Citrus Sinensis ID: 028455

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
MEGIIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQEYR
cccEEEEEEccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccHHHHHHHHHHcccEEEEEEcccccEEEcccccccccEEEEEEccccccEEEEccccccccccccEEEEccccccccHHHHHHHHHHHHHHHccccccccccEEEccccccccccHHHHHHHHHHHccccccccc
cccEEEEEEccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHcHHHcccccHHHHHHHHccccccHHHHHHHHHHHcccEEEEEEccccEEEEcccccccccEEEEEEcccccccEEEcccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccEccHHHHHHHHHHcccccccccc
MEGIIVRrvipsdnsclFNAVGYvmehdknkapELRQVIAATvasdpvkyseaflgksnQEYCSWiqdpekwggaIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGlhydalaispfegapeefdqtifpvqkgrtigpaEDLALKLVKEQQRkktytdtanftlrcgvcqigviGQKEAVEHAQATghvnfqeyr
megiivrrvipsdnscLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQrkktytdtanftlRCGVCQIGVIGQKEAVEHAQatghvnfqeyr
MEGIIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQEYR
***IIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCGVCQIGVIGQKEAVEH*************
*EGIIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDALAISP******EFDQTIFPVQKGRTIGPAEDLAL*****QQRKKTYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQ***
MEGIIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQEYR
*EGIIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCGVCQIGVIGQKEAVE********N*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEGIIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQEYR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query208 2.2.26 [Sep-21-2011]
Q55BI3325 Ubiquitin thioesterase OT yes no 0.966 0.618 0.509 1e-53
Q567B1301 Ubiquitin thioesterase OT yes no 0.942 0.651 0.502 5e-53
Q5F3A6302 Ubiquitin thioesterase OT yes no 0.942 0.649 0.507 6e-52
Q5VVQ6348 Ubiquitin thioesterase OT yes no 0.927 0.554 0.485 2e-49
Q8CB27343 Ubiquitin thioesterase OT yes no 0.927 0.562 0.471 8e-49
Q32Q05343 Ubiquitin thioesterase OT no no 0.927 0.562 0.471 4e-48
Q9VRJ9347 Ubiquitin thioesterase OT yes no 0.947 0.567 0.451 6e-48
Q05B57348 Ubiquitin thioesterase OT yes no 0.927 0.554 0.471 2e-47
Q0IH43304 Ubiquitin thioesterase OT N/A no 0.942 0.644 0.473 2e-46
Q29FC9358 Ubiquitin thioesterase OT yes no 0.947 0.550 0.417 7e-45
>sp|Q55BI3|OTU1_DICDI Ubiquitin thioesterase OTU1 OS=Dictyostelium discoideum GN=yod1 PE=3 SV=1 Back     alignment and function desciption
 Score =  209 bits (532), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/208 (50%), Positives = 140/208 (67%), Gaps = 7/208 (3%)

Query: 3   GIIVRRVIPSDNSCLFNAVGYVMEHDKN--KAPELRQVIAATVASDPVKYSEAFLGKSNQ 60
           G   RRV   DNSCLF+AV YV+E DKN  K   LR +IA  V SDP +Y+EA LGKSN+
Sbjct: 121 GYATRRVTDDDNSCLFSAVAYVLE-DKNRLKGYSLRALIAQNVKSDPFEYNEAVLGKSNE 179

Query: 61  EYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLH 120
            YC+WIQ+P+ WGGAIELSIL+++Y  EIAA+DI T     YG+++KY+ERV LIYDG+H
Sbjct: 180 GYCNWIQNPKNWGGAIELSILSNHYKVEIAAFDISTQLMYCYGEDRKYTERVYLIYDGIH 239

Query: 121 YDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCG 180
           YDAL+I   +  PE+FD T F V    ++   +     L++++ +   +TDTA F+L C 
Sbjct: 240 YDALSICLTKNGPEDFDITRFSVDDKDSLAKMK----VLIEKEFKAGKFTDTAKFSLICL 295

