Citrus Sinensis ID: 028479

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSHDDQVGKTVAIIVGVVAGLAILIVFLSICRRAMER
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccEEEEcccEEEEEccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccEEEcccEEEEEEcccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEccccHcccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccHHHHHHHHHHHHHHccHHcccccccEEEccccEEEEEEEcccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgngtstppeatVYGLYqcrgdlkttdcsRCIESAVNQISLvcpytygaslqlegcyvRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAqclgdltpadcTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGyydltvdsshddqvgKTVAIIVGVVAGLAILIVFLSICRRAMER
Flexible Loop (DISEMBL)
mgngtstppeaTVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSHDDQVGKTVAIIVGVVAGLAILIVFLSICRRAMER
Low Complexity Region (SEG)
MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSHDDQVGKTvaiivgvvaglailivFLSICRRAMER
Disordered region (IsUnstruct)
***********TVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSHDDQVGKTVAIIVGVVAGLAILIVFLSICR*****
Disordered Region (DISOPRED)
MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASG*******************IIVGVVAGLAILIVFLSICRRAMER
Disordered Region (DISEMBL)
********PEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSHDDQVGKTVAIIVGVVAGLAILIVFLSICRRAMER
Disordered Region (DISPRO)
*******PPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSHDDQVGKTVAIIVGVVAGLAILIVFLSICRRAME*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSHDDQVGKTVAIIVGVVAGLAILIVFLSICRRAMER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
Q6NKQ9	279	Cysteine-rich repeat secr	yes	no	0.937	0.698	0.680	1e-78
Q9ZU94	288	Cysteine-rich repeat secr	no	no	0.985	0.711	0.421	3e-43
Q0WPN8	298	Cysteine-rich repeat secr	no	no	0.860	0.600	0.445	4e-40
Q8GUJ2	299	Cysteine-rich repeat secr	no	no	0.961	0.668	0.382	1e-33
O22784	304	Cysteine-rich repeat secr	no	no	0.918	0.628	0.306	6e-20
Q6NM73	307	Cysteine-rich repeat secr	no	no	0.899	0.609	0.301	3e-19
Q8GXV7	303	Cysteine-rich repeat secr	no	no	0.980	0.673	0.269	2e-18
Q9LV60	263	Cysteine-rich repeat secr	no	no	0.740	0.585	0.333	2e-16
Q9SH41	284	Putative cysteine-rich re	no	no	0.716	0.524	0.303	4e-15
O49564	642	Cysteine-rich receptor-li	no	no	0.870	0.281	0.280	4e-14

>sp|Q6NKQ9|CRR15_ARATH Cysteine-rich repeat secretory protein 15 OS=Arabidopsis thaliana GN=CRRSP15 PE=2 SV=1

 Score =  292 bits (747), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 134/197 (68%), Positives = 171/197 (86%), Gaps = 2/197 (1%)

Query: 13  VYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTS 72
           V+GLYQCR DL+++DCS+CI+++V+QI+L+CPY+YGASLQLEGC++RYE  DFLGK DTS
Sbjct: 83  VFGLYQCRDDLRSSDCSKCIQTSVDQITLICPYSYGASLQLEGCFLRYETNDFLGKPDTS 142

Query: 73  IWYKKCS-KSVNNDVEFFKRRDDVLADLQ-TAVSFKVSSSGFVEGFAQCLGDLTPADCTT 130
           + YKKCS KSV ND +FFKRRDDVL+DL+ T + +KVS SG VEG+AQC+GDL+P+DCT 
Sbjct: 143 LRYKKCSSKSVENDYDFFKRRDDVLSDLESTQLGYKVSRSGLVEGYAQCVGDLSPSDCTA 202

Query: 131 CLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSHDDQVGKTVAIIVGVVA 190
           CLAE++ KLKNLCGSA AA+V+LAQCYARYW SGYYD + D ++ D VGK++AIIVGV+A
Sbjct: 203 CLAESVGKLKNLCGSAVAAEVYLAQCYARYWGSGYYDFSSDPTNGDHVGKSIAIIVGVIA 262

Query: 191 GLAILIVFLSICRRAME 207
           G AIL+V LS+CR +M 
Sbjct: 263 GFAILVVLLSLCRNSMH 279

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU94|CRR12_ARATH Cysteine-rich repeat secretory protein 12 OS=Arabidopsis thaliana GN=CRRSP12 PE=2 SV=2

 Score =  174 bits (442), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/216 (42%), Positives = 137/216 (63%), Gaps = 11/216 (5%)

Query: 3   NGTSTPPEATVYGLYQCRGDLKTT--DCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           NG S    ++VYGLYQCRGDL +   DC+RC+  AV+++  +C    G +LQLEGC+V+Y
Sbjct: 69  NGIS-GDSSSVYGLYQCRGDLSSGSGDCARCVARAVSRLGSLCAMASGGALQLEGCFVKY 127

Query: 61  EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADL--QTAVSFKVSSSGFVEGFAQ 118
           ++  FLG  D ++  ++C   V  + +   RRD V+  L   +  S++V  SG ++G AQ
Sbjct: 128 DNTTFLGVEDKTVVVRRCGPPVGYNSDEMTRRDSVVGSLAASSGGSYRVGVSGELQGVAQ 187

Query: 119 CLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYD------LTVDS 172
           C GDL+  +C  CL EAI +L+  CG A   DV+LA+CYARY A G +          ++
Sbjct: 188 CTGDLSATECQDCLMEAIGRLRTDCGGAAWGDVYLAKCYARYSARGGHSRANGYGGNRNN 247

Query: 173 SHDDQVGKTVAIIVGVVAGLAILIVFLSICRRAMER 208
           + DD++ KT+AIIVG++AG+ +L+VFLS   ++ ER
Sbjct: 248 NDDDEIEKTLAIIVGLIAGVTLLVVFLSFMAKSCER 283

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WPN8|CRR60_ARATH Cysteine-rich repeat secretory protein 60 OS=Arabidopsis thaliana GN=CRRSP60 PE=1 SV=1

 Score =  164 bits (415), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 113/182 (62%), Gaps = 3/182 (1%)

Query: 12  TVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDT 71
           T  GL+QCRGDL   DC+ C+  AV+Q+  +CP+T G +LQL GCY++Y++I FLG+ D 
Sbjct: 86  TARGLFQCRGDLSMPDCATCVARAVSQVGPLCPFTCGGALQLAGCYIKYDNISFLGQEDK 145

Query: 72  SIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVS-FKVSSSGFVEGFAQCLGDLTPADCTT 130
           ++  KKC  S   + +   RRD VL +L      F+   SG V+G  QC+GDLT ++C  
Sbjct: 146 TVVLKKCGSSEGYNTDGISRRDAVLTELVNGGGYFRAGGSGDVQGMGQCVGDLTVSECQD 205

Query: 131 CLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSHDDQVG--KTVAIIVGV 188
           CL  AI +LKN CG+A   D+FLA+CYARY   G        ++    G  KT AII+G+
Sbjct: 206 CLGTAIGRLKNDCGTAVFGDMFLAKCYARYSTDGAQHYAKSHNYKTNYGGEKTFAIIIGL 265

Query: 189 VA 190
           +A
Sbjct: 266 LA 267

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUJ2|CRR2_ARATH Cysteine-rich repeat secretory protein 2 OS=Arabidopsis thaliana GN=CRRSP2 PE=2 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/217 (38%), Positives = 125/217 (57%), Gaps = 17/217 (7%)

Query: 9   PEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGK 68
           P  TVYG+YQCRGDL  T CS C+ SAV Q+  +C  +Y   LQ+E C +RY++  FLG 
Sbjct: 79  PTVTVYGIYQCRGDLDPTACSTCVSSAVAQVGALCSNSYSGFLQMENCLIRYDNKSFLGV 138

Query: 69  LDTSIWYKKCSKSVN-NDVEFFKRRDDVLADLQTA-VSFKVSSSGFVEGFAQCLGDLTPA 126
            D ++   KC + +  ND +   +  DV+  L T   S++   +G V+G AQC GDL+ +
Sbjct: 139 QDKTLILNKCGQPMEFNDQDALTKASDVIGSLGTGDGSYRTGGNGNVQGVAQCSGDLSTS 198

Query: 127 DCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSH-----------D 175
            C  CL++AI +LK+ CG A    V+L++CYAR+   G +       +           D
Sbjct: 199 QCQDCLSDAIGRLKSDCGMAQGGYVYLSKCYARFSVGGSHARQTPGPNFGHEGEKGNKDD 258

Query: 176 DQVGKTVAIIVGVVAGLAILIVFLSI----CRRAMER 208
           + VGKT+AII+G+V  + +L+VFL+     CR+  + 
Sbjct: 259 NGVGKTLAIIIGIVTLIILLVVFLAFVGKCCRKLQDE 295

Arabidopsis thaliana (taxid: 3702)

>sp|O22784|CRR11_ARATH Cysteine-rich repeat secretory protein 11 OS=Arabidopsis thaliana GN=CRRSP11 PE=2 SV=2

