
                      |++..++..++.+  +...|++++|+..++           +++.++|+.
T Consensus       105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999998  999999999999999           888887753

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.05  E-value=2.6e-09  Score=83.49  Aligned_cols=110  Identities=12%  Similarity=0.006  Sum_probs=92.2

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC--
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE--  139 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--  139 (209)
                      ..+..|..+++.++|++|+..|..++..-    .         ..+...+++++|.++..+|++++|+..|++++...  
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~----d---------~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~  203 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP----D---------KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG  203 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCS----C---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccC----C---------cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence            56788899999999999999998765531    1         01124579999999999999999999999998654  


Q ss_pred             CC-chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028390          140 PL-NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  185 (209)
Q Consensus       140 p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  185 (209)
                      |. ...+++++|.|+..+|+.++|...|++++..+|+ +.+...|..
T Consensus       204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            55 6789999999999999999999999999999999 888777653

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.03  E-value=4.2e-09  Score=70.11  Aligned_cols=83  Identities=18%  Similarity=0.139  Sum_probs=71.3

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..++..|+|..|+..|..|+...+......        .....++.++|.|++++|+++.|+..+.+++.++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~--------~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCc--------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            45678999999999999999999999999876542110        1246789999999999999999999999999999


Q ss_pred             CCchHHHHHHH
Q 028390          140 PLNVKALYRRS  150 (209)
Q Consensus       140 p~~~~~~~~~a  150 (209)
                      |++..+..+++
T Consensus        77 P~~~~~~~n~~   87 (104)
T 2v5f_A           77 PEHQRANGNLK   87 (104)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHhhHH
Confidence            99999888876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.03  E-value=6e-09  Score=89.43  Aligned_cols=136  Identities=9%  Similarity=-0.038  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHcCCH-HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcC--------
Q 028390           54 HEKIEACERKKHDGNLLFRAGKY-WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED--------  124 (209)
Q Consensus        54 ~~~~~~a~~~~~~g~~~~~~~~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------  124 (209)
                      ..+.+...............|++ ++|+..|.+++.+.|...               .+|+.++.+...+++        
T Consensus        22 ~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~---------------taW~~R~~~l~~l~~~~~~~~~~   86 (567)
T 1dce_A           22 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFA---------------TLWNCRREVLQHLETEKSPEESA   86 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHhcccccchhhhh
Confidence            34444444444555555666665 577999999999977653               489999999999998        


Q ss_pred             --HHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028390          125 --YSETSSLCTKVLELEPLNVKALYRRSQAHLKTS--ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEI  200 (209)
Q Consensus       125 --~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~  200 (209)
                        +++++..+++++..+|.+..+|+.|+.++..++  ++++|+..+.++++++|.|..++.....+...+....+.+-.-
T Consensus        87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~  166 (567)
T 1dce_A           87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence              999999999999999999999999999999999  7899999999999999999999999998887776222333434


Q ss_pred             HHhh
Q 028390          201 FGTM  204 (209)
Q Consensus       201 ~~~~  204 (209)
                      +.++
T Consensus       167 ~~~~  170 (567)
T 1dce_A          167 TDSL  170 (567)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            4444

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.02  E-value=1e-08  Score=85.10  Aligned_cols=123  Identities=11%  Similarity=0.019  Sum_probs=97.2

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-  138 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-  138 (209)
                      +.........+..+|+|++|+..|.+++..........       ....+..+.|+|.+|..+|+|++|+..+.+++.+ 
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~  359 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-------NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY  359 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH
Confidence            44455566677889999999999999997644321111       1345778999999999999999999999999965 


Q ss_pred             ----CCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHH
Q 028390          139 ----EPLN---VKALYRRSQAHLKTSELEKAEADIKRALTI-----DPNNRVVKLVYMELKDK  189 (209)
Q Consensus       139 ----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~~l~~l~~~  189 (209)
                          .|++   ...++++|.+|..+|++++|+..|++|+++     -|+++.+...+..+.+.
T Consensus       360 ~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~  422 (429)
T 3qwp_A          360 RIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEEC  422 (429)
T ss_dssp             HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred             HHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence                4444   567999999999999999999999999976     58888877766555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.01  E-value=6.1e-09  Score=76.27  Aligned_cols=109  Identities=14%  Similarity=0.030  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ...+..+...|..+...|++++|+..|.+++.+....+..        ......++.++|.++..+|++++|+..+.+++
T Consensus        63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED--------PLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4456778899999999999999999999999997755422        12456789999999999999999999999999


Q ss_pred             hhCCC--c----hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390          137 ELEPL--N----VKALYRRSQAHLKTSELEKAEADIKRALTID  173 (209)
Q Consensus       137 ~~~p~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~  173 (209)
                      .+.+.  +    ..++..+|.++..+|++++|...+++++.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            76321  1    3457899999999999999999999999874

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.01  E-value=5.6e-10  Score=75.53  Aligned_cols=83  Identities=13%  Similarity=0.117  Sum_probs=70.5

Q ss_pred             hhcCHHHHHHHHHHHhhh---CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028390          121 KLEDYSETSSLCTKVLEL---EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ  197 (209)
Q Consensus       121 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~  197 (209)
                      .+|++++|+..+.+++++   +|++..+++.+|.+|..+|++++|+..|+++++++|+++.+...+..+...+++..+..
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   69999999999999999999999999999999999999999999999998888877654


Q ss_pred             HHHHHhh
Q 028390          198 AEIFGTM  204 (209)
Q Consensus       198 ~~~~~~~  204 (209)
                      . .|.+.
T Consensus        82 ~-~~~~a   87 (117)
T 3k9i_A           82 E-LLLKI   87 (117)
T ss_dssp             H-HHHHH
T ss_pred             H-HHHHH
Confidence            3 34433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.01  E-value=1.8e-08  Score=77.66  Aligned_cols=108  Identities=13%  Similarity=0.057  Sum_probs=68.3

Q ss_pred             HHHHHHhHHHHH----cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh----hcCHHHHHHHH
Q 028390           61 ERKKHDGNLLFR----AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLC  132 (209)
Q Consensus        61 ~~~~~~g~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~  132 (209)
                      ..+...|..+..    .+++++|+..|.+++....                 ..++.++|.+|..    .+++++|+..+
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-----------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~  101 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-----------------SNGCHLLGNLYYSGQGVSQNTNKALQYY  101 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHhCCCCcccCHHHHHHHH
Confidence            445667777777    7777777777777776521                 2356666666666    66666666666


Q ss_pred             HHHhhhCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          133 TKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       133 ~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      .++++.+  ++.+++.+|.+|..    .+++++|+.+|++++++.  ++.+...+..+...
T Consensus       102 ~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  158 (273)
T 1ouv_A          102 SKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA  158 (273)
T ss_dssp             HHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence            6666653  56666666666666    666666666666666654  34455555554443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.00  E-value=1.2e-08  Score=81.02  Aligned_cols=116  Identities=12%  Similarity=-0.099  Sum_probs=88.4

Q ss_pred             HHHHHHHhHHHHHcC--CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHH----Hhh---cCHHHHHH
Q 028390           60 CERKKHDGNLLFRAG--KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK----LKL---EDYSETSS  130 (209)
Q Consensus        60 a~~~~~~g~~~~~~~--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~---~~~~~A~~  130 (209)
                      ...+..+|..+...+  .+++++..+..++...|....               +|+.++.+.    ..+   +++++++.
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~---------------aW~~R~~iL~~~~~~l~~~~~~~~EL~  131 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ---------------IWNYRQLIIGQIMELNNNDFDPYREFD  131 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH---------------HHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH---------------HHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            455788888888888  999999999999998776543               577777777    555   67777777


Q ss_pred             HHHHHhhhCCCchHHHHHHHHHHhccCCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          131 LCTKVLELEPLNVKALYRRSQAHLKTSELE--KAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       131 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~--~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      .+++++..+|.|..+|+.++.++..++.++  +++..+.++++.+|.|..++.....+...+
T Consensus       132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l  193 (306)
T 3dra_A          132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK  193 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            777777777777777777777777777777  777777777777777777777666665544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.98  E-value=8.3e-09  Score=77.24  Aligned_cols=129  Identities=12%  Similarity=-0.032  Sum_probs=85.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc-----------CCC--ChHHH-----HHHHHHHHHHHhHHHHHHHh
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH-----------HSF--TDDEK-----HQANGLRLSCYLNNAACKLK  121 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~-----------~~~--~~~~~-----~~~~~~~~~~~~~~a~~~~~  121 (209)
                      +..+...|..++..+++++|+..|.+++......           ...  ..++-     .-...-...+++++|.+|..
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~   97 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN   97 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence            4556667777777777777777777776542110           000  00000     00112234567888888877


Q ss_pred             ----hcCHHHHHHHHHHHhhhCC--CchHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          122 ----LEDYSETSSLCTKVLELEP--LNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       122 ----~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                          .+++++|+..+.++++.+|  .++.+++++|.+|..    .+++++|+.+|+++.++ |.++.+...+..+...
T Consensus        98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A           98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence                7788888888888888877  357888888888888    77888888888888877 6666677777776643

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.97  E-value=7.4e-09  Score=77.51  Aligned_cols=78  Identities=12%  Similarity=0.089  Sum_probs=59.2

Q ss_pred             HHHHhHHHHHHHhhc----CHHHHHHHHHHHhhhCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCC--CHH
Q 028390          109 LSCYLNNAACKLKLE----DYSETSSLCTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPN--NRV  178 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~l~p~--~~~  178 (209)
                      ..+++++|.+|.. +    ++++|+..+.++++  +.++.+++++|.+|..    .+++++|+.+|+++.+..|.  ++.
T Consensus        50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~  126 (212)
T 3rjv_A           50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD  126 (212)
T ss_dssp             HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH
T ss_pred             HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH
Confidence            4567788888877 6    78888888888844  5677888888888887    77888888888888887773  477


Q ss_pred             HHHHHHHHHHH
Q 028390          179 VKLVYMELKDK  189 (209)
Q Consensus       179 ~~~~l~~l~~~  189 (209)
                      +...+..+...
T Consensus       127 a~~~Lg~~y~~  137 (212)
T 3rjv_A          127 AQMLLGLIYAS  137 (212)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            77777777655

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.96  E-value=1e-08  Score=81.38  Aligned_cols=116  Identities=10%  Similarity=0.004  Sum_probs=102.4

Q ss_pred             HHHHHhHHH----HHc---CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHH--HHHHHH
Q 028390           62 RKKHDGNLL----FRA---GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS--ETSSLC  132 (209)
Q Consensus        62 ~~~~~g~~~----~~~---~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~A~~~~  132 (209)
                      .+..++..+    ...   +++.+++..+.+++...|...               .+|+.++.+...++.++  +++..+
T Consensus       105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny---------------~aW~~R~~vl~~l~~~~~~~EL~~~  169 (306)
T 3dra_A          105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH---------------HVWSYRKWLVDTFDLHNDAKELSFV  169 (306)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhcccChHHHHHHH
Confidence            355556655    444   789999999999999877654               47999999999999999  999999


Q ss_pred             HHHhhhCCCchHHHHHHHHHHhccCC------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          133 TKVLELEPLNVKALYRRSQAHLKTSE------LEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       133 ~~al~~~p~~~~~~~~~a~~~~~~~~------~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      +++++.+|.|..+|..++.++..++.      +++++.++.+++.++|+|.+++..+..+....+.
T Consensus       170 ~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          170 DKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence            99999999999999999999999998      9999999999999999999999999988776543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.94  E-value=1.1e-09  Score=79.47  Aligned_cols=115  Identities=11%  Similarity=-0.010  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh--------------HHH------HHHHHHHHHHHhHH
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD--------------DEK------HQANGLRLSCYLNN  115 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~--------------~~~------~~~~~~~~~~~~~~  115 (209)
                      .......+...|..+...|++++|+..|.+++...| ++....              +..      -...+....++.++
T Consensus        36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~l  114 (176)
T 2r5s_A           36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL  114 (176)
T ss_dssp             HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHH
Confidence            344567788999999999999999999999887755 221100              000      01122245689999


Q ss_pred             HHHHHhhcCHHHHHHHHHHHhhhCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          116 AACKLKLEDYSETSSLCTKVLELEPLN--VKALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       116 a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      |.++...|++++|+..+.++++.+|++  ..+++.+|.++..+|++++|+..|++++.
T Consensus       115 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          115 AVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            999999999999999999999999986  56999999999999999999999999874

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.94  E-value=6.6e-09  Score=84.60  Aligned_cols=95  Identities=22%  Similarity=0.206  Sum_probs=85.1

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhh----------------hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLE----------------LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                      ...+.++|.+++..|+|++|+..|.+++.                ++|.+..+++++|.+|..+|++++|+.++++++++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            45689999999999999999999999998                78888999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          173 DPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       173 ~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      +|++..+...+..+...++++.+... .|.+.
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~-~l~~A  333 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALA-DLKKA  333 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHH-HHHHH
Confidence            99999999999999988887776533 44443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.94  E-value=4.9e-08  Score=78.52  Aligned_cols=128  Identities=12%  Similarity=0.106  Sum_probs=98.1

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+...|..++..|+++.|+..|.+++.+.+.....         .....++.++|.++...|++++|+..+.+++.+
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            45567788999999999999999999999988765441         233456789999999999999999999999876


Q ss_pred             C--------CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHHH
Q 028390          139 E--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-----RVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       139 ~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~-----~~~~~~l~~l~~~~~~~~~  195 (209)
                      .        |....++..+|.++...|++++|...+++++.+.|..     ..+...+..+........+
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  192 (373)
T 1hz4_A          123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN  192 (373)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            4        3345677889999999999999999999999887752     2344555555555444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.90  E-value=8.1e-08  Score=76.88  Aligned_cols=100  Identities=12%  Similarity=0.018  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcC--HHHHHHHHHHHhhhCCCchHHHHHHHHHH
Q 028390           76 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED--YSETSSLCTKVLELEPLNVKALYRRSQAH  153 (209)
Q Consensus        76 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~a~~~  153 (209)
                      +.+++..+..++...|...               .+|+.++.+...++.  +++++..++++++.+|.|..+|..++.++
T Consensus        90 l~~EL~~~~~~L~~~PKny---------------~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl  154 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSY---------------GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  154 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            7899999999999877654               489999999999994  99999999999999999999999999999


Q ss_pred             hccCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          154 LKTSE-LEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       154 ~~~~~-~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      ..+|. +++++.++.++++.+|.|..++.....+...+
T Consensus       155 ~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          155 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            99999 69999999999999999999999999888776

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.89  E-value=1.1e-08  Score=86.50  Aligned_cols=114  Identities=11%  Similarity=-0.005  Sum_probs=63.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      ...+...|..+...|++++|...|.+++...|..+.              .+|.+.+.++...|++++|+..+.++++..
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~  386 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFARRAEGIKSGRMIFKKAREDA  386 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            344566777778899999999999999987554321              134444444444555555555555555544


Q ss_pred             CCchHHHHHHHHH-HhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQA-HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       140 p~~~~~~~~~a~~-~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      |.....+...+.. +...|++++|...|+++++.+|+++.++..+..+.
T Consensus       387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~  435 (530)
T 2ooe_A          387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  435 (530)
T ss_dssp             TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            4444444433322 22344555555555555555554444444444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.88  E-value=1.1e-08  Score=73.05  Aligned_cols=71  Identities=17%  Similarity=0.209  Sum_probs=66.6

Q ss_pred             hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL----------EKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      +.+.|++|+..+.++++++|+++.+|+++|.++..++++          ++|+..|+++++++|++..++..+..+...+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            567899999999999999999999999999999999876          5999999999999999999999999999877


Q ss_pred             H
Q 028390          191 R  191 (209)
Q Consensus       191 ~  191 (209)
                      .
T Consensus        94 g   94 (158)
T 1zu2_A           94 A   94 (158)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.88  E-value=9.4e-09  Score=67.61  Aligned_cols=80  Identities=13%  Similarity=0.022  Sum_probs=65.9

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..++..|++++|+..|.+++.+.|..+.               +|.++|.+|..+|++++|+..+.+++++.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVG---------------TYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            456789999999999999999999999999777543               79999999999999999999999999987


Q ss_pred             CCc--hHHHHHHHHHHh
Q 028390          140 PLN--VKALYRRSQAHL  154 (209)
Q Consensus       140 p~~--~~~~~~~a~~~~  154 (209)
                      |.+  ..+...+...+.
T Consensus        72 ~~~~~~~~~~~l~~~l~   88 (100)
T 3ma5_A           72 REEGTQKDLSELQDAKL   88 (100)
T ss_dssp             HHHSCHHHHHHHHHHHH
T ss_pred             hcCCchhHHHHHHHHHH
Confidence            654  333333444433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.87  E-value=5.2e-08  Score=78.41  Aligned_cols=120  Identities=13%  Similarity=0.015  Sum_probs=103.7

Q ss_pred             HHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-CHHHHHHHHHHHhhhCCCchHHHHHH
Q 028390           71 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLELEPLNVKALYRR  149 (209)
Q Consensus        71 ~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~  149 (209)
                      ...+..++|+..+.++|.+.|...               .+|+.++.+...++ .+++++..++.++..+|.+..+|+.|
T Consensus        65 ~~~e~se~AL~lt~~~L~~nP~~y---------------taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR  129 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMNPAHY---------------TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR  129 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHhCchhH---------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            344556789999999999977753               47999999999999 59999999999999999999999999


Q ss_pred             HHHHhcc-C-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhh
Q 028390          150 SQAHLKT-S-ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA-------KYQAEIFGTML  205 (209)
Q Consensus       150 a~~~~~~-~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~-------~~~~~~~~~~~  205 (209)
                      +.++..+ + ++++++..+.++++.+|.|..++.....+-..+....       ..+-..+.+++
T Consensus       130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I  194 (349)
T 3q7a_A          130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML  194 (349)
T ss_dssp             HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence            9999998 8 9999999999999999999999999999888877655       24455555554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.87  E-value=3.5e-08  Score=78.97  Aligned_cols=126  Identities=9%  Similarity=-0.067  Sum_probs=102.0

Q ss_pred             HHHhHHHHHcCCHH-HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcC----------HHHHHHHH
Q 028390           64 KHDGNLLFRAGKYW-RASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED----------YSETSSLC  132 (209)
Q Consensus        64 ~~~g~~~~~~~~~~-~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~  132 (209)
                      ...-....+.|.+. +|+..+.++|.+.|...               .+|+.++.+...++.          +++++..+
T Consensus        33 ~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~y---------------taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~   97 (331)
T 3dss_A           33 TQAVFQKRQAGELDESVLELTSQILGANPDFA---------------TLWNCRREVLQHLETEKSPEESAALVKAELGFL   97 (331)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCH---------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence            33333444677776 79999999999877643               478999999988876          78999999


Q ss_pred             HHHhhhCCCchHHHHHHHHHHhccC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          133 TKVLELEPLNVKALYRRSQAHLKTS--ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       133 ~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      +.++..+|.+..+|+.++.++..++  ++++++..+.++++++|.|..++.....+-..+...-+.+-.-+.++
T Consensus        98 ~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~  171 (331)
T 3dss_A           98 ESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL  171 (331)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence            9999999999999999999999999  49999999999999999999999998888776554222333344443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.87  E-value=2.9e-08  Score=64.72  Aligned_cols=71  Identities=23%  Similarity=0.154  Sum_probs=63.6

Q ss_pred             HHHHhHHHHHHHhhcC---HHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 028390          109 LSCYLNNAACKLKLED---YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV  179 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~  179 (209)
                      ..++..+|.+++..++   .++|...+.+++.++|+++.+++.+|.+++..|+|++|+..++++++.+|.++..
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~   79 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR   79 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            4578888888876555   7999999999999999999999999999999999999999999999999985443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.79  E-value=1.6e-08  Score=79.20  Aligned_cols=113  Identities=10%  Similarity=-0.111  Sum_probs=91.6

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC--------------CChHH-----HHHHHHHHHHHHhHHHHHH
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS--------------FTDDE-----KHQANGLRLSCYLNNAACK  119 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~--------------~~~~~-----~~~~~~~~~~~~~~~a~~~  119 (209)
                      ....+...|..+...|++++|+..|.+++...|....              .....     .-...+....+++++|.++
T Consensus       150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l  229 (287)
T 3qou_A          150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQL  229 (287)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            3677889999999999999999999998776542110              00000     0112233456899999999


Q ss_pred             HhhcCHHHHHHHHHHHhhhCCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          120 LKLEDYSETSSLCTKVLELEPLN--VKALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       120 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      ...|++++|+..+.+++..+|++  ..++.+++.++..+|+.++|...|++++.
T Consensus       230 ~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          230 HQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            99999999999999999999999  88999999999999999999999999875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.78  E-value=5.2e-08  Score=78.44  Aligned_cols=132  Identities=10%  Similarity=-0.055  Sum_probs=106.7