Query: 181 VCQIGVIGQKEAVEHAQATGHVNFQEYR 208
            C   + G+KEA  HA  TGH NF EY+
Sbjct: 296 NCNKTLKGEKEAAIHASTTGHGNFTEYK 323
Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation.
Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1 Back     alignment and function description
>sp|Q5F3A6|OTU1_CHICK Ubiquitin thioesterase OTU1 OS=Gallus gallus GN=YOD1 PE=2 SV=1 Back     alignment and function description
>sp|Q5VVQ6|OTU1_HUMAN Ubiquitin thioesterase OTU1 OS=Homo sapiens GN=YOD1 PE=1 SV=1 Back     alignment and function description
>sp|Q8CB27|OTU1_MOUSE Ubiquitin thioesterase OTU1 OS=Mus musculus GN=Yod1 PE=1 SV=1 Back     alignment and function description
>sp|Q32Q05|OTU1_RAT Ubiquitin thioesterase OTU1 OS=Rattus norvegicus GN=Yod1 PE=2 SV=1 Back     alignment and function description
>sp|Q9VRJ9|OTU1_DROME Ubiquitin thioesterase OTU1 OS=Drosophila melanogaster GN=CG4603 PE=2 SV=1 Back     alignment and function description
>sp|Q05B57|OTU1_BOVIN Ubiquitin thioesterase OTU1 OS=Bos taurus GN=YOD1 PE=2 SV=1 Back     alignment and function description
>sp|Q0IH43|OTU1_XENLA Ubiquitin thioesterase OTU1 OS=Xenopus laevis GN=yod1 PE=2 SV=1 Back     alignment and function description
>sp|Q29FC9|OTU1_DROPS Ubiquitin thioesterase OTU1 OS=Drosophila pseudoobscura pseudoobscura GN=GA18292 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query208
255583601208 cysteine-type peptidase, putative [Ricin 1.0 1.0 0.879 1e-106
242060618208 hypothetical protein SORBIDRAFT_04g00442 1.0 1.0 0.865 1e-105
224117526208 predicted protein [Populus trichocarpa] 1.0 1.0 0.879 1e-105
224061427207 predicted protein [Populus trichocarpa] 0.995 1.0 0.884 1e-104
356501525208 PREDICTED: ubiquitin thioesterase OTU1-l 1.0 1.0 0.860 1e-103
351725507208 uncharacterized protein LOC100499809 [Gl 1.0 1.0 0.855 1e-103
226509350208 uncharacterized protein LOC100279494 [Ze 1.0 1.0 0.836 1e-102
125538215208 hypothetical protein OsI_05978 [Oryza sa 1.0 1.0 0.831 1e-102
357150141208 PREDICTED: ubiquitin thioesterase OTU1-l 1.0 1.0 0.836 1e-102
357494501208 Ubiquitin thioesterase OTU1 [Medicago tr 1.0 1.0 0.836 1e-101
>gi|255583601|ref|XP_002532556.1| cysteine-type peptidase, putative [Ricinus communis] gi|223527711|gb|EEF29817.1| cysteine-type peptidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/208 (87%), Positives = 195/208 (93%)

Query: 1   MEGIIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQ 60
           MEGIIVRRVIPSDNSCLFNAVGYVM+H+KNKAPELRQVIAA VASDP KY+EAFL K N 
Sbjct: 1   MEGIIVRRVIPSDNSCLFNAVGYVMDHNKNKAPELRQVIAAAVASDPEKYNEAFLAKPNG 60

Query: 61  EYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLH 120
           EYC+WI D EKWGGAIELS+LADYYGREIAAYDIQTTRCDLYGQ++ YSERVMLIYDGLH
Sbjct: 61  EYCAWILDSEKWGGAIELSVLADYYGREIAAYDIQTTRCDLYGQDRGYSERVMLIYDGLH 120