 Score = 97.4 bits (241), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 98/215 (45%), Gaps = 24/215 (11%)

Query: 15  GLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIW 74
           GL+QCRGDL   DC  C+         +C  T  A +QL GCY+ YE   F       + 
Sbjct: 88  GLFQCRGDLSNNDCYNCVSRLPVLSGKLCGKTIAARVQLSGCYLLYEISGFAQISGMELL 147

Query: 75  YKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGF-------VEGFAQCLGDLTPAD 127
           +K C K+      F +RRD     +Q  V   V   GF       V    QC GD+  +D
Sbjct: 148 FKTCGKNNVAGTGFEQRRDTAFGVMQNGV---VQGHGFYATTYESVYVLGQCEGDIGDSD 204

Query: 128 CTTCLAEAIAKLKNLCGSAPAADVFLAQCYARY--WASG------------YYDLTVDSS 173
           C+ C+  A+ + +  CGS+ +  ++L +C+  Y  + +G                +  SS
Sbjct: 205 CSGCIKNALQRAQVECGSSISGQIYLHKCFVGYSFYPNGVPKRSSPYPSSGSSGSSSSSS 264

Query: 174 HDDQVGKTVAIIVGVVAGLAILIVFLSICRRAMER 208
                GKTVAIIVG  AG+  L++ L   +  M++
Sbjct: 265 SSGTTGKTVAIIVGGTAGVGFLVICLLFVKNLMKK 299

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NM73|CRR3_ARATH Cysteine-rich repeat secretory protein 3 OS=Arabidopsis thaliana GN=CRRSP3 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 95/222 (42%), Gaps = 35/222 (15%)

Query: 16  LYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWY 75
           L+QCRGDL   DC  C+         +C  T  + +QL GCY+ YE   F       + +
Sbjct: 87  LFQCRGDLSNHDCYNCVSRLPVLSDKLCGKTIASRVQLSGCYLLYEVSGFSQISGMEMLF 146

Query: 76  KKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGF-------VEGFAQCLGDLTPADC 128
           K C K+      F +RRD     +Q  V   VS  GF       V    QC GD+   DC
Sbjct: 147 KTCGKNNIAGTGFEERRDTAFGVMQNGV---VSGHGFYATTYESVYVLGQCEGDVGDTDC 203

Query: 129 TTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTV------------------ 170
           + C+  A+ K +  CGS+ +  ++L +C+  Y    YY   V                  
Sbjct: 204 SGCVKNALEKAQVECGSSISGQIYLHKCFIAY---SYYPNGVPRRSSSSSSSSSSSSSGS 260

Query: 171 ----DSSHDDQVGKTVAIIVGVVAGLAILIVFLSICRRAMER 208
                S+     GKTVAIIVG  AG+  L++ L   +  M +
Sbjct: 261 SNSDPSTSTGATGKTVAIIVGGAAGVGFLVICLLFAKNLMRK 302

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXV7|CRR56_ARATH Cysteine-rich repeat secretory protein 56 OS=Arabidopsis thaliana GN=CRRSP56 PE=1 SV=2

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 22/226 (9%)

Query: 5   TSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCP------YTYGASLQLEGCYV 58
           + T     V G++QCRGDL+   C  C+      +S +C           A + L GCY+
Sbjct: 70  SGTDNTTAVIGVFQCRGDLQNAQCYDCVSKIPKLVSKLCGGGRDDGNVVAARVHLAGCYI 129

Query: 59  RYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVS------------FK 106
           RYE   F     T + ++ C K  +ND  F  +R+      +  V             F 
Sbjct: 130 RYESSGFRQTSGTEMLFRVCGKKDSNDPGFVGKRETAFGMAENGVKTGSSGGGGGGGGFY 189

Query: 107 VSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYA--RYWASG 164
                 V    QC G L  +DC  C+ +   K K+ CG + +  V+L +C+    Y++ G
Sbjct: 190 AGQYESVYVLGQCEGSLGNSDCGECVKDGFEKAKSECGESNSGQVYLQKCFVSYSYYSHG 249

Query: 165 YYDLTVDSSHD--DQVGKTVAIIVGVVAGLAILIVFLSICRRAMER 208
             ++   S  +      +T+A+ VG V  L  +IV L + R AM++
Sbjct: 250 VPNIEPLSGGEKRQHTERTIALAVGGVFVLGFVIVCLLVLRSAMKK 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV60|CRR55_ARATH Cysteine-rich repeat secretory protein 55 OS=Arabidopsis thaliana GN=CRRSP55 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 80/168 (47%), Gaps = 14/168 (8%)

Query: 13  VYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTS 72
           VYGL QCRGD+  TDCS CI+ A  +I  VC     + +  + C++RY   +F+GKLDT 
Sbjct: 74  VYGLAQCRGDISNTDCSTCIQDAAKKIREVCQNQSDSRILYDFCFLRYSQENFIGKLDTG 133

Query: 73  ---IWYKKCS------KSVNNDVE--FFK-RRDDVLADLQTAVSFKVSSSGFV--EGFAQ 118
              I++   +      K  +N++   F K R + VL   +     K   + FV   G  Q
Sbjct: 134 AGLIYFNVANVTEIDPKKFDNELGALFDKIRSEAVLPKNKGLGKGKTKLTPFVTLNGLVQ 193

Query: 119 CLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYY 166
           C  DL+  DC  C A A+      C +     V  + CY RY    +Y
Sbjct: 194 CTRDLSELDCAQCFATAVGSFMTTCHNKKGCRVLYSSCYVRYEFYPFY 241

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH41|CRR7_ARATH Putative cysteine-rich repeat secretory protein 7 OS=Arabidopsis thaliana GN=CRRSP7 PE=3 SV=2

 Score = 81.3 bits (199), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 16/165 (9%)

Query: 12  TVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDT 71
           TVYG++ CRGD+ TT CS C+++A  +I+  C     A +  + C VRY ++ F  + ++
Sbjct: 75  TVYGMFLCRGDINTTSCSDCVQTAAIEIATNCTLNKRAFIYYDECMVRYSNVSFFSEFES 134

Query: 72  -SIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVE---------------G 115
             +  +   +S  N   F +   + L  L   VS       FVE                
Sbjct: 135 KPVIVRYSLRSAPNSNRFNQTLSNKLDQLIPNVSPSTLIPYFVEDQERVTQLEGSYDLVS 194

Query: 116 FAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARY 160
             QC  DL P++CT CL  A A +   CG   +A +F  +C  RY
Sbjct: 195 MIQCSPDLDPSNCTICLRFAYATVSTCCGVPSSALIFTPKCILRY 239

Arabidopsis thaliana (taxid: 3702)

>sp|O49564|CRK27_ARATH Cysteine-rich receptor-like protein kinase 27 OS=Arabidopsis thaliana GN=CRK27 PE=3 SV=2

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 90/214 (42%), Gaps = 33/214 (15%)

Query: 19  CRGDLKTT-DCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIW-YK 76
           CRGD+K   DC  CI +A  Q+   CP    A++ LE C  RY     LG+++   + Y 
Sbjct: 83  CRGDVKPNQDCISCITTAAKQLVESCPNIIEANIWLEKCMFRYTSRIILGQMEPVPFSYT 142

Query: 77  KCSKSVNNDVEFFKRRDDVL---------ADLQTAVSFKVSSSGFVEGFAQCLGDLTPAD 127
             + SV +   F K   D+L         A+    V F     G +   AQC  DL+ +D
Sbjct: 143 SSNVSVTDKEGFSKGLGDLLDSLGAKIDAANETKEVKFAAGVKGTIYALAQCTPDLSESD 202

Query: 128 CTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVD-------SSHDDQVGK 180
           C  CLA+  A +   C            CY R+    ++DL+V        SSH++   +
Sbjct: 203 CRICLAQIFAGVPTCCDGKTGGWWTNPSCYFRFEVYPFFDLSVTSEQKQPLSSHNNNTRR 262

Query: 181 T---------------VAIIVGVVAGLAILIVFL 199
           +               V  IV ++ GL  L ++L
Sbjct: 263 SDQGKSKDRSKTLIFAVVPIVAIILGLVFLFIYL 296

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
255541224	290	kinase, putative [Ricinus communis] gi|2	0.990	0.710	0.796	1e-95
296089184	396	unnamed protein product [Vitis vinifera]	1.0	0.525	0.779	1e-92
359489437	290	PREDICTED: cysteine-rich repeat secretor	0.990	0.710	0.787	5e-92
224127338	298	predicted protein [Populus trichocarpa]	1.0	0.697	0.798	2e-91
356495157	294	PREDICTED: cysteine-rich repeat secretor	0.990	0.700	0.699	3e-86
356498234	289	PREDICTED: cysteine-rich repeat secretor	0.980	0.705	0.742	1e-84
356537647	289	PREDICTED: cysteine-rich repeat secretor	0.980	0.705	0.723	9e-82
449498931	299	PREDICTED: LOW QUALITY PROTEIN: cysteine	0.990	0.688	0.655	3e-78
449454534	300	PREDICTED: cysteine-rich repeat secretor	0.990	0.686	0.655	3e-78
297817390	287	hypothetical protein ARALYDRAFT_486544 [	0.985	0.714	0.652	6e-78