Q ss_pred             HHHHHHHHhHHHHHcC-CHHHHHHHHHHHHHHHhhcCC---------------CChHHHHHH------HHHHHHHHhHHH
Q 028390           59 ACERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHS---------------FTDDEKHQA------NGLRLSCYLNNA  116 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~-~~~~A~~~y~~al~~~~~~~~---------------~~~~~~~~~------~~~~~~~~~~~a  116 (209)
                      ....+..+|..+...| .+++++..+..++...|....               ...++..-.      ++-...+|+.++
T Consensus        87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~  166 (349)
T 3q7a_A           87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLH  166 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3677888888888888 599999999999987765321               111221111      222345889999


Q ss_pred             HHHHhhcCHH--------HHHHHHHHHhhhCCCchHHHHHHHHHHhccCC-------HHHHHHHHHHHHhcCCCCHHHHH
Q 028390          117 ACKLKLEDYS--------ETSSLCTKVLELEPLNVKALYRRSQAHLKTSE-------LEKAEADIKRALTIDPNNRVVKL  181 (209)
Q Consensus       117 ~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-------~~~A~~~~~~a~~l~p~~~~~~~  181 (209)
                      .+...++.++        +++..++++++.+|.|..+|..++.++..++.       +++++.++.+++.++|+|..++.
T Consensus       167 wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~  246 (349)
T 3q7a_A          167 WLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWN  246 (349)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            9999999888        99999999999999999999999999999997       79999999999999999999999


Q ss_pred             HHHHHHHHH
Q 028390          182 VYMELKDKQ  190 (209)
Q Consensus       182 ~l~~l~~~~  190 (209)
                      .+..+....
T Consensus       247 Ylr~Ll~~~  255 (349)
T 3q7a_A          247 YLRGFLKHF  255 (349)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            988876643

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.78  E-value=8.1e-08  Score=77.25  Aligned_cols=133  Identities=10%  Similarity=-0.013  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHH
Q 028390           54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT  133 (209)
Q Consensus        54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  133 (209)
                      .+....+......|..++..|+++.|+..+.+++...+....          .....++.++|.++...|++++|+..+.
T Consensus         8 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~   77 (373)
T 1hz4_A            8 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----------YSRIVATSVLGEVLHCKGELTRSLALMQ   77 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch----------hHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            334445667778899999999999999999999997653221          2345678999999999999999999999


Q ss_pred             HHhhhCCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHHHHHHH
Q 028390          134 KVLELEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDP--------NNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       134 ~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p--------~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      +++.+.|..      ..+++.+|.++...|++++|+..+++++.+.+        ....+...+..+.....+..+.
T Consensus        78 ~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  154 (373)
T 1hz4_A           78 QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA  154 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence            999876543      23478899999999999999999999998752        2334555566666655555444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.77  E-value=1.8e-07  Score=79.20  Aligned_cols=113  Identities=17%  Similarity=0.219  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh-------hcCHH-------HHHHHHHHHhh-hCCC
Q 028390           77 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-------LEDYS-------ETSSLCTKVLE-LEPL  141 (209)
Q Consensus        77 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~al~-~~p~  141 (209)
                      ..|+..|.+|+...|..+               .+|.+.|..+..       .|+++       +|+..+++++. ++|+
T Consensus       255 ~~a~~~y~~al~~~p~~~---------------~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~  319 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHP---------------DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK  319 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCH---------------HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred             HHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence            478889999999877654               479999999886       79987       99999999997 8999


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR-VVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                      +..+++.+|.++...|++++|...|++++++.|.++ .++..+..+..+.+..... +..|.+..
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~Al  383 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG-RMIFKKAR  383 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHH-HHHHHHHH
Confidence            999999999999999999999999999999999986 5888888877776665543 55666554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.76  E-value=5.2e-08  Score=65.26  Aligned_cols=71  Identities=14%  Similarity=0.097  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          126 SETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       126 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      +.|+..+.+++..+|++..+++.+|.++...|++++|+..|++++.++|++..+...+..+....++..+.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A   72 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA   72 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999998887766654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.73  E-value=1.1e-07  Score=74.39  Aligned_cols=126  Identities=12%  Similarity=-0.025  Sum_probs=101.8

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      ....+..+...|+|++|...|..++...|.               .. +.+.+|.++++.++|++|+..+..++...++.
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~---------------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~  168 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVAGSE---------------HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF  168 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCTTCH---------------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---------------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence            346788899999999999999887764332               23 68999999999999999999999887764332


Q ss_pred             --hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          143 --VKALYRRSQAHLKTSELEKAEADIKRALTID--PN-NRVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       143 --~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~--p~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                        ..+++.+|.++..+|++++|+..|++++.-.  |. ..++...+..+..++....+. ...|.++.
T Consensus       169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA-~~~l~~a~  235 (282)
T 4f3v_A          169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA-VALLEWLQ  235 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Confidence              4589999999999999999999999998654  65 567888888888888877655 44666654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.69  E-value=2.9e-07  Score=62.91  Aligned_cols=104  Identities=15%  Similarity=0.155  Sum_probs=85.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHH---HHHHHHHHhhhC-C-CchHHHHH
Q 028390           74 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSE---TSSLCTKVLELE-P-LNVKALYR  148 (209)
Q Consensus        74 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~  148 (209)
                      .....+...|...+...+  +.             ..+-++.|+++.+......   +|..++.++.-+ | ...+.+|.
T Consensus        15 ~~l~~~~~~y~~e~~~~~--~s-------------~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~   79 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGS--VS-------------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY   79 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSC--CC-------------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCC--Cc-------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            344566677777765322  22             4578999999998887776   999999999887 5 57889999


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          149 RSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       149 ~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      +|..++++|+|++|..+++.+++.+|+|..+......+.+++.+
T Consensus        80 LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           80 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999888888776643

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.67  E-value=3.3e-07  Score=63.88  Aligned_cols=97  Identities=7%  Similarity=-0.080  Sum_probs=78.6

Q ss_pred             HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh----hcCHHHHHHHHHHHhhhCCC
Q 028390           66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~  141 (209)
                      .|..+...+.++.|+.+|.+|....  +               ..+++++|.+|..    .+++++|+.++.++.+.  .
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g--~---------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g   91 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN--S---------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N   91 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC--C---------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence            6666777778888999999998751  1               3578999999988    88999999999999877  5


Q ss_pred             chHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390          142 NVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVY  183 (209)
Q Consensus       142 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l  183 (209)
                      ++.+.+++|.+|..    .+++++|+.+|+++.+..  ++.+...+
T Consensus        92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l  135 (138)
T 1klx_A           92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGIL  135 (138)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC
T ss_pred             CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence            78899999999999    899999999999998873  44444433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.62  E-value=2.2e-07  Score=78.35  Aligned_cols=108  Identities=8%  Similarity=-0.060  Sum_probs=89.9

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH-SFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ..+..+.+.|..+...|+|++|+.+|.+++.+..... ..+        +..+..++|+|.+|..+|+|++|+..+.+|+
T Consensus       349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H--------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN--------AQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4567788899999999999999999999998865421 111        3457789999999999999999999999999


Q ss_pred             hh-----CCCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390          137 EL-----EPLN---VKALYRRSQAHLKTSELEKAEADIKRALTID  173 (209)
Q Consensus       137 ~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~  173 (209)
                      .+     .|++   .+..-.++.++..++.+++|...|.++.+-.
T Consensus       421 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          421 AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65     5666   4556789999999999999999999987644

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.61  E-value=4.1e-07  Score=76.16  Aligned_cols=78  Identities=17%  Similarity=0.031  Sum_probs=67.8

Q ss_pred             HHHHhHHHHHHHh----hcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCC---CH
Q 028390          109 LSCYLNNAACKLK----LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPN---NR  177 (209)
Q Consensus       109 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~l~p~---~~  177 (209)
                      ..+++++|.+|..    .+++++|+..+.++++.+  ++.+++++|.+|..    .+++++|..+|+++++..|+   ++
T Consensus       363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~  440 (490)
T 2xm6_A          363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTE  440 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCH
Confidence            4578999999998    899999999999998864  68899999999998    89999999999999999854   77


Q ss_pred             HHHHHHHHHHH
Q 028390          178 VVKLVYMELKD  188 (209)
Q Consensus       178 ~~~~~l~~l~~  188 (209)
                      .+...+..+..
T Consensus       441 ~a~~~l~~~~~  451 (490)
T 2xm6_A          441 NRNITEKKLTA  451 (490)
T ss_dssp             HHHHHHTTSCH
T ss_pred             HHHHHHHhcCH
Confidence            88777777654

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=98.53  E-value=1.2e-07  Score=69.34  Aligned_cols=60  Identities=30%  Similarity=0.299  Sum_probs=42.9

Q ss_pred             CCCCCccEEEEEeCccc-ccccCC--cCCCCCCceEEEEEEEcccccCCC---CCCCCHHHHHHHH
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEV--SELVSADSVLHYEVTLIDFTKEKP---FWKMDTHEKIEAC   60 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~--~~~ip~~~~l~~~~~l~~~~~~~~---~~~~~~~~~~~~a   60 (209)
                      ..|++||+..|.|.+++ ||..|.  .+.||+|+++.|+|+|+.+....+   .|.|+.++++..|
T Consensus       114 ~gMk~Ge~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A  179 (180)
T 2f4e_A          114 ASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA  179 (180)
T ss_dssp             TTCCBTCEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCCC---------------
T ss_pred             hCCCCCCEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhc
Confidence            36999999999999999 999986  568999999999999999988776   8899888887655

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.44  E-value=7.8e-06  Score=68.37  Aligned_cols=108  Identities=9%  Similarity=-0.074  Sum_probs=72.6

Q ss_pred             HHHHHHHhHHHHH----cCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh----hcCHHHHHHH
Q 028390           60 CERKKHDGNLLFR----AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSL  131 (209)
Q Consensus        60 a~~~~~~g~~~~~----~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~  131 (209)
                      +......|..++.    .+++++|+..|.+++...  +               ..+++.+|.+|..    .+++++|+..
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~---------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~  101 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--Y---------------TPAEYVLGLRYMNGEGVPQDYAQAVIW  101 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--C---------------HHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            5567778888887    888999999999888641  1               2356667777766    6677777777


Q ss_pred             HHHHhhhCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          132 CTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       132 ~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      +.++.+.  .++.+++.+|.+|..    .+++++|+.+|+++...  +++.+...+..+..
T Consensus       102 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~  158 (490)
T 2xm6_A          102 YKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYF  158 (490)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            7776654  356666667766666    66667777777666553  35556665655554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.44  E-value=2.6e-06  Score=70.92  Aligned_cols=107  Identities=10%  Similarity=-0.039  Sum_probs=72.6

Q ss_pred             HHHHHhHHHHHcC---CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh----cCHHHHHHHHHH
Q 028390           62 RKKHDGNLLFRAG---KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL----EDYSETSSLCTK  134 (209)
Q Consensus        62 ~~~~~g~~~~~~~---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~  134 (209)
                      .+...|..+...|   ++.+|+..|.+++...+..               ...++++|.+|...    +++++|+..|.+
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~---------------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~  242 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT---------------AQRVDSVARVLGDATLGTPDEKTAQALLEK  242 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC---------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH---------------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence            4567888888888   9999999999998864432               22346667666554    567777777777


Q ss_pred             HhhhCCCchHHHHHHHHH-H--hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          135 VLELEPLNVKALYRRSQA-H--LKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       135 al~~~p~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      +.   |.++.+++++|.+ +  ...+++++|+.+|+++.+.  +++.+...+..+..
T Consensus       243 aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          243 IA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             HG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             Hc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            66   6667777777766 3  4566777777777766643  35666666666554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.43  E-value=2.9e-06  Score=66.18  Aligned_cols=87  Identities=11%  Similarity=0.039  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh-----cCHHHHHHHHHHHhhhCCCc-hHHHHHH
Q 028390           76 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-----EDYSETSSLCTKVLELEPLN-VKALYRR  149 (209)
Q Consensus        76 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~~  149 (209)
                      ...|...+.+|++++|..             +...+|..+|..|...     |+.++|..+++++++++|+. ..+++..
T Consensus       179 l~~A~a~lerAleLDP~~-------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~Y  245 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSY-------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITY  245 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTH-------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCc-------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence            466777788888876652             2356899999999996     99999999999999999975 9999999


Q ss_pred             HHHHhcc-CCHHHHHHHHHHHHhcCCC
Q 028390          150 SQAHLKT-SELEKAEADIKRALTIDPN  175 (209)
Q Consensus       150 a~~~~~~-~~~~~A~~~~~~a~~l~p~  175 (209)
                      |..+... ++.+.|...+++++..+|.
T Consensus       246 A~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          246 ADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            9999884 9999999999999998776

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.41  E-value=5.3e-06  Score=67.67  Aligned_cols=120  Identities=17%  Similarity=0.114  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCC------------------ChHHHHH-H------------
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF------------------TDDEKHQ-A------------  104 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~------------------~~~~~~~-~------------  104 (209)
                      .......+...|..++..|+|++|+..|.+++.+.+..+..                  ..+.... .            
T Consensus        51 ~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  130 (434)
T 4b4t_Q           51 RNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR  130 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC
T ss_pred             hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc
Confidence            34445667899999999999999999999999876653210                  0011100 0            


Q ss_pred             HHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390          105 NGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN  175 (209)
Q Consensus       105 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~  175 (209)
                      ..+...++.++|.+|...|+|.+|+..+..++..      .+....++...|.+|..+|++++|...+++++.+.+.
T Consensus       131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            1123557788888888888888888888887754      2334667888888888888888888888888888543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.41  E-value=1.9e-06  Score=70.30  Aligned_cols=102  Identities=11%  Similarity=0.021  Sum_probs=75.0

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +......|..++..|+|.+|+..+.+++.......+         ......++.+++.+|..+|+|++|...+++++...
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD---------KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC---------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc---------chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            345567788888888888888888888887666544         25677889999999999999999999999999876


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRAL  170 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~  170 (209)
                      +.........+..+..+|.+..+...+..+.
T Consensus       206 ~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~  236 (434)
T 4b4t_Q          206 NSIYCPTQTVAELDLMSGILHCEDKDYKTAF  236 (434)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred             hcCCCchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            5443334455666666665555555555544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.40  E-value=1.3e-06  Score=72.23  Aligned_cols=106  Identities=13%  Similarity=0.071  Sum_probs=72.4

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .+...|+.++..|.|++|+.+|.++       +                .|..+|.|+.++|+|++|++.+.++.  +|.
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-------~----------------n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~  178 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-------S----------------NFGRLASTLVHLGEYQAAVDGARKAN--STR  178 (449)
T ss_dssp             -------------CTTTHHHHHHHT-------T----------------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-------h----------------hHHHHHHHHHHhccHHHHHHHHHHcC--Cch
Confidence            6778888888888888888888865       1                27888888888888888888888883  221


Q ss_pred             ---------------------------chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          142 ---------------------------NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       142 ---------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                                                 +++-...+..+|.+.|.+++|+..++.++.+++.+..+...+..+..+-+.
T Consensus       179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p  256 (449)
T 1b89_A          179 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP  256 (449)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH
Confidence                                       112233345789999999999999999999999999999999888765543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.38  E-value=3.9e-06  Score=69.81  Aligned_cols=101  Identities=14%  Similarity=0.032  Sum_probs=62.6

Q ss_pred             HHHhHHHHHc----CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHH-H--HhhcCHHHHHHHHHHHh
Q 028390           64 KHDGNLLFRA----GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC-K--LKLEDYSETSSLCTKVL  136 (209)
Q Consensus        64 ~~~g~~~~~~----~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~al  136 (209)
                      ...|..+...    +++++|+..|.++.   +.++               .+++++|.+ +  ...+++++|+..+.+++
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~---------------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa  278 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYP---------------ASWVSLAQLLYDFPELGDVEQMMKYLDNGR  278 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST---------------HHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH---------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            4455555443    57777887777776   3333               256666666 3  35666667777776666


Q ss_pred             hhCCCchHHHHHHHHHHhccC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          137 ELEPLNVKALYRRSQAHLKTS-----ELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       137 ~~~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      +.+  ++.+++++|.+|. .|     ++++|+.+|+++.   |+++.+...+..+..
T Consensus       279 ~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          279 AAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR  329 (452)
T ss_dssp             HTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred             HCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence            443  5666666666666 44     6666666666666   666666666666554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.38  E-value=6e-06  Score=57.36  Aligned_cols=93  Identities=14%  Similarity=-0.017  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHH
Q 028390           74 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAH  153 (209)
Q Consensus        74 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~  153 (209)
                      +++++|+..|.++.+..  ++.               +.  +|.+|...+.+++|+.++.++.+.  .++.+++++|.+|
T Consensus         9 ~d~~~A~~~~~~aa~~g--~~~---------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y   67 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN--EMF---------------GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFY   67 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTT---------------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC--CHh---------------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence            57899999999999863  222               34  999999999999999999999987  6789999999999


Q ss_pred             hc----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          154 LK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       154 ~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      ..    .+++++|+.+|+++.+.  .++.+...+..+...
T Consensus        68 ~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           68 ENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            99    89999999999999986  678888889888876

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.38  E-value=4.3e-06  Score=77.50  Aligned_cols=108  Identities=13%  Similarity=0.084  Sum_probs=91.4

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC-
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP-  140 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-  140 (209)
                      .+...|+.++..|+|+.|+.+|.+|-                       .|..+|.|+.++|++++|++.+.++....+ 
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence            56679999999999999999999862                       289999999999999999999999855443 


Q ss_pred             ------------------------CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          141 ------------------------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       141 ------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                                              .+++-+..++..|...|.|++|+..++.++.++|.+......+..+..+-+.
T Consensus      1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A         1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH
Confidence                                    1344566778889999999999999999999999999999888887765433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.35  E-value=2.2e-05  Score=55.94  Aligned_cols=118  Identities=9%  Similarity=0.037  Sum_probs=92.5

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF-TDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP  140 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  140 (209)
                      .+++....++..|.|+.|+-.+..++.+...++.. +       ......++..+|..++..++|..|...|.++|++..
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s-------p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k   94 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS-------PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK   94 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc-------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999987665542 2       244667889999999999999999999999986521


Q ss_pred             ---C----------------------chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          141 ---L----------------------NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       141 ---~----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                         .                      ..+..|++|.||.+++++.+|+..++.+.. .-..+.+.-.|++++
T Consensus        95 ~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A           95 ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             CC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             HHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence               1                      126789999999999999999998865422 123566766666654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.34  E-value=1.2e-05  Score=64.82  Aligned_cols=115  Identities=11%  Similarity=-0.028  Sum_probs=85.7

Q ss_pred             HHHHHhHHHHHcCC---HHHHHHHHHHHHHHHhhcCCC-----------------ChHHHHHH------------HHHHH
Q 028390           62 RKKHDGNLLFRAGK---YWRASKKYEKAAKIIEFHHSF-----------------TDDEKHQA------------NGLRL  109 (209)
Q Consensus        62 ~~~~~g~~~~~~~~---~~~A~~~y~~al~~~~~~~~~-----------------~~~~~~~~------------~~~~~  109 (209)
                      .+.-+|..++..+.   +.+|+.+|.+|+++.|.....                 .......+            .+...
T Consensus       198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a  277 (372)
T 3ly7_A          198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS  277 (372)
T ss_dssp             HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH
Confidence            35556666666544   588999999999997763210                 10111111            11223


Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  177 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~  177 (209)
                      .+|..++..++..|++++|+..+++++.++|+ +.++..+|.++...|++++|+..|.+|+.++|..+
T Consensus       278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          278 IIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            34556777788899999999999999999975 67889999999999999999999999999999865

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.31  E-value=1.2e-05  Score=55.05  Aligned_cols=84  Identities=18%  Similarity=0.151  Sum_probs=71.2

Q ss_pred             HHHHhHHHHHHHhhcC---HHHHHHHHHHHhhhCCC-chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 028390          109 LSCYLNNAACKLKLED---YSETSSLCTKVLELEPL-NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  184 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  184 (209)
                      ...-++.|++..+-..   ...++..++..+..+|. ..+.+|.+|..++++|+|+.|..+.+.+++.+|+|..+.....
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            3466777877776554   45789999999988884 5889999999999999999999999999999999999988888


Q ss_pred             HHHHHHHH
Q 028390          185 ELKDKQRE  192 (209)
Q Consensus       185 ~l~~~~~~  192 (209)
                      .|.+++.+
T Consensus       120 ~Ie~ki~k  127 (134)
T 3o48_A          120 MVEDKIQK  127 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            87776654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.31  E-value=1.8e-05  Score=54.86  Aligned_cols=83  Identities=18%  Similarity=0.147  Sum_probs=70.0