Query: 121 YDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCG 180
           YDALAISPFEGAPEEFDQTIF VQK RT+G AE LAL LVKEQQRK++YTDT+NFTLRCG
Sbjct: 121 YDALAISPFEGAPEEFDQTIFAVQKDRTVGLAEGLALNLVKEQQRKRSYTDTSNFTLRCG 180

Query: 181 VCQIGVIGQKEAVEHAQATGHVNFQEYR 208
           VCQIGV+GQKEAVEHAQATGHVNFQEYR
Sbjct: 181 VCQIGVVGQKEAVEHAQATGHVNFQEYR 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|242060618|ref|XP_002451598.1| hypothetical protein SORBIDRAFT_04g004420 [Sorghum bicolor] gi|241931429|gb|EES04574.1| hypothetical protein SORBIDRAFT_04g004420 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|224117526|ref|XP_002317598.1| predicted protein [Populus trichocarpa] gi|222860663|gb|EEE98210.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224061427|ref|XP_002300474.1| predicted protein [Populus trichocarpa] gi|222847732|gb|EEE85279.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356501525|ref|XP_003519575.1| PREDICTED: ubiquitin thioesterase OTU1-like isoform 1 [Glycine max] gi|356501527|ref|XP_003519576.1| PREDICTED: ubiquitin thioesterase OTU1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|351725507|ref|NP_001236327.1| uncharacterized protein LOC100499809 [Glycine max] gi|255626797|gb|ACU13743.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|226509350|ref|NP_001145967.1| uncharacterized protein LOC100279494 [Zea mays] gi|195647914|gb|ACG43425.1| hypothetical protein [Zea mays] gi|219885153|gb|ACL52951.1| unknown [Zea mays] gi|413926491|gb|AFW66423.1| hypothetical protein ZEAMMB73_214721 [Zea mays] Back     alignment and taxonomy information
>gi|125538215|gb|EAY84610.1| hypothetical protein OsI_05978 [Oryza sativa Indica Group] gi|125580928|gb|EAZ21859.1| hypothetical protein OsJ_05505 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357150141|ref|XP_003575356.1| PREDICTED: ubiquitin thioesterase OTU1-like isoform 1 [Brachypodium distachyon] gi|357150144|ref|XP_003575357.1| PREDICTED: ubiquitin thioesterase OTU1-like isoform 2 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|357494501|ref|XP_003617539.1| Ubiquitin thioesterase OTU1 [Medicago truncatula] gi|217074660|gb|ACJ85690.1| unknown [Medicago truncatula] gi|355518874|gb|AET00498.1| Ubiquitin thioesterase OTU1 [Medicago truncatula] gi|388510632|gb|AFK43382.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query208
TAIR|locus:2007991208 AT1G50670 "AT1G50670" [Arabido 1.0 1.0 0.831 3.4e-93
DICTYBASE|DDB_G0271346325 yod1 "ubiquitin thioesterase O 0.966 0.618 0.524 2e-49
ZFIN|ZDB-GENE-050417-217301 yod1 "YOD1 OTU deubiquinating 0.942 0.651 0.502 2.5e-49
UNIPROTKB|F1P2K8302 YOD1 "Ubiquitin thioesterase O 0.942 0.649 0.507 2.3e-48
UNIPROTKB|Q5F3A6302 YOD1 "Ubiquitin thioesterase O 0.942 0.649 0.507 2.3e-48
UNIPROTKB|Q5VVQ6348 YOD1 "Ubiquitin thioesterase O 0.947 0.566 0.5 3.8e-46
UNIPROTKB|E2R1N1345 YOD1 "Uncharacterized protein" 0.947 0.571 0.5 6.2e-46
UNIPROTKB|J9P3T6290 YOD1 "Uncharacterized protein" 0.947 0.679 0.5 6.2e-46
MGI|MGI:2442596343 Yod1 "YOD1 OTU deubiquitinatin 0.947 0.574 0.485 7.9e-46
RGD|1359726343 Yod1 "YOD1 OTU deubiquinating 0.947 0.574 0.485 3.4e-45
TAIR|locus:2007991 AT1G50670 "AT1G50670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 173/208 (83%), Positives = 191/208 (91%)