>gi|255541224|ref|XP_002511676.1| kinase, putative [Ricinus communis] gi|223548856|gb|EEF50345.1| kinase, putative [Ricinus communis]

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 164/206 (79%), Positives = 186/206 (90%)

Query: 1   MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           +GNGTS P EA+V+GLYQCRGDLKT DCSRCI+S VNQI LVCPY+YGA+LQLEGCY+RY
Sbjct: 84  IGNGTSAPAEASVFGLYQCRGDLKTIDCSRCIQSTVNQIGLVCPYSYGAALQLEGCYLRY 143

Query: 61  EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCL 120
           EH DFLG+LDTS+ YKKCSKSVNNDVEFF+RRDDVLADLQT + FKVSSSG VEG+AQCL
Sbjct: 144 EHNDFLGQLDTSLRYKKCSKSVNNDVEFFRRRDDVLADLQTGIGFKVSSSGLVEGYAQCL 203

Query: 121 GDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSHDDQVGK 180
           GDL  ADC++CLA  +  LKNLCGSA AADVFL QCYARYWASGYYD++VDSS++DQVGK
Sbjct: 204 GDLNSADCSSCLANVVGMLKNLCGSASAADVFLGQCYARYWASGYYDISVDSSNEDQVGK 263

Query: 181 TVAIIVGVVAGLAILIVFLSICRRAM 206
           TVAIIVGVVAGLA+LIV LS CR++M
Sbjct: 264 TVAIIVGVVAGLAVLIVLLSFCRKSM 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089184|emb|CBI38887.3| unnamed protein product [Vitis vinifera]

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 163/209 (77%), Positives = 186/209 (88%), Gaps = 1/209 (0%)

Query: 1   MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           MGNG+ST  E  VYGLYQCRGDLKTTDCSRCIESAV+QISLVCPY+YGA LQLEGCYVRY
Sbjct: 155 MGNGSSTSTEGAVYGLYQCRGDLKTTDCSRCIESAVSQISLVCPYSYGAGLQLEGCYVRY 214

Query: 61  EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCL 120
           EH+DFLG+LDTS+ YKKCSKSV+NDVEF++RRDDVLADLQTA  F+VSSSG V+GFAQCL
Sbjct: 215 EHVDFLGRLDTSLMYKKCSKSVSNDVEFYRRRDDVLADLQTATGFRVSSSGLVQGFAQCL 274

Query: 121 GDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDL-TVDSSHDDQVG 179
           GDL+  DC+ CLAEA+ KLKNLCGSA A+DVFL+QCYARYWASGYYD  +  SS+ DQVG
Sbjct: 275 GDLSSGDCSACLAEAVGKLKNLCGSASASDVFLSQCYARYWASGYYDFSSDSSSNQDQVG 334

Query: 180 KTVAIIVGVVAGLAILIVFLSICRRAMER 208
           KTVAIIVGV+AGLAI++V LS  RRA+ +
Sbjct: 335 KTVAIIVGVLAGLAIVVVLLSFLRRALGK 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489437|ref|XP_002274389.2| PREDICTED: cysteine-rich repeat secretory protein 15-like [Vitis vinifera]

 Score =  342 bits (877), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 163/207 (78%), Positives = 185/207 (89%), Gaps = 1/207 (0%)

Query: 1   MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           MGNG+ST  E  VYGLYQCRGDLKTTDCSRCIESAV+QISLVCPY+YGA LQLEGCYVRY
Sbjct: 83  MGNGSSTSTEGAVYGLYQCRGDLKTTDCSRCIESAVSQISLVCPYSYGAGLQLEGCYVRY 142

Query: 61  EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCL 120
           EH+DFLG+LDTS+ YKKCSKSV+NDVEF++RRDDVLADLQTA  F+VSSSG V+GFAQCL
Sbjct: 143 EHVDFLGRLDTSLMYKKCSKSVSNDVEFYRRRDDVLADLQTATGFRVSSSGLVQGFAQCL 202

Query: 121 GDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDL-TVDSSHDDQVG 179
           GDL+  DC+ CLAEA+ KLKNLCGSA A+DVFL+QCYARYWASGYYD  +  SS+ DQVG
Sbjct: 203 GDLSSGDCSACLAEAVGKLKNLCGSASASDVFLSQCYARYWASGYYDFSSDSSSNQDQVG 262

Query: 180 KTVAIIVGVVAGLAILIVFLSICRRAM 206
           KTVAIIVGV+AGLAI++V LS  RRA+
Sbjct: 263 KTVAIIVGVLAGLAIVVVLLSFLRRAL 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127338|ref|XP_002320049.1| predicted protein [Populus trichocarpa] gi|222860822|gb|EEE98364.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (873), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 166/208 (79%), Positives = 188/208 (90%)

Query: 1   MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           +GNG+STPPE   YGLYQCRGDL+T DCSRCIESAVNQISLVCPY+YGA+LQLEGCYVRY
Sbjct: 82  IGNGSSTPPEGICYGLYQCRGDLRTIDCSRCIESAVNQISLVCPYSYGAALQLEGCYVRY 141

Query: 61  EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCL 120
           EH+DFLG+LDTS+ +KKCS+SVNNDVEFFKRRDDVLADL TA+ FKVSSSG VEG+AQCL
Sbjct: 142 EHVDFLGRLDTSLRFKKCSRSVNNDVEFFKRRDDVLADLPTAMGFKVSSSGSVEGYAQCL 201

Query: 121 GDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSHDDQVGK 180
           GDL+ +DC+ CL  A+A+LKNLCGSA AADV+L QCYARYWASGYYD + DSS +D VGK
Sbjct: 202 GDLSSSDCSACLVAAVAQLKNLCGSAAAADVYLGQCYARYWASGYYDRSSDSSSEDDVGK 261

Query: 181 TVAIIVGVVAGLAILIVFLSICRRAMER 208
           TVAIIVGV+AGL+ILIVFLS CRRAM R
Sbjct: 262 TVAIIVGVLAGLSILIVFLSFCRRAMGR 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495157|ref|XP_003516447.1| PREDICTED: cysteine-rich repeat secretory protein 15-like [Glycine max]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 144/206 (69%), Positives = 178/206 (86%)

Query: 1   MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           +GNG+S+PPE ++YGLYQCR DL+  +CS+C++S V+QI L+CP  +GASLQLEGCY+RY
Sbjct: 83  IGNGSSSPPEGSIYGLYQCRADLRPNECSKCVKSCVDQIGLICPLAFGASLQLEGCYIRY 142

Query: 61  EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCL 120
           EH+DFLGK DTS+WYK+CSK+V ND EFF+RRDDVLADLQ A  F VS+SGFVEGFA CL
Sbjct: 143 EHVDFLGKPDTSLWYKRCSKAVANDAEFFRRRDDVLADLQVANGFGVSTSGFVEGFALCL 202

Query: 121 GDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSHDDQVGK 180
           GDL+ ADC++CL EA+ KL+++CGSA +ADVFLAQCYARYW +GYYD    S  DDQVGK
Sbjct: 203 GDLSMADCSSCLQEAVGKLRSICGSAASADVFLAQCYARYWEAGYYDEAESSKDDDQVGK 262

Query: 181 TVAIIVGVVAGLAILIVFLSICRRAM 206
           +VAIIVG++AGLAIL+V LSIC+RAM
Sbjct: 263 SVAIIVGILAGLAILVVILSICKRAM 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498234|ref|XP_003517958.1| PREDICTED: cysteine-rich repeat secretory protein 15-like [Glycine max]

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 153/206 (74%), Positives = 177/206 (85%), Gaps = 2/206 (0%)

Query: 1   MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           +GNG+STP E  VYGLYQCRGDL   DCS+C+   VNQI LVCPY  GASLQLEGC VRY
Sbjct: 83  IGNGSSTPQEGNVYGLYQCRGDLHPVDCSKCVGRLVNQIGLVCPYALGASLQLEGCLVRY 142

Query: 61  EHI-DFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQC 119
           EH  DFLGKLDTS+ YKKCSK+V +DVEFF+RRDDVLADLQTA  F+VSSSG VEGFAQC
Sbjct: 143 EHAGDFLGKLDTSLRYKKCSKAVTSDVEFFRRRDDVLADLQTANGFRVSSSGLVEGFAQC 202

Query: 120 LGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSHDDQVG 179
           LGDL+ +DC++CLA+A+ KLK+LCGSA  ADVFL QCYARYWASGYYD + DSS++DQVG
Sbjct: 203 LGDLSVSDCSSCLADAVGKLKSLCGSAATADVFLGQCYARYWASGYYDES-DSSNNDQVG 261