Q ss_pred             HHHHhHHHHHHHhhcC---HHHHHHHHHHHhhhCC-CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 028390          109 LSCYLNNAACKLKLED---YSETSSLCTKVLELEP-LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM  184 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  184 (209)
                      ....++.|+++.+-..   ..+++..++..+.-+| ...+.+|.+|..++++|+|++|..+.+.+++.+|+|..+.....
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            3456777788776554   4578999999998888 46889999999999999999999999999999999999988877


Q ss_pred             HHHHHHH
Q 028390          185 ELKDKQR  191 (209)
Q Consensus       185 ~l~~~~~  191 (209)
                      .+.+++.
T Consensus       119 ~Ie~~i~  125 (144)
T 1y8m_A          119 MVEDKIQ  125 (144)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776653

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=98.30  E-value=2.6e-06  Score=61.39  Aligned_cols=56  Identities=16%  Similarity=0.136  Sum_probs=46.9

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEcccccCCCCCCCCHHHHHH
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTKEKPFWKMDTHEKIE   58 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~   58 (209)
                      ..|++||..+|.|.+++ ||+.|.++.||||+++.|+|+|+.+.+.  .+..+.++...
T Consensus        99 ~gMk~Ge~~~~~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~~--~~~~~~~e~~~  155 (167)
T 1jvw_A           99 QLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDG--GKGRTAEEVDE  155 (167)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGG--CCSCBHHHHHH
T ss_pred             cCCCCCCEEEEEECchhhCCCCCCCCCcCCCCeEEEEEEEEEEEcC--CCCCCHHHHHH
Confidence            36999999999999999 9999988899999999999999999753  34455555443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.25  E-value=6.1e-06  Score=65.28  Aligned_cols=100  Identities=13%  Similarity=0.103  Sum_probs=79.4

Q ss_pred             HHHhHHHHHcC--CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh---
Q 028390           64 KHDGNLLFRAG--KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL---  138 (209)
Q Consensus        64 ~~~g~~~~~~~--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---  138 (209)
                      ...|...+..|  ++.+|...|.++....|+...             ..++.|   |++.+|+|++|...++.++..   
T Consensus       180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~-------------~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~  243 (310)
T 3mv2_B          180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKT-------------QLGLLN---LHLQQRNIAEAQGIVELLLSDYYS  243 (310)
T ss_dssp             HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHH-------------HHHHHH---HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCccc-------------HHHHHH---HHHHcCCHHHHHHHHHHHHHhccc
Confidence            34454455445  999999999998775543111             123344   899999999999999988876   


Q ss_pred             -------CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 028390          139 -------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKL  181 (209)
Q Consensus       139 -------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~  181 (209)
                             +|+++.++.+++.+...+|+  +|..++.++.+++|+++-+..
T Consensus       244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence                   58999999999999999998  899999999999999988754

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=98.17  E-value=2.4e-06  Score=58.87  Aligned_cols=43  Identities=30%  Similarity=0.465  Sum_probs=40.3

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEcccc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFT   43 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~   43 (209)
                      ..|++||..+|.|.+++ ||..|.++.|||+++|.|+|+|+.+.
T Consensus        83 ~gm~~Ge~~~v~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           83 ATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             hcCCCCCEEEEEEChHHcCCCCCCCCCcCCCCEEEEEEEEEEec
Confidence            36999999999999999 99999888999999999999999874

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.17  E-value=6.6e-06  Score=53.34  Aligned_cols=68  Identities=13%  Similarity=0.056  Sum_probs=58.8

Q ss_pred             HHHHHHHhHHHHHcCC---HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           60 CERKKHDGNLLFRAGK---YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      +..+...|..++..++   .++|...+.+|+.++|.+.               .++..+|..++..|+|++|+..+++++
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~---------------rA~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE---------------AALSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4456678888876555   7999999999999988765               478999999999999999999999999


Q ss_pred             hhCCCc
Q 028390          137 ELEPLN  142 (209)
Q Consensus       137 ~~~p~~  142 (209)
                      +.+|..
T Consensus        71 ~~~p~~   76 (93)
T 3bee_A           71 DSNDPN   76 (93)
T ss_dssp             TCCCTT
T ss_pred             hhCCCC
Confidence            999984

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=98.17  E-value=2.5e-06  Score=58.00  Aligned_cols=42  Identities=29%  Similarity=0.502  Sum_probs=38.4

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcC-CCCCCceEEEEEEEccc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSE-LVSADSVLHYEVTLIDF   42 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~-~ip~~~~l~~~~~l~~~   42 (209)
                      ..|++||..+|.|.+++ ||+.|.+. .|||++++.|+|+|+.+
T Consensus        75 ~gm~~Ge~~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           75 LTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             TTCCTTCEEEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             hCCCCCCEEEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence            36999999999999999 99999754 79999999999999876

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=98.16  E-value=2.9e-06  Score=58.54  Aligned_cols=44  Identities=30%  Similarity=0.536  Sum_probs=40.4

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccccc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTK   44 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~   44 (209)
                      ..|++||+.+|.|.+++ ||+.+.++.||||+++.|+|+|+.+..
T Consensus        83 ~gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           83 SSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             hCCCCCCEEEEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence            36999999999999999 999998888999999999999998853

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.15  E-value=1.1e-05  Score=56.89  Aligned_cols=77  Identities=14%  Similarity=0.052  Sum_probs=64.8

Q ss_pred             HHHHHHHhHHHHHcC---CHHHHHHHHHHHHHHH-hhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           60 CERKKHDGNLLFRAG---KYWRASKKYEKAAKII-EFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        60 a~~~~~~g~~~~~~~---~~~~A~~~y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      ....++.|..+.+++   +.++++..+...++.. |.              ....+++++|..++++|+|+.|+.+++.+
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--------------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l   97 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--------------EQRDYVFYLAVGNYRLKEYEKALKYVRGL   97 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--------------HHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--------------chHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            456678899999988   7779999999999864 31              23568999999999999999999999999


Q ss_pred             hhhCCCchHHHHHHH
Q 028390          136 LELEPLNVKALYRRS  150 (209)
Q Consensus       136 l~~~p~~~~~~~~~a  150 (209)
                      ++++|+|..+...+.
T Consensus        98 L~ieP~n~QA~~Lk~  112 (152)
T 1pc2_A           98 LQTEPQNNQAKELER  112 (152)
T ss_dssp             HHHCTTCHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHH
Confidence            999999988765544

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=98.15  E-value=3.2e-06  Score=56.28  Aligned_cols=42  Identities=21%  Similarity=0.432  Sum_probs=38.8

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDF   42 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~   42 (209)
                      ..|++||+.+|.|.+++ ||+.+.+..||+++++.|+++|+.+
T Consensus        64 ~gm~~Ge~~~~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           64 AQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             hCCCCCCEEEEEECHHHccCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            36999999999999999 9999987889999999999999875

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.12  E-value=4.3e-06  Score=55.18  Aligned_cols=44  Identities=18%  Similarity=0.343  Sum_probs=40.5

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccccc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTK   44 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~   44 (209)
                      ..|++||+.+|.|.+++ ||+.+....||+++++.|+|+|+.+..
T Consensus        54 ~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~~   98 (102)
T 2pbc_A           54 LGMCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIER   98 (102)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEGG
T ss_pred             hCCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEecc
Confidence            36999999999999999 999998778999999999999998864

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=98.12  E-value=3.3e-06  Score=57.33  Aligned_cols=42  Identities=29%  Similarity=0.302  Sum_probs=39.2

Q ss_pred             CCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEcccc
Q 028390            2 TMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFT   43 (209)
Q Consensus         2 ~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~   43 (209)
                      .|++||+.+|.|.+++ ||+.+.++.||+++++.|+|+|+.+.
T Consensus        75 gm~~Ge~~~~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           75 LMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             GSCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence            5999999999999999 99999888899999999999998764

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.11  E-value=4e-06  Score=58.31  Aligned_cols=49  Identities=24%  Similarity=0.231  Sum_probs=43.2

Q ss_pred             CCCCccEEEEEeCccc-ccccC-CcCCCCCCceEEEEEEEcccccCCCCCC
Q 028390            2 TMKKEEQATVTISAEY-LCSHE-VSELVSADSVLHYEVTLIDFTKEKPFWK   50 (209)
Q Consensus         2 ~m~~ge~~~~~~~~~~-~~~~~-~~~~ip~~~~l~~~~~l~~~~~~~~~~~   50 (209)
                      .|++||+.+|.|.+++ ||+.+ .+..||||+++.|+|+|+.+....+...
T Consensus        79 gm~~Ge~~~v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~~e~  129 (135)
T 2d9f_A           79 LMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPDLEM  129 (135)
T ss_dssp             GSCTTCEEEEEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCSSSS
T ss_pred             CCCCCCEEEEEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCchhh
Confidence            5999999999999999 99998 7788999999999999999986544433

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=98.09  E-value=4.2e-06  Score=56.32  Aligned_cols=41  Identities=24%  Similarity=0.447  Sum_probs=38.4

Q ss_pred             CCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccc
Q 028390            2 TMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDF   42 (209)
Q Consensus         2 ~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~   42 (209)
                      .|++||+.+|.|.+++ ||+.+.+..||+|+++.|+++|+.+
T Consensus        71 gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           71 KLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             GCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             CCCCCCEEEEEECHHHCcCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            5999999999999999 9999987889999999999999875

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.08  E-value=5e-05  Score=60.02  Aligned_cols=122  Identities=11%  Similarity=-0.045  Sum_probs=87.4

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC-
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL-  141 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-  141 (209)
                      ..-.|..+...|++++|+..+.++|...+...             ...++...+.+++++|+.+.|.+.+.+..+.+|+ 
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~-------------~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~  169 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEG-------------TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT  169 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC-------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence            34788889999999999999999977543111             3557888999999999999999999999889883 


Q ss_pred             ---chHHHHHHHHH--HhccC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028390          142 ---NVKALYRRSQA--HLKTS--ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA  198 (209)
Q Consensus       142 ---~~~~~~~~a~~--~~~~~--~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~  198 (209)
                         .......++.+  ....|  ++.+|...|+++.+..|+.......+. +...++.+.+.++
T Consensus       170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~  232 (310)
T 3mv2_B          170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG  232 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH
Confidence               23444555544  55556  899999999998887776223222222 5555555555544

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=98.04  E-value=6.1e-06  Score=56.54  Aligned_cols=43  Identities=14%  Similarity=0.250  Sum_probs=39.2

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccccc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTK   44 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~   44 (209)
                      ..|++||..+|.|.+++ ||+.+.. .|||++++.|+|+|+.+.+
T Consensus        80 ~gm~~Ge~~~~~ip~~~aYG~~g~~-~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           80 KGMCVGEKRKLIIPPALGYGKEGKG-KIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEEC
T ss_pred             hCCCCCCEEEEEEChHHhcCCCCCC-CCCCCCeEEEEEEEEEEEc
Confidence            36999999999999999 9999955 8999999999999998753

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.01  E-value=6.8e-05  Score=69.72  Aligned_cols=107  Identities=11%  Similarity=-0.025  Sum_probs=80.7

Q ss_pred             HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC--hHHHHHHH-----HHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT--DDEKHQAN-----GLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      .+-|..+...|.|++|...|.++-.........-  -..+++..     -....+|+++|.++...|++++|+..|.++ 
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence            3458999999999999999988742211100000  00111111     123558999999999999999999999776 


Q ss_pred             hhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 028390          137 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN  175 (209)
Q Consensus       137 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~  175 (209)
                          +++.+|++.|.++.++|+|++|+.+|..+.+..++
T Consensus      1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence                78999999999999999999999999999988854

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=98.00  E-value=8.1e-06  Score=56.75  Aligned_cols=44  Identities=27%  Similarity=0.426  Sum_probs=41.1

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccccc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTK   44 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~   44 (209)
                      ..|++||+.+|.|.+++ ||+.|.++.||+++++.|+++|..+..
T Consensus        78 ~gm~~Ge~~~v~ip~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~  122 (135)
T 1r9h_A           78 ATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSA  122 (135)
T ss_dssp             TTCCBTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             hcCCCCCEEEEEEChHHcCCCCCCCCCcCcCCcEEEEEEEEEeec
Confidence            36999999999999999 999998889999999999999999864

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.00  E-value=4.5e-05  Score=63.21  Aligned_cols=80  Identities=13%  Similarity=-0.022  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH-HSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ..+..+.+.|..+...|+|++|+.+|.+++.+.... +..+        +..+..++|+|.+|..+|+|++|+..+.+|+
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H--------p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS--------LNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC--------hHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            346668889999999999999999999999886542 2221        3457789999999999999999999999999


Q ss_pred             hh-----CCCchHH
Q 028390          137 EL-----EPLNVKA  145 (209)
Q Consensus       137 ~~-----~p~~~~~  145 (209)
                      ++     .|+++..
T Consensus       410 ~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          410 AIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHHTCTTCHHH
T ss_pred             HHHHHHcCCCChHH
Confidence            75     6777643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.96  E-value=4e-05  Score=63.45  Aligned_cols=89  Identities=4%  Similarity=-0.096  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH-HSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ..+..+.+.|..+...|+|++|+.+|.+++.+.... +..+        +..+..++|+|.+|..+|++++|+..+.+|+
T Consensus       327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H--------p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH--------PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC--------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            356677888999999999999999999999886542 2222        4457789999999999999999999999999


Q ss_pred             hh-----CCCchH---HHHHHHHHHh
Q 028390          137 EL-----EPLNVK---ALYRRSQAHL  154 (209)
Q Consensus       137 ~~-----~p~~~~---~~~~~a~~~~  154 (209)
                      ++     .|+++.   ++.+++.+..
T Consensus       399 ~i~~~~lG~~Hp~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          399 DIMRVTHGREHSLIEDLILLLEECDA  424 (429)
T ss_dssp             HHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            65     566643   3455555554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.85  E-value=8.5e-06  Score=67.41  Aligned_cols=117  Identities=13%  Similarity=-0.015  Sum_probs=45.3

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC--------hHHHHH----HHHHHHHHHhHHHHHHHhhcCHHHHH
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT--------DDEKHQ----ANGLRLSCYLNNAACKLKLEDYSETS  129 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~--------~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~  129 (209)
                      .+...|..+...|+|++|+.++..+.+..++....+        ...+..    ........|.++|.+++..|.|++|+
T Consensus        63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~  142 (449)
T 1b89_A           63 SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAK  142 (449)
T ss_dssp             ----------------------------------------------CHHHHTTTTTCC----------------CTTTHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            455666667777888888888887776432211110        001111    11223348999999999999999999


Q ss_pred             HHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          130 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       130 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      ..|..+        ..|.++|.|+.++|+++.|+..++++     +++..++....+--.++
T Consensus       143 ~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~  191 (449)
T 1b89_A          143 LLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK  191 (449)
T ss_dssp             HHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcC
Confidence            999977        46899999999999999999999999     35666655444433333

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=97.84  E-value=1.1e-05  Score=55.58  Aligned_cols=41  Identities=22%  Similarity=0.300  Sum_probs=37.2

Q ss_pred             CCCCccEEEEEeCccc-ccccCCc-----CCCCCCceEEEEEEEccc
Q 028390            2 TMKKEEQATVTISAEY-LCSHEVS-----ELVSADSVLHYEVTLIDF   42 (209)
Q Consensus         2 ~m~~ge~~~~~~~~~~-~~~~~~~-----~~ip~~~~l~~~~~l~~~   42 (209)
                      .|++||+.+|.|.+++ ||+.+..     ..||+|+++.|+|+|+.+
T Consensus        82 ~m~~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           82 PMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             CCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             ccCCCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            5999999999999999 9998853     579999999999999865

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=97.81  E-value=2.1e-05  Score=63.56  Aligned_cols=44  Identities=20%  Similarity=0.373  Sum_probs=39.9

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcC-----CCCCCceEEEEEEEccccc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSE-----LVSADSVLHYEVTLIDFTK   44 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~-----~ip~~~~l~~~~~l~~~~~   44 (209)
                      .+|++||.+.++|.|+| ||+.|.++     .|||++.|.|+++|+++..
T Consensus       187 ~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~  236 (356)
T 3jxv_A          187 KTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKT  236 (356)
T ss_dssp             TTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEEC
T ss_pred             hhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEec
Confidence            48999999999999999 99998654     6999999999999999864

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.73  E-value=0.0014  Score=53.37  Aligned_cols=114  Identities=12%  Similarity=-0.024  Sum_probs=96.2

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC------CC-hHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHH
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS------FT-DDEKHQANGLRLSCYLNNAACKLKLEDYSETSS  130 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  130 (209)
                      .....+...|......|+...|...+.+|+.+.....-      .+ ......+......+...++..+...|++.+|+.
T Consensus       113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~  192 (388)
T 2ff4_A          113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA  192 (388)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            34455667777778889999999999999988543211      11 244677888888999999999999999999999


Q ss_pred             HHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          131 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       131 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      .+..++..+|-+..++..+-.+++..|+..+|+..|+++..
T Consensus       193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          193 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988754

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.70  E-value=0.0027  Score=55.52  Aligned_cols=141  Identities=9%  Similarity=0.016  Sum_probs=94.8

Q ss_pred             HHHhHHHHHcCCHHHHHHHHHHHHHHHhh--------cCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           64 KHDGNLLFRAGKYWRASKKYEKAAKIIEF--------HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      ...+......|+++.|...|.+++...+.        .+. +++...........+|...+......|..+.|...+.+|
T Consensus       382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~-~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A  460 (679)
T 4e6h_A          382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT-NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC  460 (679)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc-chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34445555678888888888888876431        111 011111122223446777777777889999999999999


Q ss_pred             hhh-CCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390          136 LEL-EPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  206 (209)
Q Consensus       136 l~~-~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  206 (209)
                      ++. .+.....|...|..-...+ +.+.|...|+.+++..|+++..+..+......+++.. .-+..|.+.+.
T Consensus       461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~-~AR~lferal~  532 (679)
T 4e6h_A          461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES-QVKSLFESSID  532 (679)
T ss_dssp             HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH-HHHHHHHHHTT
T ss_pred             HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH-HHHHHHHHHHH
Confidence            987 5555777777777766665 4899999999999999999988877776655554433 33566666544

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=97.57  E-value=8.2e-05  Score=58.05  Aligned_cols=44  Identities=30%  Similarity=0.422  Sum_probs=41.0

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccccc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTK   44 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~   44 (209)
                      ..|++||++.|+|.+++ ||..|.++.||+++++.|+|+|..+..
T Consensus       115 ~gm~~Ge~~~v~ipp~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~  159 (280)
T 1q1c_A          115 ATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG  159 (280)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             hcCCCCCEEEEEECcHHhCCCcCccCCCCCCCcEEEEEEeeeecc
Confidence            36999999999999999 999998889999999999999998864

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.48  E-value=0.0015  Score=57.08  Aligned_cols=129  Identities=9%  Similarity=0.043  Sum_probs=95.6

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-CHHHHHHHHHHHhhhCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLELEP  140 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p  140 (209)
                      .+...+....+.|..+.|...|.+|+...+....              .+|...|..-...+ +++.|...|+.+++..|
T Consensus       436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~--------------~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p  501 (679)
T 4e6h_A          436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP--------------DIYLENAYIEYHISKDTKTACKVLELGLKYFA  501 (679)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT--------------HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence            4555556666778899999999999987443222              35666676666665 59999999999999999


Q ss_pred             CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          141 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN---NRVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~---~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                      +++..+...+......|+.+.|...|++++...|+   ...++..+.......+.... -.+.++++.
T Consensus       502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~-~~~v~~R~~  568 (679)
T 4e6h_A          502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS-VRTLEKRFF  568 (679)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH-HHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Confidence            99998888888888999999999999999999884   45666666666555443332 233444443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.40  E-value=0.00032  Score=54.69  Aligned_cols=64  Identities=9%  Similarity=0.053  Sum_probs=56.1

Q ss_pred             CHHHHHHHHHHHhhhCCC--chHHHHHHHHHHhcc-----CCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Q 028390          124 DYSETSSLCTKVLELEPL--NVKALYRRSQAHLKT-----SELEKAEADIKRALTIDPNN-RVVKLVYMELK  187 (209)
Q Consensus       124 ~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~l~  187 (209)
                      ....|...+++++++||+  +..+|..+|..|...     |+.++|...|+++++++|+. ..+...+..-.
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l  249 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADAL  249 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence            457899999999999999  566999999999995     99999999999999999975 77777777654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.39  E-value=0.002  Score=45.86  Aligned_cols=95  Identities=13%  Similarity=0.048  Sum_probs=64.4

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChH--------HHH--HHHHHHHHHHhHHHHHHHhhcCHHHH
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD--------EKH--QANGLRLSCYLNNAACKLKLEDYSET  128 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A  128 (209)
                      .+..+.-.|+.+|..|+|..|...|.+||.....-+.....        -..  .....-..+.+.+|.||.+++++.+|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            35667889999999999999999999998876532111000        000  00001235778899999999999999