Query:     1 MEGIIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQ 60
             MEGIIVRRVIPSDNSCLFNA+GYVM+ DKNKAPELRQVIAA VAS+  KY+EAFLGK N+
Sbjct:     1 MEGIIVRRVIPSDNSCLFNAIGYVMDKDKNKAPELRQVIAAAVASNKEKYNEAFLGKLNE 60

Query:    61 EYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLH 120
             EYC+WI +P+KWGGAIELSILADYYGREIAAYDIQT+RCDLYGQ + Y ERVMLIYDGLH
Sbjct:    61 EYCAWILNPDKWGGAIELSILADYYGREIAAYDIQTSRCDLYGQTRNYDERVMLIYDGLH 120

Query:   121 YDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCG 180
             YDALA+SPFEGA E+FD TI+PV K R+IG  E LAL LVK+QQRK++YTDTANFTLRCG
Sbjct:   121 YDALALSPFEGAEEDFDMTIYPVGKDRSIGSIEGLALNLVKDQQRKRSYTDTANFTLRCG 180

Query:   181 VCQIGVIGQKEAVEHAQATGHVNFQEYR 208
             VCQIGVIGQKEAVEHAQATGHVNFQEY+
Sbjct:   181 VCQIGVIGQKEAVEHAQATGHVNFQEYK 208
GO:0008150 "biological_process" evidence=ND
GO:0008234 "cysteine-type peptidase activity" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
DICTYBASE|DDB_G0271346 yod1 "ubiquitin thioesterase OTU1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-217 yod1 "YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2K8 YOD1 "Ubiquitin thioesterase OTU1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3A6 YOD1 "Ubiquitin thioesterase OTU1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VVQ6 YOD1 "Ubiquitin thioesterase OTU1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R1N1 YOD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P3T6 YOD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2442596 Yod1 "YOD1 OTU deubiquitinating enzyme 1 homologue (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1359726 Yod1 "YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q567B1OTU1_DANRE3, ., 4, ., 1, 9, ., 1, 20.50240.94230.6511yesno
Q55BI3OTU1_DICDI3, ., 4, ., 1, 9, ., 1, 20.50960.96630.6184yesno
Q5F3A6OTU1_CHICK3, ., 4, ., 1, 9, ., 1, 20.50720.94230.6490yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.766
3rd Layer3.4.19.120.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
COG5539306 COG5539, COG5539, Predicted cysteine protease (OTU 4e-29
pfam02338123 pfam02338, OTU, OTU-like cysteine protease 4e-23
>gnl|CDD|227826 COG5539, COG5539, Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  109 bits (274), Expect = 4e-29
 Identities = 61/198 (30%), Positives = 98/198 (49%), Gaps = 14/198 (7%)

Query: 13  DNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQEYCSWIQDPEKW 72
           DNS LF A  Y          +LR+V++  V S+P  Y+ A L      Y +WI  P+  
Sbjct: 120 DNSRLFQAERY--SLRDASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQ 177

Query: 73  G-GAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYD--ALAISPF 129
           G G IE++I++D     I   D+     D Y     Y +R+ +++ G+H+D   LA+  +
Sbjct: 178 GDGCIEIAIISDQLPVRIHVVDVDKDSEDRYN-SHPYVQRISILFTGIHFDEETLAMVLW 236

Query: 130 EGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCGVCQIGVIGQ 189
           +      ++ +F    G TI   E   L  + +      YT+TA+ +++C +C  G +G+
Sbjct: 237 D---TYVNEVLFDASDGITI---EIQQLASLLKNP--HYYTNTASPSIKCNICGTGFVGE 288

