Citrus Sinensis ID: 028411

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
MLRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQVFKGIADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQPEIIGVSF
ccccHHHHccHHHHHHccccEEEcccccccEEEcccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHcccccEEcccccEEEccEEEEEccccEEccEEEEEEEEEEEccHHHHcccccccccccHHccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHccHHHHHHHHccccccccccc
ccccccHHHcHHHHHHcccEEEEEEccccEEEEEcccEEEEEEEccccccccccccHHHHHHHHHccccccccccEEEcccccEEEccEEEcccHHHHccccEEEEcEEEEcccHHHHHHccccccccHHcccccHHHHHccHHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccEEccHHHHHHHHHccccEEEEcc
mlrkpselleigsvlrdqvpvmkrftgggtvvvdKGTVFVTLICnkddvpgvqpfprsimswsGLLYNQVFKGIAdfqlrendyvfgnrkfggnaqsitknrWIHHTSFLWDYAEGNMaflkqparapeyrmerGHTEFICRmneylprtdfIEKTTEAVETYFSVKnvnleateepcgaefvpstrllSKQELEEAlgtqpeiigvsf
mlrkpselleigsvlrdqvpvmkrftgggtvvvdKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQVFKGIADFQLRENDYVFGNRKFggnaqsitknrWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELeealgtqpeiigvsf
MLRKPSELLEIGSVLRDQVPVMKRFtgggtvvvdkgtvfvtLICNKDDVPGVQPFPRSIMSWSGLLYNQVFKGIADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQPEIIGVSF
********LEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQVFKGIADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKTTEAVETYFSVKNVNLEATEEPCGAEFV**************************
MLRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQVFKGIADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAF******************FICRMNEYLPRTDFIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQPEIIGVSF
MLRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQVFKGIADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQPEIIGVSF
**RKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQVFKGIADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPE*RMERGHTEFICRMNEYLPRTDFIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQPEIIGVSF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQVFKGIADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQPEIIGVSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query209
255582109267 lipoate-protein ligase, putative [Ricinu 0.980 0.767 0.717 3e-84
224141007267 predicted protein [Populus trichocarpa] 0.980 0.767 0.717 2e-83
186510553262 biotin/lipoate A/B protein ligase family 0.937 0.748 0.647 3e-77
147843384296 hypothetical protein VITISV_038033 [Viti 0.937 0.662 0.673 2e-76
225457393268 PREDICTED: probable lipoate-protein liga 0.928 0.723 0.675 6e-76
356531758262 PREDICTED: putative lipoate-protein liga 0.947 0.755 0.646 2e-75
297815204262 predicted protein [Arabidopsis lyrata su 0.952 0.759 0.638 2e-75
357501933265 Lipoate protein ligase-like protein [Med 0.928 0.732 0.63 2e-72
449439277271 PREDICTED: putative lipoate-protein liga 0.933 0.719 0.637 6e-71
293331753269 uncharacterized protein LOC100383290 [Ze 0.956 0.743 0.594 4e-66
>gi|255582109|ref|XP_002531849.1| lipoate-protein ligase, putative [Ricinus communis] gi|223528499|gb|EEF30527.1| lipoate-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  316 bits (810), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 147/205 (71%), Positives = 171/205 (83%)

Query: 4   KPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWS 63
           KPSELLEI  VLRD +PV++RFTGGGTV+VD GTVFVTLICNKDDVPGVQP+PRSIMSWS
Sbjct: 62  KPSELLEIEPVLRDHIPVIRRFTGGGTVIVDSGTVFVTLICNKDDVPGVQPYPRSIMSWS 121

Query: 64  GLLYNQVFKGIADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAFLKQ 123
           GLLYN+VF+GI DFQLRENDYVFG++KFGGNAQSI K RWIHHTSFLWDY   NMA+LK 
Sbjct: 122 GLLYNEVFQGIGDFQLRENDYVFGDKKFGGNAQSIIKRRWIHHTSFLWDYEVKNMAYLKL 181

Query: 124 PARAPEYRMERGHTEFICRMNEYLPRTDFIEKTTEAVETYFSVKNVNLEATEEPCGAEFV 183
           PARAP+YR  R HTEF+CRM EY  RT FIE+T +A++T+FSV+ +NLE         FV
Sbjct: 182 PARAPKYRSTRNHTEFVCRMKEYFSRTVFIERTLKALQTHFSVEPINLEGLGASHETGFV 241