Query: 180 KTVAIIVGVVAGLAILIVFLSICRRA 205
           K+VAIIVGV AGLA+L+V LSIC++A
Sbjct: 262 KSVAIIVGVFAGLAVLVVLLSICKKA 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537647|ref|XP_003537337.1| PREDICTED: cysteine-rich repeat secretory protein 15-like [Glycine max]

 Score =  308 bits (789), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 149/206 (72%), Positives = 174/206 (84%), Gaps = 2/206 (0%)

Query: 1   MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           +GNG+ TP E +VYGLYQCRGDL   DCS+C+   VNQI LVCPY  GASLQLEGC VRY
Sbjct: 83  VGNGSLTPQEGSVYGLYQCRGDLHPIDCSKCVGRLVNQIGLVCPYALGASLQLEGCLVRY 142

Query: 61  EHI-DFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQC 119
           EH  DFLGKLDTS+ YKKCSK+  +DVEFF RRDDVLADLQTA  F+VSSSG VEGFAQC
Sbjct: 143 EHAGDFLGKLDTSLRYKKCSKAATSDVEFFHRRDDVLADLQTANGFRVSSSGIVEGFAQC 202

Query: 120 LGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSHDDQVG 179
           LGDL+ +DC++C+A+A+ KLK+LCGSA AAD+FL QCYARYWASGYY  + DSS++DQVG
Sbjct: 203 LGDLSVSDCSSCIADAVGKLKSLCGSAAAADLFLGQCYARYWASGYYHES-DSSNNDQVG 261

Query: 180 KTVAIIVGVVAGLAILIVFLSICRRA 205
           K+VAIIVGV AGLA+L+V LSIC+ A
Sbjct: 262 KSVAIIVGVFAGLAVLVVILSICKTA 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449498931|ref|XP_004160674.1| PREDICTED: LOW QUALITY PROTEIN: cysteine-rich repeat secretory protein 15-like [Cucumis sativus]

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 139/212 (65%), Positives = 169/212 (79%), Gaps = 6/212 (2%)

Query: 1   MGNGTST--PPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYV 58
           +GN +S     E  ++GLYQCRGDL T DCS+CI + V+QI L CP++YGA+LQ EGCYV
Sbjct: 87  IGNDSSNTIQLEGAIFGLYQCRGDLATIDCSKCIRNGVSQIHLACPFSYGATLQFEGCYV 146

Query: 59  RYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVS----FKVSSSGFVE 114
           RYEH DFLGKLDTS+ +KKCS S +ND+EFF+RRDDVLAD+Q        F+VSSSG V+
Sbjct: 147 RYEHFDFLGKLDTSVKFKKCSASSSNDIEFFRRRDDVLADMQAGAGAGNGFRVSSSGLVQ 206

Query: 115 GFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSH 174
           GFAQCLGDL+  DC++CLA+ + KLK+LCGSA AADVF+ QCYARYWASG+Y  +  S  
Sbjct: 207 GFAQCLGDLSSQDCSSCLADCVGKLKSLCGSAAAADVFMGQCYARYWASGFYPNSSVSPS 266

Query: 175 DDQVGKTVAIIVGVVAGLAILIVFLSICRRAM 206
           DDQ GKTVAII+GVVA LAIL+V LS+CRRAM
Sbjct: 267 DDQAGKTVAIIIGVVAALAILVVLLSVCRRAM 298

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454534|ref|XP_004145009.1| PREDICTED: cysteine-rich repeat secretory protein 15-like [Cucumis sativus] gi|449470850|ref|XP_004153128.1| PREDICTED: cysteine-rich repeat secretory protein 15-like [Cucumis sativus]

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 139/212 (65%), Positives = 169/212 (79%), Gaps = 6/212 (2%)

Query: 1   MGNGTST--PPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYV 58
           +GN +S     E  ++GLYQCRGDL T DCS+CI + V+QI L CP++YGA+LQ EGCYV
Sbjct: 88  IGNDSSNTIQLEGAIFGLYQCRGDLATIDCSKCIRNGVSQIHLACPFSYGATLQFEGCYV 147

Query: 59  RYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVS----FKVSSSGFVE 114
           RYEH DFLGKLDTS+ +KKCS S +ND+EFF+RRDDVLAD+Q        F+VSSSG V+
Sbjct: 148 RYEHFDFLGKLDTSVKFKKCSASSSNDIEFFRRRDDVLADMQAGAGAGNGFRVSSSGLVQ 207

Query: 115 GFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSH 174
           GFAQCLGDL+  DC++CLA+ + KLK+LCGSA AADVF+ QCYARYWASG+Y  +  S  
Sbjct: 208 GFAQCLGDLSSQDCSSCLADCVGKLKSLCGSAAAADVFMGQCYARYWASGFYPNSSVSPS 267

Query: 175 DDQVGKTVAIIVGVVAGLAILIVFLSICRRAM 206
           DDQ GKTVAII+GVVA LAIL+V LS+CRRAM
Sbjct: 268 DDQAGKTVAIIIGVVAALAILVVLLSVCRRAM 299

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817390|ref|XP_002876578.1| hypothetical protein ARALYDRAFT_486544 [Arabidopsis lyrata subsp. lyrata] gi|297322416|gb|EFH52837.1| hypothetical protein ARALYDRAFT_486544 [Arabidopsis lyrata subsp. lyrata]

 Score =  295 bits (756), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 135/207 (65%), Positives = 175/207 (84%), Gaps = 2/207 (0%)

Query: 4   GTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHI 63
           G  +   + V+GLYQCR DL+++DCS+CI+++V+QI+L+CPY+YGASLQLEGC++RYE  
Sbjct: 72  GNDSSSSSAVFGLYQCRDDLRSSDCSKCIQTSVDQITLICPYSYGASLQLEGCFLRYETN 131

Query: 64  DFLGKLDTSIWYKKCS-KSVNNDVEFFKRRDDVLADLQ-TAVSFKVSSSGFVEGFAQCLG 121
           DFLGK DTS+ YKKCS KSV ND +FFKRRDDVL+DL+ T + +KVS SG VEG+AQC+G
Sbjct: 132 DFLGKPDTSLRYKKCSSKSVENDYDFFKRRDDVLSDLESTQLGYKVSRSGLVEGYAQCVG 191

Query: 122 DLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSHDDQVGKT 181
           DL+P+DCT CLAE++ KLKNLCGSA AA+V+LAQCYARYW SGYYD + D ++ D VGK+
Sbjct: 192 DLSPSDCTACLAESVGKLKNLCGSAVAAEVYLAQCYARYWGSGYYDFSSDPTNGDHVGKS 251

Query: 182 VAIIVGVVAGLAILIVFLSICRRAMER 208
           +AIIVGV+AG AIL+V LS+CR +M +
Sbjct: 252 IAIIVGVIAGFAILVVLLSLCRNSMRK 278

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
TAIR|locus:2101811	279	PDLP8 "AT3G60720" [Arabidopsis	0.990	0.738	0.598	1.9e-67
TAIR|locus:2151709	298	PDLP7 "plasmodesmata-located p	0.769	0.536	0.460	2.4e-37
TAIR|locus:2065450	288	PDLP6 "AT2G01660" [Arabidopsis	0.985	0.711	0.384	1.2e-35
TAIR|locus:2033614	299	HWI1 "HOPW1-1-INDUCED GENE1" [	0.769	0.535	0.423	4.1e-33
TAIR|locus:2051089	304	PDLP3 "AT2G33330" [Arabidopsis	0.75	0.513	0.312	1.5e-19
TAIR|locus:2018314	307	PDLP2 "AT1G04520" [Arabidopsis	0.740	0.501	0.335	6.5e-19
TAIR|locus:2166091	263	AT5G48540 "AT5G48540" [Arabido	0.740	0.585	0.333	8.3e-19
TAIR|locus:2031311	284	AT1G63570 "AT1G63570" [Arabido	0.716	0.524	0.296	4.7e-16
TAIR|locus:2127323	642	CRK27 "cysteine-rich RLK (RECE	0.740	0.239	0.315	1e-13
TAIR|locus:2095662	252	AT3G22060 "AT3G22060" [Arabido	0.754	0.623	0.282	2.7e-13

TAIR|locus:2101811 PDLP8 "AT3G60720" [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 125/209 (59%), Positives = 164/209 (78%)

Query:     1 MGNGTSTPPEAT-VYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVR 59
             +GN +S+   ++ V+GLYQCR DL+++DCS+CI+++V+QI+L+CPY+YGASLQLEGC++R
Sbjct:    70 VGNDSSSSSSSSAVFGLYQCRDDLRSSDCSKCIQTSVDQITLICPYSYGASLQLEGCFLR 129

Query:    60 YEHIDFLGKLDTSIWYKKCS-KSVNNDVEFFKRRDDVLADLQ-TAVSFKVSSSGFVEGFA 117
             YE  DFLGK DTS+ YKKCS KSV ND +FFKRRDDVL+DL+ T + +KVS SG VEG+A
Sbjct:   130 YETNDFLGKPDTSLRYKKCSSKSVENDYDFFKRRDDVLSDLESTQLGYKVSRSGLVEGYA 189