Query: 190 KEAVEHAQATGHVNFQEY 207
           K+   HA ATGH NF E 
Sbjct: 289 KDYYAHALATGHYNFGED 306

Length = 306
>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 208
KOG3288307 consensus OTU-like cysteine protease [Signal trans 100.0
COG5539306 Predicted cysteine protease (OTU family) [Posttran 100.0
PF02338121 OTU: OTU-like cysteine protease; InterPro: IPR0033 99.94
KOG2606302 consensus OTU (ovarian tumor)-like cysteine protea 99.92
PF10275244 Peptidase_C65: Peptidase C65 Otubain; InterPro: IP 99.61
KOG3991256 consensus Uncharacterized conserved protein [Funct 99.57
KOG2605371 consensus OTU (ovarian tumor)-like cysteine protea 99.44
COG5539306 Predicted cysteine protease (OTU family) [Posttran 99.03
PF05415104 Peptidase_C36: Beet necrotic yellow vein furovirus 96.05
PF0214863 zf-UBP: Zn-finger in ubiquitin-hydrolases and othe 87.06
PF1287425 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG 84.51
PF12756100 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 83.8
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-68  Score=448.66  Aligned_cols=201  Identities=57%  Similarity=1.023  Sum_probs=191.8

Q ss_pred             CCCcEEEEEeCCCCchhhHHHHHHhhcCCCc-hHHHHHHHHHHHhcChhcchhhhcCCCHHHHHHHhCCCCcccCHHHHH
Q 028455            1 MEGIIVRRVIPSDNSCLFNAVGYVMEHDKNK-APELRQVIAATVASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELS   79 (208)
Q Consensus         1 ~~~~l~~~~ip~DGnCLFrAis~~l~~~~~~-~~~lR~~va~~I~~np~~y~e~~l~~~~~eY~~~i~~~~~WGG~iEL~   79 (208)
                      |+|.|.+|+||+||||||+||+|.+.+.... ..+||++||..+.+||+.|+++|||++..+||.||+++.+|||+|||+
T Consensus       106 ~~gvl~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIEls  185 (307)
T KOG3288|consen  106 GEGVLSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELS  185 (307)
T ss_pred             ccceeEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEee
Confidence            5789999999999999999999999987543 469999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCceEEEEECCCCceeEeCCCCCCCCeEEEEEcCccceeeecCCCCCCCCCCCeeeeeCCCCCcchHHHHHHHHH
Q 028455           80 ILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKL  159 (208)
Q Consensus        80 als~~~~~~I~V~d~~~~~~~~fg~~~~~~~~i~llY~G~HYD~l~~~~~~~~~~~~d~~~f~~~~~~~~~~~~~~a~~l  159 (208)
                      |||++|+++|+|+|+++.++++||+++++..|++|+|+|+|||++++++.  .|.+.|.|+||.+|    +.++.+|++|
T Consensus       186 ILS~~ygveI~vvDiqt~rid~fged~~~~~rv~llydGIHYD~l~m~~~--~~~~~~~tifp~~d----d~v~~~alqL  259 (307)
T KOG3288|consen  186 ILSDYYGVEICVVDIQTVRIDRFGEDKNFDNRVLLLYDGIHYDPLAMNEF--KPTDVDNTIFPVSD----DTVLTQALQL  259 (307)
T ss_pred             eehhhhceeEEEEecceeeehhcCCCCCCCceEEEEecccccChhhhccC--CccCCccccccccc----chHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999976  57778899999999    5678999999