Q ss_pred             HHHHHHHhhhCCCchHHHHHHHHHHh
Q 028390          129 SSLCTKVLELEPLNVKALYRRSQAHL  154 (209)
Q Consensus       129 ~~~~~~al~~~p~~~~~~~~~a~~~~  154 (209)
                      +..++.+ ......++....+|+.|.
T Consensus       142 i~~Le~I-p~k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          142 IAILDGI-PSRQRTPKINMLLANLYK  166 (167)
T ss_dssp             HHHHHTS-CGGGCCHHHHHHHHHHCC
T ss_pred             HHHHhcC-CchhcCHHHHHHHHHHhc
Confidence            9987554 333446777788887663

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.30  E-value=0.001  Score=53.73  Aligned_cols=67  Identities=9%  Similarity=-0.069  Sum_probs=57.1

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      .+...|..++..|+++.|+..+++|+.+.+.                ...|..+|.++...|++++|+..+.+|+.++|.
T Consensus       279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s----------------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          279 IYQIKAVSALVKGKTDESYQAINTGIDLEMS----------------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            3445666777789999999999999999643                346789999999999999999999999999998


Q ss_pred             chH
Q 028390          142 NVK  144 (209)
Q Consensus       142 ~~~  144 (209)
                      ...
T Consensus       343 ~~t  345 (372)
T 3ly7_A          343 ANT  345 (372)
T ss_dssp             HHH
T ss_pred             cCh
Confidence            753

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.27  E-value=0.0012  Score=44.94  Aligned_cols=77  Identities=14%  Similarity=0.030  Sum_probs=56.6

Q ss_pred             HHHHHHhHHHHHcCCHHH---HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           61 ERKKHDGNLLFRAGKYWR---ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~---A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ...++.|..+.++.....   ++..+...+.-.   .          +...-.+++.+|..++++|+|..|+.+++.+|+
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~---~----------p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG---S----------KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS---C----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---C----------cchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            344566677777666555   666666655531   0          013456789999999999999999999999999


Q ss_pred             hCCCchHHHHHHH
Q 028390          138 LEPLNVKALYRRS  150 (209)
Q Consensus       138 ~~p~~~~~~~~~a  150 (209)
                      .+|+|..+.-.+.
T Consensus       103 ~eP~n~QA~~Lk~  115 (126)
T 1nzn_A          103 TEPQNNQAKELER  115 (126)
T ss_dssp             HCTTCHHHHHHHH
T ss_pred             hCCCCHHHHHHHH
Confidence            9999988765544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.13  E-value=0.0061  Score=41.67  Aligned_cols=77  Identities=18%  Similarity=0.092  Sum_probs=58.0

Q ss_pred             HHHHHHhHHHHHcCCH---HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           61 ERKKHDGNLLFRAGKY---WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~---~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ...++.|..+.++...   .+++..+...+...+..              .-..++.+|..+.++|+|..|..+++.+++
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~--------------~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch--------------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            3445667777776544   46777777777643321              345789999999999999999999999999


Q ss_pred             hCCCchHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQ  151 (209)
Q Consensus       138 ~~p~~~~~~~~~a~  151 (209)
                      .+|+|..+.-.+..
T Consensus       107 ~eP~N~QA~~Lk~~  120 (134)
T 3o48_A          107 HERNNKQVGALKSM  120 (134)
T ss_dssp             TCTTCHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHH
Confidence            99999887655443

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=97.08  E-value=8.4e-05  Score=60.03  Aligned_cols=44  Identities=32%  Similarity=0.464  Sum_probs=1.0

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccccc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTK   44 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~   44 (209)
                      ..|++||...|+|.+++ ||+.|.++.||||+++.|+++|+.+..
T Consensus        75 ~gm~~Ge~~~~~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~~~~  119 (356)
T 3jxv_A           75 KTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTS  119 (356)
T ss_dssp             -------------------------------------------CC
T ss_pred             hcCCCCCEEEEEEChHHhCCCCCCCCCcCCCCEEEEEeeEEeeec
Confidence            36999999999999999 999998889999999999999998863

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.07  E-value=0.021  Score=40.02  Aligned_cols=111  Identities=7%  Similarity=-0.100  Sum_probs=84.7

Q ss_pred             HHHHHhHHHHHcCCH------HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           62 RKKHDGNLLFRAGKY------WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~------~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      .+.......-+.|+.      +.-+..|.+|+...|.....   .+    .--+.+|.+.|.. ..+++.+.|.+.|..+
T Consensus        15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~---~w----rrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A           15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYG---QN----ESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGT---TC----HHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccc---cH----HHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            444444555555777      88889999999988764311   11    2234455555544 5679999999999999


Q ss_pred             hhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028390          136 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK  180 (209)
Q Consensus       136 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  180 (209)
                      +.++....+.|...|.--.++|+...|...+.+++.+.|...+..
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            998888899999999999999999999999999999999765543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.05  E-value=0.0069  Score=41.95  Aligned_cols=77  Identities=18%  Similarity=0.091  Sum_probs=57.8

Q ss_pred             HHHHHHHhHHHHHcCCH---HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           60 CERKKHDGNLLFRAGKY---WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~---~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ....++.|..+.++...   .+++..+...+.-.|..              .-..++.+|..++++|+|..|..+++.+|
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~--------------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL  104 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------RRECLYYLTIGCYKLGEYSMAKRYVDTLF  104 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            34456677777776654   46777777776632221              34578999999999999999999999999


Q ss_pred             hhCCCchHHHHHHH
Q 028390          137 ELEPLNVKALYRRS  150 (209)
Q Consensus       137 ~~~p~~~~~~~~~a  150 (209)
                      +.+|+|..+.-.+.
T Consensus       105 ~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A          105 EHERNNKQVGALKS  118 (144)
T ss_dssp             HTCCCCHHHHHHHH
T ss_pred             hcCCCcHHHHHHHH
Confidence            99999987755443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.80  E-value=0.014  Score=51.43  Aligned_cols=61  Identities=21%  Similarity=0.196  Sum_probs=54.8

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      ++.--+...+..|+|+-|+..+.++...-|.....|+.++.||..+|+|+.|+-.++.+..
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm  399 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMPR  399 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence            4555566677889999999999999999999999999999999999999999999888753

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.76  E-value=0.059  Score=45.17  Aligned_cols=125  Identities=11%  Similarity=0.001  Sum_probs=86.3

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh---------HHHHHH----------------HHHHHHHHhHH
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD---------DEKHQA----------------NGLRLSCYLNN  115 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~---------~~~~~~----------------~~~~~~~~~~~  115 (209)
                      ..+...+.-....|+.+.|...|.+|+.. |.....+-         +....+                ......+|...
T Consensus       214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y  292 (493)
T 2uy1_A          214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH  292 (493)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence            34666777777899999999999999998 65432110         000000                01122456666


Q ss_pred             HHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          116 AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       116 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      +......+..+.|...+.++ ...+.....|...|..-...+ +.+.|...|+.+++..|+++.....+....
T Consensus       293 ~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e  364 (493)
T 2uy1_A          293 LNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            66666788999999999999 444445667777776666666 699999999999999999887655544443

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=96.68  E-value=0.13  Score=40.47  Aligned_cols=120  Identities=13%  Similarity=0.069  Sum_probs=81.0

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh--cC-----HHHH--HHHH
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--ED-----YSET--SSLC  132 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~-----~~~A--~~~~  132 (209)
                      .....|..++..|++.+|+..|...|...+-......++.++..++...+...+-.+-+.+  +.     ....  +..|
T Consensus       116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAY  195 (325)
T 3mv2_A          116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAY  195 (325)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            3556999999999999999999999998876554455666666666666544333333333  11     1111  1222


Q ss_pred             HHHhhhCCCchHHHHHHH-HHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 028390          133 TKVLELEPLNVKALYRRS-QAHLKTSELEKAEADIKRALTIDPNNRVVKL  181 (209)
Q Consensus       133 ~~al~~~p~~~~~~~~~a-~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~  181 (209)
                      -.-.++.|.+.-.-.+.| ...++.++|..|....++.+++.|..+.+.+
T Consensus       196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~q  245 (325)
T 3mv2_A          196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQ  245 (325)
T ss_dssp             GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHH
T ss_pred             hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence            233355666655556666 4678999999999999999999997554443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.67  E-value=0.052  Score=44.23  Aligned_cols=99  Identities=12%  Similarity=0.031  Sum_probs=80.3

Q ss_pred             HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC-----
Q 028390           65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-----  139 (209)
Q Consensus        65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----  139 (209)
                      ..|..++..|+|.+|...+.+....+....+         ......++.....+|..++++.++...++.+....     
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~  174 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDD---------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC  174 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence            6899999999999999999999998766332         25678889999999999999999999998886542     


Q ss_pred             CCc--hHHHHHHHHHHh-ccCCHHHHHHHHHHHHhc
Q 028390          140 PLN--VKALYRRSQAHL-KTSELEKAEADIKRALTI  172 (209)
Q Consensus       140 p~~--~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~l  172 (209)
                      |+.  ......-|..+. ..++|..|..+|-.+++-
T Consensus       175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            222  233455688888 899999999999888743

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.43  E-value=0.034  Score=46.73  Aligned_cols=82  Identities=10%  Similarity=0.008  Sum_probs=73.3

Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      ..++..+|.+......+..|..+|.+|+.+.|.+..++..+|.+....|+.-.|+-+|-+++......+.+...+..+-+
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            34677888888888999999999999999999999999999999999999999999999999887778888888887766


Q ss_pred             HH
Q 028390          189 KQ  190 (209)
Q Consensus       189 ~~  190 (209)
                      ..
T Consensus       232 ~~  233 (497)
T 1ya0_A          232 KA  233 (497)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.097  Score=43.08  Aligned_cols=99  Identities=12%  Similarity=-0.044  Sum_probs=79.6

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh---C
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL---E  139 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~  139 (209)
                      ....|..+++.|+++.|.+.|.++.........            .+.++.....+++..++|..+...+.++...   .
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~------------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~  201 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA------------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG  201 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence            567999999999999999999999887655443            4678888889999999999999999998654   2


Q ss_pred             CCc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390          140 PLN---VKALYRRSQAHLKTSELEKAEADIKRALTID  173 (209)
Q Consensus       140 p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~  173 (209)
                      +++   .......|..+...++|..|...|-.++.-.
T Consensus       202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            222   2344557888899999999999998876543

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=95.89  E-value=0.47  Score=37.30  Aligned_cols=115  Identities=17%  Similarity=0.234  Sum_probs=80.1

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh--cCH-----HHHHHHHHHH
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--EDY-----SETSSLCTKV  135 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~-----~~A~~~~~~a  135 (209)
                      ....|..++..|++.+|+..|...|...+-......++.++..++...+...+-.+-+.+  +..     +.....++-+
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA  184 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA  184 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence            457899999999999999999999998876655555666777777666544443333333  221     2322233332


Q ss_pred             -----hhhCCCchHHHHHHH-HHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390          136 -----LELEPLNVKALYRRS-QAHLKTSELEKAEADIKRALTIDPNNR  177 (209)
Q Consensus       136 -----l~~~p~~~~~~~~~a-~~~~~~~~~~~A~~~~~~a~~l~p~~~  177 (209)
                           .++.|.+.-.-.+.| ...++.++|..|....++.+++.|..+
T Consensus       185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~  232 (320)
T 3mkr_B          185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE  232 (320)
T ss_dssp             HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred             HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence                 355666655556666 467899999999999999999988633

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.79  E-value=0.21  Score=41.82  Aligned_cols=124  Identities=11%  Similarity=-0.036  Sum_probs=87.9

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-CHHHHHHHHHHHhhhC
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLELE  139 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~  139 (209)
                      ..+...+....+.+..+.|...|.+| . .+. ..             ..+|...|..-...+ +++.|...++.++...
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-~~-------------~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~  350 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-G-NEG-VG-------------PHVFIYCAFIEYYATGSRATPYNIFSSGLLKH  350 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-CC-------------HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-CC-------------hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence            34555555555677899999999999 3 232 11             235666666666666 6999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML  205 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  205 (209)
                      |+.+..+...+......|+.+.|...|+++    +.....+..........+... .-+..|.+++
T Consensus       351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~-~~r~v~~~~~  411 (493)
T 2uy1_A          351 PDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSME-LFRELVDQKM  411 (493)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHH-HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHH
Confidence            998888777788888999999999999987    345677777776666554332 2233455444

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.57  E-value=0.089  Score=44.21  Aligned_cols=83  Identities=16%  Similarity=0.004  Sum_probs=72.5

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      -....+...|+.......+..|..+|.+|+.+.|..+.               .|+.+|.+....|+.-+|+-+|.+++.
T Consensus       150 ~~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~---------------~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ---------------PYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc---------------hHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            34456788999999999999999999999999998765               799999999999999999999999998


Q ss_pred             hCCCchHHHHHHHHHHhc
Q 028390          138 LEPLNVKALYRRSQAHLK  155 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~  155 (209)
                      ...+.+.+.-++...+.+
T Consensus       215 ~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          215 VKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             SSBCCHHHHHHHHHHHHH
T ss_pred             cCCCChhHHHHHHHHHHH
Confidence            887788888877777654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.56  E-value=0.25  Score=35.47  Aligned_cols=96  Identities=17%  Similarity=0.110  Sum_probs=70.3

Q ss_pred             HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh--hhC---
Q 028390           65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL--ELE---  139 (209)
Q Consensus        65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~---  139 (209)
                      -.+..+|-.|+|..|+.+....    .+                ....+-.+.||.++++|..|+..++.++  .++   
T Consensus        38 L~~I~LyyngEY~R~Lf~L~~l----NT----------------~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~   97 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLHKL----NT----------------CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDP   97 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTC----CB----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCC
T ss_pred             hhhhhhhhcchHhHHHHHHHhc----ch----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence            3566777888888887665421    11                2235667789999999999999999999  232   


Q ss_pred             ------------CCchHH-HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 028390          140 ------------PLNVKA-LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK  180 (209)
Q Consensus       140 ------------p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  180 (209)
                                  |.+-.. +..+|..+..+|+-++|+.++......+|--+.+.
T Consensus        98 ~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE  151 (242)
T 3kae_A           98 DVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE  151 (242)
T ss_dssp             CCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             ccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence                        333333 44579999999999999999999888877554444

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.53  E-value=0.16  Score=39.07  Aligned_cols=69  Identities=10%  Similarity=0.096  Sum_probs=61.5

Q ss_pred             HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 028390          118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL  186 (209)
Q Consensus       118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l  186 (209)
                      ..++.|..++|+..+...++-+|.+.+....+...+.-.|+|+.|..-++.+.+++|........+..+
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l   74 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL   74 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            456889999999999999999999999999999999999999999999999999999986665544433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.08  E-value=0.048  Score=48.13  Aligned_cols=60  Identities=18%  Similarity=0.250  Sum_probs=52.0

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      ..+..++.-+..+|+|+.|+..-.+|+...|...               ..|..++.||..+|+|+.|+-.++-+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF---------------~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSF---------------ESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhh---------------HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3566678888899999999999999999977653               47999999999999999999877766

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.07  E-value=0.8  Score=38.38  Aligned_cols=102  Identities=11%  Similarity=0.021  Sum_probs=76.9

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC-CC
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-PL  141 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~  141 (209)
                      +...-..+.+.|++++|...|.+....- -.++             ...|+.+-..|.+.|++++|...+....... ..
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd-------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P  173 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFG-IQPR-------------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP  173 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCc-------------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            3344456778899999999998876531 1122             4468888888999999999999998877653 33


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCHH
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTI--DPNNRV  178 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l--~p~~~~  178 (209)
                      +...|..+-.++.+.|+.++|...|++..+.  .|+...
T Consensus       174 d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T  212 (501)
T 4g26_A          174 EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST  212 (501)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred             CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence            5677888889999999999999999987654  565433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.58  E-value=1  Score=37.74  Aligned_cols=106  Identities=8%  Similarity=0.021  Sum_probs=75.0

Q ss_pred             CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC-CCchHHHHHHHHHH
Q 028390           75 KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-PLNVKALYRRSQAH  153 (209)
Q Consensus        75 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~  153 (209)
                      ..+.|...|.+....- -.|+             ...|+.+-..|.+.|++++|...+......+ ..+...|..+-.+|
T Consensus        85 ~l~~A~~lf~~M~~~G-~~Pd-------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~  150 (501)
T 4g26_A           85 GLSRGFDIFKQMIVDK-VVPN-------------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGF  150 (501)
T ss_dssp             HHHHHHHHHHHHHHTT-CCCC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhC-CCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHH
Confidence            3566777776654421 1122             4578999999999999999999999887653 34677788889999


Q ss_pred             hccCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH
Q 028390          154 LKTSELEKAEADIKRALTI--DPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       154 ~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      .+.|++++|...|+...+.  .|+ ......+-....+.....+
T Consensus       151 ~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~  193 (501)
T 4g26_A          151 CRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADK  193 (501)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHH
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHH
Confidence            9999999999999998765  454 4444444444444444433

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=94.32  E-value=0.18  Score=31.44  Aligned_cols=37  Identities=16%  Similarity=0.061  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   92 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~   92 (209)
                      ..+.|..+..+|...-+.|+|.+|+.+|..||+.+..
T Consensus         7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   43 (83)
T 2v6y_A            7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ   43 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            5667888999999999999999999999999997654

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=93.66  E-value=0.19  Score=31.37  Aligned_cols=40  Identities=15%  Similarity=0.082  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390           53 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   92 (209)
Q Consensus        53 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~   92 (209)
                      .....+.+..+..+|...-+.|+|++|+.+|..|++.+..
T Consensus        12 ~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A           12 QVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3456778889999999999999999999999999997654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.59  E-value=2.6  Score=34.69  Aligned_cols=105  Identities=13%  Similarity=0.067  Sum_probs=77.7

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh-
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE-  137 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-  137 (209)
                      .+......+..+...|++.+|.........-.-...+         ....+.++......++..++|..|...+.++.. 
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~---------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~  206 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME---------MSEKIQFILEQMELSILKGDYSQATVLSRKILKK  206 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3555677899999999999999999887543211111         245677788888999999999999999988742 


Q ss_pred             --hCCCc----hHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 028390          138 --LEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTI  172 (209)
Q Consensus       138 --~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l  172 (209)
                        -.+..    ...+...|..+...++|.+|..+|..+...
T Consensus       207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              12222    234566788899999999999999888754

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.49  E-value=1  Score=29.74  Aligned_cols=75  Identities=12%  Similarity=-0.012  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc-------CCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHH
Q 028390           54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH-------HSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS  126 (209)
Q Consensus        54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  126 (209)
                      ......+-.+.+.|...-..|+-+.|+.+|.++|..+...       +..+.+.|+....+....-.|++.+..+++..+
T Consensus        16 k~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le   95 (116)
T 2dl1_A           16 REAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILE   95 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667788888888888999999999999999877642       224568899999999999999999988777665


Q ss_pred             HH
Q 028390          127 ET  128 (209)
Q Consensus       127 ~A  128 (209)
                      ..
T Consensus        96 ~~   97 (116)
T 2dl1_A           96 KG   97 (116)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=93.44  E-value=0.056  Score=35.89  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=28.8

Q ss_pred             CCCCccEEEEEeC-cccccccCCcCCCCCCceEEEEEEEccc
Q 028390            2 TMKKEEQATVTIS-AEYLCSHEVSELVSADSVLHYEVTLIDF   42 (209)
Q Consensus         2 ~m~~ge~~~~~~~-~~~~~~~~~~~~ip~~~~l~~~~~l~~~   42 (209)
                      .|++||...|.|. |+-||..+     ++++++.|+|+|+.+
T Consensus        76 Gmk~Ge~~~v~i~fP~~Yg~~~-----~~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           76 AMKVNQKKTLALTFPSDYHVKE-----LQSKPVTFEVVLKAI  112 (113)
T ss_dssp             TSCSSEEEEECCCCCTTSSSSG-----GGSCCCEEEEEECCB
T ss_pred             CCCCCCEEEEEEeCchhhCcCC-----CCCCEEEEEEEEEEE
Confidence            5999999999997 44378755     356899999999875

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=92.46  E-value=0.075  Score=37.81  Aligned_cols=20  Identities=20%  Similarity=0.134  Sum_probs=18.4

Q ss_pred             CCCCCccEEEEEeCccc-ccc
Q 028390            1 MTMKKEEQATVTISAEY-LCS   20 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~   20 (209)
                      ++|++||+++|+|.|++ ||.
T Consensus        77 ~~M~~Ge~~~~~ipp~laYG~   97 (165)
T 2lkn_A           77 CTMREGEIAQFLCDIKHVVLY   97 (165)
T ss_dssp             TTCCTTCEEEEECCHHHHSSH
T ss_pred             hcCccCceEEEEECHHHhcCC
Confidence            47999999999999999 993

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=92.19  E-value=1.2  Score=34.13  Aligned_cols=62  Identities=13%  Similarity=0.004  Sum_probs=52.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchH
Q 028390           68 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK  144 (209)
Q Consensus        68 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  144 (209)
                      ..+++.|..+.|+......|+-.|.+.               .+...+-..+.-.|+|+.|...++.+.+++|....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da---------------~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDA---------------SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            457889999999999999999876654               35667777788899999999999999999988744

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.94  E-value=2.9  Score=33.94  Aligned_cols=132  Identities=17%  Similarity=0.020  Sum_probs=86.0

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHH-------------------HHHhhcCCCChH---------HHHHHH-HH--H
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAA-------------------KIIEFHHSFTDD---------EKHQAN-GL--R  108 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al-------------------~~~~~~~~~~~~---------~~~~~~-~~--~  108 (209)
                      =....+.|..+.+.|++++-........                   ..+...+...+.         +|..-. ..  .
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788999999998877666554443                   333332222111         111111 11  2


Q ss_pred             HHHHhHHHHHHHhhcCHHHHHHHHHHHhhh----CCC--chHHHHHHHHHHhccCCHHHHHHHHHHHHhcC---CCCHHH
Q 028390          109 LSCYLNNAACKLKLEDYSETSSLCTKVLEL----EPL--NVKALYRRSQAHLKTSELEKAEADIKRALTID---PNNRVV  179 (209)
Q Consensus       109 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~---p~~~~~  179 (209)
                      ..+-..+|..|+..|+|.+|+..+.+.++-    |..  -...+.....+|..++++.++...+.++....   +.+|.+
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i  178 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence            224458999999999999999999888764    221  25677888999999999999999999997653   345666


Q ss_pred             HHHHHHHHHHHH
Q 028390          180 KLVYMELKDKQR  191 (209)
Q Consensus       180 ~~~l~~l~~~~~  191 (209)
                      ...+..+.-...
T Consensus       179 ~a~i~~~~Gi~~  190 (394)
T 3txn_A          179 QGALDLQSGILH  190 (394)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHH
Confidence            555555544333

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.07  E-value=0.5  Score=38.78  Aligned_cols=75  Identities=7%  Similarity=0.068  Sum_probs=60.2

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCC---CchHHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEP---LNVKALYRRSQAHLKTSELEKAEADIKRALTI--DPNNRVVKLVYME  185 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~~  185 (209)
                      ++..+|..|...|+++.|++.+.++.....   .-...++....++...++|..+...+.++..+  ...++.....+..
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            577899999999999999999999887643   33778899999999999999999999999766  3344555444433

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=90.56  E-value=3.5  Score=29.45  Aligned_cols=26  Identities=12%  Similarity=-0.087  Sum_probs=16.5

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHH
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKA   86 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~a   86 (209)
                      ..|+..|......|+++-|...|.++
T Consensus        35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           35 ITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            34666666666666666666666654

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=90.51  E-value=0.47  Score=29.53  Aligned_cols=37  Identities=14%  Similarity=0.005  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   92 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~   92 (209)
                      ....+..+...|...-..|+|++|+.+|..|++++-.
T Consensus         9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~   45 (85)
T 2v6x_A            9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML   45 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4556777888999999999999999999999997654

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=90.44  E-value=2.2  Score=26.90  Aligned_cols=41  Identities=22%  Similarity=0.263  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT   97 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~   97 (209)
                      +..|..+-.+++.+.+.|.|++||++..+|..++......+
T Consensus        12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmklt   52 (97)
T 2crb_A           12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLT   52 (97)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            55688888999999999999999999999998887654443

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=90.15  E-value=0.63  Score=30.97  Aligned_cols=38  Identities=16%  Similarity=0.165  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390           55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   92 (209)
Q Consensus        55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~   92 (209)
                      ..+..+..+..+|...-..|+|.+|+.+|..|++++-.
T Consensus        13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~   50 (117)
T 2cpt_A           13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   50 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            45667888889999999999999999999999998654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=89.91  E-value=3.7  Score=28.71  Aligned_cols=78  Identities=13%  Similarity=0.084  Sum_probs=57.8

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      +...+.- ...++.++|...|+.|+..   ...|            +.+|...|.--.++|+...|.+.+.+++.++|..
T Consensus        64 WIrYA~~-~ei~D~d~aR~vy~~a~~~---hKkF------------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           64 QVRFAEL-KAIQEPDDARDYFQMARAN---CKKF------------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             HHHHHHH-HHHHCGGGCHHHHHHHHHH---CTTB------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             HHHHHHH-HHhcCHHHHHHHHHHHHHH---hHHH------------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            3344422 4458999999999999996   4444            5788899999999999999999999999999875


Q ss_pred             hHHHHHHHHHHhccC
Q 028390          143 VKALYRRSQAHLKTS  157 (209)
Q Consensus       143 ~~~~~~~a~~~~~~~  157 (209)
                      .. ++..|..-.+.|
T Consensus       128 ~~-~le~a~~nl~~~  141 (161)
T 4h7y_A          128 LE-MLEIALRNLNLQ  141 (161)
T ss_dssp             HH-HHHHHHHHHHTT
T ss_pred             HH-HHHHHHHhhhcC
Confidence            44 344444433333

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=89.91  E-value=7  Score=35.99  Aligned_cols=98  Identities=8%  Similarity=-0.119  Sum_probs=74.9

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHHHHHHh--hcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKAAKIIE--FHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      .+...=+.+.+.|+.++|...|...-.+..  -.++             +..|+-+-..|.+.|++++|...+.+-...+
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-------------vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G  195 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-------------LDMYNAVMLGWARQGAFKELVYVLFMVKDAG  195 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-------------HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            466666788899999999999976544321  1222             5579999999999999999999998887643


Q ss_pred             -CCchHHHHHHHHHHhccCC-HHHHHHHHHHHHhc
Q 028390          140 -PLNVKALYRRSQAHLKTSE-LEKAEADIKRALTI  172 (209)
Q Consensus       140 -p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~l  172 (209)
                       ..+.-.|..+-.++.+.|+ .++|...|++..+.
T Consensus       196 ~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence             3466778888889999997 57888888887654

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=89.84  E-value=0.84  Score=28.98  Aligned_cols=37  Identities=14%  Similarity=0.058  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   92 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~   92 (209)
                      ....+..+...|...-..|+|++|+.+|..|++.+-.
T Consensus        11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~   47 (93)
T 1wfd_A           11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3556778889999999999999999999999998765

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=89.49  E-value=2.6  Score=29.09  Aligned_cols=50  Identities=10%  Similarity=0.080  Sum_probs=35.9

Q ss_pred             hcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          122 LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       122 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      .|+-++--+.+...+.-.+.++..++.+|.||.++|+..+|...+++|-+
T Consensus       104 ~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A          104 QGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            34444433333333445667799999999999999999999999998865

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.30  E-value=1  Score=37.99  Aligned_cols=70  Identities=13%  Similarity=0.043  Sum_probs=56.9

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC--Cc---hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEP--LN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  177 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~  177 (209)
                      .+.+++-+-..|+..+.|++|.....++.--..  .+   ...+|..|.++.-.++|.+|..++..|+...|.+.
T Consensus       230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            456778888899999999999999999852211  11   45678899999999999999999999999888653

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=88.96  E-value=0.9  Score=28.39  Aligned_cols=36  Identities=14%  Similarity=0.062  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   92 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~   92 (209)
                      ...+..+..+|...-..|+|++|+.+|..|++.+-.
T Consensus        13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~   48 (86)
T 4a5x_A           13 STAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ   48 (86)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            345667788999999999999999999999987654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.71  E-value=8  Score=31.76  Aligned_cols=88  Identities=13%  Similarity=0.143  Sum_probs=65.1

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh----CCCc--hHHHHHHHHHHhccCCHHHHHHHHHHHHh---cCCCCHH
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLEL----EPLN--VKALYRRSQAHLKTSELEKAEADIKRALT---IDPNNRV  178 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---l~p~~~~  178 (209)
                      ++.+...+|..|...|++.+|...+..+..-    ++..  ...+......+...+++..|...++++..   -.+.++.
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~  215 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES  215 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence            5566788999999999999999999887632    2222  55778889999999999999999999743   2455666


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 028390          179 VKLVYMELKDKQREYAK  195 (209)
Q Consensus       179 ~~~~l~~l~~~~~~~~~  195 (209)
                      ....+..+.-++...+.
T Consensus       216 lk~~~~~~~~~~~~~e~  232 (445)
T 4b4t_P          216 LKLEYYNLLVKISLHKR  232 (445)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            66666665555544433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.48  E-value=3.9  Score=35.60  Aligned_cols=49  Identities=10%  Similarity=0.032  Sum_probs=31.7

Q ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      .......|+++.|.+.....       ..             ...|.++|..+.+.++++.|+..|.++
T Consensus       659 f~~~l~~~~~~~A~~~~~~~-------~~-------------~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          659 FELALKVGQLTLARDLLTDE-------SA-------------EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHTCHHHHHHHHTTC-------CC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eehhhhcCCHHHHHHHHHhh-------Cc-------------HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            34455667777776654211       11             235778888888888888888877775

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=87.55  E-value=9.7  Score=30.57  Aligned_cols=83  Identities=8%  Similarity=-0.018  Sum_probs=62.6

Q ss_pred             HHHHHHHhhcCHHHHHHHHHHHhhhCC----------Cc------------hHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          114 NNAACKLKLEDYSETSSLCTKVLELEP----------LN------------VKALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       114 ~~a~~~~~~~~~~~A~~~~~~al~~~p----------~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      ..|......++.+.|...+..|+.+-.          .+            ..+...++.++...|++.+|+..+..++.
T Consensus       120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~  199 (388)
T 2ff4_A          120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF  199 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            333444456889999999999987631          12            13445578889999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHH
Q 028390          172 IDPNNRVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       172 l~p~~~~~~~~l~~l~~~~~~~~~~  196 (209)
                      .+|-+...+..+..+..+.....+.
T Consensus       200 ~~P~~E~~~~~lm~al~~~Gr~~~A  224 (388)
T 2ff4_A          200 EHPYREPLWTQLITAYYLSDRQSDA  224 (388)
T ss_dssp             HSTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999888887665554443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=85.86  E-value=1.6  Score=40.39  Aligned_cols=105  Identities=9%  Similarity=0.068  Sum_probs=72.4

Q ss_pred             HHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh--HHHHHH------HHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           64 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD--DEKHQA------NGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        64 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      +-.|..++..|++++|..+|.+|-.-.........  ......      .......|......+.+.+.++.+++....|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66899999999999999999987543222111110  111110      0112345677777888889999999999999


Q ss_pred             hhhCCCc-h----HHHHHHHHHHhccCCHHHHHHHHHH
Q 028390          136 LELEPLN-V----KALYRRSQAHLKTSELEKAEADIKR  168 (209)
Q Consensus       136 l~~~p~~-~----~~~~~~a~~~~~~~~~~~A~~~~~~  168 (209)
                      ++..+.. .    ..|.++-..+..+|+|++|...+..
T Consensus       926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            9875433 2    2577888899999999999777643

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=85.62  E-value=4.4  Score=25.76  Aligned_cols=41  Identities=15%  Similarity=0.152  Sum_probs=34.6

Q ss_pred             CHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390           52 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   92 (209)
Q Consensus        52 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~   92 (209)
                      +.+.+......-...|..+...|+++.|+.+|.+||...+.
T Consensus        12 d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q   52 (95)
T 1om2_A           12 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ   52 (95)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            45555566777789999999999999999999999998776

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=84.85  E-value=0.61  Score=32.74  Aligned_cols=23  Identities=26%  Similarity=0.255  Sum_probs=20.3

Q ss_pred             CCCCCccEEEEEeCccc-ccccCC
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEV   23 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~   23 (209)
                      ..|++||+.+|.|.+++ ||+.+.
T Consensus       104 ~gMk~Ge~~~v~IP~~~aYG~~g~  127 (157)
T 2jwx_A          104 PLMDVGETAMVTADSKYCYGPQGS  127 (157)
T ss_dssp             TTSCTTCEEEEEECGGGTTTTTCC
T ss_pred             cCCCCCCEEEEEECchhcCCcccc
Confidence            36999999999999999 998664

>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}

Probab=84.84  E-value=5.3  Score=24.99  Aligned_cols=69  Identities=14%  Similarity=-0.001  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHc---CCHHHHHHHHHHHHHHHhhc----CCCChHHHHHHHHHHHHHHhHHHHHHHhh
Q 028390           54 HEKIEACERKKHDGNLLFRA---GKYWRASKKYEKAAKIIEFH----HSFTDDEKHQANGLRLSCYLNNAACKLKL  122 (209)
Q Consensus        54 ~~~~~~a~~~~~~g~~~~~~---~~~~~A~~~y~~al~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  122 (209)
                      ..-.+.+-.+.+.|...-..   |+-+.|+.+|.+++.-+..-    ....-+.|+....+....-.|+..+-..+
T Consensus        10 k~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~~v~~RL   85 (89)
T 3eab_A           10 RVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAKDRL   85 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677788888888888   99999999999998776542    12234667777888777777777665544

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=83.71  E-value=3.4  Score=24.89  Aligned_cols=38  Identities=13%  Similarity=0.104  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhc
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH   93 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~   93 (209)
                      +......-...|..+...|++++|+.+|.+|+...+..
T Consensus        13 ~e~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP   50 (73)
T 3ax2_A           13 VQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP   50 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence            33445556689999999999999999999999987653

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=83.52  E-value=3.9  Score=29.22  Aligned_cols=47  Identities=15%  Similarity=0.046  Sum_probs=38.9

Q ss_pred             HHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 028390          119 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL  170 (209)
Q Consensus       119 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~  170 (209)
                      .+..|+++.|.+.+...     ++...|-++|.+....|+++-|...|.++-
T Consensus        15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            45789999998887665     567789999999999999999999888764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=83.02  E-value=4.2  Score=35.35  Aligned_cols=25  Identities=12%  Similarity=0.137  Sum_probs=17.9

Q ss_pred             HHHHHhHHHHHcCCHHHHHHHHHHH
Q 028390           62 RKKHDGNLLFRAGKYWRASKKYEKA   86 (209)
Q Consensus        62 ~~~~~g~~~~~~~~~~~A~~~y~~a   86 (209)
                      .+...|..+.+.++++.|+..|.++
T Consensus       683 ~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          683 KWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4567777777777777777777754

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=80.26  E-value=26  Score=32.40  Aligned_cols=71  Identities=8%  Similarity=-0.028  Sum_probs=56.5

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhh----hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCHHHH
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLE----LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI--DPNNRVVK  180 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l--~p~~~~~~  180 (209)
                      ..|+.+-.+|.+.|+.++|...+.....    -...+...|..+-..|.+.|++++|...|++..+.  .|+.....
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn  204 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA  204 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence            3578888899999999999999966432    23456788999999999999999999999998764  56544333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-20
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-17
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-13
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	6e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.003
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.003
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	8e-06
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-05
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.001
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	0.001
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.001
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	0.002
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.002
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.004

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 81.9 bits (201), Expect = 2e-20
 Identities = 52/163 (31%), Positives = 83/163 (50%)

Query: 46  KPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQAN 105
           K  W+MDT EK+E     K  G + F+ GKY +A  +Y K    +E  +  ++ E   + 
Sbjct: 1   KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASE 60

Query: 106 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEAD 165
              L+ +LN A C LKL +Y++    C K L L+  N K LYRR +A L  +E E A+ D
Sbjct: 61  SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD 120

Query: 166 IKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 208
            ++ L ++P N+  +L     + K +E+ +     +  M  K 
Sbjct: 121 FEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKF 163

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (182), Expect = 1e-17
 Identities = 54/161 (33%), Positives = 89/161 (55%)

Query: 49  WKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLR 108
           W+M++ EK+E     K  G + F+ GKY +A  +Y+K    +E+  SF+++E  +A  LR
Sbjct: 2   WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR 61

Query: 109 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKR 168
           L+ +LN A C LKL+ +S     C K LEL+  N K L RR +AHL  ++ E A AD ++
Sbjct: 62  LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQK 121

Query: 169 ALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKMG 209
            L + PNN+  K      + + R     + +++  M  ++ 
Sbjct: 122 VLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 162

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 63.1 bits (152), Expect = 2e-13
 Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 1/152 (0%)

Query: 45  EKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-DEKHQ 103
           +K  +     EK+++    K +GN  F+  +   A  KY++A         + D     +
Sbjct: 2   KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 61

Query: 104 ANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAE 163
              + +SC LN A C  K +DY +     +KVL+++  NVKALY+   A++    LE+A+
Sbjct: 62  KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK 121

Query: 164 ADIKRALTIDPNNRVVKLVYMELKDKQREYAK 195
            ++ +A +++PNN  ++  Y    +K +E  K
Sbjct: 122 ENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.3 bits (142), Expect = 6e-12
 Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 1/165 (0%)

Query: 38  TLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT 97
           +  DF ++      D  + +   E  K+ GN  F++  +  A KKY K  + +E   +  
Sbjct: 5   SHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAA 64

Query: 98  DDEKH-QANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKT 156
           +D    +   + LSC LN  ACKLK+ D+      C + LE++P N KALYRR+Q     
Sbjct: 65  EDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGL 124

Query: 157 SELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIF 201
            E ++A AD+K+A  I P ++ ++   +++K K +     +   +
Sbjct: 125 KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAY 169

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-07
 Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 12/135 (8%)

Query: 58  EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAA 117
            A E + H  +         +      +A                  N L        A 
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL--------AN 313

Query: 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177
            K +  +  E   L  K LE+ P    A    +    +  +L++A    K A+ I P   
Sbjct: 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373

Query: 178 VVK----LVYMELKD 188
                      E++D
Sbjct: 374 DAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 7e-06
 Identities = 12/64 (18%), Positives = 24/64 (37%)

Query: 113 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172
           +  A  + +  D+      C ++   EP N   L   S  H +   L+++      A+  
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 173 DPNN 176
           +P  
Sbjct: 63  NPLL 66

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 4e-04
 Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 15/129 (11%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
             + +  G    A   Y +A ++                      Y N A    +    +
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPD---------------AYCNLANALKEKGSVA 288

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 186
           E        L L P +  +L   +    +   +E+A    ++AL + P           +
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348

Query: 187 KDKQREYAK 195
             +Q +  +
Sbjct: 349 LQQQGKLQE 357

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 8/88 (9%), Positives = 24/88 (27%), Gaps = 15/88 (17%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
            +  ++AG +  A +   +  +                        L  ++   +     
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQ---------------EPDNTGVLLLLSSIHFQCRRLD 50

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHL 154
            ++   T  ++  PL  +A       + 
Sbjct: 51  RSAHFSTLAIKQNPLLAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 8/130 (6%)

Query: 47  PFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANG 106
              +      ++A E + +        G  + A  +   A    E        +    + 
Sbjct: 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE--------KAVTLDP 200

Query: 107 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADI 166
             L  Y+N      +   +    +   + L L P +       +  + +   ++ A    
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260

Query: 167 KRALTIDPNN 176
           +RA+ + P+ 
Sbjct: 261 RRAIELQPHF 270

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.6 bits (99), Expect = 8e-06
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 17/141 (12%)

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
           +  K  GN LF   KY  A+  Y +A                  N L    Y N A C L
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITR---------------NPLVAVYYTNRALCYL 49

Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV-- 178
           K++   +  + C + LEL+  +VKA +   Q  L+    ++A A+++RA ++    R+  
Sbjct: 50  KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109

Query: 179 VKLVYMELKDKQREYAKYQAE 199
              +   L+  +++      E
Sbjct: 110 GDDIPSALRIAKKKRWNSIEE 130

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 15/146 (10%)

Query: 53  THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCY 112
               ++  E  K   N  F+A  Y  A K Y +A ++   +                  Y
Sbjct: 3   ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------------IYY 47

Query: 113 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 172
            N +   L+ E Y       T+ +EL+   +K  YRR+ +++   +   A  D +  + +
Sbjct: 48  GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 107

Query: 173 DPNNRVVKLVYMELKDKQREYAKYQA 198
            P+++  K+ Y E     ++ A  +A
Sbjct: 108 KPHDKDAKMKYQECNKIVKQKAFERA 133

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 8/122 (6%)

Query: 61  ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 120
            ++K  GN  ++   +  A K Y+KA ++        D         + + Y        
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNK 56

Query: 121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 180
             E   +   +  +  E      KA  R   ++ K  + + A     ++L       V+K
Sbjct: 57  CRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116

Query: 181 LV 182
             
Sbjct: 117 KC 118

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 40.4 bits (94), Expect = 6e-05
 Identities = 7/67 (10%), Positives = 21/67 (31%)

Query: 120 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 179
           L      +   L  + ++  P +        +      + E+A+  + +++ + P     
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66

Query: 180 KLVYMEL 186
                 L
Sbjct: 67  ASQLRHL 73

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 20/148 (13%)

Query: 62  RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK 121
              ++G L      +  A   +               D   +          N       
Sbjct: 7   SLWNEGVLAADKKDWKGALDAFSAV-----------QDPHSRI-------CFNIGCMYTI 48