Query:   118 QCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDSSHDDQ 177
             QC+GDL+P+DCT CLAE++ KLKNLCGSA AA+V+LAQCYARYW SGYYD + D ++ D 
Sbjct:   190 QCVGDLSPSDCTACLAESVGKLKNLCGSAVAAEVYLAQCYARYWGSGYYDFSSDPTNGDH 249

Query:   178 VGKTXXXXXXXXXXXXXXXXFLSICRRAM 206
             VGK+                 LS+CR +M
Sbjct:   250 VGKSIAIIVGVIAGFAILVVLLSLCRNSM 278

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151709 PDLP7 "plasmodesmata-located protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 76/165 (46%), Positives = 105/165 (63%)

Query:     1 MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
             MG+ +S     T  GL+QCRGDL   DC+ C+  AV+Q+  +CP+T G +LQL GCY++Y
Sbjct:    79 MGSSSSD----TARGLFQCRGDLSMPDCATCVARAVSQVGPLCPFTCGGALQLAGCYIKY 134

Query:    61 EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVS-FKVSSSGFVEGFAQC 119
             ++I FLG+ D ++  KKC  S   + +   RRD VL +L      F+   SG V+G  QC
Sbjct:   135 DNISFLGQEDKTVVLKKCGSSEGYNTDGISRRDAVLTELVNGGGYFRAGGSGDVQGMGQC 194

Query:   120 LGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASG 164
             +GDLT ++C  CL  AI +LKN CG+A   D+FLA+CYARY   G
Sbjct:   195 VGDLTVSECQDCLGTAIGRLKNDCGTAVFGDMFLAKCYARYSTDG 239

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2065450 PDLP6 "AT2G01660" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 83/216 (38%), Positives = 122/216 (56%)

Query:     3 NGTSTPPEATVYGLYQCRGDLKTT--DCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
             NG S    ++VYGLYQCRGDL +   DC+RC+  AV+++  +C    G +LQLEGC+V+Y
Sbjct:    69 NGISGD-SSSVYGLYQCRGDLSSGSGDCARCVARAVSRLGSLCAMASGGALQLEGCFVKY 127

Query:    61 EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAV--SFKVSSSGFVEGFAQ 118
             ++  FLG  D ++  ++C   V  + +   RRD V+  L  +   S++V  SG ++G AQ
Sbjct:   128 DNTTFLGVEDKTVVVRRCGPPVGYNSDEMTRRDSVVGSLAASSGGSYRVGVSGELQGVAQ 187

Query:   119 CLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGY------YDLTVDS 172
             C GDL+  +C  CL EAI +L+  CG A   DV+LA+CYARY A G       Y    ++
Sbjct:   188 CTGDLSATECQDCLMEAIGRLRTDCGGAAWGDVYLAKCYARYSARGGHSRANGYGGNRNN 247

Query:   173 SHDDQVGKTXXXXXXXXXXXXXXXXFLSICRRAMER 208
             + DD++ KT                FLS   ++ ER
Sbjct:   248 NDDDEIEKTLAIIVGLIAGVTLLVVFLSFMAKSCER 283

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2033614 HWI1 "HOPW1-1-INDUCED GENE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 69/163 (42%), Positives = 99/163 (60%)

Query:     5 TSTP-PEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHI 63
             T  P P  TVYG+YQCRGDL  T CS C+ SAV Q+  +C  +Y   LQ+E C +RY++ 
Sbjct:    74 TGKPEPTVTVYGIYQCRGDLDPTACSTCVSSAVAQVGALCSNSYSGFLQMENCLIRYDNK 133

Query:    64 DFLGKLDTSIWYKKCSKSVN-NDVEFFKRRDDVLADLQTAV-SFKVSSSGFVEGFAQCLG 121
              FLG  D ++   KC + +  ND +   +  DV+  L T   S++   +G V+G AQC G
Sbjct:   134 SFLGVQDKTLILNKCGQPMEFNDQDALTKASDVIGSLGTGDGSYRTGGNGNVQGVAQCSG 193

Query:   122 DLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASG 164
             DL+ + C  CL++AI +LK+ CG A    V+L++CYAR+   G
Sbjct:   194 DLSTSQCQDCLSDAIGRLKSDCGMAQGGYVYLSKCYARFSVGG 236

GO:0005576 "extracellular region" evidence=ISM

GO:0051707 "response to other organism" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2051089 PDLP3 "AT2G33330" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 50/160 (31%), Positives = 77/160 (48%)

Query:     5 TSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHID 64
             T T  + +V GL+QCRGDL   DC  C+         +C  T  A +QL GCY+ YE   
Sbjct:    78 TGTTSQTSVTGLFQCRGDLSNNDCYNCVSRLPVLSGKLCGKTIAARVQLSGCYLLYEISG 137

Query:    65 FLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAV----SFKVSSSGFVEGFAQCL 120
             F       + +K C K+      F +RRD     +Q  V     F  ++   V    QC 
Sbjct:   138 FAQISGMELLFKTCGKNNVAGTGFEQRRDTAFGVMQNGVVQGHGFYATTYESVYVLGQCE 197

Query:   121 GDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARY 160
             GD+  +DC+ C+  A+ + +  CGS+ +  ++L +C+  Y
Sbjct:   198 GDIGDSDCSGCIKNALQRAQVECGSSISGQIYLHKCFVGY 237

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009506 "plasmodesma" evidence=IDA

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IGI

GO:0046739 "spread of virus in multicellular host" evidence=IGI

TAIR|locus:2018314 PDLP2 "AT1G04520" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 57/170 (33%), Positives = 80/170 (47%)

Query:     4 GTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHI 63
             GTST    T+ GL+QCRGDL   DC  C+         +C  T  + +QL GCY+ YE  
Sbjct:    78 GTST---TTITGLFQCRGDLSNHDCYNCVSRLPVLSDKLCGKTIASRVQLSGCYLLYEVS 134

Query:    64 DFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGF-------VEGF 116
              F       + +K C K+      F +RRD     +Q  V   VS  GF       V   
Sbjct:   135 GFSQISGMEMLFKTCGKNNIAGTGFEERRDTAFGVMQNGV---VSGHGFYATTYESVYVL 191

Query:   117 AQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYY 166
              QC GD+   DC+ C+  A+ K +  CGS+ +  ++L +C+  Y    YY
Sbjct:   192 GQCEGDVGDTDCSGCVKNALEKAQVECGSSISGQIYLHKCFIAY---SYY 238

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009506 "plasmodesma" evidence=IDA

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IGI

GO:0046739 "spread of virus in multicellular host" evidence=IGI

TAIR|locus:2166091 AT5G48540 "AT5G48540" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 56/168 (33%), Positives = 80/168 (47%)

Query:    13 VYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTS 72
             VYGL QCRGD+  TDCS CI+ A  +I  VC     + +  + C++RY   +F+GKLDT 
Sbjct:    74 VYGLAQCRGDISNTDCSTCIQDAAKKIREVCQNQSDSRILYDFCFLRYSQENFIGKLDTG 133

Query:    73 ---IWYKKCS------KSVNNDVE--FFKRRDD-VLADLQTAVSFKVSSSGFV--EGFAQ 118
                I++   +      K  +N++   F K R + VL   +     K   + FV   G  Q
Sbjct:   134 AGLIYFNVANVTEIDPKKFDNELGALFDKIRSEAVLPKNKGLGKGKTKLTPFVTLNGLVQ 193

Query:   119 CLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYY 166
             C  DL+  DC  C A A+      C +     V  + CY RY    +Y
Sbjct:   194 CTRDLSELDCAQCFATAVGSFMTTCHNKKGCRVLYSSCYVRYEFYPFY 241

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2031311 AT1G63570 "AT1G63570" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 49/165 (29%), Positives = 81/165 (49%)

Query:    12 TVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDT 71
             TVYG++ CRGD+ TT CS C+++A  +I+  C     A +  + C VRY ++ F  + ++
Sbjct:    75 TVYGMFLCRGDINTTSCSDCVQTAAIEIATNCTLNKRAFIYYDECMVRYSNVSFFSEFES 134

Query:    72 S-IWYKKCSKSVNNDVEFFK----RRDDVLADLQ--TAVSFKVSSSGFV---EG------ 115
               +  +   +S  N   F +    + D ++ ++   T + + V     V   EG      
Sbjct:   135 KPVIVRYSLRSAPNSNRFNQTLSNKLDQLIPNVSPSTLIPYFVEDQERVTQLEGSYDLVS 194

Query:   116 FAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARY 160
               QC  DL P++CT CL  A A +   CG   +A +F  +C  RY
Sbjct:   195 MIQCSPDLDPSNCTICLRFAYATVSTCCGVPSSALIFTPKCILRY 239

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2127323 CRK27 "cysteine-rich RLK (RECEPTOR-like protein kinase) 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 52/165 (31%), Positives = 73/165 (44%)