Q ss_pred             HHHHhhCCCccccCCceeeccccCCCcCCHHHHHHHHHhhCCCccccc
Q 028455          160 VKEQQRKKTYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQEY  207 (208)
Q Consensus       160 ~~~~~~~~~~t~t~~~~~~C~~c~~~~~g~~~a~~ha~~tgH~~F~e~  207 (208)
                      |++||++||||||++|+|||.+|+..|+||++|++||++|||+||+|+
T Consensus       260 a~~~k~~r~ytdt~~ftlRC~~Cq~glvGq~ea~eHA~~TGH~nFge~  307 (307)
T KOG3288|consen  260 ASELKRTRYYTDTAKFTLRCMVCQMGLVGQKEAAEHAKATGHVNFGEY  307 (307)
T ss_pred             HHHHHhcceeccccceEEEeeecccceeeHHHHHHHHHhcCCCccccC
Confidence            999999999999999999999999999999999999999999999996

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae Back     alignment and domain information
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG3991 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A Back     alignment and domain information
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
3by4_A212 Structure Of Ovarian Tumor (Otu) Domain In Complex 2e-29
3c0r_A212 Structure Of Ovarian Tumor (Otu) Domain In Complex 2e-28
>pdb|3BY4|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With Ubiquitin Length = 212 Back     alignment and structure 
Iteration: 1

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 117/211 (55%), Gaps = 19/211 (9%)
Query: 2   EGIIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQE 61
           E ++    +  DNSCLF+A+ Y +   ++   +LR++++  V ++PVK+++A L K N++
Sbjct: 17  ENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKD 75
Query: 62  YCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHY 121
           Y  WI   E WGGAIE+ I++D     I   DI   + + +  E K+   ++++++G+HY
Sbjct: 76  YAQWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKF-NEDKFDNYILILFNGIHY 134
Query: 122 DALAISPFEGAPEEFDQTIFPVQKGRTIGPAED----LALKLVKEQQRKKTYTDTANFTL 177
           D+L ++ F        +T+F   +     P  D     AL+L    ++     +T    +
Sbjct: 135 DSLTMNEF--------KTVFNKNQ-----PESDDVLTAALQLASNLKQTGYSFNTHKAQI 181
Query: 178 RCGVCQIGVIGQKEAVEHAQATGHVNFQEYR 208
           +C  CQ+  +G++E   HA++TGHV+F + R
Sbjct: 182 KCNTCQMTFVGEREVARHAESTGHVDFGQNR 212
>pdb|3C0R|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With Ubiquitin Length = 212 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
3by4_A212 OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro 1e-72
3phx_A185 RNA-directed RNA polymerase L; OTU domain, DE-ubiq 6e-32
3phu_A219 RNA-directed RNA polymerase L; OTU domain, DE-ubiq 4e-31
3pfy_A185 OTU domain-containing protein 5; structural genomi 3e-22
1tff_A234 Ubiquitin thiolesterase protein OTUB2; hydrolase; 5e-04
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212 Back     alignment and structure
 Score =  218 bits (556), Expect = 1e-72
 Identities = 59/207 (28%), Positives = 113/207 (54%), Gaps = 11/207 (5%)

Query: 2   EGIIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQE 61
           E ++    +  DNSCLF+A+ Y +    +   +LR++++  V ++PVK+++A L K N++
Sbjct: 17  ENVLSVHPVLDDNSCLFHAIAYGIFKQDS-VRDLREMVSKEVLNNPVKFNDAILDKPNKD 75

Query: 62  YCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHY 121
           Y  WI   E WGGAIE+ I++D     I   DI   + + + ++ K+   ++++++G+HY
Sbjct: 76  YAQWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNED-KFDNYILILFNGIHY 134

Query: 122 DALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCGV 181
           D+L ++ F+    +       V            AL+L    ++     +T    ++C  
Sbjct: 135 DSLTMNEFKTVFNKNQPESDDVLTA---------ALQLASNLKQTGYSFNTHKAQIKCNT 185