Query: 184 PSTRLLSKQELEEALGTQPEIIGVS 208
           PST+LL+KQELE+A   QP+I+  S
Sbjct: 242 PSTKLLTKQELEDAWVLQPKIMACS 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224141007|ref|XP_002323867.1| predicted protein [Populus trichocarpa] gi|222866869|gb|EEF04000.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|186510553|ref|NP_189543.2| biotin/lipoate A/B protein ligase family protein [Arabidopsis thaliana] gi|7939551|dbj|BAA95754.1| lipoate protein ligase-like protein [Arabidopsis thaliana] gi|332643999|gb|AEE77520.1| biotin/lipoate A/B protein ligase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147843384|emb|CAN79982.1| hypothetical protein VITISV_038033 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225457393|ref|XP_002281967.1| PREDICTED: probable lipoate-protein ligase A [Vitis vinifera] gi|297733965|emb|CBI15212.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356531758|ref|XP_003534443.1| PREDICTED: putative lipoate-protein ligase A-like [Glycine max] Back     alignment and taxonomy information
>gi|297815204|ref|XP_002875485.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297321323|gb|EFH51744.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357501933|ref|XP_003621255.1| Lipoate protein ligase-like protein [Medicago truncatula] gi|355496270|gb|AES77473.1| Lipoate protein ligase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449439277|ref|XP_004137412.1| PREDICTED: putative lipoate-protein ligase A-like [Cucumis sativus] gi|449518213|ref|XP_004166137.1| PREDICTED: putative lipoate-protein ligase A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|293331753|ref|NP_001169421.1| uncharacterized protein LOC100383290 [Zea mays] gi|224029267|gb|ACN33709.1| unknown [Zea mays] gi|413932501|gb|AFW67052.1| hypothetical protein ZEAMMB73_024758 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query209
TAIR|locus:2087007262 AT3G29010 [Arabidopsis thalian 0.947 0.755 0.585 7.6e-64
DICTYBASE|DDB_G0269376283 DDB_G0269376 [Dictyostelium di 0.583 0.431 0.453 6.6e-26
TAIR|locus:2087007 AT3G29010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 116/198 (58%), Positives = 149/198 (75%)

Query:     1 MLRKPSELLEIGSVLRDQVPVMKRFXXXXXXXXXXXXXXXXLICNKDDVPGVQPFPRSIM 60
             M  KPS+LLE+G V+ D++PV+KRF                LICNKDDVP VQP+PRS+M
Sbjct:    58 MSGKPSQLLEVGPVMEDRIPVIKRFTGGGTVIVDKSTLFVSLICNKDDVPNVQPYPRSVM 117

Query:    61 SWSGLLYNQVFKGIADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMAF 120
             +WSG LY++VFK +  FQLRENDYVFG+RKFGGNAQSI KNRWIHHTSFLWDY   NMA+
Sbjct:   118 AWSGSLYDEVFKSVNGFQLRENDYVFGDRKFGGNAQSIIKNRWIHHTSFLWDYDVRNMAY 177

Query:   121 LKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKTTEAVETYFSVKNVNLEATEEPCGA 180
             LK P+R P+YR+ER HT+F+CRM +Y+ R+DF+EKT +AV   F++K VNLE  +     
Sbjct:   178 LKLPSRVPQYRLERDHTDFVCRMKDYIERSDFVEKTVKAVRNQFTLKQVNLEDIDSYAKG 237

Query:   181 EFVPSTRLLSKQELEEAL 198
              ++ +TRLL+ +ELEEA+
Sbjct:   238 GYLKTTRLLTMEELEEAM 255
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006464 "cellular protein modification process" evidence=IEA
DICTYBASE|DDB_G0269376 DDB_G0269376 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.1.181LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00170406
hypothetical protein (267 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.95250001
hypothetical protein (262 aa)
      • 0.404

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
COG0095248 COG0095, LplA, Lipoate-protein ligase A [Coenzyme 2e-16
pfam03099124 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B prote 5e-10
TIGR00545324 TIGR00545, lipoyltrans, lipoyltransferase and lipo 4e-08
>gnl|CDD|223173 COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism] Back     alignment and domain information 
 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 19/186 (10%)