Query:    19 CRGDLKTT-DCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLD-TSIWYK 76
             CRGD+K   DC  CI +A  Q+   CP    A++ LE C  RY     LG+++     Y 
Sbjct:    83 CRGDVKPNQDCISCITTAAKQLVESCPNIIEANIWLEKCMFRYTSRIILGQMEPVPFSYT 142

Query:    77 KCSKSVNNDVEFFKRRDDVL----ADLQTA-----VSFKVSSSGFVEGFAQCLGDLTPAD 127
               + SV +   F K   D+L    A +  A     V F     G +   AQC  DL+ +D
Sbjct:   143 SSNVSVTDKEGFSKGLGDLLDSLGAKIDAANETKEVKFAAGVKGTIYALAQCTPDLSESD 202

Query:   128 CTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTVDS 172
             C  CLA+  A +   C            CY R+    ++DL+V S
Sbjct:   203 CRICLAQIFAGVPTCCDGKTGGWWTNPSCYFRFEVYPFFDLSVTS 247

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2095662 AT3G22060 "AT3G22060" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 48/170 (28%), Positives = 75/170 (44%)

Query:     3 NGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEH 62
             + T   P   V GL  CRGD  ++DC  C+E+A+ ++   CP      +  + C V+Y  
Sbjct:    75 SSTGNTPN-NVNGLALCRGDASSSDCRSCLETAIPELRQRCPNNKAGIVWYDNCLVKYSS 133

Query:    63 IDFLGKLD-TSIWYKKCSKSVNNDVEFFKRRDDVLADLQ----TAVSFKVSSSGF----- 112
              +F GK+D  + +Y    K+V++   F  +   +L +L     T  + K+ ++G      
Sbjct:   134 TNFFGKIDFENRFYLYNVKNVSDPSTFNSQTKALLTELTKKATTRDNQKLFATGEKNIGK 193

Query:   113 --VEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARY 160
               + G  QC  DL    C  CL   I +L N C       V    C  RY
Sbjct:   194 NKLYGLVQCTRDLKSITCKACLNGIIGELPNCCDGKEGGRVVGGSCNFRY 243

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NKQ9	CRR15_ARATH	No assigned EC number	0.6802	0.9375	0.6989	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	208
pfam01657	106	pfam01657, Stress-antifung, Salt stress response/a	7e-18
pfam01657	106	pfam01657, Stress-antifung, Salt stress response/a	1e-15

>gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal

 Score = 75.2 bits (185), Expect = 7e-18
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query: 3   NGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEH 62
            GTS     TVYGL QCRGDL  +DC  C+ +AV+++   CP   G  +  + C++RYE 
Sbjct: 44  AGTSGAAPDTVYGLAQCRGDLSASDCRSCLATAVSELRRCCPNKKGGRIWYDSCFLRYES 103

Query: 63  IDF 65
             F
Sbjct: 104 YPF 106

This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106

>gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 75  YKKCSKSVNN-----DVEFFKRRDDVLADLQTAVS------FKVSSSGF----VEGFAQC 119
           +  CS + +      +  F    + +L+ L +  +      F   +SG     V G AQC
Sbjct: 1   FHLCSSNTSGNYTTANSTFESNLNALLSSLSSNAASSSGKGFAAGTSGAAPDTVYGLAQC 60

Query: 120 LGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGY 165
            GDL+ +DC +CLA A+++L+  C +     ++   C+ RY +  +
Sbjct: 61  RGDLSASDCRSCLATAVSELRRCCPNKKGGRIWYDSCFLRYESYPF 106

This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
PF01657	106	Stress-antifung: Salt stress response/antifungal;	99.87
PF01657	106	Stress-antifung: Salt stress response/antifungal;	99.74
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	96.45
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	95.56
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	94.11
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	93.46
PF14610	189	DUF4448: Protein of unknown function (DUF4448)	93.32
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	92.69
PF15102	146	TMEM154: TMEM154 protein family	90.77
PHA03265	402	envelope glycoprotein D; Provisional	88.53
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	85.84
PF11857	74	DUF3377: Domain of unknown function (DUF3377); Int	85.18
PF01299	306	Lamp: Lysosome-associated membrane glycoprotein (L	85.06
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	84.21
PF15012	56	DUF4519: Domain of unknown function (DUF4519)	83.32
PF12669	58	P12: Virus attachment protein p12 family	81.89
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	81.78
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	80.03

>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function

Probab=99.87  E-value=1.8e-22  Score=148.17  Aligned_cols=81  Identities=31%  Similarity=0.676  Sum_probs=64.8

Q ss_pred             chHHHHhHHHHHHHHHHhh------ccccc----CCcceEEEEeccCCCChhhHHHHHHHHHHHHHhhcCCCcccEEEcC
Q 028479           85 DVEFFKRRDDVLADLQTAV------SFKVS----SSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLA  154 (208)
Q Consensus        85 ~~~~~~~~~~ll~~l~~~a------~~~~~----~~~~vYgLaQCt~DLs~~dC~~CL~~a~~~~~~~c~~~~ggrv~~~  154 (208)
                      +..|..++..||..|...+      +|+++    +..+||||+||++||+++||..||+.++.+++.+|+.+.||+|+++
T Consensus        16 ~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~~~~C~~~~g~~v~~~   95 (106)
T PF01657_consen   16 NSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANISSCCPGSRGGRVWYD   95 (106)
T ss_dssp             T-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCHHHHTTSBSSEEEEES
T ss_pred             CchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHHHHhCCCCceEEEECC
Confidence            4556677889998887553      46554    3569999999999999999999999999999999999999999999


Q ss_pred             ceeEEEeccCC
Q 028479          155 QCYARYWASGY  165 (208)
Q Consensus       155 ~C~lRYe~~~F  165 (208)
                      +|+||||+|+|
T Consensus        96 ~C~lRY~~~~F  106 (106)
T PF01657_consen   96 SCFLRYENYPF  106 (106)
T ss_dssp             SEEEEEESS--
T ss_pred             CEEEEEECCCC
Confidence            99999999998

The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.

>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function

Probab=99.74  E-value=1.1e-18  Score=128.06  Aligned_cols=62  Identities=44%  Similarity=0.912  Sum_probs=50.9

Q ss_pred             CCCCCCCCcEEEEEeccCCCChhchHHHHHHHHHHHhhhCCCCcceEEEcceeEEEEeeeee
Q 028479            4 GTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDF   65 (208)
Q Consensus         4 ~~~~~~~~~vygl~~Cr~D~~~~~C~~Cl~~a~~~~~~~C~~~~~a~i~~~~C~lrys~~~f   65 (208)
                      |+.|.+++++|||+||++|+++++|..||+.++..+++.|+..++++||++.|+|||++++|
T Consensus        45 ~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~~~~C~~~~g~~v~~~~C~lRY~~~~F  106 (106)
T PF01657_consen   45 GSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANISSCCPGSRGGRVWYDSCFLRYENYPF  106 (106)
T ss_dssp             EE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCHHHHTTSBSSEEEEESSEEEEEESS--
T ss_pred             eecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHHHHhCCCCceEEEECCCEEEEEECCCC
Confidence            34567788999999999999999999999999999999999999999999999999999987

The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=96.45  E-value=0.0011  Score=49.69  Aligned_cols=33  Identities=30%  Similarity=0.447  Sum_probs=22.1

Q ss_pred             CCCCcEEEEeeHHHHHHHHHHHHHHH-HHHhhcC
Q 028479          176 DQVGKTVAIIVGVVAGLAILIVFLSI-CRRAMER  208 (208)
Q Consensus       176 ~~~~~~iaiv~~~~~~~~~~~~~~~~-~~~~~~~  208 (208)
                      .+.+.++.|++|++++++++++++.| +||++||
T Consensus        61 fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk   94 (122)
T PF01102_consen   61 FSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK   94 (122)
T ss_dssp             SS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             ccccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44567889999999988777776654 5555554

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=95.56  E-value=0.01  Score=35.53  Aligned_cols=26  Identities=15%  Similarity=0.152  Sum_probs=11.1

Q ss_pred             EEEeeHHHHHHHHHHHHHHHHHHhhcC
Q 028479          182 VAIIVGVVAGLAILIVFLSICRRAMER  208 (208)
Q Consensus       182 iaiv~~~~~~~~~~~~~~~~~~~~~~~  208 (208)
                      +++++|+++.+ +++++++|+++|++|
T Consensus        15 ~~VvVPV~vI~-~vl~~~l~~~~rR~k   40 (40)
T PF08693_consen   15 VGVVVPVGVII-IVLGAFLFFWYRRKK   40 (40)
T ss_pred             EEEEechHHHH-HHHHHHhheEEeccC
Confidence            44555554433 333333444444443

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=94.11  E-value=0.033  Score=32.81  Aligned_cols=21  Identities=52%  Similarity=0.822  Sum_probs=15.1

Q ss_pred             cEEEEeeHHHHHHHHHHHHHH
Q 028479          180 KTVAIIVGVVAGLAILIVFLS  200 (208)
Q Consensus       180 ~~iaiv~~~~~~~~~~~~~~~  200 (208)
                      .+++|+++++++++++++++.
T Consensus         4 s~IaIIv~V~vg~~iiii~~~   24 (38)
T PF02439_consen    4 STIAIIVAVVVGMAIIIICMF   24 (38)
T ss_pred             chhhHHHHHHHHHHHHHHHHH
Confidence            468889998888766665443

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=93.46  E-value=0.058  Score=38.70  Aligned_cols=20  Identities=35%  Similarity=0.272  Sum_probs=14.0

Q ss_pred             CCCCcEEEEeeHHHHHHHHH
Q 028479          176 DQVGKTVAIIVGVVAGLAIL  195 (208)
Q Consensus       176 ~~~~~~iaiv~~~~~~~~~~  195 (208)
                      .+++.+..|++++++++.++
T Consensus        63 ls~gaiagi~vg~~~~v~~l   82 (96)
T PTZ00382         63 LSTGAIAGISVAVVAVVGGL   82 (96)
T ss_pred             cccccEEEEEeehhhHHHHH
Confidence            45677899999877655433

>PF14610 DUF4448: Protein of unknown function (DUF4448)

Probab=93.32  E-value=0.055  Score=43.43  Aligned_cols=30  Identities=23%  Similarity=0.210  Sum_probs=22.5

Q ss_pred             CcEEEEeeHHHHHHHHHHHHHHHHHHhhcC
Q 028479          179 GKTVAIIVGVVAGLAILIVFLSICRRAMER  208 (208)
Q Consensus       179 ~~~iaiv~~~~~~~~~~~~~~~~~~~~~~~  208 (208)
                      ...++|+||++++++++++...++++|++|
T Consensus       157 ~~~laI~lPvvv~~~~~~~~~~~~~~R~~R  186 (189)
T PF14610_consen  157 KYALAIALPVVVVVLALIMYGFFFWNRKKR  186 (189)
T ss_pred             ceeEEEEccHHHHHHHHHHHhhheeeccce
Confidence            347999999998876776666677776654

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=92.69  E-value=0.034  Score=36.67  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=0.0

Q ss_pred             CcEEEEeeHHHHHHHHHHHHHHH
Q 028479          179 GKTVAIIVGVVAGLAILIVFLSI  201 (208)
Q Consensus       179 ~~~iaiv~~~~~~~~~~~~~~~~  201 (208)
                      ....++|.|+|+++++.++++.|
T Consensus         9 ~vlaavIaG~Vvgll~ailLIlf   31 (64)
T PF01034_consen    9 EVLAAVIAGGVVGLLFAILLILF   31 (64)
T ss_dssp             -----------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666666655444444443

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PF15102 TMEM154: TMEM154 protein family

Probab=90.77  E-value=0.13  Score=39.47  Aligned_cols=16  Identities=19%  Similarity=0.328  Sum_probs=9.5

Q ss_pred             EEEEeeHH-HHHHHHHH
Q 028479          181 TVAIIVGV-VAGLAILI  196 (208)
Q Consensus       181 ~iaiv~~~-~~~~~~~~  196 (208)
                      ++.|++|. +++++|++
T Consensus        58 iLmIlIP~VLLvlLLl~   74 (146)
T PF15102_consen   58 ILMILIPLVLLVLLLLS   74 (146)
T ss_pred             EEEEeHHHHHHHHHHHH
Confidence            78888884 44443333

>PHA03265 envelope glycoprotein D; Provisional

Probab=88.53  E-value=0.59  Score=40.97  Aligned_cols=29  Identities=38%  Similarity=0.578  Sum_probs=20.1

Q ss_pred             CcEEEEeeH-HHHHHHHHHHHHHHHHHhhc
Q 028479          179 GKTVAIIVG-VVAGLAILIVFLSICRRAME  207 (208)
Q Consensus       179 ~~~iaiv~~-~~~~~~~~~~~~~~~~~~~~  207 (208)
                      +.-+.|++| .+++|+++-+++.++|||+|
T Consensus       347 ~~~~g~~ig~~i~glv~vg~il~~~~rr~k  376 (402)
T PHA03265        347 STFVGISVGLGIAGLVLVGVILYVCLRRKK  376 (402)
T ss_pred             CcccceEEccchhhhhhhhHHHHHHhhhhh
Confidence            334555555 46678788888888888876

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=85.84  E-value=0.37  Score=37.34  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=12.1

Q ss_pred             EEEEeeHHHHHHHHHHHHHH
Q 028479          181 TVAIIVGVVAGLAILIVFLS  200 (208)
Q Consensus       181 ~iaiv~~~~~~~~~~~~~~~  200 (208)
                      +|.+||||-++++|++++++
T Consensus        51 VIGvVVGVGg~ill~il~lv   70 (154)
T PF04478_consen   51 VIGVVVGVGGPILLGILALV   70 (154)
T ss_pred             EEEEEecccHHHHHHHHHhh
Confidence            67888887555544444343

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA)

Probab=85.18  E-value=1.1  Score=30.45  Aligned_cols=26  Identities=27%  Similarity=0.434  Sum_probs=19.2

Q ss_pred             CCCCcEEEEeeHHHHHHHHHHHHHHH
Q 028479          176 DQVGKTVAIIVGVVAGLAILIVFLSI  201 (208)
Q Consensus       176 ~~~~~~iaiv~~~~~~~~~~~~~~~~  201 (208)
                      .++.++++|++|.++.++++.+++..
T Consensus        26 ~~~~~avaVviPl~L~LCiLvl~yai   51 (74)
T PF11857_consen   26 GGTVNAVAVVIPLVLLLCILVLIYAI   51 (74)
T ss_pred             CCceeEEEEeHHHHHHHHHHHHHHHh
Confidence            34566799999999888777665543

; GO: 0004222 metalloendopeptidase activity

>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear

Probab=85.06  E-value=0.39  Score=41.44  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=13.8

Q ss_pred             CcEEEEeeHHHHHHHHHHHHHHH
Q 028479          179 GKTVAIIVGVVAGLAILIVFLSI  201 (208)
Q Consensus       179 ~~~iaiv~~~~~~~~~~~~~~~~  201 (208)
                      ..+|-|+||++++++++++++.|
T Consensus       270 ~~~vPIaVG~~La~lvlivLiaY  292 (306)
T PF01299_consen  270 SDLVPIAVGAALAGLVLIVLIAY  292 (306)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhh
Confidence            56777778876654444444443

Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=84.21  E-value=0.32  Score=42.01  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=10.8

Q ss_pred             EEeeHHHHHHHHHHHHHHHHHHhhc
Q 028479          183 AIIVGVVAGLAILIVFLSICRRAME  207 (208)
Q Consensus       183 aiv~~~~~~~~~~~~~~~~~~~~~~  207 (208)
                      +.++.||+-+++++++++.+|.|+|
T Consensus       260 aSiiaIliIVLIMvIIYLILRYRRK  284 (299)
T PF02009_consen  260 ASIIAILIIVLIMVIIYLILRYRRK  284 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444333333444445555553

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>PF15012 DUF4519: Domain of unknown function (DUF4519)

Probab=83.32  E-value=0.39  Score=30.78  Aligned_cols=27  Identities=15%  Similarity=0.328  Sum_probs=20.9

Q ss_pred             CcEEEEeeHHHHHHHHHHHHHHHHHHh
Q 028479          179 GKTVAIIVGVVAGLAILIVFLSICRRA  205 (208)
Q Consensus       179 ~~~iaiv~~~~~~~~~~~~~~~~~~~~  205 (208)
                      .++.-||+|++++++++++++.|+..|
T Consensus        28 ~kv~tVVlP~l~~~~~~Ivv~vy~kTR   54 (56)
T PF15012_consen   28 QKVFTVVLPTLAAVFLFIVVFVYLKTR   54 (56)
T ss_pred             HhheeEehhHHHHHHHHHhheeEEecc
Confidence            457788999999888888777776654

>PF12669 P12: Virus attachment protein p12 family

Probab=81.89  E-value=2.2  Score=27.57  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=8.5

Q ss_pred             EeeHHHHHHHHHHHH-HHHHHHh
Q 028479          184 IIVGVVAGLAILIVF-LSICRRA  205 (208)
Q Consensus       184 iv~~~~~~~~~~~~~-~~~~~~~  205 (208)
                      |+++++++++++.++ ..++|+.
T Consensus         2 iII~~Ii~~~~~~v~~r~~~k~~   24 (58)
T PF12669_consen    2 IIIGIIILAAVAYVAIRKFIKDK   24 (58)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHh
Confidence            344444333233322 3344443

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=81.78  E-value=1.2  Score=26.62  Aligned_cols=28  Identities=36%  Similarity=0.507  Sum_probs=23.1

Q ss_pred             CCCCcEEEEeeHHHHHHHHHHHHHHHHH
Q 028479          176 DQVGKTVAIIVGVVAGLAILIVFLSICR  203 (208)
Q Consensus       176 ~~~~~~iaiv~~~~~~~~~~~~~~~~~~  203 (208)
                      ++..+.++|.++++++++++++++.++.
T Consensus         5 ~~~~~~vaIa~~VvVPV~vI~~vl~~~l   32 (40)
T PF08693_consen    5 SSNSNTVAIAVGVVVPVGVIIIVLGAFL   32 (40)
T ss_pred             cCCCceEEEEEEEEechHHHHHHHHHHh
Confidence            3456789999999999999999888764

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=80.03  E-value=2.9  Score=34.26  Aligned_cols=24  Identities=21%  Similarity=0.533  Sum_probs=12.3

Q ss_pred             CcEEEEeeHHHHHHHHHHHHHHHHH
Q 028479          179 GKTVAIIVGVVAGLAILIVFLSICR  203 (208)
Q Consensus       179 ~~~iaiv~~~~~~~~~~~~~~~~~~  203 (208)
                      ..+++||.|++.++ |+|++..++|
T Consensus        38 ~I~iaiVAG~~tVI-LVI~i~v~vR   61 (221)
T PF08374_consen   38 KIMIAIVAGIMTVI-LVIFIVVLVR   61 (221)
T ss_pred             eeeeeeecchhhhH-HHHHHHHHHH
Confidence            33467777766544 3333344444

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	208
3a2e_A	108	Crystal Structure Of Ginkbilobin-2, The Novel Antif		9e-06

>pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal Protein From Ginkgo Biloba Seeds Length = 108

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 12  TVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDF 65
           T YG   C+  +  +DC+ C+ + VN+I  +C    GA +QL  C+++YE   F
Sbjct: 55  TAYGRATCKQSISQSDCTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	208
2e79_A	108	Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect	5e-18
2e79_A	108	Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect	2e-13

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	208
3a2e_A	108	Ginkbilobin-2; domain 26 unknown function (DUF26),	99.89
2e79_A	108	Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect	99.88
3a2e_A	108	Ginkbilobin-2; domain 26 unknown function (DUF26),	99.8
2e79_A	108	Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect	99.78
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	95.43
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	94.67
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	94.5
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	93.49
2knc_B	79	Integrin beta-3; transmembrane signaling, protein	87.88
1afo_A	40	Glycophorin A; integral membrane protein, transmem	83.05

>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}

Probab=99.89  E-value=2.5e-23  Score=152.28  Aligned_cols=94  Identities=24%  Similarity=0.536  Sum_probs=77.7

Q ss_pred             cccccccCCC-cCCchHHHHhHHHHHHHHHHhh-----ccccc-----CCcceEEEEeccCCCChhhHHHHHHHHHHHHH
Q 028479           72 SIWYKKCSKS-VNNDVEFFKRRDDVLADLQTAV-----SFKVS-----SSGFVEGFAQCLGDLTPADCTTCLAEAIAKLK  140 (208)
Q Consensus        72 ~~~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~a-----~~~~~-----~~~~vYgLaQCt~DLs~~dC~~CL~~a~~~~~  140 (208)
                      ..++..|++. .+.+..|..+++.||..|...+     .|+++     +..+||||+||+|||++++|+.||+.++.+++
T Consensus         4 ~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~   83 (108)
T 3a2e_A            4 AFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRIF   83 (108)
T ss_dssp             CEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTHH
T ss_pred             ceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence            3455667654 3445667788999999987654     23221     23689999999999999999999999999999


Q ss_pred             hhcCCCcccEEEcCceeEEEeccCC
Q 028479          141 NLCGSAPAADVFLAQCYARYWASGY  165 (208)
Q Consensus       141 ~~c~~~~ggrv~~~~C~lRYe~~~F  165 (208)
                      ++|++++||+|++++|+||||+++|
T Consensus        84 ~~C~~~~g~~i~~~~C~lRY~~~~F  108 (108)
T 3a2e_A           84 SICNNAIGARVQLVDCFIQYEQRSF  108 (108)
T ss_dssp             HHTTSBSSEEEEETTEEEEEESSCC
T ss_pred             HHCCCCceEEEECCCEEEEEeCCcC
Confidence            9999999999999999999999998

>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}

Probab=99.80  E-value=4.4e-20  Score=134.95  Aligned_cols=59  Identities=32%  Similarity=0.763  Sum_probs=56.2

Q ss_pred             CCCCCcEEEEEeccCCCChhchHHHHHHHHHHHhhhCCCCcceEEEcceeEEEEeeeee
Q 028479            7 TPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDF   65 (208)
Q Consensus         7 ~~~~~~vygl~~Cr~D~~~~~C~~Cl~~a~~~~~~~C~~~~~a~i~~~~C~lrys~~~f   65 (208)
                      +.++++||||+|||+|+++++|+.||+.|+.++++.||++++++||++.|+||||+++|
T Consensus        50 ~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~~~C~~~~g~~i~~~~C~lRY~~~~F  108 (108)
T 3a2e_A           50 SGGAPTAYGRATCKQSISQSDCTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF  108 (108)
T ss_dssp             STTCCCEEEEEEECTTSCHHHHHHHHHHHHTTHHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred             CCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence            34568999999999999999999999999999999999999999999999999999987

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=95.43  E-value=0.0016  Score=37.85  Aligned_cols=30  Identities=33%  Similarity=0.512  Sum_probs=21.0

Q ss_pred             CCCcEEEEeeHHHHHHHHHHHHHHHHHHhh
Q 028479          177 QVGKTVAIIVGVVAGLAILIVFLSICRRAM  206 (208)
Q Consensus       177 ~~~~~iaiv~~~~~~~~~~~~~~~~~~~~~  206 (208)
                      +.+.+..||+++++++++++.+.+|++||+
T Consensus         9 s~GaIAGiVvG~v~gv~li~~l~~~~~rrr   38 (38)
T 2k1k_A            9 TGGEIVAVIFGLLLGAALLLGILVFRSRRA   38 (38)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCceeeeehHHHHHHHHHHHHHHHHeecC
Confidence            456677788888887777766666666653

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=94.67  E-value=0.011  Score=35.37  Aligned_cols=15  Identities=13%  Similarity=0.211  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHhh
Q 028479          192 LAILIVFLSICRRAM  206 (208)
Q Consensus       192 ~~~~~~~~~~~~~~~  206 (208)
                      ++++++.+.|++||+
T Consensus        24 ~~ii~~~~~~~~RRr   38 (44)
T 2ks1_B           24 LLVVALGIGLFMRRR   38 (44)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhhh
Confidence            333444444444444

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=94.50  E-value=0.0063  Score=36.32  Aligned_cols=26  Identities=19%  Similarity=0.404  Sum_probs=14.0

Q ss_pred             EEEEeeHHHHHHHHHHHHHHHHHHhh
Q 028479          181 TVAIIVGVVAGLAILIVFLSICRRAM  206 (208)
Q Consensus       181 ~iaiv~~~~~~~~~~~~~~~~~~~~~  206 (208)
                      ++++|+|+++.+++.+++..|+|||+
T Consensus        14 Ia~~vVGvll~vi~~l~~~~~~RRR~   39 (44)
T 2jwa_A           14 IISAVVGILLVVVLGVVFGILIKRRQ   39 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHhheehhh
Confidence            56667775543433344445666664

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=93.49  E-value=0.015  Score=34.75  Aligned_cols=15  Identities=20%  Similarity=0.255  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHhh
Q 028479          192 LAILIVFLSICRRAM  206 (208)
Q Consensus       192 ~~~~~~~~~~~~~~~  206 (208)
                      ++++++.+.|++||+
T Consensus        23 v~ii~~~~~~~~RRR   37 (44)
T 2l2t_A           23 LVIVGLTFAVYVRRK   37 (44)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhhh
Confidence            334444444555544

>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=87.88  E-value=0.1  Score=35.13  Aligned_cols=25  Identities=4%  Similarity=0.236  Sum_probs=17.4

Q ss_pred             cEEEEeeHHHHHHHHHHHHHHHHHH
Q 028479          180 KTVAIIVGVVAGLAILIVFLSICRR  204 (208)
Q Consensus       180 ~~iaiv~~~~~~~~~~~~~~~~~~~  204 (208)
                      .+++||+|++++++++.++++++||
T Consensus         9 n~~~Iv~gvi~gilliGllllliwk   33 (79)
T 2knc_B            9 DILVVLLSVMGAILLIGLAALLIWK   33 (79)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888877777666665555

>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A

Probab=83.05  E-value=0.76  Score=26.30  Aligned_cols=29  Identities=31%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             cEEEEeeHHHHHHHHHHHHHHHHHHhhcC
Q 028479          180 KTVAIIVGVVAGLAILIVFLSICRRAMER  208 (208)
Q Consensus       180 ~~iaiv~~~~~~~~~~~~~~~~~~~~~~~  208 (208)
                      .++.|++++.++++-.++++.++-||.+|
T Consensus        11 ~i~lII~~vmaGiIG~IllI~y~I~rl~K   39 (40)
T 1afo_A           11 EITLIIFGVMAGVIGTILLISYGIRRLIK   39 (40)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45566778888887777777776665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00