Query: 122 LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKL 181
           L++ +E     T+ +  +     A ++R   + +T + + A  D+K AL     N+++  
Sbjct: 49  LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID- 107

Query: 182 VYMELKDKQREYAKYQAEIFGTMLSKMG 209
            Y  L  + + +A         M +K  
Sbjct: 108 -YKILGLQFKLFACEVLYNIAFMYAKKE 134

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 35.9 bits (81), Expect = 0.001
 Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 14/134 (10%)

Query: 54  HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYL 113
            +++        D      AG+Y  A+    +A   +E  H+   +E     G    C+ 
Sbjct: 3   LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRA---MEISHTMPPEEAFDHAGFDAFCHA 59

Query: 114 NNAACKLKLEDYSETSSLCTKVLELEPLNVKA-----------LYRRSQAHLKTSELEKA 162
             A     L  + E      K L       +            +Y R+ A        +A
Sbjct: 60  GLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEA 119

Query: 163 EADIKRALTIDPNN 176
             + K+ + +    
Sbjct: 120 MPEFKKVVEMIEER 133

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 11/109 (10%), Positives = 25/109 (22%), Gaps = 17/109 (15%)

Query: 67  GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 126
           G +  +        K    +   I  H                 C ++           S
Sbjct: 127 GIISNKQTHTSAIVKPQSSSCSYICQH-----------------CLVHLGDIARYRNQTS 169

Query: 127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 175
           +  S      +L P N +   + +       +         R++ +   
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 1   MTMKKEEQATVTISAEYLC-SHEVSELVSADSVLHYEVTLIDFT 43
            TM K E A  TI ++Y          +   + L +EV L +++
Sbjct: 74  ATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS 117

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 8/128 (6%), Positives = 25/128 (19%), Gaps = 15/128 (11%)

Query: 65  HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF---------------TDDEKHQANGLRL 109
           +   LL +      +  +      ++                                 L
Sbjct: 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPL 242

Query: 110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRA 169
                +      L+   E+     ++       +  +    +A       ++        
Sbjct: 243 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 302

Query: 170 LTIDPNNR 177
             +DP   
Sbjct: 303 KAVDPMRA 310

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.004
 Identities = 21/132 (15%), Positives = 37/132 (28%), Gaps = 15/132 (11%)

Query: 58  EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAA 117
           E     K  GN     G    A + Y +A K+   +H    +                  
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60

Query: 118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 177
           CK                        K   R++ A    +  E+A+   +  L  + NN 
Sbjct: 61  CKTVDLKPD---------------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP 105

Query: 178 VVKLVYMELKDK 189
            +K     ++ +
Sbjct: 106 QLKEGLQNMEAR 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.97
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.97
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.94
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.87
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.82
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.73
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.73
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.66
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.65
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.64
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.63
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.57
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.56
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.56
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.55
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.53
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.53
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.5
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.48
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.47
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.46
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.45
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.44
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.42
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.42
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.39
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.19
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.14
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.14
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.14
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.13
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.04
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.0
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.99
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.93
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.93
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.92
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.78
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	98.72
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.71
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.67
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.67
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.63
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.62
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	98.6
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	98.59
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	98.59
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.57
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	98.56
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	98.55
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.53
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.52
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	98.46
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	98.44
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	98.4
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.21
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	98.06
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.86
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.54
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.43
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.42
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	94.02
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	93.53
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	93.32
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	91.44
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	90.36
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	83.95
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	81.67
d2ijqa1	145	Hypothetical protein rrnAC1037 {Haloarcula marismo	81.56

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-29  Score=183.42  Aligned_cols=161  Identities=34%  Similarity=0.593  Sum_probs=156.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHH
Q 028390           48 FWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSE  127 (209)
Q Consensus        48 ~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  127 (209)
                      .|+++.++++..+..+++.|+.+|+.|+|++|+..|++||.+++........+......+...+|.|+|.||+++|+|++
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~   80 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA   80 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhccc
Confidence            48899999999999999999999999999999999999999999988888888889999999999999999999999999


Q ss_pred             HHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 028390          128 TSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSK  207 (209)
Q Consensus       128 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  207 (209)
                      |+.+++++|.++|+++.+++++|.||..+|++++|+.+|+++++++|+|+.+...+..+..++.+....++..|++||+.
T Consensus        81 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  160 (170)
T d1p5qa1          81 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  160 (170)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q 028390          208 M  208 (209)
Q Consensus       208 ~  208 (209)
                      +
T Consensus       161 ~  161 (170)
T d1p5qa1         161 L  161 (170)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.97  E-value=2.5e-29  Score=182.42  Aligned_cols=162  Identities=31%  Similarity=0.588  Sum_probs=156.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHH
Q 028390           47 PFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS  126 (209)
Q Consensus        47 ~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  126 (209)
                      +.|.|+..++...+..+++.|+.+|+.|+|.+|+..|.+||.+++.......+.......+...+|+|+|.||+++|+|+
T Consensus         2 e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~   81 (168)
T d1kt1a1           2 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT   81 (168)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcc
Confidence            67999999999999999999999999999999999999999999988888878888889999999999999999999999


Q ss_pred             HHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390          127 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS  206 (209)
Q Consensus       127 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  206 (209)
                      +|+.+|++++.++|+++++++++|.++..+|++++|+.+|.++++++|+|+.+...+..+...+.+..+++++.|++||.
T Consensus        82 ~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1          82 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 028390          207 KM  208 (209)
Q Consensus       207 ~~  208 (209)
                      .+
T Consensus       162 ~~  163 (168)
T d1kt1a1         162 KF  163 (168)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.94  E-value=1.4e-25  Score=160.08  Aligned_cols=149  Identities=28%  Similarity=0.411  Sum_probs=137.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhHHHHHHHhhcC
Q 028390           46 KPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-DEKHQANGLRLSCYLNNAACKLKLED  124 (209)
Q Consensus        46 ~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~  124 (209)
                      .+.|+++.+++...+..+++.|+.+|+.|+|.+|+..|.+|+.+++....... ........+...+++|+|.||+++|+
T Consensus         3 ~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1           3 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD   82 (153)
T ss_dssp             CSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence            46799999999999999999999999999999999999999999887665543 34566677788899999999999999


Q ss_pred             HHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 028390          125 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA  194 (209)
Q Consensus       125 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~  194 (209)
                      |++|+.+|++++.++|.++++|+++|.++..+|++++|+.+|+++++++|+|+.+...+..+..++++.+
T Consensus        83 ~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1          83 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR  152 (153)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999999999998887654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.8e-23  Score=150.15  Aligned_cols=149  Identities=31%  Similarity=0.492  Sum_probs=133.4

Q ss_pred             CHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHH
Q 028390           52 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF-TDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS  130 (209)
Q Consensus        52 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  130 (209)
                      ........+..++..|+.++..|+|..|+..|.+||.+.+..... .........+....++.|+|.|++++|+|++|+.
T Consensus        19 ~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~   98 (169)
T d1ihga1          19 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD   98 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhh
Confidence            456677888899999999999999999999999999987654322 2233445677888999999999999999999999


Q ss_pred             HHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028390          131 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEI  200 (209)
Q Consensus       131 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~  200 (209)
                      .|+++++++|+++++|+++|.+|..+|++++|+.+|+++++++|+|+.+...+..+...+++..+++|..
T Consensus        99 ~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~k~~  168 (169)
T d1ihga1          99 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA  168 (169)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999988887754

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.4e-22  Score=136.65  Aligned_cols=115  Identities=23%  Similarity=0.246  Sum_probs=108.7

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+++.|+.++..|+|++|+..|+++|...|.++               .+|.++|.||..+|++++|+..+.+++.+
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---------------VLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch---------------hhhhcccccccccccccccchhhhhHHHh
Confidence            356788999999999999999999999999977754               47999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 028390          139 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD  188 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~  188 (209)
                      +|+++.+|+++|.++..+|++++|+..|+++++++|+++.+...+.+++.
T Consensus        67 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999998875

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.4e-21  Score=136.57  Aligned_cols=124  Identities=23%  Similarity=0.340  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHH
Q 028390           54 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT  133 (209)
Q Consensus        54 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  133 (209)
                      +..++.+..++.+|+.+++.|+|++|+..|.+++.+.|..               ..+|.++|.|++.+|++++|+..|.
T Consensus         4 ~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~   68 (159)
T d1a17a_           4 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDAT   68 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh---------------hhhhhhhHHHHHhccccchHHHHHH
Confidence            4456789999999999999999999999999999997764               4579999999999999999999999


Q ss_pred             HHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          134 KVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       134 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      ++++++|.++.+++++|.++..+|++++|+.++++++.++|+++.+...+..+...+++
T Consensus        69 kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          69 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988888665544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=3e-20  Score=136.51  Aligned_cols=102  Identities=28%  Similarity=0.417  Sum_probs=96.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+++.|+.+++.|+|++|+..|++||.+.|..+               .+|.++|.||..+|+|++|+.+|.+++.++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~---------------~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------------VYYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            56788999999999999999999999999977654               589999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  176 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~  176 (209)
                      |+++.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999998754

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6.2e-19  Score=121.36  Aligned_cols=118  Identities=21%  Similarity=0.249  Sum_probs=104.0

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      +.|..+++.|+.++..|+|++|+.+|+++|.+.|.+               ..++.++|.||..+|+|++|+.+|.+++.
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------MTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            468889999999999999999999999999997764               34899999999999999999999999999


Q ss_pred             hCCCch-------HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          138 LEPLNV-------KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       138 ~~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      ++|.+.       .+++++|.++..++++++|+.+|++++..+|+ +++...+..+.+.++
T Consensus        67 l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_          67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence            998774       47788889999999999999999999999874 677777777766554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.7e-17  Score=113.12  Aligned_cols=113  Identities=16%  Similarity=0.165  Sum_probs=100.6

Q ss_pred             HHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh---hcCHHHHHHHHHHHhhhCCC
Q 028390           65 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK---LEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        65 ~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~  141 (209)
                      +.++.++..+++++|.+.|.+++.+.|.++               .+++|+|.|+++   .+++++|+..+++++..+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~---------------~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~   68 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSK---------------STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK   68 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCH---------------HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC
Confidence            567788899999999999999999977654               479999999986   55667899999999999886


Q ss_pred             c--hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          142 N--VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       142 ~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      +  ..+++++|.+|..+|++++|+.+|+++++++|++..+...+..|.+++++
T Consensus        69 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            6  45899999999999999999999999999999999999999988887654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=7.3e-17  Score=122.39  Aligned_cols=144  Identities=19%  Similarity=0.107  Sum_probs=118.4

Q ss_pred             ceEEEEEEEcccccCCCCCCCCHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 028390           31 SVLHYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS  110 (209)
Q Consensus        31 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~  110 (209)
                      .....++.|..+.+.........   ...+..+...|..++..|++++|+..|.++|.+.|+.+               .
T Consensus        11 ~~~~~e~al~~~~e~l~~~~~~~---~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~---------------~   72 (259)
T d1xnfa_          11 PTLQQEVILARMEQILASRALTD---DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP---------------E   72 (259)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH---------------H
T ss_pred             ccHHHHHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH---------------H
Confidence            33444444444443333333333   33577889999999999999999999999999977654               4


Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      +|+++|.++..+|++++|+..|.+++.++|+++.+++++|.++..+|++++|+..|+++++++|++......+..+....
T Consensus        73 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  152 (259)
T d1xnfa_          73 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL  152 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999999999999988777666665554


Q ss_pred             HH
Q 028390          191 RE  192 (209)
Q Consensus       191 ~~  192 (209)
                      ..
T Consensus       153 ~~  154 (259)
T d1xnfa_         153 DE  154 (259)
T ss_dssp             CH
T ss_pred             hh
Confidence            43

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.66  E-value=1.3e-16  Score=113.09  Aligned_cols=116  Identities=17%  Similarity=0.142  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+...+..|+.++..|+|++|+..|++||.+.+..+....   .........+|+|+|.||..+|+|++|+.++++++.
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~---~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~   83 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA---FDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   83 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC---CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhh---cccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence            34555667799999999999999999999999987654221   111233467899999999999999999999999998


Q ss_pred             hCCC-----------chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390          138 LEPL-----------NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  176 (209)
Q Consensus       138 ~~p~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~  176 (209)
                      +.|.           ...+++++|.+|..+|++++|+.+|++++++.|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          84 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            7432           35589999999999999999999999999996644

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1e-15  Score=112.14  Aligned_cols=122  Identities=16%  Similarity=0.124  Sum_probs=101.8

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+..++.+|..++..|+|+.|+..|.++.   +  +.             ..+++|+|.||..+|++++|+.+|+++++
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i~---~--~~-------------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~   64 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSAVQ---D--PH-------------SRICFNIGCMYTILKNMTEAEKAFTRSIN   64 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS---S--CC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhcC---C--CC-------------HHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            345567789999999999999999998631   1  11             34789999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC----------------HHHHHHHHHHHHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN----------------RVVKLVYMELKDKQREYAKYQ  197 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~----------------~~~~~~l~~l~~~~~~~~~~~  197 (209)
                      ++|+++.+|+++|.++..+|++++|+.+|++++...|.+                .++...++.+...+.+..+..
T Consensus        65 ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~  140 (192)
T d1hh8a_          65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE  140 (192)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999999999999999999999999876654                245556677776666665543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.64  E-value=6.2e-16  Score=103.59  Aligned_cols=93  Identities=11%  Similarity=0.071  Sum_probs=86.9

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      ....|..+++.|++.+|+..|.+++...|..               ..+|.++|.++..+|++++|+..+.++++++|++
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   83 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPER---------------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   83 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccccccc---------------chhhhhhhhhhhhhhhHHHhhccccccccccccc
Confidence            3578999999999999999999999987764               3589999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 028390          143 VKALYRRSQAHLKTSELEKAEADIKRAL  170 (209)
Q Consensus       143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~  170 (209)
                      ..+++.+|.+|..+|++++|+..+++.+
T Consensus        84 ~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          84 IAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999876

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.63  E-value=7.1e-16  Score=108.05  Aligned_cols=114  Identities=13%  Similarity=0.044  Sum_probs=98.7

Q ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhh----------cCHHHHHHHHHHHh
Q 028390           67 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL----------EDYSETSSLCTKVL  136 (209)
Q Consensus        67 g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~al  136 (209)
                      +..+-+.+.|++|+..|.+++.+.|.++               .+++++|.++..+          +.+++|+..+++++
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~---------------~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl   68 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPLDA---------------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL   68 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCcch---------------HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3445667789999999999999988764               4799999999854          55689999999999


Q ss_pred             hhCCCchHHHHHHHHHHhccCC-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          137 ELEPLNVKALYRRSQAHLKTSE-----------LEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       137 ~~~p~~~~~~~~~a~~~~~~~~-----------~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      +++|+++.+++++|.+|..+|+           |+.|..+|+++++++|++...+..+..+....+...+
T Consensus        69 ~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1          69 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred             HhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988764           7899999999999999999999999998877655544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1e-14  Score=114.56  Aligned_cols=119  Identities=15%  Similarity=0.007  Sum_probs=68.2

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhc-CHHHHHHHHHHHhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLE  137 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~  137 (209)
                      .+..+...|..+.+.+.+++|+..|.+||.+.|....               +|+++|.++..+| ++++|+..+++++.
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~---------------a~~~r~~~l~~l~~~~~eal~~~~~al~  106 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT---------------VWHFRRVLLKSLQKDLHEEMNYITAIIE  106 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChH---------------HHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence            3455556677777777888888888888887666432               4555555555443 24555555555555


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      ++|++..+|+.+|.++..+|++++|+.+++++++++|.+..++..+..+...++.
T Consensus       107 ~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~  161 (315)
T d2h6fa1         107 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL  161 (315)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh
Confidence            5555555555555555555555555555555555555555555555555444443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-14  Score=113.76  Aligned_cols=131  Identities=16%  Similarity=0.059  Sum_probs=100.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC------------hHH-------HHHHHHHHHHHHhHHHHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------DDE-------KHQANGLRLSCYLNNAACKL  120 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~------------~~~-------~~~~~~~~~~~~~~~a~~~~  120 (209)
                      +..+...|..++..|++++|+..|.+++.+.|..+...            .++       .....+....++..+|.++.
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence            45566778888888888888888888888765432110            000       01111223457788889999


Q ss_pred             hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      .+|++++|+..+.++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.+...+..+..++
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999999999999888888876653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.2e-14  Score=103.35  Aligned_cols=101  Identities=16%  Similarity=0.099  Sum_probs=90.9

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP  140 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  140 (209)
                      ..+.+.|..++..|++++|+..|.+||+++|..               ..+|.++|.|+..+|+|++|+.+|++++...+
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~---------------~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~  101 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  101 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh---------------hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCc
Confidence            357899999999999999999999999997764               45899999999999999999999999998655


Q ss_pred             Cc----------------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 028390          141 LN----------------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN  176 (209)
Q Consensus       141 ~~----------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~  176 (209)
                      .+                ..+++++|.++..+|++++|...+.+++.+.|+.
T Consensus       102 ~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         102 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            43                4789999999999999999999999999998864

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.3e-14  Score=113.22  Aligned_cols=106  Identities=16%  Similarity=0.151  Sum_probs=93.9

Q ss_pred             HHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCC
Q 028390           61 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP  140 (209)
Q Consensus        61 ~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p  140 (209)
                      ..+...|..+...|++++|+..|.+++...|..               ..++.++|.++..+|++++|+..|.++++++|
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---------------YLLWNKLGATLANGNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ccchhhHHHHHHHHHHhhhhccccccccccccc---------------ccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence            346678999999999999999999999987664               34799999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 028390          141 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKL  181 (209)
Q Consensus       141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~  181 (209)
                      +++.+++.+|.+|..+|++++|+..|+++++++|++..+..
T Consensus       238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence            99999999999999999999999999999999998876543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.6e-14  Score=91.50  Aligned_cols=88  Identities=17%  Similarity=0.121  Sum_probs=73.4

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+++.|..+++.|+|..|+..|.+|+.+.+..+...        .....++.++|.|+.++|++++|+..++++++++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~--------~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC--------ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            56678999999999999999999999999988755432        1245678899999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhc
Q 028390          140 PLNVKALYRRSQAHLK  155 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~  155 (209)
                      |++..++.+++.....
T Consensus        77 P~~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          77 PEHQRANGNLKYFEYI   92 (95)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            9999888888765543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.7e-14  Score=112.18  Aligned_cols=116  Identities=11%  Similarity=-0.025  Sum_probs=105.7

Q ss_pred             HHHHHHHHhHHHHHcC-CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           59 ACERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      .+..+..+|..+...| ++++|+..|.+++...|..               ..+|.++|.++..+|++++|+..+.++++
T Consensus        76 ~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~---------------~~a~~~~~~~~~~l~~~~eAl~~~~kal~  140 (315)
T d2h6fa1          76 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---------------YQVWHHRRVLVEWLRDPSQELEFIADILN  140 (315)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh---------------hhHHHHHhHHHHhhccHHHHHHHHhhhhh
Confidence            3567889999988876 5999999999999997764               45899999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      ++|.+..+|+.+|.++..+|++++|+.+++++++++|.+..++..+..+...
T Consensus       141 ~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         141 QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  192 (315)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888877544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.1e-13  Score=104.46  Aligned_cols=119  Identities=10%  Similarity=-0.040  Sum_probs=99.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHH
Q 028390           74 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAH  153 (209)
Q Consensus        74 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~  153 (209)
                      .+++.|+..+.+++...+    ..       ++..+.+++++|.+|..+|++++|+..|.+++.++|+++.+++++|.+|
T Consensus        13 ~~~e~al~~~~e~l~~~~----~~-------~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   81 (259)
T d1xnfa_          13 LQQEVILARMEQILASRA----LT-------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL   81 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSC----CC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhh----cC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHH
Confidence            355677778887765321    11       2345778999999999999999999999999999999999999999999


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          154 LKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       154 ~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      ..+|++++|+..|+++++++|+++.+...+..+...+++..+.. ..|.+.
T Consensus        82 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~a  131 (259)
T d1xnfa_          82 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ-DDLLAF  131 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHH-HHHHHH
Confidence            99999999999999999999999999999999988887766543 344443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.5e-13  Score=106.73  Aligned_cols=136  Identities=18%  Similarity=0.144  Sum_probs=82.3

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCC------------hHHH-H------HHHHHHHHHHhHHHHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------DDEK-H------QANGLRLSCYLNNAACKL  120 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~------------~~~~-~------~~~~~~~~~~~~~a~~~~  120 (209)
                      ...+...|..+...|++++|+..|.+++...+......            .++. .      ...+....++.++|.++.
T Consensus       203 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  282 (388)
T d1w3ba_         203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK  282 (388)
T ss_dssp             HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56778899999999999999999999998765432210            0000 0      001112234555555555


Q ss_pred             hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 028390          121 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK  195 (209)
Q Consensus       121 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~  195 (209)
                      .+|++++|+..+..++...|.+...++.+|.++...|++++|+..|+++++++|+++.+...++.+....++..+
T Consensus       283 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  357 (388)
T d1w3ba_         283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            555555555555555555555555556666666666666666666666666666666666666666555544443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.47  E-value=6.3e-13  Score=88.56  Aligned_cols=91  Identities=15%  Similarity=0.126  Sum_probs=84.8

Q ss_pred             HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      ++++|.+++..|++++|+..+++++..+|+++.+|+.+|.++..+|++++|+.+|+++++++|++..++..++.+...++
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHh
Q 028390          192 EYAKYQAEIFGT  203 (209)
Q Consensus       192 ~~~~~~~~~~~~  203 (209)
                      +..+... .+++
T Consensus        99 ~~~~A~~-~l~~  109 (112)
T d1hxia_          99 NANAALA-SLRA  109 (112)
T ss_dssp             HHHHHHH-HHHH
T ss_pred             CHHHHHH-HHHH
Confidence            8877643 4443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.9e-13  Score=88.52  Aligned_cols=81  Identities=19%  Similarity=0.094  Sum_probs=74.0

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc-------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN-------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY  183 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l  183 (209)
                      -++++|.+++..|+|.+|+..+++|+++.|.+       ..++.++|.++.++|++++|+..|+++++++|+++.+...+
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            47899999999999999999999999886543       67899999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 028390          184 MELKDKQR  191 (209)
Q Consensus       184 ~~l~~~~~  191 (209)
                      ..++..+.
T Consensus        87 ~~~~~~l~   94 (95)
T d1tjca_          87 KYFEYIMA   94 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            88877664

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=3.6e-13  Score=97.93  Aligned_cols=93  Identities=18%  Similarity=0.174  Sum_probs=85.8

Q ss_pred             HHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          111 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       111 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      -+.+.|..+++.|+|++|+..|++++.++|.++.+|+++|.||..+|++++|+.+|+++++++|++..++..++.+...+
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l   85 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   85 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 028390          191 REYAKYQAEIFGTM  204 (209)
Q Consensus       191 ~~~~~~~~~~~~~~  204 (209)
                      +++.+... .|++.
T Consensus        86 ~~~~~A~~-~~~~a   98 (201)
T d2c2la1          86 ESYDEAIA-NLQRA   98 (201)
T ss_dssp             TCHHHHHH-HHHHH
T ss_pred             CCHHHHHH-HHHHH
Confidence            88877643 45544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.6e-12  Score=100.96  Aligned_cols=122  Identities=12%  Similarity=0.039  Sum_probs=107.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHH
Q 028390           69 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYR  148 (209)
Q Consensus        69 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  148 (209)
                      .....+.+.+|+..|.+++.+.|....             ..++.++|.++..+|++++|+..+.+++..+|+++.+++.
T Consensus       145 ~~~~~~~~~~a~~~~~~al~~~p~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  211 (323)
T d1fcha_         145 SLLSDSLFLEVKELFLAAVRLDPTSID-------------PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK  211 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTSCC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHhhcccc-------------cccchhhHHHHHHHHHHhhhhcccccccccccccccchhh
Confidence            445567789999999999998776544             4578999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          149 RSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       149 ~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      +|.++..+|++++|+..|+++++++|+++.++..+..+...+++..+. ...|.+.
T Consensus       212 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A-~~~~~~a  266 (323)
T d1fcha_         212 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA-VEHFLEA  266 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH-HHHHHHH
T ss_pred             hhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH-HHHHHHH
Confidence            999999999999999999999999999999999999999998887765 3345443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.7e-12  Score=87.03  Aligned_cols=92  Identities=13%  Similarity=0.124  Sum_probs=84.9

Q ss_pred             HhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 028390          112 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR  191 (209)
Q Consensus       112 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~  191 (209)
                      +...|..++..|+|++|+..|++++..+|.++.+|+.+|.+|..+|++++|+.++.++++++|+++.+...+..+...++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHhh
Q 028390          192 EYAKYQAEIFGTM  204 (209)
Q Consensus       192 ~~~~~~~~~~~~~  204 (209)
                      .+.+..+ .|.+.
T Consensus        86 ~~~~A~~-~~~~a   97 (117)
T d1elwa_          86 RFEEAKR-TYEEG   97 (117)
T ss_dssp             CHHHHHH-HHHHH
T ss_pred             CHHHHHH-HHHHH
Confidence            8876644 44444

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=1.1e-11  Score=89.18  Aligned_cols=119  Identities=15%  Similarity=0.072  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCC-------CChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHH
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS-------FTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS  129 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~  129 (209)
                      ......+...|......|++++|+..|.+|+.+.+....       ........+......++.+++.++..+|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            456778889999999999999999999999998664321       1135567788889999999999999999999999


Q ss_pred             HHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHH-------HhcCCC
Q 028390          130 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRA-------LTIDPN  175 (209)
Q Consensus       130 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-------~~l~p~  175 (209)
                      ..+++++.++|.+..+|..++.++..+|++.+|+..|+++       +-++|.
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            9999999999999999999999999999999999999998       446775

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.1e-12  Score=91.15  Aligned_cols=93  Identities=20%  Similarity=0.145  Sum_probs=84.4

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      ..+...|..+++.|+|++|+..|.++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..+...+..+...
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHh
Q 028390          190 QREYAKYQAEIFGT  203 (209)
Q Consensus       190 ~~~~~~~~~~~~~~  203 (209)
                      ++++.+... .|.+
T Consensus        91 ~g~~~eA~~-~~~~  103 (159)
T d1a17a_          91 LGKFRAALR-DYET  103 (159)
T ss_dssp             TTCHHHHHH-HHHH
T ss_pred             cCCHHHHHH-HHHH
Confidence            887776543 3443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=9.7e-13  Score=89.70  Aligned_cols=83  Identities=13%  Similarity=0.120  Sum_probs=73.4

Q ss_pred             HHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          110 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       110 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      ..+-++|.+++..|+|++|+..|+++++++|+++.+++++|.||..+|+|++|+.+++++++++|.+......++.+..+
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999887666655555444


Q ss_pred             HHH
Q 028390          190 QRE  192 (209)
Q Consensus       190 ~~~  192 (209)
                      +..
T Consensus        85 lg~   87 (128)
T d1elra_          85 IGN   87 (128)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.7e-11  Score=99.57  Aligned_cols=111  Identities=10%  Similarity=-0.004  Sum_probs=82.1

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      +...|..+.+.|++..|+..|.+++...+                 ..++.++|.++...++|++|+.+|.+|+.++|++
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~-----------------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~  185 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCSYIC-----------------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN  185 (497)
T ss_dssp             --------------------CCHHHHHHH-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            44555555566666666666666665443                 2468999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 028390          143 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ  190 (209)
Q Consensus       143 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~  190 (209)
                      ..+|+.+|.++...|++.+|+.+|.+++.++|..+.+...|..+....
T Consensus       186 ~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         186 GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999998877654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.19  E-value=4.8e-11  Score=84.82  Aligned_cols=90  Identities=13%  Similarity=0.049  Sum_probs=79.6

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+..+.+.|..+++.|+|++|+..|+++|++.|..               ..+|+++|.++..+|++++|+..+.++++
T Consensus        75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1          75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---------------TKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh---------------hhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            446667889999999999999999999999987664               45899999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEKA  162 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~A  162 (209)
                      ++|++..+...++.++..+....++
T Consensus       140 l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         140 IAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888777665554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=7.4e-10  Score=85.09  Aligned_cols=131  Identities=11%  Similarity=0.016  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      ...+..+...|+.+...|+|++|+..|.+|+.+......         ....+.+|.++|.||..+|++++|+..+.+++
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~---------~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~  104 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN---------EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI  104 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence            445778889999999999999999999999998765433         13346789999999999999999999999999


Q ss_pred             hhCCCc------hHHHHHHHHHHhc-cCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHHHHH
Q 028390          137 ELEPLN------VKALYRRSQAHLK-TSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       137 ~~~p~~------~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~l~~~~~~~~~~  196 (209)
                      .+.+..      ..++.++|.++.. .|++++|+..|++++++.+.+      ..+...+..+...++.+.+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A  177 (290)
T d1qqea_         105 QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (290)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHH
Confidence            875444      5678888888854 699999999999998874422      33355566666666655544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.14  E-value=3.1e-10  Score=80.51  Aligned_cols=89  Identities=16%  Similarity=0.119  Sum_probs=78.1

Q ss_pred             HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           58 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        58 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..+..+.+.|.++++.|+|.+|+..|++++.+.|..               ..+|+++|.++..+|+|++|+.+|.+++.
T Consensus        62 ~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~---------------~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          62 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN---------------EKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345567789999999999999999999999997664               45899999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHHHhccCCHHH
Q 028390          138 LEPLNVKALYRRSQAHLKTSELEK  161 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~~~~~~~~~~  161 (209)
                      ++|++..+...++.+...++...+
T Consensus       127 l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         127 VNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHhHHH
Confidence            999999999998888776665543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.14  E-value=1.2e-10  Score=81.46  Aligned_cols=84  Identities=13%  Similarity=0.028  Sum_probs=75.2

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .+..+.+.|..+++.|+|++|+..|.++|.+.|..               ..+|+++|.++..+|+|++|+.++.+++++
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~---------------~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---------------VKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchh---------------hhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35567789999999999999999999999997664               458999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHhccC
Q 028390          139 EPLNVKALYRRSQAHLKTS  157 (209)
Q Consensus       139 ~p~~~~~~~~~a~~~~~~~  157 (209)
                      +|++..+...++.+..+++
T Consensus       131 ~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         131 NPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999988888776554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.6e-10  Score=80.36  Aligned_cols=89  Identities=15%  Similarity=0.080  Sum_probs=79.3

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhC
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE  139 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  139 (209)
                      +..+...|..+++.|+|++|+..+.++|.+.|..               ..++.++|.|+..+|+|++|+.+|.+++.++
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~---------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNN---------------EKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccc---------------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            4556789999999999999999999999997764               4589999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhccCCHHHHH
Q 028390          140 PLNVKALYRRSQAHLKTSELEKAE  163 (209)
Q Consensus       140 p~~~~~~~~~a~~~~~~~~~~~A~  163 (209)
                      |++..+...++.+...+++.....
T Consensus       127 P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         127 PNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988777666543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=1.7e-09  Score=83.00  Aligned_cols=112  Identities=14%  Similarity=0.069  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh-hcCHHHHHHHHHHH
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKV  135 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a  135 (209)
                      ...+..+.+.|..+...|++++|+..|.+++.+.+.....         .....++.++|.++.. .|++++|+..+.++
T Consensus        74 ~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A  144 (290)
T d1qqea_          74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELA  144 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc---------hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999999999998876552         3456678999988865 69999999999999


Q ss_pred             hhhCCC------chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 028390          136 LELEPL------NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR  177 (209)
Q Consensus       136 l~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~  177 (209)
                      +.+.+.      ...++.++|.++..+|+|++|+..|++++...|.++
T Consensus       145 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            977432      256689999999999999999999999999988764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=1.3e-09  Score=85.08  Aligned_cols=118  Identities=14%  Similarity=0.042  Sum_probs=101.0

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcC--HHHHHHHHHHHhh
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED--YSETSSLCTKVLE  137 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~  137 (209)
                      ...+...|......|.+.+|+..|.+++...|...               .++.++|.++..+++  +++|+..+.+++.
T Consensus        73 l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  137 (334)
T d1dcea1          73 LQHLETEKSPEESAALVKAELGFLESCLRVNPKSY---------------GTWHHRCWLLSRLPEPNWARELELCARFLE  137 (334)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcH---------------HHHHHhhHHHHHhccccHHHHHHHHHHHHh
Confidence            34445556667777889999999999999876654               468899988887765  8999999999999


Q ss_pred             hCCCchHHH-HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          138 LEPLNVKAL-YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       138 ~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      .+|.+..++ +.+|.++...+.++.|+..++++++++|.+..++..+..+...++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~  193 (334)
T d1dcea1         138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  193 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred             hCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence            999998886 5788999999999999999999999999999999999999877654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.99  E-value=1.7e-09  Score=74.87  Aligned_cols=75  Identities=15%  Similarity=0.113  Sum_probs=67.1

Q ss_pred             HHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhcc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 028390          118 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKT----------SELEKAEADIKRALTIDPNNRVVKLVYMELK  187 (209)
Q Consensus       118 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----------~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~  187 (209)
                      .+.+++.|++|+..++++++++|+++.+++++|.++..+          +.+++|+..|+++++++|++..+...+..+.
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            356788899999999999999999999999999999855          4568999999999999999999999999988


Q ss_pred             HHHHH
Q 028390          188 DKQRE  192 (209)
Q Consensus       188 ~~~~~  192 (209)
                      ..+..
T Consensus        86 ~~~g~   90 (145)
T d1zu2a1          86 TSFAF   90 (145)
T ss_dssp             HHHHH
T ss_pred             HHccc
Confidence            76643

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=5.6e-09  Score=69.43  Aligned_cols=83  Identities=18%  Similarity=0.145  Sum_probs=72.1

Q ss_pred             HHHhHHHHHHHhh---cCHHHHHHHHHHHhhhCCCc-hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 028390          110 SCYLNNAACKLKL---EDYSETSSLCTKVLELEPLN-VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME  185 (209)
Q Consensus       110 ~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~  185 (209)
                      ...++.|+|..+-   .+..+|+..++.++..+|.+ .+.+|.+|.+|+++|++++|..+++++++++|+|..+......
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~  115 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  115 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence            4567777777754   56679999999999999876 5899999999999999999999999999999999999988888


Q ss_pred             HHHHHHH
Q 028390          186 LKDKQRE  192 (209)
Q Consensus       186 l~~~~~~  192 (209)
                      |.+++.+
T Consensus       116 Ie~~~~k  122 (124)
T d2pqrb1         116 VEDKIQK  122 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            8776653

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.2e-09  Score=72.09  Aligned_cols=84  Identities=13%  Similarity=0.026  Sum_probs=69.0

Q ss_pred             HHHHHHHhHHHHHcC---CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHh
Q 028390           60 CERKKHDGNLLFRAG---KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        60 a~~~~~~g~~~~~~~---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al  136 (209)
                      +...++.|..+++.+   ++.+|+..|.+++...+..             ....+++++|.+|..+|+|++|+.++++++
T Consensus        33 ~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~-------------~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL   99 (122)
T d1nzna_          33 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-------------EQRDYVFYLAVGNYRLKEYEKALKYVRGLL   99 (122)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCc-------------hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            456788899988755   4567999999999865432             234589999999999999999999999999


Q ss_pred             hhCCCchHHHHHHHHHHhcc
Q 028390          137 ELEPLNVKALYRRSQAHLKT  156 (209)
Q Consensus       137 ~~~p~~~~~~~~~a~~~~~~  156 (209)
                      +++|++..+...++.+..++
T Consensus       100 ~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_         100 QTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHCTTCHHHHHHHHHHHHHH
T ss_pred             HhCcCCHHHHHHHHHHHHHH
Confidence            99999999988888766543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=1.7e-09  Score=84.38  Aligned_cols=109  Identities=6%  Similarity=-0.226  Sum_probs=91.7

Q ss_pred             HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHH
Q 028390           66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA  145 (209)
Q Consensus        66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  145 (209)
                      ....+...+.+..|...|.+++...|....               .+.+++.++...+++.+|+..+.+++..+|.+..+
T Consensus       214 ~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~---------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  278 (334)
T d1dcea1         214 LVQNAFFTDPNDQSAWFYHRWLLGRAEPLF---------------RCELSVEKSTVLQSELESCKELQELEPENKWCLLT  278 (334)
T ss_dssp             HHHHHHHHCSSCSHHHHHHHHHHSCCCCSS---------------SCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHhCcchhh---------------HHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHH
Confidence            334445556667777777877776655444               47889999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          146 LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       146 ~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      ++.+|.++..+|++++|+.+|+++++++|.+...+..+....-.
T Consensus       279 ~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         279 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence            99999999999999999999999999999998888877655443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=5.1e-08  Score=74.68  Aligned_cols=105  Identities=10%  Similarity=0.005  Sum_probs=88.7

Q ss_pred             HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh
Q 028390           59 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL  138 (209)
Q Consensus        59 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  138 (209)
                      .++...-+|..++..|++++|+..|.+++...|....          .....++.++|.++..+|++++|+..+.+++.+
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~----------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   80 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----------YSRIVATSVLGEVLHCKGELTRSLALMQQTEQM   80 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCc----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3445555799999999999999999999998776442          335668999999999999999999999999987


Q ss_pred             CCCc------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 028390          139 EPLN------VKALYRRSQAHLKTSELEKAEADIKRALTID  173 (209)
Q Consensus       139 ~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~  173 (209)
                      .+..      ..+++.++.++...|++..|...+.+++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          81 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5432      4678899999999999999999999998763

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.72  E-value=7.1e-09  Score=68.74  Aligned_cols=45  Identities=29%  Similarity=0.448  Sum_probs=41.0

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcC-CCCCCceEEEEEEEcccccC
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSE-LVSADSVLHYEVTLIDFTKE   45 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~-~ip~~~~l~~~~~l~~~~~~   45 (209)
                      .+|++||+++|.|.|++ ||..|.++ .||||++|.|+|+|++++++
T Consensus        69 ~~M~~Ge~~~v~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~ka  115 (115)
T d1kt1a3          69 EKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKA  115 (115)
T ss_dssp             TTCCTTCEEEEEECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEECC
T ss_pred             ccchhhceeEEEeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEEeC
Confidence            47999999999999999 99999765 69999999999999998753

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=2.4e-08  Score=76.54  Aligned_cols=104  Identities=14%  Similarity=0.039  Sum_probs=88.0

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhh-
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-  138 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-  138 (209)
                      +..+...|..+...|+++.|...+.+++...+.....           ....+.++|.++..+|++++|+..+++++.. 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  281 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-----------LQGQWRNIARAQILLGEFEPAEIVLEELNENA  281 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG-----------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4456678888999999999999999998876554432           3456788999999999999999999999843 


Q ss_pred             -----CCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 028390          139 -----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP  174 (209)
Q Consensus       139 -----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p  174 (209)
                           .|....+++.+|.+|..+|++++|...+++++++.+
T Consensus       282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         282 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                 466688999999999999999999999999998854

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.67  E-value=2.5e-08  Score=69.39  Aligned_cols=84  Identities=15%  Similarity=0.101  Sum_probs=66.7

Q ss_pred             hHHHHHHHhhcCHHHHHHHHHHHhhhCCCc------------hHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-----
Q 028390          113 LNNAACKLKLEDYSETSSLCTKVLELEPLN------------VKALYRRSQAHLKTSELEKAEADIKRALTIDPN-----  175 (209)
Q Consensus       113 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~-----  175 (209)
                      ...|..++..|+|++|+..|++++++.|..            ..+|.++|.||..+|++++|+.++.+++++.|.     
T Consensus        13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~   92 (156)
T d2hr2a1          13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   92 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence            344888999999999999999999998764            357899999999999999999999999987542     


Q ss_pred             --C----HHHHHHHHHHHHHHHHHHHH
Q 028390          176 --N----RVVKLVYMELKDKQREYAKY  196 (209)
Q Consensus       176 --~----~~~~~~l~~l~~~~~~~~~~  196 (209)
                        .    ..+...+..+...+.+..+.
T Consensus        93 ~~~~~~~~~a~~~~g~~~~~lg~~eeA  119 (156)
T d2hr2a1          93 QDEGKLWISAVYSRALALDGLGRGAEA  119 (156)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccccchhHHHHhhhHHHHHHHHHHHHH
Confidence              1    22445566777766666544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.67  E-value=3.2e-08  Score=75.05  Aligned_cols=87  Identities=9%  Similarity=-0.052  Sum_probs=73.4

Q ss_pred             HhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHH
Q 028390           66 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA  145 (209)
Q Consensus        66 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  145 (209)
                      ++...+..|++++|+..|.++|+..|.+.               .++.+++.++...|++++|+..++.+++++|++..+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~---------------~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~   66 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDA---------------SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   66 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH
Confidence            35678889999999999999999977754               479999999999999999999999999999998888


Q ss_pred             HHHHHHHHhccCCHHHHHHHHH
Q 028390          146 LYRRSQAHLKTSELEKAEADIK  167 (209)
Q Consensus       146 ~~~~a~~~~~~~~~~~A~~~~~  167 (209)
                      +..++.++...+..+++...+.
T Consensus        67 ~~~l~~ll~a~~~~~~a~~~~~   88 (264)
T d1zbpa1          67 ASQLRHLVKAAQARKDFAQGAA   88 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHhccccHHHHHHhh
Confidence            8888777776666665544433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=2.4e-07  Score=71.17  Aligned_cols=127  Identities=11%  Similarity=0.041  Sum_probs=84.7

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN  142 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~  142 (209)
                      +...+......|+++.|...|.+++...|.+..              .+|...+......|+++.|+..+.+++...|.+
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~--------------~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~  167 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChH--------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Confidence            345566666788999999999998887555432              245666666667777777777777777777777


Q ss_pred             hHHHHHHHHHH-hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          143 VKALYRRSQAH-LKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       143 ~~~~~~~a~~~-~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      ...+...|... ...|+.+.|...|++++...|+++..+..+.......++..+ -+..|.+.
T Consensus       168 ~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~-aR~~fe~a  229 (308)
T d2onda1         168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN-TRVLFERV  229 (308)
T ss_dssp             THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHH-HHHHHHHH
Confidence            77776666543 345677777777777777777777777666666555544432 24455544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.1e-07  Score=78.20  Aligned_cols=87  Identities=15%  Similarity=-0.004  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHH
Q 028390           56 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV  135 (209)
Q Consensus        56 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  135 (209)
                      .......+...|+.+...|+|++|+.+|.+|+.+.|+.+.               +|+++|.++...|++.+|+.+|.++
T Consensus       148 ~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~---------------~~~~Lg~~~~~~~~~~~A~~~y~ra  212 (497)
T d1ya0a1         148 SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ---------------PYNQLAILASSKGDHLTTIFYYCRS  212 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH---------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchH---------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444567889999999999999999999999999888765               7999999999999999999999999


Q ss_pred             hhhCCCchHHHHHHHHHHhccC
Q 028390          136 LELEPLNVKALYRRSQAHLKTS  157 (209)
Q Consensus       136 l~~~p~~~~~~~~~a~~~~~~~  157 (209)
                      +..+|+.+.++.+++.++.+..
T Consensus       213 l~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         213 IAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HhCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999887554

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.60  E-value=1.5e-08  Score=66.61  Aligned_cols=42  Identities=31%  Similarity=0.472  Sum_probs=35.8

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDF   42 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~   42 (209)
                      +.|++||.++|.|.+++ ||+.|..+.||||++|.|+|+|+++
T Consensus        68 ~~M~~Ge~~~~~ip~~layG~~g~~~~IPp~s~lif~ieLl~i  110 (111)
T d1kt1a2          68 ATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF  110 (111)
T ss_dssp             TTCCTTCCEEEEC----CCCTTTCTTTSCTTCCCEEEEEEEEE
T ss_pred             hhccCCcEEEEEECHHHhCCCCCCCCcCCcCCeEEEEEEEEEE
Confidence            47999999999999999 9999988899999999999999876

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.59  E-value=2.7e-08  Score=66.13  Aligned_cols=43  Identities=28%  Similarity=0.439  Sum_probs=40.3

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEcccc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFT   43 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~   43 (209)
                      ..|++||.+.|.|.|++ ||+.|+++.|||++.|.|+|+|+++.
T Consensus        74 ~~M~~Ge~~~~~ipp~laYG~~g~~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          74 ATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             TTCCBTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             eeecCCceEEEEECHHHhCCcCCCCCccCcCCcEEEEEEEEEEe
Confidence            47999999999999999 99999888999999999999999873

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.1e-08  Score=65.78  Aligned_cols=46  Identities=28%  Similarity=0.440  Sum_probs=41.6

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcC-CCCCCceEEEEEEEcccccCC
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSE-LVSADSVLHYEVTLIDFTKEK   46 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~-~ip~~~~l~~~~~l~~~~~~~   46 (209)
                      +.|++||++++.|.+++ ||..|++. .|||++++.|+|+|+.+.+..
T Consensus        69 ~~M~~Ge~~~i~ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          69 QRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred             hcchhhCeEEEEECHHHhCcccCCCCCccCcCCeEEEEEEEEEEEeCC
Confidence            47999999999999999 99999654 799999999999999998654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.57  E-value=2e-07  Score=70.48  Aligned_cols=76  Identities=9%  Similarity=0.085  Sum_probs=68.7

Q ss_pred             HHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 028390          117 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE  192 (209)
Q Consensus       117 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~  192 (209)
                      .-.+..|++++|+..+.++++.+|.+..++..+|.+|...|++++|+..|+++++++|++..+...+..+......
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~   79 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA   79 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc
Confidence            3456889999999999999999999999999999999999999999999999999999999998888777654433

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=4.1e-08  Score=64.10  Aligned_cols=42  Identities=21%  Similarity=0.432  Sum_probs=39.6

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDF   42 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~   42 (209)
                      ..|++||+++|.|.+++ ||..|.+..||||++|.|+++|+.+
T Consensus        64 ~~M~~Ge~~~~~ip~~laYG~~g~~~~IPp~s~lif~ieL~~v  106 (107)
T d2ppna1          64 AQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             cCccCCCEEEEEECHHHhCCCCCCCCCCCcCCeEEEEEEEEEE
Confidence            47999999999999999 9999988889999999999999876

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4e-08  Score=65.47  Aligned_cols=43  Identities=30%  Similarity=0.441  Sum_probs=40.7

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEcccc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFT   43 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~   43 (209)
                      +.|++||.++|.|.+++ ||+.|+++.|||+++|.|+|+|+++.
T Consensus        75 ~~M~~Ge~~~~~ip~~laYG~~g~~~~IPp~s~LifeIeLl~v~  118 (120)
T d1q1ca1          75 ATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK  118 (120)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             ccccCCcEEEEEECHHHhCCCcCCCCCCCcCCcEEEEEEEEEEe
Confidence            47999999999999999 99999989999999999999999875

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=9.8e-07  Score=67.68  Aligned_cols=128  Identities=12%  Similarity=0.002  Sum_probs=99.8

Q ss_pred             HHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHH-HhhcCHHHHHHHHHHHhhhCCC
Q 028390           63 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK-LKLEDYSETSSLCTKVLELEPL  141 (209)
Q Consensus        63 ~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~  141 (209)
                      +...+....+.|.++.|...|.+++...|....               .+...|... ...|+.+.|...+++++..+|+
T Consensus       137 w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~---------------~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~  201 (308)
T d2onda1         137 YIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---------------VYVTAALMEYYCSKDKSVAFKIFELGLKKYGD  201 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH---------------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh
Confidence            456677777889999999999999998766543               466666654 3468999999999999999999


Q ss_pred             chHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028390          142 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR----VVKLVYMELKDKQREYAKYQAEIFGTMLS  206 (209)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~----~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  206 (209)
                      ++..+...+......|+++.|...|++++...|.++    .+...+.......+..... .+.++++.+
T Consensus       202 ~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~-~~~~~r~~~  269 (308)
T d2onda1         202 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI-LKVEKRRFT  269 (308)
T ss_dssp             CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Confidence            999999999999999999999999999999877553    4666666665544443333 345665543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.52  E-value=7.4e-07  Score=63.35  Aligned_cols=96  Identities=8%  Similarity=0.000  Sum_probs=82.0

Q ss_pred             HHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCc----------------------hHHHHHHHHHHhccCCHHHHHHH
Q 028390          108 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN----------------------VKALYRRSQAHLKTSELEKAEAD  165 (209)
Q Consensus       108 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~  165 (209)
                      ....+.+.|......|++++|+..|.+++.+.+..                      ..++.+++.++..+|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            45578899999999999999999999999986533                      26789999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028390          166 IKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM  204 (209)
Q Consensus       166 ~~~a~~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  204 (209)
                      +++++.++|.+..++..+..+....+...+.-+ .|.++
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~-~y~~~  127 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALG-AYRRV  127 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH-HHHHH
Confidence            999999999999999999999888777665533 44443

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=7.8e-08  Score=63.36  Aligned_cols=41  Identities=24%  Similarity=0.447  Sum_probs=39.0

Q ss_pred             CCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccc
Q 028390            2 TMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDF   42 (209)
Q Consensus         2 ~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~   42 (209)
                      .|++||.++|.|.+++ ||..|.+..|||+++|.|+++|+.+
T Consensus        71 ~M~~G~~~~~~iP~~laYG~~g~~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          71 KLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             GCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             cccCCCEEEEEechHHeecCcCCCCccCcCCeEEEEEEEEEe
Confidence            6999999999999999 9999988889999999999999876

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.44  E-value=1.9e-07  Score=65.29  Aligned_cols=47  Identities=15%  Similarity=0.211  Sum_probs=42.6

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEcccccCCC
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDFTKEKP   47 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~~~~~~   47 (209)
                      ..|++||.++|.|.|++ ||..|....||||++|.|+|+|+.+.....
T Consensus        96 ~~M~~Ge~~~v~iPp~laYG~~g~~~~IPp~s~LifeIeLl~i~~~~~  143 (160)
T d1jvwa_          96 QLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGK  143 (160)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGGCC
T ss_pred             cCccccceeEEEeCHHHCcCCCCCCCCcCcCCcEEEEEEEEEEecCCC
Confidence            47999999999999999 999998888999999999999999975433

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.7e-07  Score=61.96  Aligned_cols=42  Identities=29%  Similarity=0.492  Sum_probs=38.6

Q ss_pred             CCCCCccEEEEEeCccc-ccccCCc-CCCCCCceEEEEEEEccc
Q 028390            1 MTMKKEEQATVTISAEY-LCSHEVS-ELVSADSVLHYEVTLIDF   42 (209)
Q Consensus         1 ~~m~~ge~~~~~~~~~~-~~~~~~~-~~ip~~~~l~~~~~l~~~   42 (209)
                      .+|++||.+.|.|.+++ ||+.|.+ ..|||+++|.|+|+|+++
T Consensus        72 ~~M~~Ge~~~~~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~v  115 (116)
T d1pbka_          72 LTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI  115 (116)
T ss_dssp             TTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             hhhcCCcEEEEEECHHHhCCccCCCCCCcCcCCeEEEEEEEEEE
Confidence            47999999999999999 9999964 579999999999999876

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=7.1e-06  Score=54.12  Aligned_cols=78  Identities=18%  Similarity=0.084  Sum_probs=62.0

Q ss_pred             HHHHHHhHHHHHcC---CHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhh
Q 028390           61 ERKKHDGNLLFRAG---KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE  137 (209)
Q Consensus        61 ~~~~~~g~~~~~~~---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  137 (209)
                      ..-++.|..+.++.   +.++|+..+..++...|..              ...+++++|..|.++|+|+.|..+++++|+
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~--------------~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh--------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            34567777777664   4568999999988765443              235799999999999999999999999999


Q ss_pred             hCCCchHHHHHHHHH
Q 028390          138 LEPLNVKALYRRSQA  152 (209)
Q Consensus       138 ~~p~~~~~~~~~a~~  152 (209)
                      ++|+|..+...+..+
T Consensus       102 ieP~n~qA~~L~~~I  116 (124)
T d2pqrb1         102 HERNNKQVGALKSMV  116 (124)
T ss_dssp             HCTTCHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHH
Confidence            999999887665544

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.06  E-value=1.2e-06  Score=58.56  Aligned_cols=41  Identities=24%  Similarity=0.314  Sum_probs=36.9

Q ss_pred             CCCCccEEEEEeCccc-ccccCC-----cCCCCCCceEEEEEEEccc
Q 028390            2 TMKKEEQATVTISAEY-LCSHEV-----SELVSADSVLHYEVTLIDF   42 (209)
Q Consensus         2 ~m~~ge~~~~~~~~~~-~~~~~~-----~~~ip~~~~l~~~~~l~~~   42 (209)
                      .|++||.++|.|.+++ ||+.|.     ...|||++.|.|+|+|+.+
T Consensus        78 ~M~~G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          78 PMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             CCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             cccCCCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            6999999999999999 999883     4559999999999999865

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.86  E-value=0.00026  Score=52.10  Aligned_cols=96  Identities=15%  Similarity=0.109  Sum_probs=78.3

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh----hcCHHHHHHHHHHH
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLCTKV  135 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a  135 (209)
                      +..+...|..++..+++.+|+.+|.+|.+..  +               ..++.++|.+|..    ..++..|+.++..+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~---------------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK--E---------------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--C---------------HHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            3567889999999999999999999998752  1               3478999999987    67899999999887


Q ss_pred             hhhCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCC
Q 028390          136 LELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDP  174 (209)
Q Consensus       136 l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~l~p  174 (209)
                      ...+  ++.+.+.+|.++..    ..+.+.|...++.+.+..+
T Consensus        65 ~~~~--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~  105 (265)
T d1ouva_          65 CDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY  105 (265)
T ss_dssp             HHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             cccc--ccchhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            6554  67778888887765    4688899999999887654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.54  E-value=0.00065  Score=44.88  Aligned_cols=81  Identities=9%  Similarity=-0.029  Sum_probs=49.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHh----hcCHHHHHHHHHHHhhhCCCchHHHHHH
Q 028390           74 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLCTKVLELEPLNVKALYRR  149 (209)
Q Consensus        74 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~  149 (209)
                      .++++|+..|.++.+...                 ..+.+++|.+|..    ..++++|+.++.++.+.  .++.+.+++
T Consensus        37 ~~~~~a~~~~~~aa~~g~-----------------~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~L   97 (133)
T d1klxa_          37 INKQKLFQYLSKACELNS-----------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLIL   97 (133)
T ss_dssp             SCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             cCHHHHHHHHhhhhcccc-----------------hhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHH
Confidence            455666666666655311                 2356667766654    34567777777777654  346667777


Q ss_pred             HHHHhc----cCCHHHHHHHHHHHHhcC
Q 028390          150 SQAHLK----TSELEKAEADIKRALTID  173 (209)
Q Consensus       150 a~~~~~----~~~~~~A~~~~~~a~~l~  173 (209)
                      |.+|..    ..++.+|..+|+++.++.
T Consensus        98 g~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          98 GYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            777665    346777777777776543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.43  E-value=0.0017  Score=42.74  Aligned_cols=93  Identities=15%  Similarity=0.005  Sum_probs=73.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHH
Q 028390           74 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAH  153 (209)
Q Consensus        74 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~  153 (209)
                      .++++|+.+|.++.+..  ++.               +..+++.  ....++++|+..+.++.+.  .++.+.+.+|..|
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~---------------a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y   65 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMF---------------GCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFY   65 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTT---------------HHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chh---------------hhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhh
Confidence            47899999999998752  222               3555553  4567899999999999775  5789999999998


Q ss_pred             hc----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 028390          154 LK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK  189 (209)
Q Consensus       154 ~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~  189 (209)
                      ..    ..++++|+.+|+++.+.  .++.+...|..+...
T Consensus        66 ~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          66 ENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             hhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence            86    56899999999999875  467788888877654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.42  E-value=0.00056  Score=50.23  Aligned_cols=74  Identities=15%  Similarity=0.166  Sum_probs=59.4

Q ss_pred             HHHHhHHHHHHHh----hcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCHHHH
Q 028390          109 LSCYLNNAACKLK----LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVK  180 (209)
Q Consensus       109 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~  180 (209)
                      ..+.+++|.+|..    .++++.|+.+|.++.+.+  ++.+++++|.+|..    ..++++|..+|+++..+.  +..+.
T Consensus       178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g--~~~A~  253 (265)
T d1ouva_         178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AKGAC  253 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CHHHH
T ss_pred             cccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc--CHHHH
Confidence            4578999999987    678999999999998874  68899999999986    448999999999998765  34455


Q ss_pred             HHHHHH
Q 028390          181 LVYMEL  186 (209)
Q Consensus       181 ~~l~~l  186 (209)
                      ..+..+
T Consensus       254 ~~l~~l  259 (265)
T d1ouva_         254 DILKQL  259 (265)
T ss_dssp             HHHHTC
T ss_pred             HHHHHH
Confidence            554443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.02  E-value=0.077  Score=31.18  Aligned_cols=38  Identities=21%  Similarity=0.243  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcC
Q 028390           57 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH   94 (209)
Q Consensus        57 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~   94 (209)
                      ++.|..+-..++.+.+.|.|++||+++.+|+..+....
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~   42 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAM   42 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            56788888999999999999999999999999876643

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.53  E-value=0.39  Score=29.02  Aligned_cols=38  Identities=13%  Similarity=0.059  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390           55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   92 (209)
Q Consensus        55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~   92 (209)
                      .....|..+...|..+-..|+|++|+.+|..||.++-.
T Consensus        10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34566888899999999999999999999999988765

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.32  E-value=0.2  Score=37.95  Aligned_cols=50  Identities=12%  Similarity=-0.025  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 028390          144 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY  193 (209)
Q Consensus       144 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~l~~~~~~~  193 (209)
                      .-.-.....|...|.++..+.+++.++.+++.+..+...+..+..+....
T Consensus       100 d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~  149 (336)
T d1b89a_         100 DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ  149 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhChH
Confidence            33445667788888899999999988888888888888887777655443

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=91.44  E-value=0.073  Score=31.79  Aligned_cols=36  Identities=19%  Similarity=0.272  Sum_probs=30.8

Q ss_pred             CCCCccEEEEEeCccc-ccccCCcCCCCCCceEEEEEEEccc
Q 028390            2 TMKKEEQATVTISAEY-LCSHEVSELVSADSVLHYEVTLIDF   42 (209)
Q Consensus         2 ~m~~ge~~~~~~~~~~-~~~~~~~~~ip~~~~l~~~~~l~~~   42 (209)
                      -|++||+.+|.+..+. |+..+     ++|.++.|+|++..+
T Consensus        48 g~~~Ge~~~~~i~~p~~y~~~~-----laGk~~~f~V~v~~V   84 (85)
T d1hxva_          48 AMKVNQKKTLALTFPSDYHVKE-----LQSKPVTFEVVLKAI   84 (85)
T ss_dssp             TSCSSEEEEECCCCCTTSSSSG-----GGSCCCEEEEEECCB
T ss_pred             cCcCCCeEEEEEEChhhcCccc-----CCCCcEEEEEEEEEe
Confidence            4899999999999998 88755     457789999999875

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.36  E-value=0.11  Score=30.35  Aligned_cols=38  Identities=16%  Similarity=0.165  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390           55 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   92 (209)
Q Consensus        55 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~   92 (209)
                      ..+..+..+...|..+-..|+|..|+.+|..|+..+-.
T Consensus         6 ~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~   43 (77)
T d1wr0a1           6 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   43 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            44567888889999999999999999999999987543

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.95  E-value=2.7  Score=25.16  Aligned_cols=41  Identities=15%  Similarity=0.152  Sum_probs=33.8

Q ss_pred             CHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhh
Q 028390           52 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF   92 (209)
Q Consensus        52 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~   92 (209)
                      ..+........-...|..++..|++++|+.+|.+||.+.+.
T Consensus        12 D~~~~e~~Fl~eV~lGE~Ll~~G~~~~g~~h~~nAi~Vc~q   52 (95)
T d1om2a_          12 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ   52 (95)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC
Confidence            33444555667778999999999999999999999998776

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=81.67  E-value=4.7  Score=25.80  Aligned_cols=60  Identities=13%  Similarity=0.078  Sum_probs=41.4

Q ss_pred             HhHHHHHHH-hhcCHHHHHHHHHHHhhhCCCchHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 028390          112 YLNNAACKL-KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT  171 (209)
Q Consensus       112 ~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  171 (209)
                      |.++|.-++ ..|+-++--..+...+.....++..+..+|.+|.+.|...+|...+++|-+
T Consensus        88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe  148 (161)
T d1wy6a1          88 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK  148 (161)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            344444433 344444444445555666677899999999999999999999999988865

>d2ijqa1 a.246.2.1 (A:14-158) Hypothetical protein rrnAC1037 {Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Hyaluronidase domain-like
superfamily: TTHA0068-like
family: TTHA0068-like
domain: Hypothetical protein rrnAC1037
species: Haloarcula marismortui [TaxId: 2238]

Probab=81.56  E-value=5  Score=26.00  Aligned_cols=70  Identities=19%  Similarity=0.206  Sum_probs=48.1

Q ss_pred             HHHHHHHhHHHHHcCCHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh--HHHHH-HHhhcCHHHHHHHHHHHh
Q 028390           60 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYL--NNAAC-KLKLEDYSETSSLCTKVL  136 (209)
Q Consensus        60 a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~-~~~~~~~~~A~~~~~~al  136 (209)
                      .+.-...|..+|..|+|-+|.+.+.....-.+...    .+     ......+.  .-|.+ +.+.|+...|...+.+++
T Consensus        17 ~~~a~~~Gi~lfN~g~y~eaHE~lEe~W~~~~~~~----~e-----r~~~QGLIQ~Aaa~~hh~~~gN~~GA~~l~~~al   87 (145)
T d2ijqa1          17 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGN----TE-----SKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL   87 (145)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSS----HH-----HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC----hH-----HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            34557899999999999999999998876433211    11     11122233  33334 368899999999999998


Q ss_pred             hh
Q 028390          137 EL  138 (209)
Q Consensus       137 ~~  138 (209)
                      ..
T Consensus        88 ~~   89 (145)
T d2ijqa1          88 QY   89 (145)
T ss_dssp             HH
T ss_pred             HH
Confidence            64