Query: 16  RDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQVFK--- 72
            D +PV++R +GGG V  D G +  ++I   +          S  +    L   V     
Sbjct: 63  EDGIPVVRRPSGGGAVFHDLGNLNYSVITPDEG------GLESYETLYKFLLQPVIDALR 116

Query: 73  --GIADFQLR-ENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMA-FLKQPARAP 128
             G+   +    ND V   +K  G+AQ  TK R +HH + L D     +A  L+ P    
Sbjct: 117 ALGVEGAECPGRNDLVVDGKKISGSAQRRTKGRILHHGTLLLDIDLELLARVLRVPKEKI 176

Query: 129 EYRMERGHTEFICRMNEYLPRT--DFIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPST 186
           + +  +   E +  + E L  +  +F+E   EA      V+        E    E   + 
Sbjct: 177 KSKGIKSVRERVANLEELLKISVEEFLEALLEAFFKVLGVE----LEEYELTPEELELAE 232

Query: 187 RLLSKQ 192
           +L  ++
Sbjct: 233 KLAEEK 238

Length = 248
>gnl|CDD|217367 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein ligase family Back     alignment and domain information
>gnl|CDD|161920 TIGR00545, lipoyltrans, lipoyltransferase and lipoate-protein ligase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 209
PRK03822338 lplA lipoate-protein ligase A; Provisional 100.0
TIGR00545324 lipoyltrans lipoyltransferase and lipoate-protein 100.0
PRK14061562 unknown domain/lipoate-protein ligase A fusion pro 100.0
COG0095248 LplA Lipoate-protein ligase A [Coenzyme metabolism 100.0
KOG3159336 consensus Lipoate-protein ligase A [Coenzyme trans 99.97
PF03099125 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase f 99.81
PRK14348221 lipoate-protein ligase B; Provisional 98.52
PRK14344223 lipoate-protein ligase B; Provisional 98.35
PRK14343235 lipoate-protein ligase B; Provisional 98.27
PRK14345234 lipoate-protein ligase B; Provisional 98.2
TIGR00214184 lipB lipoate-protein ligase B. Involved in lipoate 98.18
PRK14342213 lipoate-protein ligase B; Provisional 98.17
COG0321221 LipB Lipoate-protein ligase B [Coenzyme metabolism 98.14
PRK14341213 lipoate-protein ligase B; Provisional 98.11
PRK14349220 lipoate-protein ligase B; Provisional 97.91
PRK14346230 lipoate-protein ligase B; Provisional 97.87
PRK14347209 lipoate-protein ligase B; Provisional 97.83
PRK08330236 biotin--protein ligase; Provisional 96.56
PRK08477211 biotin--protein ligase; Provisional 95.5
KOG0325226 consensus Lipoyltransferase [Energy production and 95.31
PTZ00275285 biotin-acetyl-CoA-carboxylase ligase; Provisional 94.24
PTZ00276245 biotin/lipoate protein ligase; Provisional 93.67
PRK05935190 biotin--protein ligase; Provisional 91.49
TIGR00121237 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] 90.83
PRK11886319 bifunctional biotin--[acetyl-CoA-carboxylase] synt 89.19
COG0340238 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenz 88.5
PRK13325 592 bifunctional biotin--[acetyl-CoA-carboxylase] liga 80.22
>PRK03822 lplA lipoate-protein ligase A; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.1e-45  Score=324.50  Aligned_cols=178  Identities=22%  Similarity=0.302  Sum_probs=154.1

Q ss_pred             CCCChhhhcchhhhhhCCCCEEEcccCCceeEecCCceEEEEEEeCCCCCCCCchhHHHHHHHHHhHHhHhcCc-ccccc
Q 028411            1 MLRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQVFKGI-ADFQL   79 (209)
Q Consensus         1 ~~~~~~~evnld~~~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~~~~~~~~~i~~~L~~l~~~~~~gv-~~~~~   79 (209)
                      +.++|++|||+++|+++||+||||+|||||||||+||+|||++.+... .++..++++|+++|+.|      |+ +.+. 
T Consensus        48 r~Qn~~~Evn~~~~~~~gI~vvRR~SGGGAVyhD~Gnl~~s~i~~~~~-~~~~~~~~~ii~aL~~l------Gi~a~~~-  119 (338)
T PRK03822         48 RAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPE-YDKTISTSIVLNALNSL------GVSAEAS-  119 (338)
T ss_pred             CCCCHHHHhCHHHHHHcCCcEEEECCCCceEEEcCCCcEEEEEeCCCc-cCHHHHHHHHHHHHHHc------CCceeEC-
Confidence            368999999999999999999999999999999999999999998644 35666789999999999      88 5565 