Query: 182 CQIGVIGQKEAVEHAQATGHVNFQEYR 208
           CQ+  +G++E   HA++TGHV+F + R
Sbjct: 186 CQMTFVGEREVARHAESTGHVDFGQNR 212
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185 Back     alignment and structure
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219 Back     alignment and structure
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185 Back     alignment and structure
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query208
3by4_A212 OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro 100.0
3pfy_A185 OTU domain-containing protein 5; structural genomi 100.0
3phx_A185 RNA-directed RNA polymerase L; OTU domain, DE-ubiq 100.0
3phu_A219 RNA-directed RNA polymerase L; OTU domain, DE-ubiq 100.0
1tff_A234 Ubiquitin thiolesterase protein OTUB2; hydrolase; 99.9
2zfy_A234 Ubiquitin thioesterase OTUB1; otubain, structural 99.88
4dhi_B284 Ubiquitin thioesterase otubain-like; ubiquitin E2 99.86
4ddg_A399 Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI 99.82
3dkb_A390 Tumor necrosis factor, alpha-induced protein 3; OT 98.53
3zrh_A454 Ubiquitin thioesterase zranb1; hydrolase, deubiqui 98.26
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Back     alignment and structure
Probab=100.00  E-value=2.2e-67  Score=441.64  Aligned_cols=196  Identities=30%  Similarity=0.667  Sum_probs=149.4

Q ss_pred             CCcEEEEEeCCCCchhhHHHHHHhhcCCCchHHHHHHHHHHHhcChhcchhhhcCCCHHHHHHHhCCCCcccCHHHHHHH
Q 028455            2 EGIIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSIL   81 (208)
Q Consensus         2 ~~~l~~~~ip~DGnCLFrAis~~l~~~~~~~~~lR~~va~~I~~np~~y~e~~l~~~~~eY~~~i~~~~~WGG~iEL~al   81 (208)
                      +|.|.+++||+||||||||||+|| +++..|.+||+.||+||++||+.|.++|+++++++||+||+++++|||+|||+||
T Consensus        17 ~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~Al   95 (212)
T 3by4_A           17 ENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGII   95 (212)
T ss_dssp             CSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHHH
T ss_pred             CCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHHH
Confidence            468999999999999999999999 9999999999999999999999998899999999999999999999999999999


Q ss_pred             HHhhCceEEEEECCCCceeEeCCCCCCCCeEEEEEcCccceeeecCCCCCCCCCCCeeeeeCCCCCcchHHHHHHHHHHH
Q 028455           82 ADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVK  161 (208)
Q Consensus        82 s~~~~~~I~V~d~~~~~~~~fg~~~~~~~~i~llY~G~HYD~l~~~~~~~~~~~~d~~~f~~~~~~~~~~~~~~a~~l~~  161 (208)
                      |++|+++|.|++.+++++..|+++. ..++++|+|+|+|||+|++        ++|+|+|+++|++. +.++++|++||+
T Consensus        96 s~~~~~~I~V~~~~~~~~~~~~~~~-~~~~I~L~Y~g~HYdsl~~--------~~d~~~f~~~~~~~-~~~~~~a~~l~~  165 (212)
T 3by4_A           96 SDALAVAIYVVDIDAVKIEKFNEDK-FDNYILILFNGIHYDSLTM--------NEFKTVFNKNQPES-DDVLTAALQLAS  165 (212)
T ss_dssp             HHHHTCEEEEEETTTTEEEEESTTT-CSEEEEEEECSSCEEEEEE--------TTTBCCEETTSTTH-HHHHHHHHHHHH
T ss_pred             HHHHCCCEEEEECCCCCeEEeCCCC-CCCeEEEEEcCCcceEEec--------CCCcccCCccccch-HHHHHHHHHHHH
Confidence            9999999999999888899999876 5778899999999999998        56899999999766 778999999999


Q ss_pred             HHhhCCCccccCCceeeccccCCCcCCHHHHHHHHHhhCCCcccccC
Q 028455          162 EQQRKKTYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQEYR  208 (208)
Q Consensus       162 ~~~~~~~~t~t~~~~~~C~~c~~~~~g~~~a~~ha~~tgH~~F~e~~  208 (208)
                      +||++||||||++|+|||++||++++|+++|++||++|||++|+|++
T Consensus       166 ~~~~~~~~t~~~~~~l~C~~C~~~~~g~~~a~~ha~~tgH~~f~e~~  212 (212)
T 3by4_A          166 NLKQTGYSFNTHKAQIKCNTCQMTFVGEREVARHAESTGHVDFGQNR  212 (212)
T ss_dssp             HHHHTTCCC--------------------------------------
T ss_pred             HHHHcCCcccccCeEEEcccCCCcccCHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999974
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Back     alignment and structure
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Back     alignment and structure
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Back     alignment and structure
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Back     alignment and structure
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Back     alignment and structure
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A Back     alignment and structure
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Back     alignment and structure
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A Back     alignment and structure
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 208
d1tffa_228 d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB 3e-12
>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (148), Expect = 3e-12
 Identities = 14/94 (14%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 35  LRQVIAATVASDPVKYSEAFLGK-SNQEYCSW-IQDPEKWGGAIELSILADYYGR--EIA 90
           LR + +A + +    +      +   +++C+  ++        I+++ L+       ++ 
Sbjct: 129 LRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVE 188

Query: 91  AYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDAL 124
             D   T  + +   +  +  V L+Y   HY+ L
Sbjct: 189 YVDEMDTALNHHVFPEAATPSVYLLYKTSHYNIL 222

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query208
d1tffa_228 Ubiquitin thiolesterase protein OTUB2 (Otubain-2) 99.89
d2cota238 Zinc finger and SCAN domain-containing protein 16, 87.33
d1zu1a172 dsRNA-binding protein ZFa (ZNF346, JAZ) {African c 83.0
d1x6ea226 Zinc finger protein 24 {Human (Homo sapiens) [TaxI 82.79
d2eppa153 PATZ1 {Human (Homo sapiens) [TaxId: 9606]} 81.37
>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.3e-23  Score=173.70  Aligned_cols=94  Identities=14%  Similarity=0.223  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHhcChhcchhhhcC--CCHHHHHHH-hCCCCcccCHHHHHHHHHhhCceEEEEECCCC--ceeEeCCCCCC
Q 028455           34 ELRQVIAATVASDPVKYSEAFLG--KSNQEYCSW-IQDPEKWGGAIELSILADYYGREIAAYDIQTT--RCDLYGQEKKY  108 (208)
Q Consensus        34 ~lR~~va~~I~~np~~y~e~~l~--~~~~eY~~~-i~~~~~WGG~iEL~als~~~~~~I~V~d~~~~--~~~~fg~~~~~  108 (208)
                      .||.+++.||+.|++.| .+|++  .++++||.+ |.++++|||++||.|||++|+++|.|+.++..  .+..+..+.+.
T Consensus       128 ~lR~l~s~~i~~~~~~y-~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~~~~  206 (228)
T d1tffa_         128 FLRLLTSAFIRNRADFF-RHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAA  206 (228)
T ss_dssp             HHHHHHHHHHHHTHHHH-GGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCS
T ss_pred             HHHHHHHHHHHHCHHHH-HhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCCCCC
Confidence            47999999999999999 77774  479999987 88899999999999999999999999987643  22222222234


Q ss_pred             CCeEEEEEcCccceeeecCC
Q 028455          109 SERVMLIYDGLHYDALAISP  128 (208)
Q Consensus       109 ~~~i~llY~G~HYD~l~~~~  128 (208)
                      ..+|+|+|.+.|||+|++.+
T Consensus       207 ~~~I~Lly~pgHYdiLY~~~  226 (228)
T d1tffa_         207 TPSVYLLYKTSHYNILYAAD  226 (228)
T ss_dssp             SCSEEEEEETTEEEEEEECC
T ss_pred             CCEEEEEeCCCCcccCccCC
Confidence            67899999999999999875
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure