Citrus Sinensis ID: 028489

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MSSTLISNPVTNSDRSKRKKKKKASQSKESKQNQTQWKSETQQQIYSSKLIQALNHVNGASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILTHRLKLKFRKHKKVNRVSAPSAAAAATGSGRSKKAGFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAELLSVGGGSSSSSSAAPPTT
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHcccccccccccHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccccHcccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
msstlisnpvtnsdrskrkkkkkasqskeskqnqTQWKSETQQQIYSSKLIQALnhvngaspsaprrgRAVREAADRVLAVAAKGRTRWSRAILTHRLKLKfrkhkkvnrvsapsaaaaatgsgrskkaGFSVLRLKAKSLPAVQRKVRVLgrlvpgcrkqpfpvILEEATDYIAALEMQVRAMTALAELLSvgggssssssaapptt
Flexible Loop (DISEMBL)
msstlisnpvtnsdrskrkkkkkasqskeskqnqtqwkseTQQQIYSSKLIQALNHVngaspsaprrgRAVREAADRVLAvaakgrtrwsrailthrlklkfrkhkkvnrvsapsaaaaatgsgrskkAGFSVLRlkakslpavqrkvrvlgrlvpgcrkqpfpvILEEATDYIAALEMQVRAMTALAELLsvgggssssssaapptt
Low Complexity Region (SEG)
MSSTLISNPVTNSDRskrkkkkkasqskeskQNQTQWKSETQQQIYSSKLIQALNHVNGASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILThrlklkfrkhkkVNRVsapsaaaaatgsgrskkagFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTalaellsvgggssssssaaPPTT
Disordered region (IsUnstruct)
***************************************************************************DRVLAVAAKGRTRWSRAILTHRLKLKFRK**************************FSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAELLS****************
Disordered Region (DISOPRED)
********************************************IYSSKLIQ***********************DRVLAVAAKGRTRWSRAIL**********************************************************RLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAE*******************
Disordered Region (DISEMBL)
******************************************QQIYSSKLIQALNHVNG*************EAADRVLAVAAKGRTRWSRAILTHRLKLKFRK************************AGFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAELLS****************
Disordered Region (DISPRO)
**************************************SET*QQIYSSKLIQALNHVN**********************V**KGRTRWSRAILTHRLKLKFRKHKK*********************************LPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAELLSV***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSTLISNPVTNSDRSKRKKKKKASQSKESKQNQTQWKSETQQQIYSSKLIQALNHVNGASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILTHRLKLKFRKHKKVNRVSAPSAAAAATGSGRSKKAGFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAELLSVGGGSSSSSSAAPPTT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
Q9LSN7	230	Transcription factor bHLH	yes	no	0.725	0.656	0.616	4e-47
Q9C8Z9	221	Transcription factor bHLH	no	no	0.822	0.773	0.553	1e-41
O80482	207	Transcription factor bHLH	no	no	0.783	0.787	0.416	2e-30
Q9M9L6	211	Transcription factor bHLH	no	no	0.663	0.654	0.445	3e-26

>sp|Q9LSN7|BH147_ARATH Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147 PE=1 SV=1

 Score =  187 bits (475), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 98/159 (61%), Positives = 118/159 (74%), Gaps = 8/159 (5%)

Query: 36  QWKSETQQQIYSSKLIQALNHVNGASPSAP-------RRGRAVREAADRVLAVAAKGRTR 88
           +W+SE QQQIYS+KL+ AL  +  +   +        R GRAVRE ADR LAVAA+G+T 
Sbjct: 49  KWRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTL 108

Query: 89  WSRAILTHRLKLKFRKHKKVNRVSAPSAAAAATGSGRSKKAGFSVLRLKAKSLPAVQRKV 148
           WSRAIL+  +KLKFRKHK+  R+S P+     TGS RSKK   +VLRLKAK LPAVQRKV
Sbjct: 109 WSRAILSKAVKLKFRKHKR-QRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKV 167

Query: 149 RVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTAL 187
           +VL RLVPGCRKQ  PV+LEE TDYIAA+EMQ+R MTA+
Sbjct: 168 KVLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMTAI 206

Atypical bHLH transcription factor probably unable to bind DNA. Negatively regulates brassinosteroid signaling.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8Z9|BH148_ARATH Transcription factor bHLH148 OS=Arabidopsis thaliana GN=BHLH148 PE=1 SV=1

 Score =  169 bits (428), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/186 (55%), Positives = 123/186 (66%), Gaps = 15/186 (8%)

Query: 30  SKQNQTQWKSETQQQIYSSKLIQALNHVN-------GASPSAPRRGRAVREAADRVLAVA 82
           S +   +W+SE QQ+IYS+KL QAL  V         +SP+A +RG+AVREAADR LAV+
Sbjct: 41  SGEIHARWRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVS 100

Query: 83  AKGRTRWSRAILTHRLKLKFRKHKKVNRVSAPSAAAAATGSGRSKKAGFS--VLRLKAKS 140
           A+GRT WSRAIL +R+KLKFRK ++     A  A      S  ++       VLRL  KS
Sbjct: 101 ARGRTLWSRAILANRIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKS 160

Query: 141 LPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAELLSVGGGSSSS 200
           +P V RKVRVLGRLVPGC KQ  PVILEEATDYI ALEMQVRAM +L +LLS  G     
Sbjct: 161 IPDVNRKVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLSSYG----- 215

Query: 201 SSAAPP 206
            SA PP
Sbjct: 216 -SAPPP 220

Atypical bHLH transcription factor probably unable to bind DNA. Negatively regulates brassinosteroid signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|O80482|BH149_ARATH Transcription factor bHLH149 OS=Arabidopsis thaliana GN=BHLH149 PE=1 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/192 (41%), Positives = 113/192 (58%), Gaps = 29/192 (15%)

Query: 10  VTNSDRSKRKKKKKASQSKE--------SKQNQTQWKSETQQQIYSSKLIQALNHVNGAS 61
           + N+  S R+KK + S++ E        ++++  +WK+   QQIY+ KL++AL  V   S
Sbjct: 9   IENTGESSRRKKPRISETAEAEIEARRVNEESLKRWKTNRVQQIYACKLVEALRRVRQRS 68

Query: 62  PSAPRR---------GRAVREAADRVLAVAAKGRTRWSRAILTHRLKLKFRKHKKVNRVS 112
            +              R +R+ ADRVLA +A+G TRWSRAIL  R++ K           
Sbjct: 69  STTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILASRVRAKL---------K 119

Query: 113 APSAAAAATGSGRSKKAGFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATD 172
               A  +TG+ +S+K      R+K   LPAV+RK+++LGRLVPGCRK   P +L+EATD
Sbjct: 120 KHRKAKKSTGNCKSRKGLTETNRIK---LPAVERKLKILGRLVPGCRKVSVPNLLDEATD 176

Query: 173 YIAALEMQVRAM 184
           YIAALEMQVRAM
Sbjct: 177 YIAALEMQVRAM 188

Atypical bHLH transcription factor probably unable to bind DNA. Negatively regulates brassinosteroid signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9L6|BH150_ARATH Transcription factor bHLH150 OS=Arabidopsis thaliana GN=BHLH150 PE=1 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 91/157 (57%), Gaps = 19/157 (12%)

Query: 36  QWKSETQQQIYSSKLIQALNHVNGASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILT 95
           +W++ T Q++YS KL  AL           RR   VR+ AD+VLA  A+G TRWSRAIL 
Sbjct: 62  RWRATTAQKVYSLKLYDALQR--------SRRSATVRDTADKVLATTARGATRWSRAILV 113

Query: 96  HRLKLKFRKHKKVNRVSAPSAAAAATGSGRSKKAGFSVLRLKAKSLPAVQRKVRVLGRLV 155
            R     R+ +     SA +AA   +G    ++            L AV  +VRVLG LV
Sbjct: 114 SRFGTSLRRRRNTKPASALAAAIRGSGGSGRRR-----------KLSAVGNRVRVLGGLV 162

Query: 156 PGCRKQPFPVILEEATDYIAALEMQVRAMTALAELLS 192
           PGCR+   P +L+E  DYIAALEMQVRAMTAL+++LS
Sbjct: 163 PGCRRTALPELLDETADYIAALEMQVRAMTALSKILS 199

Atypical bHLH transcription factor probably unable to bind DNA. Negatively regulates brassinosteroid signaling.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
225431998	219	PREDICTED: transcription factor bHLH147	0.961	0.913	0.665	2e-59
255556428	224	transcription factor, putative [Ricinus	0.923	0.857	0.718	5e-59
356555987	202	PREDICTED: transcription factor bHLH147-	0.870	0.896	0.664	3e-58
356565374	214	PREDICTED: transcription factor bHLH148-	0.884	0.859	0.642	5e-58
449462138	206	PREDICTED: transcription factor bHLH147-	0.870	0.878	0.646	3e-57
449527139	206	PREDICTED: transcription factor bHLH147-	0.870	0.878	0.641	8e-57
224101533	231	predicted protein [Populus trichocarpa]	0.889	0.800	0.653	4e-56
356529115	202	PREDICTED: transcription factor bHLH148-	0.875	0.900	0.671	8e-56
356521755	210	PREDICTED: transcription factor bHLH147-	0.870	0.861	0.622	2e-54
357479017	201	Transcription factor bHLH148 [Medicago t	0.899	0.930	0.606	6e-54

>gi|225431998|ref|XP_002279307.1| PREDICTED: transcription factor bHLH147 [Vitis vinifera]

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 145/218 (66%), Positives = 167/218 (76%), Gaps = 18/218 (8%)

Query: 1   MSSTLISNPVTNSDRSKRKKKKKA-------SQSKESK-QNQTQWKSETQQQIYSSKLIQ 52
           M+S++ISNPVTNSDRS+   K+K        SQ ++ + QN T+WKS+ QQQ+YSSKL+Q
Sbjct: 1   MASSVISNPVTNSDRSRESSKRKKKKKNQIQSQVRDQQNQNHTKWKSQVQQQLYSSKLLQ 60

Query: 53  ALNHVN-GASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILTHRLKLKFRKHKKVNRV 111
           AL  V  G+S   PRRGRAVREAADR LAVAAKGRTRWSRAILT+RLKLKF KHK+  RV
Sbjct: 61  ALRQVRLGSSNETPRRGRAVREAADRALAVAAKGRTRWSRAILTNRLKLKFMKHKR-QRV 119

Query: 112 SAPSAAAAATGSGRSKKAGFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEAT 171
           +        TG  RSKK   S+LRLK K+LPAVQRKVRVLGRLVPGCRK P P ILEEAT
Sbjct: 120 TV-------TGQNRSKKPKVSILRLKGKNLPAVQRKVRVLGRLVPGCRKLPLPDILEEAT 172

Query: 172 DYIAALEMQVRAMTALAELLS-VGGGSSSSSSAAPPTT 208
           DYIAALEMQVRAMTAL ELLS  G G+S++SS +P  T
Sbjct: 173 DYIAALEMQVRAMTALTELLSGAGAGASTTSSNSPADT 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556428|ref|XP_002519248.1| transcription factor, putative [Ricinus communis] gi|223541563|gb|EEF43112.1| transcription factor, putative [Ricinus communis]

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 148/206 (71%), Positives = 164/206 (79%), Gaps = 14/206 (6%)

Query: 1   MSSTLISN---PVT---NSDRSKRKKKKKASQSKES-----KQNQTQWKSETQQQIYSSK 49
           M+STLISN   P+T   NSDRSKRKKKK++SQ+++      KQ   +WK+E QQQIYSSK
Sbjct: 1   MASTLISNHNNPLTTNTNSDRSKRKKKKRSSQNQQQVKDNQKQGHAKWKTEAQQQIYSSK 60

Query: 50  LIQALNHV--NGASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILTHRLKLKFRKHKK 107
           LIQAL+ V     SPSAPR+GRAVREAADR LA AAKGRTRWSRAILT R+KLKFRK  K
Sbjct: 61  LIQALSQVRLTPPSPSAPRQGRAVREAADRALAFAAKGRTRWSRAILTSRIKLKFRKQHK 120

Query: 108 VNRVSAPSAAAAATGSGRS-KKAGFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVI 166
             +VSAP+ + A TGS RS KK    V RLK KSLP VQRKVRVLGRLVPGCRKQP PVI
Sbjct: 121 RQKVSAPTGSVAVTGSNRSLKKPRVGVFRLKKKSLPTVQRKVRVLGRLVPGCRKQPLPVI 180

Query: 167 LEEATDYIAALEMQVRAMTALAELLS 192
           LEEATDYIAALEMQVRAM+ALAELLS
Sbjct: 181 LEEATDYIAALEMQVRAMSALAELLS 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555987|ref|XP_003546309.1| PREDICTED: transcription factor bHLH147-like [Glycine max]

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/197 (66%), Positives = 145/197 (73%), Gaps = 16/197 (8%)

Query: 1   MSSTLISNPVTNSDRSKRKKKKKASQSKESK----QNQTQWKSETQQQIYSSKLIQALNH 56
           MSS+LI+NP  +  R   + KKK    K+ +    Q+  +WKS  QQQ+YSSKL  AL  
Sbjct: 1   MSSSLIANPTADRSRDSHRTKKKKKSLKQHQLQHEQSHAKWKSHAQQQLYSSKLHHALAR 60

Query: 57  VNGASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILTHRLKLKFRK--HKKVNRVSAP 114
           VN  S  APRRGRAVREAADRVLAVAAKGRTRWSRAILT+RLKLKFRK  HK+   V   
Sbjct: 61  VN-ISGDAPRRGRAVREAADRVLAVAAKGRTRWSRAILTNRLKLKFRKPIHKRQKVV--- 116

Query: 115 SAAAAATGSGRSKKAGFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYI 174
                  G GR KKA FSVLRLK K+LPAVQRKVRVLGRLVPGCRK+P PVILEEA DYI
Sbjct: 117 ------VGPGRPKKARFSVLRLKGKTLPAVQRKVRVLGRLVPGCRKEPLPVILEEAIDYI 170

Query: 175 AALEMQVRAMTALAELL 191
            ALEMQVRAM ALA+LL
Sbjct: 171 PALEMQVRAMQALADLL 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565374|ref|XP_003550916.1| PREDICTED: transcription factor bHLH148-like [Glycine max]

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 126/196 (64%), Positives = 146/196 (74%), Gaps = 12/196 (6%)

Query: 5   LISNPVTNSDRSK--RKKKKKAS---QSKESKQNQTQWKSETQQQIYSSKLIQALNHVNG 59
           ++SNPV N+DRS+  +++KKKA    Q ++  Q+  +WKS+ QQQIYSSKL QAL  VN 
Sbjct: 15  MVSNPVPNTDRSRDAKRRKKKAQLRQQLRQEDQSNPKWKSQAQQQIYSSKLRQALARVNL 74

Query: 60  ASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILTHRLKLKFRKHKKVNRVSAPSAAAA 119
            S + PRRG+AVR+AADRVLAV AKGRTRWSRAILT+RLKLKF KHK+  RV+       
Sbjct: 75  GSSAPPRRGKAVRDAADRVLAVTAKGRTRWSRAILTNRLKLKFTKHKR-QRVT------I 127

Query: 120 ATGSGRSKKAGFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEM 179
            T   RSKK   SV RLK K  P VQRKVR LGRLVPGCRK+P PVILEEA DYI ALEM
Sbjct: 128 TTPPTRSKKPRVSVYRLKGKGSPGVQRKVRFLGRLVPGCRKEPLPVILEEAIDYIPALEM 187

Query: 180 QVRAMTALAELLSVGG 195
           QVRAM+AL  LLS GG
Sbjct: 188 QVRAMSALFNLLSGGG 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462138|ref|XP_004148798.1| PREDICTED: transcription factor bHLH147-like isoform 1 [Cucumis sativus] gi|449462140|ref|XP_004148799.1| PREDICTED: transcription factor bHLH147-like isoform 2 [Cucumis sativus]

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/201 (64%), Positives = 152/201 (75%), Gaps = 20/201 (9%)

Query: 1   MSSTLISNPVTNSDRSKRKKKKKASQ-----SKESKQNQTQ---WKSETQQQIYSSKLIQ 52
           M+S+++SN    SDR++    +K  +     +++  QNQ     WKS+ QQ+IYSSKL++
Sbjct: 1   MASSVLSN----SDRARESSSRKQKKKKSHGNRDHHQNQNHHIKWKSQAQQEIYSSKLVR 56

Query: 53  ALNHVN-GASPSAP-RRGRAVREAADRVLAVAAKGRTRWSRAILTHRLKLKFRKHKKVNR 110
           ALN V  G S  AP RRGRAVREAADRVLAVAAKGRTRWSRAILT+RLKLKFRK  K  R
Sbjct: 57  ALNQVRLGPSNEAPPRRGRAVREAADRVLAVAAKGRTRWSRAILTNRLKLKFRKAPKRQR 116

Query: 111 VSAPSAAAAATGSGRSKKAGFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEA 170
                 + +  G+ RSKK   SVLRL+ KSLPAVQRKVRVLGRLVPGCRK+P PVILEEA
Sbjct: 117 ------STSTAGNNRSKKPRVSVLRLRGKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEA 170

Query: 171 TDYIAALEMQVRAMTALAELL 191
           TDYIAALEMQVRAM+ALAELL
Sbjct: 171 TDYIAALEMQVRAMSALAELL 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527139|ref|XP_004170570.1| PREDICTED: transcription factor bHLH147-like isoform 1 [Cucumis sativus] gi|449527141|ref|XP_004170571.1| PREDICTED: transcription factor bHLH147-like isoform 2 [Cucumis sativus]

 Score =  225 bits (574), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 129/201 (64%), Positives = 152/201 (75%), Gaps = 20/201 (9%)

Query: 1   MSSTLISNPVTNSDRSKRKKKKKASQ-----SKESKQNQTQ---WKSETQQQIYSSKLIQ 52
           M+S+++SN    SDR++    +K  +     +++  QNQ     WKS+ QQ+IYSSKL++
Sbjct: 1   MASSVLSN----SDRARESSSRKQKKKKSHGNRDHHQNQNHHIKWKSQAQQEIYSSKLVR 56

Query: 53  ALNHVN-GASPSAP-RRGRAVREAADRVLAVAAKGRTRWSRAILTHRLKLKFRKHKKVNR 110
           ALN V  G S  AP RRGRAVREAADRVLAVAAKGRTRWSRAILT+RLK+KFRK  K  R
Sbjct: 57  ALNQVRLGPSNEAPPRRGRAVREAADRVLAVAAKGRTRWSRAILTNRLKVKFRKAPKRQR 116

Query: 111 VSAPSAAAAATGSGRSKKAGFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEA 170
                 + +  G+ RSKK   SVLRL+ KSLPAVQRKVRVLGRLVPGCRK+P PVILEEA
Sbjct: 117 ------STSTAGNNRSKKPRVSVLRLRGKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEA 170

Query: 171 TDYIAALEMQVRAMTALAELL 191
           TDYIAALEMQVRAM+ALAELL
Sbjct: 171 TDYIAALEMQVRAMSALAELL 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101533|ref|XP_002312320.1| predicted protein [Populus trichocarpa] gi|222852140|gb|EEE89687.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 130/199 (65%), Positives = 153/199 (76%), Gaps = 14/199 (7%)

Query: 7   SNPVTNSDRSKRKKKKKAS-QSKESKQNQT-----QWKSETQQQIYSSKLIQALNHVN-- 58
           +N   N+DR++RKKKKK+  Q  +SKQNQ      +WK+E QQQIYSSKLIQAL+ VN  
Sbjct: 17  TNANINTDRTRRKKKKKSLLQQHQSKQNQNSQSHAKWKTEAQQQIYSSKLIQALSQVNLN 76

Query: 59  GASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILTHRLKLKFRK--HKK----VNRVS 112
            +S SAPR+GRAVRE ADR LA AAKG+TRWSRAILT+R+KLKFRK  HK+     +  S
Sbjct: 77  PSSSSAPRQGRAVREVADRALAFAAKGKTRWSRAILTNRIKLKFRKQQHKRQRLASSSSS 136

Query: 113 APSAAAAATGSGRSKKAGFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATD 172
             +    A+ S  S+K   SVLRLK K LPAVQRKVRVLGRLVPGCRKQP P+ILEEATD
Sbjct: 137 GSTVVTTASNSRSSRKHKVSVLRLKGKGLPAVQRKVRVLGRLVPGCRKQPLPIILEEATD 196

Query: 173 YIAALEMQVRAMTALAELL 191
           YIAALEMQV+AM+A+AELL
Sbjct: 197 YIAALEMQVKAMSAIAELL 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529115|ref|XP_003533142.1| PREDICTED: transcription factor bHLH148-like [Glycine max]

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 131/195 (67%), Positives = 148/195 (75%), Gaps = 13/195 (6%)

Query: 1   MSSTLISNPVTNSDR-SKRKKKKKASQSKESKQNQTQWKSETQQQIYSSKLIQALNHVNG 59
           MSS+LI+NP  +  R S R KKKK S  +  +Q+  +WK+  QQQ+YSSKL QAL  VN 
Sbjct: 1   MSSSLIANPTADRSRDSHRTKKKKKSIKQHQQQHDAKWKTHAQQQLYSSKLHQALARVN- 59

Query: 60  ASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILTHRLKLKFRK--HKKVNRVSAPSAA 117
            S  APRRGRAVR+AADRVLAVAAKGRTRWSRAILT+RLK+KFRK  HK+   V      
Sbjct: 60  ISGDAPRRGRAVRDAADRVLAVAAKGRTRWSRAILTNRLKVKFRKPVHKRQKVV------ 113

Query: 118 AAATGSGR-SKKAGFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAA 176
               G GR  KKA FSVLRL+ K+LPAVQRKVRVLGRLVPGCRK+P PVILEEA DYI A
Sbjct: 114 --VVGPGRPKKKARFSVLRLRGKTLPAVQRKVRVLGRLVPGCRKEPLPVILEEAIDYIPA 171

Query: 177 LEMQVRAMTALAELL 191
           LEMQVRAM ALA+LL
Sbjct: 172 LEMQVRAMQALADLL 186

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521755|ref|XP_003529517.1| PREDICTED: transcription factor bHLH147-like [Glycine max]

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/196 (62%), Positives = 140/196 (71%), Gaps = 15/196 (7%)

Query: 2   SSTLISNPVTNSDRS---KRKKKK---KASQSKESKQNQTQWKSETQQQIYSSKLIQALN 55
           SS++ISNPV N+DRS   KR+KKK   +  Q ++  Q+  +WKS+ QQQIYSSKL QAL 
Sbjct: 4   SSSMISNPVPNTDRSRDAKRRKKKAQLRQQQQRQEDQSNPKWKSQAQQQIYSSKLRQALA 63

Query: 56  HVNGASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILTHRLKLKFRKHKKVNRVSAPS 115
            VN      PRRG+AVR+AADRVLAV AKG TRWSRAILT+RLKLKF KHK+    + P+
Sbjct: 64  RVNLGLAPPPRRGKAVRDAADRVLAVTAKGMTRWSRAILTNRLKLKFTKHKRQRLTTPPT 123

Query: 116 AAAAATGSGRSKKAGFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIA 175
                    RSKK   SV RLK K  P VQRKVR L RLVPGCRK+P PVILEEA DYI 
Sbjct: 124 ---------RSKKPRVSVYRLKGKGSPGVQRKVRFLARLVPGCRKEPLPVILEEAIDYIP 174

Query: 176 ALEMQVRAMTALAELL 191
           ALEMQVRAM+AL  LL
Sbjct: 175 ALEMQVRAMSALFNLL 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479017|ref|XP_003609794.1| Transcription factor bHLH148 [Medicago truncatula] gi|355510849|gb|AES91991.1| Transcription factor bHLH148 [Medicago truncatula]

 Score =  216 bits (549), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 125/206 (60%), Positives = 145/206 (70%), Gaps = 19/206 (9%)

Query: 3   STLISNPVTNSD--RSKRKKKKKASQSKESKQNQTQ----WKSETQQQIYSSKLIQALNH 56
           ST I N VTN+D  R  R+KK+K    K  +Q+Q Q    WKS+ QQQIYS+KL QA+  
Sbjct: 5   STTIPNIVTNTDISRDTRRKKRKNKTQKHHQQDQIQINPKWKSQEQQQIYSTKLRQAITR 64

Query: 57  VNGASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILTHRLKLKFRKHKKVNRVSAPSA 116
           VN  S S PRRG+AVREAADR LAV A+GRTRWSR IL  RLK+KFRK KK NRV+A   
Sbjct: 65  VN--SSSTPRRGKAVREAADRALAVTARGRTRWSRTILMTRLKIKFRK-KKPNRVTA--- 118

Query: 117 AAAATGSGRSKKAGFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAA 176
                 S RSKK+  +V RLK K +P++QRKVR LG LVPGC+K+P PVILEEA DYI A
Sbjct: 119 ----LPSTRSKKSRVNVFRLKGKVVPSMQRKVRFLGGLVPGCKKEPLPVILEEAIDYIPA 174

Query: 177 LEMQVRAMTALAELLSV---GGGSSS 199
           LEMQVRAM+AL  LLS    G G SS
Sbjct: 175 LEMQVRAMSALFNLLSASTSGAGVSS 200

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
TAIR|locus:2084339	221	AIF2 "ATBS1 Interacting Factor	0.254	0.239	0.830	3.9e-35
TAIR|locus:2086117	230	AIF3 "ATBS1 Interacting Factor	0.716	0.647	0.528	6.5e-35
TAIR|locus:2195291	207	AIF4 "ATBS1 Interacting Factor	0.211	0.212	0.772	6.4e-26
TAIR|locus:2074484	211	AIF1 "AtBS1(activation-tagged	0.524	0.516	0.416	9.3e-20

TAIR|locus:2084339 AIF2 "ATBS1 Interacting Factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
 Identities = 44/53 (83%), Positives = 45/53 (84%)

Query:   132 SVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAM 184
             SVLRL  KS+P V RKVRVLGRLVPGC KQ  PVILEEATDYI ALEMQVRAM
Sbjct:   152 SVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAM 204

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2086117 AIF3 "ATBS1 Interacting Factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 83/157 (52%), Positives = 99/157 (63%)

Query:    36 QWKSETQQQIYSSKLIQALNHV-------NGASPSAPRRGRAVREAADRVLAVAAKGRTR 88
             +W+SE QQQIYS+KL+ AL  +       + +S S PR GRAVRE ADR LAVAA+G+T 
Sbjct:    49 KWRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTL 108

Query:    89 WSRAILTXXXXXXXXXXXXVNRVXXXXXXXXXXXXXXXXXXXFSVLRLKAKSLPAVQRKV 148
             WSRAIL+              R+                    +VLRLKAK LPAVQRKV
Sbjct:   109 WSRAILSKAVKLKFRKHKR-QRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKV 167

Query:   149 RVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMT 185
             +VL RLVPGCRKQ  PV+LEE TDYIAA+EMQ+R MT
Sbjct:   168 KVLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMT 204

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2195291 AIF4 "ATBS1 Interacting Factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
 Identities = 34/44 (77%), Positives = 40/44 (90%)

Query:   141 LPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAM 184
             LPAV+RK+++LGRLVPGCRK   P +L+EATDYIAALEMQVRAM
Sbjct:   145 LPAVERKLKILGRLVPGCRKVSVPNLLDEATDYIAALEMQVRAM 188

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2074484 AIF1 "AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
 Identities = 50/120 (41%), Positives = 59/120 (49%)

Query:    66 RRGRAVREAADRVLAVAAKGRTRWSRAILTXXXXXXXXXXXXVNRVXXXXXXXXXXXXXX 125
             RR   VR+ AD+VLA  A+G TRWSRAIL                               
Sbjct:    84 RRSATVRDTADKVLATTARGATRWSRAILVSRFGTSLRRRRNTKPASALAAAIRGSGGSG 143

Query:   126 XXXXXFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMT 185
                        + + L AV  +VRVLG LVPGCR+   P +L+E  DYIAALEMQVRAMT
Sbjct:   144 -----------RRRKLSAVGNRVRVLGGLVPGCRRTALPELLDETADYIAALEMQVRAMT 192

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LSN7	BH147_ARATH	No assigned EC number	0.6163	0.7259	0.6565	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
smart00353	53	HLH helix loop helix domain.	98.03
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	97.97
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	97.6
PLN03217	93	transcription factor ATBS1; Provisional	96.25
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	93.49
KOG1318	411	consensus Helix loop helix transcription factor EB	91.19
KOG0561	373	consensus bHLH transcription factor [Transcription	90.95

>smart00353 HLH helix loop helix domain

Probab=98.03  E-value=1e-05  Score=54.19  Aligned_cols=42  Identities=24%  Similarity=0.351  Sum_probs=37.9

Q ss_pred             chHHHHHHHhhcccCC---CCCCCChhhHHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVP---GCRKQPFPVILEEATDYIAALEMQVR  182 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVP---Gg~~m~~~~LL~Et~dYI~~Lq~QV~  182 (208)
                      +..++..+..|+.|||   ++.+++...+|++|++||..|+.+++
T Consensus         8 R~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        8 RRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4578999999999999   56788999999999999999999874

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=97.97  E-value=1.1e-05  Score=54.83  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=38.2

Q ss_pred             chHHHHHHHhhcccCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGC---RKQPFPVILEEATDYIAALEMQV  181 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg---~~m~~~~LL~Et~dYI~~Lq~QV  181 (208)
                      +..++..+..|+.|||++   .+++...+|+.|++||..|+.++
T Consensus        16 R~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083          16 RERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            557899999999999999   78999999999999999999886

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=97.60  E-value=8e-05  Score=50.72  Aligned_cols=38  Identities=34%  Similarity=0.534  Sum_probs=34.7

Q ss_pred             chHHHHHHHhhcccCCCC-----CCCChhhHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGC-----RKQPFPVILEEATDYIAALE  178 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg-----~~m~~~~LL~Et~dYI~~Lq  178 (208)
                      ...|+..+..|+.|||.+     .+++-.++|++|+|||..||
T Consensus        13 R~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen   13 RDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            457999999999999998     56899999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>PLN03217 transcription factor ATBS1; Provisional

Probab=96.25  E-value=0.012  Score=45.60  Aligned_cols=55  Identities=25%  Similarity=0.383  Sum_probs=46.3

Q ss_pred             cCchHHHHHHHhhcccCCC------CCCCChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Q 028489          139 KSLPAVQRKVRVLGRLVPG------CRKQPFPVILEEATDYIAALEMQVRAMT-ALAELLSV  193 (208)
Q Consensus       139 ~~~~~V~~k~r~LrrLVPG------g~~m~~~~LL~Et~dYI~~Lq~QV~vm~-~L~~~l~~  193 (208)
                      ...+.|.+=+-.||.|+|-      +.+.....+|+||+.||..|.-.|+-|. .|+++|..
T Consensus        17 isddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t   78 (93)
T PLN03217         17 ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN   78 (93)
T ss_pred             CCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3466788889999999995      3457889999999999999999999886 58888865

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=93.49  E-value=0.069  Score=46.94  Aligned_cols=58  Identities=29%  Similarity=0.409  Sum_probs=44.7

Q ss_pred             hccCchHHHHHHHhhcccCCCCCCC-------ChhhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhcC
Q 028489          137 KAKSLPAVQRKVRVLGRLVPGCRKQ-------PFPVILEEATDYIAAL--------------EMQVRAMTALAELLSVG  194 (208)
Q Consensus       137 ~~~~~~~V~~k~r~LrrLVPGg~~m-------~~~~LL~Et~dYI~~L--------------q~QV~vm~~L~~~l~~~  194 (208)
                      ..+.+++|.+=-.-|+.|||-|..-       .-+-+|..++|||-+|              +.||-+|+.+..-|..+
T Consensus        70 EqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iIk~~YEqM  148 (229)
T KOG1319|consen   70 EQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIIKVNYEQM  148 (229)
T ss_pred             HHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778888899999999977644       4578999999999765              56677777777666654

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=91.19  E-value=0.25  Score=47.39  Aligned_cols=39  Identities=28%  Similarity=0.607  Sum_probs=34.1

Q ss_pred             chHHHHHHHhhcccCCCCCCC----ChhhHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGCRKQ----PFPVILEEATDYIAALEM  179 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg~~m----~~~~LL~Et~dYI~~Lq~  179 (208)
                      +..|+.++++|..|||.|..-    +...+|.-++|||..|+-
T Consensus       245 R~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq  287 (411)
T KOG1318|consen  245 RENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQ  287 (411)
T ss_pred             HHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHH
Confidence            678999999999999999532    578899999999998864

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=90.95  E-value=0.19  Score=46.99  Aligned_cols=39  Identities=28%  Similarity=0.410  Sum_probs=34.4

Q ss_pred             HHHHHHHhhcccCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 028489          143 AVQRKVRVLGRLVPG--CRKQPFPVILEEATDYIAALEMQV  181 (208)
Q Consensus       143 ~V~~k~r~LrrLVPG--g~~m~~~~LL~Et~dYI~~Lq~QV  181 (208)
                      .|+-=+..|+.|+|-  |+|+..+.+|+.|+|||..|+-|.
T Consensus        74 SINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~K  114 (373)
T KOG0561|consen   74 SINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHK  114 (373)
T ss_pred             hhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcc
Confidence            456678899999995  788999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	208
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	98.47
4ati_A	118	MITF, microphthalmia-associated transcription fact	98.2
4h10_B	71	Circadian locomoter output cycles protein kaput; B	98.09
1a0a_A	63	BHLH, protein (phosphate system positive regulator	97.96
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	97.91
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	97.87
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	97.82
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	97.81
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	97.69
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	97.35
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	97.22
4ath_A	83	MITF, microphthalmia-associated transcription fact	96.68
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	96.54
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	96.04
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	95.73
4f3l_A	361	Mclock, circadian locomoter output cycles protein	94.88
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	92.25
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	91.93

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=98.47  E-value=2.3e-07  Score=68.25  Aligned_cols=51  Identities=25%  Similarity=0.281  Sum_probs=45.3

Q ss_pred             chHHHHHHHhhcccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGC-RKQPFPVILEEATDYIAALEMQVRAMTALAELL  191 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg-~~m~~~~LL~Et~dYI~~Lq~QV~vm~~L~~~l  191 (208)
                      +..|+.++..|+.||||+ .+++-.++|++|++||..|+.||..|..=.+.|
T Consensus        18 R~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L   69 (82)
T 1am9_A           18 RSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL   69 (82)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            557999999999999998 799999999999999999999999988644433

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=98.20  E-value=2e-06  Score=67.31  Aligned_cols=47  Identities=23%  Similarity=0.401  Sum_probs=42.1

Q ss_pred             chHHHHHHHhhcccCCCCC----CCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGCR----KQPFPVILEEATDYIAALEMQVRAMTAL  187 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg~----~m~~~~LL~Et~dYI~~Lq~QV~vm~~L  187 (208)
                      +..|+.++..|+.|||+|.    +++-.++|++|++||..|+-|+..|+..
T Consensus        39 R~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~   89 (118)
T 4ati_A           39 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL   89 (118)
T ss_dssp             HHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5689999999999999986    4679999999999999999999988764

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=98.09  E-value=4.4e-06  Score=60.69  Aligned_cols=44  Identities=18%  Similarity=0.337  Sum_probs=39.8

Q ss_pred             chHHHHHHHhhcccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGC-RKQPFPVILEEATDYIAALEMQVRAM  184 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg-~~m~~~~LL~Et~dYI~~Lq~QV~vm  184 (208)
                      +..|+.++..|+.|||++ .+||-.++|++|++||..|+.++.-|
T Consensus        20 Rd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~   64 (71)
T 4h10_B           20 RDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWL   64 (71)
T ss_dssp             HHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence            568999999999999975 59999999999999999999988654

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=97.96  E-value=1.1e-06  Score=62.12  Aligned_cols=41  Identities=20%  Similarity=0.226  Sum_probs=36.3

Q ss_pred             chHHHHHHHhhcccCCCC-------CCCChhhHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGC-------RKQPFPVILEEATDYIAALEMQV  181 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg-------~~m~~~~LL~Et~dYI~~Lq~QV  181 (208)
                      +..|+..+..|+.|||+|       .+++-+++|++|+|||..|+-||
T Consensus        14 R~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~   61 (63)
T 1a0a_A           14 RNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence            568999999999999965       45569999999999999999876

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=97.91  E-value=2.4e-05  Score=57.03  Aligned_cols=48  Identities=21%  Similarity=0.244  Sum_probs=42.3

Q ss_pred             chHHHHHHHhhcccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGC--RKQPFPVILEEATDYIAALEMQVRAMTALA  188 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg--~~m~~~~LL~Et~dYI~~Lq~QV~vm~~L~  188 (208)
                      ...|+..+..|+.|||++  .+++-.++|.+|++||..|+.++.-|+.-.
T Consensus        14 R~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~   63 (83)
T 1nkp_B           14 RDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI   63 (83)
T ss_dssp             HHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999984  789999999999999999999888777533

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=97.87  E-value=2.4e-06  Score=59.74  Aligned_cols=41  Identities=24%  Similarity=0.345  Sum_probs=37.2

Q ss_pred             chHHHHHHHhhcccCCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGCR------KQPFPVILEEATDYIAALEMQV  181 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg~------~m~~~~LL~Et~dYI~~Lq~QV  181 (208)
                      ...|+..+..|+.|||+|.      +++-.++|++|++||..|+-|+
T Consensus        17 R~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~   63 (65)
T 1an4_A           17 RDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            5579999999999999987      6799999999999999999764

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=97.82  E-value=3.4e-05  Score=57.45  Aligned_cols=49  Identities=24%  Similarity=0.371  Sum_probs=42.6

Q ss_pred             chHHHHHHHhhcccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGC---RKQPFPVILEEATDYIAALEMQVRAMTALAE  189 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg---~~m~~~~LL~Et~dYI~~Lq~QV~vm~~L~~  189 (208)
                      ...|+..+..|+.+||++   .+++-.++|..|++||..|+-++.-+..-.+
T Consensus        18 R~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~   69 (88)
T 1nkp_A           18 RNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED   69 (88)
T ss_dssp             HHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            557999999999999975   6899999999999999999999887665443

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=97.81  E-value=2.4e-05  Score=56.79  Aligned_cols=51  Identities=22%  Similarity=0.247  Sum_probs=44.7

Q ss_pred             chHHHHHHHhhcccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGC--RKQPFPVILEEATDYIAALEMQVRAMTALAELL  191 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg--~~m~~~~LL~Et~dYI~~Lq~QV~vm~~L~~~l  191 (208)
                      ...|+..+..|+.|||++  .+++-.++|..|++||..|+-++.-|+.-.+-|
T Consensus        24 R~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L   76 (80)
T 1hlo_A           24 RDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL   76 (80)
T ss_dssp             HHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999986  589999999999999999999999888654433

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=97.69  E-value=1e-05  Score=58.77  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=35.3

Q ss_pred             chHHHHHHHhhcccCCCC----CCCChhhHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGC----RKQPFPVILEEATDYIAALE  178 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg----~~m~~~~LL~Et~dYI~~Lq  178 (208)
                      +..|++.+..|+.|||+|    .++|-.++|++|++||..|+
T Consensus        21 R~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~   62 (73)
T 4h10_A           21 RDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR   62 (73)
T ss_dssp             HHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHh
Confidence            568999999999999988    68999999999999999986

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=97.35  E-value=0.00051  Score=50.36  Aligned_cols=50  Identities=20%  Similarity=0.126  Sum_probs=42.2

Q ss_pred             chHHHHHHHhhcccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGC---RKQPFPVILEEATDYIAALEMQVRAMTALAEL  190 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg---~~m~~~~LL~Et~dYI~~Lq~QV~vm~~L~~~  190 (208)
                      +..++..+..|+.+||.+   .++....+|..|++||..|+-++.-|..-.+.
T Consensus        13 R~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~   65 (80)
T 1nlw_A           13 RAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ   65 (80)
T ss_dssp             HHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999965   57788999999999999999999877654443

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=97.22  E-value=0.00018  Score=52.45  Aligned_cols=43  Identities=33%  Similarity=0.397  Sum_probs=37.0

Q ss_pred             chHHHHHHHhhcccCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPG---CRKQ-PFPVILEEATDYIAALEMQVRA  183 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPG---g~~m-~~~~LL~Et~dYI~~Lq~QV~v  183 (208)
                      ...|+..+..|+.+||.   +++. .-.++|..|++||..|+-||+-
T Consensus        17 r~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e   63 (76)
T 3u5v_A           17 RRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRE   63 (76)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            55799999999999995   4454 6788999999999999999964

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=96.68  E-value=0.0029  Score=47.28  Aligned_cols=46  Identities=22%  Similarity=0.381  Sum_probs=37.9

Q ss_pred             chHHHHHHHhhcccCCCCC----CCChhhHHHHHHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGCR----KQPFPVILEEATDYIAALEMQVRAMTA  186 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg~----~m~~~~LL~Et~dYI~~Lq~QV~vm~~  186 (208)
                      +..|+.++..|..|||.+.    +.+-..+|.-++|||..|+-.+.=|..
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e   53 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD   53 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3469999999999999864    368899999999999999776654443

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=96.54  E-value=0.002  Score=46.07  Aligned_cols=41  Identities=27%  Similarity=0.364  Sum_probs=35.8

Q ss_pred             chHHHHHHHhhcccCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPG--CRKQPFPVILEEATDYIAALEMQV  181 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPG--g~~m~~~~LL~Et~dYI~~Lq~QV  181 (208)
                      ...|+.-+..|+.+||.  +.++.-.+.|..|++||.+|+-++
T Consensus        24 ~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L   66 (68)
T 1mdy_A           24 LSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             HHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999996  468899999999999999998654

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=96.04  E-value=0.0073  Score=42.00  Aligned_cols=41  Identities=24%  Similarity=0.271  Sum_probs=35.7

Q ss_pred             chHHHHHHHhhcccCCC---CCCCChhhHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPG---CRKQPFPVILEEATDYIAALEMQV  181 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPG---g~~m~~~~LL~Et~dYI~~Lq~QV  181 (208)
                      ...|+.-+..|+.+||.   +.++.-.+.|..|++||.+|+-++
T Consensus        14 ~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L   57 (60)
T 2ql2_B           14 MHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL   57 (60)
T ss_dssp             HHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence            44788999999999995   558899999999999999998765

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=95.73  E-value=0.012  Score=42.51  Aligned_cols=38  Identities=32%  Similarity=0.413  Sum_probs=33.4

Q ss_pred             chHHHHHHHhhcccCCC---CCCCChhhHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPG---CRKQPFPVILEEATDYIAALE  178 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPG---g~~m~~~~LL~Et~dYI~~Lq  178 (208)
                      ...|+.-+..|+++||.   +.++.--+.|..|+|||..||
T Consensus        26 m~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq   66 (68)
T 2lfh_A           26 LDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQ   66 (68)
T ss_dssp             SSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence            34788999999999985   468899999999999999997

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=94.88  E-value=0.028  Score=49.27  Aligned_cols=40  Identities=18%  Similarity=0.365  Sum_probs=36.1

Q ss_pred             chHHHHHHHhhcccCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVP-GCRKQPFPVILEEATDYIAALEMQ  180 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVP-Gg~~m~~~~LL~Et~dYI~~Lq~Q  180 (208)
                      +..++..+..|+.||| +..+||-.++|++|++||..|+.+
T Consensus        24 r~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~   64 (361)
T 4f3l_A           24 RDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET   64 (361)
T ss_dssp             HHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence            5689999999999999 566999999999999999998764

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=92.25  E-value=0.092  Score=46.67  Aligned_cols=39  Identities=23%  Similarity=0.194  Sum_probs=35.5

Q ss_pred             chHHHHHHHhhcccCC----CCCCCChhhHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVP----GCRKQPFPVILEEATDYIAALEM  179 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVP----Gg~~m~~~~LL~Et~dYI~~Lq~  179 (208)
                      +..++..+..|..|||    ...++|-.++|+.|++||+.|+.
T Consensus        25 R~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~   67 (387)
T 4f3l_B           25 RDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   67 (387)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence            5689999999999999    66799999999999999999874

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=91.93  E-value=0.23  Score=37.90  Aligned_cols=38  Identities=29%  Similarity=0.375  Sum_probs=32.3

Q ss_pred             HHHHHHHhhcccCCC---CCCCChhhHHHHHHHHHHHHHHH
Q 028489          143 AVQRKVRVLGRLVPG---CRKQPFPVILEEATDYIAALEMQ  180 (208)
Q Consensus       143 ~V~~k~r~LrrLVPG---g~~m~~~~LL~Et~dYI~~Lq~Q  180 (208)
                      .|++=+..|+++||.   ..++.--+.|.-|++||.+|+-.
T Consensus        39 ~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~   79 (97)
T 4aya_A           39 NMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIA   79 (97)
T ss_dssp             HHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence            478888999999984   55789999999999999988743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	208
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	98.05
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	98.04
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	97.89
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	97.86
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	97.68
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	97.58
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	97.13

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.9e-09  Score=73.71  Aligned_cols=44  Identities=27%  Similarity=0.326  Sum_probs=41.2

Q ss_pred             HHHHHHHhhcccCCCCC-CCChhhHHHHHHHHHHHHHHHHHHHHH
Q 028489          143 AVQRKVRVLGRLVPGCR-KQPFPVILEEATDYIAALEMQVRAMTA  186 (208)
Q Consensus       143 ~V~~k~r~LrrLVPGg~-~m~~~~LL~Et~dYI~~Lq~QV~vm~~  186 (208)
                      .|++++..|+.|||||. ++|-.++|++|+|||..|+-||..|+.
T Consensus         3 ~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~   47 (61)
T d1uklc_           3 SINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQ   47 (61)
T ss_dssp             CHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48899999999999986 899999999999999999999999875

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=3.5e-06  Score=59.54  Aligned_cols=47  Identities=26%  Similarity=0.320  Sum_probs=42.4

Q ss_pred             chHHHHHHHhhcccCCCCC-CCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGCR-KQPFPVILEEATDYIAALEMQVRAMTAL  187 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg~-~m~~~~LL~Et~dYI~~Lq~QV~vm~~L  187 (208)
                      +..|+..+..|+.|||++. +++-.++|++|++||..|+-|++.|..-
T Consensus        18 R~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e   65 (80)
T d1am9a_          18 RSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQE   65 (80)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5689999999999999975 8899999999999999999999887653

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=1.5e-06  Score=60.21  Aligned_cols=42  Identities=26%  Similarity=0.335  Sum_probs=37.5

Q ss_pred             CchHHHHHHHhhcccCCCCC--CCChhhHHHHHHHHHHHHHHHH
Q 028489          140 SLPAVQRKVRVLGRLVPGCR--KQPFPVILEEATDYIAALEMQV  181 (208)
Q Consensus       140 ~~~~V~~k~r~LrrLVPGg~--~m~~~~LL~Et~dYI~~Lq~QV  181 (208)
                      ....|+..+..|+.|||++.  +++-.++|++|++||.+|+.+|
T Consensus        23 Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l   66 (68)
T d1mdya_          23 RLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             HHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            35689999999999999854  7899999999999999999776

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=2.1e-06  Score=58.39  Aligned_cols=41  Identities=20%  Similarity=0.251  Sum_probs=36.7

Q ss_pred             chHHHHHHHhhcccCCC-------CCCCChhhHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPG-------CRKQPFPVILEEATDYIAALEMQV  181 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPG-------g~~m~~~~LL~Et~dYI~~Lq~QV  181 (208)
                      +..|+..+..|+.|||+       +.+++-..+|++|++||.+|+-+|
T Consensus        14 R~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_          14 RNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            55899999999999995       467899999999999999998765

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.7e-05  Score=55.43  Aligned_cols=49  Identities=20%  Similarity=0.135  Sum_probs=42.2

Q ss_pred             chHHHHHHHhhcccCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGCR---KQPFPVILEEATDYIAALEMQVRAMTALAE  189 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg~---~m~~~~LL~Et~dYI~~Lq~QV~vm~~L~~  189 (208)
                      +..|+..+..|+.|||++.   +++-.++|++|++||..|+-++..|..-.+
T Consensus        13 R~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~   64 (79)
T d1nlwa_          13 RAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQID   64 (79)
T ss_dssp             HHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5589999999999999764   678999999999999999999988765433

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=3.6e-05  Score=54.76  Aligned_cols=46  Identities=26%  Similarity=0.396  Sum_probs=40.8

Q ss_pred             chHHHHHHHhhcccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGC---RKQPFPVILEEATDYIAALEMQVRAMTA  186 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg---~~m~~~~LL~Et~dYI~~Lq~QV~vm~~  186 (208)
                      +..|++.+..|+.|||++   .+++-.++|++|++||..|+-++.-+..
T Consensus        18 R~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~   66 (88)
T d1nkpa_          18 RNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS   66 (88)
T ss_dssp             HHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999986   3679999999999999999999977754

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=6.5e-05  Score=52.84  Aligned_cols=46  Identities=22%  Similarity=0.289  Sum_probs=40.6

Q ss_pred             chHHHHHHHhhcccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGC--RKQPFPVILEEATDYIAALEMQVRAMTA  186 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg--~~m~~~~LL~Et~dYI~~Lq~QV~vm~~  186 (208)
                      ...|+..+..|+.|||++  .+++-.++|+.|++||..|+-++.-|..
T Consensus        14 R~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~   61 (83)
T d1nkpb_          14 RDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ   61 (83)
T ss_dssp             HHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            557999999999999974  5789999999999999999988876664

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=6.4e-05  Score=51.01  Aligned_cols=40  Identities=25%  Similarity=0.372  Sum_probs=34.9

Q ss_pred             chHHHHHHHhhcccCCCCC------CCChhhHHHHHHHHHHHHHHH
Q 028489          141 LPAVQRKVRVLGRLVPGCR------KQPFPVILEEATDYIAALEMQ  180 (208)
Q Consensus       141 ~~~V~~k~r~LrrLVPGg~------~m~~~~LL~Et~dYI~~Lq~Q  180 (208)
                      +..|+..+..|+.|||.+.      +++-..+|++|++||..||-+
T Consensus        17 R~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~   62 (65)
T d1an4a_          17 RDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS   62 (65)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            5689999999999999754      667788999999999999865