Q ss_pred             CcCcEEeC----CeEeeeeeeEEeCCEEEEEeEEeecccccccc-ccccccCCCccccccccccccccccccCC---chH
Q 028411           80 RENDYVFG----NRKFGGNAQSITKNRWIHHTSFLWDYAEGNMA-FLKQPARAPEYRMERGHTEFICRMNEYLP---RTD  151 (209)
Q Consensus        80 ~~~Di~v~----grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~-~L~~p~~k~~~k~v~s~~~~vt~L~e~l~---~~~  151 (209)
                      ++|||+++    |||||||||++.+++++||||||+++|++.|. +|+++++++.+|+++|+++|||||+++++   .+.
T Consensus       120 ~rnDi~v~~~~g~kKisGsAq~~~~~~~l~HGTlL~~~d~~~l~~~L~~~~~k~~skgv~Sv~srVtnl~~~~~~~~~e~  199 (338)
T PRK03822        120 GRNDLVVKTAEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLQAKGITSVRSRVTNLTELLPGITHEQ  199 (338)
T ss_pred             CCccEEEecCCCCcEEEEEeeeeeCCeEEEEEEEEecCCHHHHHHHhCCChhhhhhccccchHhhhccHHHhCCCCCHHH
Confidence            79999995    69999999999999999999999999999997 99999999999999999999999999886   345


Q ss_pred             HHHHHHHHHHHHcccCccccccccCcCCCCCCCccccCCHHHHHHHHhccc
Q 028411          152 FIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQP  202 (209)
Q Consensus       152 ~~e~l~~al~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  202 (209)
                      +.+.|.++|.+.|+.+                ..+|.||++||+.+.++..
T Consensus       200 ~~~~l~~~f~~~~~~~----------------~~~~~lt~~e~~~i~~l~~  234 (338)
T PRK03822        200 VCEAITEAFFAHYGER----------------VEAEVISPDKTPDLPGFAE  234 (338)
T ss_pred             HHHHHHHHHHHHhCCC----------------CCccccCHHHHHHHHHHHH
Confidence            5555555665555443                1457888999988887765

>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase Back     alignment and domain information
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional Back     alignment and domain information
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism] Back     alignment and domain information
>KOG3159 consensus Lipoate-protein ligase A [Coenzyme transport and metabolism] Back     alignment and domain information
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B Back     alignment and domain information
>PRK14348 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14344 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14343 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14345 lipoate-protein ligase B; Provisional Back     alignment and domain information
>TIGR00214 lipB lipoate-protein ligase B Back     alignment and domain information
>PRK14342 lipoate-protein ligase B; Provisional Back     alignment and domain information
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism] Back     alignment and domain information
>PRK14341 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14349 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14346 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14347 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK08330 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK08477 biotin--protein ligase; Provisional Back     alignment and domain information
>KOG0325 consensus Lipoyltransferase [Energy production and conversion; Coenzyme transport and metabolism] Back     alignment and domain information
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional Back     alignment and domain information
>PTZ00276 biotin/lipoate protein ligase; Provisional Back     alignment and domain information
>PRK05935 biotin--protein ligase; Provisional Back     alignment and domain information
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region Back     alignment and domain information
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional Back     alignment and domain information
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism] Back     alignment and domain information
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
2e5a_A347 Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 1e-22
1vqz_A341 Lipoate-protein ligase, putative; class II AARS an 5e-22
3a7r_A337 Lipoate-protein ligase A; adenylate-forming enzyme 2e-21
2c8m_A262 Lipoate-protein ligase A; lipoylation; HET: LPA; 1 7e-19
2p5i_A288 BH3822 protein; PFAM03099, structural genomics, PS 1e-11
2p0l_A288 Lipoate-protein ligase A; PFAM, lopoate-protein li 5e-11
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Length = 347 Back     alignment and structure
 Score = 92.3 bits (229), Expect = 1e-22
 Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 10/166 (6%)

Query: 16  RDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWSGLLYNQVFKGI- 74
            + V + +R +GGGTV  D G + +T    K     ++   + ++         V   + 
Sbjct: 65  EEGVKLARRRSGGGTVYHDMGNINLTFFTTKKKYDRME-NLKLVVRA----LKAVHPHLD 119

Query: 75  ADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMA-FLKQPARAPEYRME 133
                R +  + G  K  G A  I +N   HH + L       ++  LK P +       
Sbjct: 120 VQATKRFDLLLDGQFKISGTASKIGRNAAYHHCTLLCGTDGTFLSSLLKSPYQGIRSNAT 179

Query: 134 RGHTEFICRMNEYLP---RTDFIEKTTEAVETYFSVKNVNLEATEE 176
                 +  + E  P       I        T   + N        
Sbjct: 180 ASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQIDNHIHLINPT 225
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3 Length = 341 Back     alignment and structure
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Length = 337 Back     alignment and structure
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A Length = 262 Back     alignment and structure
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3 Length = 288 Back     alignment and structure
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3 Length = 288 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query209
2c8m_A262 Lipoate-protein ligase A; lipoylation; HET: LPA; 1 100.0
1vqz_A341 Lipoate-protein ligase, putative; class II AARS an 100.0
3a7r_A337 Lipoate-protein ligase A; adenylate-forming enzyme 100.0
2e5a_A347 Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 100.0
2p5i_A288 BH3822 protein; PFAM03099, structural genomics, PS 100.0
2p0l_A288 Lipoate-protein ligase A; PFAM, lopoate-protein li 100.0
2qhs_A237 Lipoyltransferase; globular protein; HET: OCA; 1.5 99.96
1w66_A232 Lipoyltransferase; lipoate-protein ligase B, lipoi 99.86
2dxu_A235 Biotin--[acetyl-COA-carboxylase] ligase; biotin bi 96.02
3bfm_A235 Biotin protein ligase-like protein of unknown FUN; 94.9
2eay_A233 Biotin [acetyl-COA-carboxylase] ligase; biotin bio 94.03
1bia_A321 BIRA bifunctional protein; transcription regulatio 94.01
3rkx_A323 Biotin-[acetyl-COA-carboxylase] ligase; biotin pro 92.99
2ej9_A237 Putative biotin ligase; biotin biosynthesis, monom 89.15
3rux_A270 BIRA bifunctional protein; biotin-protein ligase, 88.43
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A Back     alignment and structure
Probab=100.00  E-value=7.7e-42  Score=293.09  Aligned_cols=182  Identities=15%  Similarity=0.260  Sum_probs=145.7

Q ss_pred             CCCChhhhcchhhhhhCCCCEEEcccCCceeEecCCceEEEEEEeCCCCC---CCCchhHHHHHHHHHhHHhHhcCc---
Q 028411            1 MLRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVP---GVQPFPRSIMSWSGLLYNQVFKGI---   74 (209)
Q Consensus         1 ~~~~~~~evnld~~~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~~---~~~~~~~~i~~~L~~l~~~~~~gv---   74 (209)
                      ++++++.|+|+++|+++||+||||.|||||||||+|++|||++.|.....   .|..+.+.|+++|+.+      |+   
T Consensus        49 ~~q~~~~e~~~~~~~~~gi~vvrR~sGGgavyhd~G~l~ys~i~~~~~~~~~~~y~~l~~~ii~~l~~l------Gi~~~  122 (262)
T 2c8m_A           49 YFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLGDLNFSVVRSSDDMDITSMFRTMNEAVVNSLRIL------GLDAR  122 (262)
T ss_dssp             TTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEECTTEEEEEEEEECSSCCHHHHHHHHHHHHHHHHHHT------TCCCE
T ss_pred             CCCChhHHhHHHHHHhcCCcEEEECCCCceEEeCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHc------CCCcc
Confidence            46899999999999999999999999999999999999999999876421   4777899999999999      77   


Q ss_pred             -------cccccCcCcEEeCCeEeeeeeeEEeCCEEEEEeEEeecccccccc-ccccccCCCcccccccccccccccccc
Q 028411           75 -------ADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMA-FLKQPARAPEYRMERGHTEFICRMNEY  146 (209)
Q Consensus        75 -------~~~~~~~~Di~v~grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~-~L~~p~~k~~~k~v~s~~~~vt~L~e~  146 (209)
                             ..+|.++|||+++||||+|+||++.+++++|||||+++.|++.|. +|+++++++.+++++|++++||||+++
T Consensus       123 ~~~~~~~~a~~~g~~dv~v~g~Ki~G~aqr~~~~~~lhhgtllv~~d~~~~~~~l~~~~~~~~~~g~~s~~~~vtsL~~~  202 (262)
T 2c8m_A          123 PGELNDVSIPVNKKTDIMAGEKKIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDF  202 (262)
T ss_dssp             ECCBCCTTSSSSBTTSEEETTEEEEEEEEEEETTEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGT
T ss_pred             cccccCCcceECCcCcEEECCeEEEEeeeEEeCCEEEEEEEEEecCCHHHHHHHhCCChhhhhhhccccHHhhhccHHHh
Confidence                   677778999999999999999999999999999999999999997 999999999999999999999999998


Q ss_pred             CC--chHHHHHHHHHHHHHcccCccccccccCcCCCCCCCccccCCHHHHHHHHhccccc
Q 028411          147 LP--RTDFIEKTTEAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQPEI  204 (209)
Q Consensus       147 l~--~~~~~e~l~~al~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  204 (209)
                      ++  .+.+.+.|.++|.+.|+.+                ...+.||++||+.++++..|+
T Consensus       203 ~~~~~~~v~~~l~~~~~~~~~~~----------------~~~~~lt~~e~~~~~~l~~~k  246 (262)
T 2c8m_A          203 VDVSIDEVRNALIRGFSETLHID----------------FREDTITEKEESLARELFDKK  246 (262)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTCE----------------EEECCCCHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCC----------------ceecCCCHHHHHHHHHHHHhh
Confidence            62  4566666777777777653                145889999999999987754
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3 Back     alignment and structure
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Back     alignment and structure
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Back     alignment and structure
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3 Back     alignment and structure
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3 Back     alignment and structure
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A Back     alignment and structure
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Back     alignment and structure
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... Back     alignment and structure
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP} Back     alignment and structure
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* Back     alignment and structure
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Back     alignment and structure
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A* Back     alignment and structure
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 209
d1x2ga2246 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal do 5e-20
d1vqza2241 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-te 4e-17
d2c8ma1256 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Ther 5e-17
d2p5ia1265 d.104.1.3 (A:14-278) Hypothetical protein BH3822 { 1e-16
d2p0la1269 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Stre 7e-13
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Two-domain LplA, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 82.9 bits (204), Expect = 5e-20
 Identities = 33/177 (18%), Positives = 58/177 (32%), Gaps = 7/177 (3%)

Query: 4   KPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDVPGVQPFPRSIMSWS 63
            P +      +  D V + +R +GGG V  D G    T +  K +          +++  
Sbjct: 50  NPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYD-KTISTSIVLNAL 108

Query: 64  GLLYNQVFKGIADFQLRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDY-AEGNMAFLK 122
             L        +         V G+RK  G+A   TK+R  HH + L +        +L 
Sbjct: 109 NALGVSAE--ASGRNDLVVKTVEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLN 166

Query: 123 QPARAPEYRMERGHTEFICRMNEYLP---RTDFIEKTTEAVETYFSVKNVNLEATEE 176
              +    +        +  + E LP        E  TEA   ++  +      +  
Sbjct: 167 PDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEIISPN 223
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 241 Back     information, alignment and structure
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Length = 256 Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Length = 265 Back     information, alignment and structure
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Length = 269 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query209
d1vqza2241 LplA-like protein SP1160, N-terminal domain {Strep 100.0
d2c8ma1256 Lipoate-protein ligase A {Thermoplasma acidophilum 100.0
d2p5ia1265 Hypothetical protein BH3822 {Bacillus halodurans [ 100.0
d1x2ga2246 Two-domain LplA, N-terminal domain {Escherichia co 100.0
d2p0la1269 Lipoate-protein ligase A {Streptococcus agalactiae 100.0
d1w66a1216 Lipoyltransferase LipB {Mycobacterium tuberculosis 98.89
d2zgwa2188 Biotin--[acetyl-CoA-carboxylase] ligase catalytic 95.31
d1biaa3207 Biotin repressor/biotin holoenzyme synthetase, cat 93.16
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: LplA-like protein SP1160, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=1.5e-41  Score=285.44  Aligned_cols=186  Identities=22%  Similarity=0.291  Sum_probs=159.7

Q ss_pred             CCCChhhhcchhhhhhCCCCEEEcccCCceeEecCCceEEEEEEeCCCC--CCCCchhHHHHHHHHHhHHhHhcCccccc
Q 028411            1 MLRKPSELLEIGSVLRDQVPVMKRFTGGGTVVVDKGTVFVTLICNKDDV--PGVQPFPRSIMSWSGLLYNQVFKGIADFQ   78 (209)
Q Consensus         1 ~~~~~~~evnld~~~~~gI~vvRR~sGGGaVyhD~g~l~~Sli~~~~~~--~~~~~~~~~i~~~L~~l~~~~~~gv~~~~   78 (209)
                      .+++++.|||+++|+++||++|||+|||||||||+|+++||+++|.+..  ..|..+++.++++|+.+      |+...+
T Consensus        45 ~~q~~~~e~~~~~~~~~gi~vvRR~tGGgaV~h~~g~~~~s~i~~~~~~~~~~~~~~~~~i~~al~~~------g~~a~~  118 (241)
T d1vqza2          45 RHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDLNNLNYTIISKEDENKAFDFKSFSTPVINTLAQL------GVKAEF  118 (241)
T ss_dssp             TTCCGGGTBCHHHHHHHTCEEEECSSCSCCEEECTTEEEEEEEEECCTTCCCSHHHHHHHHHHHHHHT------TCCEEE
T ss_pred             CCCChhhhhCHHHHHHCCCeEEEEcCCCceEEECCCCeEEEEEecCccchHHHHHHHHHHHHHHHHHh------ccceEE
Confidence            3688999999999999999999999999999999999999999997763  36778899999999999      885445


Q ss_pred             cCcCcEEeCCeEeeeeeeEEeCCEEEEEeEEeecccccccc-ccccccCCCccccccccccccccccccCCchHHHHHHH
Q 028411           79 LRENDYVFGNRKFGGNAQSITKNRWIHHTSFLWDYAEGNMA-FLKQPARAPEYRMERGHTEFICRMNEYLPRTDFIEKTT  157 (209)
Q Consensus        79 ~~~~Di~v~grKIsG~Aq~~~~~~~l~HGtlL~d~d~~~~~-~L~~p~~k~~~k~v~s~~~~vt~L~e~l~~~~~~e~l~  157 (209)
                      .+++|+.++||||+|+||++.+++++|||||++++|++.|. +|++|++++.+++++|++++||||++.+++....+.++
T Consensus       119 ~~~~d~~v~g~Ki~G~aq~~~~~~~l~hgsll~~~d~~~~~~~l~~~~~~~~~~~~~s~~~~v~~l~~~l~~~~~~e~~~  198 (241)
T d1vqza2         119 TGRNDLEIDGKKFCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFR  198 (241)
T ss_dssp             ETTTEEEETTEEEEEEEEEEETTEEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHH
T ss_pred             eccCCEEECCEEEeeEEEEEeCCeEEEEEEEEecCCHHHHHHHhCCCcccchhhccccchhhccchHHHhCCCCCHHHHH
Confidence            48999999999999999999999999999999999999997 99999999999999999999999999887655555555


Q ss_pred             HHHHHHcccCccccccccCcCCCCCCCccccCCHHHHHHHHhcccccc
Q 028411          158 EAVETYFSVKNVNLEATEEPCGAEFVPSTRLLSKQELEEALGTQPEII  205 (209)
Q Consensus       158 ~al~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  205 (209)
                      ++|.+.|.-...   +          ...+.||+++|+.++++..|+-
T Consensus       199 ~~l~~~f~~~~~---~----------~~~~~l~~~e~~~~~~l~~~ky  233 (241)
T d1vqza2         199 DLLLEYMKKEYP---E----------MTEYVFSEEELAEINRIKDTKF  233 (241)
T ss_dssp             HHHHHHHHHHCT---T----------CEECCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcC---C----------CcccCCCHHHHHHHHHHHHhHc
Confidence            555555542100   0          1457899999999999887753
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Back     information, alignment and structure
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure