Citrus Sinensis ID: 028493

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MPSSELVMDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTLVDVYIID
Secondary Structure (PSIPRED)
ccccHHHHccccccccccccEEEEEEEEEccccccEEEEEEEEcccccEEEEEEEEEEcccccHHHHcccccccccccEEccccccEEEEEEcccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccEEEEccEEEEcccccccccEEEEccccccccHHEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEEEccHHHHHHHcccccccccccEccccEEEEEEEEEcccccccccccEEEEcccccccccHHHHccccccccccHHHHHccccccccccEEEccEEEEcccccccccEcEEEEEcccEEEccccccHHHHHHHHcHHHHHcHHHEEHccccc
Coil and Loop (DISEMBL)
mpsselvmdnknasstagKIIRCRAaisripgkplvmeeievdppkagEVRIKILCTSLchsdvtfwrstqppmavfprilgHEAVGVVEsvgggveevregdlvlpvfqgdcgecrdckspksnicskfvnkdnqsmprdgtnrfRDLKGEVIHNvlnvssfteytVVDVTHvvkitpdiplDIACLLscgvstgnyrTLVDVYIID
Flexible Loop (DISEMBL)
mpsselvmdnknasstagkiircraaisripgkplvmeeIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKspksnicskfvnkdnqsmprdGTNRFRDLKGEVIHNVlnvssfteyTVVDVTHVVKITPDIPLDIACLLscgvstgnyrtlvdvyiid
Low Complexity Region (SEG)
MPSSELVMDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILgheavgvvesvgggveevregDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTLVDVYIID
Disordered region (IsUnstruct)
******************KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSP*SNICSKF***************FRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTLVDVYII*
Disordered Region (DISOPRED)
*********************RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTLVDVYIID
Disordered Region (DISEMBL)
**************STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTLVDVYIID
Disordered Region (DISPRO)
*****************GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTLVDVYI**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSSELVMDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTLVDVYIID
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
Q9SK87	386	Alcohol dehydrogenase-lik	yes	no	0.889	0.479	0.634	2e-63
Q9FH04	390	Alcohol dehydrogenase-lik	no	no	0.903	0.482	0.642	9e-62
Q9SK86	388	Alcohol dehydrogenase-lik	no	no	0.908	0.487	0.594	3e-60
Q0V7W6	389	Alcohol dehydrogenase-lik	no	no	0.860	0.460	0.627	2e-59
P13603	380	Alcohol dehydrogenase 1 O	N/A	no	0.865	0.473	0.556	5e-53
P48977	380	Alcohol dehydrogenase OS=	N/A	no	0.889	0.486	0.563	6e-53
P12886	380	Alcohol dehydrogenase 1 O	N/A	no	0.865	0.473	0.556	2e-52
P06525	379	Alcohol dehydrogenase cla	no	no	0.884	0.485	0.550	2e-52
P14675	380	Alcohol dehydrogenase 3 O	N/A	no	0.889	0.486	0.557	1e-51
P14674	380	Alcohol dehydrogenase 2 O	N/A	no	0.889	0.486	0.557	1e-51

>sp|Q9SK87|ADHL2_ARATH Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1

 Score =  242 bits (617), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 118/186 (63%), Positives = 147/186 (79%), Gaps = 1/186 (0%)

Query: 12  NASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ 71
            AS T GK IRC+AAI R  G+PLV+EEI+VDPP+A EVRIKILCTSLCH+DVTFW+   
Sbjct: 3   KASITEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDS 62

Query: 72  PPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFV 131
            P+A FPRILGHEAVGVVES+G  V+  ++GD+VLPVF   C EC++C SPKSN C+K+ 
Sbjct: 63  GPLARFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYT 122

Query: 132 NKDNQSMPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           N    +  R G T+RF+D +GE IH+ + VSSFTEYTVVD+ H+VKI+P+IP+DIA LLS
Sbjct: 123 NDYLSNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLS 182

Query: 191 CGVSTG 196
           C V+TG
Sbjct: 183 CSVATG 188

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1

>sp|Q9FH04|ADHL7_ARATH Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1

 Score =  236 bits (602), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 148/193 (76%), Gaps = 5/193 (2%)

Query: 8   MDNKNASS---TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDV 64
           M+N N+SS   ++ K IRC+AA+SR  G+PLVMEEI V PP+  EVRI+I+CT+LCHSDV
Sbjct: 1   MENGNSSSDNKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDV 60

Query: 65  TFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKS 124
           TFW+   PP A FPRILGHEA+GVVESVG  V+EV EGD VLP F  DCG+C DCKS KS
Sbjct: 61  TFWKLQVPP-ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKS 119

Query: 125 NICSKFVNKDNQSMPR-DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPL 183
           N+CSKF  K +  MPR D ++RF DL GE + + LNVSSF+EYTV+DV +VVKI   IP 
Sbjct: 120 NLCSKFPFKVSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPP 179

Query: 184 DIACLLSCGVSTG 196
             ACLLSCGVSTG
Sbjct: 180 SRACLLSCGVSTG 192

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9SK86|ADHL1_ARATH Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1

 Score =  231 bits (588), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 113/190 (59%), Positives = 143/190 (75%), Gaps = 1/190 (0%)

Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
           MD    SS  GK I C+AAI R  G+ LV+E+I VDPP+A EVRIKILCTSLCH+D+TFW
Sbjct: 1   MDKTFFSSNEGKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFW 60

Query: 68  RSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC 127
           + +  P++ FPRILGHEAVGVVES+G  V+  ++GD+VLPVF   C EC+DCKS K+N C
Sbjct: 61  KLSFGPISRFPRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWC 120

Query: 128 SKFVNKDNQSMPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186
            ++      +  R G  +RF+D  GEVIH+ L VSSF+EYTVVD+ H+VKI+P+IP+D A
Sbjct: 121 DRYAEDFISNTRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKA 180

Query: 187 CLLSCGVSTG 196
            LLSCGVSTG
Sbjct: 181 ALLSCGVSTG 190

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q0V7W6|ADHL5_ARATH Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1

 Score =  228 bits (581), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 113/180 (62%), Positives = 141/180 (78%), Gaps = 1/180 (0%)

Query: 18  GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVF 77
           GK IRC+AA+SR PG+ LV+EEI VDPP+A EVRIKI+CTSLCH+DV+F +    P+A F
Sbjct: 12  GKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSGPLARF 71

Query: 78  PRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS 137
           PRILGHEAVGV+ES+G  V   ++GD+VLPVF   C ECRDCKS KSN C++F +    +
Sbjct: 72  PRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLSN 131

Query: 138 MPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
             R G T+RF+D  GE I++ L VSSF+EYTVVD+ H+VKI+PDIP+D A LLSCGVSTG
Sbjct: 132 TRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTG 191

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P13603|ADH1_TRIRP Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1

 Score =  207 bits (526), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 103/185 (55%), Positives = 134/185 (72%), Gaps = 5/185 (2%)

Query: 14  SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRST-QP 72
           S+TAG++I+CRAA++   GKPLV+EE+EV PP+AGEVR+KIL TSLCH+DV FW +  Q 
Sbjct: 2   SNTAGQVIKCRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQT 61

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-V 131
           P+  FPRI GHEA G+VESVG GV  ++ GD  LPVF G+CGEC  CKS +SN+C+   +
Sbjct: 62  PL--FPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCNLLRI 119

Query: 132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
           N D   M  D  +RF  +KG+ +H+ +  S+F+EYTVV    V KI PD PLD  C+LSC
Sbjct: 120 NTDRGVMINDNKSRF-SIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSC 178

Query: 192 GVSTG 196
           G+ TG
Sbjct: 179 GICTG 183

Trifolium repens (taxid: 3899)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P48977|ADH_MALDO Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1

 Score =  207 bits (526), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 107/190 (56%), Positives = 137/190 (72%), Gaps = 5/190 (2%)

Query: 14  SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRST-QP 72
           S+TAG++IRCRAA++   GKPLV+EE+EV PP+A EVRIKIL TSLCH+DV FW +  Q 
Sbjct: 2   SNTAGQVIRCRAAVAWEAGKPLVIEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKGQN 61

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-V 131
           P+  FPRI GHEA G+VESVG GV +++ GD VLPVF G+C +C  CKS +SN+C    +
Sbjct: 62  PL--FPRIYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKDCAHCKSEESNMCDLLRI 119

Query: 132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
           N D   M  DG +RF  +KG+ I++ +  S+F+EYTVV V  + KI P  PLD  CLLSC
Sbjct: 120 NTDRGVMLSDGKSRF-SIKGKPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCLLSC 178

Query: 192 GVSTGNYRTL 201
           G+STG   TL
Sbjct: 179 GISTGLGATL 188

Malus domestica (taxid: 3750)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P12886|ADH1_PEA Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/185 (55%), Positives = 132/185 (71%), Gaps = 5/185 (2%)

Query: 14  SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRST-QP 72
           S+T G+II+CRAA++   GKPLV+EE+EV PP+AGEVR+KIL TSLCH+DV FW +  Q 
Sbjct: 2   SNTVGQIIKCRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQT 61

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-V 131
           P+  FPRI GHEA G+VESVG GV  ++ GD  LPVF G+CGEC  CKS +SN+C    +
Sbjct: 62  PL--FPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRI 119

Query: 132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
           N D   M  D  +RF  +KG+ +H+ +  S+F+EYTVV    V KI PD PLD  C+LSC
Sbjct: 120 NTDRGVMLNDNKSRF-SIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSC 178

Query: 192 GVSTG 196
           G+ TG
Sbjct: 179 GICTG 183

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P06525|ADH1_ARATH Alcohol dehydrogenase class-P OS=Arabidopsis thaliana GN=ADH1 PE=1 SV=2

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 104/189 (55%), Positives = 134/189 (70%), Gaps = 5/189 (2%)

Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRST-QPP 73
           ST G+IIRC+AA++   GKPLV+EE+EV PP+  EVRIKIL TSLCH+DV FW +  Q P
Sbjct: 2   STTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQTP 61

Query: 74  MAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-VN 132
           +  FPRI GHEA G+VESVG GV +++ GD VLP+F G+CGECR C S +SN+C    +N
Sbjct: 62  L--FPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRIN 119

Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            +   M  DG +RF  + G+ I++ L  S+F+EYTVV    V KI PD PLD  C++SCG
Sbjct: 120 TERGGMIHDGESRF-SINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCG 178

Query: 193 VSTGNYRTL 201
           +STG   TL
Sbjct: 179 LSTGLGATL 187

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P14675|ADH3_SOLTU Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1

 Score =  202 bits (514), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/190 (55%), Positives = 135/190 (71%), Gaps = 5/190 (2%)

Query: 14  SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRST-QP 72
           S+T G++IRC+AA++   GKPLVMEE++V PP+  EVR+KIL TSLCH+DV FW +  Q 
Sbjct: 2   STTVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQN 61

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-V 131
           P  VFPRILGHEA G+VESVG GV E+  GD VLPVF G+C +C  CKS +SN+CS   +
Sbjct: 62  P--VFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRI 119

Query: 132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
           N D   M  DG +RF  + G+ I++ +  S+F+EYTVV V  V KI P  PLD  C+LSC
Sbjct: 120 NTDRGVMINDGQSRF-SINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSC 178

Query: 192 GVSTGNYRTL 201
           G+STG   TL
Sbjct: 179 GISTGLGATL 188

Solanum tuberosum (taxid: 4113)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P14674|ADH2_SOLTU Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1

 Score =  202 bits (514), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/190 (55%), Positives = 135/190 (71%), Gaps = 5/190 (2%)

Query: 14  SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRST-QP 72
           S+T G++IRC+AA++   GKPLVMEE++V PP+  EVR+KIL TSLCH+DV FW +  Q 
Sbjct: 2   STTTGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQN 61

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-V 131
           P  VFPRILGHEA G+VESVG GV E+  GD VLPVF G+C +C  CKS +SN+CS   +
Sbjct: 62  P--VFPRILGHEAAGIVESVGEGVTELAPGDHVLPVFTGECKDCAHCKSEESNMCSLLRI 119

Query: 132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
           N D   M  DG +RF  + G+ I++ +  S+F+EYTVV V  V KI P  PLD  C+LSC
Sbjct: 120 NTDRGVMINDGQSRF-SINGKPIYHFVGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSC 178

Query: 192 GVSTGNYRTL 201
           G+STG   TL
Sbjct: 179 GISTGLGATL 188

Solanum tuberosum (taxid: 4113)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
357465103	391	Alcohol dehydrogenase-like protein [Medi	0.860	0.457	0.738	1e-70
359492460	408	PREDICTED: alcohol dehydrogenase-like 1	0.908	0.463	0.671	1e-69
302141994	387	unnamed protein product [Vitis vinifera]	0.908	0.488	0.671	2e-69
297845266	388	hypothetical protein ARALYDRAFT_472484 [	0.908	0.487	0.642	3e-65
359492331	395	PREDICTED: alcohol dehydrogenase-like 7-	0.875	0.460	0.666	6e-64
449453073	676	PREDICTED: alcohol dehydrogenase-like 7-	0.923	0.284	0.612	4e-62
15219884	386	alcohol dehydrogenase-like 2 [Arabidopsi	0.889	0.479	0.634	9e-62
225459818	384	PREDICTED: alcohol dehydrogenase-like 7	0.879	0.476	0.646	3e-61
356554319	387	PREDICTED: alcohol dehydrogenase-like 7-	0.903	0.485	0.629	4e-61
15238330	390	alcohol dehydrogenase-like 7 [Arabidopsi	0.903	0.482	0.642	5e-60

>gi|357465103|ref|XP_003602833.1| Alcohol dehydrogenase-like protein [Medicago truncatula] gi|355491881|gb|AES73084.1| Alcohol dehydrogenase-like protein [Medicago truncatula]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 133/180 (73%), Positives = 155/180 (86%), Gaps = 1/180 (0%)

Query: 18  GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR-STQPPMAV 76
           GK IRC+AAI +  G+PLV+EE+E+DPPK+ EVRIKILCTSLCHSDVTFW+ ++  P A 
Sbjct: 13  GKPIRCKAAICKKSGEPLVIEEVELDPPKSWEVRIKILCTSLCHSDVTFWKMNSSAPTAR 72

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
           FPRILGHEAVG+VESVG  VEEV+EGDLV+PVF  +CGEC DC S KSN C+KF NK  +
Sbjct: 73  FPRILGHEAVGLVESVGENVEEVKEGDLVVPVFLPNCGECIDCGSTKSNNCTKFGNKPIR 132

Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
            MPRDGT+RFRD+KGEV+H++L VSSF+EYTVVDVTHVVKIT DIPLD ACLLSCGVSTG
Sbjct: 133 DMPRDGTSRFRDMKGEVVHHLLGVSSFSEYTVVDVTHVVKITHDIPLDKACLLSCGVSTG 192

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492460|ref|XP_002285748.2| PREDICTED: alcohol dehydrogenase-like 1 [Vitis vinifera]

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 127/189 (67%), Positives = 153/189 (80%)

Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
           M+ KN+S TAGK I C+AAI + PG+ LV+EEIEV PP+A E+RIKILCTSLCH+DVTFW
Sbjct: 22  MEKKNSSETAGKAITCKAAICKEPGEALVIEEIEVAPPEAWEIRIKILCTSLCHTDVTFW 81

Query: 68  RSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC 127
           +    P   FP+ILGHEAVGVVESVG  VEEV+EGDLV+PVF   C ECRDC S KSN+C
Sbjct: 82  KMNDGPERSFPKILGHEAVGVVESVGEHVEEVKEGDLVVPVFLPSCKECRDCTSTKSNLC 141

Query: 128 SKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIAC 187
           +KF +K  Q MPRDG++RFR++KGEV+H+ L VSSF EYTVVD+ HVV++  +IP D AC
Sbjct: 142 TKFGSKFYQGMPRDGSSRFRNMKGEVVHHFLFVSSFVEYTVVDIAHVVRLNHEIPADKAC 201

Query: 188 LLSCGVSTG 196
           LLSCGVSTG
Sbjct: 202 LLSCGVSTG 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141994|emb|CBI19197.3| unnamed protein product [Vitis vinifera]

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/189 (67%), Positives = 153/189 (80%)

Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
           M+ KN+S TAGK I C+AAI + PG+ LV+EEIEV PP+A E+RIKILCTSLCH+DVTFW
Sbjct: 1   MEKKNSSETAGKAITCKAAICKEPGEALVIEEIEVAPPEAWEIRIKILCTSLCHTDVTFW 60

Query: 68  RSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC 127
           +    P   FP+ILGHEAVGVVESVG  VEEV+EGDLV+PVF   C ECRDC S KSN+C
Sbjct: 61  KMNDGPERSFPKILGHEAVGVVESVGEHVEEVKEGDLVVPVFLPSCKECRDCTSTKSNLC 120

Query: 128 SKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIAC 187
           +KF +K  Q MPRDG++RFR++KGEV+H+ L VSSF EYTVVD+ HVV++  +IP D AC
Sbjct: 121 TKFGSKFYQGMPRDGSSRFRNMKGEVVHHFLFVSSFVEYTVVDIAHVVRLNHEIPADKAC 180

Query: 188 LLSCGVSTG 196
           LLSCGVSTG
Sbjct: 181 LLSCGVSTG 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845266|ref|XP_002890514.1| hypothetical protein ARALYDRAFT_472484 [Arabidopsis lyrata subsp. lyrata] gi|297336356|gb|EFH66773.1| hypothetical protein ARALYDRAFT_472484 [Arabidopsis lyrata subsp. lyrata]

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/190 (64%), Positives = 152/190 (80%), Gaps = 1/190 (0%)

Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
           MD  + SST GK IRC+AAI R  G+ LV+EEI+VDPP+A EVRIKILCTSLCH+DVTFW
Sbjct: 1   MDKASLSSTEGKPIRCKAAILRKAGEALVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFW 60

Query: 68  RSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC 127
           +    P+A FPRILGHEAVGVVES+G  V+  ++GD+VLPVFQ  C EC++CKSPKSN C
Sbjct: 61  KLESGPLARFPRILGHEAVGVVESIGANVDGFKQGDVVLPVFQPQCEECKECKSPKSNWC 120

Query: 128 SKFVNKDNQSMPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186
           +++ N    +  R G T+RF+D  GEVIH+ + VSSFTEYTVVD+ H+VKI+P+IP+DIA
Sbjct: 121 TRYTNDFLSNTRRYGMTSRFKDSFGEVIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIA 180

Query: 187 CLLSCGVSTG 196
            LLSCGV+TG
Sbjct: 181 ALLSCGVATG 190

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492331|ref|XP_002285917.2| PREDICTED: alcohol dehydrogenase-like 7-like [Vitis vinifera] gi|302141684|emb|CBI18887.3| unnamed protein product [Vitis vinifera]

 Score =  249 bits (635), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 122/183 (66%), Positives = 147/183 (80%), Gaps = 1/183 (0%)

Query: 14  SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP 73
           S T GK IRCRAA+SR  G+PLVMEE+ V PP AGEVRI+I+CTSLCHSD+TFW+  +PP
Sbjct: 15  SQTRGKPIRCRAAVSRKAGEPLVMEEVMVAPPMAGEVRIRIICTSLCHSDLTFWKLKEPP 74

Query: 74  MAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNK 133
            A FPRILGHEAVGVVESVG  V EV EGD VLP+F  DCGEC DC+S KSN+CSKF  +
Sbjct: 75  -ACFPRILGHEAVGVVESVGENVTEVAEGDTVLPIFIPDCGECMDCRSEKSNLCSKFPFE 133

Query: 134 DNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGV 193
            +  +PR  ++RF DLKGEV+++ LNVSSF+EYTVVD+ ++ KI+P IP + ACL SCGV
Sbjct: 134 ISPWLPRHKSSRFTDLKGEVLYHFLNVSSFSEYTVVDIDNITKISPAIPPNKACLFSCGV 193

Query: 194 STG 196
           STG
Sbjct: 194 STG 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453073|ref|XP_004144283.1| PREDICTED: alcohol dehydrogenase-like 7-like [Cucumis sativus]

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 120/196 (61%), Positives = 149/196 (76%), Gaps = 4/196 (2%)

Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
           M+N ++ +T  + IRCRAA+ R PG+PLV+EEI V PP   EVRI+I+CTSLCHSD+TFW
Sbjct: 1   MENNSSPATGLQPIRCRAAVCRKPGEPLVIEEIIVAPPMPREVRIRIICTSLCHSDLTFW 60

Query: 68  RSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC 127
           +   PP  +FPRILGHEA+GVVESVG  V EV+EGD V+P F  DCGEC+DC S KSN+C
Sbjct: 61  KLKDPP-GIFPRILGHEAIGVVESVGKDVHEVKEGDTVIPTFMADCGECKDCLSNKSNLC 119

Query: 128 SKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIAC 187
           +KF    +   PR GT+RF DL GEVIH++L VSSFTEYTVVD+ +V K+ P IP + AC
Sbjct: 120 TKFPFSVSPGTPRYGTSRFTDLNGEVIHHLLFVSSFTEYTVVDIVNVTKVDPAIPPNRAC 179

Query: 188 LLSCGVSTG---NYRT 200
           LLSCGV+TG    +RT
Sbjct: 180 LLSCGVTTGVGATWRT 195

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219884|ref|NP_173660.1| alcohol dehydrogenase-like 2 [Arabidopsis thaliana] gi|75337342|sp|Q9SK87.1|ADHL2_ARATH RecName: Full=Alcohol dehydrogenase-like 2 gi|6587844|gb|AAF18533.1|AC006551_19 Very similar to alcohol dehydrogenase [Arabidopsis thaliana] gi|50253432|gb|AAT71918.1| At1g22440 [Arabidopsis thaliana] gi|51972064|gb|AAU15136.1| At1g22440 [Arabidopsis thaliana] gi|332192121|gb|AEE30242.1| alcohol dehydrogenase-like 2 [Arabidopsis thaliana]

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 118/186 (63%), Positives = 147/186 (79%), Gaps = 1/186 (0%)

Query: 12  NASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ 71
            AS T GK IRC+AAI R  G+PLV+EEI+VDPP+A EVRIKILCTSLCH+DVTFW+   
Sbjct: 3   KASITEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDS 62

Query: 72  PPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFV 131
            P+A FPRILGHEAVGVVES+G  V+  ++GD+VLPVF   C EC++C SPKSN C+K+ 
Sbjct: 63  GPLARFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYT 122

Query: 132 NKDNQSMPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           N    +  R G T+RF+D +GE IH+ + VSSFTEYTVVD+ H+VKI+P+IP+DIA LLS
Sbjct: 123 NDYLSNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLS 182

Query: 191 CGVSTG 196
           C V+TG
Sbjct: 183 CSVATG 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459818|ref|XP_002285916.1| PREDICTED: alcohol dehydrogenase-like 7 [Vitis vinifera] gi|302141683|emb|CBI18886.3| unnamed protein product [Vitis vinifera]

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 119/184 (64%), Positives = 143/184 (77%), Gaps = 1/184 (0%)

Query: 13  ASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP 72
           A  T GK IRCRAA+    G+PLVMEE+ V PP AGEVRI+I+CTSLC+SD+TFW+   P
Sbjct: 3   AGETRGKPIRCRAAVCWKAGEPLVMEEVMVAPPLAGEVRIRIICTSLCYSDITFWKLKDP 62

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
           P   FPRILGHEAVGVVESVG  V EV EGD+VLP+F  DCGEC DC+S KSN+CSKF  
Sbjct: 63  P-GCFPRILGHEAVGVVESVGENVSEVTEGDIVLPIFLPDCGECTDCRSEKSNLCSKFPF 121

Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
           K +  MPR  ++RF DLKGEV+++ L VSSF+EYTVVD+ ++ KI P+IP + ACL SCG
Sbjct: 122 KVSPWMPRYESSRFTDLKGEVLYHFLFVSSFSEYTVVDIANITKIDPNIPPNRACLFSCG 181

Query: 193 VSTG 196
           VSTG
Sbjct: 182 VSTG 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554319|ref|XP_003545495.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 1 [Glycine max]

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/189 (62%), Positives = 147/189 (77%), Gaps = 1/189 (0%)

Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
           M++K A+++ G+ IRC+AAI R PG PL +EEI V PP   E RI+++CTSLCHSDVTFW
Sbjct: 1   MEDKLATTSEGQPIRCKAAICRKPGSPLSIEEIIVAPPMPREARIRVICTSLCHSDVTFW 60

Query: 68  RSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC 127
           +   PP A+ PRILGHEAVGVVESVG  V EV +GD+V+P+F  DCGEC DCKS KSN+C
Sbjct: 61  KMEVPP-AICPRILGHEAVGVVESVGEDVTEVTKGDVVVPIFLPDCGECIDCKSSKSNLC 119

Query: 128 SKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIAC 187
           SKF  + +  MPR  T+RF DLKG++IH+ L VSSF+EYTVVD+ H+ KI P IP + AC
Sbjct: 120 SKFPFEVSPWMPRHATSRFTDLKGDIIHHFLFVSSFSEYTVVDIAHLTKIDPAIPPNRAC 179

Query: 188 LLSCGVSTG 196
           LLSCGVSTG
Sbjct: 180 LLSCGVSTG 188

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238330|ref|NP_199040.1| alcohol dehydrogenase-like 7 [Arabidopsis thaliana] gi|75333830|sp|Q9FH04.1|ADHL7_ARATH RecName: Full=Alcohol dehydrogenase-like 7 gi|10177010|dbj|BAB10198.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|19698971|gb|AAL91221.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|22136298|gb|AAM91227.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|332007405|gb|AED94788.1| alcohol dehydrogenase-like 7 [Arabidopsis thaliana]

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 148/193 (76%), Gaps = 5/193 (2%)

Query: 8   MDNKNASS---TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDV 64
           M+N N+SS   ++ K IRC+AA+SR  G+PLVMEEI V PP+  EVRI+I+CT+LCHSDV
Sbjct: 1   MENGNSSSDNKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDV 60

Query: 65  TFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKS 124
           TFW+   PP A FPRILGHEA+GVVESVG  V+EV EGD VLP F  DCG+C DCKS KS
Sbjct: 61  TFWKLQVPP-ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKS 119

Query: 125 NICSKFVNKDNQSMPR-DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPL 183
           N+CSKF  K +  MPR D ++RF DL GE + + LNVSSF+EYTV+DV +VVKI   IP 
Sbjct: 120 NLCSKFPFKVSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPP 179

Query: 184 DIACLLSCGVSTG 196
             ACLLSCGVSTG
Sbjct: 180 SRACLLSCGVSTG 192

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
TAIR|locus:2009512	386	AT1G22440 [Arabidopsis thalian	0.884	0.476	0.567	1.7e-50
TAIR|locus:2157627	390	AT5G42250 [Arabidopsis thalian	0.903	0.482	0.559	4.1e-49
TAIR|locus:2120663	389	AT4G22110 [Arabidopsis thalian	0.860	0.460	0.561	5.4e-47
TAIR|locus:2009522	388	AT1G22430 [Arabidopsis thalian	0.908	0.487	0.526	1.1e-46
TAIR|locus:2025237	379	ADH1 "alcohol dehydrogenase 1"	0.884	0.485	0.481	7.5e-41
ZFIN|ZDB-GENE-040426-1165	380	zgc:63568 "zgc:63568" [Danio r	0.879	0.481	0.421	3.5e-36
ZFIN|ZDB-GENE-040426-1910	378	zgc:77938 "zgc:77938" [Danio r	0.865	0.476	0.431	3.5e-36
MGI|MGI:87929	374	Adh5 "alcohol dehydrogenase 5	0.850	0.473	0.447	5.1e-35
TAIR|locus:2035619	394	AT1G32780 [Arabidopsis thalian	0.879	0.464	0.427	1.3e-34
RGD|2292706	374	Adh5 "alcohol dehydrogenase 5	0.850	0.473	0.441	2.8e-34

TAIR|locus:2009512 AT1G22440 [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 105/185 (56%), Positives = 130/185 (70%)

Query:    13 ASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP 72
             AS T GK IRC+AAI R  G+PLV+EEI+VDPP+A EVRIKILCTSLCH+DVTFW+    
Sbjct:     4 ASITEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSG 63

Query:    73 PMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
             P+A FPRIL                     D+VLPVF   C EC++C SPKSN C+K+ N
Sbjct:    64 PLARFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYTN 123

Query:   133 KDNQSMPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
                 +  R G T+RF+D +GE IH+ + VSSFTEYTVVD+ H+VKI+P+IP+DIA LLSC
Sbjct:   124 DYLSNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSC 183

Query:   192 GVSTG 196
              V+TG
Sbjct:   184 SVATG 188

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2157627 AT5G42250 [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 108/193 (55%), Positives = 130/193 (67%)

Query:     8 MDNKNASS---TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDV 64
             M+N N+SS   ++ K IRC+AA+SR  G+PLVMEEI V PP+  EVRI+I+CT+LCHSDV
Sbjct:     1 MENGNSSSDNKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDV 60

Query:    65 TFWRSTQPPMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKS 124
             TFW+   PP A FPRIL                     D VLP F  DCG+C DCKS KS
Sbjct:    61 TFWKLQVPP-ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKS 119

Query:   125 NICSKFVNKDNQSMPR-DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPL 183
             N+CSKF  K +  MPR D ++RF DL GE + + LNVSSF+EYTV+DV +VVKI   IP 
Sbjct:   120 NLCSKFPFKVSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPP 179

Query:   184 DIACLLSCGVSTG 196
               ACLLSCGVSTG
Sbjct:   180 SRACLLSCGVSTG 192

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2120663 AT4G22110 [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 101/180 (56%), Positives = 125/180 (69%)

Query:    18 GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVF 77
             GK IRC+AA+SR PG+ LV+EEI VDPP+A EVRIKI+CTSLCH+DV+F +    P+A F
Sbjct:    12 GKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSGPLARF 71

Query:    78 PRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS 137
             PRIL                     D+VLPVF   C ECRDCKS KSN C++F +    +
Sbjct:    72 PRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLSN 131

Query:   138 MPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
               R G T+RF+D  GE I++ L VSSF+EYTVVD+ H+VKI+PDIP+D A LLSCGVSTG
Sbjct:   132 TRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTG 191

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2009522 AT1G22430 [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 100/190 (52%), Positives = 126/190 (66%)

Query:     8 MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
             MD    SS  GK I C+AAI R  G+ LV+E+I VDPP+A EVRIKILCTSLCH+D+TFW
Sbjct:     1 MDKTFFSSNEGKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFW 60

Query:    68 RSTQPPMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNIC 127
             + +  P++ FPRIL                     D+VLPVF   C EC+DCKS K+N C
Sbjct:    61 KLSFGPISRFPRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWC 120

Query:   128 SKFVNKDNQSMPRDG-TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186
              ++      +  R G  +RF+D  GEVIH+ L VSSF+EYTVVD+ H+VKI+P+IP+D A
Sbjct:   121 DRYAEDFISNTRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKA 180

Query:   187 CLLSCGVSTG 196
              LLSCGVSTG
Sbjct:   181 ALLSCGVSTG 190

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2025237 ADH1 "alcohol dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 91/189 (48%), Positives = 117/189 (61%)

Query:    15 STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRST-QPP 73
             ST G+IIRC+AA++   GKPLV+EE+EV PP+  EVRIKIL TSLCH+DV FW +  Q P
Sbjct:     2 STTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQTP 61

Query:    74 MAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKF-VN 132
             +  FPRI                      D VLP+F G+CGECR C S +SN+C    +N
Sbjct:    62 L--FPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRIN 119

Query:   133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
              +   M  DG +RF  + G+ I++ L  S+F+EYTVV    V KI PD PLD  C++SCG
Sbjct:   120 TERGGMIHDGESRF-SINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCG 178

Query:   193 VSTGNYRTL 201
             +STG   TL
Sbjct:   179 LSTGLGATL 187

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045333 "cellular respiration" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0001666 "response to hypoxia" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS;IMP

ZFIN|ZDB-GENE-040426-1165 zgc:63568 "zgc:63568" [Danio rerio (taxid:7955)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 78/185 (42%), Positives = 108/185 (58%)

Query:    13 ASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTF-WRSTQ 71
             A  T GK+I+C+ A++  PGKPL +E++EV PPKA EVRIKI  + +CHSD  + +   +
Sbjct:     3 AMETEGKVIKCKVAVAWEPGKPLSIEKVEVAPPKAHEVRIKIAASGVCHSDWAYLYDIAK 62

Query:    72 PPMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFV 131
                  FP +L                     D V+P+F   CG+C  C+SPK+N+C+K  
Sbjct:    63 MKPRPFPLVLGHEGAGVVESVGPGVTKVSIGDKVIPLFLPQCGQCERCQSPKTNLCTKNW 122

Query:   132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
              K  Q +  DGT+R    K + +H  + +S+F+EYTVV   +V KI PD PLD  CLL C
Sbjct:   123 EKTQQGVLADGTSRIT-CKNQQVHQFIGISTFSEYTVVPEDNVTKIHPDAPLDRVCLLGC 181

Query:   192 GVSTG 196
             GVSTG
Sbjct:   182 GVSTG 186

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1910 zgc:77938 "zgc:77938" [Danio rerio (taxid:7955)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 79/183 (43%), Positives = 107/183 (58%)

Query:    16 TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM- 74
             T GK+I+C+AA++  PGKPL +E++EV PPKA EVRIK++ + +CH+D TF       M 
Sbjct:     3 TEGKVIKCKAAVAWEPGKPLSIEDVEVAPPKAHEVRIKMVASGICHTDWTFLHEVGKTMN 62

Query:    75 -AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNK 133
                FP +L                     D V+P+    CG+C  C SPK+N+CSK   K
Sbjct:    63 PQPFPVVLGHEGAGVVESVGPGVTKMAKGDKVIPLVVPQCGQCERCLSPKTNLCSKNWEK 122

Query:   134 DNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGV 193
               Q +  DGT+R    K + +H  + +S+F+EYTVV   +V KI PD PLD  CLL CGV
Sbjct:   123 TQQCLLADGTSRIT-CKNQQVHQFIAISTFSEYTVVPEDNVTKIHPDAPLDRVCLLGCGV 181

Query:   194 STG 196
             STG
Sbjct:   182 STG 184

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:87929 Adh5 "alcohol dehydrogenase 5 (class III), chi polypeptide" [Mus musculus (taxid:10090)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 81/181 (44%), Positives = 107/181 (59%)

Query:    17 AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
             A ++IRC+AA++   GKPL +EEIEV PPKA EVRIKIL T++CH+D  +  S   P   
Sbjct:     2 ANQVIRCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKILATAVCHTDA-YTLSGADPEGC 60

Query:    77 FPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKF-VNKDN 135
             FP IL                     D V+P++   CGEC+ C +PK+N+C K  V +  
Sbjct:    61 FPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 120

Query:   136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
               MP DGT+RF   KG+ + + +  S+F+EYTVV    V KI P  PLD  CLL CG+ST
Sbjct:   121 GLMP-DGTSRFT-CKGKSVFHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGIST 178

Query:   196 G 196
             G
Sbjct:   179 G 179

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IMP

GO:0003016 "respiratory system process" evidence=IMP

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISO;IDA

GO:0005504 "fatty acid binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0006068 "ethanol catabolic process" evidence=ISO

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IMP

GO:0018467 "formaldehyde dehydrogenase activity" evidence=ISO

GO:0032496 "response to lipopolysaccharide" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045777 "positive regulation of blood pressure" evidence=IMP

GO:0046294 "formaldehyde catabolic process" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051409 "response to nitrosative stress" evidence=IMP

GO:0051775 "response to redox state" evidence=ISO

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=ISO;IMP;IDA

TAIR|locus:2035619 AT1G32780 [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 82/192 (42%), Positives = 111/192 (57%)

Query:    14 SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP 73
             + T GK+I C+AA+   P  PLV++EI VDPP+  EVR+KIL +S+CH+D+  W  T   
Sbjct:     2 AETQGKVITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKILYSSICHTDLGCWNGTNEA 61

Query:    74 MAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKF-VN 132
                FPRIL                     D V+P F G+CGEC+ CK  +SN+C ++ V+
Sbjct:    62 ERAFPRILGHEAVGIVESVGEGVKDVKEGDYVIPTFNGECGECKVCKREESNLCERYHVD 121

Query:   133 KDNQSMPRDGTNRF-----RD---LKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLD 184
                + M  DG  RF     +D    + + I++ LN S+FTEYTV+D   VVKI P+ PL 
Sbjct:   122 PMKRVMVNDGGTRFSTTINKDGGSSQSQPIYHFLNTSTFTEYTVLDSACVVKIDPNSPLK 181

Query:   185 IACLLSCGVSTG 196
                LLSCGVSTG
Sbjct:   182 QMSLLSCGVSTG 193

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

RGD|2292706 Adh5 "alcohol dehydrogenase 5 (class III), chi polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 80/181 (44%), Positives = 107/181 (59%)

Query:    17 AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
             A ++IRC+AA++   GKPL +EEIEV PP+A EVRIKI+ T++CH+D  +  S   P   
Sbjct:     2 ANQVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDA-YTLSGADPEGC 60

Query:    77 FPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKF-VNKDN 135
             FP IL                     D V+P++   CGEC+ C +PK+N+C K  V +  
Sbjct:    61 FPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 120

Query:   136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
               MP DGT+RF   KG+ I + +  S+F+EYTVV    V KI P  PLD  CLL CG+ST
Sbjct:   121 GLMP-DGTSRFT-CKGKPILHFMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGIST 178

Query:   196 G 196
             G
Sbjct:   179 G 179

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=IEA;ISO

GO:0003016 "respiratory system process" evidence=IEA;ISO

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=IEA;ISO;IDA

GO:0005504 "fatty acid binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006068 "ethanol catabolic process" evidence=IDA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0007568 "aging" evidence=IEP

GO:0008270 "zinc ion binding" evidence=IEA;ISO

GO:0018119 "peptidyl-cysteine S-nitrosylation" evidence=IEA;ISO

GO:0018467 "formaldehyde dehydrogenase activity" evidence=IEA;ISO

GO:0032496 "response to lipopolysaccharide" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0045777 "positive regulation of blood pressure" evidence=IEA;ISO

GO:0046294 "formaldehyde catabolic process" evidence=IEA;ISO

GO:0051409 "response to nitrosative stress" evidence=IEA;ISO

GO:0051775 "response to redox state" evidence=IEA;ISO

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	208
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	3e-96
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	4e-77
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	1e-76
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	6e-71
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	3e-69
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	9e-62
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	4e-61
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	5e-58
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	5e-57
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	6e-53
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	6e-50
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	6e-44
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	5e-42
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	2e-33
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	2e-31
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	8e-30
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	1e-28
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	2e-28
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	3e-28
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	3e-27
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	7e-27
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	1e-26
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	2e-25
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	1e-23
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	3e-23
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	2e-22
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	3e-22
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	7e-22
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	3e-21
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	4e-21
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	6e-21
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	1e-20
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	9e-20
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	2e-19
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	3e-19
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	4e-19
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	6e-19
cd05281	341	cd05281, TDH, Threonine dehydrogenase	2e-18
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	3e-18
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	2e-17
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	2e-17
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	3e-17
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	3e-17
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	2e-16
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	9e-16
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	1e-15
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	2e-15
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	4e-15
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	4e-15
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	1e-14
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	5e-14
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	1e-13
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	2e-13
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	4e-13
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	6e-13
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	1e-12
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	1e-12
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	1e-12
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	2e-12
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	2e-12
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	2e-11
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	4e-11
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	4e-11
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	7e-11
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	2e-10
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	2e-10
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	3e-10
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	5e-10
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	1e-09
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	1e-09
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	1e-09
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	2e-09
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	2e-09
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	3e-09
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	5e-09
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	5e-09
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	6e-08
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	6e-08
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	8e-08
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	1e-07
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	2e-07
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	2e-07
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	2e-07
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	3e-07
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	6e-07
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	8e-07
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	9e-07
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	2e-06
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	1e-05
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	1e-04
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	1e-04
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	1e-04
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	2e-04
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	3e-04
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	3e-04
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	4e-04
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	5e-04
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	5e-04
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	6e-04
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	6e-04
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	0.001
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	0.001

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  284 bits (728), Expect = 3e-96
 Identities = 102/177 (57%), Positives = 126/177 (71%), Gaps = 3/177 (1%)

Query: 21  IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           I C+AA++   GKPLV+EE+EV PP+A EVRIKIL TSLCH+DV FW +      +FPRI
Sbjct: 1   ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQT-PLFPRI 59

Query: 81  LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-VNKDNQSMP 139
           LGHEA G+VESVG GV +++ GD VLPVF G+C ECR CKS KSN+C    +N D   M 
Sbjct: 60  LGHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMI 119

Query: 140 RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
            DG +RF    G+ I++ +  S+F+EYTVV V  V KI P+ PLD  CLLSCGVSTG
Sbjct: 120 NDGKSRFSI-NGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTG 175

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  235 bits (601), Expect = 4e-77
 Identities = 92/176 (52%), Positives = 124/176 (70%), Gaps = 4/176 (2%)

Query: 21  IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           I+C+AA++   GKPLV+EEIEV PPKA EVRIK+L TS+CH+D+      +    +FP I
Sbjct: 1   IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKAT--LFPVI 58

Query: 81  LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR 140
           LGHE  G+VESVG GV  ++ GD V+P+F G CGEC +C+S K+N+C K+   ++  MP 
Sbjct: 59  LGHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMP- 117

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
           DGT+RF   KG+ I++ L  S+F++YTVVD  +V KI P  PL+  CLL CG STG
Sbjct: 118 DGTSRF-TCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTG 172

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score =  234 bits (599), Expect = 1e-76
 Identities = 101/186 (54%), Positives = 131/186 (70%), Gaps = 2/186 (1%)

Query: 13  ASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP 72
           AS T GK+I C+AA++  PG+PLVMEEI VDPP+  EVRIKIL TS+CH+D++ W+    
Sbjct: 1   ASETQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENE 60

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-V 131
               +PRILGHEA G+VESVG GVE+++ GD V+P+F G+CG+CR CK  K+N+C  + V
Sbjct: 61  AQRAYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRV 120

Query: 132 NKDNQSMPRDGTNRFRDLK-GEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           +     M  DG  RF     G+ I++ LN S+FTEYTV+D   VVKI P+ PL    LLS
Sbjct: 121 DPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLS 180

Query: 191 CGVSTG 196
           CGVSTG
Sbjct: 181 CGVSTG 186

Length = 381

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score =  219 bits (561), Expect = 6e-71
 Identities = 93/181 (51%), Positives = 117/181 (64%), Gaps = 3/181 (1%)

Query: 16  TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           TAGK+I+C+AA+   P KP  +EEIEV PPKA EVRIKI+ T +C SD            
Sbjct: 1   TAGKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV--T 58

Query: 76  VFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN 135
            FP ILGHEA G+VESVG GV  V+ GD V+P+F   CG+CR C +P+SN+C K      
Sbjct: 59  PFPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKP 118

Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
           Q + +DGT+RF   KG+ IH+ L  S+F+EYTVVD   V KI    PL+  CL+ CG ST
Sbjct: 119 QGLMQDGTSRF-TCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFST 177

Query: 196 G 196
           G
Sbjct: 178 G 178

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  215 bits (549), Expect = 3e-69
 Identities = 91/176 (51%), Positives = 120/176 (68%), Gaps = 2/176 (1%)

Query: 21  IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           I C+AA++   GKPL +EE+EV PPKAGEVRIKIL T +CH+D  +  S   P  +FP I
Sbjct: 1   ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDA-YTLSGADPEGLFPVI 59

Query: 81  LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR 140
           LGHE  G+VESVG GV  V+ GD V+P++  +CGEC+ CKS K+N+C K      + +  
Sbjct: 60  LGHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMP 119

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
           DGT+RF   KG+ I++ +  S+F+EYTVV    V KI P+ PLD  CLL CGV+TG
Sbjct: 120 DGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTG 174

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  196 bits (499), Expect = 9e-62
 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 3/174 (1%)

Query: 23  CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILG 82
           C+AA+    GKPL +EEIEV PPKAGEVRIK++ T +CH+D+       P     P ILG
Sbjct: 1   CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP--TPLPVILG 58

Query: 83  HEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           HE  G+VES+G GV  ++ GD V+P+F   CG+C+ C +P+ N+CSK    + + +  DG
Sbjct: 59  HEGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDG 118

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
           T+RF   KG+ IH+ L  S+F EYTVV    + KI PD PL+  CL+ CG STG
Sbjct: 119 TSRFT-CKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTG 171

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score =  194 bits (495), Expect = 4e-61
 Identities = 90/184 (48%), Positives = 118/184 (64%), Gaps = 5/184 (2%)

Query: 13  ASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP 72
           +S +   +I CRAA++   G+ LVMEE+EV PP+  E+RIK++ TSLC SD++ W S   
Sbjct: 3   SSISQPNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQ-- 60

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
             A+FPRI GHEA G+VES+G GV E  +GD VL VF G+CG CR C S KSN+C     
Sbjct: 61  --ALFPRIFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGL 118

Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
           +    M  D   RF  +KG+ +++   VSSF+EYTVV     VK+ P  PL   CLLSCG
Sbjct: 119 ERKGVMHSDQKTRF-SIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCG 177

Query: 193 VSTG 196
           V+ G
Sbjct: 178 VAAG 181

Length = 378

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  186 bits (474), Expect = 5e-58
 Identities = 79/176 (44%), Positives = 110/176 (62%), Gaps = 3/176 (1%)

Query: 21  IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           ++ RAA++R  GKPL +EE+++DPP+AGEV ++I  T +CH+D     S   P   FP +
Sbjct: 1   MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHT-LSGDDPEG-FPAV 58

Query: 81  LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR 140
           LGHE  G+VE+VG GV  V+ GD V+ +F  +CG+C+ C S K N+C        +    
Sbjct: 59  LGHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMP 118

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
           DGT R     G  +++ L  S+F EYTVV    +VKI PD PL+ ACLL CGV+TG
Sbjct: 119 DGTTRLSG-NGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTG 173

Length = 366

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  183 bits (468), Expect = 5e-57
 Identities = 73/173 (42%), Positives = 92/173 (53%), Gaps = 4/173 (2%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           RAA+    GKPL +EE+E+D P  GEV ++I    LCHSD+       P     P +LGH
Sbjct: 2   RAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPAP--LPAVLGH 59

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           E  GVVE VG GV  V+ GD V+  +   CG CR C   + N+C          +P    
Sbjct: 60  EGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLP--DG 117

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
            R     GE +  +  + +F EYTVV    VVKI  DIPLD A LL CGV+TG
Sbjct: 118 TRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTG 170

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  173 bits (440), Expect = 6e-53
 Identities = 77/175 (44%), Positives = 113/175 (64%), Gaps = 2/175 (1%)

Query: 22  RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           + RAA++   G+PL +EE++V+ P+ GEV ++I+ T +CH+D  F  S   P  VFP IL
Sbjct: 1   KSRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDA-FTLSGADPEGVFPVIL 59

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           GHE  G+VE+VG GV  V+ GD V+P++  +CGEC+ C S K+N+C        + +  D
Sbjct: 60  GHEGAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPD 119

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
           GT+RF    G+ I++ +  S+F+EYTVV    + KI P  PL+  CLL CGV+TG
Sbjct: 120 GTSRF-SKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTG 173

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score =  165 bits (420), Expect = 6e-50
 Identities = 77/173 (44%), Positives = 100/173 (57%), Gaps = 2/173 (1%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AA+   PG+P  +EEIE+D PKAGEV +K++ + LCHSD     +   PM  +P + GH
Sbjct: 3   KAAVLWGPGQPWEVEEIELDDPKAGEVLVKLVASGLCHSDEHL-VTGDLPMPRYPILGGH 61

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           E  GVV  VG GV  V+ GD V+  F   CG CR C +   N+C         S   DGT
Sbjct: 62  EGAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQISDGT 121

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
            RF    G+ +  +  + +F+EYTVV    VVKI  DIPLD ACL+ CGV TG
Sbjct: 122 YRFH-ADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTG 173

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  149 bits (380), Expect = 6e-44
 Identities = 68/178 (38%), Positives = 97/178 (54%), Gaps = 6/178 (3%)

Query: 21  IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           ++  AA+ R PG P V+E++E+D P+  EV ++I+ T +CH+D+   R    P    P +
Sbjct: 1   MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVV-RDGGLP-TPLPAV 58

Query: 81  LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR 140
           LGHE  GVVE+VG  V  ++ GD V+  F   CGEC +C S     C  F    N S  R
Sbjct: 59  LGHEGAGVVEAVGSAVTGLKPGDHVVLSF-ASCGECANCLSGHPAYCENF-FPLNFSGRR 116

Query: 141 -DGTNRFRDLKGEVIH-NVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
            DG+       G  +H +    SSF  Y VV   +VVK+  D+PL++   L CG+ TG
Sbjct: 117 PDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTG 174

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  145 bits (367), Expect = 5e-42
 Identities = 79/184 (42%), Positives = 97/184 (52%), Gaps = 17/184 (9%)

Query: 24  RAAISRIPG--------KPLVMEEIEVDPPKAGEVRIKILCTSLCHSD---VTFWRSTQP 72
           RAA+ R  G        +PLV+EE+E+DPP  GEV +KI    LCHSD   +   R    
Sbjct: 2   RAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPRPL 61

Query: 73  PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
           PMA     LGHEA GVV  VG GV ++  GD V+ VF   CG CR C   +  +C     
Sbjct: 62  PMA-----LGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAA 116

Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            +       G  R R   GE+ H+ L VS+F EY VV    VVKI  D+PL+IA L  C 
Sbjct: 117 ANGAGTLLSGGRRLRLRGGEINHH-LGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCA 175

Query: 193 VSTG 196
           V TG
Sbjct: 176 VLTG 179

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  121 bits (306), Expect = 2e-33
 Identities = 60/179 (33%), Positives = 80/179 (44%), Gaps = 25/179 (13%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AA+ +  G+PL +EE+ V  P  GEV IK+    +CH+D+   +   P     P I GH
Sbjct: 5   KAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPK-LPLIPGH 63

Query: 84  EAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           E VG V  VG GV  ++ GD V +      CGEC  C+S   N+C    N+       DG
Sbjct: 64  EIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLC---PNQKITGYTTDG 120

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTL 201
                               + EY VV   +VVKI   + L  A  L C   T  YR L
Sbjct: 121 -------------------GYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITT-YRAL 159

Length = 339

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  117 bits (294), Expect = 2e-31
 Identities = 58/178 (32%), Positives = 81/178 (45%), Gaps = 11/178 (6%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPR--IL 81
           +AA+ + P  PL +EEI V  PK GE+ I++    +CHSD+   +   P    FP   +L
Sbjct: 2   KAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELP----FPPPFVL 57

Query: 82  GHEAVGVVESVGGGVE---EVREGDLVLPVFQGDCGECRDCKSPKSNICSKF-VNKDNQS 137
           GHE  G V  VG  VE    +  GD V+  F   CG+CR C   K N+C  F      + 
Sbjct: 58  GHEISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKG 117

Query: 138 MPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
              DGT R   L G  ++         EY VV  T +  +   +    + +L C   T
Sbjct: 118 TLYDGTTRLFRLDGGPVYMYSM-GGLAEYAVVPATALAPLPESLDYTESAVLGCAGFT 174

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  112 bits (282), Expect = 8e-30
 Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 24/175 (13%)

Query: 23  CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
            +AA+    G KP  ++++ V  P  GEV +K+  + +CH+D+       P     P I 
Sbjct: 1   MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIG 60

Query: 82  GHEAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR 140
           GHE  GVV +VG GV  ++ GD V +      CG+C  C++    +C    N+ N     
Sbjct: 61  GHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLC---PNQKNSGYTV 117

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
           DGT                   F EY + D  +V  I   +  + A  L C   T
Sbjct: 118 DGT-------------------FAEYAIADARYVTPIPDGLSFEQAAPLLCAGVT 153

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  109 bits (274), Expect = 1e-28
 Identities = 58/182 (31%), Positives = 77/182 (42%), Gaps = 27/182 (14%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AA+    G PL  EE+ V  P  GEV IKI    +CH+D+            +P + GH
Sbjct: 1   KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGS-KYPLVPGH 59

Query: 84  EAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           E VG V  VG GVE  + GD V +    G CG C  C+    N+C K VN    +    G
Sbjct: 60  EIVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTT---QG 116

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPL-DIACLLSCGVSTGNYRTL 201
                               + EY V D  + V +   +PL   A LL  G++   Y  L
Sbjct: 117 -------------------GYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITV--YSAL 155

Query: 202 VD 203
            D
Sbjct: 156 RD 157

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  108 bits (271), Expect = 2e-28
 Identities = 59/173 (34%), Positives = 81/173 (46%), Gaps = 23/173 (13%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AAI   P KPL +EE+    P  GEV IK+    +C+ D+ FW+   P    +P ILGH
Sbjct: 2   KAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRG-KYPLILGH 60

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           E VG VE VG GVE  + GD V+  +   CG+C  C S + N+C    N+       DG 
Sbjct: 61  EIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLC---RNRAEYGEEVDGG 117

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
                              F EY  V    +VK+  ++  + A L +C V T 
Sbjct: 118 -------------------FAEYVKVPERSLVKLPDNVSDESAALAACVVGTA 151

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score =  101 bits (255), Expect = 3e-28
 Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 23/131 (17%)

Query: 47  AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVL 106
            GEV +++    +C SD+  +R   PP+   P ILGHE  G+VE VG GV  ++ GD V+
Sbjct: 1   PGEVLVRVKAAGICGSDLHIYRGEPPPVK-LPLILGHEGAGIVEEVGPGVTGLKVGDRVV 59

Query: 107 PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEY 166
                 CG+C  C+  + N+C    N     +  DG                    F EY
Sbjct: 60  VYPLIPCGKCAACREGRENLCP---NGKFLGVHLDGG-------------------FAEY 97

Query: 167 TVVDVTHVVKI 177
            VV   ++V +
Sbjct: 98  VVVPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  104 bits (261), Expect = 3e-27
 Identities = 44/154 (28%), Positives = 60/154 (38%), Gaps = 27/154 (17%)

Query: 49  EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPV 108
           EV +++    LC +D+   R   PP    P ILGHE  GVV  VG GV  V+ GD V+ +
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60

Query: 109 FQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV 168
               CG C  C+                    DG                    F EY V
Sbjct: 61  PNLGCGTCELCRELCPGGGI-------LGEGLDGG-------------------FAEYVV 94

Query: 169 VDVTHVVKITPDIPLDIACLLSCGVSTGNYRTLV 202
           V   ++V +   + L+ A LL   ++T  Y  L 
Sbjct: 95  VPADNLVPLPDGLSLEEAALLPEPLATA-YHALR 127

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  104 bits (261), Expect = 7e-27
 Identities = 52/179 (29%), Positives = 74/179 (41%), Gaps = 42/179 (23%)

Query: 19  KIIRCRAAISRIPGKPLVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
           K + C         KP  +E +++  P   AGEV +++    +C SD+  +    P  A 
Sbjct: 2   KALVCE--------KPGRLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNP-FAS 52

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLV--LPVFQGDCGECRDCKSPKSNICSKFVNKD 134
           +PRILGHE  G V  VG GV  ++ GD V   P     CGEC  C+  + N C       
Sbjct: 53  YPRILGHELSGEVVEVGEGVAGLKVGDRVVVDPYI--SCGECYACRKGRPNCCEN----- 105

Query: 135 NQSM--PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
            Q +   RDG                    F EY VV    ++ +   + LD A L+  
Sbjct: 106 LQVLGVHRDGG-------------------FAEYIVVPADALL-VPEGLSLDQAALVEP 144

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score =  104 bits (260), Expect = 1e-26
 Identities = 60/173 (34%), Positives = 82/173 (47%), Gaps = 11/173 (6%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           R  I+R  G P+ +E I V  P  GEV + I    +CH+D+ +          FP +LGH
Sbjct: 3   RGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGINDE--FPFLLGH 60

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           EA GVVE+VG GV +V  GD V+  ++  CG+CR CK  +   C    N   +    DGT
Sbjct: 61  EAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGT 120

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
                     +   L + +F E T+V      K+ P      A LL CGV  G
Sbjct: 121 E---------LSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAG 164

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  100 bits (252), Expect = 2e-25
 Identities = 53/182 (29%), Positives = 75/182 (41%), Gaps = 26/182 (14%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           RAA+    G+PL + E+    P    V +++    +C SD   W+    P    P + GH
Sbjct: 2   RAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQG-HDPDVTLPHVPGH 60

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           E  GVV  VG  V   R GD V   F   CG C  C++  SN+C      ++Q  P    
Sbjct: 61  EFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVC------EHQVQP---- 110

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVD--VTHVVKITPDIPLDIACLLSCGVSTGNYRTL 201
                  G          SF EY  V     ++V++  D+    A  L C  +T  +R L
Sbjct: 111 -------GFTHP-----GSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATA-FRAL 157

Query: 202 VD 203
           V 
Sbjct: 158 VH 159

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 95.9 bits (239), Expect = 1e-23
 Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 23/172 (13%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +A I     +   +EE+    P   EV IK+    LC+ D+   +   P M  +P ILGH
Sbjct: 2   KAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMK-YPVILGH 60

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           E VG VE VG  V+  + GD V  +     G C  C+S +   C                
Sbjct: 61  EVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYC---------------- 104

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
            + R   GE +        F EY  V VT +VK+ P++  + A ++ C    
Sbjct: 105 -KNRLGYGEELDGF-----FAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGM 150

Length = 334

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 94.6 bits (236), Expect = 3e-23
 Identities = 55/179 (30%), Positives = 79/179 (44%), Gaps = 31/179 (17%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +A     PG PL + E +V  P  GEV IK+    +CHSD  F +    P   +PR+ GH
Sbjct: 2   KAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDA-FVKEGAMPGLSYPRVPGH 60

Query: 84  EAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP--- 139
           E VG +++VG GV   + GD V +    G CG C  C+         FV+ +N  +    
Sbjct: 61  EVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRR------GDFVHCENGKVTGVT 114

Query: 140 RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI-PLDIACLLSCGVSTGN 197
           RDG                    + EY +     + +I  D+   + A LL  GV+T N
Sbjct: 115 RDG-------------------GYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFN 154

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 92.7 bits (231), Expect = 2e-22
 Identities = 50/164 (30%), Positives = 67/164 (40%), Gaps = 22/164 (13%)

Query: 32  GKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVES 91
              LV+EE+ V  P  GEV +K+    +CHSD+       P +   P  LGHE  G V  
Sbjct: 11  KGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVE 70

Query: 92  VGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKG 151
           VG GV   + GD V       CG C  C+  + N+C       NQ MP  G +       
Sbjct: 71  VGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLC------LNQGMPGLGIDGG----- 119

Query: 152 EVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
                      F EY VV    +V +   +P   A + +  V T
Sbjct: 120 -----------FAEYIVVPARALVPVPDGVPFAQAAVATDAVLT 152

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 91.8 bits (229), Expect = 3e-22
 Identities = 47/163 (28%), Positives = 64/163 (39%), Gaps = 17/163 (10%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVE 90
               L     E  P    +V IKI    +CHSD+      +     +P + GHE VG+V 
Sbjct: 8   ASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDL-HTLRNEWGPTKYPLVPGHEIVGIVV 66

Query: 91  SVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDL 149
           +VG  V + + GD V +      CG C  CKS +   C K V   N   P DGT      
Sbjct: 67  AVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYP-DGT------ 119

Query: 150 KGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
                   +    + ++ VVD   V KI   +    A  L C 
Sbjct: 120 --------ITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCA 154

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 90.7 bits (226), Expect = 7e-22
 Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 29/170 (17%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVF--PRIL 81
           +AA     GKPL +E++ V  P  G+V +++    +CHSD+         +  +  P  L
Sbjct: 2   KAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTL 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLVL--PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP 139
           GHE  G VE VG GV+ ++EGD V+  P   G CG CR C+  + N C      +N   P
Sbjct: 62  GHENAGWVEEVGSGVDGLKEGDPVVVHPP-WG-CGTCRYCRRGEENYC------ENARFP 113

Query: 140 RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI-PLDIACL 188
             GT+                  F EY +V    +VK+   + P++ A L
Sbjct: 114 GIGTD----------------GGFAEYLLVPSRRLVKLPRGLDPVEAAPL 147

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 89.2 bits (222), Expect = 3e-21
 Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 29/183 (15%)

Query: 23  CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILG 82
            RAA+   PGKPL + E+ +   + G V +++    +C SDV      +P +   P ILG
Sbjct: 1   ARAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVP-LPIILG 59

Query: 83  HEAVGVVESVGGGV------EEVREGDLVL-PVFQGDCGECRDCKSPKSNIC--SKFVNK 133
           HE VG V ++GGGV      E ++ GD V   V    CG C  C       C   K    
Sbjct: 60  HEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAP-CGRCYRCLVGDPTKCENRKKY-- 116

Query: 134 DNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV-THVVKITPDIPLDIACLLSCG 192
                   G     D              + E+  +   T +V++  ++P ++A   +C 
Sbjct: 117 --------GHEASCDDPH-------LSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCA 161

Query: 193 VST 195
           ++T
Sbjct: 162 LAT 164

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 88.8 bits (221), Expect = 4e-21
 Identities = 49/177 (27%), Positives = 72/177 (40%), Gaps = 34/177 (19%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW-----------RSTQPPMAVFPR 79
           PGKPL   EI+   P   EV +K+    +CHSD+  W            S        P 
Sbjct: 9   PGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPL 68

Query: 80  ILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP 139
           +LGHE VG V +VG    +V+ GD VL      CGEC  C +   N+C+K        + 
Sbjct: 69  VLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAK---GRALGIF 125

Query: 140 RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC-GVST 195
           +DG                    + EY +V  +  +     +   +A  L+C G++ 
Sbjct: 126 QDG-------------------GYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTA 163

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 88.4 bits (220), Expect = 6e-21
 Identities = 60/186 (32%), Positives = 78/186 (41%), Gaps = 35/186 (18%)

Query: 24  RAAISRIPGK----PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPR 79
           +A +   PG     PL + E+ V  P  GEV IK+    +C +D+       PP    P 
Sbjct: 2   KAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP-PKLPL 60

Query: 80  ILGHEAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNIC--SKFVNKDNQ 136
           I GHE VG VE+VG GV     GD V +P     CGECR C+S + N+C  ++F      
Sbjct: 61  IPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYT-- 118

Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD-IPLDIACLLSCGVST 195
               DG                    + EY V D      I  D    + A LL  G+  
Sbjct: 119 ---VDG-------------------GYAEYMVADERFAYPIPEDYDDEEAAPLLCAGI-I 155

Query: 196 GNYRTL 201
           G YR L
Sbjct: 156 G-YRAL 160

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 87.4 bits (217), Expect = 1e-20
 Identities = 48/180 (26%), Positives = 70/180 (38%), Gaps = 22/180 (12%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AA+  + G  + +EE     P  G+V I++  T +C SD+  +R  +P +     ILGH
Sbjct: 2   KAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGH 61

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           E VG V  V G V   + GD V+      CG CR C++ + N+C                
Sbjct: 62  EFVGEVVEV-GVVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCEN-------------- 106

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD-IPLDIACL---LSCGVSTGNYR 199
                  G           F EY  V     +   PD I  + A L   L+        R
Sbjct: 107 ---PGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAER 163

Length = 350

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 84.9 bits (211), Expect = 9e-20
 Identities = 53/181 (29%), Positives = 73/181 (40%), Gaps = 44/181 (24%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +A +   PG+ L +EE+ V  P   EV IK+    +C +D+  +       A  P + GH
Sbjct: 2   KALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEG--EFGAAPPLVPGH 58

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGD----CGECRDCKSPKSNICSKF----VNKDN 135
           E  GVV +VG  V   + GD V      D    CGEC  C+  + N+C       V    
Sbjct: 59  EFAGVVVAVGSKVTGFKVGDRVA----VDPNIYCGECFYCRRGRPNLCENLTAVGVT--- 111

Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCG 192
               R+G                    F EY VV    V KI  ++  + A L   LSC 
Sbjct: 112 ----RNG-------------------GFAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCA 148

Query: 193 V 193
           V
Sbjct: 149 V 149

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 84.1 bits (209), Expect = 2e-19
 Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 48/170 (28%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW------RSTQPPMAVFPRILGHE 84
               L + ++ V  P   +V IK+  T++C +DV  +      + T P     P ++GHE
Sbjct: 9   AEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPV----PMVVGHE 64

Query: 85  AVGVVESVGGGVEEVREGDLVLPVFQGD----CGECRDCKSPKSNICSKF----VNKDNQ 136
            VG V  VG  V   + GD V     G+    CG CR+C++ + ++C       VN    
Sbjct: 65  FVGEVVEVGSEVTGFKVGDRV----SGEGHIVCGHCRNCRAGRRHLCRNTKGVGVN---- 116

Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186
              R G                   +F EY V+   +V KI  DIP D+A
Sbjct: 117 ---RPG-------------------AFAEYLVIPAFNVWKIPDDIPDDLA 144

Length = 341

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 83.8 bits (208), Expect = 3e-19
 Identities = 48/160 (30%), Positives = 70/160 (43%), Gaps = 34/160 (21%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG 94
           L  E+I    P  GEV +K+    +C SD+  +  T       P +LGHE  G VE VG 
Sbjct: 12  LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA--YHPPLVLGHEFSGTVEEVGS 69

Query: 95  GVEEVREGDLV-----LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDL 149
           GV+++  GD V     LP     CG+C  CK  + ++CS   N D     RDG       
Sbjct: 70  GVDDLAVGDRVAVNPLLP-----CGKCEYCKKGEYSLCS---NYDYIGSRRDG------- 114

Query: 150 KGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLL 189
                       +F EY  V   +++KI   +  + A ++
Sbjct: 115 ------------AFAEYVSVPARNLIKIPDHVDYEEAAMI 142

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 83.3 bits (206), Expect = 4e-19
 Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 27/150 (18%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG 94
           L +EE  +  P AGEVR+K+    +C SD   +R    P A +PR++GHE  GV+++VG 
Sbjct: 12  LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRG-HNPFAKYPRVIGHEFFGVIDAVGE 70

Query: 95  GVEEVREGDLVL--PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGE 152
           GV+  R G+ V   PV    CG C  C   K N+C+  V      + RDG          
Sbjct: 71  GVDAARIGERVAVDPVIS--CGHCYPCSIGKPNVCTSLV---VLGVHRDG---------- 115

Query: 153 VIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182
                     F+EY VV   +  +I   I 
Sbjct: 116 ---------GFSEYAVVPAKNAHRIPDAIA 136

Length = 339

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 82.8 bits (205), Expect = 6e-19
 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 21/162 (12%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG 94
           + + E  V  P  GEV +++  + LC SD+ ++       A    I GHE  GVV +VG 
Sbjct: 12  VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGP 71

Query: 95  GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVI 154
           GV   R GD V+      CG CR+C+     +C+    +      RDG            
Sbjct: 72  GVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSK--RAAYGWNRDG------------ 117

Query: 155 HNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
                     EY +V    ++ +  D+      LL CG+ T 
Sbjct: 118 -------GHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTA 152

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 81.1 bits (201), Expect = 2e-18
 Identities = 50/165 (30%), Positives = 69/165 (41%), Gaps = 38/165 (23%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ-------PPMAVFPRILGH 83
            G    + E+ V  P  GEV IK+L  S+C +DV  +   +       PP+     I GH
Sbjct: 9   AGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPL-----IFGH 63

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC--SKFVNKDNQSMPRD 141
           E  G V  VG GV  V+ GD V       CG+C  C++   ++C  +K +  D      D
Sbjct: 64  EFAGEVVEVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVD-----TD 118

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186
           G                    F EY VV   ++ K   DIP +IA
Sbjct: 119 GC-------------------FAEYVVVPEENLWKNDKDIPPEIA 144

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 80.4 bits (199), Expect = 3e-18
 Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 29/163 (17%)

Query: 37  MEEIEVDPPKAG--EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG 94
           +E  EV  P+ G  EV IK+    +C SD+  ++    P+   P +LGHE  G +  VG 
Sbjct: 14  VELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVE-TPVVLGHEFSGTIVEVGP 72

Query: 95  GVEEVREGDLVLPVFQGD-CGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEV 153
            VE  + GD V+       CG C  C+    N+C        Q    DG           
Sbjct: 73  DVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQ---ADG----------- 118

Query: 154 IHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGV 193
                    F EY +V    + ++  ++ L+ A L   L+  V
Sbjct: 119 --------GFAEYVLVPEESLHELPENLSLEAAALTEPLAVAV 153

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 78.8 bits (195), Expect = 2e-17
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 26/166 (15%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A + R  G P  L   ++    P   EV +++   +L H D+   R         P IL
Sbjct: 2   KAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHIL 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGD-CGECRDCKSPKSNICSKFVNKDNQSMPR 140
           G +  GVVE+VG GV  V+ G  V+ ++ G  CG C  C + + N+C+++          
Sbjct: 62  GSDGAGVVEAVGPGVTNVKPGQRVV-IYPGISCGRCEYCLAGRENLCAQY---GILGEHV 117

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186
           DG                    + EY  V   +++ I  ++  + A
Sbjct: 118 DGG-------------------YAEYVAVPARNLLPIPDNLSFEEA 144

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 78.4 bits (194), Expect = 2e-17
 Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 26/168 (15%)

Query: 26  AISRIPGKP-LVMEEIEVDPPKAGEVRIKILCTSLCHSD---VTFWRSTQPPMAVFPRIL 81
           AI+  PGKP + + +I    P  GEV ++ L   +C +D   V     T PP   F  +L
Sbjct: 3   AIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDF-LVL 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           GHEA+GVVE VG G   +  GDLV+P  +   G+C +C+                     
Sbjct: 62  GHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRI------------GRPDFCET 108

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLL 189
           G    R +KG  +H  +      EY V D  ++VK+ P +  D+  LL
Sbjct: 109 GEYTERGIKG--LHGFM-----REYFVDDPEYLVKVPPSL-ADVGVLL 148

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 78.4 bits (194), Expect = 3e-17
 Identities = 51/163 (31%), Positives = 65/163 (39%), Gaps = 35/163 (21%)

Query: 38  EEIEVDPPKAGEVRIKILCTSLCHSDV-------TFWRSTQPPM---AVFPRILGHEAVG 87
           EE+   P K GEV+IK+    +C SD+        F  +   P       P  LGHE  G
Sbjct: 15  EEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSG 74

Query: 88  VVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFR 147
           VV  VG GV   + GD V+      CG C  CK    N+C         S+   G     
Sbjct: 75  VVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLC--------DSLGFIG----- 121

Query: 148 DLKGEVIHNVLNVSS--FTEYTVVDVTHVVKITPDIPLDIACL 188
                     L      F EY VV   HV K+  ++PL+ A L
Sbjct: 122 ----------LGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAAL 154

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 77.8 bits (192), Expect = 3e-17
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A +    G P  L + E+    P  GEV +++    +   DV   +   PP+   P I 
Sbjct: 2   KAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIP 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLVL 106
           G EA GVV +VG GV   + GD V 
Sbjct: 62  GSEAAGVVVAVGSGVTGFKVGDRVA 86

Length = 326

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 76.0 bits (187), Expect = 2e-16
 Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 33/170 (19%)

Query: 26  AISRI-PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW------RSTQPPMAVFP 78
           A+ +  PG    + E+ V  P  GEV IK+L TS+C +DV  +      +S   P    P
Sbjct: 1   ALMKTKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKP----P 56

Query: 79  RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM 138
           +++GHE  G V  +G GVE ++ GD V       CG+C  C+  + ++C    N     +
Sbjct: 57  QVVGHEVAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQ---NTKIFGV 113

Query: 139 PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL 188
             DG                    F EY VV   ++ K    IP + A +
Sbjct: 114 DTDGC-------------------FAEYAVVPAQNIWKNPKSIPPEYATI 144

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 74.2 bits (183), Expect = 9e-16
 Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 29/161 (18%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR--STQPPMAVFPRILGHEAVGVVESV 92
           L +EE     P  GEVR+++    +C SD+ +++           P +LGHE  GVVE+V
Sbjct: 9   LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAV 68

Query: 93  GGGVEEVREGDLV-----LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFR 147
           G GV  +  G  V      P     CG C  C++ + N+C         +M      RF 
Sbjct: 69  GPGVTGLAPGQRVAVNPSRP-----CGTCDYCRAGRPNLCL--------NM------RF- 108

Query: 148 DLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL 188
              G  +        F EY VVD +  V +   + L  A L
Sbjct: 109 --LGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL 147

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 74.1 bits (183), Expect = 1e-15
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 12/102 (11%)

Query: 33  KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ--PPMAVFPRILGHEAVGVVE 90
             L +EE  +  P  GEV +++    +C SDV +++  +    +   P +LGHE+ G V 
Sbjct: 8   GDLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVV 67

Query: 91  SVGGGVEEVREGDLV-----LPVFQGDCGECRDCKSPKSNIC 127
           +VG GV  ++ GD V     +P     C  C  CKS + N+C
Sbjct: 68  AVGSGVTHLKVGDRVAIEPGVP-----CRTCEFCKSGRYNLC 104

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AA+   P   + +EE+ V  P  GEV +K+    +C +DV   R     +   PRILGH
Sbjct: 2   KAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLK-PPRILGH 59

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQG-DCGECRDCKSPKSNICSKF 130
           E  G +  VG GV   + GD V  V     CGEC  C     N+C  +
Sbjct: 60  EIAGEIVEVGDGVTGFKVGDRVF-VAPHVPCGECHYCLRGNENMCPNY 106

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 72.3 bits (178), Expect = 4e-15
 Identities = 46/163 (28%), Positives = 64/163 (39%), Gaps = 27/163 (16%)

Query: 40  IEVDPPK---AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV 96
            EV  PK     +  +++  TS+C SD+  +R    P A    ILGHE VG V  VG  V
Sbjct: 15  EEVPDPKIQGPHDAIVRVTATSICGSDLHIYRG-GVPGAKHGMILGHEFVGEVVEVGSDV 73

Query: 97  EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHN 156
           + ++ GD V       CG CR C+      C   +         DG              
Sbjct: 74  KRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGG------------- 120

Query: 157 VLNVSSFTEYTVV---DVTHVVKITPDIPLDIACLLSCGVSTG 196
                   EY  V   D  ++ KI   +P + A +LS  + TG
Sbjct: 121 ------QAEYVRVPYAD-MNLAKIPDGLPDEDALMLSDILPTG 156

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 72.2 bits (178), Expect = 4e-15
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 5/100 (5%)

Query: 32  GKPLVMEEIEVDPPK---AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
           G P  +   +V  PK     +  ++I  T++C SD+  +R           +LGHEA+G 
Sbjct: 7   GGPGNVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGAEP--GLVLGHEAMGE 64

Query: 89  VESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICS 128
           VE VG  VE ++ GD V+  F   CG CR+CK   + +C 
Sbjct: 65  VEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCL 104

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 70.3 bits (173), Expect = 1e-14
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKA--GEVRIKILCTSLCHSDVTFWRSTQPPMAV---FP 78
           +A      G P V+E  +V  P+   GEV +K+    +   D+   R      A     P
Sbjct: 2   KAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLK-IREGLLKAAFPLTLP 60

Query: 79  RILGHEAVGVVESVGGGVEEVREGDLVL 106
            I GH+  GVV +VG GV   + GD V 
Sbjct: 61  LIPGHDVAGVVVAVGPGVTGFKVGDEVF 88

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 69.2 bits (169), Expect = 5e-14
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVE 90
           PGKP+V   +E+    AG+V +K+    +CH+D++++          P  LGHE  G V 
Sbjct: 7   PGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVI 66

Query: 91  SVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP 139
             G G        +++P     CGEC  CK+ +  IC        Q MP
Sbjct: 67  QAGAGAASWIGKAVIVPAVI-PCGECELCKTGRGTICR------AQKMP 108

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 6/99 (6%)

Query: 24  RAAISRIPGKPLVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           RA +   PG   V EE+  DP   +  +  I+++ T +C SD+  +R   P     P  +
Sbjct: 2   RATVIHGPGDIRV-EEVP-DPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT--RAPAPI 57

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCK 120
           GHE VGVVE VG  V  V+ GD V+  F    G C  C+
Sbjct: 58  GHEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCR 96

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 35/90 (38%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           RA      G P  L +EE+ V  P AGEV I++    L  +D  F R         P  L
Sbjct: 2   RAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARL 61

Query: 82  GHEAVGVVESVGGGVEEVREGD--LVLPVF 109
           G+EA GVVE+VG GV     GD   V+P  
Sbjct: 62  GYEAAGVVEAVGAGVTGFAVGDRVSVIPAA 91

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 66.4 bits (163), Expect = 4e-13
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 37  MEEIEVDPPK---AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVG 93
           +   EV  PK     +  +++  T++C SD+  +    P M     ILGHE +GVVE VG
Sbjct: 12  VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKK-GDILGHEFMGVVEEVG 70

Query: 94  GGVEEVREGDLVLPVFQGDCGECRDCKS 121
             V  ++ GD V+  F   CGEC  CK 
Sbjct: 71  PEVRNLKVGDRVVVPFTIACGECFYCKR 98

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 66.4 bits (162), Expect = 6e-13
 Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 30/168 (17%)

Query: 17  AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ----- 71
            GK+    + + R P   L +E++ V   K  E+ I++    +C SD+  + + +     
Sbjct: 23  EGKLTNLGSKVWRYP--ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYIL 80

Query: 72  -PPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF 130
            P +  FP ++GHE  GVVE  G  V+   +GD V       CG CR C+S   N C   
Sbjct: 81  YPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHC--- 137

Query: 131 VNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178
            N        DG                   +F EY  V+  +  +I 
Sbjct: 138 KNLKELGFSADG-------------------AFAEYIAVNARYAWEIN 166

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 44  PPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGD 103
                +  +K+   ++C SD+  +R   P    F  +LGHE VG V  VG  V  ++ GD
Sbjct: 22  IQDPTDAIVKVTAAAICGSDLHIYRGHIPSTPGF--VLGHEFVGEVVEVGPEVRTLKVGD 79

Query: 104 LVLPVFQGDCGECRDCKSPKSNICSK 129
            V+  F   CGEC  C+  +S  C+K
Sbjct: 80  RVVSPFTIACGECFYCRRGQSGRCAK 105

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 31  PGKPLVMEEIEVD--PPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
              PLV+E + +   PP  GEV +++L   +  SD+             P + G+E VGV
Sbjct: 8   EPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGV 67

Query: 89  VESVGGGVEEVREGDLVLPVF 109
           V  VG GV  +  G  VLP+ 
Sbjct: 68  VVEVGSGVSGLLVGQRVLPLG 88

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 20/149 (13%)

Query: 49  EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLV-LP 107
           +V IK++   +CH+D+   ++    M+ +P + GHE VG V  VG  V +   GD+V + 
Sbjct: 36  DVVIKVIYCGICHTDLHQIKNDLG-MSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVG 94

Query: 108 VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYT 167
           V  G CGEC  CKS     C+K +   N  +  DG    +  +G           F    
Sbjct: 95  VIVGCCGECSPCKSDLEQYCNKRIWSYN-DVYTDG----KPTQG----------GFASAM 139

Query: 168 VVDVTHVVKITPD--IPLDIACLLSCGVS 194
           VVD   VVKI P+   P   A LL  GV+
Sbjct: 140 VVDQKFVVKI-PEGMAPEQAAPLLCAGVT 167

Length = 357

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 17/144 (11%)

Query: 49  EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLV-LP 107
           +V +KIL   +CHSD+   ++ +     +P + GHE VG+V  +G  V++ +EGD V + 
Sbjct: 39  DVTVKILYCGVCHSDLHTIKN-EWGFTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVG 97

Query: 108 VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYT 167
           V  G C  C  C     N C K +   N S+  DGT               N   +++  
Sbjct: 98  VIVGSCKSCESCDQDLENYCPKMIFTYN-SIGHDGTK--------------NYGGYSDMI 142

Query: 168 VVDVTHVVKITPDIPLDIACLLSC 191
           VVD   V++   ++PLD    L C
Sbjct: 143 VVDQHFVLRFPDNLPLDAGAPLLC 166

Length = 360

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 24  RAAISRIPGKPL-VMEEIEVDP--PKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           RAA+    G P  V+E  EV    P AGEV ++   + + + D+   R T       P I
Sbjct: 2   RAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAI 61

Query: 81  LGHEAVGVVESVGGGVEEVREGDLV 105
            G EAVGVV++VG GV+ ++ G  V
Sbjct: 62  GGSEAVGVVDAVGEGVKGLQVGQRV 86

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 52  IKILCTSLCHSDVTFWRSTQPPMAVFP-RILGHEAVGVVESVGGGVEEVREGDLVLPVFQ 110
           +K+L T++C +D+   +   P   V P RILGHE VGVVE VG  V   + GD VL    
Sbjct: 30  VKMLKTTICGTDLHILKGDVP--TVTPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCI 87

Query: 111 GDCGECRDCK 120
             CG C  C+
Sbjct: 88  SSCGTCGYCR 97

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 60.7 bits (148), Expect = 4e-11
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A +   PG P  L + EI +  PK G V I++    L  S++ F R    P   FPR+L
Sbjct: 2   KAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEI-FTRQGHSPSVKFPRVL 60

Query: 82  GHEAVGVVESVGGGVEEVREGDLV 105
           G EAVG VE   GG      G  V
Sbjct: 61  GIEAVGEVEEAPGG--TFTPGQRV 82

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 60.5 bits (148), Expect = 4e-11
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 31  PGKPLVM--EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
            G P V+  E++ V  P  GEV ++     +   D  F RS   P+   P +LG E  GV
Sbjct: 8   TGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYF-RSGLYPLP-LPFVLGVEGAGV 65

Query: 89  VESVGGGVEEVREGDLV 105
           VE+VG GV   + GD V
Sbjct: 66  VEAVGPGVTGFKVGDRV 82

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 59.7 bits (145), Expect = 7e-11
 Identities = 30/154 (19%), Positives = 48/154 (31%), Gaps = 53/154 (34%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVF--PRILGHEAVGV 88
           PG+   +EE     P  G+V +++    +C SD+  +   +P       P   GHE  G 
Sbjct: 4   PGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGR 62

Query: 89  VESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRD 148
           V ++G GV  +  GD V                                           
Sbjct: 63  VVALGPGVRGLAVGDRVA------------------------------------------ 80

Query: 149 LKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182
                    L+  +F EY + D  H V +   + 
Sbjct: 81  --------GLSGGAFAEYDLADADHAVPLPSLLD 106

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 45/174 (25%), Positives = 66/174 (37%), Gaps = 46/174 (26%)

Query: 24  RAAI-SRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRS-TQPPMAVFPRIL 81
           +AA+ +   G  LV+ ++ V  P   EV +K+   +L   D   W+      +  +P IL
Sbjct: 2   KAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVD---WKHQDYGFIPSYPAIL 58

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           G +  G V  VG GV   + GD V        G               FV+  N + PR+
Sbjct: 59  GCDFAGTVVEVGSGVTRFKVGDRV-------AG---------------FVHGGNPNDPRN 96

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
           G                   +F EY V D     KI  +I  + A  L  G+ T
Sbjct: 97  G-------------------AFQEYVVADADLTAKIPDNISFEEAATLPVGLVT 131

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 58.9 bits (142), Expect = 2e-10
 Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 17/145 (11%)

Query: 49  EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLV-LP 107
           +V +KIL   +CHSD+   ++     + +P I GHE VG+   VG  V + +EGD V + 
Sbjct: 33  DVTVKILFCGVCHSDLHTIKN-HWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVG 91

Query: 108 VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYT 167
           V  G C  C  C     N C K V   N S   DGT               N   +++  
Sbjct: 92  VIIGSCQSCESCNQDLENYCPKVVFTYN-SRSSDGTR--------------NQGGYSDVI 136

Query: 168 VVDVTHVVKITPDIPLDIACLLSCG 192
           VVD   V+ I   +P D    L C 
Sbjct: 137 VVDHRFVLSIPDGLPSDSGAPLLCA 161

Length = 375

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 24  RAAISRIPGKPLVMEEIEVD--PPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A +    G P V E  EV    P  G+V +++  + +   D    R         P IL
Sbjct: 2   KALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAIL 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLV 105
           G +  GVVE+VG GV   R GD V
Sbjct: 62  GCDVAGVVEAVGEGVTRFRVGDEV 85

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 32  GKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVES 91
           G  L +E++    P  GE  +++L   +C++D+  ++   P    FP + GHE VG+VE 
Sbjct: 9   GLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP----FPGVPGHEFVGIVEE 64

Query: 92  VGGG--VEEVREGDLVLPVFQGDCGECRDCKS 121
                 V +   G++ +      CG C  C+ 
Sbjct: 65  GPEAELVGKRVVGEINIA-----CGRCEYCRR 91

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR---STQPPMAVFP 78
           +A + +  G P  LV+EE+  +P   GEVRI++    +   D+   +     +PP+   P
Sbjct: 2   KAVVCKELGGPEDLVLEEVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPL---P 58

Query: 79  RILGHEAVGVVESVGGGVEEVREGDLVL 106
            + G E  GVVE+VG GV   + GD V+
Sbjct: 59  FVPGSEVAGVVEAVGEGVTGFKVGDRVV 86

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 40/117 (34%), Positives = 53/117 (45%), Gaps = 15/117 (12%)

Query: 37  MEEIEVDPPKAGEVRIKILCTSLCHSDV-------TFWRST-QPPMAVFPRILGHEAVGV 88
           +EE+ V  P  GE+ +K+    +C  D+       +FW    QPP    P I GHE VG 
Sbjct: 14  LEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGR 73

Query: 89  VESVGGGVEE--VREGDLVLPVFQGDCGECRDCKSPKSNICSK-----FVNKDNQSM 138
           V  +G G EE  V+ GD V+      C  CR C   +  +C K     F N  N  M
Sbjct: 74  VVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGM 130

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 42/180 (23%), Positives = 61/180 (33%), Gaps = 42/180 (23%)

Query: 33  KPLVMEEI------EVDPPKAG--EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHE 84
           K   M  I      E   P  G  +  ++    + C SDV       P       ILGHE
Sbjct: 2   KAFAMLGIGKVGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERH-GMILGHE 60

Query: 85  AVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICS------KFVNKDNQSM 138
           AVGVVE VG  V++ + GD V+             +    +         KF      S 
Sbjct: 61  AVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKF------SN 114

Query: 139 PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITPDIPLDIACLLSCGVSTG 196
            +DG                    F EY  V+    ++  +   +  + A +L   +STG
Sbjct: 115 FKDGV-------------------FAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTG 155

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 15/116 (12%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDV-----TFWRSTQPPMAVFP 78
           +AA+        V+ E  + P K GE  +K+    +CH+D+      F   T        
Sbjct: 2   KAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGDKTG------- 54

Query: 79  RILGHEAVGVVESVGGGVEEVREGDLVLPV--FQGDCGECRDCKSPKSNICSKFVN 132
           RILGHE +G+V+ VG GV  ++ GD V     F+G CG C  C + +  +C    N
Sbjct: 55  RILGHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEG-CGHCEYCTTGRETLCRSVKN 109

Length = 338

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 50  VRIKILCTSLCHSD--VTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLP 107
           V +K++ T++C SD  +   R+T P   V    LGHE  G V   G  VE ++ GD+V  
Sbjct: 36  VILKVVTTNICGSDQHMVRGRTTAPTGLV----LGHEITGEVIEKGRDVEFIKIGDIVSV 91

Query: 108 VFQGDCGECRDCKSPKSNIC 127
            F   CG CR+CK   + +C
Sbjct: 92  PFNIACGRCRNCKEGHTGVC 111

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 24/136 (17%)

Query: 49  EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPV 108
           +V +K+  + LC SD+   R  +     +P  LGHE  G VE+VG GV+++  GD V  V
Sbjct: 27  DVLVKVASSGLCGSDIP--RIFKNGAHYYPITLGHEFSGYVEAVGSGVDDLHPGDAVACV 84

Query: 109 FQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV 168
               C  C +C     ++C+K+   D     RDG N                    EY V
Sbjct: 85  PLLPCFTCPECLRGFYSLCAKY---DFIGSRRDGGN-------------------AEYIV 122

Query: 169 VDVTHVVKITPDIPLD 184
           V   ++  +  D+P++
Sbjct: 123 VKRKNLFALPTDMPIE 138

Length = 347

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 54.8 bits (133), Expect = 5e-09
 Identities = 25/75 (33%), Positives = 35/75 (46%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG 94
           L + E  V  P  GEV +++   SL + D+       PP    P I   +  G V +VG 
Sbjct: 15  LKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGE 74

Query: 95  GVEEVREGDLVLPVF 109
           GV   + GD V+P F
Sbjct: 75  GVTRFKVGDRVVPTF 89

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 54.5 bits (132), Expect = 5e-09
 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 31  PGKPLVMEEIEVD----PPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA--VFPRILGHE 84
            G P V+  +EV+     PK GEV +K+   S+   D    R     +    FP I G +
Sbjct: 6   YGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMD 65

Query: 85  AVGVVESVGGGVEEVREGDLVL 106
             G V +VG GV   + GD V 
Sbjct: 66  FAGEVVAVGSGVTRFKVGDEVF 87

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 51.5 bits (124), Expect = 6e-08
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 31  PGKP---LVMEEIEVDPPKA-GEVRIKILCTSLCHSDVTFWRST---QPPMAV-FPRILG 82
            G+P   L +E  E+ PP    EV +K+L   +  +D+   +     +PP     P + G
Sbjct: 9   HGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGG 68

Query: 83  HEAVGVVESVGGGVEEVREGDLVLP 107
           +E VG V  VG GV+ ++ GD V+P
Sbjct: 69  NEGVGEVVKVGSGVKSLKPGDWVIP 93

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 32  GKPLVMEEIEVDP--PKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVV 89
           G P V++ +E  P  P   EV+++     + + D T+ RS   P    P  LG EA GVV
Sbjct: 11  GGPEVLQAVEFTPADPAENEVQVENKAIGINYID-TYIRSGLYPPPSLPSGLGTEAAGVV 69

Query: 90  ESVGGGVEEVREGDLV 105
             VG GV+ ++ GD V
Sbjct: 70  SKVGSGVKHIKVGDRV 85

Length = 327

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 48/173 (27%), Positives = 70/173 (40%), Gaps = 37/173 (21%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSD---VTFWRSTQPPMAVFPRILGHEAVGVVES 91
           L +E+++   P  GEV I++    +   D   +   +    PM   P I G E  GVVE 
Sbjct: 14  LKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVK--PM---PHIPGAEFAGVVEE 68

Query: 92  VGGGVEEVREGDLVL---PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRD 148
           VG  V+ V++GD V+    VF    G C  C S    +C            R+G      
Sbjct: 69  VGDHVKGVKKGDRVVVYNRVF---DGTCDMCLSGNEMLC------------RNGG----- 108

Query: 149 LKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTL 201
                I  V++   + EY VV   ++ KI   I  ++A  L     T  Y  L
Sbjct: 109 -----IIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTA-YHAL 155

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 31  PGKPLVMEEIEVD--PPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
            G P V++ +E D   P AGEV +K+  + +  +DV   R   P     P   G++ VG 
Sbjct: 9   RGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGR 68

Query: 89  VESVGGGVEEVREGDLV 105
           V+++G GV     GD V
Sbjct: 69  VDALGSGVTGFEVGDRV 85

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 23  CRAAISRIPGKPLVMEEIEVD--PPKAGEVRIKILCTSLCHSD--VTFWRSTQPPMAVFP 78
            +A +   PG  L +   E++   P AGEV +K+    L   D  V  W          P
Sbjct: 1   MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSY---P 57

Query: 79  RILGHEAVGVVESVGGGVEEVREGDLVL 106
            + G +  GVV +VG  V   + GD V 
Sbjct: 58  HVPGVDGAGVVVAVGAKVTGWKVGDRVA 85

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRS-TQPPMAVFPRI 80
           RA      G P  L + ++ V  P  GEV +++  + +   D T+ R+   P +   P +
Sbjct: 2   RAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVD-TYIRAGAYPGLPPLPYV 60

Query: 81  LGHEAVGVVESVGGGVEEVREGDLV 105
            G +  GVVE+VG GV+ ++ GD V
Sbjct: 61  PGSDGAGVVEAVGEGVDGLKVGDRV 85

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 49  EVRIKILCTSLCHSDVTFWRSTQPPMAVF----PRILGHEAVGVVESVGGGVEEVREGDL 104
           +VR+++    +C SDV + ++ +   A F    P ++GHE  G++E VG  V+ +  GD 
Sbjct: 43  DVRVRMKAVGICGSDVHYLKTMR--CADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDR 100

Query: 105 VLPVFQGDCGECRDCKSPKSNIC 127
           V       C  C  CK  + N+C
Sbjct: 101 VALEPGISCWRCNLCKEGRYNLC 123

Length = 364

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 49.4 bits (119), Expect = 3e-07
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 24  RAAISRIPGKPLVMEEIEV-DP-PKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A + + PG P V+E  EV  P P  GEV I++    +  +D+   +   PP      IL
Sbjct: 2   KAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDIL 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLV 105
           G E  GVV +VG GV   + GD V
Sbjct: 62  GLEVAGVVVAVGPGVTGWKVGDRV 85

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 48.3 bits (116), Expect = 6e-07
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 34  PLVMEEIEVDPPKAG--EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVES 91
           P  + +IE+  P  G  ++ +++   S+   D T  R+   P+   P+ILG +A GVVE+
Sbjct: 15  PDSLIDIELPKPVPGGRDLLVRVEAVSVNPVD-TKVRAGGAPVPGQPKILGWDASGVVEA 73

Query: 92  VGGGVEEVREGDLV 105
           VG  V   + GD V
Sbjct: 74  VGSEVTLFKVGDEV 87

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 28/66 (42%), Positives = 35/66 (53%)

Query: 41  EVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100
           EV PP  GEVRI++   SL   D+   R   P M  +P   G EA GVV +VG  V  + 
Sbjct: 1   EVAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLA 60

Query: 101 EGDLVL 106
            GD V+
Sbjct: 61  VGDEVI 66

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 48.0 bits (115), Expect = 9e-07
 Identities = 22/69 (31%), Positives = 29/69 (42%)

Query: 29 RIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
           +  K L + E EV  P  GEV IK+    +  SD+ F +         P   G E  G 
Sbjct: 12 PLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGT 71

Query: 89 VESVGGGVE 97
          V + GGG  
Sbjct: 72 VVAAGGGPL 80

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 6/97 (6%)

Query: 34  PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVF-PRIL-GHEAVGVVES 91
           PL   E  V  P  GE+ +++    +C +D+     ++  + V  PR+  GHE VG V  
Sbjct: 14  PLRFVERPVPRPGPGELLVRVRACGVCRTDL---HVSEGDLPVHRPRVTPGHEVVGEVAG 70

Query: 92  VGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNIC 127
            G        GD V +   +  CG CR C+    N+C
Sbjct: 71  RGADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLC 107

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 24  RAAISRIPGKPLVME--EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           RA   +  G   V++  E     PK  +V IK+    +  +D    +   PP      IL
Sbjct: 3   RAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEIL 62

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQG 111
           G E  G VE VG  V+  +EGD V+ +  G
Sbjct: 63  GLEVAGYVEDVGSDVKRFKEGDRVMALLPG 92

Length = 334

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 32  GKPLVMEEIEVDPPKAGE--VRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVV 89
             P  + +I++  PK G   + +++   S+   D        P  A  P+ILG +A GVV
Sbjct: 12  TDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPE-AGQPKILGWDAAGVV 70

Query: 90  ESVGGGVEEVREGDLV 105
            +VG  V   + GD V
Sbjct: 71  VAVGDEVTLFKPGDEV 86

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 31  PGKPLVMEEIEV-DP-PKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
           PG P V+  +EV  P PKAGEV I++    +   D+       PP      ILG E  G 
Sbjct: 9   PGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGE 68

Query: 89  VESVGGGVEEVREGDLV 105
           V +VG GV   + GD V
Sbjct: 69  VVAVGEGVSRWKVGDRV 85

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 21/123 (17%)

Query: 50  VRIKILCTSLCHSDVTFWRSTQPPMAVF--PRILGHEAVGVVESVGGGVEEVREGDLVLP 107
             ++I    +C SD+ +++  +    V   P +LGHE +G +         ++EG  V  
Sbjct: 30  TLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHSDS--SGLKEGQTVAI 87

Query: 108 VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYT 167
                CG C+ C S   N C               T RF    G  ++       FT Y 
Sbjct: 88  NPSKPCGHCKYCLSHNENQC--------------TTMRFF---GSAMYFPHVDGGFTRYK 130

Query: 168 VVD 170
           VVD
Sbjct: 131 VVD 133

Length = 343

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 78  PRILGHEAVGVVESVGGGVEEVREGDLV 105
           P   G+ +VG V  VG GV   + GD V
Sbjct: 21  PLPPGYSSVGRVVEVGSGVTGFKPGDRV 48

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 19/111 (17%)

Query: 24  RAAISRIPGKPLVMEEIEVDP-PKAGEVRIKILCTSLCHSDVTFWR--------STQPPM 74
           RAA+ R    PLV+ ++  DP P  G+V +K+L   +C SD+            +  P +
Sbjct: 2   RAAVFR--DGPLVVRDVP-DPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSL 58

Query: 75  AVFPR--ILGHEAVGVVESVGGGVE-EVREGDLV--LPVFQGDCGECRDCK 120
                  +LGHE  G V   G G E +++ G  V  LP+    CG+   C 
Sbjct: 59  MDLGADIVLGHEFCGEVVDYGPGTERKLKVGTRVTSLPLLL--CGQGASCG 107

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 48  GEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLP 107
            EV +++    L   DV       P        LG E  G+V  VG GV  ++ GD V+ 
Sbjct: 1   DEVEVEVKAAGLNFRDVLVALGLLPGD---ETPLGLECSGIVTRVGSGVTGLKVGDRVMG 57

Query: 108 VFQG 111
           +  G
Sbjct: 58  LAPG 61

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 22/123 (17%)

Query: 80  ILGHEAVGVVESVGGGV------EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNK 133
           +LGHE VG V ++ GG         +R G  V+      CG C  C+      C      
Sbjct: 1   VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKY 60

Query: 134 DNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV-VDVTHVVKITPDIPLDIACLLSCG 192
            ++++          L G           + E+      T +V +  D+P  +A    C 
Sbjct: 61  GHEALDSGW-----PLSG----------GYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCA 105

Query: 193 VST 195
            +T
Sbjct: 106 TAT 108

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 35 LVMEEIEVDP-PKAGEVRIKILCTSLCHSDVTFWRSTQ--PPMAVFPRILGHEAVGVVES 91
          LV E++  DP P  G+VRI +    +   D          P     P + G E  GVV++
Sbjct: 15 LVPEDVP-DPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDA 73

Query: 92 VGGGVEEV 99
          VG GV+  
Sbjct: 74 VGPGVDPA 81

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVT----FWRSTQPPMAVFPRILGHEAVGVVE 90
           L +E+  +  P +GEVR+++    L  +D+      + S   P    P + G E  G VE
Sbjct: 14  LKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKP----PFVPGFECAGTVE 69

Query: 91  SVGGGVEEVREGDLVL 106
           +VG GV++ + GD V+
Sbjct: 70  AVGEGVKDFKVGDRVM 85

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 38  EEIEVDPPKAGEVRIKILCTSLCHSDVTF-----WRSTQPPMAVFPRILGHEAVGVVESV 92
            ++ V  P  GEV +K     +  SD+ F         +PP        G E VG V +V
Sbjct: 21  VDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFD-----CGFEGVGEVVAV 75

Query: 93  GGGVEEVREGDLV 105
           G GV + + GD V
Sbjct: 76  GEGVTDFKVGDAV 88

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 37/179 (20%), Positives = 56/179 (31%), Gaps = 51/179 (28%)

Query: 38  EEIEVDPPKAGEVRIKILCTSLCHSDV--------------------TFWRSTQPPMAVF 77
           +++ V  P  GEV I++    + ++D+                             +  F
Sbjct: 19  DDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTL-SF 77

Query: 78  PRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS 137
           PRI G + VG V +VG GV+  R G+ VL          RD             ++    
Sbjct: 78  PRIQGADIVGRVVAVGEGVDTARIGERVLVDPS-----IRDPPEDDPADIDYIGSE---- 128

Query: 138 MPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
             RDG                    F EYTVV   +   +   +         C  ST 
Sbjct: 129 --RDG-------------------GFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTA 166

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 13/86 (15%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPR----------- 79
           P + + +E++ V     GEV + ++   + +++V  W +   P++ F             
Sbjct: 26  PAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNV--WAALGEPVSTFAARQRRGRDEPYH 83

Query: 80  ILGHEAVGVVESVGGGVEEVREGDLV 105
           I G +A G+V +VG GV+  + GD V
Sbjct: 84  IGGSDASGIVWAVGEGVKNWKVGDEV 109

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 21/90 (23%)

Query: 38  EEIEVDPPKAGEVRIKILCTSLCHSD---------VTFWRSTQPPMAVFPRILGHEAVGV 88
             + +D    G+V I++  +SL + D         VT  R+       +P   G +A G 
Sbjct: 18  RTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVT--RN-------YPHTPGIDAAGT 68

Query: 89  VESVGGGVEEVREGDLVLPVFQGDCGECRD 118
           V S        REGD VL V   D G   D
Sbjct: 69  VVSS--DDPRFREGDEVL-VTGYDLGMNTD 95

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.97
PLN02740	381	Alcohol dehydrogenase-like	99.97
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.96
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.96
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.96
PLN02586	360	probable cinnamyl alcohol dehydrogenase	99.96
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.96
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.96
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.96
PLN02827	378	Alcohol dehydrogenase-like	99.95
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.95
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.95
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.95
PLN02178	375	cinnamyl-alcohol dehydrogenase	99.94
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.94
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.94
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.94
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.94
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.93
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.93
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.93
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.92
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.92
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.92
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.92
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.92
PRK10083	339	putative oxidoreductase; Provisional	99.91
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.91
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	99.91
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.91
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.91
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.91
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.91
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.91
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.9
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.9
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.9
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.9
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.89
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.89
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.89
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.89
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.89
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.89
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.88
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.88
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.88
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.88
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.87
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.87
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.87
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.87
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.87
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.87
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.87
PLN02702	364	L-idonate 5-dehydrogenase	99.86
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.86
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.86
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.86
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.86
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.85
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.85
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.85
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.85
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.85
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.84
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.84
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.84
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.84
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.84
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	99.84
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.84
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.82
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.82
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.82
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.79
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.79
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.79
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.77
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.76
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.76
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.76
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.75
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.75
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.75
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.74
PTZ00354	334	alcohol dehydrogenase; Provisional	99.74
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.74
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.73
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.72
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.72
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.72
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.72
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.71
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.71
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.71
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.7
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.7
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.7
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.7
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.69
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.67
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.66
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.64
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.63
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.63
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.63
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.62
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.61
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.59
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.59
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.58
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.56
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.55
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.49
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.42
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.41
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.31
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.18
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	98.92
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	98.08
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	97.6
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	95.6
PTZ00414	100	10 kDa heat shock protein; Provisional	86.93
PRK14533	91	groES co-chaperonin GroES; Provisional	81.85
PRK00364	95	groES co-chaperonin GroES; Reviewed	80.63

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=2.8e-39  Score=276.11  Aligned_cols=160  Identities=35%  Similarity=0.549  Sum_probs=149.7

Q ss_pred             ceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493           20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        20 ~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      +++|||+++++++++++++|++.|+|+++||+|+|+|+|+|++|+|.++|.++. .++|.++|||++|+|+++|++|++|
T Consensus         1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~-~~~P~ipGHEivG~V~~vG~~V~~~   79 (339)
T COG1064           1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPV-PKLPLIPGHEIVGTVVEVGEGVTGL   79 (339)
T ss_pred             CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCC-CCCCccCCcceEEEEEEecCCCccC
Confidence            468999999999999999999999999999999999999999999999999988 5599999999999999999999999


Q ss_pred             CCCCEEee-eccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493          100 REGDLVLP-VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (208)
Q Consensus       100 ~vGd~V~~-~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip  178 (208)
                      |+||||.+ ....+|++|++|++|++|+|+..+.   .|...+|                   +|+||+++++..++++|
T Consensus        80 k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~~~G-------------------Gyaeyv~v~~~~~~~iP  137 (339)
T COG1064          80 KVGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYTTDG-------------------GYAEYVVVPARYVVKIP  137 (339)
T ss_pred             CCCCEEEecCccCCCCCCccccCcccccCCCccc---cceeecC-------------------cceeEEEEchHHeEECC
Confidence            99999988 7789999999999999999999765   5555666                   99999999999999999


Q ss_pred             CCCCccceeeccchhHHHhheeee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al~~  202 (208)
                      +++++++||.+.|++.|+|.+|..
T Consensus       138 ~~~d~~~aApllCaGiT~y~alk~  161 (339)
T COG1064         138 EGLDLAEAAPLLCAGITTYRALKK  161 (339)
T ss_pred             CCCChhhhhhhhcCeeeEeeehhh
Confidence            999999999999999999999853

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.5e-37  Score=259.00  Aligned_cols=187  Identities=53%  Similarity=0.938  Sum_probs=174.2

Q ss_pred             cccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCC
Q 028493           17 AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (208)
Q Consensus        17 ~~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v   96 (208)
                      +..+++|||++.++++.||.++|+.+++|+.+||+||+.++++|++|.+.|+|..+. ..+|.++|||++|+|+.+|++|
T Consensus         2 ~gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~-~~fP~IlGHEaaGIVESvGegV   80 (375)
T KOG0022|consen    2 AGKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPE-GLFPVILGHEAAGIVESVGEGV   80 (375)
T ss_pred             CCCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCcc-ccCceEecccceeEEEEecCCc
Confidence            457899999999999999999999999999999999999999999999999998654 6899999999999999999999


Q ss_pred             CCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCC-CCCCcccccCCCceeeeccCcccccceEEEecCcEE
Q 028493           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (208)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~  175 (208)
                      +++++||+|+..+...|++|.+|+++..|+|.+.+...+-+.. .+|++||+ ..|..++||.+..+|+||.+++...++
T Consensus        81 ~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~-~~gk~iyHfmg~StFsEYTVv~~~~v~  159 (375)
T KOG0022|consen   81 TTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFT-CKGKPIYHFMGTSTFSEYTVVDDISVA  159 (375)
T ss_pred             cccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeee-eCCCceEEecccccceeEEEeecceeE
Confidence            9999999999999999999999999999999999887544554 48999999 889999999999999999999999999


Q ss_pred             EcCCCCCccceeeccchhHHHhheeeeeEE
Q 028493          176 KITPDIPLDIACLLSCGVSTGNYRTLVDVY  205 (208)
Q Consensus       176 ~ip~~~~~~~aa~l~~~~~ta~~al~~~~~  205 (208)
                      +|++..|++++++++|++.|+|.|....+.
T Consensus       160 kId~~aPl~kvcLLgCGvsTG~GAa~~~Ak  189 (375)
T KOG0022|consen  160 KIDPSAPLEKVCLLGCGVSTGYGAAWNTAK  189 (375)
T ss_pred             ecCCCCChhheeEeeccccccchhhhhhcc
Confidence            999999999999999999999999866554

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=1.8e-37  Score=261.65  Aligned_cols=180  Identities=43%  Similarity=0.799  Sum_probs=171.2

Q ss_pred             eeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        22 ~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      .+||+++.++++||+++|+++++|+++||+||+.++|+|++|.++.+|..|.  .+|.++|||++|+|++||++|+++|+
T Consensus         2 k~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~--~~P~vLGHEgAGiVe~VG~gVt~vkp   79 (366)
T COG1062           2 KTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPE--GFPAVLGHEGAGIVEAVGEGVTSVKP   79 (366)
T ss_pred             CceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCC--CCceecccccccEEEEecCCccccCC
Confidence            5799999999999999999999999999999999999999999999999998  59999999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      ||+|+..+...|++|++|++|+.|+|...+.....|...+|++|+. ..+...+++.+.++|+||.+++...+++++++.
T Consensus        80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls-~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~  158 (366)
T COG1062          80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLS-GNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA  158 (366)
T ss_pred             CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeee-cCCcceeeeeccccchhheeecccceEECCCCC
Confidence            9999999999999999999999999999888877888899999999 888889999999999999999999999999999


Q ss_pred             CccceeeccchhHHHhheeeeeE
Q 028493          182 PLDIACLLSCGVSTGNYRTLVDV  204 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~al~~~~  204 (208)
                      +++.+++++|++.|++.+.+..+
T Consensus       159 p~~~a~llGCgV~TG~Gav~nta  181 (366)
T COG1062         159 PLEKACLLGCGVTTGIGAVVNTA  181 (366)
T ss_pred             CccceEEEeeeeccChHHhhhcc
Confidence            99999999999999999876544

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=8.6e-35  Score=243.27  Aligned_cols=171  Identities=30%  Similarity=0.434  Sum_probs=152.3

Q ss_pred             cccccceeeeeEEEecCCC--CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEe
Q 028493           15 STAGKIIRCRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESV   92 (208)
Q Consensus        15 ~~~~~~~~~ka~~~~~~~~--~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~v   92 (208)
                      ++...|.+.++|.+..+++  ++++.++++|+++++||+|+|+++|||++|+|.++|.++. .++|.++|||++|+|+++
T Consensus         2 ~~~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~-s~~PlV~GHEiaG~Vvkv   80 (360)
T KOG0023|consen    2 SSMSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGL-SKYPLVPGHEIAGVVVKV   80 (360)
T ss_pred             CcccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCc-ccCCccCCceeeEEEEEE
Confidence            4455688899999999887  4677999999999999999999999999999999999988 899999999999999999


Q ss_pred             CCCCCCCCCCCEEe-eeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEec
Q 028493           93 GGGVEEVREGDLVL-PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV  171 (208)
Q Consensus        93 G~~v~~~~vGd~V~-~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~  171 (208)
                      |++|++|++||+|- ......|.+|++|+.|.+++|++..+. +.|...+|+..++              +|++|+++++
T Consensus        81 Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t-~~g~~~DGt~~~g--------------gf~~~~~v~~  145 (360)
T KOG0023|consen   81 GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFT-YNGVYHDGTITQG--------------GFQEYAVVDE  145 (360)
T ss_pred             CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEe-ccccccCCCCccC--------------ccceeEEEee
Confidence            99999999999994 455678999999999999999976554 3555666744433              9999999999


Q ss_pred             CcEEEcCCCCCccceeeccchhHHHhheee
Q 028493          172 THVVKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       172 ~~v~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      ..+++||++++.+.||.+.|++.|.|.+|.
T Consensus       146 ~~a~kIP~~~pl~~aAPlLCaGITvYspLk  175 (360)
T KOG0023|consen  146 VFAIKIPENLPLASAAPLLCAGITVYSPLK  175 (360)
T ss_pred             eeEEECCCCCChhhccchhhcceEEeehhH
Confidence            999999999999999999999999999984

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.9e-33  Score=235.62  Aligned_cols=157  Identities=27%  Similarity=0.448  Sum_probs=142.4

Q ss_pred             eeeeeEEEecCCCCeEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCCC--CCCCCceeccceeEEEEEeCCCCC
Q 028493           21 IRCRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVE   97 (208)
Q Consensus        21 ~~~ka~~~~~~~~~l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~~--~~~~p~~~G~e~~G~Vv~vG~~v~   97 (208)
                      ..|+|++|.++++ +++++++.|++ .|+||+|++.++|||+||+|+|.+....  ..+.|.++|||.+|+|.++|+.|+
T Consensus         3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk   81 (354)
T KOG0024|consen    3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK   81 (354)
T ss_pred             cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence            4579999999998 99999999987 8999999999999999999999877655  246899999999999999999999


Q ss_pred             CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCC-CCCCCcccccCCCceeeeccCcccccceEEEecCcEEE
Q 028493           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK  176 (208)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~  176 (208)
                      +||+||||++.+..+|+.|.+|++|+||+|+.+.+.   +. +.+|                   ++++|.+.+++.+++
T Consensus        82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~---atpp~~G-------------------~la~y~~~~~dfc~K  139 (354)
T KOG0024|consen   82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFC---ATPPVDG-------------------TLAEYYVHPADFCYK  139 (354)
T ss_pred             ccccCCeEEecCCCccccchhhhCcccccCCccccc---cCCCcCC-------------------ceEEEEEechHheee
Confidence            999999999999999999999999999999999974   22 3456                   999999999999999


Q ss_pred             cCCCCCccceeeccchhHHHhheee
Q 028493          177 ITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       177 ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +|+++++++.|++- .++++|+|..
T Consensus       140 LPd~vs~eeGAl~e-PLsV~~HAcr  163 (354)
T KOG0024|consen  140 LPDNVSFEEGALIE-PLSVGVHACR  163 (354)
T ss_pred             CCCCCchhhccccc-chhhhhhhhh
Confidence            99999999998874 4889999873

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.97  E-value=2.7e-30  Score=225.64  Aligned_cols=177  Identities=43%  Similarity=0.821  Sum_probs=145.7

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||+++...+..+++++++.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|++|
T Consensus         2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~~~G   80 (368)
T TIGR02818         2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPE-GVFPVILGHEGAGIVEAVGEGVTSVKVG   80 (368)
T ss_pred             ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCC-CCCCeeeccccEEEEEEECCCCccCCCC
Confidence            799999988877999999999999999999999999999999999887653 3578999999999999999999999999


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~  182 (208)
                      |+|+..+..+|++|++|+.|+.|+|.......+.|...+|..++. ..|..+.+..+.|+|+||+++|...++++|++++
T Consensus        81 drV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~  159 (368)
T TIGR02818        81 DHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFS-KDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAP  159 (368)
T ss_pred             CEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccc-cCCCcccccccCccceeeEEechhheEECCCCCC
Confidence            999998888999999999999999987543222333323322221 1122222222346999999999999999999999


Q ss_pred             ccceeeccchhHHHhheee
Q 028493          183 LDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       183 ~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++++++.|||+++.
T Consensus       160 ~~~aa~l~~~~~ta~~a~~  178 (368)
T TIGR02818       160 LEEVCLLGCGVTTGIGAVL  178 (368)
T ss_pred             HHHhhhhcchhHHHHHHHH
Confidence            9999999999999999874

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PLN02740 Alcohol dehydrogenase-like

Probab=99.97  E-value=3.8e-30  Score=225.69  Aligned_cols=185  Identities=53%  Similarity=0.954  Sum_probs=146.9

Q ss_pred             cccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCC
Q 028493           17 AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (208)
Q Consensus        17 ~~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v   96 (208)
                      ..+|++|||++++++++++.+++++.|.|+++||+|||.+++||++|++.+.|.+.....+|.++|||++|+|+++|++|
T Consensus         5 ~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v   84 (381)
T PLN02740          5 QGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGV   84 (381)
T ss_pred             cccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCC
Confidence            34678999999999887799999999999999999999999999999999998764334678999999999999999999


Q ss_pred             CCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCC-CCCCCCcccccC-CCceeeeccCcccccceEEEecCcE
Q 028493           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS-MPRDGTNRFRDL-KGEVIHNVLNVSSFTEYTVVDVTHV  174 (208)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g-~~~~G~~~~~~~-~~~~~~~~~~~g~~~e~~~v~~~~v  174 (208)
                      ++|++||+|++.+..+|+.|++|+.|.+|+|+........+ ...+|..+++.. .+....++...|+|+||++++...+
T Consensus        85 ~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~  164 (381)
T PLN02740         85 EDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACV  164 (381)
T ss_pred             CcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHe
Confidence            99999999999999999999999999999998865310000 000111111000 0001112223469999999999999


Q ss_pred             EEcCCCCCccceeeccchhHHHhheee
Q 028493          175 VKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       175 ~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++|+++++++++++++++.|||+++.
T Consensus       165 ~~iP~~~~~~~aa~l~~~~~ta~~~~~  191 (381)
T PLN02740        165 VKIDPNAPLKKMSLLSCGVSTGVGAAW  191 (381)
T ss_pred             EECCCCCCHHHhhhhcccchhhHHHHH
Confidence            999999999999999999999998763

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.96  E-value=1.3e-29  Score=221.32  Aligned_cols=176  Identities=44%  Similarity=0.757  Sum_probs=141.9

Q ss_pred             eeeEEEecCCC--------CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCC
Q 028493           23 CRAAISRIPGK--------PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG   94 (208)
Q Consensus        23 ~ka~~~~~~~~--------~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~   94 (208)
                      |||+++.+++.        .+++++++.|+|+++||+|||.+++||++|++.+.|.++.  .+|.++|||++|+|+++|+
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~   78 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR--PLPMALGHEAAGVVVEVGE   78 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC--CCCccCCccceeEEEEeCC
Confidence            78999998653        3899999999999999999999999999999999987654  5789999999999999999


Q ss_pred             CCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcE
Q 028493           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (208)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v  174 (208)
                      +|+++++||+|+..+...|+.|..|+.|++|+|.........|....|..++. ..+..+.+..+.|+|+||+.++...+
T Consensus        79 ~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~-~~~~~~~~~~g~G~~aey~~v~~~~~  157 (371)
T cd08281          79 GVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLR-LRGGEINHHLGVSAFAEYAVVSRRSV  157 (371)
T ss_pred             CCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCccccc-ccCcccccccCcccceeeEEecccce
Confidence            99999999999988778899999999999999987654222222222211111 01111112223459999999999999


Q ss_pred             EEcCCCCCccceeeccchhHHHhheee
Q 028493          175 VKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       175 ~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++|+++++++++++.++++|||+++.
T Consensus       158 ~~lP~~l~~~~aa~~~~~~~ta~~~~~  184 (371)
T cd08281         158 VKIDKDVPLEIAALFGCAVLTGVGAVV  184 (371)
T ss_pred             EECCCCCChHHhhhhcchHHHHHHHHH
Confidence            999999999999999999999998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.96  E-value=1.7e-29  Score=220.25  Aligned_cols=178  Identities=54%  Similarity=0.953  Sum_probs=144.4

Q ss_pred             eeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        22 ~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      +|||+++.++++++++++++.|+|+++||+|||.+++||++|++.++|..+. ..+|.++|||++|+|+++|++|++|++
T Consensus         2 ~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~   80 (369)
T cd08301           2 TCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQT-PLFPRILGHEAAGIVESVGEGVTDLKP   80 (369)
T ss_pred             ccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCC-CCCCcccccccceEEEEeCCCCCcccc
Confidence            6899999988877999999999999999999999999999999999987653 467899999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCC-cccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT-NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~-~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      ||+|+..+...|++|..|+.|++|.|.........|....+. .++. ..|....++...|+|+||++++...++++|++
T Consensus        81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~  159 (369)
T cd08301          81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFS-INGKPIYHFVGTSTFSEYTVVHVGCVAKINPE  159 (369)
T ss_pred             CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccc-cCCcceeeeeccccceeEEEEecccEEECCCC
Confidence            999999888999999999999999998865321112111110 0000 11111222223458999999999999999999


Q ss_pred             CCccceeeccchhHHHhheee
Q 028493          181 IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++++++++.|+|+++.
T Consensus       160 ~~~~~aa~~~~~~~ta~~~~~  180 (369)
T cd08301         160 APLDKVCLLSCGVSTGLGAAW  180 (369)
T ss_pred             CCHHHhhhhcchhhHHHHHHH
Confidence            999999999999999998764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.96  E-value=2e-29  Score=220.03  Aligned_cols=179  Identities=51%  Similarity=0.920  Sum_probs=146.2

Q ss_pred             eeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        21 ~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      ++|||+++...+.++++++++.|.|+++||+|||++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~   79 (368)
T cd08300           1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPE-GLFPVILGHEGAGIVESVGEGVTSVK   79 (368)
T ss_pred             CcceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCcc-CCCCceeccceeEEEEEeCCCCccCC
Confidence            36899999888777999999999999999999999999999999999887654 36789999999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|+..+...|+.|++|+.+++++|+......+.|...+|..++. ..|....+..+.|+|+||+.++...++++|++
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~  158 (368)
T cd08300          80 PGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEISVAKINPE  158 (368)
T ss_pred             CCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccc-cCCcccccccccccceeEEEEchhceEeCCCC
Confidence            99999998889999999999999999987653222232223322211 11221222223469999999999999999999


Q ss_pred             CCccceeeccchhHHHhheee
Q 028493          181 IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++++.+++.|||+++.
T Consensus       159 l~~~~aa~l~~~~~ta~~a~~  179 (368)
T cd08300         159 APLDKVCLLGCGVTTGYGAVL  179 (368)
T ss_pred             CChhhhhhhccchhhhHHHHH
Confidence            999999999989999999863

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=99.96  E-value=6.9e-29  Score=216.35  Aligned_cols=167  Identities=26%  Similarity=0.413  Sum_probs=141.7

Q ss_pred             ccccccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeC
Q 028493           14 SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVG   93 (208)
Q Consensus        14 ~~~~~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG   93 (208)
                      +..+..|+.++++++++....+++.+++.|.|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG   82 (360)
T PLN02586          4 SPEEEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGF-TRYPIVPGHEIVGIVTKLG   82 (360)
T ss_pred             ChhhhchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCC-CCCCccCCcceeEEEEEEC
Confidence            445567888888888887666999999999999999999999999999999999886543 3578999999999999999


Q ss_pred             CCCCCCCCCCEEeeecc-CCCCCCccccCCCCCCCCCCccCC----CCCCCCCCCcccccCCCceeeeccCcccccceEE
Q 028493           94 GGVEEVREGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKD----NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV  168 (208)
Q Consensus        94 ~~v~~~~vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~----~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~  168 (208)
                      ++|++|++||+|+..+. ..|+.|++|+.|++|+|++..+..    ..|...+|                   +|+||++
T Consensus        83 ~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G-------------------~~aey~~  143 (360)
T PLN02586         83 KNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYG-------------------GYSDMIV  143 (360)
T ss_pred             CCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCC-------------------ccceEEE
Confidence            99999999999986543 579999999999999998754310    00222233                   9999999


Q ss_pred             EecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493          169 VDVTHVVKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       169 v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++...++++|+++++++++.+++++.|+|+++
T Consensus       144 v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al  175 (360)
T PLN02586        144 VDQHFVLRFPDNLPLDAGAPLLCAGITVYSPM  175 (360)
T ss_pred             EchHHeeeCCCCCCHHHhhhhhcchHHHHHHH
Confidence            99999999999999999999999999999876

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.96  E-value=1.1e-28  Score=217.68  Aligned_cols=161  Identities=26%  Similarity=0.374  Sum_probs=131.2

Q ss_pred             eeeeEEEecCCCCeEEEEeecCCCC-------CCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCC
Q 028493           22 RCRAAISRIPGKPLVMEEIEVDPPK-------AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG   94 (208)
Q Consensus        22 ~~ka~~~~~~~~~l~~~~~~~p~~~-------~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~   94 (208)
                      -|||+++.++++ +++++++.|.|+       ++||||||.++|||++|++++.|.++.  .+|.++|||++|+|+++|+
T Consensus         2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~   78 (393)
T TIGR02819         2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTA--PTGLVLGHEITGEVIEKGR   78 (393)
T ss_pred             CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCC--CCCccccceeEEEEEEEcC
Confidence            389999998886 999999999874       689999999999999999999886543  5689999999999999999


Q ss_pred             CCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCC---CCCCCCCCCcccccCCCceeeeccCcccccceEEEec
Q 028493           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD---NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV  171 (208)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~---~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~  171 (208)
                      +|++|++||||+..+...|+.|.+|+.|++|+|.......   .+|....|               ...|+|+||+++|.
T Consensus        79 ~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~---------------~~~G~~aey~~v~~  143 (393)
T TIGR02819        79 DVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMG---------------GWVGGQSEYVMVPY  143 (393)
T ss_pred             ccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccC---------------CCCCceEEEEEech
Confidence            9999999999999999999999999999999998753210   01110000               00239999999996


Q ss_pred             C--cEEEcCCCCCc----cceeeccchhHHHhhee
Q 028493          172 T--HVVKITPDIPL----DIACLLSCGVSTGNYRT  200 (208)
Q Consensus       172 ~--~v~~ip~~~~~----~~aa~l~~~~~ta~~al  200 (208)
                      .  .++++|++++.    .+++++.+.+.|+|+++
T Consensus       144 ~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~  178 (393)
T TIGR02819       144 ADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA  178 (393)
T ss_pred             hhCceEECCCcccccccccceeeeccHHHHHHHHH
Confidence            4  69999988653    34667777888999875

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.96  E-value=1.5e-28  Score=211.51  Aligned_cols=156  Identities=29%  Similarity=0.507  Sum_probs=138.2

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||+++++++. +++++++.|.|+++||+|||.++++|++|++.+.+.+......|.++|||++|+|+++|++|++|++|
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (339)
T cd08239           1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG   79 (339)
T ss_pred             CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence            79999998765 99999999999999999999999999999998877643222357899999999999999999999999


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~  182 (208)
                      |+|+..+...|+.|+.|+.|+.++|.....  .+|...+|                   +|+||+.++...++++|++++
T Consensus        80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~~~G-------------------~~ae~~~v~~~~~~~~P~~~~  138 (339)
T cd08239          80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWNRDG-------------------GHAEYMLVPEKTLIPLPDDLS  138 (339)
T ss_pred             CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccCCCC-------------------cceeEEEechHHeEECCCCCC
Confidence            999999999999999999999999987653  23333344                   999999999999999999999


Q ss_pred             ccceeeccchhHHHhhee
Q 028493          183 LDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       183 ~~~aa~l~~~~~ta~~al  200 (208)
                      +++++++++++.|||+++
T Consensus       139 ~~~aa~l~~~~~ta~~~l  156 (339)
T cd08239         139 FADGALLLCGIGTAYHAL  156 (339)
T ss_pred             HHHhhhhcchHHHHHHHH
Confidence            999999999999999986

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.96  E-value=2.6e-28  Score=212.75  Aligned_cols=176  Identities=51%  Similarity=0.926  Sum_probs=144.3

Q ss_pred             eeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        22 ~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      .|||+++.+.++++++++++.|.++++||+|||.++++|++|++.+.|..+.  .+|.++|||++|+|+++|++|+++++
T Consensus         2 ~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~~--~~p~i~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08277           2 KCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKAT--LFPVILGHEGAGIVESVGEGVTNLKP   79 (365)
T ss_pred             ccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCCC--CCCeecccceeEEEEeeCCCCccCCC
Confidence            5799999987777999999999999999999999999999999999887653  67899999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      ||+|+..+...|++|.+|+.|++++|+..... ..|...+|+.+++ ..|....++...|+|+||++++...++++|+++
T Consensus        80 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l  157 (365)
T cd08277          80 GDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLMPDGTSRFT-CKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA  157 (365)
T ss_pred             CCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccccCCccccc-cCCcccccccccccceeeEEEchhheEECCCCC
Confidence            99999988899999999999999999886532 1222222211111 112112222234599999999999999999999


Q ss_pred             CccceeeccchhHHHhheee
Q 028493          182 PLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++++++++++++.|||+++.
T Consensus       158 ~~~~aa~l~~~~~ta~~~~~  177 (365)
T cd08277         158 PLEHVCLLGCGFSTGYGAAW  177 (365)
T ss_pred             CHHHhhHhcchhHHHHHHHH
Confidence            99999999999999998763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PLN02827 Alcohol dehydrogenase-like

Probab=99.95  E-value=9.9e-28  Score=210.38  Aligned_cols=176  Identities=49%  Similarity=0.876  Sum_probs=138.2

Q ss_pred             cceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC
Q 028493           19 KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      ....|||+++.++++.+++++++.|.|+++||+|||.+++||++|++.+.+..    .+|.++|||++|+|+++|++|++
T Consensus         9 ~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~----~~p~i~GhE~~G~V~~vG~~v~~   84 (378)
T PLN02827          9 NVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA----LFPRIFGHEASGIVESIGEGVTE   84 (378)
T ss_pred             ccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC----CCCeeecccceEEEEEcCCCCcc
Confidence            34569999999887669999999999999999999999999999999987742    35789999999999999999999


Q ss_pred             CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCC-CCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR-DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~-~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      |++||+|+..+..+|++|.+|++|+++.|+...... .|... .+..+|. ..|..+.++...|+|+||+.++...++++
T Consensus        85 ~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~~G~~aeyv~v~~~~~~~i  162 (378)
T PLN02827         85 FEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLER-KGVMHSDQKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKV  162 (378)
T ss_pred             cCCCCEEEEecCCCCCCChhhhCcCcccccCccccc-cccccCCCccccc-ccCcccccccccccceeeEEechhheEEC
Confidence            999999999888899999999999999998753210 00000 0000000 00111111112359999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhhee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      |+++++++++++.+++.|+|+++
T Consensus       163 P~~l~~~~aa~l~~~~~~a~~~~  185 (378)
T PLN02827        163 DPLAPLHKICLLSCGVAAGLGAA  185 (378)
T ss_pred             CCCCCHHHhhhhcchhHhhHHHH
Confidence            99999999988888888888765

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.95  E-value=5.1e-28  Score=210.31  Aligned_cols=168  Identities=36%  Similarity=0.630  Sum_probs=139.2

Q ss_pred             eeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        22 ~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      +|||+++++++.++++++++.|+|+++||+|||.++++|++|++.++|..+.  .+|.++|||++|+|+++|++|++|++
T Consensus         1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~--~~p~i~G~e~~G~V~~vG~~v~~~~~   78 (358)
T TIGR03451         1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND--EFPFLLGHEAAGVVEAVGEGVTDVAP   78 (358)
T ss_pred             CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc--cCCcccccceEEEEEEeCCCCcccCC
Confidence            5899999999888999999999999999999999999999999999887543  57889999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCC-CCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      ||+|+..+...|+.|..|+.|+.++|....... ... ..+|         .........|+|+||+.++...++++|++
T Consensus        79 GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~-~~~~~~~g---------~~~~~~~~~G~~aey~~v~~~~~~~ip~~  148 (358)
T TIGR03451        79 GDYVVLNWRAVCGQCRACKRGRPWYCFDTHNAT-QKMTLTDG---------TELSPALGIGAFAEKTLVHAGQCTKVDPA  148 (358)
T ss_pred             CCEEEEccCCCCCCChHHhCcCcccCcCccccc-cccccccC---------cccccccccccccceEEEehhheEECCCC
Confidence            999999988999999999999999997532110 000 0001         00000011359999999999999999999


Q ss_pred             CCccceeeccchhHHHhheee
Q 028493          181 IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++++++++.|+|+++.
T Consensus       149 ~~~~~aa~l~~~~~ta~~~~~  169 (358)
T TIGR03451       149 ADPAAAGLLGCGVMAGLGAAV  169 (358)
T ss_pred             CChhHhhhhcccchhhHHHHH
Confidence            999999999888899997753

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.95  E-value=5.1e-27  Score=205.41  Aligned_cols=181  Identities=50%  Similarity=0.858  Sum_probs=144.8

Q ss_pred             ccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC
Q 028493           18 GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (208)
Q Consensus        18 ~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~   97 (208)
                      .+..+||++++..++++++++++|.|++.++||+|||+++++|++|++.+.|.+..  .+|.++|||++|+|+++|++++
T Consensus         3 ~~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~~--~~p~v~G~e~~G~V~~vG~~v~   80 (373)
T cd08299           3 GKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLVT--PFPVILGHEAAGIVESVGEGVT   80 (373)
T ss_pred             cccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCCC--CCCccccccceEEEEEeCCCCc
Confidence            44567999999988777999999999999999999999999999999999887633  5688999999999999999999


Q ss_pred             CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      .+++||+|+..+..+|++|.+|+.+++|.|+........|....++.+.+ ..|....++...|+|+||++++...++++
T Consensus        81 ~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~e~~~v~~~~~~~l  159 (373)
T cd08299          81 TVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVAKI  159 (373)
T ss_pred             cCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccc-cCCcccccccCCCcccceEEecccceeeC
Confidence            99999999998889999999999999999987543100111111111111 01111112222459999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhheee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      |+++++++++++.+++.|||+++.
T Consensus       160 P~~l~~~~aa~~~~~~~ta~~~~~  183 (373)
T cd08299         160 DAAAPLEKVCLIGCGFSTGYGAAV  183 (373)
T ss_pred             CCCCChHHhheeccchHHHHHHHH
Confidence            999999999999999999998753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.95  E-value=3.5e-27  Score=205.17  Aligned_cols=155  Identities=30%  Similarity=0.432  Sum_probs=123.3

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCc-eeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPR-ILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~-~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      ||+++++.+....++++.+.|.++++||+|||.++|||+||+|.+.|..+. .+.+. ++|||++|+|+++| .++.+++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~-~~~~~~i~GHE~~G~V~evG-~~~~~~~   78 (350)
T COG1063           1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPF-VPPGDIILGHEFVGEVVEVG-VVRGFKV   78 (350)
T ss_pred             CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCC-CCCCCcccCccceEEEEEec-cccCCCC
Confidence            577777776653557777777779999999999999999999999998766 33344 99999999999999 7788999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccC--CCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEE-EcC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNK--DNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV-KIT  178 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~--~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~-~ip  178 (208)
                      ||||++.+..+|+.|++|+.|.+|+|.+.++.  ...+...+|                   +|+||+.+|.+..+ .+|
T Consensus        79 GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G-------------------~~aEyv~vp~~~~~~~~p  139 (350)
T COG1063          79 GDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDG-------------------GFAEYVRVPADFNLAKLP  139 (350)
T ss_pred             CCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCC-------------------ceEEEEEeccccCeecCC
Confidence            99999999999999999999999999965431  011111334                   99999999975554 558


Q ss_pred             CCCCccceeeccchhHHHhhe
Q 028493          179 PDIPLDIACLLSCGVSTGNYR  199 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~a  199 (208)
                      +++ +.+++++...++++|++
T Consensus       140 d~~-~~~~aal~epla~~~~~  159 (350)
T COG1063         140 DGI-DEEAAALTEPLATAYHG  159 (350)
T ss_pred             CCC-ChhhhhhcChhhhhhhh
Confidence            888 56666666788888555

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=99.94  E-value=9.8e-27  Score=204.03  Aligned_cols=156  Identities=26%  Similarity=0.378  Sum_probs=130.2

Q ss_pred             eEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCE
Q 028493           25 AAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDL  104 (208)
Q Consensus        25 a~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~  104 (208)
                      +++.++..+.+++.+++.|.|+++||+|||.+++||++|++.+.|.+.. ..+|.++|||++|+|+++|++|++|++||+
T Consensus         9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~-~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdr   87 (375)
T PLN02178          9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGF-SRYPIIPGHEIVGIATKVGKNVTKFKEGDR   87 (375)
T ss_pred             EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCC-CCCCcccCceeeEEEEEECCCCCccCCCCE
Confidence            3444454445888899999999999999999999999999999887533 346889999999999999999999999999


Q ss_pred             EeeeccC-CCCCCccccCCCCCCCCCCccCC----CCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493          105 VLPVFQG-DCGECRDCKSPKSNICSKFVNKD----NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (208)
Q Consensus       105 V~~~~~~-~c~~c~~~~~g~~~~c~~~~~~~----~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~  179 (208)
                      |+..+.. .|+.|++|+.|++|+|+......    ..|...+|                   +|+||++++...++++|+
T Consensus        88 V~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G-------------------~~aey~~v~~~~~~~lP~  148 (375)
T PLN02178         88 VGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQG-------------------GYSDVIVVDHRFVLSIPD  148 (375)
T ss_pred             EEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCC-------------------ccccEEEEchHHeEECCC
Confidence            9865544 69999999999999999865310    01111223                   999999999999999999


Q ss_pred             CCCccceeeccchhHHHhhee
Q 028493          180 DIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++++.+.+++.|+|+++
T Consensus       149 ~ls~~~aa~l~~~~~ta~~al  169 (375)
T PLN02178        149 GLPSDSGAPLLCAGITVYSPM  169 (375)
T ss_pred             CCCHHHcchhhccchHHHHHH
Confidence            999999999999999999876

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.94  E-value=5.9e-27  Score=202.52  Aligned_cols=160  Identities=18%  Similarity=0.299  Sum_probs=130.0

Q ss_pred             ceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhc-CCCCC-CCCCCceeccceeEEEEEeCCCCC
Q 028493           20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR-STQPP-MAVFPRILGHEAVGVVESVGGGVE   97 (208)
Q Consensus        20 ~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~-g~~~~-~~~~p~~~G~e~~G~Vv~vG~~v~   97 (208)
                      ...+|++++++++. +++++++.| ++++||||||.+++||++|++.+. |.+.. ...+|.++|||++|+|+++  +|+
T Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~   77 (343)
T PRK09880          2 QVKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSS   77 (343)
T ss_pred             cccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCc
Confidence            34579999998888 999999987 589999999999999999999875 43321 2357899999999999999  788


Q ss_pred             CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      +|++||+|+..+..+|++|.+|+.|++++|+..+.   +|....              +....|+|+||++++...++++
T Consensus        78 ~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~--------------~~~~~G~~aey~~v~~~~~~~~  140 (343)
T PRK09880         78 GLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMY--------------FPHVDGGFTRYKVVDTAQCIPY  140 (343)
T ss_pred             cCCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eecccc--------------cCCCCCceeeeEEechHHeEEC
Confidence            99999999999999999999999999999988653   221100              0001239999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhheee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      |+++++++++ +...+++||+++.
T Consensus       141 P~~l~~~~aa-~~~~~~~a~~al~  163 (343)
T PRK09880        141 PEKADEKVMA-FAEPLAVAIHAAH  163 (343)
T ss_pred             CCCCCHHHHH-hhcHHHHHHHHHH
Confidence            9999987655 3456778998863

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.94  E-value=2.3e-26  Score=199.58  Aligned_cols=142  Identities=27%  Similarity=0.468  Sum_probs=119.6

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCC--CCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM--AVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~--~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      |||++++..+.+++++++|.|+|+++||||||.+++||++|.+.++|.++..  ...|.++|||++|+|+++|++ ++|+
T Consensus         1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~   79 (355)
T cd08230           1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS   79 (355)
T ss_pred             CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence            6899998654449999999999999999999999999999999999875431  235789999999999999999 9999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCC-CCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~  179 (208)
                      +||+|+..+...|+.|.+|+.|++++|...... ..|. ..+|                   +|+||++++...++++|+
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~~G-------------------~~aey~~~~~~~~~~~P~  139 (355)
T cd08230          80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGLHG-------------------FMREYFVDDPEYLVKVPP  139 (355)
T ss_pred             CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCCCc-------------------cceeEEEeccccEEECCC
Confidence            999999988889999999999999999865421 1121 1223                   999999999999999999


Q ss_pred             CCCccce
Q 028493          180 DIPLDIA  186 (208)
Q Consensus       180 ~~~~~~a  186 (208)
                      +++ +.+
T Consensus       140 ~~~-~~a  145 (355)
T cd08230         140 SLA-DVG  145 (355)
T ss_pred             CCC-cce
Confidence            998 443

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.94  E-value=1.2e-26  Score=199.93  Aligned_cols=153  Identities=25%  Similarity=0.389  Sum_probs=131.9

Q ss_pred             EEEecCCC----CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           26 AISRIPGK----PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        26 ~~~~~~~~----~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      +++..++.    .++++++|.|.|+++||+|||+++++|++|++.+.|.++. ...|.++|||++|+|+++|++|++|++
T Consensus         2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~   80 (329)
T TIGR02822         2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPV-HRPRVTPGHEVVGEVAGRGADAGGFAV   80 (329)
T ss_pred             eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCC-CCCCccCCcceEEEEEEECCCCcccCC
Confidence            55555553    3899999999999999999999999999999999987653 234789999999999999999999999


Q ss_pred             CCEEeeecc-CCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          102 GDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       102 Gd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      ||+|+..+. ..|+.|.+|+.|++++|+...+   .|...+|                   +|+||+.++...++++|++
T Consensus        81 Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~  138 (329)
T TIGR02822        81 GDRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWDTDG-------------------GYAEYTTVPAAFAYRLPTG  138 (329)
T ss_pred             CCEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcccCC-------------------cceeEEEeccccEEECCCC
Confidence            999987654 5799999999999999988654   3333344                   9999999999999999999


Q ss_pred             CCccceeeccchhHHHhheee
Q 028493          181 IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++.+++.+.|||+++.
T Consensus       139 ~~~~~aa~l~~~~~ta~~~~~  159 (329)
T TIGR02822       139 YDDVELAPLLCAGIIGYRALL  159 (329)
T ss_pred             CCHHHhHHHhccchHHHHHHH
Confidence            999999988899999999863

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.94  E-value=2.2e-26  Score=200.18  Aligned_cols=164  Identities=29%  Similarity=0.403  Sum_probs=137.5

Q ss_pred             eeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        21 ~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      +.+++++++.+++.+++++++.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~Vv~vG~~v~~~~   86 (357)
T PLN02514          8 KKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSKFT   86 (357)
T ss_pred             ceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCc-CCCCccCCceeeEEEEEECCCccccc
Confidence            45799999999988999999999999999999999999999999999886543 35688999999999999999999999


Q ss_pred             CCCEEeeecc-CCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493          101 EGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (208)
Q Consensus       101 vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~  179 (208)
                      +||+|+..+. ..|++|.+|++|++++|....+.... ....|              ....|+|+||++++...++++|+
T Consensus        87 ~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~-~~~~g--------------~~~~G~~aey~~v~~~~~~~iP~  151 (357)
T PLN02514         87 VGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYND-VYTDG--------------KPTQGGFASAMVVDQKFVVKIPE  151 (357)
T ss_pred             CCCEEEEcCccccCCCChhHhCCCcccCCCccccccc-cccCC--------------ccCCCccccEEEEchHHeEECCC
Confidence            9999986543 46999999999999999876431100 00011              00123999999999999999999


Q ss_pred             CCCccceeeccchhHHHhhee
Q 028493          180 DIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++++.+++++.|||+++
T Consensus       152 ~~~~~~aa~l~~~~~ta~~al  172 (357)
T PLN02514        152 GMAPEQAAPLLCAGVTVYSPL  172 (357)
T ss_pred             CCCHHHhhhhhhhHHHHHHHH
Confidence            999999999999999999876

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.93  E-value=1.1e-25  Score=194.92  Aligned_cols=152  Identities=26%  Similarity=0.458  Sum_probs=130.9

Q ss_pred             EEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEE
Q 028493           26 AISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLV  105 (208)
Q Consensus        26 ~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V  105 (208)
                      ++++++++++++++++.|.++++||+|||.++++|++|++.+.+.......+|.++|||++|+|+++|++++.+ +||+|
T Consensus         2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV   80 (349)
T TIGR03201         2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV   80 (349)
T ss_pred             ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence            45677776799999999999999999999999999999998754433224568999999999999999999887 99999


Q ss_pred             eeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC------
Q 028493          106 LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP------  179 (208)
Q Consensus       106 ~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~------  179 (208)
                      +..+..+|++|..|+.|++|+|.....   .|...+|                   +|+||+.++...++++|+      
T Consensus        81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~ae~~~v~~~~~~~ip~~~~~~~  138 (349)
T TIGR03201        81 IVPAVIPCGECELCKTGRGTICRAQKM---PGNDMQG-------------------GFASHIVVPAKGLCVVDEARLAAA  138 (349)
T ss_pred             EECCCCCCCCChhhhCcCcccCCCCCc---cCcCCCC-------------------cccceEEechHHeEECCccccccc
Confidence            999999999999999999999977543   2333344                   999999999999999998      


Q ss_pred             CCCccceeeccchhHHHhhee
Q 028493          180 DIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++++.+++.+.|+|+++
T Consensus       139 ~~~~~~~a~~~~~~~ta~~a~  159 (349)
T TIGR03201       139 GLPLEHVSVVADAVTTPYQAA  159 (349)
T ss_pred             CCCHHHhhhhcchHHHHHHHH
Confidence            889888888888999999876

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.93  E-value=3.6e-25  Score=192.98  Aligned_cols=176  Identities=48%  Similarity=0.908  Sum_probs=146.9

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      +||+++.+.+.++++++.+.|.++++||+||+.++++|++|++.+.+..+.  ..|.++|||++|+|+++|++++++++|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~~--~~~~i~g~e~~G~V~~vG~~v~~~~~G   78 (365)
T cd05279           1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPT--PLPVILGHEGAGIVESIGPGVTTLKPG   78 (365)
T ss_pred             CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccCCCC
Confidence            578999988877999999999999999999999999999999998887643  567899999999999999999999999


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~  182 (208)
                      |+|++.+...|++|.+|+.++++.|.........|...+|+.+|+ ..|...+++.+.|+|++|+.++...++++|++++
T Consensus        79 d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~  157 (365)
T cd05279          79 DKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFT-CKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAP  157 (365)
T ss_pred             CEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceee-ccCCccccccccccccceEEecCCceEECCCCCC
Confidence            999998888999999999999999988664322233334444443 1222333444456999999999999999999999


Q ss_pred             ccceeeccchhHHHhheee
Q 028493          183 LDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       183 ~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++.+++.+||+++.
T Consensus       158 ~~~a~~~~~~~~ta~~al~  176 (365)
T cd05279         158 LEKVCLIGCGFSTGYGAAV  176 (365)
T ss_pred             HHHhhHhccchhHHHHHHH
Confidence            9999999889999998764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.93  E-value=1.5e-25  Score=163.85  Aligned_cols=109  Identities=39%  Similarity=0.703  Sum_probs=95.5

Q ss_pred             CCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCC
Q 028493           47 AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNI  126 (208)
Q Consensus        47 ~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~  126 (208)
                      |+||||||++++||++|++.++|.......+|.++|||++|+|+++|++|++|++||+|++.+...|+.|++|+.+++++
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~   80 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL   80 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence            68999999999999999999999543346889999999999999999999999999999999988899999999999999


Q ss_pred             CCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493          127 CSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus       127 c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      |.....   +|...+|                   +|+||+++|.++++++
T Consensus        81 c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   81 CPNPEV---LGLGLDG-------------------GFAEYVVVPARNLVPV  109 (109)
T ss_dssp             TTTBEE---TTTSSTC-------------------SSBSEEEEEGGGEEEE
T ss_pred             CCCCCE---eEcCCCC-------------------cccCeEEEehHHEEEC
Confidence            988775   5555666                   9999999999999875

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.92  E-value=5.3e-25  Score=190.28  Aligned_cols=151  Identities=26%  Similarity=0.463  Sum_probs=126.6

Q ss_pred             eeeEEEecCCCCeEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      |||+++++++. +++++++.|.| +++||+|||.++++|++|.+.+.+...  ..+|.++|||++|+|+++|++|++|++
T Consensus         1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~v   77 (347)
T PRK10309          1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA--HYYPITLGHEFSGYVEAVGSGVDDLHP   77 (347)
T ss_pred             CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC--CCCCcccccceEEEEEEeCCCCCCCCC
Confidence            68999998876 99999999997 589999999999999999875432111  135789999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      ||+|+..+...|+.|++|+.|.+++|.....   .|...+|                   +|+||+.++...++++|+++
T Consensus        78 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~~  135 (347)
T PRK10309         78 GDAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSRRDG-------------------GNAEYIVVKRKNLFALPTDM  135 (347)
T ss_pred             CCEEEECCCcCCCCCcchhCcCcccCCCcce---eccCCCC-------------------ccceeEEeehHHeEECcCCC
Confidence            9999999888999999999999999976543   3333344                   99999999999999999999


Q ss_pred             CccceeeccchhHHHhhe
Q 028493          182 PLDIACLLSCGVSTGNYR  199 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~a  199 (208)
                      ++++++++. ...++|++
T Consensus       136 s~~~aa~~~-~~~~~~~~  152 (347)
T PRK10309        136 PIEDGAFIE-PITVGLHA  152 (347)
T ss_pred             CHHHhhhhh-HHHHHHHH
Confidence            999888763 34456665

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.92  E-value=6.9e-25  Score=189.74  Aligned_cols=148  Identities=21%  Similarity=0.234  Sum_probs=120.3

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC---CCCCCceeccceeEEEEEeCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP---MAVFPRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~---~~~~p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      -|+++++++++ ++++|++.|+ +++||+|||+++|||++|++.++|.+..   ...+|.++|||++|+|+++|.+  .|
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~~   78 (341)
T cd08237           3 NQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--TY   78 (341)
T ss_pred             ccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--cc
Confidence            37899999886 9999999995 9999999999999999999999987532   1257999999999999998764  79


Q ss_pred             CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (208)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~  179 (208)
                      ++||||+..+...|+ |..|  +..|+|....+   .|...+|                   +|+||+++|.+.++++|+
T Consensus        79 ~vGdrV~~~~~~~~~-~~~~--~~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~vP~  133 (341)
T cd08237          79 KVGTKVVMVPNTPVE-KDEI--IPENYLPSSRF---RSSGYDG-------------------FMQDYVFLPPDRLVKLPD  133 (341)
T ss_pred             CCCCEEEECCCCCch-hccc--chhccCCCcce---eEecCCC-------------------ceEEEEEEchHHeEECCC
Confidence            999999988777777 3344  46688876543   2222234                   999999999999999999


Q ss_pred             CCCccceeeccchhHHHhhee
Q 028493          180 DIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++|+++ ..++++|+++
T Consensus       134 ~l~~~~aa~~-~~~~~a~~a~  153 (341)
T cd08237         134 NVDPEVAAFT-ELVSVGVHAI  153 (341)
T ss_pred             CCChHHhhhh-chHHHHHHHH
Confidence            9999887754 4677888776

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.92  E-value=1.4e-24  Score=188.45  Aligned_cols=161  Identities=27%  Similarity=0.452  Sum_probs=137.0

Q ss_pred             eeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC-----
Q 028493           24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE-----   98 (208)
Q Consensus        24 ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~-----   98 (208)
                      |++++.++++.+++++++.|.|+++||+|||.++++|++|.+...|.++. ..+|.++|||++|+|+++|++|+.     
T Consensus         2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~~~   80 (361)
T cd08231           2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPR-VPLPIILGHEGVGRVVALGGGVTTDVAGE   80 (361)
T ss_pred             eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCC-CCCCcccccCCceEEEEeCCCccccccCC
Confidence            78999998866999999999999999999999999999999999887652 367889999999999999999986     


Q ss_pred             -CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCC-CCcccccCCCceeeeccCcccccceEEEecC-cEE
Q 028493           99 -VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD-GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT-HVV  175 (208)
Q Consensus        99 -~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~-G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~-~v~  175 (208)
                       |++||+|+.....+|++|..|+.+.+|.|.+...   +|.... |        .     ....|+|+||++++.. .++
T Consensus        81 ~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~---~~~~~~~~--------~-----~~~~g~~a~~~~v~~~~~~~  144 (361)
T cd08231          81 PLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK---YGHEASCD--------D-----PHLSGGYAEHIYLPPGTAIV  144 (361)
T ss_pred             ccCCCCEEEEcccCCCCCChhHhCcCccccccchh---cccccccc--------C-----CCCCcccceEEEecCCCceE
Confidence             9999999999989999999999999999987653   221110 0        0     0012399999999986 799


Q ss_pred             EcCCCCCccceeeccchhHHHhheee
Q 028493          176 KITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       176 ~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++|++++.+++++++++++|||+++.
T Consensus       145 ~lP~~~~~~~aa~~~~~~~ta~~al~  170 (361)
T cd08231         145 RVPDNVPDEVAAPANCALATVLAALD  170 (361)
T ss_pred             ECCCCCCHHHHHHhcCHHHHHHHHHH
Confidence            99999998888888899999999873

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.92  E-value=2.6e-24  Score=186.10  Aligned_cols=154  Identities=32%  Similarity=0.468  Sum_probs=131.2

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCC-C---------CCCCCceeccceeEEEEEe
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP-P---------MAVFPRILGHEAVGVVESV   92 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~-~---------~~~~p~~~G~e~~G~Vv~v   92 (208)
                      |||+++++++. +++++++.|+|+++||+||+.++++|++|++.+.+... .         ....|.++|||++|+|+++
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   79 (351)
T cd08233           1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV   79 (351)
T ss_pred             CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence            78999998776 99999999999999999999999999999987654311 1         0136889999999999999


Q ss_pred             CCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCC-CCCCcccccCCCceeeeccCcccccceEEEec
Q 028493           93 GGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV  171 (208)
Q Consensus        93 G~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~  171 (208)
                      |++|++|++||+|+......|++|.+|++|..++|.....   .|.. .+|                   +|++|+.++.
T Consensus        80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~a~~~~~~~  137 (351)
T cd08233          80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGGGGG-------------------GFAEYVVVPA  137 (351)
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCCCCC-------------------ceeeEEEech
Confidence            9999999999999998888999999999999999987643   2211 134                   9999999999


Q ss_pred             CcEEEcCCCCCccceeeccchhHHHhhee
Q 028493          172 THVVKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       172 ~~v~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ..++++|+++++++++++ ....|||+++
T Consensus       138 ~~~~~lP~~~~~~~aa~~-~~~~ta~~~l  165 (351)
T cd08233         138 YHVHKLPDNVPLEEAALV-EPLAVAWHAV  165 (351)
T ss_pred             HHeEECcCCCCHHHhhhc-cHHHHHHHHH
Confidence            999999999999888765 5678999886

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.92  E-value=2.9e-24  Score=187.30  Aligned_cols=179  Identities=36%  Similarity=0.699  Sum_probs=140.4

Q ss_pred             eeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        21 ~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      ++|||+++++++.++++++.+.|+++++||+|||.++++|++|++.+.|.++.  ..|.++|||++|+|+++|+++.+++
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~~--~~p~v~G~e~~G~V~~vG~~v~~~~   78 (365)
T cd08278           1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLPT--PLPAVLGHEGAGVVEAVGSAVTGLK   78 (365)
T ss_pred             CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccCC
Confidence            46899999987767999999999999999999999999999999999887653  5678999999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCcee-eeccCcccccceEEEecCcEEEcCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVI-HNVLNVSSFTEYTVVDVTHVVKITP  179 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~-~~~~~~g~~~e~~~v~~~~v~~ip~  179 (208)
                      +||+|++.. ..|+.|.+|+.++.+.|.+.......|...+|-.-+....++.. .++...|+|++|++++...++++|+
T Consensus        79 ~Gd~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~  157 (365)
T cd08278          79 PGDHVVLSF-ASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDK  157 (365)
T ss_pred             CCCEEEEcc-cCCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCC
Confidence            999999866 47999999999999999875432112222222000000000000 0011235999999999999999999


Q ss_pred             CCCccceeeccchhHHHhheeee
Q 028493          180 DIPLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al~~  202 (208)
                      ++++++++.+++++.|||.++..
T Consensus       158 ~~s~~~a~~l~~~~~ta~~~~~~  180 (365)
T cd08278         158 DVPLELLAPLGCGIQTGAGAVLN  180 (365)
T ss_pred             CCCHHHhhhhcchhhhhhHHHhh
Confidence            99999999999999999988643

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK10083 putative oxidoreductase; Provisional

Probab=99.91  E-value=4.1e-24  Score=183.64  Aligned_cols=152  Identities=33%  Similarity=0.599  Sum_probs=131.2

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||+++++++. +++++++.|+|+++||+||+.++++|++|++++.|.++. .++|.++|||++|+|+++|++|+.+++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G   78 (339)
T PRK10083          1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPF-AKYPRVIGHEFFGVIDAVGEGVDAARIG   78 (339)
T ss_pred             CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCc-CCCCcccccceEEEEEEECCCCccCCCC
Confidence            68999998886 999999999999999999999999999999999887654 3568999999999999999999999999


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~  182 (208)
                      |+|+..+...|+.|.+|..+++++|....+   .+...+|                   +|+||+.++...++++|++++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~ip~~~~  136 (339)
T PRK10083         79 ERVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVHRDG-------------------GFSEYAVVPAKNAHRIPDAIA  136 (339)
T ss_pred             CEEEEccccCCCCCccccCcCcccCCCCce---EEEccCC-------------------cceeeEEechHHeEECcCCCC
Confidence            999999888999999999999999976553   2222234                   999999999999999999999


Q ss_pred             ccceeeccchhHHHhhe
Q 028493          183 LDIACLLSCGVSTGNYR  199 (208)
Q Consensus       183 ~~~aa~l~~~~~ta~~a  199 (208)
                      +++++ +...+.++|++
T Consensus       137 ~~~a~-~~~~~~~a~~~  152 (339)
T PRK10083        137 DQYAV-MVEPFTIAANV  152 (339)
T ss_pred             HHHHh-hhchHHHHHHH
Confidence            88766 44566677753

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.91  E-value=5.5e-24  Score=182.95  Aligned_cols=155  Identities=32%  Similarity=0.532  Sum_probs=135.7

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||+++++++.++++++++.|+++++||+||+.++++|++|++.+.|..+. ...|.++|||++|+|+++|++++++++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~vG~~v~~~~~G   79 (333)
T cd08296           1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPG-LSYPRVPGHEVVGRIDAVGEGVSRWKVG   79 (333)
T ss_pred             CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCC-CCCCcccCcceeEEEEEECCCCccCCCC
Confidence            799999998666999999999999999999999999999999998886543 3567899999999999999999999999


Q ss_pred             CEEeeec-cCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          103 DLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       103 d~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      |+|++.+ ...|+.|.+|+.|+.+.|.....   .|...+|                   ++++|+.++...++++|+++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~~~g-------------------~~a~~~~v~~~~~~~lp~~~  137 (333)
T cd08296          80 DRVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVTRDG-------------------GYAEYMLAPAEALARIPDDL  137 (333)
T ss_pred             CEEEeccccCCCCCChhhhCcCcccCCCCCc---cCcccCC-------------------cceeEEEEchhheEeCCCCC
Confidence            9998754 46899999999999999987653   2222234                   99999999999999999999


Q ss_pred             CccceeeccchhHHHhhee
Q 028493          182 PLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++.+++++.|+|+++
T Consensus       138 ~~~~aa~l~~~~~ta~~~~  156 (333)
T cd08296         138 DAAEAAPLLCAGVTTFNAL  156 (333)
T ss_pred             CHHHhhhhhhhhHHHHHHH
Confidence            9999998999999999876

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=99.91  E-value=1.3e-24  Score=187.45  Aligned_cols=134  Identities=30%  Similarity=0.441  Sum_probs=119.2

Q ss_pred             eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      ||++++.+.+.+  |+++|++.|.|++|||||||++++||+.|....+|......++|.++|.|++|+|+++|++|++|+
T Consensus         1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~   80 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK   80 (326)
T ss_pred             CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence            689999987765  889999999999999999999999999999999997444356899999999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|+... .                        .+  .+|                   +|+||..+|.+.++++|++
T Consensus        81 ~GdrV~~~~-~------------------------~~--~~G-------------------~~AEy~~v~a~~~~~~P~~  114 (326)
T COG0604          81 VGDRVAALG-G------------------------VG--RDG-------------------GYAEYVVVPADWLVPLPDG  114 (326)
T ss_pred             CCCEEEEcc-C------------------------CC--CCC-------------------cceeEEEecHHHceeCCCC
Confidence            999998642 0                        00  224                   9999999999999999999


Q ss_pred             CCccceeeccchhHHHhheeee
Q 028493          181 IPLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~~  202 (208)
                      +++++||++++++.|||++|..
T Consensus       115 ls~~eAAal~~~~~TA~~~l~~  136 (326)
T COG0604         115 LSFEEAAALPLAGLTAWLALFD  136 (326)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999865

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.91  E-value=5.8e-24  Score=183.93  Aligned_cols=157  Identities=24%  Similarity=0.229  Sum_probs=134.7

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||+++.+++. +++++.+.|.++++||+|||.++++|++|++.+.+.+.. ...|.++|||++|+|+++|++++++++|
T Consensus         1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~-~~~~~~~G~e~~G~V~~vG~~v~~~~~G   78 (351)
T cd08285           1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPG-ERHGMILGHEAVGVVEEVGSEVKDFKPG   78 (351)
T ss_pred             CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCC-CCCCcccCcceEEEEEEecCCcCccCCC
Confidence            79999999886 899999999899999999999999999999988876543 3568899999999999999999999999


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITPD  180 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip~~  180 (208)
                      |+|+..+..+|++|..|..|+++.|.......+.+...+|                   +|+||++++..  .++++|++
T Consensus        79 d~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g-------------------~~~~y~~v~~~~~~~~~lP~~  139 (351)
T cd08285          79 DRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDG-------------------VFAEYFHVNDADANLAPLPDG  139 (351)
T ss_pred             CEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCc-------------------ceeEEEEcchhhCceEECCCC
Confidence            9999987789999999999999999875321111112233                   99999999974  89999999


Q ss_pred             CCccceeeccchhHHHhhee
Q 028493          181 IPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++++++..+.|||+++
T Consensus       140 ~~~~~aa~~~~~~~ta~~~~  159 (351)
T cd08285         140 LTDEQAVMLPDMMSTGFHGA  159 (351)
T ss_pred             CCHHHhhhhccchhhHHHHH
Confidence            99999998888889999874

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.91  E-value=8.8e-24  Score=185.68  Aligned_cols=173  Identities=26%  Similarity=0.326  Sum_probs=137.9

Q ss_pred             eeeEEEecCCCCeEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      |||+++++++. +++++++.|.| +++||+||+.++++|++|++.+.|.++. .++|.++|||++|+|+++|++++++++
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~   78 (386)
T cd08283           1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPG-MKKGDILGHEFMGVVEEVGPEVRNLKV   78 (386)
T ss_pred             CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCC-CCCCccccccceEEEEEeCCCCCCCCC
Confidence            78999998765 99999999988 4999999999999999999999998765 456889999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCC-CCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD-NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKIT  178 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~-~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip  178 (208)
                      ||+|+..+...|++|++|+.++.+.|.+..... +.+  .+|....+ ..|.........|+|++|++++..  .++++|
T Consensus        79 Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp  155 (386)
T cd08283          79 GDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAK--LYGHAGAG-IFGYSHLTGGYAGGQAEYVRVPFADVGPFKIP  155 (386)
T ss_pred             CCEEEEcCcCCCCCChhhcCCCcccCCCccccccccc--cccccccc-ccccccccCCCCCeeEEEEEcccccCeEEECC
Confidence            999999988899999999999999998764320 000  01100000 000000000113599999999987  899999


Q ss_pred             CCCCccceeeccchhHHHhhee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++++++++...+|||+++
T Consensus       156 ~~~~~~~aa~l~~~~~ta~~~l  177 (386)
T cd08283         156 DDLSDEKALFLSDILPTGYHAA  177 (386)
T ss_pred             CCCCHHHHhhhccchhhhHHHH
Confidence            9999999999999999999987

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.91  E-value=6.7e-24  Score=182.20  Aligned_cols=157  Identities=31%  Similarity=0.464  Sum_probs=140.6

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC--CCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~--~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      ||++++++++.++++++.+.|.++++||+||+.++++|++|++.+.|.+..  ...+|.++|||++|+|+++|+++.+|+
T Consensus         1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~   80 (340)
T cd05284           1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK   80 (340)
T ss_pred             CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence            689999988667999999999999999999999999999999988887642  345688999999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|+......|+.|..|..|+.++|+..++   .|...+|                   +|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~P~~  138 (340)
T cd05284          81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIGTDG-------------------GFAEYLLVPSRRLVKLPRG  138 (340)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCccCCC-------------------cceeeEEecHHHeEECCCC
Confidence            99999998888999999999999999998875   3333445                   9999999999999999999


Q ss_pred             CCccceeeccchhHHHhheee
Q 028493          181 IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++.+++++.|||+++.
T Consensus       139 ls~~~aa~l~~~~~ta~~~l~  159 (340)
T cd05284         139 LDPVEAAPLADAGLTAYHAVK  159 (340)
T ss_pred             CCHHHhhhhcchHHHHHHHHH
Confidence            999999999999999999874

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.91  E-value=2.1e-23  Score=181.56  Aligned_cols=174  Identities=44%  Similarity=0.725  Sum_probs=139.4

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||+++.+++.++++++++.|+++++||+|||.++++|+.|.+.+.|.++.  .+|.++|+|++|+|+++|+++..+++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (363)
T cd08279           1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPA--PLPAVLGHEGAGVVEEVGPGVTGVKPG   78 (363)
T ss_pred             CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCCC--CCCccccccceEEEEEeCCCccccCCC
Confidence            699999998777999999999999999999999999999999988887654  567899999999999999999999999


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCC-CCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      |+|+..+..+|++|++|.+++.+.|......  ++.. .+|..++. .-|.........|+|++|+.++.+.++++|+++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  155 (363)
T cd08279          79 DHVVLSWIPACGTCRYCSRGQPNLCDLGAGI--LGGQLPDGTRRFT-ADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDI  155 (363)
T ss_pred             CEEEECCCCCCCCChhhcCCCcccCcccccc--cccccCCCccccc-ccCccccccccCccceeeEEeccccEEECCCCC
Confidence            9999999999999999999999999764210  0100 00000000 001011111223599999999999999999999


Q ss_pred             CccceeeccchhHHHhheee
Q 028493          182 PLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++++++++++++.|||.++.
T Consensus       156 ~~~~aa~~~~~~~ta~~~~~  175 (363)
T cd08279         156 PLDRAALLGCGVTTGVGAVV  175 (363)
T ss_pred             ChHHeehhcchhHHHHHHHH
Confidence            99999999999999998864

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.91  E-value=1.9e-23  Score=178.95  Aligned_cols=155  Identities=30%  Similarity=0.462  Sum_probs=138.8

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||++++++++++++++.+.|.++++||+||+.++++|++|++...|..+. .++|.++|||++|+|+++|++++.+++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~~~G   79 (334)
T PRK13771          1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPR-MKYPVILGHEVVGTVEEVGENVKGFKPG   79 (334)
T ss_pred             CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCC-CCCCeeccccceEEEEEeCCCCccCCCC
Confidence            689999999888999999999999999999999999999999988886543 3567899999999999999999899999


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~  182 (208)
                      |+|++.....|+.|.+|..++++.|+....   +|....|                   +|++|+.++...++++|++++
T Consensus        80 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~~  137 (334)
T PRK13771         80 DRVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEELDG-------------------FFAEYAKVKVTSLVKVPPNVS  137 (334)
T ss_pred             CEEEECCCCCCcCChhhcCCCcccCccccc---cccccCc-------------------eeeeeeecchhceEECCCCCC
Confidence            999998888999999999999999988653   3333345                   999999999999999999999


Q ss_pred             ccceeeccchhHHHhhee
Q 028493          183 LDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       183 ~~~aa~l~~~~~ta~~al  200 (208)
                      +++++.+.++..++|+++
T Consensus       138 ~~~~a~l~~~~~~a~~~~  155 (334)
T PRK13771        138 DEGAVIVPCVTGMVYRGL  155 (334)
T ss_pred             HHHhhcccchHHHHHHHH
Confidence            999999999999999876

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.90  E-value=2e-23  Score=179.51  Aligned_cols=157  Identities=30%  Similarity=0.401  Sum_probs=136.8

Q ss_pred             eeeEEEecCCCCeEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      ||++++.+++. +++.+.+.|.| +++||+|||.++++|++|.+.+.|.++. .++|.++|||++|+|+++|++++++++
T Consensus         1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~   78 (347)
T cd05278           1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPG-AKHGMILGHEFVGEVVEVGSDVKRLKP   78 (347)
T ss_pred             CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCC-CCCCceeccceEEEEEEECCCccccCC
Confidence            68999998876 99999999999 8999999999999999999998887764 466899999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP  179 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip~  179 (208)
                      ||+|+..+...|+.|.+|+.|...+|+........+....|                   +|++|++++..  .++++|+
T Consensus        79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP~  139 (347)
T cd05278          79 GDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDG-------------------GQAEYVRVPYADMNLAKIPD  139 (347)
T ss_pred             CCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCC-------------------eeeEEEEecchhCeEEECCC
Confidence            99999999999999999999999999775432111111223                   99999999987  8999999


Q ss_pred             CCCccceeeccchhHHHhhee
Q 028493          180 DIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++++.+++.+.|||+++
T Consensus       140 ~~~~~~aa~l~~~~~ta~~~~  160 (347)
T cd05278         140 GLPDEDALMLSDILPTGFHGA  160 (347)
T ss_pred             CCCHHHHhhhcchhhheeehh
Confidence            999999999999999999886

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.90  E-value=4e-23  Score=176.00  Aligned_cols=156  Identities=37%  Similarity=0.639  Sum_probs=137.6

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||+++..++.++.+++.+.|.+.++||+||+.++++|++|.+.+.|..+. ...|.++|||++|+|+.+|++++.+++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~~~G   79 (332)
T cd08259           1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR-GKYPLILGHEIVGTVEEVGEGVERFKPG   79 (332)
T ss_pred             CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCC-CCCCeeccccceEEEEEECCCCccCCCC
Confidence            689999875556999999999999999999999999999999998886654 4567899999999999999999999999


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~  182 (208)
                      |+|++.....|+.|.+|+.++.++|....   ..|....|                   +|++|+.++...++++|++++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~v~~~~~~~ip~~~~  137 (332)
T cd08259          80 DRVILYYYIPCGKCEYCLSGEENLCRNRA---EYGEEVDG-------------------GFAEYVKVPERSLVKLPDNVS  137 (332)
T ss_pred             CEEEECCCCCCcCChhhhCCCcccCCCcc---ccccccCC-------------------eeeeEEEechhheEECCCCCC
Confidence            99999988899999999999999998752   23333344                   999999999999999999999


Q ss_pred             ccceeeccchhHHHhheee
Q 028493          183 LDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       183 ~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++.+++++.|||+++.
T Consensus       138 ~~~~~~~~~~~~ta~~~l~  156 (332)
T cd08259         138 DESAALAACVVGTAVHALK  156 (332)
T ss_pred             HHHHhhhccHHHHHHHHHH
Confidence            9999999999999998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.90  E-value=3.3e-23  Score=176.83  Aligned_cols=155  Identities=26%  Similarity=0.365  Sum_probs=133.3

Q ss_pred             eeeEEEecCC-CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~-~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      ||++++.+++ ..+++++.+.|+++++||+||+.++++|++|++.+.+...  ..+|.++|||++|+|+.+|++++.|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~~~   78 (325)
T cd08264           1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKV--KPMPHIPGAEFAGVVEEVGDHVKGVKK   78 (325)
T ss_pred             CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCCC--CCCCeecccceeEEEEEECCCCCCCCC
Confidence            6889997765 3488888888889999999999999999999988764221  245778999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      ||+|+......|++|.+|..|+++.|....+   +|....|                   +|++|+.++...++++|+++
T Consensus        79 Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~  136 (325)
T cd08264          79 GDRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVVSNG-------------------GYAEYIVVPEKNLFKIPDSI  136 (325)
T ss_pred             CCEEEECCCcCCCCChhhcCCCccccCccce---eeccCCC-------------------ceeeEEEcCHHHceeCCCCC
Confidence            9999998888999999999999999987553   3332334                   89999999999999999999


Q ss_pred             CccceeeccchhHHHhheee
Q 028493          182 PLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++++++.+++++.|||+++.
T Consensus       137 ~~~~~~~~~~~~~~a~~~l~  156 (325)
T cd08264         137 SDELAASLPVAALTAYHALK  156 (325)
T ss_pred             CHHHhhhhhhhhHHHHHHHH
Confidence            99999999999999998863

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.90  E-value=7.1e-23  Score=175.69  Aligned_cols=154  Identities=27%  Similarity=0.454  Sum_probs=134.5

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||+++++++...++++++.|+++++||+|||.++++|++|++.+.|..+.  ..|.++|||++|+|+.+|++++.|++|
T Consensus         1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~~G~~v~~~~~G   78 (338)
T PRK09422          1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD--KTGRILGHEGIGIVKEVGPGVTSLKVG   78 (338)
T ss_pred             CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC--CCCccCCcccceEEEEECCCCccCCCC
Confidence            799999988874448999999999999999999999999999988886543  346789999999999999999999999


Q ss_pred             CEEeeec-cCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          103 DLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       103 d~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      |+|++.+ ...|+.|.+|..+..+.|.....   .|...+|                   +|+||+.++...++++|+++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~  136 (338)
T PRK09422         79 DRVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYTVDG-------------------GMAEQCIVTADYAVKVPEGL  136 (338)
T ss_pred             CEEEEccCCCCCCCChhhcCCCcccCCCccc---cCccccC-------------------cceeEEEEchHHeEeCCCCC
Confidence            9998755 46899999999999999987653   2333344                   99999999999999999999


Q ss_pred             CccceeeccchhHHHhhee
Q 028493          182 PLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++.++..+.|||+++
T Consensus       137 ~~~~aa~l~~~~~ta~~~~  155 (338)
T PRK09422        137 DPAQASSITCAGVTTYKAI  155 (338)
T ss_pred             CHHHeehhhcchhHHHHHH
Confidence            9999999999999999886

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.89  E-value=6.7e-23  Score=177.22  Aligned_cols=154  Identities=28%  Similarity=0.427  Sum_probs=131.9

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC--------CCCCCceeccceeEEEEEeCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--------MAVFPRILGHEAVGVVESVGG   94 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~--------~~~~p~~~G~e~~G~Vv~vG~   94 (208)
                      |||+++++++. +++++.+.|+++++||+||+.++++|++|++.+.|....        ..+.|.++|||++|+|+++|+
T Consensus         1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~   79 (350)
T cd08256           1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE   79 (350)
T ss_pred             CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence            68999998876 999999999999999999999999999999988875311        014577899999999999999


Q ss_pred             CCC--CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCC--CCCCCcccccCCCceeeeccCcccccceEEEe
Q 028493           95 GVE--EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM--PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD  170 (208)
Q Consensus        95 ~v~--~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~--~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~  170 (208)
                      +|+  +|++||+|+..+...|+.|+.|+.|..+.|+....   +|.  ...|                   +|++|+.++
T Consensus        80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~g-------------------~~~~~~~~~  137 (350)
T cd08256          80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQNNVNG-------------------GMAEYMRFP  137 (350)
T ss_pred             CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeeccCCCC-------------------cceeeEEcc
Confidence            999  89999999999999999999999999999976431   222  1233                   999999999


Q ss_pred             cC-cEEEcCCCCCccceeeccchhHHHhhee
Q 028493          171 VT-HVVKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       171 ~~-~v~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      .+ .++++|+++++++++++ ..++|+|+++
T Consensus       138 ~~~~~~~lP~~~~~~~aa~~-~~~~ta~~a~  167 (350)
T cd08256         138 KEAIVHKVPDDIPPEDAILI-EPLACALHAV  167 (350)
T ss_pred             cccceEECCCCCCHHHHhhh-hHHHHHHHHH
Confidence            87 57899999999988877 7888999875

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.89  E-value=8.7e-23  Score=176.39  Aligned_cols=157  Identities=32%  Similarity=0.504  Sum_probs=136.8

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC-----------CCCCCceeccceeEEEEE
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-----------MAVFPRILGHEAVGVVES   91 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~-----------~~~~p~~~G~e~~G~Vv~   91 (208)
                      |||+++..++.++++++++.|+++++||+||+.++++|++|++.+.|.++.           ...+|.++|||++|+|++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~   80 (350)
T cd08240           1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA   80 (350)
T ss_pred             CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence            799999988877999999999999999999999999999999988875431           124567899999999999


Q ss_pred             eCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEec
Q 028493           92 VGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV  171 (208)
Q Consensus        92 vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~  171 (208)
                      +|++++.+++||+|++.+...|+.|..|.+++++.|.+..+   .|....|                   ++++|+.++.
T Consensus        81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~  138 (350)
T cd08240          81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA---LGIFQDG-------------------GYAEYVIVPH  138 (350)
T ss_pred             eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc---eeeeccC-------------------cceeeEEecH
Confidence            99999999999999999889999999999999999977532   1112233                   8999999999


Q ss_pred             CcEEEcCCCCCccceeeccchhHHHhheee
Q 028493          172 THVVKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       172 ~~v~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      ..++++|+++++.+++.+.+.+.|||+++.
T Consensus       139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~  168 (350)
T cd08240         139 SRYLVDPGGLDPALAATLACSGLTAYSAVK  168 (350)
T ss_pred             HHeeeCCCCCCHHHeehhhchhhhHHHHHH
Confidence            999999999999999999999999998863

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.89  E-value=1.1e-22  Score=175.16  Aligned_cols=161  Identities=30%  Similarity=0.424  Sum_probs=135.1

Q ss_pred             eeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCC
Q 028493           24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGD  103 (208)
Q Consensus        24 ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd  103 (208)
                      |+++++..+..|++++++.|+++++||+|||.++++|++|++.+.|.... ..+|.++|||++|+|+++|+++++|++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd   79 (337)
T cd05283           1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGP-TKYPLVPGHEIVGIVVAVGSKVTKFKVGD   79 (337)
T ss_pred             CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCC-CCCCcccCcceeeEEEEECCCCcccCCCC
Confidence            57888888877999999999999999999999999999999999887643 45688999999999999999999999999


Q ss_pred             EEe-eeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493          104 LVL-PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (208)
Q Consensus       104 ~V~-~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~  182 (208)
                      +|+ ......|++|.+|+.++.|+|+...... .|....|              ....|+|+||+.++...++++|++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~g~~~~~~~v~~~~~~~lp~~~~  144 (337)
T cd05283          80 RVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY-NGKYPDG--------------TITQGGYADHIVVDERFVFKIPEGLD  144 (337)
T ss_pred             EEEEecCCCCCCCCccccCCchhcCcchhhcc-cccccCC--------------CcCCCcceeEEEechhheEECCCCCC
Confidence            997 4445689999999999999998865420 0100001              01123899999999999999999999


Q ss_pred             ccceeeccchhHHHhhee
Q 028493          183 LDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       183 ~~~aa~l~~~~~ta~~al  200 (208)
                      +++++.+.+.+.|||+++
T Consensus       145 ~~~aa~l~~~~~ta~~~~  162 (337)
T cd05283         145 SAAAAPLLCAGITVYSPL  162 (337)
T ss_pred             HHHhhhhhhHHHHHHHHH
Confidence            999999999999999875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.89  E-value=1.2e-22  Score=172.86  Aligned_cols=156  Identities=26%  Similarity=0.416  Sum_probs=134.0

Q ss_pred             eeeEEEecCCC--CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~--~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      |||+++...+.  .+++++.+.|++.++||+||+.++++|++|++.+.|.+......|.++|||++|+|+.+|++++.|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK   80 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence            68999984433  2788888888889999999999999999999998886553335578999999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|+.....+|+.|.+|..+.+|+|....+   .|....|                   ++++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~~~~~~~~~~~~p~~  138 (342)
T cd08266          81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEHVDG-------------------GYAEYVAVPARNLLPIPDN  138 (342)
T ss_pred             CCCEEEEccccccccchhhccccccccccccc---cccccCc-------------------ceeEEEEechHHceeCCCC
Confidence            99999999889999999999999999987532   3333334                   8999999999999999999


Q ss_pred             CCccceeeccchhHHHhhee
Q 028493          181 IPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al  200 (208)
                      +++++++.+++...+||+++
T Consensus       139 ~~~~~a~~~~~~~~~a~~~l  158 (342)
T cd08266         139 LSFEEAAAAPLTFLTAWHML  158 (342)
T ss_pred             CCHHHHHhhhhHHHHHHHHH
Confidence            99999988888889999875

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.89  E-value=1.6e-22  Score=172.97  Aligned_cols=155  Identities=35%  Similarity=0.580  Sum_probs=136.0

Q ss_pred             eeeEEEecCCC----CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC
Q 028493           23 CRAAISRIPGK----PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        23 ~ka~~~~~~~~----~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      ||++++.+++.    ++++.+.+.|.++++||+||+.++++|++|++.+.|.++. ...|.++|||++|+|+.+|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~   79 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP-PKLPLIPGHEIVGRVEAVGPGVTR   79 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCC-CCCCccccccccEEEEEECCCCCC
Confidence            68999988883    4888888888899999999999999999999998887654 356789999999999999999999


Q ss_pred             CCCCCEEeeecc-CCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           99 VREGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        99 ~~vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      +++||+|++.+. .+|++|.+|+.+++++|+..++   .|...+|                   +|++|+.++...++++
T Consensus        80 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~l  137 (329)
T cd08298          80 FSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYTVDG-------------------GYAEYMVADERFAYPI  137 (329)
T ss_pred             CcCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccccCC-------------------ceEEEEEecchhEEEC
Confidence            999999987654 6899999999999999998764   3333344                   8999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhhee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      |+++++.+++.+++.+.|||+++
T Consensus       138 p~~~~~~~~~~~~~~~~ta~~~~  160 (329)
T cd08298         138 PEDYDDEEAAPLLCAGIIGYRAL  160 (329)
T ss_pred             CCCCCHHHhhHhhhhhHHHHHHH
Confidence            99999999999999999999886

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.89  E-value=2.6e-22  Score=172.98  Aligned_cols=156  Identities=31%  Similarity=0.552  Sum_probs=136.6

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||+++..++.++++++.+.|.+.++||+||+.++++|++|+..+.|.++. ..+|.++|+|++|+|+.+|+++..+++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~~~~~~~G   79 (345)
T cd08260           1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPD-VTLPHVPGHEFAGVVVEVGEDVSRWRVG   79 (345)
T ss_pred             CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCC-CCCCeeeccceeEEEEEECCCCccCCCC
Confidence            799999988877999999999999999999999999999999988887654 4568899999999999999999999999


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITPD  180 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip~~  180 (208)
                      |+|++.....|++|.+|..|..|+|+....   .+...+|                   +|++|+.++..  .++++|++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~iP~~  137 (345)
T cd08260          80 DRVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFTHPG-------------------SFAEYVAVPRADVNLVRLPDD  137 (345)
T ss_pred             CEEEECCCCCCCCCccccCcCcccCCCCcc---cccCCCC-------------------cceeEEEcccccCceEECCCC
Confidence            999987777899999999999999998642   2222234                   99999999974  89999999


Q ss_pred             CCccceeeccchhHHHhheee
Q 028493          181 IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++.++..++|||+++.
T Consensus       138 ~~~~~aa~l~~~~~ta~~~l~  158 (345)
T cd08260         138 VDFVTAAGLGCRFATAFRALV  158 (345)
T ss_pred             CCHHHhhhhccchHHHHHHHH
Confidence            999999988889999999863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.88  E-value=4.8e-22  Score=173.92  Aligned_cols=163  Identities=26%  Similarity=0.372  Sum_probs=133.2

Q ss_pred             eeeEEEecCCCCeEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      ||++++.+++. +++++++.|.+ +++||+|||.++++|++|++.+.|.++.  ..|.++|||++|+|+++|++++.+++
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~~--~~p~~~g~e~~G~V~~vG~~v~~~~~   77 (375)
T cd08282           1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGA--EPGLVLGHEAMGEVEEVGSAVESLKV   77 (375)
T ss_pred             CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCC--CCCceeccccEEEEEEeCCCCCcCCC
Confidence            68899988875 99999999996 7999999999999999999999887654  56889999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP  179 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip~  179 (208)
                      ||+|+..+..+|+.|..|+.++.+.|......  ++....|      ..+    .....|+|++|++++..  .++++|+
T Consensus        78 Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~--~~~~~~~------~~~----~~~~~g~~a~y~~v~~~~~~~~~lP~  145 (375)
T cd08282          78 GDRVVVPFNVACGRCRNCKRGLTGVCLTVNPG--RAGGAYG------YVD----MGPYGGGQAEYLRVPYADFNLLKLPD  145 (375)
T ss_pred             CCEEEEeCCCCCCCCHHHHCcCcccCCCCCcc--ccccccc------ccc----cCCCCCeeeeEEEeecccCcEEECCC
Confidence            99999998999999999999999999764321  0000011      000    00012499999999975  8999999


Q ss_pred             CCCcc---ceeeccchhHHHhhee
Q 028493          180 DIPLD---IACLLSCGVSTGNYRT  200 (208)
Q Consensus       180 ~~~~~---~aa~l~~~~~ta~~al  200 (208)
                      +++++   +++.+....+|||+++
T Consensus       146 ~~~~~~~~~~a~~~~~~~ta~~a~  169 (375)
T cd08282         146 RDGAKEKDDYLMLSDIFPTGWHGL  169 (375)
T ss_pred             CCChhhhhheeeecchHHHHHHHH
Confidence            99998   5677888899999986

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.88  E-value=3.1e-22  Score=172.47  Aligned_cols=155  Identities=28%  Similarity=0.416  Sum_probs=134.3

Q ss_pred             eeeEEEecCCCCeEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      |||++++++++ +++++.+.|+| +++||+|||.++++|++|++.+.|.++. ...|.++|||++|+|+++|++++++++
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~v~~~~~   78 (345)
T cd08286           1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPT-VTPGRILGHEGVGVVEEVGSAVTNFKV   78 (345)
T ss_pred             CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCC-CCCCceecccceEEEEEeccCccccCC
Confidence            68999998886 99999999986 8999999999999999999999887654 345789999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP  179 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip~  179 (208)
                      ||+|+......|+.|.+|..+.++.|....+.  .|....|                   +|++|+.++..  .++++|+
T Consensus        79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g-------------------~~~~~~~v~~~~~~~~~lp~  137 (345)
T cd08286          79 GDRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNLIDG-------------------TQAEYVRIPHADNSLYKLPE  137 (345)
T ss_pred             CCEEEECCcCCCCCChHHHCcCcccCCCcccc--cccccCC-------------------eeeeEEEcccccCceEECCC
Confidence            99999988889999999999999988765432  1222233                   99999999987  8999999


Q ss_pred             CCCccceeeccchhHHHhhee
Q 028493          180 DIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al  200 (208)
                      +++..+++.+++.++|||.++
T Consensus       138 ~~~~~~aa~l~~~~~ta~~~~  158 (345)
T cd08286         138 GVDEEAAVMLSDILPTGYECG  158 (345)
T ss_pred             CCCHHHhhhccchhHHHHHHH
Confidence            999999999988999999864

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.88  E-value=3.5e-22  Score=176.98  Aligned_cols=135  Identities=21%  Similarity=0.277  Sum_probs=111.9

Q ss_pred             eeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhh-cCCCCC-----CCCCCceeccceeEEEEEeCC
Q 028493           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW-RSTQPP-----MAVFPRILGHEAVGVVESVGG   94 (208)
Q Consensus        21 ~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~-~g~~~~-----~~~~p~~~G~e~~G~Vv~vG~   94 (208)
                      ++||++++++++. +++++++.|+++++||+|||.+++||++|++.+ .|....     ...+|.++|||++|+|+++|+
T Consensus         1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~   79 (410)
T cd08238           1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK   79 (410)
T ss_pred             CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence            3589999999886 999999999999999999999999999999976 453211     124688999999999999999


Q ss_pred             CCC-CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC-
Q 028493           95 GVE-EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT-  172 (208)
Q Consensus        95 ~v~-~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~-  172 (208)
                      +|+ +|++||||+..+...|+.|..|..              +|...+|                   +|+||++++.. 
T Consensus        80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~~--------------~g~~~~G-------------------~~aey~~v~~~~  126 (410)
T cd08238          80 KWQGKYKPGQRFVIQPALILPDGPSCPG--------------YSYTYPG-------------------GLATYHIIPNEV  126 (410)
T ss_pred             CccCCCCCCCEEEEcCCcCCCCCCCCCC--------------ccccCCC-------------------cceEEEEecHHh
Confidence            998 699999999988888888877631              2222334                   99999999986 


Q ss_pred             ---cEEEcCCCCCccceeec
Q 028493          173 ---HVVKITPDIPLDIACLL  189 (208)
Q Consensus       173 ---~v~~ip~~~~~~~aa~l  189 (208)
                         .++++|+++++++++++
T Consensus       127 ~~~~~~~lP~~l~~~~aal~  146 (410)
T cd08238         127 MEQDCLLIYEGDGYAEASLV  146 (410)
T ss_pred             ccCCeEECCCCCCHHHHhhc
Confidence               58999999999988754

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.88  E-value=2.7e-22  Score=176.26  Aligned_cols=161  Identities=18%  Similarity=0.137  Sum_probs=134.7

Q ss_pred             cceeeeeEEEec--CCC---CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCC---------CCCCceeccc
Q 028493           19 KIIRCRAAISRI--PGK---PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM---------AVFPRILGHE   84 (208)
Q Consensus        19 ~~~~~ka~~~~~--~~~---~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~---------~~~p~~~G~e   84 (208)
                      .|.+|||++++.  .+.   .+++++++.|+++++||+|||.++++|++|++.+.|.....         ...+.++|||
T Consensus         9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e   88 (393)
T cd08246           9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD   88 (393)
T ss_pred             CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence            678899999863  232   27889999999999999999999999999999887652110         0122589999


Q ss_pred             eeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCC-CCCCcccccCCCceeeeccCcccc
Q 028493           85 AVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSF  163 (208)
Q Consensus        85 ~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~  163 (208)
                      ++|+|+++|++++.+++||+|++.+...|+.|..|..+..++|+....   +|.. .+|                   +|
T Consensus        89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~~g-------------------~~  146 (393)
T cd08246          89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYETNYG-------------------SF  146 (393)
T ss_pred             eEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccCCCC-------------------cc
Confidence            999999999999999999999999989999999999999999986543   2221 223                   99


Q ss_pred             cceEEEecCcEEEcCCCCCccceeeccchhHHHhheee
Q 028493          164 TEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       164 ~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++|++++...++++|+++++++++.+.+.+.|||+++.
T Consensus       147 a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~  184 (393)
T cd08246         147 AQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLF  184 (393)
T ss_pred             eeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHh
Confidence            99999999999999999999999988899999999864

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.87  E-value=6.9e-22  Score=174.23  Aligned_cols=161  Identities=20%  Similarity=0.177  Sum_probs=134.2

Q ss_pred             cceeeeeEEEec--CCC---CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC---------CCCCC-ceecc
Q 028493           19 KIIRCRAAISRI--PGK---PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP---------MAVFP-RILGH   83 (208)
Q Consensus        19 ~~~~~ka~~~~~--~~~---~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~---------~~~~p-~~~G~   83 (208)
                      .|.+|||+++..  +++   .+++.+.+.|.++++||+||+.++++|++|++...+....         ....| .++||
T Consensus         4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~   83 (398)
T TIGR01751         4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS   83 (398)
T ss_pred             cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence            467899999954  453   3899999999999999999999999999998876554211         00123 37999


Q ss_pred             ceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCC-CCCCCcccccCCCceeeeccCccc
Q 028493           84 EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSS  162 (208)
Q Consensus        84 e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~  162 (208)
                      |++|+|+++|++++.+++||+|+..+...|++|++|+.|+.+.|+..+.   .|. ..+|                   +
T Consensus        84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~g-------------------~  141 (398)
T TIGR01751        84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYETNFG-------------------S  141 (398)
T ss_pred             ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---ccccCCCc-------------------c
Confidence            9999999999999999999999999999999999999999999976542   111 1123                   9


Q ss_pred             ccceEEEecCcEEEcCCCCCccceeeccchhHHHhheee
Q 028493          163 FTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       163 ~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      |+||++++...++++|+++++++++.+.+...|||+++.
T Consensus       142 ~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~  180 (398)
T TIGR01751       142 FAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLV  180 (398)
T ss_pred             ceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHh
Confidence            999999999999999999999999988899999999864

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.87  E-value=7.6e-22  Score=169.94  Aligned_cols=153  Identities=29%  Similarity=0.476  Sum_probs=127.6

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCC--CCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP--PMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~--~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      ||++++.+++..+++.+.+.|.|+++||+||+.++++|++|++.+.+...  .....|.++|||++|+|+++|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~   80 (341)
T PRK05396          1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK   80 (341)
T ss_pred             CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence            68999988887799999999999999999999999999999987665321  1124577899999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|+..+..+|..|..|+.+++|+|+..++   .+...+|                   +|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~iP~~  138 (341)
T PRK05396         81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVNRPG-------------------AFAEYLVIPAFNVWKIPDD  138 (341)
T ss_pred             CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeecCCC-------------------cceeeEEechHHeEECcCC
Confidence            99999999889999999999999999987543   2222334                   9999999999999999999


Q ss_pred             CCccceeeccchhHHHhh
Q 028493          181 IPLDIACLLSCGVSTGNY  198 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~  198 (208)
                      +++++++.+ ..+.+++.
T Consensus       139 l~~~~~~~~-~~~~~~~~  155 (341)
T PRK05396        139 IPDDLAAIF-DPFGNAVH  155 (341)
T ss_pred             CCHHHhHhh-hHHHHHHH
Confidence            998887644 34444443

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.87  E-value=1.1e-21  Score=170.89  Aligned_cols=176  Identities=32%  Similarity=0.541  Sum_probs=139.9

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC---C
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE---V   99 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~---~   99 (208)
                      |||+++..++.++++++.+.|.++++||+||+.++++|++|+..+.+.++.  .+|.++|||++|+|+.+|+++++   |
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~--~~p~~~g~e~~G~v~~vG~~~~~~~~~   78 (367)
T cd08263           1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF--PPPFVLGHEISGEVVEVGPNVENPYGL   78 (367)
T ss_pred             CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC--CCCcccccccceEEEEeCCCCCCCCcC
Confidence            689999988767999999999999999999999999999999988887654  66789999999999999999988   9


Q ss_pred             CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCC-CCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS-MPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (208)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g-~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip  178 (208)
                      ++||+|++.+..+|+.|.+|..+.+++|++.......+ ....|..++....+..+.. ...|+|++|+.++...++++|
T Consensus        79 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~P  157 (367)
T cd08263          79 SVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYM-YSMGGLAEYAVVPATALAPLP  157 (367)
T ss_pred             CCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCcccc-ccCCcceeEEEechhhEEECC
Confidence            99999999888899999999999999999764210011 0111111111000000000 113489999999999999999


Q ss_pred             CCCCccceeeccchhHHHhheee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++.+++.+++.++|||+++.
T Consensus       158 ~~is~~~aa~l~~~~~tA~~~l~  180 (367)
T cd08263         158 ESLDYTESAVLGCAGFTAYGALK  180 (367)
T ss_pred             CCCCHHHHhHhcchHHHHHHHHH
Confidence            99999999999999999999873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.87  E-value=1.1e-21  Score=167.76  Aligned_cols=154  Identities=36%  Similarity=0.567  Sum_probs=134.2

Q ss_pred             eeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCC
Q 028493           24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGD  103 (208)
Q Consensus        24 ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd  103 (208)
                      ||+++++++..+++++.+.|.+.++||+||+.++++|++|.+.+.|.... ..+|.++|||++|+|+.+|++++++++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd   79 (330)
T cd08245           1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGG-SKYPLVPGHEIVGEVVEVGAGVEGRKVGD   79 (330)
T ss_pred             CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCC-CCCCcccCccceEEEEEECCCCcccccCC
Confidence            68899988666999999999999999999999999999999998887643 35678999999999999999999999999


Q ss_pred             EEeeecc-CCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493          104 LVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (208)
Q Consensus       104 ~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~  182 (208)
                      +|+.... ..|++|++|+++.+|.|++..+   .+....|                   +|++|+.++...++++|++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~  137 (330)
T cd08245          80 RVGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYTTQG-------------------GYAEYMVADAEYTVLLPDGLP  137 (330)
T ss_pred             EEEEccccCCCCCChhhhCcCcccCcCccc---cCcccCC-------------------ccccEEEEcHHHeEECCCCCC
Confidence            9987544 6799999999999999998654   2222334                   899999999999999999999


Q ss_pred             ccceeeccchhHHHhhee
Q 028493          183 LDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       183 ~~~aa~l~~~~~ta~~al  200 (208)
                      +++++.+.+...|||+++
T Consensus       138 ~~~~~~l~~~~~ta~~~l  155 (330)
T cd08245         138 LAQAAPLLCAGITVYSAL  155 (330)
T ss_pred             HHHhhhhhhhHHHHHHHH
Confidence            999998888999999876

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.87  E-value=1.2e-21  Score=168.54  Aligned_cols=158  Identities=27%  Similarity=0.433  Sum_probs=133.6

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCC-CCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPK-AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~-~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      |||+++..++. +++++++.|.|. ++||+|||.++++|+.|.+...|.++.  ..|.++|+|++|+|+++|++++.+++
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~   77 (344)
T cd08284           1 MKAVVFKGPGD-VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPS--TPGFVLGHEFVGEVVEVGPEVRTLKV   77 (344)
T ss_pred             CeeEEEecCCC-ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCCC--CCCcccccceEEEEEeeCCCccccCC
Confidence            68999988764 999999999985 999999999999999999988886653  45788999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP  179 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip~  179 (208)
                      ||+|++.+..+|++|.+|..+..+.|+....   +|..  +             .....|+|++|+.++..  .++++|+
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~-------------~~~~~g~~~~~~~v~~~~~~~~~~p~  139 (344)
T cd08284          78 GDRVVSPFTIACGECFYCRRGQSGRCAKGGL---FGYA--G-------------SPNLDGAQAEYVRVPFADGTLLKLPD  139 (344)
T ss_pred             CCEEEEcccCCCCCChHHhCcCcccCCCCcc---cccc--c-------------cCCCCCceeEEEEcccccCceEECCC
Confidence            9999998888999999999999999976532   1100  0             00012499999999964  9999999


Q ss_pred             CCCccceeeccchhHHHhheee
Q 028493          180 DIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++++++++++++.++|||+++.
T Consensus       140 ~l~~~~a~~l~~~~~ta~~~~~  161 (344)
T cd08284         140 GLSDEAALLLGDILPTGYFGAK  161 (344)
T ss_pred             CCCHHHhhhhcCchHHHHhhhH
Confidence            9999999999999999998873

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.87  E-value=9.7e-22  Score=168.01  Aligned_cols=157  Identities=31%  Similarity=0.504  Sum_probs=137.8

Q ss_pred             eeeEEEecCCCC-eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPGKP-LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~~~-l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      ||++++..++++ |.+++.+.|.++++||+||+.++++|+.|.+...|.++...+.|.++|+|++|+|+.+|++++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~   80 (338)
T cd08254           1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV   80 (338)
T ss_pred             CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence            699999999887 6778888888999999999999999999999988877643466789999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      ||+|+..+..+|+.|.+|..++.++|.....   .|....|                   +|++|+.++...++++|+++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~  138 (338)
T cd08254          81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLGIDG-------------------GFAEYIVVPARALVPVPDGV  138 (338)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccccCC-------------------cceeeEEechHHeEECCCCC
Confidence            9999998889999999999999999965432   2222234                   89999999999999999999


Q ss_pred             CccceeeccchhHHHhheee
Q 028493          182 PLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++++++.++..++|||+++.
T Consensus       139 ~~~~a~~~~~~~~ta~~~l~  158 (338)
T cd08254         139 PFAQAAVATDAVLTPYHAVV  158 (338)
T ss_pred             CHHHhhhhcchHHHHHHHHH
Confidence            99999999899999999864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.87  E-value=1.9e-21  Score=167.49  Aligned_cols=153  Identities=30%  Similarity=0.420  Sum_probs=127.5

Q ss_pred             eeeEEEecCCCCeEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      ||+++++++++ +++++.+.|.| +++||+||+.++++|++|++.+.|.++.  ..|.++|||++|+|+++|+++..+++
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~   77 (345)
T cd08287           1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT--RAPAPIGHEFVGVVEEVGSEVTSVKP   77 (345)
T ss_pred             CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC--CCCcccccceEEEEEEeCCCCCccCC
Confidence            68999998776 99999999996 8999999999999999999988887653  45789999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP  179 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip~  179 (208)
                      ||+|+......|+.|.+|..|..++|.....   .|...+|                   +|++|+.++..  .++++|+
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP~  135 (345)
T cd08287          78 GDFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAFVDG-------------------GQGEYVRVPLADGTLVKVPG  135 (345)
T ss_pred             CCEEEeccccCCCCChhhhCcCcccCCCCCc---ccCCCCC-------------------ceEEEEEcchhhCceEECCC
Confidence            9999886677899999999999999986543   3334445                   99999999964  8999999


Q ss_pred             CCCcccee-----eccchhHHHhhee
Q 028493          180 DIPLDIAC-----LLSCGVSTGNYRT  200 (208)
Q Consensus       180 ~~~~~~aa-----~l~~~~~ta~~al  200 (208)
                      +++++.+.     .+...+.|||+++
T Consensus       136 ~l~~~~~~~~~~~~l~~~~~~a~~~~  161 (345)
T cd08287         136 SPSDDEDLLPSLLALSDVMGTGHHAA  161 (345)
T ss_pred             CCChhhhhhhhhHhhhcHHHHHHHHH
Confidence            99873221     1225677888765

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.86  E-value=2.9e-21  Score=168.06  Aligned_cols=155  Identities=23%  Similarity=0.384  Sum_probs=124.2

Q ss_pred             eeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC--CCCCCceeccceeEEEEEeCCCCCCC
Q 028493           22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        22 ~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~--~~~~p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      .++++++.++.. +++++.+.|.++++||+|||.++++|++|++.+.+....  ....|.++|||++|+|+++|+++++|
T Consensus        17 ~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   95 (364)
T PLN02702         17 ENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHL   95 (364)
T ss_pred             ccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCC
Confidence            355565666655 999999888899999999999999999999988763211  12357789999999999999999999


Q ss_pred             CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCC-CCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS-MPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (208)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g-~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip  178 (208)
                      ++||+|+..+...|++|..|+.|.+++|+....   ++ ...+|                   +|++|+.++...++++|
T Consensus        96 ~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~g-------------------~~~~y~~v~~~~~~~~P  153 (364)
T PLN02702         96 VVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPPVHG-------------------SLANQVVHPADLCFKLP  153 (364)
T ss_pred             CCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCCCCC-------------------cccceEEcchHHeEECC
Confidence            999999999999999999999999999987432   11 11234                   99999999999999999


Q ss_pred             CCCCccceeeccchhHHHhhee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++++++. ....++|+++
T Consensus       154 ~~l~~~~aa~~-~~~~~a~~~~  174 (364)
T PLN02702        154 ENVSLEEGAMC-EPLSVGVHAC  174 (364)
T ss_pred             CCCCHHHHhhh-hHHHHHHHHH
Confidence            99999887752 2334466553

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.86  E-value=1.7e-21  Score=166.41  Aligned_cols=136  Identities=22%  Similarity=0.410  Sum_probs=109.6

Q ss_pred             eeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCC-hhhhhhhcCCCCCC--CCCCceeccceeEEEEEeCCCCCC
Q 028493           22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLC-HSDVTFWRSTQPPM--AVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        22 ~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~-~sD~~~~~g~~~~~--~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      +||++++.+++. +++++++.|+|+++||+|||.+++|| ++|++.+.|.++..  ..+|.++|||++|+|+++|+++ +
T Consensus         1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~   78 (308)
T TIGR01202         1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G   78 (308)
T ss_pred             CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence            378999998776 99999999999999999999999996 79999888876431  2579999999999999999998 6


Q ss_pred             CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (208)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip  178 (208)
                      |++||||+..    |..|..|..+                 ..|                   +|+||+++|.+.++++|
T Consensus        79 ~~vGdrV~~~----~~~c~~~~~~-----------------~~G-------------------~~aey~~v~~~~~~~ip  118 (308)
T TIGR01202        79 FRPGDRVFVP----GSNCYEDVRG-----------------LFG-------------------GASKRLVTPASRVCRLD  118 (308)
T ss_pred             CCCCCEEEEe----Cccccccccc-----------------cCC-------------------cccceEEcCHHHceeCC
Confidence            9999999873    2233222110                 123                   99999999999999999


Q ss_pred             CCCCccceeeccchhHHHhheee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++++++. +++. .+.|||+++.
T Consensus       119 ~~~~~~~-a~~~-~~~~a~~~~~  139 (308)
T TIGR01202       119 PALGPQG-ALLA-LAATARHAVA  139 (308)
T ss_pred             CCCCHHH-Hhhh-HHHHHHHHHH
Confidence            9998764 4443 4689999874

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.86  E-value=7.4e-22  Score=163.53  Aligned_cols=143  Identities=27%  Similarity=0.399  Sum_probs=128.8

Q ss_pred             ccccccceeeeeEEEecCCCC---eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEE
Q 028493           14 SSTAGKIIRCRAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVE   90 (208)
Q Consensus        14 ~~~~~~~~~~ka~~~~~~~~~---l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv   90 (208)
                      +++..++...|++++...++|   +++++.++|....++|+||..|+.||++|+..++|.||...++|.+-|.|++|+|+
T Consensus        11 ssa~q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv   90 (354)
T KOG0025|consen   11 SSASQMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVV   90 (354)
T ss_pred             ccccccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEE
Confidence            444467888999999999988   88899999998888899999999999999999999999988899999999999999


Q ss_pred             EeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEe
Q 028493           91 SVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD  170 (208)
Q Consensus        91 ~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~  170 (208)
                      ++|++++.|++||+|+....                                                +.|+|++|.+.+
T Consensus        91 ~vGs~vkgfk~Gd~VIp~~a------------------------------------------------~lGtW~t~~v~~  122 (354)
T KOG0025|consen   91 AVGSNVKGFKPGDWVIPLSA------------------------------------------------NLGTWRTEAVFS  122 (354)
T ss_pred             EecCCcCccCCCCeEeecCC------------------------------------------------CCccceeeEeec
Confidence            99999999999999987543                                                134999999999


Q ss_pred             cCcEEEcCCCCCccceeeccchhHHHhheeeeeE
Q 028493          171 VTHVVKITPDIPLDIACLLSCGVSTGNYRTLVDV  204 (208)
Q Consensus       171 ~~~v~~ip~~~~~~~aa~l~~~~~ta~~al~~~~  204 (208)
                      ++.++++++.++.+.||.+.+..+|||..|..-+
T Consensus       123 e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv  156 (354)
T KOG0025|consen  123 ESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFV  156 (354)
T ss_pred             ccceEEcCCcCChhhhheeccCchHHHHHHHHHH
Confidence            9999999999999999999999999999885443

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.86  E-value=5.2e-21  Score=164.45  Aligned_cols=153  Identities=31%  Similarity=0.514  Sum_probs=132.5

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      ||++++++++. +.+++.+.|++.+++|+|||.++++|++|+..+.|.++. ...|.++|+|++|+|+++|++++.+++|
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~-~~~~~~~g~~~~G~V~~~G~~v~~~~~G   78 (343)
T cd08235           1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTD-LKPPRILGHEIAGEIVEVGDGVTGFKVG   78 (343)
T ss_pred             CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCcc-CCCCcccccceEEEEEeeCCCCCCCCCC
Confidence            68999988775 999999999999999999999999999999988876532 3456789999999999999999999999


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCc-----EEEc
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH-----VVKI  177 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~-----v~~i  177 (208)
                      |+|++.....|++|+.|..+..++|....+   .|....|                   +|++|+.++...     ++++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~v~v~~~~~~~~~~~~l  136 (343)
T cd08235          79 DRVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNLYDG-------------------GFAEYVRVPAWAVKRGGVLKL  136 (343)
T ss_pred             CEEEEccCCCCCCChHHHCcCcccCCCcce---eccCCCC-------------------cceeeEEecccccccccEEEC
Confidence            999999889999999999999999977653   2322334                   999999999988     9999


Q ss_pred             CCCCCccceeeccchhHHHhhee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      |+++++.+++.+ ..+.|||+++
T Consensus       137 P~~~~~~~aa~~-~~~~~a~~~l  158 (343)
T cd08235         137 PDNVSFEEAALV-EPLACCINAQ  158 (343)
T ss_pred             CCCCCHHHHHhh-hHHHHHHHHH
Confidence            999999988765 6788999876

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.86  E-value=7e-21  Score=163.55  Aligned_cols=152  Identities=34%  Similarity=0.600  Sum_probs=129.3

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||++++.++. +++.+++.|.++++||+|||.++++|+.|.....+.++. ..+|.++|+|++|+|+.+|++++.+++|
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~~~~~~g~e~~G~V~~~G~~v~~~~~G   78 (337)
T cd08261           1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPF-ASYPRILGHELSGEVVEVGEGVAGLKVG   78 (337)
T ss_pred             CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCc-CCCCcccccccEEEEEEeCCCCCCCCCC
Confidence            68999998875 999999999999999999999999999999988876654 3457889999999999999999999999


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~  182 (208)
                      |+|+.....+|+.|..|+.++.|.|.....   .+....|                   +|++|+.++.. ++++|++++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~v~v~~~-~~~~p~~~~  135 (337)
T cd08261          79 DRVVVDPYISCGECYACRKGRPNCCENLQV---LGVHRDG-------------------GFAEYIVVPAD-ALLVPEGLS  135 (337)
T ss_pred             CEEEECCCCCCCCChhhhCcCcccCCCCCe---eeecCCC-------------------cceeEEEechh-eEECCCCCC
Confidence            999998888999999999999999954322   1111233                   89999999999 999999999


Q ss_pred             ccceeeccchhHHHhhee
Q 028493          183 LDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       183 ~~~aa~l~~~~~ta~~al  200 (208)
                      +++++++ ...+++++++
T Consensus       136 ~~~aa~~-~~~~~a~~~~  152 (337)
T cd08261         136 LDQAALV-EPLAIGAHAV  152 (337)
T ss_pred             HHHhhhh-chHHHHHHHH
Confidence            9988766 4667777664

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.85  E-value=9.7e-21  Score=162.79  Aligned_cols=157  Identities=31%  Similarity=0.526  Sum_probs=135.8

Q ss_pred             eeeEEEecCC-CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~-~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      |||+++.+++ ..+++++++.|.+.++||+||+.+.++|++|.+.+.|.++.....|.++|||++|+|+++|++++.+++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~   80 (341)
T cd08297           1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV   80 (341)
T ss_pred             CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence            7899998876 339999999999999999999999999999999888876543455678999999999999999999999


Q ss_pred             CCEEeeec-cCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          102 GDLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       102 Gd~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      ||+|+..+ ...|+.|.+|+.++.+.|+....   .|....|                   +|++|+.++...++++|++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~s~~~~~~~~~~~lp~~  138 (341)
T cd08297          81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYTVDG-------------------TFAEYAIADARYVTPIPDG  138 (341)
T ss_pred             CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccccCC-------------------cceeEEEeccccEEECCCC
Confidence            99998765 47899999999999999988654   2333344                   8999999999999999999


Q ss_pred             CCccceeeccchhHHHhheee
Q 028493          181 IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++.++....|||+++.
T Consensus       139 ~~~~~~a~l~~~~~ta~~~~~  159 (341)
T cd08297         139 LSFEQAAPLLCAGVTVYKALK  159 (341)
T ss_pred             CCHHHHHHHHcchHHHHHHHH
Confidence            999999888889999998863

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.85  E-value=6.5e-21  Score=164.01  Aligned_cols=152  Identities=31%  Similarity=0.513  Sum_probs=132.4

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||+++++.+. +.+++.+.|+++++||+||+.++++|++|.....+.+..  ..|.++|+|++|+|+.+|++++.|++|
T Consensus         1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~~--~~~~~~g~~~~G~V~~~g~~v~~~~~G   77 (343)
T cd08236           1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAY--HPPLVLGHEFSGTVEEVGSGVDDLAVG   77 (343)
T ss_pred             CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCCC--CCCcccCcceEEEEEEECCCCCcCCCC
Confidence            68999998875 999999999999999999999999999999888876533  457889999999999999999999999


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~  182 (208)
                      |+|+......|..|.+|..+....|.....   .|....|                   +|++|+.++...++++|++++
T Consensus        78 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lP~~~~  135 (343)
T cd08236          78 DRVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSRRDG-------------------AFAEYVSVPARNLIKIPDHVD  135 (343)
T ss_pred             CEEEEcCCCCCCCChhHHCcChhhCCCcce---EecccCC-------------------cccceEEechHHeEECcCCCC
Confidence            999998888899999999999999877532   3333334                   999999999999999999999


Q ss_pred             ccceeeccchhHHHhhee
Q 028493          183 LDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       183 ~~~aa~l~~~~~ta~~al  200 (208)
                      +++++++ ...+|||+++
T Consensus       136 ~~~aa~~-~~~~ta~~~l  152 (343)
T cd08236         136 YEEAAMI-EPAAVALHAV  152 (343)
T ss_pred             HHHHHhc-chHHHHHHHH
Confidence            9988776 5678999886

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.85  E-value=8.4e-21  Score=161.75  Aligned_cols=146  Identities=23%  Similarity=0.428  Sum_probs=124.3

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||+++.+++. +++++++.|+++++||+|||.++++|++|.+.+.|.++    .|.++|||++|+|+++|++   +++|
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~----~~~~~G~e~~G~Vv~~G~~---~~~G   72 (319)
T cd08242           1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP----FPGVPGHEFVGIVEEGPEA---ELVG   72 (319)
T ss_pred             CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC----CCCccCceEEEEEEEeCCC---CCCC
Confidence            68999998764 99999999999999999999999999999999888653    4678999999999999998   6899


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCC-CCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      |+|...+..+|+.|.+|..|.++.|...+.   .+. ..+|                   +|++|++++.+.++++|+++
T Consensus        73 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~  130 (319)
T cd08242          73 KRVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRDG-------------------AFAEYLTLPLENLHVVPDLV  130 (319)
T ss_pred             CeEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCCC-------------------ceEEEEEechHHeEECcCCC
Confidence            999999999999999999999999987653   222 1234                   99999999999999999999


Q ss_pred             CccceeeccchhHHHhhe
Q 028493          182 PLDIACLLSCGVSTGNYR  199 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~a  199 (208)
                      +.++++.+ ....++|.+
T Consensus       131 ~~~~aa~~-~~~~~~~~~  147 (319)
T cd08242         131 PDEQAVFA-EPLAAALEI  147 (319)
T ss_pred             CHHHhhhh-hHHHHHHHH
Confidence            99887753 344456654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.85  E-value=8.2e-21  Score=161.77  Aligned_cols=155  Identities=27%  Similarity=0.505  Sum_probs=130.9

Q ss_pred             eeeEEEecCC-CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~-~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      ||++++++.+ ..+++++++.|++.++||+|||.++++|++|.+...+.+.. ...|.++|+|++|+|+++|++++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~   79 (306)
T cd08258           1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDP-VETPVVLGHEFSGTIVEVGPDVEGWKV   79 (306)
T ss_pred             CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCc-CCCCeeeccceEEEEEEECCCcCcCCC
Confidence            5788888755 34999999999999999999999999999999888876522 245789999999999999999999999


Q ss_pred             CCEEeeecc-CCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          102 GDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       102 Gd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      ||+|+.... ..|+.|++|..+..+.|+..+.   .|....|                   +|++|++++...++++|++
T Consensus        80 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~lp~~  137 (306)
T cd08258          80 GDRVVSETTFSTCGRCPYCRRGDYNLCPHRKG---IGTQADG-------------------GFAEYVLVPEESLHELPEN  137 (306)
T ss_pred             CCEEEEccCcCCCCCCcchhCcCcccCCCCce---eeecCCC-------------------ceEEEEEcchHHeEECcCC
Confidence            999998774 6899999999999999987532   2222234                   9999999999999999999


Q ss_pred             CCccceeeccchhHHHhheee
Q 028493          181 IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++ +.....++|+++.
T Consensus       138 ~~~~~aa-~~~~~~~a~~~l~  157 (306)
T cd08258         138 LSLEAAA-LTEPLAVAVHAVA  157 (306)
T ss_pred             CCHHHHH-hhchHHHHHHHHH
Confidence            9998876 6667788988863

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.85  E-value=1e-20  Score=162.46  Aligned_cols=155  Identities=28%  Similarity=0.467  Sum_probs=125.7

Q ss_pred             EEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhc-CCCC-CCCCCCceeccceeEEEEEeCCCCCCCCCCCE
Q 028493           27 ISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR-STQP-PMAVFPRILGHEAVGVVESVGGGVEEVREGDL  104 (208)
Q Consensus        27 ~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~-g~~~-~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~  104 (208)
                      ++++.+. +.+++.+.|+++++||+|||.++++|++|.+... +... .....|.++|+|++|+|+++|++|++|++||+
T Consensus         2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~   80 (339)
T cd08232           2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR   80 (339)
T ss_pred             eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence            5677766 9999999999999999999999999999988764 3221 11245779999999999999999999999999


Q ss_pred             EeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCcc
Q 028493          105 VLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLD  184 (208)
Q Consensus       105 V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~  184 (208)
                      |+..+.++|++|.+|..|..++|..+.+   ++...    +          ..+..|+|++|++++...++++|++++.+
T Consensus        81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~----~----------~~~~~g~~~~~v~v~~~~~~~iP~~~~~~  143 (339)
T cd08232          81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAM----R----------FPHVQGGFREYLVVDASQCVPLPDGLSLR  143 (339)
T ss_pred             EEEccCCcCCCChHHhCcCcccCccccc---eeecc----c----------cCCCCCceeeEEEechHHeEECcCCCCHH
Confidence            9999999999999999999999998643   11000    0          00012399999999999999999999998


Q ss_pred             ceeeccchhHHHhhee
Q 028493          185 IACLLSCGVSTGNYRT  200 (208)
Q Consensus       185 ~aa~l~~~~~ta~~al  200 (208)
                      +++. ...++|+|+++
T Consensus       144 ~aa~-~~~~~~a~~~l  158 (339)
T cd08232         144 RAAL-AEPLAVALHAV  158 (339)
T ss_pred             Hhhh-cchHHHHHHHH
Confidence            8865 56778888876

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.84  E-value=1.6e-20  Score=160.66  Aligned_cols=152  Identities=31%  Similarity=0.510  Sum_probs=132.9

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||+++.+++. |++.+.+.|+++++||+||+.++++|++|.+...|.++.  .+|.++|+|++|+|+.+|++++++++|
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~--~~p~~~g~~~~G~v~~vG~~v~~~~~G   77 (334)
T cd08234           1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA--APPLVPGHEFAGVVVAVGSKVTGFKVG   77 (334)
T ss_pred             CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC--CCCcccccceEEEEEEeCCCCCCCCCC
Confidence            68999988775 999999999999999999999999999999998887655  467899999999999999999999999


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~  182 (208)
                      |+|+......|+.|.+|..++.++|.....   +|....|                   +|++|+.++.+.++++|++++
T Consensus        78 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~  135 (334)
T cd08234          78 DRVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVTRNG-------------------GFAEYVVVPAKQVYKIPDNLS  135 (334)
T ss_pred             CEEEEcCCcCCCCCccccCcChhhCCCcce---eccCCCC-------------------cceeEEEecHHHcEECcCCCC
Confidence            999998888899999999999999987642   3333344                   999999999999999999999


Q ss_pred             ccceeeccchhHHHhhee
Q 028493          183 LDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       183 ~~~aa~l~~~~~ta~~al  200 (208)
                      +.+++.+ ..+.++++++
T Consensus       136 ~~~aa~~-~~~~~a~~~l  152 (334)
T cd08234         136 FEEAALA-EPLSCAVHGL  152 (334)
T ss_pred             HHHHhhh-hHHHHHHHHH
Confidence            9888765 6677888765

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.84  E-value=1.4e-20  Score=162.29  Aligned_cols=153  Identities=29%  Similarity=0.509  Sum_probs=126.5

Q ss_pred             eEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCC-C-CCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           25 AAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP-P-MAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        25 a~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~-~-~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      ++++.+++. +++++.+.|.+.++||+|||.++++|++|.+.+.+... . ....|.++|+|++|+|+++|+++++|++|
T Consensus         1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (343)
T cd05285           1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG   79 (343)
T ss_pred             CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence            467788865 99999999999999999999999999999987643211 1 11356789999999999999999999999


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~  182 (208)
                      |+|++.+..+|++|++|+.|.+++|++..+..  .....|                   +|++|++++...++++|++++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~  138 (343)
T cd05285          80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAA--TPPVDG-------------------TLCRYVNHPADFCHKLPDNVS  138 (343)
T ss_pred             CEEEEccccCCCCChhHhCcCcccCcCccccc--cccCCC-------------------ceeeeEEecHHHcEECcCCCC
Confidence            99999888999999999999999999765310  011234                   999999999999999999999


Q ss_pred             ccceeeccchhHHHhhee
Q 028493          183 LDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       183 ~~~aa~l~~~~~ta~~al  200 (208)
                      +++++.+ ..+.+||+++
T Consensus       139 ~~~aa~~-~~~~~a~~~~  155 (343)
T cd05285         139 LEEGALV-EPLSVGVHAC  155 (343)
T ss_pred             HHHhhhh-hHHHHHHHHH
Confidence            9988766 4678888764

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.84  E-value=1.6e-20  Score=164.89  Aligned_cols=156  Identities=28%  Similarity=0.491  Sum_probs=127.2

Q ss_pred             eeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCC------CCCCCCCceeccceeEEEEEeCC
Q 028493           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ------PPMAVFPRILGHEAVGVVESVGG   94 (208)
Q Consensus        21 ~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~------~~~~~~p~~~G~e~~G~Vv~vG~   94 (208)
                      ..+.+.++...  .|++++++.|.++++||+|||.++++|++|++.+.+..      +....+|.++|||++|+|+++|+
T Consensus        27 ~~~~~~~~~~~--~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~  104 (384)
T cd08265          27 TNLGSKVWRYP--ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGK  104 (384)
T ss_pred             ccceeEEEeCC--CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECC
Confidence            34566666643  39999999999999999999999999999998876321      11235678999999999999999


Q ss_pred             CCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcE
Q 028493           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (208)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v  174 (208)
                      ++++|++||+|++.+..+|+.|+.|+.|+.++|.....   .|...+|                   +|++|+.++...+
T Consensus       105 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~v~v~~~~~  162 (384)
T cd08265         105 NVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFSADG-------------------AFAEYIAVNARYA  162 (384)
T ss_pred             CCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeecCCC-------------------cceeeEEechHHe
Confidence            99999999999999999999999999999999986553   3332344                   9999999999999


Q ss_pred             EEcCCCC-------CccceeeccchhHHHhheee
Q 028493          175 VKITPDI-------PLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       175 ~~ip~~~-------~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++|+.+       +.+ ++++...+++||+++.
T Consensus       163 ~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~  195 (384)
T cd08265         163 WEINELREIYSEDKAFE-AGALVEPTSVAYNGLF  195 (384)
T ss_pred             EECCccccccccCCCHH-HhhhhhHHHHHHHHHH
Confidence            9999863       444 5556667889998873

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.84  E-value=8.9e-21  Score=162.34  Aligned_cols=129  Identities=26%  Similarity=0.331  Sum_probs=111.2

Q ss_pred             eeeEEEecCCCC-----eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC
Q 028493           23 CRAAISRIPGKP-----LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (208)
Q Consensus        23 ~ka~~~~~~~~~-----l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~   97 (208)
                      |||+++++++.+     +++++++.|.|+++||+|||.++++|++|++.+.|.++....+|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL   80 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence            689999988753     788899999999999999999999999999999887654345789999999999999999999


Q ss_pred             C-CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEE
Q 028493           98 E-VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK  176 (208)
Q Consensus        98 ~-~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~  176 (208)
                      + |++||+|+....                             .+|                   +|+||++++...+++
T Consensus        81 ~~~~vGd~V~~~~~-----------------------------~~g-------------------~~a~~~~v~~~~~~~  112 (324)
T cd08291          81 AQSLIGKRVAFLAG-----------------------------SYG-------------------TYAEYAVADAQQCLP  112 (324)
T ss_pred             ccCCCCCEEEecCC-----------------------------CCC-------------------cchheeeecHHHeEE
Confidence            6 999999985321                             013                   899999999999999


Q ss_pred             cCCCCCccceeeccchhHHHhhe
Q 028493          177 ITPDIPLDIACLLSCGVSTGNYR  199 (208)
Q Consensus       177 ip~~~~~~~aa~l~~~~~ta~~a  199 (208)
                      +|+++++++++.+.+...|||.+
T Consensus       113 iP~~~~~~~aa~~~~~~~ta~~~  135 (324)
T cd08291         113 LPDGVSFEQGASSFVNPLTALGM  135 (324)
T ss_pred             CCCCCCHHHHhhhcccHHHHHHH
Confidence            99999999988777788888754

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd05281 TDH Threonine dehydrogenase

Probab=99.84  E-value=2.4e-20  Score=160.71  Aligned_cols=155  Identities=31%  Similarity=0.501  Sum_probs=127.1

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCC--CCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ--PPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~--~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      ||+++++.++..+++.+.+.|.|+++||+|||.++++|+.|++.+.+..  ......|.++|||++|+|+.+|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~   80 (341)
T cd05281           1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK   80 (341)
T ss_pred             CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence            6899999877669999999999999999999999999999988765432  11124567899999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|+..+..+|+.|+.|..+++|+|+....   .|....|                   +|++|++++...++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~v~v~~~~~~~lP~~  138 (341)
T cd05281          81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTKI---LGVDTDG-------------------CFAEYVVVPEENLWKNDKD  138 (341)
T ss_pred             CCCEEEECCccCCCCChHHHCcCcccCcccce---EeccCCC-------------------cceEEEEechHHcEECcCC
Confidence            99999998888999999999999999976432   2222233                   8999999999999999999


Q ss_pred             CCccceeeccchhHHHhhee
Q 028493          181 IPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++.+.+ ++...+.++|+++
T Consensus       139 ~~~~~a-~~~~~~~~a~~~~  157 (341)
T cd05281         139 IPPEIA-SIQEPLGNAVHTV  157 (341)
T ss_pred             CCHHHh-hhhhHHHHHHHHH
Confidence            988554 4555667777654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.84  E-value=5.2e-21  Score=156.20  Aligned_cols=133  Identities=29%  Similarity=0.319  Sum_probs=120.1

Q ss_pred             ccceeeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCC
Q 028493           18 GKIIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (208)
Q Consensus        18 ~~~~~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~   95 (208)
                      ..|...|.+++++.|..  +++++.|.|+|.++|++||..|+|+|..|..+.+|.+.. .+.|+++|-|++|+|+++|++
T Consensus         4 ~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~-~plPytpGmEaaGvVvAvG~g   82 (336)
T KOG1197|consen    4 ASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDP-APLPYTPGMEAAGVVVAVGEG   82 (336)
T ss_pred             CCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCC-CCCCcCCCcccceEEEEecCC
Confidence            45777899999988875  899999999999999999999999999999999999842 488999999999999999999


Q ss_pred             CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEE
Q 028493           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (208)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~  175 (208)
                      |+++++||||+-..                              +.|                   .|+|+..+|...+.
T Consensus        83 vtdrkvGDrVayl~------------------------------~~g-------------------~yaee~~vP~~kv~  113 (336)
T KOG1197|consen   83 VTDRKVGDRVAYLN------------------------------PFG-------------------AYAEEVTVPSVKVF  113 (336)
T ss_pred             ccccccccEEEEec------------------------------cch-------------------hhheeccccceeec
Confidence            99999999997432                              224                   99999999999999


Q ss_pred             EcCCCCCccceeeccchhHHHhhee
Q 028493          176 KITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       176 ~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++|+.+++.+||++...++|||.-+
T Consensus       114 ~vpe~i~~k~aaa~llq~lTAy~ll  138 (336)
T KOG1197|consen  114 KVPEAITLKEAAALLLQGLTAYMLL  138 (336)
T ss_pred             cCCcccCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888999999766

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.84  E-value=3.2e-20  Score=159.53  Aligned_cols=143  Identities=25%  Similarity=0.383  Sum_probs=119.4

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCC----------CCCCCCceeccceeEEEEEe
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP----------PMAVFPRILGHEAVGVVESV   92 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~----------~~~~~p~~~G~e~~G~Vv~v   92 (208)
                      |||+++.++  .+++++++.|+++++||+|||.++++|++|++.+.|...          .....|.++|+|++|+|+++
T Consensus         1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v   78 (341)
T cd08262           1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY   78 (341)
T ss_pred             CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence            689999876  599999999999999999999999999999998887321          11235788999999999999


Q ss_pred             CCCCCC-CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEec
Q 028493           93 GGGVEE-VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV  171 (208)
Q Consensus        93 G~~v~~-~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~  171 (208)
                      |+++++ |++||+|+..+...|+.|+.|..|.             .....|                   +|+||+.++.
T Consensus        79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~-------------~~~~~g-------------------~~~~~~~v~~  126 (341)
T cd08262          79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGL-------------SPEAPG-------------------GYAEYMLLSE  126 (341)
T ss_pred             CCCCcCCCCCCCEEEecCCcCCCCChhhhCCC-------------CcCCCC-------------------ceeeeEEech
Confidence            999987 9999999999999999999994321             111223                   8999999999


Q ss_pred             CcEEEcCCCCCccceeeccchhHHHhhee
Q 028493          172 THVVKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       172 ~~v~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ..++++|+++++++++ ++..+++||+++
T Consensus       127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~~  154 (341)
T cd08262         127 ALLLRVPDGLSMEDAA-LTEPLAVGLHAV  154 (341)
T ss_pred             HHeEECCCCCCHHHhh-hhhhHHHHHHHH
Confidence            9999999999998876 556778898863

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.82  E-value=1.2e-19  Score=156.28  Aligned_cols=148  Identities=28%  Similarity=0.335  Sum_probs=119.1

Q ss_pred             eeeEEEecCCCC--eEEEE-eecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC-------------------CCCCCce
Q 028493           23 CRAAISRIPGKP--LVMEE-IEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-------------------MAVFPRI   80 (208)
Q Consensus        23 ~ka~~~~~~~~~--l~~~~-~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~-------------------~~~~p~~   80 (208)
                      ||++++.+++.+  +.+.+ .+.|.+.++||+|||.++++|++|++.+.|.++.                   ...+|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            688888876643  55543 4777789999999999999999999988775431                   2356889


Q ss_pred             eccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCc
Q 028493           81 LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNV  160 (208)
Q Consensus        81 ~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~  160 (208)
                      +|||++|+|+++|+++++|++||+|+..+...|+.|..|..     |   ..   +|...+|                  
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~---~~---~~~~~~g------------------  131 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----I---DY---IGSERDG------------------  131 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----c---cc---cCCCCCc------------------
Confidence            99999999999999999999999999988778877655321     1   11   2212234                  


Q ss_pred             ccccceEEEecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493          161 SSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       161 g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                       +|++|+.++...++++|+++++++++.+.+.+.|||+++
T Consensus       132 -~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~  170 (350)
T cd08274         132 -GFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML  170 (350)
T ss_pred             -cceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH
Confidence             999999999999999999999999999999999999876

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.82  E-value=9.8e-20  Score=154.91  Aligned_cols=129  Identities=29%  Similarity=0.373  Sum_probs=112.8

Q ss_pred             eeeEEEecCCCC---eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493           23 CRAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        23 ~ka~~~~~~~~~---l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      |||+++.+++.+   +++++++.|.+.++||+|||.++++|++|++.+.|.++.....|.++|||++|+|+++|++|+.+
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~   80 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL   80 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence            689999887753   78899999999999999999999999999999988765323568899999999999999999999


Q ss_pred             CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (208)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~  179 (208)
                      ++||+|+....                              .|                   +|++|+.++...++++|+
T Consensus        81 ~~Gd~V~~~~~------------------------------~g-------------------~~~~~~~~~~~~~~~ip~  111 (324)
T cd08292          81 QVGQRVAVAPV------------------------------HG-------------------TWAEYFVAPADGLVPLPD  111 (324)
T ss_pred             CCCCEEEeccC------------------------------CC-------------------cceeEEEEchHHeEECCC
Confidence            99999986421                              13                   899999999999999999


Q ss_pred             CCCccceeeccchhHHHhhee
Q 028493          180 DIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++++.+++...|+|+++
T Consensus       112 ~~~~~~aa~~~~~~~ta~~~~  132 (324)
T cd08292         112 GISDEVAAQLIAMPLSALMLL  132 (324)
T ss_pred             CCCHHHhhhccccHHHHHHHH
Confidence            999999998888889998875

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.82  E-value=1.1e-19  Score=156.62  Aligned_cols=150  Identities=31%  Similarity=0.515  Sum_probs=125.3

Q ss_pred             ecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCC--CCCCCCceeccceeEEEEEeCCCCCCCCCCCEEe
Q 028493           29 RIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP--PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVL  106 (208)
Q Consensus        29 ~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~--~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~  106 (208)
                      ++++.++++++.+.|.|+++||+|||.++++|++|.+.+.+...  ...+.|.++|+|++|+|+++|+++++|++||+|+
T Consensus         5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   84 (340)
T TIGR00692         5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS   84 (340)
T ss_pred             ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence            56777799999999999999999999999999999987665421  1124567899999999999999999999999999


Q ss_pred             eeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccce
Q 028493          107 PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA  186 (208)
Q Consensus       107 ~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~a  186 (208)
                      ....+.|+.|..|..+..++|++.++   +|....|                   +|++|++++...++++|++++.+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~~~~~a  142 (340)
T TIGR00692        85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVDTDG-------------------CFAEYAVVPAQNIWKNPKSIPPEYA  142 (340)
T ss_pred             ECCcCCCCCChhhhCcChhhCcCcce---EeecCCC-------------------cceeEEEeehHHcEECcCCCChHhh
Confidence            99999999999999999999999753   2222334                   9999999999999999999998655


Q ss_pred             eeccchhHHHhheee
Q 028493          187 CLLSCGVSTGNYRTL  201 (208)
Q Consensus       187 a~l~~~~~ta~~al~  201 (208)
                       +++..+.++|+++.
T Consensus       143 -~~~~~~~~a~~~~~  156 (340)
T TIGR00692       143 -TIQEPLGNAVHTVL  156 (340)
T ss_pred             -hhcchHHHHHHHHH
Confidence             45667788887753

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.79  E-value=2.5e-19  Score=153.39  Aligned_cols=131  Identities=26%  Similarity=0.300  Sum_probs=110.7

Q ss_pred             eeEEEecC---CCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC
Q 028493           24 RAAISRIP---GKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        24 ka~~~~~~---~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      ||+++.++   +++  ++..++|.|+++++||+|||+++++|++|.+.+.|..+. ..+|.++|+|++|+|+++|++|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~   79 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPE-AGQPKILGWDAAGVVVAVGDEVTL   79 (336)
T ss_pred             CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCC-CCCCcccceeeEEEEEEeCCCCCC
Confidence            57788775   443  778888999999999999999999999999888776543 346789999999999999999999


Q ss_pred             CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (208)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip  178 (208)
                      |++||+|+....                           ....|                   +|++|++++...++++|
T Consensus        80 ~~~Gd~V~~~~~---------------------------~~~~g-------------------~~~~~~~v~~~~~~~ip  113 (336)
T TIGR02817        80 FKPGDEVWYAGD---------------------------IDRPG-------------------SNAEFHLVDERIVGHKP  113 (336)
T ss_pred             CCCCCEEEEcCC---------------------------CCCCC-------------------cccceEEEcHHHcccCC
Confidence            999999975310                           01123                   89999999999999999


Q ss_pred             CCCCccceeeccchhHHHhheee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++++.++++..|||+++.
T Consensus       114 ~~~~~~~aa~~~~~~~ta~~~l~  136 (336)
T TIGR02817       114 KSLSFAEAAALPLTSITAWELLF  136 (336)
T ss_pred             CCCCHHHHhhhhHHHHHHHHHHH
Confidence            99999999999999999999873

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.79  E-value=3.9e-19  Score=152.70  Aligned_cols=131  Identities=28%  Similarity=0.439  Sum_probs=113.9

Q ss_pred             eeeEEEecCCCC---eEEEEeecCCCCC-CeEEEEEEeeeCChhhhhhhcCCCCCCCC----CCceeccceeEEEEEeCC
Q 028493           23 CRAAISRIPGKP---LVMEEIEVDPPKA-GEVRIKILCTSLCHSDVTFWRSTQPPMAV----FPRILGHEAVGVVESVGG   94 (208)
Q Consensus        23 ~ka~~~~~~~~~---l~~~~~~~p~~~~-~eVlVkV~a~~l~~sD~~~~~g~~~~~~~----~p~~~G~e~~G~Vv~vG~   94 (208)
                      |||+++.+++.+   +++++.+.|+|.+ +||+||+.++++|++|.+.+.|..+....    .|.++|||++|+|+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS   80 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence            799999988765   8999999998887 99999999999999999998887543222    577999999999999999


Q ss_pred             CCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcE
Q 028493           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (208)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v  174 (208)
                      +++.|++||+|+....                             ..|                   +|++|+.++...+
T Consensus        81 ~v~~~~~Gd~V~~~~~-----------------------------~~g-------------------~~~~~~~v~~~~~  112 (341)
T cd08290          81 GVKSLKPGDWVIPLRP-----------------------------GLG-------------------TWRTHAVVPADDL  112 (341)
T ss_pred             CCCCCCCCCEEEecCC-----------------------------CCc-------------------cchheEeccHHHe
Confidence            9999999999986421                             013                   8999999999999


Q ss_pred             EEcCCCCCccceeeccchhHHHhheee
Q 028493          175 VKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       175 ~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++|+++++++++.+++..+|||+++.
T Consensus       113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~  139 (341)
T cd08290         113 IKVPNDVDPEQAATLSVNPCTAYRLLE  139 (341)
T ss_pred             EeCCCCCCHHHHHHhhccHHHHHHHHH
Confidence            999999999999999999999999874

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.79  E-value=1.4e-18  Score=147.76  Aligned_cols=133  Identities=26%  Similarity=0.306  Sum_probs=112.8

Q ss_pred             eeeEEEecCCC--CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~--~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      |||++++++++  ++++++.+.|.++++||+|||.++++|++|++.+.|..+....+|.++|||++|+|+++  +++.++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~   78 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR   78 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence            69999999886  59999999999999999999999999999999988876543456789999999999999  567899


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|+....                        ..|....|                   +|++|++++...++++|++
T Consensus        79 ~Gd~V~~~~~------------------------~~g~~~~g-------------------~~~~~~~v~~~~~~~lp~~  115 (325)
T cd05280          79 EGDEVLVTGY------------------------DLGMNTDG-------------------GFAEYVRVPADWVVPLPEG  115 (325)
T ss_pred             CCCEEEEccc------------------------ccCCCCCc-------------------eeEEEEEEchhhEEECCCC
Confidence            9999986421                        01222234                   8999999999999999999


Q ss_pred             CCccceeeccchhHHHhhee
Q 028493          181 IPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al  200 (208)
                      +++++++.+++++.|+|.++
T Consensus       116 ~~~~~aa~~~~~~~ta~~~l  135 (325)
T cd05280         116 LSLREAMILGTAGFTAALSV  135 (325)
T ss_pred             CCHHHHHhhHHHHHHHHHHH
Confidence            99999999999999998876

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.77  E-value=5.6e-18  Score=144.33  Aligned_cols=151  Identities=25%  Similarity=0.310  Sum_probs=121.8

Q ss_pred             eeeEEEecCC--CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPG--KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~--~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      |||++++..+  ..+++++.+.|.++++|++||+.++++|++|++...|.++.....|.++|||++|+|+.+|+.+.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK   80 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence            7899999664  33888888888889999999999999999999988887654345678999999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|+......|..      +..+.|....   +.|....|                   +|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~------~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~  132 (336)
T cd08276          81 VGDRVVPTFFPNWLD------GPPTAEDEAS---ALGGPIDG-------------------VLAEYVVLPEEGLVRAPDH  132 (336)
T ss_pred             CCCEEEEeccccccc------cccccccccc---ccccccCc-------------------eeeeEEEecHHHeEECCCC
Confidence            999999876655543      3334443321   12222234                   8999999999999999999


Q ss_pred             CCccceeeccchhHHHhheee
Q 028493          181 IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++.+++.+.+.+.+||+++.
T Consensus       133 ~~~~~a~~~~~~~~~a~~~l~  153 (336)
T cd08276         133 LSFEEAATLPCAGLTAWNALF  153 (336)
T ss_pred             CCHHHhhhhhHHHHHHHHHHH
Confidence            999999988889999998863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.76  E-value=3e-18  Score=147.57  Aligned_cols=132  Identities=26%  Similarity=0.270  Sum_probs=112.4

Q ss_pred             eeeEEEecCCCC---eEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCC--------------CCCCCCceeccc
Q 028493           23 CRAAISRIPGKP---LVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQP--------------PMAVFPRILGHE   84 (208)
Q Consensus        23 ~ka~~~~~~~~~---l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~--------------~~~~~p~~~G~e   84 (208)
                      |||+++++++++   +++++.+.|.| +++||+|||.++++|++|++...|...              .....|.++|||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            689999888775   88899999999 499999999999999999998877421              013458899999


Q ss_pred             eeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCccccc
Q 028493           85 AVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFT  164 (208)
Q Consensus        85 ~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~  164 (208)
                      ++|+|+++|++++++++||+|+.....                           ...|                   +|+
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~---------------------------~~~g-------------------~~~  114 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGAVPP---------------------------WSQG-------------------THA  114 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEecCC---------------------------CCCc-------------------cce
Confidence            999999999999999999999875321                           0123                   899


Q ss_pred             ceEEEecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493          165 EYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       165 e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      +|+.++...++++|+++++++++.+++.+.|+|+++
T Consensus       115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l  150 (350)
T cd08248         115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSAL  150 (350)
T ss_pred             eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHH
Confidence            999999999999999999999999999999999886

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.76  E-value=1e-18  Score=147.25  Aligned_cols=106  Identities=23%  Similarity=0.367  Sum_probs=87.7

Q ss_pred             eeccceeEEEEEeCCCCC------CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCce
Q 028493           80 ILGHEAVGVVESVGGGVE------EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEV  153 (208)
Q Consensus        80 ~~G~e~~G~Vv~vG~~v~------~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~  153 (208)
                      ++|||++|+|+++|++|+      +|++||||+..+..+|++|.+|+.|++|+|+....   .|....+    +      
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~----~------   67 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRK---YGHEALD----S------   67 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhh---cCccccc----C------
Confidence            579999999999999999      89999999998888999999999999999988654   2211100    0      


Q ss_pred             eeeccCcccccceEEEecC-cEEEcCCCCCccceeeccchhHHHhhee
Q 028493          154 IHNVLNVSSFTEYTVVDVT-HVVKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       154 ~~~~~~~g~~~e~~~v~~~-~v~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                        .....|+|+||+.+|.. .++++|+++++++++.++++..|+|+++
T Consensus        68 --~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al  113 (280)
T TIGR03366        68 --GWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL  113 (280)
T ss_pred             --CccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH
Confidence              00012399999999987 6999999999999998888999999876

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.76  E-value=6.7e-18  Score=145.61  Aligned_cols=137  Identities=31%  Similarity=0.446  Sum_probs=114.2

Q ss_pred             eeeEEEecCC-CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~-~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      |||++++.++ ..+++++++.|.++++||+|||.++++|++|++...+.+.  ...|.++|||++|+|+.+|++++.+++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~~~   78 (339)
T cd08249           1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI--PSYPAILGCDFAGTVVEVGSGVTRFKV   78 (339)
T ss_pred             CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeecccc--cCCCceeeeeeeEEEEEeCCCcCcCCC
Confidence            6899999884 2388999999999999999999999999999988766541  235678999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      ||+|+......|.                      +...+|                   +|++|++++...++++|+++
T Consensus        79 Gd~V~~~~~~~~~----------------------~~~~~g-------------------~~~~~~~v~~~~~~~ip~~~  117 (339)
T cd08249          79 GDRVAGFVHGGNP----------------------NDPRNG-------------------AFQEYVVADADLTAKIPDNI  117 (339)
T ss_pred             CCEEEEEeccccC----------------------CCCCCC-------------------cccceEEechhheEECCCCC
Confidence            9999876432111                      011123                   99999999999999999999


Q ss_pred             CccceeeccchhHHHhheeee
Q 028493          182 PLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~al~~  202 (208)
                      ++++++.+++.+.|||+++..
T Consensus       118 ~~~~~~~~~~~~~ta~~~l~~  138 (339)
T cd08249         118 SFEEAATLPVGLVTAALALFQ  138 (339)
T ss_pred             CHHHceecchHHHHHHHHHhc
Confidence            999999999999999998743

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.75  E-value=4.3e-18  Score=145.42  Aligned_cols=131  Identities=24%  Similarity=0.278  Sum_probs=112.8

Q ss_pred             eeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493           22 RCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        22 ~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      +||++++.+++.+  |++++++.|.++++||+|||.++++|++|++...|.++. ..+|.++|||++|+|+.+|++|+.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~vG~~v~~~   79 (327)
T PRK10754          1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPP-PSLPSGLGTEAAGVVSKVGSGVKHI   79 (327)
T ss_pred             CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCC-CCCCCccCcceEEEEEEeCCCCCCC
Confidence            5899999987764  888999999999999999999999999999988887654 2457889999999999999999999


Q ss_pred             CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (208)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~  179 (208)
                      ++||+|+....                             ..|                   +|++|+.++...++++|+
T Consensus        80 ~~Gd~V~~~~~-----------------------------~~g-------------------~~~~~v~v~~~~~~~lp~  111 (327)
T PRK10754         80 KVGDRVVYAQS-----------------------------ALG-------------------AYSSVHNVPADKAAILPD  111 (327)
T ss_pred             CCCCEEEECCC-----------------------------CCc-------------------ceeeEEEcCHHHceeCCC
Confidence            99999974210                             013                   899999999999999999


Q ss_pred             CCCccceeeccchhHHHhheee
Q 028493          180 DIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++++++++.++....|+|.++.
T Consensus       112 ~~~~~~~~~~~~~~~ta~~~l~  133 (327)
T PRK10754        112 AISFEQAAASFLKGLTVYYLLR  133 (327)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Confidence            9999998888888899998763

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.75  E-value=1.5e-17  Score=141.76  Aligned_cols=132  Identities=23%  Similarity=0.287  Sum_probs=109.4

Q ss_pred             eeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           24 RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        24 ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      ||++++..+.+  ++++++|.|.++++||+|||.++++|++|++.+.|.++.....|.++|||++|+|+.  ++++.|++
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~   78 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE   78 (323)
T ss_pred             CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence            67888877764  789999999999999999999999999999998887643235588999999999998  56778999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      ||+|+....                        ..|...+|                   ++++|+.++...++++|+++
T Consensus        79 Gd~V~~~~~------------------------~~~~~~~g-------------------~~~~~~~~~~~~~~~iP~~~  115 (323)
T TIGR02823        79 GDEVIVTGY------------------------GLGVSHDG-------------------GYSQYARVPADWLVPLPEGL  115 (323)
T ss_pred             CCEEEEccC------------------------CCCCCCCc-------------------cceEEEEEchhheEECCCCC
Confidence            999986421                        01111233                   99999999999999999999


Q ss_pred             CccceeeccchhHHHhhee
Q 028493          182 PLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++.+++.+.|+|.++
T Consensus       116 ~~~~aa~~~~~~~ta~~~~  134 (323)
T TIGR02823       116 SLREAMALGTAGFTAALSV  134 (323)
T ss_pred             CHHHhhhhhhhHHHHHHHH
Confidence            9999999888888888765

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.75  E-value=1.3e-17  Score=142.04  Aligned_cols=133  Identities=19%  Similarity=0.245  Sum_probs=107.7

Q ss_pred             eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      |||+++.+.+++  +.+++.+.|.++++||+||+.++++|++|.+...+.......+|.++|||++|+|+++|  ++.++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~   78 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK   78 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence            789999988764  78899999999999999999999999999876543211112457899999999999954  57899


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|+....                        ..|...+|                   +|++|+.++...++++|++
T Consensus        79 ~Gd~V~~~~~------------------------~~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~  115 (326)
T cd08289          79 PGDEVIVTSY------------------------DLGVSHHG-------------------GYSEYARVPAEWVVPLPKG  115 (326)
T ss_pred             CCCEEEEccc------------------------ccCCCCCC-------------------cceeEEEEcHHHeEECCCC
Confidence            9999986531                        01222234                   9999999999999999999


Q ss_pred             CCccceeeccchhHHHhhee
Q 028493          181 IPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al  200 (208)
                      +++++++.+++++.|||.++
T Consensus       116 ~~~~~a~~~~~~~~ta~~~l  135 (326)
T cd08289         116 LTLKEAMILGTAGFTAALSI  135 (326)
T ss_pred             CCHHHHhhhhhHHHHHHHHH
Confidence            99999999999999998775

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.74  E-value=6.4e-18  Score=139.31  Aligned_cols=127  Identities=34%  Similarity=0.558  Sum_probs=109.1

Q ss_pred             eEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCC
Q 028493           49 EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICS  128 (208)
Q Consensus        49 eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~  128 (208)
                      ||+|||.++++|++|++.+.|..+.....|.++|||++|+|+++|++++.|++||+|+......|++|+.|+.    .|.
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~   76 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP   76 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence            6899999999999999999887652235678999999999999999999999999999999999999999997    565


Q ss_pred             CCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchhHHHhheee
Q 028493          129 KFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       129 ~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      ....   .+....|                   +|++|+.++...++++|+++++++++.+++.+.|||+++.
T Consensus        77 ~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~  127 (271)
T cd05188          77 GGGI---LGEGLDG-------------------GFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALR  127 (271)
T ss_pred             CCCE---eccccCC-------------------cceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHH
Confidence            5442   2222334                   9999999999999999999999999999999999998863

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.74  E-value=1.2e-17  Score=142.30  Aligned_cols=130  Identities=28%  Similarity=0.372  Sum_probs=112.0

Q ss_pred             eeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493           22 RCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        22 ~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      ||||+++...+..  +++++.+.|++.++||+|||.++++|+.|.....|..+.....|.++|||++|+|+++|++++.+
T Consensus         1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~   80 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF   80 (334)
T ss_pred             CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            6899999987753  77778788888999999999999999999998887654333456789999999999999999999


Q ss_pred             CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (208)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~  179 (208)
                      ++||+|+....                              +|                   +|++|++++...++++|+
T Consensus        81 ~~Gd~V~~~~~------------------------------~g-------------------~~~~~~~v~~~~~~~ip~  111 (334)
T PTZ00354         81 KEGDRVMALLP------------------------------GG-------------------GYAEYAVAHKGHVMHIPQ  111 (334)
T ss_pred             CCCCEEEEecC------------------------------CC-------------------ceeeEEEecHHHcEeCCC
Confidence            99999975321                              13                   899999999999999999


Q ss_pred             CCCccceeeccchhHHHhhee
Q 028493          180 DIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al  200 (208)
                      +++.++++.++..+.|||+++
T Consensus       112 ~~~~~~a~~~~~~~~ta~~~l  132 (334)
T PTZ00354        112 GYTFEEAAAIPEAFLTAWQLL  132 (334)
T ss_pred             CCCHHHHHHHHHHHHHHHHHH
Confidence            999999988888999999886

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.74  E-value=2.4e-17  Score=140.83  Aligned_cols=128  Identities=27%  Similarity=0.287  Sum_probs=110.2

Q ss_pred             eeeeEEEecCCC----CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC
Q 028493           22 RCRAAISRIPGK----PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (208)
Q Consensus        22 ~~ka~~~~~~~~----~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~   97 (208)
                      .|||+++++++.    ++++++++.|.+.++||+|||.++++|++|++...|.+......|.++|||++|+|+.+|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~   80 (329)
T cd08250           1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT   80 (329)
T ss_pred             CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence            389999998765    4899999999999999999999999999999988887654346788999999999999999999


Q ss_pred             CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      .+++||+|+...                               .|                   +|++|+.++...++++
T Consensus        81 ~~~~Gd~V~~~~-------------------------------~g-------------------~~~s~~~v~~~~~~~i  110 (329)
T cd08250          81 DFKVGDAVATMS-------------------------------FG-------------------AFAEYQVVPARHAVPV  110 (329)
T ss_pred             CCCCCCEEEEec-------------------------------Cc-------------------ceeEEEEechHHeEEC
Confidence            999999998632                               13                   8999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhheee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      |++  ..+++.+++++.|||+++.
T Consensus       111 p~~--~~~~a~l~~~~~ta~~~l~  132 (329)
T cd08250         111 PEL--KPEVLPLLVSGLTASIALE  132 (329)
T ss_pred             CCC--cchhhhcccHHHHHHHHHH
Confidence            987  3466778889999998863

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.73  E-value=2.1e-17  Score=139.48  Aligned_cols=124  Identities=19%  Similarity=0.195  Sum_probs=106.2

Q ss_pred             eeeEEEecCCC-CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPGK-PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~~-~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      ||++++++.+. .+++++.+.|.++++||+||+.++++|++|.+...+.     ..|.++|||++|+|+++|+++..|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~-----~~~~~~g~e~~G~v~~~G~~v~~~~~   75 (305)
T cd08270           1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER-----PDGAVPGWDAAGVVERAAADGSGPAV   75 (305)
T ss_pred             CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC-----CCCCcccceeEEEEEEeCCCCCCCCC
Confidence            58899987541 1677788889999999999999999999999876521     23578999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      ||+|+....                              .|                   +|++|+.++...++++|+++
T Consensus        76 Gd~V~~~~~------------------------------~g-------------------~~~~~~~v~~~~~~~ip~~~  106 (305)
T cd08270          76 GARVVGLGA------------------------------MG-------------------AWAELVAVPTGWLAVLPDGV  106 (305)
T ss_pred             CCEEEEecC------------------------------Cc-------------------ceeeEEEEchHHeEECCCCC
Confidence            999975421                              13                   89999999999999999999


Q ss_pred             CccceeeccchhHHHhhee
Q 028493          182 PLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++++++.+.|||+++
T Consensus       107 ~~~~a~~~~~~~~ta~~~~  125 (305)
T cd08270         107 SFAQAATLPVAGVTALRAL  125 (305)
T ss_pred             CHHHHHHhHhHHHHHHHHH
Confidence            9999999999999999986

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.72  E-value=3.6e-17  Score=140.82  Aligned_cols=116  Identities=16%  Similarity=0.087  Sum_probs=92.5

Q ss_pred             eEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCC--CCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccC
Q 028493           35 LVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQ--PPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQG  111 (208)
Q Consensus        35 l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~--~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~  111 (208)
                      +++++++.|.| +++||||||+|++||+.|........  ....++|.++|||++|+|+++|++|++|++||+|+...  
T Consensus        23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~--  100 (345)
T cd08293          23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN--  100 (345)
T ss_pred             eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence            88899999987 49999999999999999864332111  11125678999999999999999999999999997420  


Q ss_pred             CCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccc----ee
Q 028493          112 DCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDI----AC  187 (208)
Q Consensus       112 ~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~----aa  187 (208)
                                                    +                   +|+||++++...++++|+++++++    ++
T Consensus       101 ------------------------------~-------------------~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a  131 (345)
T cd08293         101 ------------------------------W-------------------PWQTYAVLDGSSLEKVDPQLVDGHLSYFLG  131 (345)
T ss_pred             ------------------------------C-------------------CceeEEEecHHHeEEcCccccccchhHHhh
Confidence                                          2                   799999999999999999865432    34


Q ss_pred             eccchhHHHhheee
Q 028493          188 LLSCGVSTGNYRTL  201 (208)
Q Consensus       188 ~l~~~~~ta~~al~  201 (208)
                      .++..+.|||+++.
T Consensus       132 ~~~~~~~ta~~al~  145 (345)
T cd08293         132 AVGLPGLTALIGIQ  145 (345)
T ss_pred             hcCcHHHHHHHHHH
Confidence            56678899998873

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.72  E-value=5.1e-17  Score=138.59  Aligned_cols=128  Identities=27%  Similarity=0.376  Sum_probs=112.0

Q ss_pred             eeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           24 RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        24 ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      ||+++...+.+  +++++.+.|.|.++||+||+.++++|++|+..+.|.......+|.++|||++|+|+.+|+++..|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~   81 (331)
T cd08273           2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV   81 (331)
T ss_pred             eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCC
Confidence            78889887754  8888889999999999999999999999999888775443356889999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      ||+|.....                              .|                   +|++|++++...++++|+++
T Consensus        82 Gd~V~~~~~------------------------------~g-------------------~~~~~~~~~~~~~~~~p~~~  112 (331)
T cd08273          82 GDRVAALTR------------------------------VG-------------------GNAEYINLDAKYLVPVPEGV  112 (331)
T ss_pred             CCEEEEeCC------------------------------Cc-------------------ceeeEEEechHHeEECCCCC
Confidence            999986421                              13                   89999999999999999999


Q ss_pred             CccceeeccchhHHHhhee
Q 028493          182 PLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++.+++...|||+++
T Consensus       113 ~~~~a~~~~~~~~ta~~~l  131 (331)
T cd08273         113 DAAEAVCLVLNYVTAYQML  131 (331)
T ss_pred             CHHHHHhhhhHHHHHHHHH
Confidence            9999988899999999886

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.72  E-value=6.3e-17  Score=137.76  Aligned_cols=133  Identities=14%  Similarity=0.154  Sum_probs=109.6

Q ss_pred             eeeEEEecCCC--CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~--~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      |||+++++++.  .+++++.+.|+++++||+|||.++++|++|.+.+.|.+.....+|.++|||++|+|++  +++++++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~   78 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK   78 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence            78999998775  3899999999999999999999999999999988876532234577899999999999  7778899


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|+....                        +.+...+|                   +|++|+.++...++++|++
T Consensus        79 ~Gd~V~~~~~------------------------~~~~~~~g-------------------~~~~~~~v~~~~~~~lp~~  115 (324)
T cd08288          79 PGDRVVLTGW------------------------GVGERHWG-------------------GYAQRARVKADWLVPLPEG  115 (324)
T ss_pred             CCCEEEECCc------------------------cCCCCCCC-------------------cceeEEEEchHHeeeCCCC
Confidence            9999986421                        01111123                   8999999999999999999


Q ss_pred             CCccceeeccchhHHHhhee
Q 028493          181 IPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al  200 (208)
                      +++++++.+++.++|+|.++
T Consensus       116 ~~~~~~~~~~~~~~ta~~~~  135 (324)
T cd08288         116 LSARQAMAIGTAGFTAMLCV  135 (324)
T ss_pred             CCHHHHhhhhhHHHHHHHHH
Confidence            99999998888888887664

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.72  E-value=6.6e-17  Score=137.36  Aligned_cols=130  Identities=26%  Similarity=0.342  Sum_probs=108.1

Q ss_pred             eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC--CCCCCceeccceeEEEEEeCCCCCC
Q 028493           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~--~~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      |||+++++++.+  +++.+.+.|.+.++||+||+.++++|++|++...|..+.  ....|.++|||++|+|+.+|+++..
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~   80 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP   80 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence            689999876543  677777777788999999999999999999988876532  2345788999999999999999999


Q ss_pred             CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (208)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip  178 (208)
                      +++||+|+....                            ...|                   +|++|+.++...++++|
T Consensus        81 ~~~Gd~V~~~~~----------------------------~~~g-------------------~~~~~~~v~~~~~~~lp  113 (324)
T cd08244          81 AWLGRRVVAHTG----------------------------RAGG-------------------GYAELAVADVDSLHPVP  113 (324)
T ss_pred             CCCCCEEEEccC----------------------------CCCc-------------------eeeEEEEEchHHeEeCC
Confidence            999999986421                            0123                   89999999999999999


Q ss_pred             CCCCccceeeccchhHHHhhe
Q 028493          179 PDIPLDIACLLSCGVSTGNYR  199 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~a  199 (208)
                      +++++++++.+++.+.|||..
T Consensus       114 ~~~~~~~a~~~~~~~~ta~~~  134 (324)
T cd08244         114 DGLDLEAAVAVVHDGRTALGL  134 (324)
T ss_pred             CCCCHHHHhhhcchHHHHHHH
Confidence            999999998888888998643

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.71  E-value=4.4e-17  Score=139.42  Aligned_cols=132  Identities=26%  Similarity=0.264  Sum_probs=110.5

Q ss_pred             eeeEEEecCCCC-----eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC
Q 028493           23 CRAAISRIPGKP-----LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (208)
Q Consensus        23 ~ka~~~~~~~~~-----l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~   97 (208)
                      |||+++.++++.     ++.++++.|.+.++||+||+.++++|++|++.+.+..+. .+.|.++|||++|+|+.+|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~v~   79 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPV-PGQPKILGWDASGVVEAVGSEVT   79 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCC-CCCCcccccceEEEEEEcCCCCC
Confidence            589999988763     566677888889999999999999999999988776542 34677899999999999999999


Q ss_pred             CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      .|++||+|+....                           ....|                   +|++|+.++...++++
T Consensus        80 ~~~~Gd~V~~~~~---------------------------~~~~g-------------------~~~~~~~v~~~~~~~i  113 (336)
T cd08252          80 LFKVGDEVYYAGD---------------------------ITRPG-------------------SNAEYQLVDERIVGHK  113 (336)
T ss_pred             CCCCCCEEEEcCC---------------------------CCCCc-------------------cceEEEEEchHHeeeC
Confidence            9999999975310                           00123                   8999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhheee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      |++++.++++.+++.+.|||+++.
T Consensus       114 p~~~~~~~~~~~~~~~~ta~~~l~  137 (336)
T cd08252         114 PKSLSFAEAAALPLTSLTAWEALF  137 (336)
T ss_pred             CCCCCHHHhhhhhhHHHHHHHHHH
Confidence            999999999989999999998863

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.71  E-value=7.6e-17  Score=139.38  Aligned_cols=133  Identities=23%  Similarity=0.343  Sum_probs=108.6

Q ss_pred             eeEEEecCCCCeEEEEeecCCC---CCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC-CC
Q 028493           24 RAAISRIPGKPLVMEEIEVDPP---KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE-EV   99 (208)
Q Consensus        24 ka~~~~~~~~~l~~~~~~~p~~---~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~-~~   99 (208)
                      |++++.++++++++++++.|.|   +++||+||+.++++|++|+..+.+........|.++|||++|+|+++|++++ +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~   81 (352)
T cd08247           2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW   81 (352)
T ss_pred             ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence            6899999888888888877766   8999999999999999999877543221112377899999999999999998 89


Q ss_pred             CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC----cEE
Q 028493          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT----HVV  175 (208)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~----~v~  175 (208)
                      ++||+|+......|                         ...|                   +|++|++++..    .++
T Consensus        82 ~~Gd~V~~~~~~~~-------------------------~~~g-------------------~~~~~~~v~~~~~~~~~~  117 (352)
T cd08247          82 KVGDEVCGIYPHPY-------------------------GGQG-------------------TLSQYLLVDPKKDKKSIT  117 (352)
T ss_pred             CCCCEEEEeecCCC-------------------------CCCc-------------------eeeEEEEEccccccceeE
Confidence            99999986532110                         0123                   89999999987    789


Q ss_pred             EcCCCCCccceeeccchhHHHhhee
Q 028493          176 KITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       176 ~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++|+++++++++.++++..|||+++
T Consensus       118 ~lP~~l~~~~aa~~~~~~~ta~~~l  142 (352)
T cd08247         118 RKPENISLEEAAAWPLVLGTAYQIL  142 (352)
T ss_pred             ECCCCCCHHHHHHhHHHHHHHHHHH
Confidence            9999999999999999999999886

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.71  E-value=1.2e-16  Score=135.32  Aligned_cols=131  Identities=33%  Similarity=0.445  Sum_probs=112.3

Q ss_pred             eeeEEEecCC--CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPG--KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~--~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      |||+++.+++  +.+++++.+.|+++++||+|||.++++|++|++...+.... ...|.++|||++|+|+.+|++++.++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~~~~~~   79 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA-WSYPHVPGVDGAGVVVAVGAKVTGWK   79 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCcccccceEEEEEEeCCCCCcCC
Confidence            7999999988  35999999999999999999999999999999887776432 23367899999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|++....                           ...|                   +|++|+.++...++++|++
T Consensus        80 ~Gd~V~~~~~~---------------------------~~~~-------------------~~~s~~~~~~~~~~~ip~~  113 (325)
T cd08271          80 VGDRVAYHASL---------------------------ARGG-------------------SFAEYTVVDARAVLPLPDS  113 (325)
T ss_pred             CCCEEEeccCC---------------------------CCCc-------------------cceeEEEeCHHHeEECCCC
Confidence            99999864310                           0123                   8999999999999999999


Q ss_pred             CCccceeeccchhHHHhhee
Q 028493          181 IPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++..+++.+.+...++|+++
T Consensus       114 ~~~~~~a~~~~~~~~a~~~~  133 (325)
T cd08271         114 LSFEEAAALPCAGLTAYQAL  133 (325)
T ss_pred             CCHHHHHhhhhhHHHHHHHH
Confidence            99999888888999999886

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.70  E-value=1e-16  Score=134.80  Aligned_cols=129  Identities=29%  Similarity=0.421  Sum_probs=110.6

Q ss_pred             eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      ||++++.+.+.+  +++++.+.|.+.++||+||+.++++|++|++...+.++....+|.++|||++|+|+.+|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK   80 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence            699999876543  778888877788999999999999999999988776544345678999999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|+....                              +|                   +|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~~------------------------------~g-------------------~~~~~~~~~~~~~~~~p~~  111 (323)
T cd05276          81 VGDRVCALLA------------------------------GG-------------------GYAEYVVVPAGQLLPVPEG  111 (323)
T ss_pred             CCCEEEEecC------------------------------CC-------------------ceeEEEEcCHHHhccCCCC
Confidence            9999986421                              13                   8999999999999999999


Q ss_pred             CCccceeeccchhHHHhhee
Q 028493          181 IPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al  200 (208)
                      +++.+++.++....++|+++
T Consensus       112 ~~~~~~~~l~~~~~~a~~~~  131 (323)
T cd05276         112 LSLVEAAALPEVFFTAWQNL  131 (323)
T ss_pred             CCHHHHhhchhHHHHHHHHH
Confidence            99999988888999999875

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.70  E-value=1.5e-16  Score=134.08  Aligned_cols=135  Identities=26%  Similarity=0.412  Sum_probs=112.9

Q ss_pred             eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      ||+++++.++.+  +++.+.+.|.+.++||+||+.++++|++|++...|........|.++|||++|+|+.+|+++.+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~   80 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK   80 (325)
T ss_pred             CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence            588888876543  888888888899999999999999999999988776544345788999999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|+.....                        .+ ...|                   ++++|+.++...++++|++
T Consensus        81 ~Gd~v~~~~~~------------------------~~-~~~g-------------------~~~~~~~~~~~~~~~ip~~  116 (325)
T cd08253          81 VGDRVWLTNLG------------------------WG-RRQG-------------------TAAEYVVVPADQLVPLPDG  116 (325)
T ss_pred             CCCEEEEeccc------------------------cC-CCCc-------------------ceeeEEEecHHHcEeCCCC
Confidence            99999875320                        00 0123                   8999999999999999999


Q ss_pred             CCccceeeccchhHHHhheee
Q 028493          181 IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++.+++...+||+++.
T Consensus       117 ~~~~~aa~~~~~~~~a~~~l~  137 (325)
T cd08253         117 VSFEQGAALGIPALTAYRALF  137 (325)
T ss_pred             CCHHHHhhhhhHHHHHHHHHH
Confidence            999999999889999998763

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.70  E-value=6.4e-17  Score=139.34  Aligned_cols=128  Identities=23%  Similarity=0.276  Sum_probs=101.8

Q ss_pred             eeeeEEEecCCC-CeEEEEeec----CCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccce--eEEEEEeCC
Q 028493           22 RCRAAISRIPGK-PLVMEEIEV----DPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEA--VGVVESVGG   94 (208)
Q Consensus        22 ~~ka~~~~~~~~-~l~~~~~~~----p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~--~G~Vv~vG~   94 (208)
                      .+|++....+.. .|++++.+.    |+|+++||||||++++||+.|.+...|.+......|.++|+++  .|++..+|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~   86 (338)
T cd08295           7 ILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDS   86 (338)
T ss_pred             EEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEec
Confidence            366777655543 289988877    7899999999999999999999988885432124577889865  455555889


Q ss_pred             CCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEec-Cc
Q 028493           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV-TH  173 (208)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~-~~  173 (208)
                      ++++|++||+|+..                                 |                   +|+||++++. ..
T Consensus        87 ~v~~~~vGd~V~~~---------------------------------g-------------------~~aey~~v~~~~~  114 (338)
T cd08295          87 GNPDFKVGDLVWGF---------------------------------T-------------------GWEEYSLIPRGQD  114 (338)
T ss_pred             CCCCCCCCCEEEec---------------------------------C-------------------CceeEEEecchhc
Confidence            99999999999632                                 2                   8999999999 78


Q ss_pred             EEEcC-CCCCcc-ceeeccchhHHHhheee
Q 028493          174 VVKIT-PDIPLD-IACLLSCGVSTGNYRTL  201 (208)
Q Consensus       174 v~~ip-~~~~~~-~aa~l~~~~~ta~~al~  201 (208)
                      ++++| ++++++ +++++++++.|||+++.
T Consensus       115 ~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~  144 (338)
T cd08295         115 LRKIDHTDVPLSYYLGLLGMPGLTAYAGFY  144 (338)
T ss_pred             eeecCCCCCCHHHHHHhcccHHHHHHHHHH
Confidence            99995 678876 78888999999999974

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.70  E-value=1.6e-16  Score=134.37  Aligned_cols=133  Identities=31%  Similarity=0.418  Sum_probs=109.3

Q ss_pred             eeeEEEecCCC--CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~--~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      ||++++...+.  .+++.+.+.|.++++||+||+.++++|++|++...+..+. ...|.++|||++|+|+++|.  ..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~vG~--~~~~   77 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPS-VKFPRVLGIEAVGEVEEAPG--GTFT   77 (320)
T ss_pred             CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCccccceeEEEEEEecC--CCCC
Confidence            68899987664  2677788887889999999999999999999988876543 35578999999999999995  5799


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|++....                        .+....|                   +|++|+.++...++++|++
T Consensus        78 ~Gd~V~~~~~~------------------------~~~~~~g-------------------~~~~~~~~~~~~~~~ip~~  114 (320)
T cd08243          78 PGQRVATAMGG------------------------MGRTFDG-------------------SYAEYTLVPNEQVYAIDSD  114 (320)
T ss_pred             CCCEEEEecCC------------------------CCCCCCc-------------------ccceEEEcCHHHcEeCCCC
Confidence            99999875320                        1111223                   8999999999999999999


Q ss_pred             CCccceeeccchhHHHhheee
Q 028493          181 IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++.+++++.|||+++.
T Consensus       115 ~~~~~aa~~~~~~~ta~~~l~  135 (320)
T cd08243         115 LSWAELAALPETYYTAWGSLF  135 (320)
T ss_pred             CCHHHHHhcchHHHHHHHHHH
Confidence            999999999999999998863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.69  E-value=1.8e-16  Score=134.01  Aligned_cols=134  Identities=26%  Similarity=0.355  Sum_probs=111.6

Q ss_pred             eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      |||+++.+++.+  +++++.+.|++.++||+|||.++++|++|.+...+........|.++|||++|+|+.+|++++.|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR   80 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence            689999887764  788888888889999999999999999999988776543334578899999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|+.....                        .+ ...                   |+|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~~~------------------------~~-~~~-------------------g~~~~~~~v~~~~~~~~p~~  116 (326)
T cd08272          81 VGDEVYGCAGG------------------------LG-GLQ-------------------GSLAEYAVVDARLLALKPAN  116 (326)
T ss_pred             CCCEEEEccCC------------------------cC-CCC-------------------CceeEEEEecHHHcccCCCC
Confidence            99999864210                        00 012                   28999999999999999999


Q ss_pred             CCccceeeccchhHHHhhee
Q 028493          181 IPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al  200 (208)
                      +++..++.++....+||+++
T Consensus       117 ~~~~~~~~~~~~~~~a~~~l  136 (326)
T cd08272         117 LSMREAAALPLVGITAWEGL  136 (326)
T ss_pred             CCHHHHHHhHHHHHHHHHHH
Confidence            99999888888899999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.67  E-value=4.8e-16  Score=131.29  Aligned_cols=134  Identities=33%  Similarity=0.410  Sum_probs=110.7

Q ss_pred             eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      ||++.+...+.+  +++++.+.|.+++++|+|+|.++++|+.|.+...+........|.++|||++|+|+.+|+++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA   80 (328)
T ss_pred             CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence            688888875542  777788878889999999999999999999888776544334578899999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|+.....                         +....|                   ++++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~~~-------------------------~~~~~g-------------------~~~~~~~~~~~~~~~~p~~  116 (328)
T cd08268          81 VGDRVSVIPAA-------------------------DLGQYG-------------------TYAEYALVPAAAVVKLPDG  116 (328)
T ss_pred             CCCEEEecccc-------------------------ccCCCc-------------------cceEEEEechHhcEeCCCC
Confidence            99999875321                         011123                   8999999999999999999


Q ss_pred             CCccceeeccchhHHHhhee
Q 028493          181 IPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++.++++.+++...++|.++
T Consensus       117 ~~~~~~~~~~~~~~~a~~~~  136 (328)
T cd08268         117 LSFVEAAALWMQYLTAYGAL  136 (328)
T ss_pred             CCHHHHHHhhhHHHHHHHHH
Confidence            99989888888999999876

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.66  E-value=5.3e-16  Score=132.34  Aligned_cols=121  Identities=22%  Similarity=0.246  Sum_probs=96.7

Q ss_pred             eeeeEEEecC--CCC----eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCC
Q 028493           22 RCRAAISRIP--GKP----LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (208)
Q Consensus        22 ~~ka~~~~~~--~~~----l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~   95 (208)
                      .||+|++.+.  +.+    |++++.+.|+|+++||+|||++++||+.|.+...+  .  .+.|.++|+|++|+|++   .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~--~--~~~p~v~G~e~~G~V~~---~   74 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR--L--NEGDTMIGTQVAKVIES---K   74 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc--C--CCCCcEecceEEEEEec---C
Confidence            4899999883  332    88899999999999999999999999987653221  1  14578999999999985   4


Q ss_pred             CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC---
Q 028493           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT---  172 (208)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~---  172 (208)
                      ++.|++||+|+..                                 +                   +|++|..++..   
T Consensus        75 ~~~~~~Gd~V~~~---------------------------------~-------------------~~~~~~~~~~~~~~  102 (329)
T cd08294          75 NSKFPVGTIVVAS---------------------------------F-------------------GWRTHTVSDGKDQP  102 (329)
T ss_pred             CCCCCCCCEEEee---------------------------------C-------------------CeeeEEEECCcccc
Confidence            5689999999742                                 1                   68999999999   


Q ss_pred             cEEEcCCCCCc-----cceeeccchhHHHhheee
Q 028493          173 HVVKITPDIPL-----DIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       173 ~v~~ip~~~~~-----~~aa~l~~~~~ta~~al~  201 (208)
                      .++++|+++++     ..++++++.++|||+++.
T Consensus       103 ~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~  136 (329)
T cd08294         103 DLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLL  136 (329)
T ss_pred             ceEECCccccccCChHHHHHhcccHHHHHHHHHH
Confidence            99999999872     223457788999999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.64  E-value=1.2e-15  Score=129.54  Aligned_cols=117  Identities=27%  Similarity=0.439  Sum_probs=101.7

Q ss_pred             eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCC
Q 028493           35 LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCG  114 (208)
Q Consensus        35 l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~  114 (208)
                      +++++.+.|+++++||+|||.++++|+.|.+.+.+.......+|.++|||++|+|+.+|++++++++||+|+....    
T Consensus        14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~----   89 (323)
T cd05282          14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG----   89 (323)
T ss_pred             EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence            6667888888999999999999999999999887765443356789999999999999999999999999986431    


Q ss_pred             CCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchhH
Q 028493          115 ECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS  194 (208)
Q Consensus       115 ~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~  194 (208)
                                                .|                   +|++|+.++...++++|+++++++++.+++...
T Consensus        90 --------------------------~g-------------------~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~  124 (323)
T cd05282          90 --------------------------EG-------------------TWQEYVVAPADDLIPVPDSISDEQAAMLYINPL  124 (323)
T ss_pred             --------------------------CC-------------------cceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence                                      13                   899999999999999999999999888888889


Q ss_pred             HHhhee
Q 028493          195 TGNYRT  200 (208)
Q Consensus       195 ta~~al  200 (208)
                      |||+++
T Consensus       125 ta~~~~  130 (323)
T cd05282         125 TAWLML  130 (323)
T ss_pred             HHHHHH
Confidence            999886

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.63  E-value=1.6e-15  Score=127.14  Aligned_cols=132  Identities=25%  Similarity=0.348  Sum_probs=108.9

Q ss_pred             eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCC--CCCCCCceeccceeEEEEEeCCCCCC
Q 028493           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP--PMAVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~--~~~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      ||+++++.++..  +++++.+.|.++++||+|||.++++|++|++.+.|...  .....|.++|||++|+|+.+|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~   80 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG   80 (309)
T ss_pred             CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence            688999877653  56677777788999999999999999999998877642  11345789999999999999999999


Q ss_pred             CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (208)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip  178 (208)
                      +++||+|+.....                           ...|                   +|++|+.++...++++|
T Consensus        81 ~~~G~~V~~~~~~---------------------------~~~g-------------------~~~~~~~~~~~~~~~~p  114 (309)
T cd05289          81 FKVGDEVFGMTPF---------------------------TRGG-------------------AYAEYVVVPADELALKP  114 (309)
T ss_pred             CCCCCEEEEccCC---------------------------CCCC-------------------cceeEEEecHHHhccCC
Confidence            9999999864310                           0123                   89999999999999999


Q ss_pred             CCCCccceeeccchhHHHhhee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      +++++..++.+++...++|+++
T Consensus       115 ~~~~~~~~~~~~~~~~~a~~~~  136 (309)
T cd05289         115 ANLSFEEAAALPLAGLTAWQAL  136 (309)
T ss_pred             CCCCHHHHHhhhHHHHHHHHHH
Confidence            9999988888888888998875

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.63  E-value=1.6e-15  Score=129.89  Aligned_cols=108  Identities=21%  Similarity=0.285  Sum_probs=89.5

Q ss_pred             eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCC
Q 028493           35 LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCG  114 (208)
Q Consensus        35 l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~  114 (208)
                      |++++++.|.|++|||||||.++++|+.+..   |.+.. ...|.++|.|++|+|+++|+   .|++||+|+..      
T Consensus        19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~-~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~------   85 (325)
T TIGR02825        19 FELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRL-KEGDTMMGQQVARVVESKNV---ALPKGTIVLAS------   85 (325)
T ss_pred             eEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcC-CCCCcEecceEEEEEEeCCC---CCCCCCEEEEe------
Confidence            8899999999999999999999999997654   33322 23468999999999999874   59999999752      


Q ss_pred             CCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc----CCCCCccce-eec
Q 028493          115 ECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI----TPDIPLDIA-CLL  189 (208)
Q Consensus       115 ~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i----p~~~~~~~a-a~l  189 (208)
                                                 +                   +|++|++++...+.++    |++++++++ +++
T Consensus        86 ---------------------------~-------------------~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l  119 (325)
T TIGR02825        86 ---------------------------P-------------------GWTSHSISDGKDLEKLLTEWPDTLPLSLALGTV  119 (325)
T ss_pred             ---------------------------c-------------------CceeeEEechhheEEccccccCCCCHHHHHHhc
Confidence                                       1                   6889999998887777    889998887 678


Q ss_pred             cchhHHHhheee
Q 028493          190 SCGVSTGNYRTL  201 (208)
Q Consensus       190 ~~~~~ta~~al~  201 (208)
                      ++.+.|||+++.
T Consensus       120 ~~~~~TA~~~l~  131 (325)
T TIGR02825       120 GMPGLTAYFGLL  131 (325)
T ss_pred             ccHHHHHHHHHH
Confidence            889999999873

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.63  E-value=2.8e-15  Score=130.18  Aligned_cols=128  Identities=20%  Similarity=0.234  Sum_probs=97.3

Q ss_pred             eeeeeEEEecCCC------CeEEEE---eecCC-CCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceecc--ceeEE
Q 028493           21 IRCRAAISRIPGK------PLVMEE---IEVDP-PKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH--EAVGV   88 (208)
Q Consensus        21 ~~~ka~~~~~~~~------~l~~~~---~~~p~-~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~--e~~G~   88 (208)
                      .+.|.+++...-+      .|++++   ++.|. +++|||||||.++++|+.|.....+.... ...|.++|+  |++|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~-~~~p~~~G~~~~~~G~   85 (348)
T PLN03154          7 VENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDS-YLPPFVPGQRIEGFGV   85 (348)
T ss_pred             ccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCC-CCCCcCCCCeeEeeEE
Confidence            3457788854321      288876   35553 47999999999999999987654332221 235788998  88999


Q ss_pred             EEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEE
Q 028493           89 VESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV  168 (208)
Q Consensus        89 Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~  168 (208)
                      |..+|+++++|++||+|+..                                 |                   +|+||.+
T Consensus        86 v~~vg~~v~~~~~Gd~V~~~---------------------------------~-------------------~~aey~~  113 (348)
T PLN03154         86 SKVVDSDDPNFKPGDLISGI---------------------------------T-------------------GWEEYSL  113 (348)
T ss_pred             EEEEecCCCCCCCCCEEEec---------------------------------C-------------------CcEEEEE
Confidence            99999999999999999642                                 2                   7999999


Q ss_pred             EecCc--EE--EcCCCCCcc-ceeeccchhHHHhheee
Q 028493          169 VDVTH--VV--KITPDIPLD-IACLLSCGVSTGNYRTL  201 (208)
Q Consensus       169 v~~~~--v~--~ip~~~~~~-~aa~l~~~~~ta~~al~  201 (208)
                      ++...  ++  ++|++++++ +++.+++++.|||+++.
T Consensus       114 v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~  151 (348)
T PLN03154        114 IRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFY  151 (348)
T ss_pred             EeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHH
Confidence            98743  54  458999986 67788999999999874

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.62  E-value=4.2e-15  Score=126.49  Aligned_cols=128  Identities=25%  Similarity=0.375  Sum_probs=107.4

Q ss_pred             eeEEEecCCC--CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           24 RAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        24 ka~~~~~~~~--~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      |++++...+.  .+++++.+.|++.++||+||+.++++|++|.+.+.|.+......|.++|||++|+|+.+|++++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~   80 (337)
T cd08275           1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV   80 (337)
T ss_pred             CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence            4666665553  37777877788899999999999999999999888765432345778999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      ||+|+....                              .|                   +|++|..++...++++|+++
T Consensus        81 G~~V~~~~~------------------------------~~-------------------~~~~~~~~~~~~~~~ip~~~  111 (337)
T cd08275          81 GDRVMGLTR------------------------------FG-------------------GYAEVVNVPADQVFPLPDGM  111 (337)
T ss_pred             CCEEEEecC------------------------------CC-------------------eeeeEEEecHHHeEECCCCC
Confidence            999986421                              12                   89999999999999999999


Q ss_pred             CccceeeccchhHHHhhee
Q 028493          182 PLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++.+.+...++|+++
T Consensus       112 ~~~~~~~~~~~~~~a~~~~  130 (337)
T cd08275         112 SFEEAAAFPVNYLTAYYAL  130 (337)
T ss_pred             CHHHHhhhhHHHHHHHHHH
Confidence            9999888888999999886

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.61  E-value=6.1e-15  Score=124.42  Aligned_cols=129  Identities=30%  Similarity=0.404  Sum_probs=108.0

Q ss_pred             eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      |||+.+...+.+  +++++.+.+.++++||+|||.++++|++|.+...+.+.....+|.++|||++|+|+.+|+++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK   80 (325)
T ss_pred             CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence            578888775544  667777777788999999999999999999888776543234578999999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|+....                              +|                   +|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~~------------------------------~~-------------------~~~~~~~~~~~~~~~ip~~  111 (325)
T TIGR02824        81 VGDRVCALVA------------------------------GG-------------------GYAEYVAVPAGQVLPVPEG  111 (325)
T ss_pred             CCCEEEEccC------------------------------CC-------------------cceeEEEecHHHcEeCCCC
Confidence            9999986321                              13                   8999999999999999999


Q ss_pred             CCccceeeccchhHHHhhee
Q 028493          181 IPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al  200 (208)
                      +++.+++.++....|+|.++
T Consensus       112 ~~~~~~~~~~~~~~ta~~~~  131 (325)
T TIGR02824       112 LSLVEAAALPETFFTVWSNL  131 (325)
T ss_pred             CCHHHHHhhhHHHHHHHHHH
Confidence            99988888888999999875

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.59  E-value=1e-14  Score=122.49  Aligned_cols=127  Identities=31%  Similarity=0.424  Sum_probs=105.7

Q ss_pred             eeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           24 RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        24 ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      ||+.+..++.+  +.+.+.+.+.+.++||+|||.++++|++|++...+..+.  .+|.++|||++|+|+.+|++++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~   78 (320)
T cd05286           1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL--PLPFVLGVEGAGVVEAVGPGVTGFKV   78 (320)
T ss_pred             CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC--CCCccCCcceeEEEEEECCCCCCCCC
Confidence            46666655543  666677777788999999999999999999988876544  45778999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      ||+|+...                              ..|                   +|++|+.++.+.++++|+++
T Consensus        79 G~~V~~~~------------------------------~~g-------------------~~~~~~~~~~~~~~~~p~~~  109 (320)
T cd05286          79 GDRVAYAG------------------------------PPG-------------------AYAEYRVVPASRLVKLPDGI  109 (320)
T ss_pred             CCEEEEec------------------------------CCC-------------------ceeEEEEecHHHceeCCCCC
Confidence            99998531                              013                   89999999999999999999


Q ss_pred             CccceeeccchhHHHhheee
Q 028493          182 PLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~al~  201 (208)
                      +..+++.+.....++|+++.
T Consensus       110 ~~~~~~~~~~~~~~a~~~l~  129 (320)
T cd05286         110 SDETAAALLLQGLTAHYLLR  129 (320)
T ss_pred             CHHHHhhccchHHHHHHHHH
Confidence            99998888888899988763

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.59  E-value=7.8e-15  Score=123.98  Aligned_cols=119  Identities=25%  Similarity=0.361  Sum_probs=95.6

Q ss_pred             ecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhh-cCCCCCC-CCCCceeccceeEEEEEeCCCCCCCCCCCEEe
Q 028493           29 RIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW-RSTQPPM-AVFPRILGHEAVGVVESVGGGVEEVREGDLVL  106 (208)
Q Consensus        29 ~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~-~g~~~~~-~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~  106 (208)
                      ++++. |++++++.|++.++||+||+.++++|++|.+.+ .|..+.. ...|.++|+|++|+|+.+|++++.+++||+|+
T Consensus         2 ~~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   80 (312)
T cd08269           2 TGPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVA   80 (312)
T ss_pred             CCCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEE
Confidence            34454 999999999999999999999999999999887 6654321 12477899999999999999999999999998


Q ss_pred             eeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccce
Q 028493          107 PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA  186 (208)
Q Consensus       107 ~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~a  186 (208)
                      ...                               .|                   +|++|+.++.+.++++|+++  ..+
T Consensus        81 ~~~-------------------------------~g-------------------~~~~~~~v~~~~~~~lP~~~--~~~  108 (312)
T cd08269          81 GLS-------------------------------GG-------------------AFAEYDLADADHAVPLPSLL--DGQ  108 (312)
T ss_pred             Eec-------------------------------CC-------------------cceeeEEEchhheEECCCch--hhh
Confidence            642                               13                   89999999999999999988  222


Q ss_pred             eeccchhHHHhhee
Q 028493          187 CLLSCGVSTGNYRT  200 (208)
Q Consensus       187 a~l~~~~~ta~~al  200 (208)
                      +....+++++|+++
T Consensus       109 ~~~~~~~~~a~~~~  122 (312)
T cd08269         109 AFPGEPLGCALNVF  122 (312)
T ss_pred             HHhhhhHHHHHHHH
Confidence            22235677888765

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08251 polyketide_synthase polyketide synthase

Probab=99.58  E-value=7.8e-15  Score=122.73  Aligned_cols=112  Identities=31%  Similarity=0.397  Sum_probs=97.2

Q ss_pred             cCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccC
Q 028493           42 VDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKS  121 (208)
Q Consensus        42 ~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~  121 (208)
                      .|++.++||+||+.++++|++|++...+.++....+|.++|+|++|+|+++|++++++++||+|+....           
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-----------   70 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG-----------   70 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC-----------
Confidence            577889999999999999999999888765443456889999999999999999999999999986431           


Q ss_pred             CCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493          122 PKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       122 g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                                       ...|                   +|++|+.++...++++|++++.++++.++....|||+++
T Consensus        71 -----------------~~~g-------------------~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l  113 (303)
T cd08251          71 -----------------ESMG-------------------GHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF  113 (303)
T ss_pred             -----------------CCCc-------------------ceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH
Confidence                             0123                   899999999999999999999999999988999999886

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.56  E-value=1.4e-14  Score=122.36  Aligned_cols=119  Identities=26%  Similarity=0.349  Sum_probs=100.8

Q ss_pred             EEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC--CCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCC
Q 028493           36 VMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDC  113 (208)
Q Consensus        36 ~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~--~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c  113 (208)
                      ++++.+.|.++++||+|++.++++|++|.+.+.|....  ....|..+|||++|+|+++|+++.++++||+|+.....  
T Consensus        15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~--   92 (319)
T cd08267          15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP--   92 (319)
T ss_pred             ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC--
Confidence            77788889999999999999999999999988776521  12346789999999999999999999999999865320  


Q ss_pred             CCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchh
Q 028493          114 GECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGV  193 (208)
Q Consensus       114 ~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~  193 (208)
                                               ...|                   +|++|..++...++++|+++++++++.+++.+
T Consensus        93 -------------------------~~~g-------------------~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~  128 (319)
T cd08267          93 -------------------------KGGG-------------------ALAEYVVAPESGLAKKPEGVSFEEAAALPVAG  128 (319)
T ss_pred             -------------------------CCCc-------------------eeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence                                     0113                   89999999999999999999999988888899


Q ss_pred             HHHhhee
Q 028493          194 STGNYRT  200 (208)
Q Consensus       194 ~ta~~al  200 (208)
                      .+||+++
T Consensus       129 ~~a~~~~  135 (319)
T cd08267         129 LTALQAL  135 (319)
T ss_pred             HHHHHHH
Confidence            9999886

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.55  E-value=4e-14  Score=119.12  Aligned_cols=129  Identities=29%  Similarity=0.455  Sum_probs=105.2

Q ss_pred             eeeEEEecCCCC--eEEEEeecCCCC-CCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493           23 CRAAISRIPGKP--LVMEEIEVDPPK-AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        23 ~ka~~~~~~~~~--l~~~~~~~p~~~-~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      |||+++...+.+  +++.+.+ |.+. ++|++||+.++++|++|++.+.|.+......|.++|||++|+|+.+|++++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~   79 (323)
T cd08241           1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF   79 (323)
T ss_pred             CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence            688888754433  7777777 6666 49999999999999999998877654323446789999999999999999999


Q ss_pred             CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (208)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~  179 (208)
                      ++||+|+....                              .|                   ++++|+.++...++++|+
T Consensus        80 ~~G~~V~~~~~------------------------------~~-------------------~~~~~~~~~~~~~~~ip~  110 (323)
T cd08241          80 KVGDRVVALTG------------------------------QG-------------------GFAEEVVVPAAAVFPLPD  110 (323)
T ss_pred             CCCCEEEEecC------------------------------Cc-------------------eeEEEEEcCHHHceeCCC
Confidence            99999986420                              13                   899999999999999999


Q ss_pred             CCCccceeeccchhHHHhheee
Q 028493          180 DIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++..+++.+.....+||.++.
T Consensus       111 ~~~~~~~~~~~~~~~~a~~~~~  132 (323)
T cd08241         111 GLSFEEAAALPVTYGTAYHALV  132 (323)
T ss_pred             CCCHHHHhhhhhHHHHHHHHHH
Confidence            9998888878888888888753

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.49  E-value=1.5e-13  Score=117.13  Aligned_cols=124  Identities=20%  Similarity=0.197  Sum_probs=96.2

Q ss_pred             eeEEEecCCC------CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC--CCCCCceeccceeEEEEEeCCC
Q 028493           24 RAAISRIPGK------PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGG   95 (208)
Q Consensus        24 ka~~~~~~~~------~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~--~~~~p~~~G~e~~G~Vv~vG~~   95 (208)
                      |+|.+....+      .+++++++.|++.++||+||+.++++|+.|.....+....  +...+.++|+|++|+|+++|+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~   82 (329)
T cd05288           3 RQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP   82 (329)
T ss_pred             cEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC
Confidence            5666654331      2899999999999999999999999999886555543211  1123467899999999999964


Q ss_pred             CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEec-CcE
Q 028493           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV-THV  174 (208)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~-~~v  174 (208)
                        .+++||+|+..                                 +                   +|++|+.++. ..+
T Consensus        83 --~~~~Gd~V~~~---------------------------------~-------------------~~~~~~~v~~~~~~  108 (329)
T cd05288          83 --DFKVGDLVSGF---------------------------------L-------------------GWQEYAVVDGASGL  108 (329)
T ss_pred             --CCCCCCEEecc---------------------------------c-------------------ceEEEEEecchhhc
Confidence              79999999742                                 1                   7999999999 999


Q ss_pred             EEcCCCCC--ccceee-ccchhHHHhheee
Q 028493          175 VKITPDIP--LDIACL-LSCGVSTGNYRTL  201 (208)
Q Consensus       175 ~~ip~~~~--~~~aa~-l~~~~~ta~~al~  201 (208)
                      +++|++++  +.+++. +++...|||+++.
T Consensus       109 ~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~  138 (329)
T cd05288         109 RKLDPSLGLPLSAYLGVLGMTGLTAYFGLT  138 (329)
T ss_pred             EECCcccCCCHHHHHHhcccHHHHHHHHHH
Confidence            99999985  444444 7889999999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.42  E-value=7.7e-13  Score=115.00  Aligned_cols=120  Identities=28%  Similarity=0.410  Sum_probs=93.4

Q ss_pred             eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCC---CCCceeccceeEEEEEeCCC----CCCCCCCCEEee
Q 028493           35 LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA---VFPRILGHEAVGVVESVGGG----VEEVREGDLVLP  107 (208)
Q Consensus        35 l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~---~~p~~~G~e~~G~Vv~vG~~----v~~~~vGd~V~~  107 (208)
                      ...++.++|.|++++++|++.++++|+.|.....|.+....   .+|.+++.++.|++..++..    +..+..||.+..
T Consensus        20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~   99 (347)
T KOG1198|consen   20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA   99 (347)
T ss_pred             EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence            44478899999999999999999999999999999887644   57766666666664443332    333445544432


Q ss_pred             eccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCcccee
Q 028493          108 VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIAC  187 (208)
Q Consensus       108 ~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa  187 (208)
                      ..                              .                   .|+|+||.++|...++++|++++++++|
T Consensus       100 ~~------------------------------~-------------------~g~~aey~v~p~~~~~~~P~~l~~~~aa  130 (347)
T KOG1198|consen  100 FL------------------------------S-------------------SGGLAEYVVVPEKLLVKIPESLSFEEAA  130 (347)
T ss_pred             cc------------------------------C-------------------CCceeeEEEcchhhccCCCCccChhhhh
Confidence            11                              1                   2399999999999999999999999999


Q ss_pred             eccchhHHHhheeeee
Q 028493          188 LLSCGVSTGNYRTLVD  203 (208)
Q Consensus       188 ~l~~~~~ta~~al~~~  203 (208)
                      +++.++.|||.+|+..
T Consensus       131 ~~p~~~~tA~~al~~~  146 (347)
T KOG1198|consen  131 ALPLAALTALSALFQL  146 (347)
T ss_pred             cCchHHHHHHHHHHhc
Confidence            9999999999998654

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.41  E-value=7.6e-13  Score=109.35  Aligned_cols=100  Identities=30%  Similarity=0.393  Sum_probs=88.3

Q ss_pred             CeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCC
Q 028493           48 GEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC  127 (208)
Q Consensus        48 ~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c  127 (208)
                      +||+||+.++++|++|++...|..+   .+|.++|||++|+|+++|++++.+++||+|+...                  
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~~---~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~------------------   59 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLLP---GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA------------------   59 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCCC---CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe------------------
Confidence            5899999999999999998887642   3578999999999999999999999999998642                  


Q ss_pred             CCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493          128 SKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       128 ~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                                   .|                   +|++|+.++...++++|+++++.+++.+++...|+|.++
T Consensus        60 -------------~g-------------------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~  100 (293)
T cd05195          60 -------------PG-------------------AFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYAL  100 (293)
T ss_pred             -------------cC-------------------cccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHH
Confidence                         13                   899999999999999999999999988888999998876

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>smart00829 PKS_ER Enoylreductase

Probab=99.31  E-value=4.9e-12  Score=104.55  Aligned_cols=95  Identities=29%  Similarity=0.401  Sum_probs=84.1

Q ss_pred             EEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCc
Q 028493           52 IKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFV  131 (208)
Q Consensus        52 VkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~  131 (208)
                      ||+.++++|++|.+.+.|.++    .|.++|||++|+|+++|++++.+++||+|+...                      
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~----------------------   55 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA----------------------   55 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc----------------------
Confidence            789999999999999887643    257899999999999999999999999998642                      


Q ss_pred             cCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493          132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       132 ~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                               .|                   +|++|+.++...++++|+++++++++.+.+.+.|+|.++
T Consensus        56 ---------~g-------------------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~   96 (288)
T smart00829       56 ---------PG-------------------SFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYAL   96 (288)
T ss_pred             ---------CC-------------------ceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHH
Confidence                     13                   899999999999999999999999998888999999876

Enoylreductase in Polyketide synthases.

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.18  E-value=7.1e-11  Score=99.27  Aligned_cols=115  Identities=24%  Similarity=0.278  Sum_probs=87.4

Q ss_pred             eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEe--CCCCCCCCCCCEEeeeccCC
Q 028493           35 LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESV--GGGVEEVREGDLVLPVFQGD  112 (208)
Q Consensus        35 l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~v--G~~v~~~~vGd~V~~~~~~~  112 (208)
                      |+++++++|.|++||||||..|.++++.....++....+  ..|+.+|-..+|-+++.  -+....|++||.|....   
T Consensus        27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~~SY--~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~---  101 (340)
T COG2130          27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDAPSY--APPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVS---  101 (340)
T ss_pred             ceeEeccCCCCCcCceEEEEEEeccCHHHeecccCCccc--CCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecc---
Confidence            999999999999999999999999999666555443322  34666676666555542  26678899999998642   


Q ss_pred             CCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC-Cccc-eeecc
Q 028493          113 CGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI-PLDI-ACLLS  190 (208)
Q Consensus       113 c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~-~~~~-aa~l~  190 (208)
                                                                       +|+||.+++.+.+.++.... ++.. ...++
T Consensus       102 -------------------------------------------------GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLG  132 (340)
T COG2130         102 -------------------------------------------------GWQEYAISDGEGLRKLDPSPAPLSAYLGVLG  132 (340)
T ss_pred             -------------------------------------------------cceEEEeechhhceecCCCCCCcchHHhhcC
Confidence                                                             79999999999999997543 3322 44678


Q ss_pred             chhHHHhheeeee
Q 028493          191 CGVSTGNYRTLVD  203 (208)
Q Consensus       191 ~~~~ta~~al~~~  203 (208)
                      ..+.|||.+|+..
T Consensus       133 mpG~TAY~gLl~i  145 (340)
T COG2130         133 MPGLTAYFGLLDI  145 (340)
T ss_pred             CchHHHHHHHHHh
Confidence            8899999998643

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=98.92  E-value=1.5e-09  Score=90.57  Aligned_cols=77  Identities=29%  Similarity=0.352  Sum_probs=67.5

Q ss_pred             CCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCccccc
Q 028493           69 STQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRD  148 (208)
Q Consensus        69 g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~  148 (208)
                      |.++.  ++|.++|||++|+|+++|+++++|++||+|+..                                 +      
T Consensus        14 ~~~~~--~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~---------------------------------~------   52 (277)
T cd08255          14 GTEKL--PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF---------------------------------G------   52 (277)
T ss_pred             cCccC--cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec---------------------------------C------
Confidence            44554  688999999999999999999999999999853                                 1      


Q ss_pred             CCCceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493          149 LKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       149 ~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                                   .|++|++++...++++|+++++++++++ +.+.|||+++
T Consensus        53 -------------~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~   90 (277)
T cd08255          53 -------------PHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV   90 (277)
T ss_pred             -------------CcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH
Confidence                         6899999999999999999999888877 7889999875

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=98.08  E-value=4.2e-05  Score=64.73  Aligned_cols=113  Identities=26%  Similarity=0.261  Sum_probs=76.2

Q ss_pred             eEEE--EeecC-CCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceec----cceeEEEEEeCCCCCCCCCCCEEee
Q 028493           35 LVME--EIEVD-PPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILG----HEAVGVVESVGGGVEEVREGDLVLP  107 (208)
Q Consensus        35 l~~~--~~~~p-~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G----~e~~G~Vv~vG~~v~~~~vGd~V~~  107 (208)
                      |.++  +++.+ ++++++||||..|.+..+.....+.-..+.....|+.+|    ..++|.|++.  +-+++++||.|..
T Consensus        22 ~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~g   99 (343)
T KOG1196|consen   22 FEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVWG   99 (343)
T ss_pred             ceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEec--CCCCCCcCceEEE
Confidence            4443  44443 458899999999999999988766543322111222222    3788999994  5578999999986


Q ss_pred             eccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCc--EEEcC--CCCCc
Q 028493          108 VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH--VVKIT--PDIPL  183 (208)
Q Consensus       108 ~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~--v~~ip--~~~~~  183 (208)
                      ..                                                    +|.||.++.+..  .++++  .+.++
T Consensus       100 ~~----------------------------------------------------gWeeysii~~~~~~~~ki~~~~~~pL  127 (343)
T KOG1196|consen  100 IV----------------------------------------------------GWEEYSVITPNDLEHFKIQHPTDVPL  127 (343)
T ss_pred             ec----------------------------------------------------cceEEEEecCcchhcccCCCCCccCH
Confidence            43                                                    799999997653  34443  45555


Q ss_pred             cce-eeccchhHHHhheee
Q 028493          184 DIA-CLLSCGVSTGNYRTL  201 (208)
Q Consensus       184 ~~a-a~l~~~~~ta~~al~  201 (208)
                      ... ..++..++|||..++
T Consensus       128 s~ylg~lGm~glTAy~Gf~  146 (343)
T KOG1196|consen  128 SYYLGLLGMPGLTAYAGFY  146 (343)
T ss_pred             hhhhhccCCchhHHHHHHH
Confidence            553 356788999998764

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=97.60  E-value=4.8e-05  Score=74.12  Aligned_cols=111  Identities=18%  Similarity=0.156  Sum_probs=88.9

Q ss_pred             eEEEEeecC--C-CCCCeEEEEEEeeeCChhhhhhhcCCCCCC------CCCCceeccceeEEEEEeCCCCCCCCCCCEE
Q 028493           35 LVMEEIEVD--P-PKAGEVRIKILCTSLCHSDVTFWRSTQPPM------AVFPRILGHEAVGVVESVGGGVEEVREGDLV  105 (208)
Q Consensus        35 l~~~~~~~p--~-~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~------~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V  105 (208)
                      |++.+-+..  . ..++.=+--|-|+.||..|+++..|..+..      ......+|-|++|+          .+-|.||
T Consensus      1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRV 1498 (2376)
T ss_pred             eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEE
Confidence            566665554  2 356777888999999999999999986551      12347899999987          4568999


Q ss_pred             eeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccc
Q 028493          106 LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDI  185 (208)
Q Consensus       106 ~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~  185 (208)
                      ++....                              -                   ++++.+.++.+.++.+|++...++
T Consensus      1499 M~mvpA------------------------------k-------------------sLATt~l~~rd~lWevP~~WTlee 1529 (2376)
T KOG1202|consen 1499 MGMVPA------------------------------K-------------------SLATTVLASRDFLWEVPSKWTLEE 1529 (2376)
T ss_pred             EEeeeh------------------------------h-------------------hhhhhhhcchhhhhhCCcccchhh
Confidence            876531                              1                   789999999999999999999999


Q ss_pred             eeeccchhHHHhheeeeeE
Q 028493          186 ACLLSCGVSTGNYRTLVDV  204 (208)
Q Consensus       186 aa~l~~~~~ta~~al~~~~  204 (208)
                      |+.+++.+.|+|+||+.+-
T Consensus      1530 AstVP~VYsTaYYALVvRG 1548 (2376)
T KOG1202|consen 1530 ASTVPVVYSTAYYALVVRG 1548 (2376)
T ss_pred             cccCceEeeeehhhhhhhc
Confidence            9999999999999997654

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=95.60  E-value=0.014  Score=30.35  Aligned_cols=22  Identities=18%  Similarity=0.199  Sum_probs=15.8

Q ss_pred             eeeEEEecCCCCeEEEEeecCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPP   45 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~   45 (208)
                      |||++|+++++ +++++++.|.+
T Consensus         1 MkAv~y~G~~~-v~ve~VpdP~I   22 (23)
T PF13823_consen    1 MKAVVYHGPKD-VRVEEVPDPKI   22 (23)
T ss_dssp             -EEEEEEETTE-EEEEEE----S
T ss_pred             CcceEEeCCCc-eEEEECCCccc
Confidence            79999999998 99999998864

>PTZ00414 10 kDa heat shock protein; Provisional

Probab=86.93  E-value=1.5  Score=31.46  Aligned_cols=22  Identities=36%  Similarity=0.495  Sum_probs=18.6

Q ss_pred             eEEEEEeCCCCC----CCCCCCEEee
Q 028493           86 VGVVESVGGGVE----EVREGDLVLP  107 (208)
Q Consensus        86 ~G~Vv~vG~~v~----~~~vGd~V~~  107 (208)
                      .|.|+++|++..    .+++||+|+.
T Consensus        46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~   71 (100)
T PTZ00414         46 EGTVVAVAAATKDWTPTVKVGDTVLL   71 (100)
T ss_pred             eeEEEEECCCCccccceecCCCEEEE
Confidence            699999999854    3899999974

>PRK14533 groES co-chaperonin GroES; Provisional

Probab=81.85  E-value=2.9  Score=29.40  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=18.5

Q ss_pred             eeEEEEEeCCCCC----CCCCCCEEee
Q 028493           85 AVGVVESVGGGVE----EVREGDLVLP  107 (208)
Q Consensus        85 ~~G~Vv~vG~~v~----~~~vGd~V~~  107 (208)
                      ..|.|+++|++..    .+++||+|+.
T Consensus        36 ~~G~VvavG~g~~~~~~~Vk~GD~Vl~   62 (91)
T PRK14533         36 MKAEVVAVGKLDDEEDFDIKVGDKVIF   62 (91)
T ss_pred             ceEEEEEECCCCccccccccCCCEEEE
Confidence            4799999997542    3899999974

>PRK00364 groES co-chaperonin GroES; Reviewed

Probab=80.63  E-value=2.2  Score=30.16  Aligned_cols=24  Identities=42%  Similarity=0.487  Sum_probs=19.2

Q ss_pred             eeEEEEEeCCCCC---------CCCCCCEEeee
Q 028493           85 AVGVVESVGGGVE---------EVREGDLVLPV  108 (208)
Q Consensus        85 ~~G~Vv~vG~~v~---------~~~vGd~V~~~  108 (208)
                      ..|+|+++|++..         .+++||+|+..
T Consensus        36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~   68 (95)
T PRK00364         36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFG   68 (95)
T ss_pred             ceEEEEEECCCeECCCCCEeecccCCCCEEEEc
Confidence            4799999999642         38999999743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	208
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		1e-35
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		3e-35
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		4e-35
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		4e-35
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		4e-35
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		6e-35
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		2e-31
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		8e-31
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		9e-31
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		1e-30
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		1e-30
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		1e-30
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		1e-30
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		1e-30
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		1e-30
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-30
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		3e-30
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		3e-30
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		4e-30
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		4e-30
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		9e-30
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		1e-29
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		1e-29
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		3e-29
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-29
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-29
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		3e-29
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		5e-29
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		5e-29
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		1e-28
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		2e-27
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		1e-11
2h6e_A	344	Crystal Structure Of The D-Arabinose Dehydrogenase		1e-07
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		1e-05
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		1e-05
4ilk_A	359	Crystal Structure Of Short Chain Alcohol Dehydrogen		3e-04
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		5e-04

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 108/183 (59%), Gaps = 3/183 (1%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           +T G++I C+AA++  P KPLV+E+++V PP+AGEVRIKIL T+LCH+D   W S + P 
Sbjct: 1   ATQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTW-SGKDPE 59
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
            +FP IL                     D V+P +Q +C EC+ CKS K+N+C K  +  
Sbjct: 60  GLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSAT 119
Query: 135 NQS-MPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGV 193
               M  D  +RF  + G+ I++ +  S+F++YTVV    V KI P  PLD  CLL CGV
Sbjct: 120 GVGIMMNDRKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGV 178
Query: 194 STG 196
            TG
Sbjct: 179 PTG 181

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/181 (42%), Positives = 106/181 (58%), Gaps = 2/181 (1%)
Query: 16  TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           +A ++I+C+AA++   GKPL +EEIEV PPKA EVRIKI+ T++CH+D  +  S   P  
Sbjct: 1   SANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTD-AYTLSGADPEG 59
Query: 76  VFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN 135
            FP IL                     D V+P++   CGEC+ C +PK+N+C K      
Sbjct: 60  CFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQG 119
Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
           + +  DGT+RF   KG+ I + +  S+F+EYTVV    V KI P  PLD  CLL CG+ST
Sbjct: 120 KGLMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGIST 178
Query: 196 G 196
           G
Sbjct: 179 G 179

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 105/180 (58%), Gaps = 2/180 (1%)
Query: 17  AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
           A ++I+C+AA++   GKPL +EEIEV PPKA EVRIKI+ T++CH+D  +  S   P   
Sbjct: 2   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTD-AYTLSGADPEGC 60
Query: 77  FPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
           FP IL                     D V+P++   CGEC+ C +PK+N+C K      +
Sbjct: 61  FPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 120
Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
            +  DGT+RF   KG+ I + +  S+F+EYTVV    V KI P  PLD  CLL CG+STG
Sbjct: 121 GLMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTG 179

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 105/180 (58%), Gaps = 2/180 (1%)
Query: 17  AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
           A ++I+C+AA++   GKPL +EEIEV PPKA EVRIKI+ T++CH+D  +  S   P   
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTD-AYTLSGADPEGC 59
Query: 77  FPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
           FP IL                     D V+P++   CGEC+ C +PK+N+C K      +
Sbjct: 60  FPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 119
Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
            +  DGT+RF   KG+ I + +  S+F+EYTVV    V KI P  PLD  CLL CG+STG
Sbjct: 120 GLMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTG 178

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 105/180 (58%), Gaps = 2/180 (1%)
Query: 17  AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
           A ++I+C+AA++   GKPL +EEIEV PPKA EVRIKI+ T++CH+D  +  S   P   
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTD-AYTLSGADPEGC 59
Query: 77  FPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
           FP IL                     D V+P++   CGEC+ C +PK+N+C K      +
Sbjct: 60  FPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 119
Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
            +  DGT+RF   KG+ I + +  S+F+EYTVV    V KI P  PLD  CLL CG+STG
Sbjct: 120 GLMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTG 178

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 111/190 (58%), Gaps = 3/190 (1%)
Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
            D  ++S+T G++I C+AA++  P KPLV+E+++V PP+AGEVR+K+L T+LCH+D   W
Sbjct: 12  QDPNSSSATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTW 71
Query: 68  RSTQPPMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNIC 127
            S + P  +FP +L                     D V+P +Q +C EC+ CKS K+N+C
Sbjct: 72  -SGKDPEGLFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLC 130
Query: 128 SKFVNKDNQS-MPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186
            K         M  D  +RF  + G+ I++ +  S+F++YTVV    V KI P  PL+  
Sbjct: 131 GKVRAATGVGVMMNDRKSRF-SINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKV 189
Query: 187 CLLSCGVSTG 196
           CLL CGV TG
Sbjct: 190 CLLGCGVPTG 199

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 100/182 (54%), Gaps = 2/182 (1%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           +T GK+I+C+AA++    KPLV+EEIEVD P A E+RIKI+ T +CH+D+      +   
Sbjct: 1   ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
             FP +L                     + V+P+F   CGECR C+SPK+N C K    +
Sbjct: 61  G-FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANE 119
Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194
           +  +      RF   KG  +   L  S+F++YTVV+   V KI P  PLD  CLL CGVS
Sbjct: 120 SPDVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVS 178
Query: 195 TG 196
           TG
Sbjct: 179 TG 180

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  130 bits (326), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDQVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P+F   CG+CR CK P+ N C     K+
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCL----KN 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGNYRTLVDV 204
           CG STG Y + V V
Sbjct: 174 CGFSTG-YGSAVKV 186

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score =  129 bits (325), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P+F   CG+CR CK P+ N C     K+
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCL----KN 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGNYRTLVDV 204
           CG STG Y + V V
Sbjct: 174 CGFSTG-YGSAVKV 186

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P+F   CG+CR CK P+ N C     K+
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCL----KN 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGNYRTLVDV 204
           CG STG Y + V V
Sbjct: 174 CGFSTG-YGSAVKV 186

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P+F   CG+CR CK P+ N C     K+
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCL----KN 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGNYRTLVDV 204
           CG STG Y + V V
Sbjct: 174 CGFSTG-YGSAVKV 186

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P+F   CG+CR CK P+ N C     K+
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCL----KN 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGNYRTLVDV 204
           CG STG Y + V V
Sbjct: 174 CGFSTG-YGSAVKV 186

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P+F   CG+CR CK P+ N C     K+
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCL----KN 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGNYRTLVDV 204
           CG STG Y + V V
Sbjct: 174 CGFSTG-YGSAVKV 186

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P+F   CG+CR CK P+ N C     K+
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCL----KN 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGNYRTLVDV 204
           CG STG Y + V V
Sbjct: 174 CGFSTG-YGSAVKV 186

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 105/186 (56%), Gaps = 6/186 (3%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
            T GK+I+C+AAI+   GKPL +EE+EV PPKA EVRI+I+ TSLCH+D T   S    +
Sbjct: 3   GTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGL 62
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVN-- 132
           A FP I+                     D V+P++   C +C+ C SP +N+C K  N  
Sbjct: 63  A-FPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLK 121
Query: 133 --KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
               +Q +  D T+RF   KG+ +++    S+F++YTVV   ++ KI  D  L+  CLL 
Sbjct: 122 SPASDQQLMEDKTSRFT-CKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLG 180
Query: 191 CGVSTG 196
           CG STG
Sbjct: 181 CGFSTG 186

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/192 (40%), Positives = 106/192 (55%), Gaps = 8/192 (4%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSD--VTFWRSTQP 72
           STAGK+I+C+AA+     KP  +E++EV PPKA EVRIK++   +CH+D  V       P
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICHTDDHVVSGNLVTP 60
Query: 73  PMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
                P IL                     D V+P+F   CG+CR CK+P+SN C K   
Sbjct: 61  ----LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDL 116
Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            + +   +DGT RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ CG
Sbjct: 117 GNPRGTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCG 175
Query: 193 VSTGNYRTLVDV 204
            STG Y + V+V
Sbjct: 176 FSTG-YGSAVNV 186

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P++   CG+CR CK P+ N C     K+
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCL----KN 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGNYRTLVDV 204
           CG STG Y + V V
Sbjct: 174 CGFSTG-YGSAVKV 186

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 106/194 (54%), Gaps = 12/194 (6%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P++   CG+CR CK P+ N C     K+
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCL----KN 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGNYRTLVDV 204
           CG STG Y + V V
Sbjct: 174 CGFSTG-YGSAVKV 186

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 105/194 (54%), Gaps = 13/194 (6%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++   +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
           A  P I                      D V+P+F   CG+C  CK P+ N+C K     
Sbjct: 59  APLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLK----- 113
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           N SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 114 NLSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVG 172
Query: 191 CGVSTGNYRTLVDV 204
           CG STG Y + V V
Sbjct: 173 CGFSTG-YGSAVKV 185

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 99/181 (54%), Gaps = 4/181 (2%)
Query: 16  TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           TAGK I C+AA++  P KPL +E I V PPKA EVRIKIL + +C SD +  +   P  +
Sbjct: 3   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP--S 60
Query: 76  VFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN 135
            FP IL                     D V+P+F   CG CR CKS  SN C K      
Sbjct: 61  KFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAK 120
Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
             +  D T+RF   +G+ I+N++  S+FTEYTVV    V KI P  PL+ +CL+ CG +T
Sbjct: 121 TGLMADMTSRF-TCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFAT 178
Query: 196 G 196
           G
Sbjct: 179 G 179

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score =  126 bits (316), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 104/192 (54%), Gaps = 8/192 (4%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSD--VTFWRSTQP 72
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++   +C SD  V       P
Sbjct: 1   STAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTP 60
Query: 73  PMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
                P IL                     D V+P+F   CG+CR CK+P+SN C K   
Sbjct: 61  ----LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDL 116
Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            + +   +DGT RF    G+ IH+ + VS+F++YTVVD   V KI    PL+  CL+ CG
Sbjct: 117 GNPRGTLQDGTRRF-TCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCG 175
Query: 193 VSTGNYRTLVDV 204
            STG Y + V V
Sbjct: 176 FSTG-YGSAVKV 186

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 105/194 (54%), Gaps = 12/194 (6%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T   +
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I                      D V+P+    CG+CR CK P+ N C     K+
Sbjct: 59  TPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLATPQCGKCRVCKHPEGNFCL----KN 114
Query: 135 NQSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLS 190
           + SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ 
Sbjct: 115 DLSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIG 173
Query: 191 CGVSTGNYRTLVDV 204
           CG STG Y + V V
Sbjct: 174 CGFSTG-YGSAVKV 186

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/193 (40%), Positives = 104/193 (53%), Gaps = 13/193 (6%)
Query: 16  TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           TAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++   +C SD      T   +A
Sbjct: 2   TAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTL--VA 59
Query: 76  VFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN 135
             P I                      D V+P+F   CG+C  CK P+ N+C K     N
Sbjct: 60  PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLK-----N 114
Query: 136 QSMPR----DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
            SMPR    DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ C
Sbjct: 115 LSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGC 173
Query: 192 GVSTGNYRTLVDV 204
           G STG Y + V V
Sbjct: 174 GFSTG-YGSAVKV 185

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 100/182 (54%), Gaps = 4/182 (2%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
            TAGK+I+C+AA+     +P  +EEIEV PPK  EVRIKIL T +C +D    + T   +
Sbjct: 1   GTAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTM--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
           + FP I+                     D V+P+F   C EC  C++P  N+C +  +  
Sbjct: 59  SKFPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIR-SDIT 117
Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194
            + +  DGT RF   KG+ +H+ LN S+FTEYTVVD + V KI    P +  CL+ CG S
Sbjct: 118 GRGVLADGTTRFT-CKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFS 176
Query: 195 TG 196
           TG
Sbjct: 177 TG 178

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/192 (39%), Positives = 105/192 (54%), Gaps = 8/192 (4%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSD--VTFWRSTQP 72
           STAGK+I+C+AA+     KP  +E++EV PPKA EVRIK++   +C +D  V       P
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTP 60
Query: 73  PMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
                P IL                     D V+P+F   CG+CR CK+P+SN C K   
Sbjct: 61  ----LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDL 116
Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            + +   +DGT RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ CG
Sbjct: 117 GNPRGTLQDGTRRF-TCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCG 175
Query: 193 VSTGNYRTLVDV 204
            STG Y + V+V
Sbjct: 176 FSTG-YGSAVNV 186

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/192 (39%), Positives = 105/192 (54%), Gaps = 8/192 (4%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSD--VTFWRSTQP 72
           STAGK+I+C+AA+     KP  +E++EV PPKA EVRIK++   +C +D  V       P
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICGTDDHVVSGNLVTP 60
Query: 73  PMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
                P IL                     D V+P+F   CG+CR CK+P+SN C K   
Sbjct: 61  ----LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDL 116
Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            + +   +DGT RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ CG
Sbjct: 117 GNPRGTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCG 175
Query: 193 VSTGNYRTLVDV 204
            STG Y + V+V
Sbjct: 176 FSTG-YGSAVNV 186

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/192 (39%), Positives = 105/192 (54%), Gaps = 8/192 (4%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSD--VTFWRSTQP 72
           STAGK+I+C+AA+     KP  +E++EV PPKA EVRIK++   +C +D  V       P
Sbjct: 1   STAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTP 60
Query: 73  PMAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVN 132
                P IL                     D V+P+F   CG+CR CK+P+SN C K   
Sbjct: 61  ----LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDL 116
Query: 133 KDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            + +   +DGT RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ CG
Sbjct: 117 GNPRGTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCG 175
Query: 193 VSTGNYRTLVDV 204
            STG Y + V+V
Sbjct: 176 FSTG-YGSAVNV 186

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 100/182 (54%), Gaps = 4/182 (2%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
            TAGK+I+C+AA+     +P  +EEIEV PPK  EVRIKIL T +C +D    + T   +
Sbjct: 1   GTAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTM--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
           + FP I+                     D V+P+F   C EC  C++P  N+C +  +  
Sbjct: 59  SKFPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIR-SDIT 117
Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194
            + +  DGT RF   KG+ +H+ +N S+FTEYTVVD + V KI    P +  CL+ CG S
Sbjct: 118 GRGVLADGTTRFT-CKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFS 176
Query: 195 TG 196
           TG
Sbjct: 177 TG 178

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 105/190 (55%), Gaps = 4/190 (2%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++   +C +D      T   +
Sbjct: 1   STAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTM--V 58
Query: 75  AVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P IL                     D V+P+    CG+CR CK+P+SN C K    +
Sbjct: 59  TPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSN 118
Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194
            Q   +DGT+RF   + + IH+ L +S+F++YTVVD   V KI    PL+  CL+ CG S
Sbjct: 119 PQGTLQDGTSRFT-CRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFS 177
Query: 195 TGNYRTLVDV 204
           TG Y + V+V
Sbjct: 178 TG-YGSAVNV 186

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 104/187 (55%), Gaps = 9/187 (4%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP-P 73
            T GK+I+C+AAI+   G PL +EEIEV PPKA EVRI+++ T +CH+D+    +T P  
Sbjct: 1   GTQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCHTDI---NATDPKK 57
Query: 74  MAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNK 133
            A+FP +L                     D V+P F   C  C+ C SP +N+C K  N 
Sbjct: 58  KALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNF 117
Query: 134 D----NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLL 189
                +Q +  D T+RF   KG  I++ + VSSF++YTVV   ++ ++  +  L+  CL+
Sbjct: 118 KYPTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLI 176
Query: 190 SCGVSTG 196
            CG S+G
Sbjct: 177 GCGFSSG 183

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 103/187 (55%), Gaps = 9/187 (4%)
Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP-P 73
            T GK+I+C+AAI+   G PL +EEIEV PPKA EVRI+++ T +C +D+    +T P  
Sbjct: 1   GTQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDI---NATDPKK 57
Query: 74  MAVFPRILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNK 133
            A+FP +L                     D V+P F   C  C+ C SP +N+C K  N 
Sbjct: 58  KALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNF 117
Query: 134 D----NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLL 189
                +Q +  D T+RF   KG  I++ + VSSF++YTVV   ++ ++  +  L+  CL+
Sbjct: 118 KYPTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLI 176
Query: 190 SCGVSTG 196
            CG S+G
Sbjct: 177 GCGFSSG 183

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 4/173 (2%)
Query: 25  AAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILXXX 84
           AA++   G    ++ +++  P+  EV +K++ T +CH+D+   R  + P+ + P +L   
Sbjct: 9   AAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIV-RDQKYPVPL-PAVLGHE 66
Query: 85  XXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTN 144
                             D V+  + G CG+C  C +     CS+F  ++      +G +
Sbjct: 67  GSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNH 125
Query: 145 RF-RDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
                 +G V  +    SSF  Y +    + VK+T D+P+++   L CG+ TG
Sbjct: 126 ALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTG 178

>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 20  IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV-FP 78
           +++ +AA+ +   +PL +E++ +  P+  EV I+I    +C +D+  W+  +       P
Sbjct: 1   MVKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLP 60
Query: 79  RILXXXXXXXXXXXXXXXXXXXXXDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM 138
            IL                     ++V+    GD   CR C+  K NIC       NQ +
Sbjct: 61  IILGHENAGTIVEVGELAKVKKGDNVVVYATWGDL-TCRYCREGKFNICK------NQII 113
Query: 139 PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH-VVKITPDIPLDIACLLSCGVST 195
           P   TN                  F+EY +V  +  +VK+    P++ A L   G ++
Sbjct: 114 PGQTTN----------------GGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTS 155

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 68/180 (37%), Gaps = 26/180 (14%)
Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILXX 83
           +AA+ R  GKPL ++E+ +  P  G++++ I  + +CH+D+       P     P I   
Sbjct: 27  KAAVVRAFGKPLTIDEVPIPQPGPGQIQVAIQASGVCHTDLHAAEGDWPVKPNPPFIPGH 86
Query: 84  XXXXXXXXXXXXXXXXXXXDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
                              D V +P     CG CR C      +C + +N          
Sbjct: 87  EGVGFVSAVGSGVKHVKEGDRVGIPWLYTACGHCRHCLGGWETLCEEQLN---------- 136
Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPL-DIACLLSCGVSTGNYRTL 201
                   G  ++       F EY V D   V  +  +I   +IA +L  GV+   Y+ L
Sbjct: 137 -------TGYSVN-----GGFAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVTV--YKGL 182

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 1/110 (0%)
Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILXX 83
           +AA+ R  G PL ++E+ V  P  G+V++KI  + +CH+D+       P     P I   
Sbjct: 4   KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGH 63
Query: 84  XXXXXXXXXXXXXXXXXXXDLV-LPVFQGDCGECRDCKSPKSNICSKFVN 132
                              D V +P     CG C  C      +C K  N
Sbjct: 64  EGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQN 113

>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 39  EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILXXXXXXXXXXXXXXXXX 98
           E E+  P AGEVR+K+    +C SD   +R    P A +PR++                 
Sbjct: 36  EREIPTPSAGEVRVKVKLAGICGSDSHIYRGHN-PFAKYPRVIGHEFFGVIDAVGEGVES 94
Query: 99  XXXXDLVL--PVFQGDCGECRDCKSPKSNICS 128
               + V   PV    CG C  C   K N+C+
Sbjct: 95  ARVGERVAVDPVV--SCGHCYPCSIGKPNVCT 124

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 26/180 (14%)
Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILXX 83
           +AA+    G PL +EE++V  P  G+V +KI  + +CH+D+       P     P I   
Sbjct: 8   KAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGH 67
Query: 84  XXXXXXXXXXXXXXXXXXXDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
                              D V +P     CG C  C +    +C    ++ N     +G
Sbjct: 68  EGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCE---SQQNTGYSVNG 124
Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPL-DIACLLSCGVSTGNYRTL 201
                               + EY + D  +V  +  ++   +IA +L  GV+   Y+ L
Sbjct: 125 -------------------GYAEYVLADPNYVGILPKNVEFAEIAPILCAGVTV--YKGL 163

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	208
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	2e-94
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	3e-93
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	3e-92
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	2e-91
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	3e-90
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	2e-72
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	1e-60
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	2e-39
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	4e-34
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	1e-33
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	3e-33
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	6e-33
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	1e-32
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	2e-31
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	3e-30
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	5e-29
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	5e-28
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	2e-27
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	2e-27
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	2e-26
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	9e-25
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	1e-24
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	2e-24
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	2e-23
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-23
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	1e-19
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	1e-19
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	4e-19
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	7e-19
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	7e-19
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	2e-18
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	3e-17
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	1e-16
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	2e-16
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	1e-15
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	2e-15
3gms_A	340	Putative NADPH:quinone reductase; structural genom	3e-15
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	2e-14
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	3e-14
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	4e-14
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	7e-13
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	1e-12
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	1e-12
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	2e-12
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	3e-12
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	7e-12
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	5e-11
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	6e-11
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	7e-11
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	2e-10
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	2e-10
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	4e-10
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	1e-09
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	2e-09
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	2e-09
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	5e-09
4eye_A	342	Probable oxidoreductase; structural genomics, niai	5e-09
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	9e-09
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	9e-07
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	2e-06

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  279 bits (715), Expect = 2e-94
 Identities = 77/185 (41%), Positives = 113/185 (61%), Gaps = 7/185 (3%)

Query: 16  TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           T GK+I+C+AAI+   G PL +EEIEV PPKA EVRI+++ T +C +D+      +    
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA-- 59

Query: 76  VFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF----V 131
           +FP +LGHE  G+VESVG GV   + GD V+P F   C  C+ C SP +N+C K      
Sbjct: 60  LFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKY 119

Query: 132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
              +Q +  D T+RF   KG  I++ + VSSF++YTVV   ++ ++  +  L+  CL+ C
Sbjct: 120 PTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGC 178

Query: 192 GVSTG 196
           G S+G
Sbjct: 179 GFSSG 183

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  275 bits (707), Expect = 3e-93
 Identities = 88/180 (48%), Positives = 119/180 (66%), Gaps = 2/180 (1%)

Query: 17  AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
           A ++I+C+AA++   GKPL +EEIEV PPKA EVRIKI+ T++CH+D     S   P   
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTL-SGADPEGC 59

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
           FP ILGH   G+VESVG GV +++ GD V+P++   CGEC+ C +PK+N+C K      +
Sbjct: 60  FPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 119

Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
            +  DGT+RF   KG+ I + +  S+F+EYTVV    V KI P  PLD  CLL CG+STG
Sbjct: 120 GLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTG 178

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  273 bits (701), Expect = 3e-92
 Identities = 91/182 (50%), Positives = 115/182 (63%), Gaps = 4/182 (2%)

Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
            TAGK I C+AA++  P KPL +E I V PPKA EVRIKIL + +C SD +  +   P  
Sbjct: 2   CTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS- 60

Query: 75  AVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
             FP ILGHEAVGVVES+G GV  V+ GD V+P+F   CG CR CKS  SN C K     
Sbjct: 61  -KFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGA 119

Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194
              +  D T+RF   +G+ I+N++  S+FTEYTVV    V KI P  PL+ +CL+ CG +
Sbjct: 120 KTGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFA 177

Query: 195 TG 196
           TG
Sbjct: 178 TG 179

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  271 bits (696), Expect = 2e-91
 Identities = 86/182 (47%), Positives = 115/182 (63%), Gaps = 2/182 (1%)

Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           +T GK+I+C+AA++    KPLV+EEIEVD P A E+RIKI+ T +CH+D+      +   
Sbjct: 1   ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK- 59

Query: 75  AVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
             FP +LGHE  G+VESVG GV E + G+ V+P+F   CGECR C+SPK+N C K    +
Sbjct: 60  DGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANE 119

Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194
           +  +      RF   KG  +   L  S+F++YTVV+   V KI P  PLD  CLL CGVS
Sbjct: 120 SPDVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVS 178

Query: 195 TG 196
           TG
Sbjct: 179 TG 180

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  268 bits (688), Expect = 3e-90
 Identities = 87/182 (47%), Positives = 113/182 (62%), Gaps = 3/182 (1%)

Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T    
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT- 59

Query: 75  AVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
              P I GHEA G+VES+G GV  VR GD V+P+F   CG+CR CK P+ N C K     
Sbjct: 60  -PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSM 118

Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194
            +   +DGT+RF   +G+ IH+ L  S+F++YTVVD   V KI    PL+  CL+ CG S
Sbjct: 119 PRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFS 177

Query: 195 TG 196
           TG
Sbjct: 178 TG 179

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  222 bits (569), Expect = 2e-72
 Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 4/179 (2%)

Query: 19  KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFP 78
           ++    AA++   G    ++ +++  P+  EV +K++ T +CH+D+       P     P
Sbjct: 3   ELKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP--LP 60

Query: 79  RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM 138
            +LGHE  G++E++G  V E++ GD V+  + G CG+C  C +     CS+F  ++    
Sbjct: 61  AVLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGA 119

Query: 139 PRDGTNRFRDL-KGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
             +G +      +G V  +    SSF  Y +    + VK+T D+P+++   L CG+ TG
Sbjct: 120 DSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTG 178

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  192 bits (491), Expect = 1e-60
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 20/182 (10%)

Query: 21  IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           ++  A +     +PLV +E E+     G + ++IL   +C SDV  +R   P +   P I
Sbjct: 16  LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRV-PLPII 74

Query: 81  LGHEAVGVVESVGGGV-----EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN 135
           LGHE  G V  V G       E ++ GDL++      CGEC  CK  K        N+  
Sbjct: 75  LGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCP--NRKV 132

Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV-THVVKITPDIPLDIACLLSCGVS 194
             +   G + +  L+G           ++ + V+D  T V+K++    LD+  +  C  +
Sbjct: 133 YGIN-RGCSEYPHLRG----------CYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGA 181

Query: 195 TG 196
           T 
Sbjct: 182 TA 183

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  136 bits (346), Expect = 2e-39
 Identities = 44/177 (24%), Positives = 64/177 (36%), Gaps = 23/177 (12%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV-FPRILG 82
           +A      G   V+ +I    P  GE+ +K+    LCHSD+          A   P  LG
Sbjct: 2   KAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61

Query: 83  HEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS--MPR 140
           HE VG V  +G GV     GD V       CG C  C   + N C++  +       +  
Sbjct: 62  HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGS 121

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI-PLDIACLLSCGVSTG 196
            G+                     EY +VD    +    D+ P+  A L   G++  
Sbjct: 122 PGS-------------------MAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPY 159

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  123 bits (310), Expect = 4e-34
 Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 26/180 (14%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AA+ R  G PL ++E+ V  P  G+V++KI  + +CH+D+       P     P I GH
Sbjct: 4   KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGH 63

Query: 84  EAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           E VG V +VG GV  V+EGD V +P     CG C  C      +C     + N     +G
Sbjct: 64  EGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCE---KQQNTGYSVNG 120

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC-GVSTGNYRTL 201
                               + EY V D  +V  +   +       + C GV+   Y+ L
Sbjct: 121 G-------------------YGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTV--YKGL 159

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  121 bits (307), Expect = 1e-33
 Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 24/174 (13%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AA+     +PL ++E+E      GEV ++I    +CH+D+       P     P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 84  EAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           E VG+VE VG GV  ++ GD V +P     CG C  C S +  +C    ++ N     DG
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCE---HQKNAGYSVDG 118

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC-GVST 195
                               + EY      +VVKI  ++  + A  + C GV+T
Sbjct: 119 G-------------------YAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTT 153

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  120 bits (304), Expect = 3e-33
 Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 31/182 (17%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV-FPRILG 82
           +AA+ +   +PL +E++ +  P+  EV I+I    +C +D+  W+  +       P ILG
Sbjct: 5   KAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILG 64

Query: 83  HEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP--- 139
           HE  G +  V G + +V++GD V+         CR C+  K NIC       NQ +P   
Sbjct: 65  HENAGTIVEV-GELAKVKKGDNVVVYATWGDLTCRYCREGKFNIC------KNQIIPGQT 117

Query: 140 RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYR 199
            +G                    F+EY +V  +  +     +    A  L+   +T    
Sbjct: 118 TNG-------------------GFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTS-MG 157

Query: 200 TL 201
            +
Sbjct: 158 AI 159

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  120 bits (302), Expect = 6e-33
 Identities = 47/182 (25%), Positives = 67/182 (36%), Gaps = 35/182 (19%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR-------STQPPMAV 76
           RA      GKPL ++EI V  PK  +V IK+    +CHSDV   +         +     
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
            P  LGHE  G +E VG  V    +GDLV        G C  C+  + ++C      D+ 
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLC------DSP 115

Query: 137 SMP---RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGV 193
                  DG                   ++ EY +V     +     +    A  L+C  
Sbjct: 116 RWLGINFDG-------------------AYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSG 156

Query: 194 ST 195
            T
Sbjct: 157 IT 158

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  119 bits (301), Expect = 1e-32
 Identities = 44/184 (23%), Positives = 68/184 (36%), Gaps = 38/184 (20%)

Query: 24  RAAISRIPGKPLVMEEIEV-DPPKAGEVRIKILCTSLCHSDVTF----WRSTQPPMAVFP 78
           +AA      KPL +E+++        +V ++I    +CH+D+      W     P    P
Sbjct: 17  KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPK--LP 74

Query: 79  RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM 138
             LGHE VG +E V  GVE + +GD V+       G C  C++ +   C      +N   
Sbjct: 75  YTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHC------ENLEF 128

Query: 139 P---RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDI---ACLLSCG 192
           P    DG                    F E+       V+K+  DI  +       L+  
Sbjct: 129 PGLNIDGG-------------------FAEFMRTSHRSVIKLPKDISREKLVEMAPLADA 169

Query: 193 VSTG 196
             T 
Sbjct: 170 GITA 173

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  116 bits (292), Expect = 2e-31
 Identities = 40/175 (22%), Positives = 62/175 (35%), Gaps = 24/175 (13%)

Query: 23  CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILG 82
            +  I       L  ++I V  PKA E+ I +  + +CH+D+  W    P     P + G
Sbjct: 6   QKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGG 65

Query: 83  HEAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           HE  GVV  +G  V+  + GD   +    G C  C  C+    + C    + D      D
Sbjct: 66  HEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNC---PHADLSGYTHD 122

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC-GVST 195
           G+                   F +Y   D      I     L     + C G++ 
Sbjct: 123 GS-------------------FQQYATADAVQAAHIPQGTDLAQVAPILCAGITV 158

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  113 bits (284), Expect = 3e-30
 Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 41/182 (22%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR--STQPPMAVFPRIL 81
           RA     P + L + +  V  P  GE+ +++   S+C +D+  W+  +        P + 
Sbjct: 2   RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVT 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLV-----LPVFQGDCGECRDCKSPKSNICS--KFVNKD 134
           GHE  GVVE+VG GV   + GD V     +      C  C  C++   ++C   + +   
Sbjct: 62  GHEFSGVVEAVGPGVRRPQVGDHVSLESHIV-----CHACPACRTGNYHVCLNTQIL--- 113

Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSC 191
              + RDG                    F EY VV   +      D+P ++A +      
Sbjct: 114 --GVDRDGG-------------------FAEYVVVPAENAWVNPKDLPFEVAAILEPFGN 152

Query: 192 GV 193
            V
Sbjct: 153 AV 154

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  109 bits (275), Expect = 5e-29
 Identities = 50/177 (28%), Positives = 73/177 (41%), Gaps = 31/177 (17%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ--PPMAVFPRIL 81
            A +   PG    + E++V  P  GEV IK+L TS+C +D+  +   +        P+I+
Sbjct: 6   VAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIM 65

Query: 82  GHEAVGVVESVGGGVEEVREGDLVL--PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP 139
           GHE  G V  +G GVE +  GD V         CG+C  C+  + ++C    N     + 
Sbjct: 66  GHEVAGEVVEIGPGVEGIEVGDYVSVETHI--VCGKCYACRRGQYHVCQ---NTKIFGVD 120

Query: 140 RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGV 193
            DG                    F EY VV   ++ K    IP + A L   L   V
Sbjct: 121 TDGV-------------------FAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAV 158

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  107 bits (269), Expect = 5e-28
 Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 32/175 (18%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +A      G  + +  + +  P   ++ +K+    +C +D        P  +  P  LGH
Sbjct: 25  KAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP--STPPVTLGH 81

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICS--KFVNKDNQSMPRD 141
           E  G+V   G  V ++  G  +       CG C  C++ + N+C   + +      + RD
Sbjct: 82  EFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAI-----GIHRD 136

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGV 193
           G                    F EY +V      +I   +          L+C +
Sbjct: 137 G-------------------GFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL 172

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  105 bits (265), Expect = 2e-27
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 43/181 (23%)

Query: 24  RAAISRIPGKPLVMEEIEV-DPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILG 82
           ++ ++   G  + + E  + +     EVR+KI  + LC SD+            +P  LG
Sbjct: 2   KSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKN--GAHYYPITLG 58

Query: 83  HEAVGVVESVGGGVEEVREGDLV-----LPVFQGDCGECRDCKSPKSNICS--KFVNKDN 135
           HE  G +++VG GV+++  GD V     LP     C  C +C     + C+   F+    
Sbjct: 59  HEFSGYIDAVGSGVDDLHPGDAVACVPLLP-----CFTCPECLKGFYSQCAKYDFI---- 109

Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCG 192
               RDG                    F EY VV   +V  +  D+P++       ++ G
Sbjct: 110 -GSRRDGG-------------------FAEYIVVKRKNVFALPTDMPIEDGAFIEPITVG 149

Query: 193 V 193
           +
Sbjct: 150 L 150

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  105 bits (265), Expect = 2e-27
 Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 30/176 (17%)

Query: 26  AISRIPGKP-LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ--PPMAVFPRILG 82
           AI+   G+   V+ E     P++GE  ++ L   +C +D           P      +LG
Sbjct: 3   AIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLG 62

Query: 83  HEAVGVVESVGGGVEEVREGDLVL--PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR 140
           HEAVGVV  V     E+ EGD+V+         G     +  + ++    +  +   +  
Sbjct: 63  HEAVGVV--VDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGA 120

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGV 193
            G                     +E+      ++V+I P    ++  L   +S   
Sbjct: 121 HGY-------------------MSEFFTSPEKYLVRI-PRSQAELGFLIEPISITE 156

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  103 bits (258), Expect = 2e-26
 Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 31/178 (17%)

Query: 24  RAAISRIPGKPLVMEEIEV-DPPKAGEVRIKILCTSLCHSDVTFWR----STQPPMAVFP 78
           +A I + P   + +++++       G+++I+ +   +C +D          +  P     
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61

Query: 79  RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM 138
            +LGHEA+GVVE    G     +GDLV+PV +  CG CR+C   + + C      +    
Sbjct: 62  LVLGHEAIGVVEESYHG---FSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIH 118

Query: 139 PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGV 193
             DG                      E+   D  ++VKI P    DI  L   L+   
Sbjct: 119 KMDGF-------------------MREWWYDDPKYLVKI-PKSIEDIGILAQPLADIE 156

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 98.5 bits (246), Expect = 9e-25
 Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 40/171 (23%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR--STQPPMAVFPRILGHEAVGVVESV 92
           L +E+  +  PK  EV +++    +C SDV ++        +   P ++GHEA G V  V
Sbjct: 16  LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKV 75

Query: 93  GGGVEEVREGDLV-----LPVFQGDCGECRDCKSPKSNICS--KFVNKDNQSMPRDGTNR 145
           G  V+ +++GD V     +P     C  C+ CK  K N+C    F      + P DG   
Sbjct: 76  GKNVKHLKKGDRVAVEPGVP-----CRRCQFCKEGKYNLCPDLTFCA----TPPDDGN-- 124

Query: 146 FRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGV 193
                               Y V       K+  ++ L+   L   LS GV
Sbjct: 125 -----------------LARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV 158

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 98.1 bits (245), Expect = 1e-24
 Identities = 38/178 (21%), Positives = 63/178 (35%), Gaps = 42/178 (23%)

Query: 29  RIPGKPLVMEEIEVDP-PKAGEVRIKILCTSLCHSDVTFWR--STQPPMAVFPRILGHEA 85
            I      +E ++     K GEV + +  T +C SDV FW+     P +     +LGHE+
Sbjct: 21  WISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHES 80

Query: 86  VGVVESVGGGVEEVREGDLV-----LPVFQGDCGECRDCKSPKSNICS--KFVNKDNQSM 138
            G V +V   V+ ++ GD V     +      C  C  C + + N C    F++    + 
Sbjct: 81  AGEVIAVHPSVKSIKVGDRVAIEPQVI-----CNACEPCLTGRYNGCERVDFLS----TP 131

Query: 139 PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGV 193
           P  G                       Y         KI  ++  +   +   LS  +
Sbjct: 132 PVPGL-------------------LRRYVNHPAVWCHKI-GNMSYENGAMLEPLSVAL 169

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 97.7 bits (244), Expect = 2e-24
 Identities = 39/176 (22%), Positives = 61/176 (34%), Gaps = 50/176 (28%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRS-------TQPPMAVFPRILGHEAVG 87
           L +E   +  P   EV +++    +C SDV +W          + PM     +LGHEA G
Sbjct: 19  LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPM-----VLGHEASG 73

Query: 88  VVESVGGGVEEVREGDLV-----LPVFQGDCGECRDCKSPKSNICS--KFVNKDNQSMPR 140
            VE VG  V+ ++ GD V      P           CK  + N+     F      + P 
Sbjct: 74  TVEKVGSSVKHLKPGDRVAIEPGAP-----RENDEFCKMGRYNLSPSIFFC----ATPPD 124

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACL---LSCGV 193
           DG                       +   +     K+  ++  +   L   LS G+
Sbjct: 125 DGN-------------------LCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGI 161

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 95.0 bits (237), Expect = 2e-23
 Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 25/182 (13%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           RA + R  G P  L + ++ V  P   EVR+++   +L H DV   +    P    P +L
Sbjct: 2   RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           G +  GVV++VG GVE    GD V+      CG C  C + + N+C ++         R 
Sbjct: 62  GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRY---QILGEHRH 118

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTL 201
           GT                   + EY V+   ++     ++  + A  +     T  ++ +
Sbjct: 119 GT-------------------YAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTA-WQMV 158

Query: 202 VD 203
           VD
Sbjct: 159 VD 160

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 95.1 bits (237), Expect = 2e-23
 Identities = 48/215 (22%), Positives = 64/215 (29%), Gaps = 50/215 (23%)

Query: 2   PSSELVMDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEV-DPPKAGEVRIKILCTSLC 60
           P  E  +  K+     GK+    + + R P   + +EE+      K  E+ IK+    +C
Sbjct: 14  PRPEFKLGPKDIE---GKLTWLGSKVWRYPE--VRVEEVPEPRIEKPTEIIIKVKACGIC 68

Query: 61  HSDVTFW------RSTQPPMAVFPRILGHEAVGVVESVGGGVEE------VREGDLVLPV 108
            SDV             P +  FP  LGHE  GVV   G              G+ V   
Sbjct: 69  GSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAE 128

Query: 109 FQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV 168
               CG CR C     N C    N +      DG                    F EY  
Sbjct: 129 EMLWCGHCRPCAEGFPNHCE---NLNELGFNVDGA-------------------FAEYVK 166

Query: 169 VDVTHVVKI-------TPDIPLDIACL---LSCGV 193
           VD  +   +         D       L    S   
Sbjct: 167 VDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAY 201

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 84.6 bits (210), Expect = 1e-19
 Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 17/163 (10%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVE 90
               L             +VR K+L   +CHSD+   ++     +++P + GHE VG V 
Sbjct: 25  QSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGF-SMYPLVPGHEIVGEVT 83

Query: 91  SVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDL 149
            VG  V++V  GD V +    G C  C  C +   N C K +     S+  DGT  +   
Sbjct: 84  EVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYA-SIYHDGTITY--- 139

Query: 150 KGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            G           ++ + V +  ++++   ++PLD    L C 
Sbjct: 140 -G----------GYSNHMVANERYIIRFPDNMPLDGGAPLLCA 171

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 84.2 bits (209), Expect = 1e-19
 Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 21/188 (11%)

Query: 8   MDNKNASSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW 67
           +++ +    AG  I+   A S    +PL   +I    P   +V+I+I    +CHSD+   
Sbjct: 10  LESTSLYKKAGLKIKAVGAYS--AKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQV 67

Query: 68  RSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNI 126
           RS      V+P + GHE VG V +VG  VE+   GDLV +      C  C +C+    N 
Sbjct: 68  RSEWAG-TVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENY 126

Query: 127 CSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD--IPLD 184
           C       N S   D                  +  +++  VV   +V++I       L 
Sbjct: 127 CDHMTGTYN-SPTPDEPGH-------------TLGGYSQQIVVHERYVLRI-RHPQEQLA 171

Query: 185 IACLLSCG 192
               L C 
Sbjct: 172 AVAPLLCA 179

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 83.0 bits (206), Expect = 4e-19
 Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 17/163 (10%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVE 90
           P   L      +      +V I+I+C  +CH+D+   ++     + +P + GHE VG V 
Sbjct: 18  PSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM-SNYPMVPGHEVVGEVV 76

Query: 91  SVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDL 149
            VG  V +   GD+V +    G CG C  C+      C K +   N  +  +G       
Sbjct: 77  EVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYN-DVYINGQPTQ--- 132

Query: 150 KGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
            G           F + TVV    VVKI   + ++ A  L C 
Sbjct: 133 -G----------GFAKATVVHQKFVVKIPEGMAVEQAAPLLCA 164

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 82.3 bits (204), Expect = 7e-19
 Identities = 32/169 (18%), Positives = 52/169 (30%), Gaps = 26/169 (15%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG 94
           L + E  V      ++ ++ L  SL + D     +       FP +   +  GVVE+VG 
Sbjct: 41  LKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGK 100

Query: 95  GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVI 154
            V   R GD V+  F     +     + ++                 G            
Sbjct: 101 SVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETL------GGAHPGV----------- 143

Query: 155 HNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTLVD 203
                    +EY V+     V     +    A  L C   T  +  LV+
Sbjct: 144 --------LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTA-WFALVE 183

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 82.3 bits (204), Expect = 7e-19
 Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 15/163 (9%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVE 90
             +     +         +V I IL   +CHSD+    S      ++P I GHE  G+++
Sbjct: 13  KDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKE-GIYPMIPGHEIAGIIK 71

Query: 91  SVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDL 149
            VG GV++ + GD+V +  F   C  C+ CK  +   C+K V   +        + F D 
Sbjct: 72  EVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYD------CLDSFHD- 124

Query: 150 KGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
             E          ++   VVD  +V+ +  + PL+    L C 
Sbjct: 125 -NEPHM-----GGYSNNIVVDENYVISVDKNAPLEKVAPLLCA 161

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 81.4 bits (201), Expect = 2e-18
 Identities = 32/205 (15%), Positives = 58/205 (28%), Gaps = 40/205 (19%)

Query: 16  TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDV----------- 64
            A      +    +   K L + E+ +      EV + ++ +S+ ++ V           
Sbjct: 31  RAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTF 90

Query: 65  ------TFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRD 118
                                +LG +  GVV   G GV   + GD V+ V      E   
Sbjct: 91  HFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVI-VHPAHVDEQEP 149

Query: 119 CKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178
                  + ++   +        G                      EY VV  + ++   
Sbjct: 150 ATHGDGMLGTEQ--RAWGFETNFGG-------------------LAEYGVVRASQLLPKP 188

Query: 179 PDIPLDIACLLSCGVSTGNYRTLVD 203
             +  + A +      T  YR LV 
Sbjct: 189 AHLTWEEAAVSPLCAGTA-YRMLVS 212

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 78.3 bits (193), Expect = 3e-17
 Identities = 34/200 (17%), Positives = 58/200 (29%), Gaps = 43/200 (21%)

Query: 24  RAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDV---------------- 64
            A +      P   + ++++ V     GE  + ++ +S+ ++ V                
Sbjct: 44  FAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLER 103

Query: 65  TFWRSTQPPMAVFP-RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPK 123
               S        P  ++G +  GVV   G GV   + GD V+        E  D     
Sbjct: 104 YGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDG---- 159

Query: 124 SNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPL 183
                   + D    P      F    G             E  +V    ++     +  
Sbjct: 160 --------HNDTMLDPEQRIWGFETNFG----------GLAEIALVKSNQLMPKPDHLSW 201

Query: 184 DIACLLSCGVSTGNYRTLVD 203
           + A       ST  YR LV 
Sbjct: 202 EEAAAPGLVNSTA-YRQLVS 220

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 76.0 bits (188), Expect = 1e-16
 Identities = 45/174 (25%), Positives = 64/174 (36%), Gaps = 26/174 (14%)

Query: 25  AAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTF----WRSTQPPMAVFPRI 80
           A  S    K     + +  P    ++ IKI    +C SD+      W + + P+ V    
Sbjct: 11  AIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVV---- 66

Query: 81  LGHEAVGVVESVGGGVE-EVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM 138
            GHE VG V  +G      ++ G  V +      C EC  CK+     C+KFV   +   
Sbjct: 67  -GHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYS-QP 124

Query: 139 PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCG 192
             DG        G           +  Y  V    VV I  +IP  +A  L CG
Sbjct: 125 YEDGYVSQ----G----------GYANYVRVHEHFVVPIPENIPSHLAAPLLCG 164

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 24  RAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           RA +    G P   + ++ +E+   +  +VR+K+L   +  SD+   +     +   P +
Sbjct: 28  RALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAV 87

Query: 81  LGHEAVGVVESVGGGVEEVREGDLVLPVFQG 111
            G+E V  V +VG  V  ++ GD V+P   G
Sbjct: 88  GGNEGVAQVVAVGSNVTGLKPGDWVIPANAG 118

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 73.4 bits (181), Expect = 1e-15
 Identities = 38/175 (21%), Positives = 60/175 (34%), Gaps = 32/175 (18%)

Query: 33  KPLVMEEI------EVDPPKAGE--VRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHE 84
           K   M  I      E + P  G     ++ L  + C SD+               ILGHE
Sbjct: 2   KGFAMLSIGKVGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERH-NMILGHE 60

Query: 85  AVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTN 144
           AVG V  VG  V++ + GD V+           + +          +     S  +DG  
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGV- 119

Query: 145 RFRDLKGEVIHNVLNVSSFTEYTVV---DVTHVVKITPDIPLDIACLLSCGVSTG 196
                             F E+  V   D+     +  +IPL+ A ++   ++TG
Sbjct: 120 ------------------FGEFFHVNDADMNL-AHLPKEIPLEAAVMIPDMMTTG 155

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 43  DPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102
                  V +K++ T++C SD    R           +LGHE  G V   G  VE ++ G
Sbjct: 29  GKKIEHGVILKVVSTNICGSDQHMVRGRTTAQV--GLVLGHEITGEVIEKGRDVENLQIG 86

Query: 103 DLVLPVFQGDCGECRDCKSPKSNIC 127
           DLV   F   CG CR CK   + +C
Sbjct: 87  DLVSVPFNVACGRCRSCKEMHTGVC 111

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 71.8 bits (177), Expect = 3e-15
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 19  KIIRCRAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           K+I+         G P   L +E   ++P K  EV +++L   +  SD+           
Sbjct: 6   KLIQFHK-----FGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRI 60

Query: 76  VFPRILGHEAVGVVESVGGGVEEVREGDLVLP 107
             P I G+E VG+VE+VG  V     G  VLP
Sbjct: 61  PLPNIPGYEGVGIVENVGAFVSRELIGKRVLP 92

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 41  EVDPPK--------AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESV 92
            V  PK           V +K++ T++C SD   +R           +LGHE  G V   
Sbjct: 18  TVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPK--GHVLGHEITGEVVEK 75

Query: 93  GGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC 127
           G  VE +  GDLV   F   CG CR+CK  +S++C
Sbjct: 76  GSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVC 110

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 69.3 bits (170), Expect = 3e-14
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 14/109 (12%)

Query: 20  IIRCRAAISRIPGKP---LVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWR------ 68
           +I  +A +    G+P   L  +  E+D       EV +K L + +  SD+   +      
Sbjct: 1   MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60

Query: 69  ---STQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCG 114
              +T           G+E +  V  VG  V  +  GD V+P       
Sbjct: 61  PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGT 109

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 69.0 bits (169), Expect = 4e-14
 Identities = 31/172 (18%), Positives = 49/172 (28%), Gaps = 45/172 (26%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
            A       +  V            +V +++   ++  SD       +   A     LG 
Sbjct: 13  TALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSD---TS-MRGQFATPWAFLGT 68

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           +  G V +VG  V  ++ GD V        G                 N+     P  G 
Sbjct: 69  DYAGTVVAVGSDVTHIQVGDRV-------YG---------------AQNEMCPRTPDQGA 106

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
                              F++YTV       KI   +  + A  L  G+ST
Sbjct: 107 -------------------FSQYTVTRGRVWAKIPKGLSFEQAAALPAGIST 139

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 64.9 bits (159), Expect = 7e-13
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 31  PGKPLVM--EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
            G P V+   E     P   E++++     +   D    RS   P    P  LG EA G+
Sbjct: 10  HGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYI-RSGLYPPPSLPSGLGTEAAGI 68

Query: 89  VESVGGGVEEVREGDLV 105
           V  VG GV+ ++ GD V
Sbjct: 69  VSKVGSGVKHIKAGDRV 85

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 31  PGKPLVM--EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
            G P V+   + E + P    V ++     L   D  + RS   P    P  LG E  GV
Sbjct: 10  VGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYY-RSGLYPAPFLPSGLGAEGAGV 68

Query: 89  VESVGGGVEEVREGDLV 105
           VE+VG  V   + GD V
Sbjct: 69  VEAVGDEVTRFKVGDRV 85

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRS--TQPPMAVFPRIL 81
            AA+      P V+ ++    P  G+V ++I  +     D    R+          P IL
Sbjct: 9   IAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDA-KIRAGEAPHAQQPLPAIL 67

Query: 82  GHEAVGVVESVGGGVEEVREGDLV 105
           G +  G V +VG  V+  R GD V
Sbjct: 68  GMDLAGTVVAVGPEVDSFRVGDAV 91

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 24  RAAISRIPGKPLVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWRSTQPPMA-----V 76
           +A      G P V++ ++   P  +  ++ IK+   SL   D    R+    +A      
Sbjct: 8   KAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKT-RNGSGFVAKKLKNN 66

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLV 105
            P  LG++  G V  +G  V  V  GD V
Sbjct: 67  LPSGLGYDFSGEVIELGSDVNNVNIGDKV 95

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 31  PGKPLVM--EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRS---TQPPMAVFPRILGHEA 85
            G P     EE++V  P  G+VR++     +   D    R+       +   P ++G EA
Sbjct: 10  KGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYH-RAGIPHPLVVGEPPIVVGFEA 68

Query: 86  VGVVESVGGGVEEVREGDLV 105
             VVE VG GV +   G+ V
Sbjct: 69  AAVVEEVGPGVTDFTVGERV 88

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 62.2 bits (152), Expect = 7e-12
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 9/89 (10%)

Query: 19  KIIRCRAAISRIPGKPLVM--EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
           K+I          G   V+  E+  V      E+ IK   T + + +  F R    P   
Sbjct: 10  KVILIDE-----IGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYF-RKGIYPCE- 62

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLV 105
            P +LG EA G V + G GV     GD V
Sbjct: 63  KPYVLGREASGTVVAKGKGVTNFEVGDQV 91

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 59.9 bits (146), Expect = 5e-11
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 8/90 (8%)

Query: 19  KIIRCRAAISRIPGKPLVME---EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           + +R         G P V++   +I V  PK  +V IK+    +   +      T     
Sbjct: 31  RAVRVFE-----FGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKP 85

Query: 76  VFPRILGHEAVGVVESVGGGVEEVREGDLV 105
           + P   G +  GV+E+VG      ++GD V
Sbjct: 86  LLPYTPGSDVAGVIEAVGDNASAFKKGDRV 115

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 59.5 bits (145), Expect = 6e-11
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVE 90
               + +  +++    A ++ ++     +   D  F     P       + G +  GV+ 
Sbjct: 13  KTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKF-IKANPINWSNGHVPGVDGAGVIV 71

Query: 91  SVGGGVEEVREGDLV 105
            VG  V+    G  V
Sbjct: 72  KVGAKVDSKMLGRRV 86

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           RA +    G    L +    +  P+ GE++I++    L   D+   +         P + 
Sbjct: 5   RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVP 64

Query: 82  GHEAVGVVESVGGGVEEVREGDLV 105
           G E  G+VE++G  V+    GD V
Sbjct: 65  GFECSGIVEALGDSVKGYEIGDRV 88

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 31  PGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVE 90
               L    I V  P   +V IK+   S+  SDV F +       V  R  G E VG + 
Sbjct: 33  MEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGFEGVGTIV 92

Query: 91  SVGGGVE-EVREGDLV 105
           + G     +   G  V
Sbjct: 93  AGGDEPYAKSLVGKRV 108

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 34  PLVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVES 91
              + +IE+  P     ++ +++   S+   D    R + PP     +++G++A G+V +
Sbjct: 37  DASLLDIELPKPAPAGHDILVEVKAVSVNPVD-YKVRRSTPPDGTDWKVIGYDAAGIVSA 95

Query: 92  VGGGVEEVREGDLV 105
           VG  V   R GD V
Sbjct: 96  VGPDVTLFRPGDEV 109

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 57.2 bits (139), Expect = 4e-10
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           R    +  G P  +V+ +  +     GEV ++     +   D+   + + PP      IL
Sbjct: 30  RFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPIL 89

Query: 82  GHEAVGVVESVGGGVEEVREGDLV 105
           G E  G +  VG GV     GD V
Sbjct: 90  GLELSGEIVGVGPGVSGYAVGDKV 113

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 32  GKPLVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVV 89
               + +   +D P  K  E+ +KI   S+   D T  R         PR+LG +A+GVV
Sbjct: 15  SDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVD-TKQRLMDVSK--APRVLGFDAIGVV 71

Query: 90  ESVGGGVEEVREGDLV 105
           ESVG  V    +GD+V
Sbjct: 72  ESVGNEVTMFNQGDIV 87

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 18/117 (15%), Positives = 30/117 (25%), Gaps = 32/117 (27%)

Query: 19  KIIRCRAAISRIPGKPLVM--EEIEVDPPKAGEVRIKILCTSLCHSDVTF---------- 66
             ++ R+ I       L +  + I+   P   EV I+I  + L  SD+            
Sbjct: 4   SALQLRSRIK--SSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTA 61

Query: 67  ------------------WRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLV 105
                                +          +G+E  GVV   G            
Sbjct: 62  KASGTAERPIVTARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKT 118

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 1/94 (1%)

Query: 19  KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFP 78
           + +              +  +  V  P  G++ ++     +  SD+ +      P    P
Sbjct: 25  QKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPP 84

Query: 79  RILGHEAVGVVESVGGGV-EEVREGDLVLPVFQG 111
             +G E +G V ++G         G  V  +  G
Sbjct: 85  FDIGFEGIGEVVALGLSASARYTVGQAVAYMAPG 118

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
            A     PG P  L ++E+    P  GEV +K+  ++L  +D+   +    P      IL
Sbjct: 24  LAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNIL 83

Query: 82  GHEAVGVVESVGGGVE-EVREGDLV 105
           G EA G V  +G G +   + GD  
Sbjct: 84  GLEASGHVAELGPGCQGHWKIGDTA 108

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 54.1 bits (131), Expect = 5e-09
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 24  RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A  ++    P  LV  ++E        V + +    +C  D    +         P + 
Sbjct: 23  KAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVP 82

Query: 82  GHEAVGVVESVGGGVEEVREGDLV 105
           G E  GVV S   G   ++ GD V
Sbjct: 83  GIETAGVVRSAPEGS-GIKPGDRV 105

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 53.2 bits (128), Expect = 9e-09
 Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 18/100 (18%)

Query: 24  RAAISRIPGKPLVMEEIEV----DPPKAGEVRIKILCTSLCHSDV--------------T 65
            A +    GK  V+   +           EV +K+   S+   DV               
Sbjct: 23  MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKR 82

Query: 66  FWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLV 105
                +     FP  LG +  GVV   G  V+  + GD V
Sbjct: 83  DPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEV 122

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 47.1 bits (113), Expect = 9e-07
 Identities = 18/67 (26%), Positives = 29/67 (43%)

Query: 24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
          +A + +  G PL + ++     + GEV +++    L  +D              P I G 
Sbjct: 2  KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGM 61

Query: 84 EAVGVVE 90
          E VGVVE
Sbjct: 62 EVVGVVE 68

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 22/82 (26%), Positives = 28/82 (34%), Gaps = 14/82 (17%)

Query: 35  LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVF-----PRILGHEAVGVV 89
           LV E     P   GEVRI +    +   D          +           LG E  GVV
Sbjct: 226 LVDEPTATAPLGDGEVRIAMRAAGVNFRDA---------LIALGMYPGVASLGSEGAGVV 276

Query: 90  ESVGGGVEEVREGDLVLPVFQG 111
              G GV  +  GD V+ +   
Sbjct: 277 VETGPGVTGLAPGDRVMGMIPK 298

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	208
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	99.98
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	99.98
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	99.98
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	99.98
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	99.98
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	99.97
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	99.97
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	99.97
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	99.97
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	99.97
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	99.97
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	99.97
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	99.97
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	99.97
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	99.97
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.97
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	99.97
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.97
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.96
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	99.96
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	99.96
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	99.96
4eye_A	342	Probable oxidoreductase; structural genomics, niai	99.95
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	99.95
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	99.95
3gms_A	340	Putative NADPH:quinone reductase; structural genom	99.95
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	99.95
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	99.95
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	99.94
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	99.94
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	99.94
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	99.94
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	99.94
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	99.94
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	99.94
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	99.94
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	99.94
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	99.94
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	99.93
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	99.93
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	99.93
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	99.93
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	99.93
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	99.93
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	99.92
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	99.92
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.9
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.89
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.89
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.86
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.83
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.82
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.77
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.08
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	92.34
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	87.78
1we3_O	100	CPN10(groes); chaperonin, chaperone, groel, HSP60,	82.16
1p3h_A	99	10 kDa chaperonin; beta barrel, acidic cluster, fl	80.79

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=8.3e-37  Score=265.96  Aligned_cols=184  Identities=48%  Similarity=0.898  Sum_probs=159.8

Q ss_pred             cccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCC
Q 028493           17 AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (208)
Q Consensus        17 ~~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v   96 (208)
                      ..+|++|||+++++++++|++++++.|+|+++||||||++++||++|++.++|.++. ..+|.++|||++|+|+++|++|
T Consensus         3 ~~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~v   81 (378)
T 3uko_A            3 QGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGV   81 (378)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEECTTC
T ss_pred             cccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCC-CCCCccCCccceEEEEEeCCCC
Confidence            457889999999999988999999999999999999999999999999999998654 5789999999999999999999


Q ss_pred             CCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCC-CCCCcccccCCCceeeeccCcccccceEEEecCcEE
Q 028493           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (208)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~  175 (208)
                      ++|++||||+..+..+|+.|++|++|++|+|.........|.. .+|..+|. ..|....++.+.|+|+||++++.+.++
T Consensus        82 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~  160 (378)
T 3uko_A           82 TEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFS-VNGKPIYHFMGTSTFSQYTVVHDVSVA  160 (378)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEE
T ss_pred             CcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccc-cCCcccccccCCcceEeEEEechhheE
Confidence            9999999999999999999999999999999987653223322 33433333 455556666677899999999999999


Q ss_pred             EcCCCCCccceeeccchhHHHhheeee
Q 028493          176 KITPDIPLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       176 ~ip~~~~~~~aa~l~~~~~ta~~al~~  202 (208)
                      ++|+++++++|+++++++.|||++++.
T Consensus       161 ~iP~~~~~~~aa~l~~~~~ta~~al~~  187 (378)
T 3uko_A          161 KIDPTAPLDKVCLLGCGVPTGLGAVWN  187 (378)
T ss_dssp             ECCTTSCHHHHGGGGTHHHHHHHHHHT
T ss_pred             ECCCCCCHHHhhhhhhhHHHHHHHHHh
Confidence            999999999999999999999998743

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=9.9e-36  Score=258.61  Aligned_cols=184  Identities=49%  Similarity=0.835  Sum_probs=151.2

Q ss_pred             ccccccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeC
Q 028493           14 SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVG   93 (208)
Q Consensus        14 ~~~~~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG   93 (208)
                      |++...|++|||+++++++.++++++++.|+|+++||||||++++||++|++.+.|.++  ..+|.++|||++|+|+++|
T Consensus         1 ~~~~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~P~v~GhE~~G~V~~vG   78 (373)
T 1p0f_A            1 MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP--SKFPVILGHEAVGVVESIG   78 (373)
T ss_dssp             -CCTTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC--CCSSBCCCCCEEEEEEEEC
T ss_pred             CcccCCcceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC--CCCCcccCcCceEEEEEEC
Confidence            45666789999999999887799999999999999999999999999999999998765  3679999999999999999


Q ss_pred             CCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCc
Q 028493           94 GGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH  173 (208)
Q Consensus        94 ~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~  173 (208)
                      ++|++|++||||+..+..+|++|++|++|++|+|++.+...+.|...+|..++. ..|....++...|+|+||+++|.+.
T Consensus        79 ~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~  157 (373)
T 1p0f_A           79 AGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIA  157 (373)
T ss_dssp             TTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEETTS
T ss_pred             CCCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccc-cCCcccccccCCccceeEEEEchhh
Confidence            999999999999999989999999999999999998654211122222211111 1122222222346999999999999


Q ss_pred             EEEcCCCCCccceeeccchhHHHhheee
Q 028493          174 VVKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       174 v~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++++|++++++ ||++++++.|||+++.
T Consensus       158 ~~~iP~~l~~~-aa~l~~~~~ta~~~l~  184 (373)
T 1p0f_A          158 VAKIDPKAPLE-SCLIGCGFATGYGAAV  184 (373)
T ss_dssp             EEEECTTCCGG-GGGGGTHHHHHHHHHH
T ss_pred             EEECCCCCChh-hhhhhhHHHHHHHHHH
Confidence            99999999999 9999999999998874

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=1.9e-35  Score=256.91  Aligned_cols=183  Identities=47%  Similarity=0.810  Sum_probs=151.0

Q ss_pred             ccccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCC
Q 028493           16 TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (208)
Q Consensus        16 ~~~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~   95 (208)
                      +..+|++|||+++++++.++++++++.|+|+++||||||++++||++|++.+.|.++.  .+|.++|||++|+|+++|++
T Consensus         2 ~~~~~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~P~v~GhE~~G~V~~vG~~   79 (374)
T 2jhf_A            2 TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT--PLPVIAGHEAAGIVESIGEG   79 (374)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--CSSBCCCCSEEEEEEEECTT
T ss_pred             CCCCceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCC--CCCcccCcCceEEEEEECCC
Confidence            4567889999999999877999999999999999999999999999999999997654  37999999999999999999


Q ss_pred             CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEE
Q 028493           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (208)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~  175 (208)
                      |++|++||||+..+..+|+.|++|++|++|+|++.+...+.|...+|..++. ..|....++...|+|+||+++|.+.++
T Consensus        80 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~  158 (374)
T 2jhf_A           80 VTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVA  158 (374)
T ss_dssp             CCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEEGGGEE
T ss_pred             CCCCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCccccc-ccccccccccCCccCeeEEEEchHHeE
Confidence            9999999999999889999999999999999998754211122222211110 111112222234699999999999999


Q ss_pred             EcCCCCCccceeeccchhHHHhheee
Q 028493          176 KITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       176 ~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++|+++++++||++++++.|||+++.
T Consensus       159 ~iP~~l~~~~aa~l~~~~~ta~~~l~  184 (374)
T 2jhf_A          159 KIDAASPLEKVCLIGCGFSTGYGSAV  184 (374)
T ss_dssp             ECCTTCCHHHHGGGGTHHHHHHHHHH
T ss_pred             ECCCCCCHHHhhhhccHHHHHHHHHH
Confidence            99999999999999999999998874

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.6e-35  Score=255.18  Aligned_cols=183  Identities=47%  Similarity=0.850  Sum_probs=151.5

Q ss_pred             ccccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhh-hhcCCCCCCCCCCceeccceeEEEEEeCC
Q 028493           16 TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVT-FWRSTQPPMAVFPRILGHEAVGVVESVGG   94 (208)
Q Consensus        16 ~~~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~-~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~   94 (208)
                      |..+|++|||++++++++++++++++.|+|+++||||||++++||++|++ .+.|.++  ..+|.++|||++|+|+++|+
T Consensus         2 ~~~~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~--~~~P~v~GhE~~G~V~~vG~   79 (374)
T 1cdo_A            2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK--DGFPVVLGHEGAGIVESVGP   79 (374)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT--TSCSEECCCCEEEEEEEECT
T ss_pred             CCCCcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC--CCCCcccCccceEEEEEECC
Confidence            45678899999999988779999999999999999999999999999999 8888765  36799999999999999999


Q ss_pred             CCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcE
Q 028493           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (208)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v  174 (208)
                      +|++|++||||+..+..+|+.|++|++|++|+|++.+...+.|...+|..++. ..|....++...|+|+||+++|.+.+
T Consensus        80 ~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~  158 (374)
T 1cdo_A           80 GVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAV  158 (374)
T ss_dssp             TCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEE-ETTEEEEEGGGTCCSBSEEEEEGGGE
T ss_pred             CCccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccc-cCCcccccccCCccceeEEEEchhhe
Confidence            99999999999999889999999999999999998764211232222321111 11222222333469999999999999


Q ss_pred             EEcCCCCCccceeeccchhHHHhheee
Q 028493          175 VKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       175 ~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++|+++++++||++++++.|||+++.
T Consensus       159 ~~~P~~~~~~~aa~l~~~~~ta~~~l~  185 (374)
T 1cdo_A          159 AKIDPSAPLDTVCLLGCGVSTGFGAAV  185 (374)
T ss_dssp             EECCTTCCHHHHGGGGTHHHHHHHHHH
T ss_pred             EECCCCCCHHHHhhhccHHHHHHHHHH
Confidence            999999999999999999999998874

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=2.8e-35  Score=255.60  Aligned_cols=182  Identities=47%  Similarity=0.870  Sum_probs=149.5

Q ss_pred             ccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC
Q 028493           18 GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (208)
Q Consensus        18 ~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~   97 (208)
                      ..|++|||++++++++++++++++.|+|+++||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|++|+
T Consensus         2 ~~p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~   80 (373)
T 2fzw_A            2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGHLGAGIVESVGEGVT   80 (373)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTT-CCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CCccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCC-CCCCccccccccEEEEEECCCCC
Confidence            46788999999998877999999999999999999999999999999999987653 46799999999999999999999


Q ss_pred             CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      +|++||||+..+..+|+.|++|+.|++|+|++.+...+.|...+|..++. ..|....++...|+|+||+++|.+.++++
T Consensus        81 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~i  159 (373)
T 2fzw_A           81 KLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKI  159 (373)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCccccc-ccccccccccCCccceeEEEEchhheEEC
Confidence            99999999999889999999999999999987643100122112211111 11222222223469999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhheee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      |+++++++||++++++.|||+++.
T Consensus       160 P~~l~~~~aa~l~~~~~ta~~~l~  183 (373)
T 2fzw_A          160 DPLAPLDKVCLLGCGISTGYGAAV  183 (373)
T ss_dssp             CTTSCHHHHGGGGTHHHHHHHHHH
T ss_pred             CCCCCHHHHhhhccHHHHHHHHHH
Confidence            999999999999999999998874

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=1.3e-34  Score=251.90  Aligned_cols=182  Identities=42%  Similarity=0.801  Sum_probs=147.7

Q ss_pred             cccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCC
Q 028493           17 AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (208)
Q Consensus        17 ~~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v   96 (208)
                      ...|++|||+++++++.++++++++.|+|+++||||||++++||++|++.+.|. +. ..+|.++|||++|+|+++|++|
T Consensus         3 ~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~-~~~P~v~GhE~~G~V~~vG~~v   80 (376)
T 1e3i_A            3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KK-ALFPVVLGHECAGIVESVGPGV   80 (376)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SC-CCSSBCCCCEEEEEEEEECTTC
T ss_pred             CCCChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CC-CCCCcccCccccEEEEEECCCC
Confidence            346789999999998867999999999999999999999999999999999886 32 4679999999999999999999


Q ss_pred             CCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCc----cCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC
Q 028493           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFV----NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT  172 (208)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~----~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~  172 (208)
                      ++|++||||+..+...|++|++|+.|++|+|+..+    ...+.|...+|..++. ..|....++...|+|+||+++|..
T Consensus        81 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~  159 (376)
T 1e3i_A           81 TNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEA  159 (376)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGG
T ss_pred             ccCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccc-cCCcccccccCCccceeEEEeccc
Confidence            99999999999998999999999999999998764    1000122212211110 011111122223599999999999


Q ss_pred             cEEEcCCCCCccceeeccchhHHHhheee
Q 028493          173 HVVKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       173 ~v~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      .++++|+++++++|+++++++.|||+++.
T Consensus       160 ~~~~iP~~l~~~~aa~l~~~~~ta~~~l~  188 (376)
T 1e3i_A          160 NLARVDDEANLERVCLIGCGFSSGYGAAI  188 (376)
T ss_dssp             GEEECCTTCCHHHHGGGGTHHHHHHHHHH
T ss_pred             cEEECCCCCCHHHhhhhccHHHHHHHHHH
Confidence            99999999999999999999999998874

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-34  Score=244.72  Aligned_cols=161  Identities=24%  Similarity=0.376  Sum_probs=143.8

Q ss_pred             cceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC
Q 028493           19 KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      +|.+|||+++++++.++++++++.|+|+++||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|++|++
T Consensus         2 ~p~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (347)
T 2hcy_A            2 IPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKG   81 (347)
T ss_dssp             CCSEEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CCcccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCC
Confidence            46789999999998669999999999999999999999999999999999876543467999999999999999999999


Q ss_pred             CCCCCEEeeeccC-CCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           99 VREGDLVLPVFQG-DCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        99 ~~vGd~V~~~~~~-~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      |++||||+..+.. .|+.|++|+.|++|+|+....   .|...+|                   +|+||+++|.+.++++
T Consensus        82 ~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~i  139 (347)
T 2hcy_A           82 WKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL---SGYTHDG-------------------SFQQYATADAVQAAHI  139 (347)
T ss_dssp             CCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEETTTSEEE
T ss_pred             CcCCCEEEEecCCCCCCCChhhhCCCcccCccccc---cccCCCC-------------------cceeEEEeccccEEEC
Confidence            9999999986643 599999999999999987754   3434445                   9999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhheee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      |+++++++|++++++++|||+++.
T Consensus       140 P~~~~~~~aa~l~~~~~ta~~~l~  163 (347)
T 2hcy_A          140 PQGTDLAQVAPILCAGITVYKALK  163 (347)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhhhHHHHHHHHH
Confidence            999999999999999999999873

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=4.3e-34  Score=245.33  Aligned_cols=157  Identities=32%  Similarity=0.533  Sum_probs=144.0

Q ss_pred             eeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        22 ~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      +|||+++++++.+|++++++.|+|+++||||||++++||++|++.+.|.++....+|.++|||++|+|+++|++|++|++
T Consensus         2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~v   81 (340)
T 3s2e_A            2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKE   81 (340)
T ss_dssp             EEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCT
T ss_pred             ceEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCC
Confidence            69999999988789999999999999999999999999999999999987654578999999999999999999999999


Q ss_pred             CCEEe-eeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          102 GDLVL-PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       102 Gd~V~-~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      ||||+ ..+...|+.|.+|++|++|+|.+...   .|...+|                   +|+||+++|.+.++++|++
T Consensus        82 GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  139 (340)
T 3s2e_A           82 GDRVGVPWLYSACGYCEHCLQGWETLCEKQQN---TGYSVNG-------------------GYGEYVVADPNYVGLLPDK  139 (340)
T ss_dssp             TCEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEECTTTSEECCTT
T ss_pred             CCEEEecCCCCCCCCChHHhCcCcccCccccc---cCCCCCC-------------------cceeEEEechHHEEECCCC
Confidence            99995 45567899999999999999998765   4444555                   9999999999999999999


Q ss_pred             CCccceeeccchhHHHhhee
Q 028493          181 IPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al  200 (208)
                      +++++||.+++++.|||+++
T Consensus       140 ~~~~~aa~l~~~~~ta~~~l  159 (340)
T 3s2e_A          140 VGFVEIAPILCAGVTVYKGL  159 (340)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH
T ss_pred             CCHHHhhcccchhHHHHHHH
Confidence            99999999999999999987

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=7e-34  Score=244.83  Aligned_cols=168  Identities=23%  Similarity=0.363  Sum_probs=141.7

Q ss_pred             ceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493           20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        20 ~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      +++|||+++.+++++|++++++.|+|+++||||||++++||++|++.+.|.++. .++|.++|||++|+|+++|++|++|
T Consensus         2 ~m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~V~~vG~~v~~~   80 (348)
T 3two_A            2 RVQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKE-GIYPMIPGHEIAGIIKEVGKGVKKF   80 (348)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSC-CCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             ceEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCC-CCCCeecCcceeEEEEEECCCCCCC
Confidence            367999999998878999999999999999999999999999999999998765 5789999999999999999999999


Q ss_pred             CCCCEEeeecc-CCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493          100 REGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (208)
Q Consensus       100 ~vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip  178 (208)
                      ++||+|++.+. ..|+.|++|+.|++|+|. ...   .+......   . ..     .....|+|+||+++|.+.++++|
T Consensus        81 ~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~---~~~~~~~~---~-~~-----~~~~~G~~aey~~v~~~~~~~iP  147 (348)
T 3two_A           81 KIGDVVGVGCFVNSCKACKPCKEHQEQFCT-KVV---FTYDCLDS---F-HD-----NEPHMGGYSNNIVVDENYVISVD  147 (348)
T ss_dssp             CTTCEEEECSEEECCSCSHHHHTTCGGGCT-TCE---ESSSSEEG---G-GT-----TEECCCSSBSEEEEEGGGCEECC
T ss_pred             CCCCEEEEeCCcCCCCCChhHhCCCcccCc-ccc---cccccccc---c-cc-----CCcCCccccceEEechhhEEECC
Confidence            99999988654 689999999999999998 322   11111100   0 00     00112499999999999999999


Q ss_pred             CCCCccceeeccchhHHHhheee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++||.+++++.|||+++.
T Consensus       148 ~~~~~~~aa~l~~~~~ta~~~l~  170 (348)
T 3two_A          148 KNAPLEKVAPLLCAGITTYSPLK  170 (348)
T ss_dssp             TTSCHHHHGGGGTHHHHHHHHHH
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHH
Confidence            99999999999999999999873

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.9e-34  Score=246.81  Aligned_cols=179  Identities=27%  Similarity=0.614  Sum_probs=144.3

Q ss_pred             ceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493           20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        20 ~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      +++|||+++++++.++++++++.|+|+++||||||++++||++|++.+.|.++.  .+|.++|||++|+|+++|++|++|
T Consensus         4 ~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~P~v~GhE~~G~V~~vG~~v~~~   81 (371)
T 1f8f_A            4 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV--PLPAVLGHEGSGIIEAIGPNVTEL   81 (371)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             cccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCCC--CCCcccCcccceEEEEeCCCCCCC
Confidence            457999999998867999999999999999999999999999999999997654  679999999999999999999999


Q ss_pred             CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCcee-eeccCcccccceEEEecCcEEEcC
Q 028493          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVI-HNVLNVSSFTEYTVVDVTHVVKIT  178 (208)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~-~~~~~~g~~~e~~~v~~~~v~~ip  178 (208)
                      ++||||+..+ ..|++|++|+.|++|+|++.......|...+|..++....|... .++...|+|+||+++|.+.++++|
T Consensus        82 ~~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP  160 (371)
T 1f8f_A           82 QVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVT  160 (371)
T ss_dssp             CTTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEEC
T ss_pred             CCCCEEEecC-CCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheEECC
Confidence            9999999998 99999999999999999876521011111122111100000000 011223599999999999999999


Q ss_pred             CCCCccceeeccchhHHHhheee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++||++++++.|||+++.
T Consensus       161 ~~~~~~~aa~l~~~~~ta~~al~  183 (371)
T 1f8f_A          161 KDVPIELLGPLGCGIQTGAGACI  183 (371)
T ss_dssp             TTSCGGGTGGGGTHHHHHHHHHH
T ss_pred             CCCCHHHHHHhcchHHHHHHHHH
Confidence            99999999999999999999874

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=2.6e-33  Score=243.60  Aligned_cols=157  Identities=20%  Similarity=0.371  Sum_probs=143.0

Q ss_pred             ccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC
Q 028493           18 GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (208)
Q Consensus        18 ~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~   97 (208)
                      .+|++|||+++++++. +++++++.|+|+++||+|||.+++||++|++.+.|.++.  .+|.++|||++|+|+++|++|+
T Consensus        19 ~~p~~mkA~v~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~p~v~G~e~~G~V~~vG~~v~   95 (370)
T 4ej6_A           19 YFQSMMKAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPS--TPPVTLGHEFCGIVVEAGSAVR   95 (370)
T ss_dssp             --CCEEEEEEEEETTE-EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSEECCCSEEEEEEEECTTCC
T ss_pred             ccchheEEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCCC--CCCeecCcceEEEEEEECCCCC
Confidence            4778899999999876 999999999999999999999999999999999998754  7899999999999999999999


Q ss_pred             CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      +|++||+|++.+...|+.|++|+.|++|+|.+...   .|...+|                   +|+||++++...++++
T Consensus        96 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~~  153 (370)
T 4ej6_A           96 DIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRA---IGIHRDG-------------------GFAEYVLVPRKQAFEI  153 (370)
T ss_dssp             SSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGEEEE
T ss_pred             CCCCCCEEEECCCCCCCCChHHhCcCcccCCCccc---cCCCCCC-------------------cceEEEEEchhhEEEC
Confidence            99999999999999999999999999999998764   4544555                   9999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhhee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      |+++++++|| +...+.|||+++
T Consensus       154 P~~~~~~~aa-l~~~~~ta~~~l  175 (370)
T 4ej6_A          154 PLTLDPVHGA-FCEPLACCLHGV  175 (370)
T ss_dssp             CTTSCTTGGG-GHHHHHHHHHHH
T ss_pred             CCCCCHHHHh-hhhHHHHHHHHH
Confidence            9999999987 667889999886

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.3e-33  Score=244.38  Aligned_cols=161  Identities=25%  Similarity=0.375  Sum_probs=140.5

Q ss_pred             cceeeeeEEEecCCCCeEEEEeecCC-CCCCeEEEEEEeeeCChhhhhhhcCCCC--CCCCCCceeccceeEEEEEeCCC
Q 028493           19 KIIRCRAAISRIPGKPLVMEEIEVDP-PKAGEVRIKILCTSLCHSDVTFWRSTQP--PMAVFPRILGHEAVGVVESVGGG   95 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~~l~~~~~~~p~-~~~~eVlVkV~a~~l~~sD~~~~~g~~~--~~~~~p~~~G~e~~G~Vv~vG~~   95 (208)
                      .+++|||+++++++.++++++++.|+ |+++||||||++++||++|++.+.|.++  ....+|.++|||++|+|+++|++
T Consensus        12 ~~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~   91 (359)
T 1h2b_A           12 GVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEG   91 (359)
T ss_dssp             -----CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTT
T ss_pred             ChhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEECCC
Confidence            46789999999988669999999999 9999999999999999999999998764  11367999999999999999999


Q ss_pred             CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEE
Q 028493           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (208)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~  175 (208)
                      |++|++||||+.....+|+.|++|+.|++|+|++...   .|...+|                   +|+||+++|.+.++
T Consensus        92 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~  149 (359)
T 1h2b_A           92 VEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLNIDG-------------------GFAEFMRTSHRSVI  149 (359)
T ss_dssp             CCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTTBCC-------------------SSBSEEEECGGGEE
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccc---cccCCCC-------------------cccceEEechHhEE
Confidence            9999999999888888999999999999999987653   3444445                   99999999999999


Q ss_pred             EcCCCCCcccee---eccchhHHHhheee
Q 028493          176 KITPDIPLDIAC---LLSCGVSTGNYRTL  201 (208)
Q Consensus       176 ~ip~~~~~~~aa---~l~~~~~ta~~al~  201 (208)
                      ++|+++++++|+   .+++++.|||+++.
T Consensus       150 ~iP~~~~~~~aa~~~~l~~~~~ta~~al~  178 (359)
T 1h2b_A          150 KLPKDISREKLVEMAPLADAGITAYRAVK  178 (359)
T ss_dssp             ECCTTCCHHHHHHTGGGGTHHHHHHHHHH
T ss_pred             ECCCCCCHHHHhhccchhhhHHHHHHHHH
Confidence            999999999998   78888999999874

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=4.3e-33  Score=239.28  Aligned_cols=157  Identities=31%  Similarity=0.490  Sum_probs=140.9

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||+++++++.++++++++.|+|+++||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++|++|++|++|
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vG   80 (339)
T 1rjw_A            1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (339)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCC
Confidence            79999999886699999999999999999999999999999999998765434679999999999999999999999999


Q ss_pred             CEEeeeccC-CCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          103 DLVLPVFQG-DCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       103 d~V~~~~~~-~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      |||+..+.. .|+.|++|+.|++|+|+....   .|...+|                   +|+||+++|...++++|+++
T Consensus        81 drV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~~P~~~  138 (339)
T 1rjw_A           81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYSVDG-------------------GYAEYCRAAADYVVKIPDNL  138 (339)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGCEECCTTS
T ss_pred             CEEEEecCCCCCCCCchhhCcCcccCCCcce---eecCCCC-------------------cceeeEEechHHEEECCCCC
Confidence            999986643 599999999999999987764   3434445                   99999999999999999999


Q ss_pred             CccceeeccchhHHHhheee
Q 028493          182 PLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++++||.+++++.|||+++.
T Consensus       139 ~~~~aa~l~~~~~ta~~~l~  158 (339)
T 1rjw_A          139 SFEEAAPIFCAGVTTYKALK  158 (339)
T ss_dssp             CHHHHGGGGTHHHHHHHHHH
T ss_pred             CHHHhhhhhhhHHHHHHHHH
Confidence            99999999999999999873

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=5.1e-33  Score=239.02  Aligned_cols=158  Identities=27%  Similarity=0.495  Sum_probs=143.1

Q ss_pred             eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      |||+++++++.+  |++++++.|+|+++||||||++++||++|++.+.|.++....+|.++|||++|+|+++|++|++|+
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA   80 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred             CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence            799999998865  899999999999999999999999999999999987654346799999999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||||+..+...|+.|++|+.|++|+|+....   .|...+|                   +|+||+++|.+.++++|++
T Consensus        81 vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~~~P~~  138 (343)
T 2eih_A           81 PGDEVVINPGLSCGRCERCLAGEDNLCPRYQI---LGEHRHG-------------------TYAEYVVLPEANLAPKPKN  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTTSSCC-------------------SSBSEEEEEGGGEEECCTT
T ss_pred             CCCEEEECCCCCcccchhhccCcccccccccc---cCcCCCc-------------------cceeEEEeChHHeEECCCC
Confidence            99999999989999999999999999998764   3433345                   9999999999999999999


Q ss_pred             CCccceeeccchhHHHhheeee
Q 028493          181 IPLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~~  202 (208)
                      +++++|++++++++|||+++..
T Consensus       139 ~~~~~aa~l~~~~~ta~~al~~  160 (343)
T 2eih_A          139 LSFEEAAAIPLTFLTAWQMVVD  160 (343)
T ss_dssp             SCHHHHHHSHHHHHHHHHHHTT
T ss_pred             CCHHHHhhchhhHHHHHHHHHH
Confidence            9999999899999999999853

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=4.3e-33  Score=241.06  Aligned_cols=163  Identities=23%  Similarity=0.319  Sum_probs=140.5

Q ss_pred             cceeeeeEEEecCCCCeEEEE--eecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCC
Q 028493           19 KIIRCRAAISRIPGKPLVMEE--IEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~~l~~~~--~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v   96 (208)
                      +|.+|||+++++++.++++++  ++.|+|+++||||||++++||++|++.+.|.++. .++|.++|||++|+|+++|++|
T Consensus         3 ~p~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~GhE~~G~V~~vG~~v   81 (360)
T 1piw_A            3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN-MKMPLVVGHEIVGKVVKLGPKS   81 (360)
T ss_dssp             TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSC-CCSSEECCCCEEEEEEEECTTC
T ss_pred             CChheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCC-CCCCcccCcCceEEEEEeCCCC
Confidence            356799999999886699999  9999999999999999999999999999987654 4679999999999999999999


Q ss_pred             C-CCCCCCEEeeec-cCCCCCCccccCCCCCCCCCC-ccCCC---CCCCCCCCcccccCCCceeeeccCcccccceEEEe
Q 028493           97 E-EVREGDLVLPVF-QGDCGECRDCKSPKSNICSKF-VNKDN---QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD  170 (208)
Q Consensus        97 ~-~~~vGd~V~~~~-~~~c~~c~~~~~g~~~~c~~~-~~~~~---~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~  170 (208)
                      + +|++||||+..+ ..+|+.|++|+.|++|+|+.. .....   .|...+|                   +|+||+++|
T Consensus        82 ~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G-------------------~~aey~~v~  142 (360)
T 1piw_A           82 NSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQG-------------------GYANYVRVH  142 (360)
T ss_dssp             CSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCC-------------------SSBSEEEEE
T ss_pred             CCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCC-------------------cceeEEEEc
Confidence            9 999999996543 468999999999999999876 21000   0222234                   999999999


Q ss_pred             cCcEEEcCCCCCccceeeccchhHHHhheee
Q 028493          171 VTHVVKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       171 ~~~v~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      .+.++++|+++++++||.+++++.|||+++.
T Consensus       143 ~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~  173 (360)
T 1piw_A          143 EHFVVPIPENIPSHLAAPLLCGGLTVYSPLV  173 (360)
T ss_dssp             GGGEEECCTTSCHHHHGGGGTHHHHHHHHHH
T ss_pred             hhheEECCCCCCHHHhhhhhhhHHHHHHHHH
Confidence            9999999999999999999999999999974

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=3.8e-33  Score=240.24  Aligned_cols=157  Identities=30%  Similarity=0.490  Sum_probs=127.8

Q ss_pred             eeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcC-CCC-CCCCCCceeccceeEEEEEeCCCCCC
Q 028493           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRS-TQP-PMAVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        21 ~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g-~~~-~~~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      .+|||+++++++..|++++++.|+|+++||||||.+++||++|++.+.| .++ ....+|.++|||++|+|+++|++|++
T Consensus         3 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   82 (348)
T 2d8a_A            3 EKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVEG   82 (348)
T ss_dssp             CEEEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CcceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCCc
Confidence            4599999999884599999999999999999999999999999999998 432 11367899999999999999999999


Q ss_pred             CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (208)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip  178 (208)
                      |++||||+..+..+|++|++|++|++|+|++...   +|...+|                   +|+||+++|.+.++++|
T Consensus        83 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP  140 (348)
T 2d8a_A           83 IEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKI---FGVDTDG-------------------VFAEYAVVPAQNIWKNP  140 (348)
T ss_dssp             CCTTCEEEECCEECCSCCC------------CEE---TTTSSCC-------------------SSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCe---ecCCCCC-------------------cCcceEEeChHHeEECC
Confidence            9999999999989999999999999999998764   3434445                   99999999999999999


Q ss_pred             CCCCccceeeccchhHHHhhee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      +++++++||++. .++|||+++
T Consensus       141 ~~~~~~~aa~~~-~~~ta~~~l  161 (348)
T 2d8a_A          141 KSIPPEYATLQE-PLGNAVDTV  161 (348)
T ss_dssp             TTSCHHHHTTHH-HHHHHHHHH
T ss_pred             CCCCHHHHHhhh-HHHHHHHHH
Confidence            999999998774 778999987

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=99.98  E-value=1.4e-32  Score=236.29  Aligned_cols=156  Identities=28%  Similarity=0.466  Sum_probs=139.0

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC--CCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~--~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      |||+++++++.+|++++++.|+|+++||||||.+++||++|++.+.|.++.  ...+|.++|||++|+|+++|++|++|+
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2dq4_A            1 MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQ   80 (343)
T ss_dssp             CEEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSC
T ss_pred             CeEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCC
Confidence            799999998877999999999999999999999999999999999986541  136789999999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||||+..+..+|++|++|+.|++|+|++...   +|...+|                   +|+||+++|.+.++++|++
T Consensus        81 vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  138 (343)
T 2dq4_A           81 VGDHVSLESHIVCHACPACRTGNYHVCLNTQI---LGVDRDG-------------------GFAEYVVVPAENAWVNPKD  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGEEEECTT
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCcce---ecCCCCC-------------------cceeEEEEchHHeEECCCC
Confidence            99999999989999999999999999998764   3433445                   9999999999999999999


Q ss_pred             CCccceeeccchhHHHhheee
Q 028493          181 IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++|+++ ..+.|||+++.
T Consensus       139 ~~~~~aa~~-~~~~ta~~~l~  158 (343)
T 2dq4_A          139 LPFEVAAIL-EPFGNAVHTVY  158 (343)
T ss_dssp             SCHHHHTTH-HHHHHHHHHHH
T ss_pred             CCHHHHHhh-hHHHHHHHHHH
Confidence            999998876 46679998874

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=99.98  E-value=3.2e-32  Score=234.14  Aligned_cols=157  Identities=27%  Similarity=0.457  Sum_probs=136.5

Q ss_pred             eeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC-CCCCCceeccceeEEEEEeCCCCCCC
Q 028493           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-MAVFPRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        21 ~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~-~~~~p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      .+|||+++++++.++++++++.|+|+++||||||++++||++|++.+.|.++. ...+|.++|||++|+|+++|++ ++|
T Consensus         2 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~~   80 (344)
T 2h6e_A            2 VKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AKV   80 (344)
T ss_dssp             EEEEBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CCC
T ss_pred             ceeEEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CCC
Confidence            36999999998766999999999999999999999999999999999987652 2367999999999999999999 999


Q ss_pred             CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEe-cCcEEEcC
Q 028493          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD-VTHVVKIT  178 (208)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~-~~~v~~ip  178 (208)
                      ++||||+.....+|++|++|+.|++|+|++...   +|...+|                   +|+||+++| .+.++++ 
T Consensus        81 ~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~~~i-  137 (344)
T 2h6e_A           81 KKGDNVVVYATWGDLTCRYCREGKFNICKNQII---PGQTTNG-------------------GFSEYMLVKSSRWLVKL-  137 (344)
T ss_dssp             CTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBC---BTTTBCC-------------------SSBSEEEESCGGGEEEE-
T ss_pred             CCCCEEEECCCCCCCCChhhhCCCcccCCCccc---cccccCC-------------------cceeeEEecCcccEEEe-
Confidence            999999888888999999999999999987643   4444445                   999999999 9999999 


Q ss_pred             CCCCccceeeccchhHHHhheee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++||.+++++.|||+++.
T Consensus       138 ~~l~~~~aa~l~~~~~ta~~al~  160 (344)
T 2h6e_A          138 NSLSPVEAAPLADAGTTSMGAIR  160 (344)
T ss_dssp             SSSCHHHHGGGGTHHHHHHHHHH
T ss_pred             CCCCHHHhhhhhhhhHHHHHHHH
Confidence            99999999999999999999874

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=99.98  E-value=2.2e-32  Score=235.07  Aligned_cols=160  Identities=28%  Similarity=0.419  Sum_probs=140.6

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC-CCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-MAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~-~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      |||+++++++++|++++++.|+|+++||||||++++||++|++.++|.++. ...+|.++|||++|+|+++|++|++|++
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v   80 (345)
T 3jv7_A            1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV   80 (345)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCC
Confidence            799999999988999999999999999999999999999999999987642 2468999999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccC--CCCCCCCCCCcccccCCCceeeeccCcccccceEEEe-cCcEEEcC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNK--DNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD-VTHVVKIT  178 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~--~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~-~~~v~~ip  178 (208)
                      ||+|++.+...|+.|.+|++|++|+|......  ...|...+|                   +|+||+++| ...++++|
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G-------------------~~aey~~v~~~~~~~~~p  141 (345)
T 3jv7_A           81 GDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPG-------------------SMAEYMIVDSARHLVPIG  141 (345)
T ss_dssp             TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCC-------------------SSBSEEEESCGGGEEECT
T ss_pred             CCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCc-------------------eeeEEEEecchhceEeCC
Confidence            99999999999999999999999999432211  001222334                   999999999 89999999


Q ss_pred             CCCCccceeeccchhHHHhheeee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al~~  202 (208)
                      + +++++||.++++++|||+++..
T Consensus       142 ~-~~~~~aa~l~~~~~ta~~~l~~  164 (345)
T 3jv7_A          142 D-LDPVAAAPLTDAGLTPYHAISR  164 (345)
T ss_dssp             T-CCHHHHGGGGTTTHHHHHHHHT
T ss_pred             C-CCHHHhhhhhhhHHHHHHHHHH
Confidence            9 9999999999999999999854

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=99.98  E-value=2.1e-32  Score=235.47  Aligned_cols=156  Identities=30%  Similarity=0.412  Sum_probs=140.4

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC-------CCCCCceeccceeEEEEEeCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-------MAVFPRILGHEAVGVVESVGGG   95 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~-------~~~~p~~~G~e~~G~Vv~vG~~   95 (208)
                      |||+++++++.++++++++.|+|+++||||||.+++||++|++.+.|.++.       ...+|.++|||++|+|+++|++
T Consensus         1 Mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~   80 (347)
T 1jvb_A            1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (347)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCC
Confidence            799999998867999999999999999999999999999999999886541       2367999999999999999999


Q ss_pred             CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEec-CcE
Q 028493           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV-THV  174 (208)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~-~~v  174 (208)
                      |++|++||||+.....+|++|++|+.|++|+|++...   .|...+|                   +|+||+++|. ..+
T Consensus        81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~  138 (347)
T 1jvb_A           81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGINFDG-------------------AYAEYVIVPHYKYM  138 (347)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEESCGGGE
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCccccc---ccccCCC-------------------cceeEEEecCccce
Confidence            9999999999888888999999999999999998764   3444445                   9999999999 999


Q ss_pred             EEcCCCCCccceeeccchhHHHhheee
Q 028493          175 VKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       175 ~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++ +++++++|+.+++++.|||+++.
T Consensus       139 ~~i-~~~~~~~aa~l~~~~~ta~~~l~  164 (347)
T 1jvb_A          139 YKL-RRLNAVEAAPLTCSGITTYRAVR  164 (347)
T ss_dssp             EEC-SSSCHHHHGGGGTHHHHHHHHHH
T ss_pred             EEe-CCCCHHHcccchhhHHHHHHHHH
Confidence            999 99999999999999999999873

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=99.98  E-value=4.3e-32  Score=234.00  Aligned_cols=156  Identities=23%  Similarity=0.279  Sum_probs=139.6

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhh-hhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVT-FWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~-~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      |||++++++++ +++++++.|+|+++||||||++++||++|++ ++.|.++.  ++|.++|||++|+|+++|++|++|++
T Consensus         1 MkA~~~~~~~~-~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~--~~p~v~G~E~~G~V~~vG~~v~~~~v   77 (352)
T 3fpc_A            1 MKGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGE--RHNMILGHEAVGEVVEVGSEVKDFKP   77 (352)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTCC--CSSEECCCEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEccCCC-ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCCC--CCCcccCCcceEEEEEECCCCCcCCC
Confidence            79999999998 9999999999999999999999999999999 66887765  67999999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP  179 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip~  179 (208)
                      ||||++.+..+|+.|.+|+.|++++|.........+...+|                   +|+||++++..  .++++|+
T Consensus        78 GdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G-------------------~~aey~~v~~~~~~~~~iP~  138 (352)
T 3fpc_A           78 GDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDG-------------------VFGEFFHVNDADMNLAHLPK  138 (352)
T ss_dssp             TCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCC-------------------SSBSCEEESSHHHHCEECCT
T ss_pred             CCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCC-------------------cccceEEeccccCeEEECCC
Confidence            99999999999999999999999999776432223333444                   99999999975  8999999


Q ss_pred             CCCccceeeccchhHHHhhee
Q 028493          180 DIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++|++++..++|||+++
T Consensus       139 ~~~~~~aa~~~~~~~ta~~al  159 (352)
T 3fpc_A          139 EIPLEAAVMIPDMMTTGFHGA  159 (352)
T ss_dssp             TSCHHHHTTTTTHHHHHHHHH
T ss_pred             CCCHHHHhhccchhHHHHHHH
Confidence            999999999999999999987

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=99.97  E-value=5e-32  Score=234.32  Aligned_cols=157  Identities=24%  Similarity=0.333  Sum_probs=138.9

Q ss_pred             cceeeeeEEEecCCCCeEEEEeecC--------CCCCCeEEEEEEeeeCChhhhhhhcCCC-C-CCCCCCceeccceeEE
Q 028493           19 KIIRCRAAISRIPGKPLVMEEIEVD--------PPKAGEVRIKILCTSLCHSDVTFWRSTQ-P-PMAVFPRILGHEAVGV   88 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~~l~~~~~~~p--------~~~~~eVlVkV~a~~l~~sD~~~~~g~~-~-~~~~~p~~~G~e~~G~   88 (208)
                      ++++|||+++++++. |++++++.|        +|+++||||||++++||++|++.+.+.. . ...++|.++|||++|+
T Consensus         5 ~~~~mka~~~~~~~~-l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G~   83 (363)
T 3m6i_A            5 ASKTNIGVFTNPQHD-LWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGE   83 (363)
T ss_dssp             CCSCCEEEEECTTCC-EEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEEE
T ss_pred             CcccceeEEEeCCCc-EEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEEE
Confidence            467899999998877 999999999        9999999999999999999999887432 1 1236799999999999


Q ss_pred             EEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCC-CCCCCcccccCCCceeeeccCcccccceE
Q 028493           89 VESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYT  167 (208)
Q Consensus        89 Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~e~~  167 (208)
                      |+++|++|++|++||||++.+..+|+.|.+|+.|++|.|.....   .|. ..+|                   +|+||+
T Consensus        84 V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~~G-------------------~~aey~  141 (363)
T 3m6i_A           84 VIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDF---LSTPPVPG-------------------LLRRYV  141 (363)
T ss_dssp             EEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTSTTSCC-------------------SCBSEE
T ss_pred             EEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccc---cCCCCCCc-------------------cceeEE
Confidence            99999999999999999999999999999999999999998775   222 2344                   999999


Q ss_pred             EEecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493          168 VVDVTHVVKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       168 ~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++|...++++|+ +++++||++ ..+.|||+++
T Consensus       142 ~v~~~~~~~iP~-~s~~~aa~~-~~~~ta~~~l  172 (363)
T 3m6i_A          142 NHPAVWCHKIGN-MSYENGAML-EPLSVALAGL  172 (363)
T ss_dssp             EEEGGGEEECTT-CCHHHHHHH-HHHHHHHHHH
T ss_pred             EEehhhEEECCC-CCHHHHHhh-hHHHHHHHHH
Confidence            999999999999 999999977 4778999987

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=99.97  E-value=4.5e-32  Score=232.74  Aligned_cols=150  Identities=28%  Similarity=0.498  Sum_probs=135.5

Q ss_pred             eeeEEEecCCCCeEEEEeecCC-CCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDP-PKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~-~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      |||+++++++. ++++|+|.|+ +++|||||||.+++||++|++.+.|..+.  .+|.++|||++|+|+++|++|+++++
T Consensus         1 MkAvv~~~~g~-l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~~--~~P~i~G~E~~G~V~~vG~~V~~~~~   77 (346)
T 4a2c_A            1 MKSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAH--YYPITLGHEFSGYIDAVGSGVDDLHP   77 (346)
T ss_dssp             CEEEEECSSSC-EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCSS--SSSBCCCCEEEEEEEEECTTCCSCCT
T ss_pred             CCEEEEecCCC-EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCCC--CCCccccEEEEEEEEEECCCcccccC
Confidence            89999999987 9999999998 57999999999999999999999987665  78999999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      ||+|+..+...|+.|..|+.|.+++|.....   .|...+|                   +|+||+++|.+.++++|+++
T Consensus        78 GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~l  135 (346)
T 4a2c_A           78 GDAVACVPLLPCFTCPECLKGFYSQCAKYDF---IGSRRDG-------------------GFAEYIVVKRKNVFALPTDM  135 (346)
T ss_dssp             TCEEEECCEECCSCSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEEEGGGEEECCTTS
T ss_pred             CCeEEeeeccCCCCcccccCCccccCCCccc---ccCCCCc-------------------ccccccccchheEEECCCCC
Confidence            9999999999999999999999999998775   5555666                   99999999999999999999


Q ss_pred             CccceeeccchhHHHhh
Q 028493          182 PLDIACLLSCGVSTGNY  198 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~  198 (208)
                      ++++||++. .+.++++
T Consensus       136 ~~~~aa~l~-~~~~~~~  151 (346)
T 4a2c_A          136 PIEDGAFIE-PITVGLH  151 (346)
T ss_dssp             CGGGGGGHH-HHHHHHH
T ss_pred             CHHHHHhch-HHHHHHH
Confidence            999998764 3344443

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=99.97  E-value=5.4e-32  Score=233.38  Aligned_cols=156  Identities=27%  Similarity=0.450  Sum_probs=135.9

Q ss_pred             eeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcC-CCCC-CCCCCceeccceeEEEEEeCCCCCC
Q 028493           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRS-TQPP-MAVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        21 ~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g-~~~~-~~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      ++|||+++++++. |++++++.|+|+++||||||++++||++|++.+.+ .+.. ..++|.++|||++|+|+++|++|++
T Consensus         3 ~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (352)
T 1e3j_A            3 SDNLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKH   81 (352)
T ss_dssp             -CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCS
T ss_pred             ccCEEEEEEcCCc-EEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCCC
Confidence            4689999999875 99999999999999999999999999999998874 3321 1357899999999999999999999


Q ss_pred             CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCC-CCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      |++||||+..+..+|+.|++|+.|++|+|++..+   .|.. .+|                   +|+||+++|.+.++++
T Consensus        82 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~G-------------------~~aey~~v~~~~~~~i  139 (352)
T 1e3j_A           82 LKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF---CATPPDDG-------------------NLARYYVHAADFCHKL  139 (352)
T ss_dssp             CCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---TTBTTBCC-------------------SCBSEEEEEGGGEEEC
T ss_pred             CCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcc---cCcCCCCc-------------------cceeEEEeChHHeEEC
Confidence            9999999999889999999999999999998764   2321 234                   9999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhhee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      |+++++++|+++ ..++|||+++
T Consensus       140 P~~~~~~~aa~~-~~~~ta~~al  161 (352)
T 1e3j_A          140 PDNVSLEEGALL-EPLSVGVHAC  161 (352)
T ss_dssp             CTTSCHHHHHTH-HHHHHHHHHH
T ss_pred             cCCCCHHHHHhh-chHHHHHHHH
Confidence            999999998865 5778999887

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=99.97  E-value=1.5e-31  Score=231.20  Aligned_cols=166  Identities=26%  Similarity=0.383  Sum_probs=139.6

Q ss_pred             ceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493           20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        20 ~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      +++|++++++++.+.|++++++.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|
T Consensus         7 ~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~v~~~   85 (357)
T 2cf5_A            7 ERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSKF   85 (357)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTC-CCSSBCCCCEEEEEEEEECSSCCSC
T ss_pred             cceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCC-CCCCeecCcceeEEEEEECCCCCCC
Confidence            567899999887667999999999999999999999999999999999987653 4679999999999999999999999


Q ss_pred             CCCCEEeeecc-CCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493          100 REGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (208)
Q Consensus       100 ~vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip  178 (208)
                      ++||||+..+. .+|+.|++|+.|++|+|....... .+....|              ....|+|+||+++|...++++|
T Consensus        86 ~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~-~~~~~~g--------------~~~~G~~aey~~v~~~~~~~~P  150 (357)
T 2cf5_A           86 TVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSY-NDVYING--------------QPTQGGFAKATVVHQKFVVKIP  150 (357)
T ss_dssp             CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETT-TSBCTTS--------------CBCCCSSBSCEEEEGGGEEECC
T ss_pred             CCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccc-cccccCC--------------CCCCCccccEEEechhhEEECc
Confidence            99999987553 579999999999999996543210 1100011              0112499999999999999999


Q ss_pred             CCCCccceeeccchhHHHhheee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++||.+++++.|||+++.
T Consensus       151 ~~ls~~~aa~l~~~~~ta~~~l~  173 (357)
T 2cf5_A          151 EGMAVEQAAPLLCAGVTVYSPLS  173 (357)
T ss_dssp             SSCCHHHHTGGGTHHHHHHHHHH
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHH
Confidence            99999999999999999999873

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.97  E-value=1.1e-31  Score=233.25  Aligned_cols=163  Identities=28%  Similarity=0.397  Sum_probs=138.8

Q ss_pred             cceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC
Q 028493           19 KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      ..++||++++.++++.|++++++.|+|+++||||||++++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++
T Consensus        19 ~~~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~~   97 (369)
T 1uuf_A           19 AGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAG-TVYPCVPGHEIVGRVVAVGDQVEK   97 (369)
T ss_dssp             ----CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSC-CCSSBCCCCCEEEEEEEECTTCCS
T ss_pred             cCceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCC-CCCCeecccCceEEEEEECCCCCC
Confidence            4567999999887777999999999999999999999999999999999987654 457999999999999999999999


Q ss_pred             CCCCCEEeeecc-CCCCCCccccCCCCCCCCCCccCCC-----CCCCCCCCcccccCCCceeeeccCcccccceEEEecC
Q 028493           99 VREGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDN-----QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT  172 (208)
Q Consensus        99 ~~vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~-----~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~  172 (208)
                      |++||||++.+. ..|+.|++|++|++|+|++......     .|...+|                   +|+||+++|.+
T Consensus        98 ~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G-------------------~~aeyv~v~~~  158 (369)
T 1uuf_A           98 YAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLG-------------------GYSQQIVVHER  158 (369)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCC-------------------SSBSEEEEEGG
T ss_pred             CCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCC-------------------cccceEEEcch
Confidence            999999998765 4699999999999999987631100     0212233                   99999999999


Q ss_pred             cEEEcCCC-CCccceeeccchhHHHhheee
Q 028493          173 HVVKITPD-IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       173 ~v~~ip~~-~~~~~aa~l~~~~~ta~~al~  201 (208)
                      .++++|++ +++++||.+++++.|||+++.
T Consensus       159 ~~~~~P~~~ls~~~aa~l~~~~~tA~~al~  188 (369)
T 1uuf_A          159 YVLRIRHPQEQLAAVAPLLCAGITTYSPLR  188 (369)
T ss_dssp             GCEECCSCGGGHHHHGGGGTHHHHHHHHHH
T ss_pred             hEEECCCCCCCHHHhhhhhhhHHHHHHHHH
Confidence            99999999 999999999999999999874

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=99.97  E-value=1.9e-31  Score=232.51  Aligned_cols=165  Identities=27%  Similarity=0.424  Sum_probs=138.9

Q ss_pred             cceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC-
Q 028493           19 KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE-   97 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~-   97 (208)
                      +..+|||++++++++.|++++++.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++| +|+ 
T Consensus        14 ~~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~P~v~GhE~~G~V~~vG-~V~~   91 (380)
T 1vj0_A           14 MGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPR-VPLPIILGHEGAGRVVEVN-GEKR   91 (380)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEES-SCCB
T ss_pred             hhhheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCC-CCCCcccCcCcEEEEEEeC-Cccc
Confidence            4467999999999845999999999999999999999999999999999997652 4678999999999999999 999 


Q ss_pred             -----CCCCCCEEeeeccCCCCCCcccc-CCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEE-e
Q 028493           98 -----EVREGDLVLPVFQGDCGECRDCK-SPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVV-D  170 (208)
Q Consensus        98 -----~~~vGd~V~~~~~~~c~~c~~~~-~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v-~  170 (208)
                           +|++||||++.+..+|+.|++|+ .|++|+|+....   +|..... .          ......|+|+||+++ |
T Consensus        92 ~~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~---~g~~~~~-~----------~~~~~~G~~aey~~v~~  157 (380)
T 1vj0_A           92 DLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGC-S----------EYPHLRGCYSSHIVLDP  157 (380)
T ss_dssp             CTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCS-S----------STTCCCSSSBSEEEECT
T ss_pred             cccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcce---ecccccc-C----------CCCCCCccccceEEEcc
Confidence                 99999999999989999999999 999999987654   2220000 0          000012399999999 9


Q ss_pred             cCcEEEcCCCCCcc-ceeeccchhHHHhhee
Q 028493          171 VTHVVKITPDIPLD-IACLLSCGVSTGNYRT  200 (208)
Q Consensus       171 ~~~v~~ip~~~~~~-~aa~l~~~~~ta~~al  200 (208)
                      .+.++++|++++++ +|+++. +++|||+++
T Consensus       158 ~~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al  187 (380)
T 1vj0_A          158 ETDVLKVSEKDDLDVLAMAMC-SGATAYHAF  187 (380)
T ss_dssp             TCCEEEECTTSCHHHHHHHTT-HHHHHHHHH
T ss_pred             cceEEECCCCCChHHhHhhhc-HHHHHHHHH
Confidence            99999999999999 666665 899999987

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=99.97  E-value=2.9e-31  Score=230.29  Aligned_cols=167  Identities=25%  Similarity=0.388  Sum_probs=137.9

Q ss_pred             cceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC
Q 028493           19 KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      .+++|+++...+....|++++++.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++
T Consensus        13 ~~mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V~~   91 (366)
T 1yqd_A           13 HPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGF-SMYPLVPGHEIVGEVTEVGSKVKK   91 (366)
T ss_dssp             SSEEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSC-CCSSBCCCCCEEEEEEEECTTCCS
T ss_pred             CCeeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCC-CCCCEecccceEEEEEEECCCCCc
Confidence            4566677777666556999999999999999999999999999999999987653 467899999999999999999999


Q ss_pred             CCCCCEEeeecc-CCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           99 VREGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        99 ~~vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      |++||+|++.+. ..|+.|.+|+.|++|+|....... .+....|              ....|+|+||+++|...++++
T Consensus        92 ~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~-~~~~~~g--------------~~~~G~~aey~~v~~~~~~~~  156 (366)
T 1yqd_A           92 VNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTY-ASIYHDG--------------TITYGGYSNHMVANERYIIRF  156 (366)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESS-SSBCTTS--------------CBCCCSSBSEEEEEGGGCEEC
T ss_pred             CCCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccc-cccccCC--------------CcCCCccccEEEEchhhEEEC
Confidence            999999987543 589999999999999996554321 1110011              011249999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhheee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      |+++++++||.+++++.|||+++.
T Consensus       157 P~~ls~~~aa~l~~~~~ta~~al~  180 (366)
T 1yqd_A          157 PDNMPLDGGAPLLCAGITVYSPLK  180 (366)
T ss_dssp             CTTSCTTTTGGGGTHHHHHHHHHH
T ss_pred             CCCCCHHHhhhhhhhHHHHHHHHH
Confidence            999999999999999999999873

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=99.97  E-value=1.1e-31  Score=231.98  Aligned_cols=156  Identities=24%  Similarity=0.400  Sum_probs=136.2

Q ss_pred             eeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCC-CC-CCCCCceeccceeEEEEEeCCCCCC
Q 028493           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ-PP-MAVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        21 ~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~-~~-~~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      ++|||+++++++. |++++++.|+|+++||||||.+++||++|++.+.|.. .. ...+|.++|||++|+|+++|++|++
T Consensus         6 ~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~~   84 (356)
T 1pl8_A            6 PNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKH   84 (356)
T ss_dssp             CCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCS
T ss_pred             cCceEEEEecCCc-EEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCCC
Confidence            4589999999875 9999999999999999999999999999999888432 11 1357899999999999999999999


Q ss_pred             CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCC-CCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      |++||||++.+..+|+.|++|+.|++|+|+....   .|. ..+|                   +|+||+++|.+.++++
T Consensus        85 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~G-------------------~~aey~~v~~~~~~~i  142 (356)
T 1pl8_A           85 LKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDDG-------------------NLCRFYKHNAAFCYKL  142 (356)
T ss_dssp             CCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBCC-------------------SCBSEEEEEGGGEEEC
T ss_pred             CCCCCEEEEeccCCCCCChHHHCcCcccCCCccc---cCcCCCCC-------------------ccccEEEeehHHEEEC
Confidence            9999999999999999999999999999998764   232 1234                   9999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhhee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      |+++++++|+++ ..++|||+++
T Consensus       143 P~~l~~~~aa~~-~~~~ta~~al  164 (356)
T 1pl8_A          143 PDNVTFEEGALI-EPLSVGIHAC  164 (356)
T ss_dssp             CTTSCHHHHHHH-HHHHHHHHHH
T ss_pred             cCCCCHHHHHhh-chHHHHHHHH
Confidence            999999998865 5778999887

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=99.97  E-value=1.5e-31  Score=229.70  Aligned_cols=155  Identities=24%  Similarity=0.365  Sum_probs=139.5

Q ss_pred             eeeEEEecC-CCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           23 CRAAISRIP-GKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        23 ~ka~~~~~~-~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      |||+++... ...++++|+|+|+|++|||||||.|++||++|+++++|.++.  ++|.++|||++|+|+++|++|++|++
T Consensus         1 MKA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~--~~p~i~GhE~aG~V~~vG~~V~~~~~   78 (348)
T 4eez_A            1 MKAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGN--KAGTVLGHEGIGIVKEIGADVSSLQV   78 (348)
T ss_dssp             CEEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCC--CTTCBCCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCC--CCCcccceeEEEEEEEECceeeeccc
Confidence            799999653 334999999999999999999999999999999999998766  78999999999999999999999999


Q ss_pred             CCEEeeeccC-CCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          102 GDLVLPVFQG-DCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       102 Gd~V~~~~~~-~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      ||||+..+.. .|+.|.+|+.+..+.|.....   .+...+|                   +|+||+.++...++++|++
T Consensus        79 GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~G-------------------~~ae~~~~~~~~~~~iP~~  136 (348)
T 4eez_A           79 GDRVSVAWFFEGCGHCEYCVSGNETFCREVKN---AGYSVDG-------------------GMAEEAIVVADYAVKVPDG  136 (348)
T ss_dssp             TCEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGSCBCCTT
T ss_pred             CCeEeecccccccCccccccCCcccccccccc---cccccCC-------------------cceeeccccccceeecCCC
Confidence            9999887654 568999999999999988775   4445556                   9999999999999999999


Q ss_pred             CCccceeeccchhHHHhheee
Q 028493          181 IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++|++++++++|+|+++.
T Consensus       137 ~~~~~aa~l~~~~~ta~~~l~  157 (348)
T 4eez_A          137 LDPIEASSITCAGVTTYKAIK  157 (348)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHhhcccceeeEEeeec
Confidence            999999999999999999873

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=99.97  E-value=6.9e-31  Score=227.54  Aligned_cols=162  Identities=19%  Similarity=0.170  Sum_probs=135.9

Q ss_pred             ccccccceeeeeEEEecCC-CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEe
Q 028493           14 SSTAGKIIRCRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESV   92 (208)
Q Consensus        14 ~~~~~~~~~~ka~~~~~~~-~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~v   92 (208)
                      ..+..+|.+|||+++++++ +.|++++++.|+|+++||||||.+++||++|++.+.|.++...++|.++|||++|+|+++
T Consensus        19 ~~~~~m~~~mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~v   98 (363)
T 3uog_A           19 YFQSMMSKWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAV   98 (363)
T ss_dssp             ----CCCSEEEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEE
T ss_pred             EEeccCchhhEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEE
Confidence            3334578889999999764 349999999999999999999999999999999999987654578999999999999999


Q ss_pred             CCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCC-CCCCCCCCcccccCCCceeeeccCcccccceEEEec
Q 028493           93 GGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN-QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV  171 (208)
Q Consensus        93 G~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~-~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~  171 (208)
                      |++|++|++||||++.+..      .|+.|. +.|........ .|...+|                   +|+||+++|.
T Consensus        99 G~~v~~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~~~~G-------------------~~aey~~v~~  152 (363)
T 3uog_A           99 GKSVTRFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGGAHPG-------------------VLSEYVVLPE  152 (363)
T ss_dssp             CTTCCSCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTTTSCC-------------------CCBSEEEEEG
T ss_pred             CCCCCCCCCCCEEEEeccc------cccccc-cccccccccccccCcCCCC-------------------cceeEEEech
Confidence            9999999999999987543      678888 88874322111 3334445                   9999999999


Q ss_pred             CcEEEcCCCCCccceeeccchhHHHhheee
Q 028493          172 THVVKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       172 ~~v~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      ..++++|+++++++||+++++++|||+++.
T Consensus       153 ~~~~~iP~~~~~~~aa~l~~~~~ta~~al~  182 (363)
T 3uog_A          153 GWFVAAPKSLDAAEASTLPCAGLTAWFALV  182 (363)
T ss_dssp             GGEEECCTTSCHHHHHTTTTHHHHHHHHHT
T ss_pred             HHeEECCCCCCHHHHhhcccHHHHHHHHHH
Confidence            999999999999999999999999999984

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.97  E-value=4e-31  Score=228.45  Aligned_cols=153  Identities=20%  Similarity=0.267  Sum_probs=133.5

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCC---CceeccceeEEEEEeCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVF---PRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~---p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      |||+++++++.+|++++++.|+|+++||||||.+++||++|++.++|.++. .++   |.++|||++| |+++|++ ++|
T Consensus         1 MkA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~~~p~v~G~E~~G-V~~vG~~-~~~   77 (357)
T 2b5w_A            1 MKAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGG-FPEGEDHLVLGHEAVG-VVVDPND-TEL   77 (357)
T ss_dssp             CEEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTT-SCTTCSEEECCSEEEE-EEEECTT-SSC
T ss_pred             CeEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCC-CCCCCCCcccCceeEE-EEEECCC-CCC
Confidence            799999998877999999999999999999999999999999999987654 356   8999999999 9999999 999


Q ss_pred             CCCCEEeeeccCC--CCCCccccCCCCCCCCCCccCCCCCC-CCCCCcccccCCCceeeeccCcccccceEEEecCcEEE
Q 028493          100 REGDLVLPVFQGD--CGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK  176 (208)
Q Consensus       100 ~vGd~V~~~~~~~--c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~  176 (208)
                      ++||||+..+...  |++|++|+.|++|+|++..... .|. ..+|                   +|+||+++|.+.+++
T Consensus        78 ~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~g~~~~~G-------------------~~aey~~v~~~~~~~  137 (357)
T 2b5w_A           78 EEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFE-RGIVGAHG-------------------YMSEFFTSPEKYLVR  137 (357)
T ss_dssp             CTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEE-ETTBEECC-------------------SCBSEEEEEGGGEEE
T ss_pred             CCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccc-cCccCCCc-------------------ceeeEEEEchHHeEE
Confidence            9999999988777  9999999999999998765310 022 2234                   999999999999999


Q ss_pred             cCCCCCccceeeccchhHHHhhee
Q 028493          177 ITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       177 ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      +|++++ ++| +++.+++|||+++
T Consensus       138 iP~~~~-~~a-al~~~~~ta~~al  159 (357)
T 2b5w_A          138 IPRSQA-ELG-FLIEPISITEKAL  159 (357)
T ss_dssp             CCGGGS-TTG-GGHHHHHHHHHHH
T ss_pred             CCCCcc-hhh-hhhchHHHHHHHH
Confidence            999999 654 5778899999987

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=99.97  E-value=4.2e-31  Score=231.49  Aligned_cols=160  Identities=24%  Similarity=0.330  Sum_probs=136.4

Q ss_pred             eeeeEEEecCCCCeEEEEeecCCC-CC-----CeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCC
Q 028493           22 RCRAAISRIPGKPLVMEEIEVDPP-KA-----GEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (208)
Q Consensus        22 ~~ka~~~~~~~~~l~~~~~~~p~~-~~-----~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~   95 (208)
                      +|||+++++++. |++++++.|+| ++     +||||||.+++||++|++.+.|.++.  ++|.++|||++|+|+++|++
T Consensus         2 ~MkA~~~~~~~~-l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~~--~~p~v~GhE~~G~V~~vG~~   78 (398)
T 2dph_A            2 GNKSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIV--PKGHVLGHEITGEVVEKGSD   78 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSCC--CTTCBCCCCEEEEEEEECTT
T ss_pred             ccEEEEEEcCCC-EEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCCC--CCCcccCCceEEEEEEECCC
Confidence            589999999875 99999999987 68     99999999999999999999987543  67899999999999999999


Q ss_pred             CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccC-----CCCCCCCCCCcccccCCCceeeeccCcccccceEEEe
Q 028493           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNK-----DNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD  170 (208)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~-----~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~  170 (208)
                      |++|++||||++.+...|+.|++|++|++|+|......     ..+|...                ....|+|+||++++
T Consensus        79 v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~----------------~~~~G~~aey~~v~  142 (398)
T 2dph_A           79 VELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDL----------------KGWSGGQAEYVLVP  142 (398)
T ss_dssp             CCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTB----------------SSCCCSSBSEEEES
T ss_pred             CCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCcccccccccccccccc----------------CCCCceeeeeEEec
Confidence            99999999999999999999999999999999872110     0111100                00124999999999


Q ss_pred             cC--cEEEcCCCCCccc----eeeccchhHHHhhee
Q 028493          171 VT--HVVKITPDIPLDI----ACLLSCGVSTGNYRT  200 (208)
Q Consensus       171 ~~--~v~~ip~~~~~~~----aa~l~~~~~ta~~al  200 (208)
                      ..  .++++|+++++++    +++++++++|||+++
T Consensus       143 ~~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al  178 (398)
T 2dph_A          143 YADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC  178 (398)
T ss_dssp             SHHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH
T ss_pred             cccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH
Confidence            86  8999999999988    888889999999987

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.97  E-value=5.7e-31  Score=230.42  Aligned_cols=162  Identities=25%  Similarity=0.335  Sum_probs=136.9

Q ss_pred             eeeeEEEecCCCCeEEEEeecCCCC-CCe------EEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCC
Q 028493           22 RCRAAISRIPGKPLVMEEIEVDPPK-AGE------VRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG   94 (208)
Q Consensus        22 ~~ka~~~~~~~~~l~~~~~~~p~~~-~~e------VlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~   94 (208)
                      +|||+++++++. |++++++.|+|+ ++|      |||||.+++||++|++.++|.++.  ++|.++|||++|+|+++|+
T Consensus         2 ~Mka~~~~~~~~-l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~p~v~GhE~~G~V~~vG~   78 (398)
T 1kol_A            2 GNRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA--QVGLVLGHEITGEVIEKGR   78 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC--CTTCBCCCCEEEEEEEECT
T ss_pred             ccEEEEEecCCc-eEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCCC--CCCcccCcccEEEEEEECC
Confidence            589999998875 999999999997 898      999999999999999999987543  6789999999999999999


Q ss_pred             CCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCC---CCCCCCCCCcccccCCCceeeeccCcccccceEEEec
Q 028493           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD---NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV  171 (208)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~---~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~  171 (208)
                      +|++|++||||+..+..+|+.|++|++|++|+|+......   .+|....               ....|+|+||+++|.
T Consensus        79 ~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~---------------~~~~G~~aey~~v~~  143 (398)
T 1kol_A           79 DVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDM---------------GDWTGGQAEYVLVPY  143 (398)
T ss_dssp             TCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTS---------------CCBCCCSBSEEEESS
T ss_pred             CCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccC---------------CCCCceeeeEEEecc
Confidence            9999999999999888899999999999999998764210   0111000               001249999999997


Q ss_pred             C--cEEEcCCCCCccc----eeeccchhHHHhheee
Q 028493          172 T--HVVKITPDIPLDI----ACLLSCGVSTGNYRTL  201 (208)
Q Consensus       172 ~--~v~~ip~~~~~~~----aa~l~~~~~ta~~al~  201 (208)
                      .  .++++|+++++++    ++++++.++|||+++.
T Consensus       144 ~~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al~  179 (398)
T 1kol_A          144 ADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAV  179 (398)
T ss_dssp             HHHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHHH
T ss_pred             hhCeEEECCCCcchhhhcccccccccHHHHHHHHHH
Confidence            6  8999999999887    6788889999999984

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.96  E-value=1.7e-30  Score=228.17  Aligned_cols=162  Identities=25%  Similarity=0.323  Sum_probs=139.9

Q ss_pred             cccceeeeeEEEecCCCCeEEEEeecCC-CCCCeEEEEEEeeeCChhhhhhhcCCC------CCCCCCCceeccceeEEE
Q 028493           17 AGKIIRCRAAISRIPGKPLVMEEIEVDP-PKAGEVRIKILCTSLCHSDVTFWRSTQ------PPMAVFPRILGHEAVGVV   89 (208)
Q Consensus        17 ~~~~~~~ka~~~~~~~~~l~~~~~~~p~-~~~~eVlVkV~a~~l~~sD~~~~~g~~------~~~~~~p~~~G~e~~G~V   89 (208)
                      ...+.+|+++++..++. |++++++.|+ |+++||||||.+++||++|++++.|..      +...++|.++|||++|+|
T Consensus        25 ~~~~~~m~a~~~~~~~~-l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V  103 (404)
T 3ip1_A           25 IEGKLTWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVV  103 (404)
T ss_dssp             BTTTBBSCGGGTEEEEE-EEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEE
T ss_pred             hhhhhhcceEEEEeCCc-eEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEE
Confidence            34556677777777665 9999999999 999999999999999999999988642      222467999999999999


Q ss_pred             EEeCCCC------CCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccc
Q 028493           90 ESVGGGV------EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSF  163 (208)
Q Consensus        90 v~vG~~v------~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~  163 (208)
                      +++|++|      ++|++||+|++.+..+|+.|++|+.|++|+|.+...   .|...+|                   +|
T Consensus       104 ~~vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~  161 (404)
T 3ip1_A          104 VEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNE---LGFNVDG-------------------AF  161 (404)
T ss_dssp             EEECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SS
T ss_pred             EEECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccc---cCCCCCC-------------------CC
Confidence            9999999      899999999999999999999999999999998764   4555556                   99


Q ss_pred             cceEEEecCcEEEcCCCCCc------cceeeccchhHHHhheee
Q 028493          164 TEYTVVDVTHVVKITPDIPL------DIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       164 ~e~~~v~~~~v~~ip~~~~~------~~aa~l~~~~~ta~~al~  201 (208)
                      +||+++|...++++|+.++.      .++|+++..++|||+++.
T Consensus       162 aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~  205 (404)
T 3ip1_A          162 AEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVI  205 (404)
T ss_dssp             BSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHT
T ss_pred             cceEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHH
Confidence            99999999999999998763      457788889999999974

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=99.96  E-value=8.4e-30  Score=226.16  Aligned_cols=165  Identities=18%  Similarity=0.133  Sum_probs=138.2

Q ss_pred             ccccccceeeeeEEEecCC-------------CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhc------------
Q 028493           14 SSTAGKIIRCRAAISRIPG-------------KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR------------   68 (208)
Q Consensus        14 ~~~~~~~~~~ka~~~~~~~-------------~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~------------   68 (208)
                      ++....|.+|||++++.++             ..|++++++.|+|+++||||||.+++||++|++...            
T Consensus        16 ~~~~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~   95 (447)
T 4a0s_A           16 IEAAPVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQ   95 (447)
T ss_dssp             HHHSCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHH
T ss_pred             hhccCCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhh
Confidence            4455789999999999987             239999999999999999999999999999986432            


Q ss_pred             ----CCCCCCCCCC-ceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCC-CC
Q 028493           69 ----STQPPMAVFP-RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR-DG  142 (208)
Q Consensus        69 ----g~~~~~~~~p-~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~-~G  142 (208)
                          |.+.....+| .++|||++|+|+++|++|++|++||+|++.+...|+.|+.| .+..++|...+.   .|... +|
T Consensus        96 ~~~~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~~~-~~~~~~c~~~~~---~G~~~~~G  171 (447)
T 4a0s_A           96 NARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPAT-HGDGMLGTEQRA---WGFETNFG  171 (447)
T ss_dssp             HHTTCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSGGG-GTCTTCSTTCEE---TTTTSSSC
T ss_pred             hcccCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccccc-cccccccccccc---ccccCCCC
Confidence                2111112456 69999999999999999999999999999888878777654 578999988765   33322 24


Q ss_pred             CcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchhHHHhheee
Q 028493          143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                                         +|+||+++|...++++|+++++++||+++++++|||++|.
T Consensus       172 -------------------~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~  211 (447)
T 4a0s_A          172 -------------------GLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLV  211 (447)
T ss_dssp             -------------------SSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHT
T ss_pred             -------------------ceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHH
Confidence                               9999999999999999999999999999999999999874

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=99.96  E-value=7.1e-30  Score=221.31  Aligned_cols=153  Identities=26%  Similarity=0.438  Sum_probs=129.3

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCC-CeEEEEEEeeeCChhhhhhhcC--CCCCCCCC---CceeccceeEEEEEeCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKA-GEVRIKILCTSLCHSDVTFWRS--TQPPMAVF---PRILGHEAVGVVESVGGGV   96 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~-~eVlVkV~a~~l~~sD~~~~~g--~~~~~~~~---p~~~G~e~~G~Vv~vG~~v   96 (208)
                      |||+++++++.+|++++++.|+|++ +||||||.+++||++|++.+.|  .++. ..+   |.++|||++|+|++  ++ 
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~-~~~~~~p~v~G~E~~G~V~~--~~-   76 (366)
T 2cdc_A            1 MKAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLST-LPKGKDFLVLGHEAIGVVEE--SY-   76 (366)
T ss_dssp             CEEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC--------CCSCEECCSEEEEEECS--CC-
T ss_pred             CeEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCC-CCcCCCCCcCCcceEEEEEe--CC-
Confidence            7999999988669999999999999 9999999999999999999998  5542 356   89999999999999  77 


Q ss_pred             CCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCC-CCCCcccccCCCceeeeccCcccccceEEEecCcEE
Q 028493           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (208)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~  175 (208)
                      ++|++||||++.+..+|++|++|++|++|+|++.... ..|.. .+|                   +|+||++++...++
T Consensus        77 ~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~g~~~~~G-------------------~~aey~~v~~~~~~  136 (366)
T 2cdc_A           77 HGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFG-EAGIHKMDG-------------------FMREWWYDDPKYLV  136 (366)
T ss_dssp             SSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCE-EETTBEECC-------------------SCBSEEEECGGGEE
T ss_pred             CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcc-cCCccCCCC-------------------ceeEEEEechHHeE
Confidence            8999999999998899999999999999999876531 00222 234                   99999999999999


Q ss_pred             EcCCCCCccceeeccchhHHHhheee
Q 028493          176 KITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       176 ~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++|++++ ++|+ ++..++|||+++.
T Consensus       137 ~iP~~l~-~~Aa-l~~~~~ta~~al~  160 (366)
T 2cdc_A          137 KIPKSIE-DIGI-LAQPLADIEKSIE  160 (366)
T ss_dssp             EECGGGT-TTGG-GHHHHHHHHHHHH
T ss_pred             ECcCCcc-hhhh-hcCcHHHHHHHHH
Confidence            9999999 7765 6678899999885

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=99.96  E-value=4.1e-29  Score=222.51  Aligned_cols=165  Identities=15%  Similarity=0.131  Sum_probs=138.3

Q ss_pred             ccccccceeeeeEEEecCC---------------CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCC------
Q 028493           14 SSTAGKIIRCRAAISRIPG---------------KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP------   72 (208)
Q Consensus        14 ~~~~~~~~~~ka~~~~~~~---------------~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~------   72 (208)
                      |++...|.+|||+++++++               ..+++++++.|+|+++||||||.+++||++|++...+...      
T Consensus        22 ~~~~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~  101 (456)
T 3krt_A           22 IAALPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFL  101 (456)
T ss_dssp             HHHSCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHH
T ss_pred             hccCCCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhh
Confidence            3344578999999999862               3499999999999999999999999999999876543211      


Q ss_pred             ----------CCCCCC-ceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCC-
Q 028493           73 ----------PMAVFP-RILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR-  140 (208)
Q Consensus        73 ----------~~~~~p-~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~-  140 (208)
                                ...++| .++|||++|+|+++|++|++|++||+|++.+. .|..|..|..+..+.|+..+.   .|... 
T Consensus       102 ~~~g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~-~c~~~~~~~~~~~~~c~~~~~---~G~~~~  177 (456)
T 3krt_A          102 ERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL-SVELESSDGHNDTMLDPEQRI---WGFETN  177 (456)
T ss_dssp             HHHHTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCE-ECCCCSGGGTTSGGGCTTCEE---TTTTSS
T ss_pred             hhccccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCC-cccccccccccccccCccccc---cccCCC
Confidence                      012467 69999999999999999999999999998654 588899999999999988775   33322 


Q ss_pred             CCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchhHHHhheee
Q 028493          141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       141 ~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +|                   +|+||+++|...++++|+++++++||+++++++|||+++.
T Consensus       178 ~G-------------------~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~  219 (456)
T 3krt_A          178 FG-------------------GLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLV  219 (456)
T ss_dssp             SC-------------------SSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHT
T ss_pred             CC-------------------cccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHH
Confidence            24                   9999999999999999999999999999999999999874

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=99.95  E-value=2.6e-28  Score=209.76  Aligned_cols=142  Identities=18%  Similarity=0.218  Sum_probs=121.9

Q ss_pred             cCCcccccccceeeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeE
Q 028493           10 NKNASSTAGKIIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVG   87 (208)
Q Consensus        10 ~~~~~~~~~~~~~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G   87 (208)
                      +.++.++..+|.+|||+++++++.+  |++++++.|+|+++||||||++++||++|++.+.|.++....+|.++|||++|
T Consensus         9 ~~~~~~~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G   88 (342)
T 4eye_A            9 MGTLEAQTQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAG   88 (342)
T ss_dssp             ---------CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEE
T ss_pred             ccCCcccccCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEE
Confidence            3344445668999999999987765  99999999999999999999999999999999999876545789999999999


Q ss_pred             EEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceE
Q 028493           88 VVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYT  167 (208)
Q Consensus        88 ~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~  167 (208)
                      +|+++|++|+ |++||||+....                              +|                   +|+||+
T Consensus        89 ~V~~vG~~v~-~~vGDrV~~~~~------------------------------~G-------------------~~aey~  118 (342)
T 4eye_A           89 VVRSAPEGSG-IKPGDRVMAFNF------------------------------IG-------------------GYAERV  118 (342)
T ss_dssp             EEEECCTTSS-CCTTCEEEEECS------------------------------SC-------------------CSBSEE
T ss_pred             EEEEECCCCC-CCCCCEEEEecC------------------------------CC-------------------cceEEE
Confidence            9999999999 999999986421                              23                   999999


Q ss_pred             EEecCcEEEcCCCCCccceeeccchhHHHhheee
Q 028493          168 VVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       168 ~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++...++++|+++++++||+++++++|||+++.
T Consensus       119 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~  152 (342)
T 4eye_A          119 AVAPSNILPTPPQLDDAEAVALIANYHTMYFAYA  152 (342)
T ss_dssp             EECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHH
T ss_pred             EEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHH
Confidence            9999999999999999999999999999999984

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=99.95  E-value=7.7e-28  Score=207.68  Aligned_cols=136  Identities=21%  Similarity=0.231  Sum_probs=123.4

Q ss_pred             ccceeeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCC
Q 028493           18 GKIIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (208)
Q Consensus        18 ~~~~~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~   95 (208)
                      .+|.+|||+++++++.+  +++++++.|+|+++||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++|++
T Consensus        24 ~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~  103 (353)
T 4dup_A           24 SLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPG  103 (353)
T ss_dssp             CCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEECTT
T ss_pred             CCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEECCC
Confidence            47888999999997765  9999999999999999999999999999999999987765567999999999999999999


Q ss_pred             CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEE
Q 028493           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (208)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~  175 (208)
                      |++|++||+|+....                              +|                   +|+||+++|.+.++
T Consensus       104 v~~~~vGdrV~~~~~------------------------------~G-------------------~~aey~~v~~~~~~  134 (353)
T 4dup_A          104 VSGYAVGDKVCGLAN------------------------------GG-------------------AYAEYCLLPAGQIL  134 (353)
T ss_dssp             CCSCCTTCEEEEECS------------------------------SC-------------------CSBSEEEEEGGGEE
T ss_pred             CCCCCCCCEEEEecC------------------------------CC-------------------ceeeEEEEcHHHcE
Confidence            999999999976421                              23                   99999999999999


Q ss_pred             EcCCCCCccceeeccchhHHHhheeee
Q 028493          176 KITPDIPLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       176 ~ip~~~~~~~aa~l~~~~~ta~~al~~  202 (208)
                      ++|+++++++||+++++++|||+++..
T Consensus       135 ~~P~~~~~~~aa~l~~~~~ta~~~l~~  161 (353)
T 4dup_A          135 PFPKGYDAVKAAALPETFFTVWANLFQ  161 (353)
T ss_dssp             ECCTTCCHHHHHTSHHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHhhhhhHHHHHHHHHHH
Confidence            999999999999999999999999843

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=99.95  E-value=1.2e-27  Score=205.61  Aligned_cols=139  Identities=21%  Similarity=0.285  Sum_probs=120.7

Q ss_pred             cceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC-CCCCCceeccceeEEEEEeCCCCC
Q 028493           19 KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-MAVFPRILGHEAVGVVESVGGGVE   97 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~-~~~~p~~~G~e~~G~Vv~vG~~v~   97 (208)
                      .|.+|||+++++++++|++++++.|+|+++||||||.+++||++|++.+.|..+. ..++|.++|||++|+|+++|++|+
T Consensus         4 ~~~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~   83 (343)
T 3gaz_A            4 TTPTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVD   83 (343)
T ss_dssp             --CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CchhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCC
Confidence            3578999999999888999999999999999999999999999999999987543 246899999999999999999999


Q ss_pred             CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      +|++||+|+....           +             . ...+|                   +|+||++++...++++
T Consensus        84 ~~~vGdrV~~~~~-----------g-------------~-~~~~G-------------------~~aey~~v~~~~~~~~  119 (343)
T 3gaz_A           84 SFRVGDAVFGLTG-----------G-------------V-GGLQG-------------------THAQFAAVDARLLASK  119 (343)
T ss_dssp             SCCTTCEEEEECC-----------S-------------S-TTCCC-------------------SSBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEEEeC-----------C-------------C-CCCCc-------------------ceeeEEEecHHHeeeC
Confidence            9999999986321           0             0 01224                   9999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhheee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      |+++++++|++++++++|||+++.
T Consensus       120 P~~~~~~~aa~l~~~~~ta~~~l~  143 (343)
T 3gaz_A          120 PAALTMRQASVLPLVFITAWEGLV  143 (343)
T ss_dssp             CTTSCHHHHHTSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHhhhhHHHHHHHHH
Confidence            999999999999999999999874

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=99.95  E-value=8.4e-28  Score=206.21  Aligned_cols=134  Identities=26%  Similarity=0.296  Sum_probs=121.8

Q ss_pred             ceeeeeEEEecCCCC---eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCC
Q 028493           20 IIRCRAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (208)
Q Consensus        20 ~~~~ka~~~~~~~~~---l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v   96 (208)
                      +++|||+++++++++   |++++++.|+|+++||+|||++++||++|++.+.|.++...++|.++|||++|+|+++|++|
T Consensus         2 ~~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~v   81 (340)
T 3gms_A            2 SLHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFV   81 (340)
T ss_dssp             CCEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTTS
T ss_pred             CcccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCCC
Confidence            357999999999987   99999999999999999999999999999999999876555789999999999999999999


Q ss_pred             CCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEE
Q 028493           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK  176 (208)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~  176 (208)
                      ++|++||+|+...                              .+|                   +|+||+++|...+++
T Consensus        82 ~~~~vGdrV~~~~------------------------------~~G-------------------~~aey~~v~~~~~~~  112 (340)
T 3gms_A           82 SRELIGKRVLPLR------------------------------GEG-------------------TWQEYVKTSADFVVP  112 (340)
T ss_dssp             CGGGTTCEEEECS------------------------------SSC-------------------SSBSEEEEEGGGEEE
T ss_pred             CCCCCCCEEEecC------------------------------CCc-------------------cceeEEEcCHHHeEE
Confidence            9999999997531                              123                   999999999999999


Q ss_pred             cCCCCCccceeeccchhHHHhheeee
Q 028493          177 ITPDIPLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       177 ip~~~~~~~aa~l~~~~~ta~~al~~  202 (208)
                      +|+++++++||++++..+|||+++..
T Consensus       113 vP~~l~~~~aa~l~~~~~ta~~~~~~  138 (340)
T 3gms_A          113 IPDSIDDFTAAQMYINPLTAWVTCTE  138 (340)
T ss_dssp             CCTTSCHHHHTTSSHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHhhhcchHHHHHHHHHH
Confidence            99999999999999999999998754

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=99.95  E-value=1.9e-27  Score=201.87  Aligned_cols=133  Identities=17%  Similarity=0.269  Sum_probs=118.5

Q ss_pred             eeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        21 ~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      .+|||+++++..+.|++++++.|+|+++||||||++++||++|++.+.|.++. .++|.++|||++|+|+++|++|++|+
T Consensus         3 ~tMka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~   81 (315)
T 3goh_A            3 EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPIN-WSNGHVPGVDGAGVIVKVGAKVDSKM   81 (315)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTC-CCTTCCCCSEEEEEEEEECTTSCGGG
T ss_pred             cceEEEEEeCCCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCc-CCCCCEeeeeeEEEEEEeCCCCCCCC
Confidence            46999999952333999999999999999999999999999999999988764 57899999999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||||+....                           ...+|                   +|+||+++|.+.++++|++
T Consensus        82 vGdrV~~~~~---------------------------~~~~G-------------------~~aey~~v~~~~~~~iP~~  115 (315)
T 3goh_A           82 LGRRVAYHTS---------------------------LKRHG-------------------SFAEFTVLNTDRVMTLPDN  115 (315)
T ss_dssp             TTCEEEEECC---------------------------TTSCC-------------------SSBSEEEEETTSEEECCTT
T ss_pred             CCCEEEEeCC---------------------------CCCCc-------------------ccccEEEEcHHHhccCcCC
Confidence            9999987531                           12234                   9999999999999999999


Q ss_pred             CCccceeeccchhHHHhhee
Q 028493          181 IPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al  200 (208)
                      +++++||+++++++|||+++
T Consensus       116 ~~~~~aa~l~~~~~ta~~al  135 (315)
T 3goh_A          116 LSFERAAALPCPLLTAWQAF  135 (315)
T ss_dssp             SCHHHHHTSHHHHHHHHHHH
T ss_pred             CCHHHHhhCccHHHHHHHHH
Confidence            99999999999999999998

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.3e-27  Score=204.25  Aligned_cols=133  Identities=22%  Similarity=0.295  Sum_probs=120.9

Q ss_pred             eeeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC
Q 028493           21 IRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        21 ~~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      ++|||+++++++.+  |++++++.|+|+++||+|||++++||++|++.+.|.++....+|.++|||++|+|+++|++|++
T Consensus         2 m~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~   81 (349)
T 4a27_A            2 MEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKG   81 (349)
T ss_dssp             CCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCS
T ss_pred             ceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCC
Confidence            57999999998853  9999999999999999999999999999999999987655678999999999999999999999


Q ss_pred             CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (208)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip  178 (208)
                      |++||+|+....                              +|                   +|+||++++...++++|
T Consensus        82 ~~~GdrV~~~~~------------------------------~G-------------------~~aey~~v~~~~~~~iP  112 (349)
T 4a27_A           82 YEIGDRVMAFVN------------------------------YN-------------------AWAEVVCTPVEFVYKIP  112 (349)
T ss_dssp             CCTTCEEEEECS------------------------------SC-------------------CSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEEecC------------------------------CC-------------------cceEEEEecHHHeEECC
Confidence            999999986421                              23                   99999999999999999


Q ss_pred             CCCCccceeeccchhHHHhheeee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al~~  202 (208)
                      +++++++||+++++++|||+++..
T Consensus       113 ~~~~~~~aa~l~~~~~ta~~~l~~  136 (349)
T 4a27_A          113 DDMSFSEAAAFPMNFVTAYVMLFE  136 (349)
T ss_dssp             TTSCHHHHHTSHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998743

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=99.94  E-value=1.3e-27  Score=205.63  Aligned_cols=137  Identities=20%  Similarity=0.165  Sum_probs=117.0

Q ss_pred             ccceeeeeEEEe--cC---CCCeEEEEe---------ecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceecc
Q 028493           18 GKIIRCRAAISR--IP---GKPLVMEEI---------EVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH   83 (208)
Q Consensus        18 ~~~~~~ka~~~~--~~---~~~l~~~~~---------~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~   83 (208)
                      .+|.+|||++++  ++   .+.++++++         +.|+|+++||||||++++||++|++.+.|.++....+|.++||
T Consensus         6 ~~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~   85 (349)
T 3pi7_A            6 TIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGF   85 (349)
T ss_dssp             CCCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTSBCCS
T ss_pred             CCchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCCCccc
Confidence            367889999999  32   233777787         9999999999999999999999999999987654578999999


Q ss_pred             ceeEEEEEeCCCC-CCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCccc
Q 028493           84 EAVGVVESVGGGV-EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSS  162 (208)
Q Consensus        84 e~~G~Vv~vG~~v-~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~  162 (208)
                      |++|+|+++|++| ++|++||+|+...                           |...+|                   +
T Consensus        86 E~~G~V~~vG~~v~~~~~vGdrV~~~~---------------------------g~~~~G-------------------~  119 (349)
T 3pi7_A           86 EGVGTIVAGGDEPYAKSLVGKRVAFAT---------------------------GLSNWG-------------------S  119 (349)
T ss_dssp             EEEEEEEEECSSHHHHHHTTCEEEEEC---------------------------TTSSCC-------------------S
T ss_pred             eEEEEEEEECCCccCCCCCCCEEEEec---------------------------cCCCCc-------------------c
Confidence            9999999999999 9999999998652                           122234                   9


Q ss_pred             ccceEEEecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493          163 FTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       163 ~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      |+||+++|...++++|+++++++||++++..+|||+++
T Consensus       120 ~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~  157 (349)
T 3pi7_A          120 WAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMF  157 (349)
T ss_dssp             SBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHHH
T ss_pred             ceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHHH
Confidence            99999999999999999999999999999999999654

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=99.94  E-value=5.2e-27  Score=202.53  Aligned_cols=137  Identities=23%  Similarity=0.287  Sum_probs=118.4

Q ss_pred             ccccceeeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeC
Q 028493           16 TAGKIIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVG   93 (208)
Q Consensus        16 ~~~~~~~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG   93 (208)
                      +...+.+|||+++++++.+  |++++++.|+|+++||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++|
T Consensus        16 ~~~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG   95 (354)
T 2j8z_A           16 ENLYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELG   95 (354)
T ss_dssp             -----CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEEC
T ss_pred             cccchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEEC
Confidence            3456788999999988853  89999999999999999999999999999999999776534578999999999999999


Q ss_pred             CCC-CCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC
Q 028493           94 GGV-EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT  172 (208)
Q Consensus        94 ~~v-~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~  172 (208)
                      ++| ++|++||+|++...                              .|                   +|+||+++|..
T Consensus        96 ~~v~~~~~vGdrV~~~~~------------------------------~G-------------------~~aey~~v~~~  126 (354)
T 2j8z_A           96 PGCQGHWKIGDTAMALLP------------------------------GG-------------------GQAQYVTVPEG  126 (354)
T ss_dssp             SCC--CCCTTCEEEEECS------------------------------SC-------------------CSBSEEEEEGG
T ss_pred             CCcCCCCCCCCEEEEecC------------------------------CC-------------------cceeEEEeCHH
Confidence            999 99999999986421                              13                   99999999999


Q ss_pred             cEEEcCCCCCccceeeccchhHHHhheee
Q 028493          173 HVVKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       173 ~v~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      .++++|+++++++||+++++++|||+++.
T Consensus       127 ~~~~iP~~ls~~~aa~l~~~~~tA~~al~  155 (354)
T 2j8z_A          127 LLMPIPEGLTLTQAAAIPEAWLTAFQLLH  155 (354)
T ss_dssp             GEEECCTTCCHHHHTTSHHHHHHHHHHHT
T ss_pred             HcEECCCCCCHHHHHhccchHHHHHHHHH
Confidence            99999999999999999999999999984

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=99.94  E-value=4.7e-27  Score=202.94  Aligned_cols=136  Identities=24%  Similarity=0.413  Sum_probs=121.3

Q ss_pred             ccceeeeeEEEecCCCC---eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCC
Q 028493           18 GKIIRCRAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG   94 (208)
Q Consensus        18 ~~~~~~ka~~~~~~~~~---l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~   94 (208)
                      .+|.+|||+++.+++.+   +++++++.|+|+++||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++|+
T Consensus        22 ~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~  101 (357)
T 1zsy_A           22 SMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVGS  101 (357)
T ss_dssp             CCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEECT
T ss_pred             hCchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEeCC
Confidence            36778999999998875   889999999999999999999999999999999997665345799999999999999999


Q ss_pred             CCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcE
Q 028493           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (208)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v  174 (208)
                      +|++|++||+|+....                             .+|                   +|+||++++.+.+
T Consensus       102 ~v~~~~vGdrV~~~~~-----------------------------~~G-------------------~~aey~~v~~~~~  133 (357)
T 1zsy_A          102 NVTGLKPGDWVIPANA-----------------------------GLG-------------------TWRTEAVFSEEAL  133 (357)
T ss_dssp             TCCSCCTTCEEEESSS-----------------------------CSC-------------------CSBSEEEEEGGGE
T ss_pred             CCCCCCCCCEEEEcCC-----------------------------CCc-------------------cceeEEecCHHHc
Confidence            9999999999986421                             123                   9999999999999


Q ss_pred             EEcCCCCCccceeeccchhHHHhheee
Q 028493          175 VKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       175 ~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++|+++++++||++++.++|||+++.
T Consensus       134 ~~iP~~l~~~~Aa~l~~~~~ta~~~l~  160 (357)
T 1zsy_A          134 IQVPSDIPLQSAATLGVNPCTAYRMLM  160 (357)
T ss_dssp             EEECSSSCHHHHHHTTSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHhhhcccHHHHHHHHH
Confidence            999999999999999988999999874

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=99.94  E-value=6.6e-27  Score=203.15  Aligned_cols=138  Identities=20%  Similarity=0.242  Sum_probs=116.9

Q ss_pred             cceeeeeEEEecCCCCeEEE-EeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC
Q 028493           19 KIIRCRAAISRIPGKPLVME-EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~~l~~~-~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~   97 (208)
                      +|.+|||+++++++. |+++ +++.|+|+++||||||.+++||++|++.+.+.    ...|.++|||++|+|+++|++|+
T Consensus         8 ~p~~mkA~v~~~~~~-l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~----~~~p~v~G~e~~G~V~~vG~~v~   82 (371)
T 3gqv_A            8 PPPQQTALTVNDHDE-VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF----ATPWAFLGTDYAGTVVAVGSDVT   82 (371)
T ss_dssp             CCSCEEEEEECTTSC-EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC---------CCTTSCCCSEEEEEEEEECTTCC
T ss_pred             CchhceeEEEcCCCc-eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC----CCCCccCccccEEEEEEeCCCCC
Confidence            678899999999876 9998 99999999999999999999999999988763    24589999999999999999999


Q ss_pred             CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      +|++||||+..       |..|+.+               ...+|                   +|+||++++...++++
T Consensus        83 ~~~~GdrV~~~-------~~~~~~~---------------~~~~G-------------------~~aey~~v~~~~~~~~  121 (371)
T 3gqv_A           83 HIQVGDRVYGA-------QNEMCPR---------------TPDQG-------------------AFSQYTVTRGRVWAKI  121 (371)
T ss_dssp             SCCTTCEEEEE-------CCTTCTT---------------CTTCC-------------------SSBSEEECCTTCEEEC
T ss_pred             CCCCCCEEEEe-------ccCCCCC---------------CCCCC-------------------cCcCeEEEchhheEEC
Confidence            99999999654       3444432               12234                   9999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhheeee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al~~  202 (208)
                      |+++++++|+++++++.|||++|..
T Consensus       122 P~~~~~~~aa~~~~~~~ta~~~l~~  146 (371)
T 3gqv_A          122 PKGLSFEQAAALPAGISTAGLAMKL  146 (371)
T ss_dssp             CTTCCHHHHHTSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHhhhhhhHHHHHHHHHh
Confidence            9999999999999999999998843

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=99.94  E-value=4.4e-27  Score=203.80  Aligned_cols=137  Identities=23%  Similarity=0.242  Sum_probs=118.7

Q ss_pred             cceeeeeEEEecC---CC--CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeC
Q 028493           19 KIIRCRAAISRIP---GK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVG   93 (208)
Q Consensus        19 ~~~~~ka~~~~~~---~~--~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG   93 (208)
                      ..++|||++++++   +.  .+++++++.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|
T Consensus        19 ~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG   97 (363)
T 4dvj_A           19 YFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPD-GTDWKVIGYDAAGIVSAVG   97 (363)
T ss_dssp             CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC---CCSBCCCCCEEEEEEEEC
T ss_pred             hhheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCC-CCCCCcccceeEEEEEEeC
Confidence            4467999999876   22  2999999999999999999999999999999999988764 4788999999999999999


Q ss_pred             CCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCc
Q 028493           94 GGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH  173 (208)
Q Consensus        94 ~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~  173 (208)
                      ++|++|++||+|+...                           +...+|                   +|+||+++|...
T Consensus        98 ~~v~~~~vGdrV~~~~---------------------------~~~~~G-------------------~~aey~~v~~~~  131 (363)
T 4dvj_A           98 PDVTLFRPGDEVFYAG---------------------------SIIRPG-------------------TNAEFHLVDERI  131 (363)
T ss_dssp             TTCCSCCTTCEEEECC---------------------------CTTSCC-------------------SCBSEEEEEGGG
T ss_pred             CCCCCCCCCCEEEEcc---------------------------CCCCCc-------------------cceEEEEeCHHH
Confidence            9999999999998531                           111234                   999999999999


Q ss_pred             EEEcCCCCCccceeeccchhHHHhheeee
Q 028493          174 VVKITPDIPLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       174 v~~ip~~~~~~~aa~l~~~~~ta~~al~~  202 (208)
                      ++++|+++++++||+++++++|||+++..
T Consensus       132 ~~~iP~~~~~~~aa~l~~~~~ta~~al~~  160 (363)
T 4dvj_A          132 VGRKPKTLDWAEAAALPLTSITAWEAFFD  160 (363)
T ss_dssp             CEECCTTSCHHHHHTSHHHHHHHHHHHHT
T ss_pred             eeECCCCCCHHHHHhhhhHHHHHHHHHHH
Confidence            99999999999999999999999998743

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=99.94  E-value=8.1e-27  Score=201.29  Aligned_cols=135  Identities=21%  Similarity=0.293  Sum_probs=118.6

Q ss_pred             cceeeeeEEEecCCCC--eEE-EEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCC
Q 028493           19 KIIRCRAAISRIPGKP--LVM-EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~~--l~~-~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~   95 (208)
                      .+.+|||+++++++.+  +++ ++++.|+|+++||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++|++
T Consensus        26 ~~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~  105 (351)
T 1yb5_A           26 GQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDN  105 (351)
T ss_dssp             --CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTT
T ss_pred             CcceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCC
Confidence            3567999999987754  888 8999999999999999999999999999999876543467999999999999999999


Q ss_pred             CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEE
Q 028493           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (208)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~  175 (208)
                      |++|++||||+....                             ..|                   +|+||+++|.+.++
T Consensus       106 v~~~~vGdrV~~~~~-----------------------------~~G-------------------~~aey~~v~~~~~~  137 (351)
T 1yb5_A          106 ASAFKKGDRVFTSST-----------------------------ISG-------------------GYAEYALAADHTVY  137 (351)
T ss_dssp             CTTCCTTCEEEESCC-----------------------------SSC-------------------SSBSEEEEEGGGEE
T ss_pred             CCCCCCCCEEEEeCC-----------------------------CCC-------------------cceeEEEECHHHeE
Confidence            999999999976321                             123                   99999999999999


Q ss_pred             EcCCCCCccceeeccchhHHHhheee
Q 028493          176 KITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       176 ~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++|+++++++||+++++++|||+++.
T Consensus       138 ~~P~~l~~~~aA~l~~~~~ta~~al~  163 (351)
T 1yb5_A          138 KLPEKLDFKQGAAIGIPYFTAYRALI  163 (351)
T ss_dssp             ECCTTSCHHHHTTTHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHhhhhHHHHHHHHHH
Confidence            99999999999999999999999985

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=99.94  E-value=1.1e-26  Score=197.85  Aligned_cols=135  Identities=19%  Similarity=0.172  Sum_probs=118.3

Q ss_pred             eeeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCC--C--CCCCCCceeccceeEEEEEeCC
Q 028493           21 IRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ--P--PMAVFPRILGHEAVGVVESVGG   94 (208)
Q Consensus        21 ~~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~--~--~~~~~p~~~G~e~~G~Vv~vG~   94 (208)
                      ++|||+++++++.+  |++++++.|+|+++||||||++++||++|++.+.|..  +  ....+|.++|||++|+|+++|+
T Consensus         5 ~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG~   84 (321)
T 3tqh_A            5 KEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGS   84 (321)
T ss_dssp             CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEECT
T ss_pred             ccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeCC
Confidence            46999999998876  9999999999999999999999999999999998831  0  1246789999999999999999


Q ss_pred             CCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcE
Q 028493           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (208)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v  174 (208)
                      +|++|++||+|+......                          ..+|                   +|+||++++.+.+
T Consensus        85 ~v~~~~~GdrV~~~~~~~--------------------------~~~G-------------------~~aey~~v~~~~~  119 (321)
T 3tqh_A           85 DVNNVNIGDKVMGIAGFP--------------------------DHPC-------------------CYAEYVCASPDTI  119 (321)
T ss_dssp             TCCSCCTTCEEEEECSTT--------------------------TCCC-------------------CSBSEEEECGGGE
T ss_pred             CCCCCCCCCEEEEccCCC--------------------------CCCC-------------------cceEEEEecHHHh
Confidence            999999999998753210                          1123                   9999999999999


Q ss_pred             EEcCCCCCccceeeccchhHHHhhee
Q 028493          175 VKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       175 ~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      +++|+++++++||+++++++|||+++
T Consensus       120 ~~iP~~~~~~~aa~l~~~~~ta~~al  145 (321)
T 3tqh_A          120 IQKLEKLSFLQAASLPTAGLTALQAL  145 (321)
T ss_dssp             EECCTTSCHHHHHHSHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHhhhhhHHHHHHHHH
Confidence            99999999999999999999999987

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=99.94  E-value=1.9e-26  Score=197.27  Aligned_cols=131  Identities=22%  Similarity=0.191  Sum_probs=119.7

Q ss_pred             cceeeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCC
Q 028493           19 KIIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v   96 (208)
                      .|.+|||+++++++.+  |++++++.|+|+++||||||++++||++|++++.|.++.  ++|.++|||++|+|+++|++|
T Consensus         5 ~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~P~i~G~e~~G~V~~vG~~v   82 (334)
T 3qwb_A            5 IPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC--EKPYVLGREASGTVVAKGKGV   82 (334)
T ss_dssp             CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSCC--CSSEECCSEEEEEEEEECTTC
T ss_pred             CchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC--CCCCccccceEEEEEEECCCC
Confidence            6788999999998875  999999999999999999999999999999999998765  689999999999999999999


Q ss_pred             CCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEe-cCcEE
Q 028493           97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD-VTHVV  175 (208)
Q Consensus        97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~-~~~v~  175 (208)
                      ++|++||||+...                               +|                   +|+||++++ ...++
T Consensus        83 ~~~~~GdrV~~~~-------------------------------~G-------------------~~aey~~v~~~~~~~  112 (334)
T 3qwb_A           83 TNFEVGDQVAYIS-------------------------------NS-------------------TFAQYSKISSQGPVM  112 (334)
T ss_dssp             CSCCTTCEEEEEC-------------------------------SS-------------------CSBSEEEEETTSSEE
T ss_pred             CCCCCCCEEEEee-------------------------------CC-------------------cceEEEEecCcceEE
Confidence            9999999998631                               13                   999999999 99999


Q ss_pred             EcCCCCCccc---eeeccchhHHHhheee
Q 028493          176 KITPDIPLDI---ACLLSCGVSTGNYRTL  201 (208)
Q Consensus       176 ~ip~~~~~~~---aa~l~~~~~ta~~al~  201 (208)
                      ++|+++++++   ++++++.+.|||+++.
T Consensus       113 ~~P~~~~~~~~~~aa~~~~~~~ta~~~l~  141 (334)
T 3qwb_A          113 KLPKGTSDEELKLYAAGLLQVLTALSFTN  141 (334)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHhhhhhhhhhHHHHHHHHHH
Confidence            9999999999   7888889999999874

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=99.94  E-value=1.4e-26  Score=199.18  Aligned_cols=133  Identities=26%  Similarity=0.295  Sum_probs=117.0

Q ss_pred             eeeeeEEEecCC-----CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCC
Q 028493           21 IRCRAAISRIPG-----KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (208)
Q Consensus        21 ~~~ka~~~~~~~-----~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~   95 (208)
                      ++|||+++++++     ..|++++++.|+|+++||+|||++++||++|++.+.|. .  ..+|.++|||++|+|+++|++
T Consensus         1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~-~--~~~p~i~G~e~~G~V~~vG~~   77 (346)
T 3fbg_A            1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD-V--SKAPRVLGFDAIGVVESVGNE   77 (346)
T ss_dssp             -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSC-C--SSSCBCCCCCEEEEEEEECTT
T ss_pred             CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC-C--CCCCcCcCCccEEEEEEeCCC
Confidence            469999999876     24999999999999999999999999999999999887 2  367999999999999999999


Q ss_pred             CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEE
Q 028493           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (208)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~  175 (208)
                      |++|++||+|+....                           ...+|                   +|+||+++|...++
T Consensus        78 v~~~~~GdrV~~~~~---------------------------~~~~G-------------------~~aey~~v~~~~~~  111 (346)
T 3fbg_A           78 VTMFNQGDIVYYSGS---------------------------PDQNG-------------------SNAEYQLINERLVA  111 (346)
T ss_dssp             CCSCCTTCEEEECCC---------------------------TTSCC-------------------SSBSEEEEEGGGEE
T ss_pred             CCcCCCCCEEEEcCC---------------------------CCCCc-------------------ceeEEEEEChHHeE
Confidence            999999999985311                           11234                   99999999999999


Q ss_pred             EcCCCCCccceeeccchhHHHhheeee
Q 028493          176 KITPDIPLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       176 ~ip~~~~~~~aa~l~~~~~ta~~al~~  202 (208)
                      ++|+++++++|+++++++.|||++|..
T Consensus       112 ~iP~~~~~~~aa~~~~~~~ta~~~l~~  138 (346)
T 3fbg_A          112 KAPKNISAEQAVSLPLTGITAYETLFD  138 (346)
T ss_dssp             ECCSSSCHHHHTTSHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHhhhcchhHHHHHHHHHH
Confidence            999999999999999999999998843

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=99.94  E-value=1.4e-26  Score=197.43  Aligned_cols=132  Identities=24%  Similarity=0.299  Sum_probs=119.1

Q ss_pred             eeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493           22 RCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        22 ~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      +|||+++++++.+  |++++++.|+|+++||+|||++++||++|++.+.|.++. .++|.++|||++|+|+++|++|++|
T Consensus         1 MMkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~e~~G~V~~vG~~v~~~   79 (325)
T 3jyn_A            1 MAKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA-PFLPSGLGAEGAGVVEAVGDEVTRF   79 (325)
T ss_dssp             CEEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             CcEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC-CCCCCCCCceeEEEEEEECCCCCCC
Confidence            3899999998876  999999999999999999999999999999999998765 5689999999999999999999999


Q ss_pred             CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (208)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~  179 (208)
                      ++||+|+...                             ..+|                   +|+||+++|.+.++++|+
T Consensus        80 ~~GdrV~~~~-----------------------------~~~G-------------------~~aey~~v~~~~~~~~P~  111 (325)
T 3jyn_A           80 KVGDRVAYGT-----------------------------GPLG-------------------AYSEVHVLPEANLVKLAD  111 (325)
T ss_dssp             CTTCEEEESS-----------------------------SSSC-------------------CSBSEEEEEGGGEEECCT
T ss_pred             CCCCEEEEec-----------------------------CCCc-------------------cccceEEecHHHeEECCC
Confidence            9999997531                             1124                   999999999999999999


Q ss_pred             CCCccceeeccchhHHHhheeee
Q 028493          180 DIPLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al~~  202 (208)
                      ++++++|+++++...|+|+++..
T Consensus       112 ~~~~~~aa~l~~~~~ta~~~l~~  134 (325)
T 3jyn_A          112 SVSFEQAAALMLKGLTVQYLLRQ  134 (325)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHhhhhhhHHHHHHHHHH
Confidence            99999999988999999998754

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=99.93  E-value=3.6e-26  Score=194.44  Aligned_cols=134  Identities=18%  Similarity=0.158  Sum_probs=118.5

Q ss_pred             eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      |||+++++++++  |++++++.|+|+++||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++|  +++|+
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~   78 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH   78 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence            799999999876  88999999999999999999999999999999999876555789999999999999998  68999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||||++..   |                     ..|...+|                   +|+||+++|.+.++++|++
T Consensus        79 vGdrV~~~~---~---------------------~~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  115 (324)
T 3nx4_A           79 AGQEVLLTG---W---------------------GVGENHWG-------------------GLAERARVKGDWLVALPAG  115 (324)
T ss_dssp             TTCEEEEEC---T---------------------TBTTTBCC-------------------SSBSEEEECGGGCEECCTT
T ss_pred             CCCEEEEcc---c---------------------ccCCCCCC-------------------ceeeEEecCHHHcEECCCC
Confidence            999998753   1                     12233344                   9999999999999999999


Q ss_pred             CCccceeeccchhHHHhheee
Q 028493          181 IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++||++++++.|||.+|.
T Consensus       116 ~~~~~aa~l~~~~~ta~~al~  136 (324)
T 3nx4_A          116 LSSRNAMIIGTAGFTAMLCVM  136 (324)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHhhhHHHHHHHHHH
Confidence            999999999999999998874

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=99.93  E-value=7.1e-26  Score=195.64  Aligned_cols=135  Identities=21%  Similarity=0.301  Sum_probs=118.6

Q ss_pred             ceeeeeEEEecCCCC---eEEEEeecCCCC--CCeEEEEEEeeeCChhhhhhhcCCCCCCCCCC---------ceeccce
Q 028493           20 IIRCRAAISRIPGKP---LVMEEIEVDPPK--AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFP---------RILGHEA   85 (208)
Q Consensus        20 ~~~~ka~~~~~~~~~---l~~~~~~~p~~~--~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p---------~~~G~e~   85 (208)
                      +++|||+++++++.+   +++++++.|.|+  ++||+|||.+++||++|++.+.|.++....+|         .++|||+
T Consensus         1 ~~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~   80 (364)
T 1gu7_A            1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (364)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCcee
Confidence            367999999999875   899999999887  99999999999999999999998765433456         8999999


Q ss_pred             eEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccc
Q 028493           86 VGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTE  165 (208)
Q Consensus        86 ~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e  165 (208)
                      +|+|+++|++|++|++||+|+....                             .+|                   +|+|
T Consensus        81 ~G~V~~vG~~v~~~~vGdrV~~~~~-----------------------------~~G-------------------~~ae  112 (364)
T 1gu7_A           81 LFEVIKVGSNVSSLEAGDWVIPSHV-----------------------------NFG-------------------TWRT  112 (364)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS-----------------------------CCC-------------------CSBS
T ss_pred             EEEEEEeCCCCCcCCCCCEEEecCC-----------------------------CCC-------------------cchh
Confidence            9999999999999999999986421                             123                   9999


Q ss_pred             eEEEecCcEEEcCC-----------CCCccceeeccchhHHHhheeee
Q 028493          166 YTVVDVTHVVKITP-----------DIPLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       166 ~~~v~~~~v~~ip~-----------~~~~~~aa~l~~~~~ta~~al~~  202 (208)
                      |++++...++++|+           ++++++||+++++++|||+++..
T Consensus       113 y~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~  160 (364)
T 1gu7_A          113 HALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTH  160 (364)
T ss_dssp             EEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHS
T ss_pred             eEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHH
Confidence            99999999999998           89999999999999999999853

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=99.93  E-value=1.5e-25  Score=194.67  Aligned_cols=137  Identities=22%  Similarity=0.206  Sum_probs=118.3

Q ss_pred             cceeeeeEEEecCCCC--eEE-EEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCC--------------CCCCCCce
Q 028493           19 KIIRCRAAISRIPGKP--LVM-EEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQP--------------PMAVFPRI   80 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~~--l~~-~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~--------------~~~~~p~~   80 (208)
                      ++.+|||+++++++.+  +++ ++++.|.| +++||||||.+++||++|++.+.|..+              ....+|.+
T Consensus        18 ~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~v   97 (375)
T 2vn8_A           18 LYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLT   97 (375)
T ss_dssp             CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSBC
T ss_pred             cCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCcc
Confidence            5677999999998754  888 99999985 999999999999999999999988531              11237899


Q ss_pred             eccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCc
Q 028493           81 LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNV  160 (208)
Q Consensus        81 ~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~  160 (208)
                      +|||++|+|+++|++|++|++||+|++...                           ...+|                  
T Consensus        98 ~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~---------------------------~~~~G------------------  132 (375)
T 2vn8_A           98 LGRDVSGVVMECGLDVKYFKPGDEVWAAVP---------------------------PWKQG------------------  132 (375)
T ss_dssp             CCCEEEEEEEEECTTCCSCCTTCEEEEECC---------------------------TTSCC------------------
T ss_pred             cceeeeEEEEEeCCCCCCCCCCCEEEEecC---------------------------CCCCc------------------
Confidence            999999999999999999999999987531                           01124                  


Q ss_pred             ccccceEEEecCcEEEcCCCCCccceeeccchhHHHhheee
Q 028493          161 SSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       161 g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                       +|+||++++.+.++++|+++++++||+++++++|||+++.
T Consensus       133 -~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~  172 (375)
T 2vn8_A          133 -TLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAIN  172 (375)
T ss_dssp             -SSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHT
T ss_pred             -cceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHH
Confidence             9999999999999999999999999999999999999984

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.93  E-value=1.7e-25  Score=190.62  Aligned_cols=131  Identities=22%  Similarity=0.287  Sum_probs=115.4

Q ss_pred             eeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493           22 RCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        22 ~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      +|||+++++++.+  +++++++.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|
T Consensus         1 ~Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~   79 (327)
T 1qor_A            1 MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVKHI   79 (327)
T ss_dssp             -CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCSCEEEEEEEECTTCCSC
T ss_pred             CcEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCCCCceeEEEEEEECCCCCCC
Confidence            3899999987754  899999999999999999999999999999999987643 3579999999999999999999999


Q ss_pred             CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (208)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~  179 (208)
                      ++||||. .+.                            ..+|                   +|+||+++|...++++|+
T Consensus        80 ~~GdrV~-~~g----------------------------~~~G-------------------~~aey~~v~~~~~~~iP~  111 (327)
T 1qor_A           80 KAGDRVV-YAQ----------------------------SALG-------------------AYSSVHNIIADKAAILPA  111 (327)
T ss_dssp             CTTCEEE-ESC----------------------------CSSC-------------------CSBSEEEEEGGGEEECCT
T ss_pred             CCCCEEE-ECC----------------------------CCCc-------------------eeeeEEEecHHHcEECCC
Confidence            9999993 210                            0113                   999999999999999999


Q ss_pred             CCCccceeeccchhHHHhheee
Q 028493          180 DIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++++++||+++++++|||+++.
T Consensus       112 ~l~~~~aa~l~~~~~ta~~al~  133 (327)
T 1qor_A          112 AISFEQAAASFLKGLTVYYLLR  133 (327)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHhhhHHHHHHHHHH
Confidence            9999999999999999999985

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=99.93  E-value=1.5e-25  Score=191.52  Aligned_cols=131  Identities=27%  Similarity=0.385  Sum_probs=112.1

Q ss_pred             eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCC-CCC-CCCCceeccceeEEEEEeCCCCCC
Q 028493           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ-PPM-AVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~-~~~-~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      |||+++++++.+  |++++++.|+|+++||||||.+++||++|++.+.|.+ +.. ..+|.++|||++|+|+++|++|++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD   81 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred             cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence            899999988754  8999999999999999999999999999999999865 211 357899999999999999999999


Q ss_pred             CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (208)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip  178 (208)
                      |++||+|+....                             ..|                   +|+||+++|...++++|
T Consensus        82 ~~~GdrV~~~~~-----------------------------~~G-------------------~~aey~~v~~~~~~~iP  113 (333)
T 1wly_A           82 FTVGERVCTCLP-----------------------------PLG-------------------AYSQERLYPAEKLIKVP  113 (333)
T ss_dssp             CCTTCEEEECSS-----------------------------SCC-------------------CSBSEEEEEGGGCEECC
T ss_pred             CCCCCEEEEecC-----------------------------CCC-------------------cceeEEEecHHHcEeCC
Confidence            999999965310                             123                   99999999999999999


Q ss_pred             CCCCccc--eeeccchhHHHhheee
Q 028493          179 PDIPLDI--ACLLSCGVSTGNYRTL  201 (208)
Q Consensus       179 ~~~~~~~--aa~l~~~~~ta~~al~  201 (208)
                      +++++++  ||+++++++|||+++.
T Consensus       114 ~~~~~~~~~aa~l~~~~~ta~~~l~  138 (333)
T 1wly_A          114 KDLDLDDVHLAGLMLKGMTAQYLLH  138 (333)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHhCccchhhhHHHHHHHHH
Confidence            9999999  8889999999999985

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=99.93  E-value=1.6e-25  Score=191.00  Aligned_cols=137  Identities=20%  Similarity=0.230  Sum_probs=116.5

Q ss_pred             ceeeeeEEEecCCC--CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC
Q 028493           20 IIRCRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (208)
Q Consensus        20 ~~~~ka~~~~~~~~--~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~   97 (208)
                      +.+|||+++++++.  .+++++++.|+|+++||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++  +++
T Consensus         2 ~~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v~   79 (330)
T 1tt7_A            2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--NDP   79 (330)
T ss_dssp             CCEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SST
T ss_pred             CCcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CCC
Confidence            46799999998763  48999999999999999999999999999999999876543467999999999999996  468


Q ss_pred             CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      +|++||||+....                        ..|...+|                   +|+||+++|.+.++++
T Consensus        80 ~~~vGdrV~~~~~------------------------~~g~~~~G-------------------~~aey~~v~~~~~~~i  116 (330)
T 1tt7_A           80 RFAEGDEVIATSY------------------------ELGVSRDG-------------------GLSEYASVPGDWLVPL  116 (330)
T ss_dssp             TCCTTCEEEEEST------------------------TBTTTBCC-------------------SSBSSEEECGGGEEEC
T ss_pred             CCCCCCEEEEccc------------------------ccCCCCCc-------------------cceeEEEecHHHeEEC
Confidence            8999999987521                        02222334                   9999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhheee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      |+++++++||++++++.|||.++.
T Consensus       117 P~~l~~~~aa~l~~~~~ta~~~l~  140 (330)
T 1tt7_A          117 PQNLSLKEAMVYGTAGFTAALSVH  140 (330)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHhhccchHHHHHHHHH
Confidence            999999999999999999997753

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=99.92  E-value=1.4e-24  Score=187.83  Aligned_cols=131  Identities=18%  Similarity=0.191  Sum_probs=114.8

Q ss_pred             cceeeeeEEEecCCC----CeEE-EEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeC
Q 028493           19 KIIRCRAAISRIPGK----PLVM-EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVG   93 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~----~l~~-~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG   93 (208)
                      .+.+|||+++++++.    .+++ ++++.|+|+++||||||.+++||++|++.+.|.++....+|.++|||++|+|+++|
T Consensus        20 ~~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG   99 (362)
T 2c0c_A           20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALG   99 (362)
T ss_dssp             HCCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEEC
T ss_pred             chhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEEC
Confidence            567899999999875    3889 99999999999999999999999999999999765434679999999999999999


Q ss_pred             CCCC-CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC
Q 028493           94 GGVE-EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT  172 (208)
Q Consensus        94 ~~v~-~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~  172 (208)
                      ++|+ +|++||||+...                               +|                   +|+||+++|.+
T Consensus       100 ~~V~~~~~vGdrV~~~~-------------------------------~G-------------------~~aey~~v~~~  129 (362)
T 2c0c_A          100 LSASARYTVGQAVAYMA-------------------------------PG-------------------SFAEYTVVPAS  129 (362)
T ss_dssp             TTGGGTCCTTCEEEEEC-------------------------------SC-------------------CSBSEEEEEGG
T ss_pred             CCccCCCCCCCEEEEcc-------------------------------CC-------------------cceeEEEEcHH
Confidence            9999 999999998641                               13                   99999999999


Q ss_pred             cEEEcCCCCCccceeeccchhHHHhheee
Q 028493          173 HVVKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       173 ~v~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      .++++|+. + .+++++++.++|||+++.
T Consensus       130 ~~~~~P~~-~-~~aaal~~~~~ta~~al~  156 (362)
T 2c0c_A          130 IATPVPSV-K-PEYLTLLVSGTTAYISLK  156 (362)
T ss_dssp             GCEECSSS-C-HHHHTTTTHHHHHHHHHH
T ss_pred             HeEECCCC-c-hHhhcccchHHHHHHHHH
Confidence            99999986 3 456778889999999874

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=99.92  E-value=7e-25  Score=186.94  Aligned_cols=136  Identities=18%  Similarity=0.203  Sum_probs=115.2

Q ss_pred             eeeeeEEEecCCC--CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC
Q 028493           21 IRCRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        21 ~~~ka~~~~~~~~--~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      .+|||+++++++.  .+++++++.|+|+++||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++  ++++
T Consensus         2 ~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~   79 (328)
T 1xa0_A            2 SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPR   79 (328)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSS
T ss_pred             CcceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCC
Confidence            3699999999874  38899999999999999999999999999999998865443467899999999999995  5789


Q ss_pred             CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (208)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip  178 (208)
                      |++||||+....                        ..|...+|                   +|+||+++|...++++|
T Consensus        80 ~~vGdrV~~~~~------------------------~~g~~~~G-------------------~~aey~~v~~~~~~~~P  116 (328)
T 1xa0_A           80 FREGDEVIATGY------------------------EIGVTHFG-------------------GYSEYARLHGEWLVPLP  116 (328)
T ss_dssp             CCTTCEEEEEST------------------------TBTTTBCC-------------------SSBSEEEECGGGCEECC
T ss_pred             CCCCCEEEEccc------------------------cCCCCCCc-------------------cceeEEEechHHeEECC
Confidence            999999986521                        02222234                   99999999999999999


Q ss_pred             CCCCccceeeccchhHHHhheee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++|+++++++.|||.++.
T Consensus       117 ~~l~~~~aa~~~~~~~ta~~~l~  139 (328)
T 1xa0_A          117 KGLTLKEAMAIGTAGFTAALSIH  139 (328)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHH
Confidence            99999999999999999997763

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.90  E-value=2.5e-24  Score=187.45  Aligned_cols=131  Identities=17%  Similarity=0.173  Sum_probs=114.1

Q ss_pred             ceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCC---------------------------
Q 028493           20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP---------------------------   72 (208)
Q Consensus        20 ~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~---------------------------   72 (208)
                      ..+||+++.......|++++++.|+|+++||||||++++||++|++.+.|.++                           
T Consensus         5 ~~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~   84 (379)
T 3iup_A            5 ALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSM   84 (379)
T ss_dssp             EEEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHH
T ss_pred             hhhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCcccccccc
Confidence            46799998865444599999999999999999999999999999999988531                           


Q ss_pred             -CCCCCCceeccceeEEEEEeCCCC-CCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCC
Q 028493           73 -PMAVFPRILGHEAVGVVESVGGGV-EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLK  150 (208)
Q Consensus        73 -~~~~~p~~~G~e~~G~Vv~vG~~v-~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~  150 (208)
                       ....+|.++|||++|+|+++|++| ++|++||+|+...                               +|        
T Consensus        85 ~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~-------------------------------~G--------  125 (379)
T 3iup_A           85 AGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG-------------------------------GA--------  125 (379)
T ss_dssp             GGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC-------------------------------SC--------
T ss_pred             ccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC-------------------------------CC--------
Confidence             013568999999999999999999 8999999998642                               13        


Q ss_pred             CceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493          151 GEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       151 ~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                                 +|+||+++|.+.++++|+++++++|+++++..+|||+++
T Consensus       126 -----------~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~  164 (379)
T 3iup_A          126 -----------MYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMV  164 (379)
T ss_dssp             -----------CSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHH
T ss_pred             -----------cceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHH
Confidence                       999999999999999999999999999999999999765

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.89  E-value=5.1e-23  Score=177.38  Aligned_cols=130  Identities=14%  Similarity=0.197  Sum_probs=108.9

Q ss_pred             ccceeeeeEEE-ecC---CC----CeEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcC----CCCCCCCCCceeccc
Q 028493           18 GKIIRCRAAIS-RIP---GK----PLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRS----TQPPMAVFPRILGHE   84 (208)
Q Consensus        18 ~~~~~~ka~~~-~~~---~~----~l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g----~~~~~~~~p~~~G~e   84 (208)
                      .+|++|||+++ +.+   +.    .|++++++.|+| +++||||||.+++||++|++.+.+    .+.....+|.++|||
T Consensus         4 ~~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E   83 (357)
T 2zb4_A            4 AAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGG   83 (357)
T ss_dssp             --CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEE
T ss_pred             cccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCcccccc
Confidence            45678999999 555   32    399999999999 999999999999999999988775    232223678999999


Q ss_pred             eeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCccccc
Q 028493           85 AVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFT  164 (208)
Q Consensus        85 ~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~  164 (208)
                      ++|+|++  ++|++|++||||++..                                |                   +|+
T Consensus        84 ~~G~V~~--~~v~~~~vGdrV~~~~--------------------------------G-------------------~~a  110 (357)
T 2zb4_A           84 GIGIIEE--SKHTNLTKGDFVTSFY--------------------------------W-------------------PWQ  110 (357)
T ss_dssp             EEEEEEE--ECSTTCCTTCEEEEEE--------------------------------E-------------------ESB
T ss_pred             EEEEEEe--cCCCCCCCCCEEEecC--------------------------------C-------------------CcE
Confidence            9999999  8899999999998641                                2                   899


Q ss_pred             ceEEEecCcEEEcCCCC-----CccceeeccchhHHHhheee
Q 028493          165 EYTVVDVTHVVKITPDI-----PLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       165 e~~~v~~~~v~~ip~~~-----~~~~aa~l~~~~~ta~~al~  201 (208)
                      ||++++...++++|+++     +++ +++++++++|||+++.
T Consensus       111 ey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~  151 (357)
T 2zb4_A          111 TKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQ  151 (357)
T ss_dssp             SEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHH
T ss_pred             EEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHH
Confidence            99999999999999998     444 6778889999999984

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.89  E-value=9.2e-23  Score=174.32  Aligned_cols=125  Identities=17%  Similarity=0.114  Sum_probs=106.7

Q ss_pred             eeeeeEEEecC------CCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccc----eeEEEE
Q 028493           21 IRCRAAISRIP------GKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHE----AVGVVE   90 (208)
Q Consensus        21 ~~~ka~~~~~~------~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e----~~G~Vv   90 (208)
                      ++|||++++..      ...|++++++.|+|+++||||||++++||++|.+++.+....  ..|.++|||    ++|+|+
T Consensus         6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~~--~~p~~~G~e~g~~~~G~V~   83 (336)
T 4b7c_A            6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARSY--IPPVGIGEVMRALGVGKVL   83 (336)
T ss_dssp             CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCCS--SCCCCTTSBCCCEEEEEEE
T ss_pred             ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhccccc--CCCCCCCcccCCceEEEEE
Confidence            57999999851      123999999999999999999999999999999988875433  456777777    899999


Q ss_pred             EeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEe
Q 028493           91 SVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD  170 (208)
Q Consensus        91 ~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~  170 (208)
                      +.  +|++|++||||+..                                 |                   +|+||+++|
T Consensus        84 ~~--~v~~~~vGdrV~~~---------------------------------G-------------------~~aey~~v~  109 (336)
T 4b7c_A           84 VS--KHPGFQAGDYVNGA---------------------------------L-------------------GVQDYFIGE  109 (336)
T ss_dssp             EE--CSTTCCTTCEEEEE---------------------------------C-------------------CSBSEEEEC
T ss_pred             ec--CCCCCCCCCEEecc---------------------------------C-------------------CceEEEEec
Confidence            94  58899999999852                                 3                   899999999


Q ss_pred             cCcEEEcCCCCCccce--eeccchhHHHhheee
Q 028493          171 VTHVVKITPDIPLDIA--CLLSCGVSTGNYRTL  201 (208)
Q Consensus       171 ~~~v~~ip~~~~~~~a--a~l~~~~~ta~~al~  201 (208)
                      .+.++++|+++++.++  ++++++++|||++|.
T Consensus       110 ~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~  142 (336)
T 4b7c_A          110 PKGFYKVDPSRAPLPRYLSALGMTGMTAYFALL  142 (336)
T ss_dssp             CTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHH
T ss_pred             hHHeEEcCCCCCchHHHhhhcccHHHHHHHHHH
Confidence            9999999999977776  678899999999984

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.86  E-value=6.5e-22  Score=166.84  Aligned_cols=119  Identities=20%  Similarity=0.241  Sum_probs=105.7

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||+++++++.+..+++++.|+|+++||+|||++++||++|++.+.|.++....+|.++|||++|+|+           |
T Consensus         1 Mka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------G   69 (302)
T 1iz0_A            1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------G   69 (302)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------T
T ss_pred             CeEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------C
Confidence            79999999987656779999999999999999999999999999999765434679999999999998           9


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~  182 (208)
                      |||+....                              +|                   +|+||+++|.+.++++|++++
T Consensus        70 drV~~~~~------------------------------~G-------------------~~aey~~v~~~~~~~iP~~~~  100 (302)
T 1iz0_A           70 RRYAALVP------------------------------QG-------------------GLAERVAVPKGALLPLPEGLS  100 (302)
T ss_dssp             EEEEEECS------------------------------SC-------------------CSBSEEEEEGGGCEECCTTCC
T ss_pred             cEEEEecC------------------------------Cc-------------------ceeeEEEEcHHHcEeCCCCCC
Confidence            99986421                              23                   999999999999999999999


Q ss_pred             ccceeeccchhHHHhheee
Q 028493          183 LDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       183 ~~~aa~l~~~~~ta~~al~  201 (208)
                      ++++|+++++++|||+++.
T Consensus       101 ~~~aa~l~~~~~ta~~~l~  119 (302)
T 1iz0_A          101 PEEAAAFPVSFLTAYLALK  119 (302)
T ss_dssp             HHHHHTSHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHH
Confidence            9999999999999999885

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.83  E-value=9.4e-21  Score=178.91  Aligned_cols=126  Identities=25%  Similarity=0.291  Sum_probs=108.7

Q ss_pred             eeEEEecCCCC--eEEEEeec--CCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493           24 RAAISRIPGKP--LVMEEIEV--DPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        24 ka~~~~~~~~~--l~~~~~~~--p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      ..+.+..++.+  |++++.+.  |+|+++||+|||+++|||++|++.+.|.++.    |.++|||++|+|+++|++|++|
T Consensus       211 ~~l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~~----~~~lG~E~aG~V~~vG~~V~~~  286 (795)
T 3slk_A          211 WRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPG----VASLGSEGAGVVVETGPGVTGL  286 (795)
T ss_dssp             CCEEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCSS----CCCSCCCEEEEEEEECSSCCSS
T ss_pred             EEEecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCCC----CccccceeEEEEEEeCCCCCcC
Confidence            34555666643  88887764  5689999999999999999999999987643    5679999999999999999999


Q ss_pred             CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (208)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~  179 (208)
                      ++||||+...                               .|                   +|+||++++...++++|+
T Consensus       287 ~vGDrV~~~~-------------------------------~G-------------------~~ae~~~v~~~~~~~iP~  316 (795)
T 3slk_A          287 APGDRVMGMI-------------------------------PK-------------------AFGPLAVADHRMVTRIPA  316 (795)
T ss_dssp             CTTCEEEECC-------------------------------SS-------------------CSSSEEEEETTSEEECCT
T ss_pred             CCCCEEEEEe-------------------------------cC-------------------CCcCEEEeehHHEEECCC
Confidence            9999997642                               13                   899999999999999999


Q ss_pred             CCCccceeeccchhHHHhheeeee
Q 028493          180 DIPLDIACLLSCGVSTGNYRTLVD  203 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al~~~  203 (208)
                      ++++++||+++++++|||++|+..
T Consensus       317 ~ls~~~AA~l~~~~~Ta~~al~~~  340 (795)
T 3slk_A          317 GWSFARAASVPIVFLTAYYALVDL  340 (795)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCCCC
T ss_pred             CCCHHHHHhhhHHHHHHHHHHHHH
Confidence            999999999999999999998643

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.82  E-value=5.4e-20  Score=156.91  Aligned_cols=123  Identities=17%  Similarity=0.203  Sum_probs=101.7

Q ss_pred             ceeeeeEEEecC--C----CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeC
Q 028493           20 IIRCRAAISRIP--G----KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVG   93 (208)
Q Consensus        20 ~~~~ka~~~~~~--~----~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG   93 (208)
                      +++||++++.+.  +    ..+++++++.|+|+++||||||.+++||+.|..+ ..  +  .++|.++|||.+|+|++. 
T Consensus         5 ~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~~--~--~~~p~~~g~e~~G~Vv~~-   78 (333)
T 1v3u_A            5 MVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-SK--R--LKEGAVMMGQQVARVVES-   78 (333)
T ss_dssp             CCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-TT--T--CCTTSBCCCCEEEEEEEE-
T ss_pred             cccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-cC--c--CCCCcccccceEEEEEec-
Confidence            467999999874  3    2399999999999999999999999999998742 21  1  356789999999999995 


Q ss_pred             CCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCc
Q 028493           94 GGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH  173 (208)
Q Consensus        94 ~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~  173 (208)
                       +|++|++||||+..                                 |                   +|+||++++.+.
T Consensus        79 -~v~~~~vGdrV~~~---------------------------------g-------------------~~aey~~v~~~~  105 (333)
T 1v3u_A           79 -KNSAFPAGSIVLAQ---------------------------------S-------------------GWTTHFISDGKG  105 (333)
T ss_dssp             -SCTTSCTTCEEEEC---------------------------------C-------------------CSBSEEEESSTT
T ss_pred             -CCCCCCCCCEEEec---------------------------------C-------------------ceEEEEEechHH
Confidence             67899999999752                                 3                   899999999999


Q ss_pred             EEEcCCC----CCccc-eeeccchhHHHhheee
Q 028493          174 VVKITPD----IPLDI-ACLLSCGVSTGNYRTL  201 (208)
Q Consensus       174 v~~ip~~----~~~~~-aa~l~~~~~ta~~al~  201 (208)
                      ++++|++    +++++ +++++++++|||+++.
T Consensus       106 ~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~  138 (333)
T 1v3u_A          106 LEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLL  138 (333)
T ss_dssp             EEECC--CCTTSCGGGGGTTTSHHHHHHHHHHH
T ss_pred             eEEcCcccccCCCHHHHHHHhCChHHHHHHHHH
Confidence            9999997    88887 4788899999999984

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.77  E-value=3.7e-19  Score=152.31  Aligned_cols=128  Identities=19%  Similarity=0.175  Sum_probs=98.6

Q ss_pred             ceeeeeEEEec-----CCC-CeEEE--EeecCC-CCCCeEEEEEEeeeCChhhhhhhcCCCCCC---CCCCceeccceeE
Q 028493           20 IIRCRAAISRI-----PGK-PLVME--EIEVDP-PKAGEVRIKILCTSLCHSDVTFWRSTQPPM---AVFPRILGHEAVG   87 (208)
Q Consensus        20 ~~~~ka~~~~~-----~~~-~l~~~--~~~~p~-~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~---~~~p~~~G~e~~G   87 (208)
                      |++||+++...     ++. .|+++  +++.|. |+++||||||.++++|+.|. .+.|.+...   ..+|.++|||++|
T Consensus         2 ~~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G   80 (345)
T 2j3h_A            2 TATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQG   80 (345)
T ss_dssp             EEEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEE
T ss_pred             CccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeec
Confidence            45566666654     442 38888  888886 89999999999999888874 444543210   2468899999999


Q ss_pred             EEEE--eCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccc
Q 028493           88 VVES--VGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTE  165 (208)
Q Consensus        88 ~Vv~--vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e  165 (208)
                      ++++  +|++|++|++||||+..                                 |                   +|+|
T Consensus        81 ~~~~GvV~~~v~~~~vGdrV~~~---------------------------------g-------------------~~ae  108 (345)
T 2j3h_A           81 YGVSRIIESGHPDYKKGDLLWGI---------------------------------V-------------------AWEE  108 (345)
T ss_dssp             EEEEEEEEECSTTCCTTCEEEEE---------------------------------E-------------------ESBS
T ss_pred             ceEEEEEecCCCCCCCCCEEEee---------------------------------c-------------------Ccee
Confidence            9999  99999999999999752                                 2                   8999


Q ss_pred             eEEEecCc--EEEcCC-C--CCccceeeccchhHHHhheee
Q 028493          166 YTVVDVTH--VVKITP-D--IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       166 ~~~v~~~~--v~~ip~-~--~~~~~aa~l~~~~~ta~~al~  201 (208)
                      |++++...  ++++|+ .  ++++ +|+++++++|||+++.
T Consensus       109 y~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~  148 (345)
T 2j3h_A          109 YSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFY  148 (345)
T ss_dssp             EEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHH
T ss_pred             EEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHH
Confidence            99999876  999996 3  4544 6778889999999984

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.08  E-value=3.7e-11  Score=124.60  Aligned_cols=109  Identities=16%  Similarity=0.107  Sum_probs=88.5

Q ss_pred             eEEEEeecCC-CC--CCeEEEEEEeeeCChhhhhhhcCCCCCC------CCCCceeccceeEEEEEeCCCCCCCCCCCEE
Q 028493           35 LVMEEIEVDP-PK--AGEVRIKILCTSLCHSDVTFWRSTQPPM------AVFPRILGHEAVGVVESVGGGVEEVREGDLV  105 (208)
Q Consensus        35 l~~~~~~~p~-~~--~~eVlVkV~a~~l~~sD~~~~~g~~~~~------~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V  105 (208)
                      +.+.+.+... +.  ++||+|||.++++|+.|++...|.++..      ...|.++|+|++|+|          ++||+|
T Consensus      1544 l~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V----------~vGdrV 1613 (2512)
T 2vz8_A         1544 IRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRD----------ASGRRV 1613 (2512)
T ss_dssp             EEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEE----------TTSCCE
T ss_pred             eEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEE----------ccCCEE
Confidence            6666555433 22  7899999999999999999999876431      124578999999987          379999


Q ss_pred             eeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccc
Q 028493          106 LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDI  185 (208)
Q Consensus       106 ~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~  185 (208)
                      ++...                              .|                   +|+||+++|...++++|+++++++
T Consensus      1614 ~g~~~------------------------------~G-------------------~~Aeyv~vp~~~v~~iPd~ls~~e 1644 (2512)
T 2vz8_A         1614 MGMVP------------------------------AE-------------------GLATSVLLLQHATWEVPSTWTLEE 1644 (2512)
T ss_dssp             EEECS------------------------------SC-------------------CSBSEEECCGGGEEECCTTSCHHH
T ss_pred             EEeec------------------------------CC-------------------ceeeEEEcccceEEEeCCCCCHHH
Confidence            76421                              13                   899999999999999999999999


Q ss_pred             eeeccchhHHHhheeee
Q 028493          186 ACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       186 aa~l~~~~~ta~~al~~  202 (208)
                      ||+++++++|||+++..
T Consensus      1645 AA~lp~~~~TA~~al~~ 1661 (2512)
T 2vz8_A         1645 AASVPIVYTTAYYSLVV 1661 (2512)
T ss_dssp             HTTSHHHHHHHHHHHTT
T ss_pred             HHHhHHHHHHHHHHHHH
Confidence            99999999999998853

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=92.34  E-value=0.033  Score=43.99  Aligned_cols=33  Identities=18%  Similarity=0.130  Sum_probs=28.3

Q ss_pred             CCCCCCEEeeec-------cCCCCCCccccCCCCCCCCCC
Q 028493           98 EVREGDLVLPVF-------QGDCGECRDCKSPKSNICSKF  130 (208)
Q Consensus        98 ~~~vGd~V~~~~-------~~~c~~c~~~~~g~~~~c~~~  130 (208)
                      .+++||+|++..       ...|+.|..|+.|..++|...
T Consensus         3 ~~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~   42 (248)
T 2yvl_A            3 SFKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVI   42 (248)
T ss_dssp             CCCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTT
T ss_pred             cCCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhc
Confidence            389999999987       678899999999998888754

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0

Probab=87.78  E-value=0.57  Score=32.23  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=18.9

Q ss_pred             eeEEEEEeCCCCC---------CCCCCCEEee
Q 028493           85 AVGVVESVGGGVE---------EVREGDLVLP  107 (208)
Q Consensus        85 ~~G~Vv~vG~~v~---------~~~vGd~V~~  107 (208)
                      ..|+|+++|++..         .+++||+|+.
T Consensus        36 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl~   67 (95)
T 3nx6_A           36 TKGEVVAIGAGKPLDNGSLHAPVVKVGDKVIY   67 (95)
T ss_dssp             EEEEEEEECSCEECTTSCEECCSCCTTCEEEE
T ss_pred             cccEEEEECCCeECCCCCEEccccCCCCEEEE
Confidence            4799999999743         4899999974

>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A

Probab=82.16  E-value=0.92  Score=31.50  Aligned_cols=23  Identities=48%  Similarity=0.655  Sum_probs=18.5

Q ss_pred             eeEEEEEeCCCCC---------CCCCCCEEee
Q 028493           85 AVGVVESVGGGVE---------EVREGDLVLP  107 (208)
Q Consensus        85 ~~G~Vv~vG~~v~---------~~~vGd~V~~  107 (208)
                      ..|+|++||++..         .+++||+|+.
T Consensus        41 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vlf   72 (100)
T 1we3_O           41 QKGKVIAVGTGRVLENGQRVPLEVKEGDIVVF   72 (100)
T ss_dssp             SEEEESCCCCCEECTTSCEECCSCCTTCEEEE
T ss_pred             cCCEEEEECCCcCCCCCCEEeeecCCCCEEEE
Confidence            4799999998742         3899999974

>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A

Probab=80.79  E-value=1.9  Score=29.77  Aligned_cols=24  Identities=42%  Similarity=0.515  Sum_probs=18.9

Q ss_pred             eeEEEEEeCCCCC----------CCCCCCEEeee
Q 028493           85 AVGVVESVGGGVE----------EVREGDLVLPV  108 (208)
Q Consensus        85 ~~G~Vv~vG~~v~----------~~~vGd~V~~~  108 (208)
                      ..|+|++||++..          .+++||+|+..
T Consensus        38 ~~G~VvAVG~G~~~~~G~~~~p~~VkvGD~Vlf~   71 (99)
T 1p3h_A           38 QEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYS   71 (99)
T ss_dssp             EEEEEEEECCCEECSSSSCEECCSCCTTCEEEEE
T ss_pred             ceEEEEEECCCcCcCCCCEEEccccCCCCEEEEC
Confidence            5799999998631          38999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	208
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	8e-38
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	2e-36
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	3e-36
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	6e-36
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	7e-34
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	3e-24
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	1e-22
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	5e-20
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	4e-17
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	6e-17
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	4e-16
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	9e-16
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	3e-13
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	1e-11
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	7e-11
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	2e-09
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	2e-08
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	1e-07
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	1e-06
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	3e-06
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	8e-05
d1o89a1	146	b.35.1.2 (A:1-115,A:293-323) Hypothetical protein	2e-04
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	0.001

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score =  128 bits (321), Expect = 8e-38
 Identities = 75/182 (41%), Positives = 108/182 (59%), Gaps = 2/182 (1%)

Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           +T GK+I+C+AA++    KPLV+EEIEVD P A E+RIKI+ T +CH+D+      +   
Sbjct: 1   ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD 60

Query: 75  AVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
             FP +LGHE  G+VESVG GV E + G+ V+P+F   CGECR C+SPK+N C K    +
Sbjct: 61  -GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANE 119

Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194
           +  +      RF     +V+   L  S+F++YTVV+   V KI P + LD        + 
Sbjct: 120 SPDVMSPKETRFTCKGRKVLQF-LGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLE 178

Query: 195 TG 196
           + 
Sbjct: 179 SV 180

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  124 bits (311), Expect = 2e-36
 Identities = 73/184 (39%), Positives = 108/184 (58%), Gaps = 7/184 (3%)

Query: 16  TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           T GK+I+C+AAI+   G PL +EEIEV PPKA EVRI+++ T +C +D+          A
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATD--PKKKA 59

Query: 76  VFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKF----V 131
           +FP +LGHE  G+VESVG GV   + GD V+P F   C  C+ C SP +N+C K      
Sbjct: 60  LFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKY 119

Query: 132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSC 191
              +Q +  D T+RF   KG  I++ + VSSF++YTVV   ++ ++  +  LD+    + 
Sbjct: 120 PTIDQELMEDRTSRF-TCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHAL 178

Query: 192 GVST 195
              +
Sbjct: 179 PFES 182

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  123 bits (310), Expect = 3e-36
 Identities = 76/179 (42%), Positives = 108/179 (60%), Gaps = 2/179 (1%)

Query: 17  AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
           A ++I+C+AA++   GKPL +EEIEV PPKA EVRIKI+ T++CH+D         P   
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGAD-PEGC 59

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
           FP ILGH   G+VESVG GV +++ GD V+P++   CGEC+ C +PK+N+C K      +
Sbjct: 60  FPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 119

Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
            +  DGT+RF      ++H  +  S+F+EYTVV    V KI P I +D     +     
Sbjct: 120 GLMPDGTSRFTCKGKTILH-YMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDE 177

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  123 bits (308), Expect = 6e-36
 Identities = 84/180 (46%), Positives = 107/180 (59%), Gaps = 3/180 (1%)

Query: 16  TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA 75
           TAGK I C+AA++  P KPL +E I V PPKA EVRIKIL + +C SD +  +   P   
Sbjct: 2   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSK- 60

Query: 76  VFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDN 135
            FP ILGHEAVGVVES+G GV  V+ GD V+P+F   CG CR CKS  SN C K      
Sbjct: 61  -FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAK 119

Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
             +  D T+RF   +G+ I+N++  S+FTEYTVV    V KI P I ++        +  
Sbjct: 120 TGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTLDQ 178

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  117 bits (294), Expect = 7e-34
 Identities = 75/190 (39%), Positives = 99/190 (52%), Gaps = 5/190 (2%)

Query: 15  STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
           STAGK+I+C+AA+     KP  +EE+EV PPKA EVRIK++ T +C SD      T    
Sbjct: 1   STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP 60

Query: 75  AVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD 134
                   HEA G+VES+G GV  VR GD V+P+F   CG+CR CK P+ N C K  +  
Sbjct: 61  LPVIAG--HEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKN-DLS 117

Query: 135 NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLD--IACLLSCG 192
                          +G+ IH+ L  S+F++YTVVD   V KI     LD  I  +L   
Sbjct: 118 MPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALDPLITHVLPFE 177

Query: 193 VSTGNYRTLV 202
                +  L 
Sbjct: 178 KINEGFDLLR 187

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 92.7 bits (229), Expect = 3e-24
 Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 4/174 (2%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
            AA++   G    ++ +++  P+  EV +K++ T +CH+D+       P     P +LGH
Sbjct: 5   IAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP--LPAVLGH 62

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           E  G++E++G  V E++ GD V+ +  G CG+C  C +     CS+F  ++      +G 
Sbjct: 63  EGSGIIEAIGPNVTELQVGDHVV-LSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGN 121

Query: 144 NRF-RDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
           +      +G V  +    SSF  Y +    + VK+T D P D            
Sbjct: 122 HALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEIN 175

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 87.7 bits (216), Expect = 1e-22
 Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 23/174 (13%)

Query: 23  CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILG 82
            +AA+    G PL +EE++V  P  G+V +KI  + +CH+D+       P     P I G
Sbjct: 6   MKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPG 65

Query: 83  HEAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           HE VG V +VG GV  V+EGD V +P     CG C  C +    +C    N         
Sbjct: 66  HEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGG- 124

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVST 195
                                + EY + D  +V  +  ++   I       ++ 
Sbjct: 125 ---------------------YAEYVLADPNYVGILPKNVKATIHPGKLDDINQ 157

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 81.1 bits (199), Expect = 5e-20
 Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 22/187 (11%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +A  +    +PL   +I    P   +V+I+I    +CHSD+   RS      V+P + GH
Sbjct: 2   KAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGT-VYPCVPGH 60

Query: 84  EAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           E VG V +VG  VE+   GDLV +      C  C +C+    N C       N   P + 
Sbjct: 61  EIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEP 120

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP-DIPLDIACLLSCGVSTG----- 196
            +                  +++  VV   +V++I   DI +  A  ++           
Sbjct: 121 GHTL--------------GGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRGDV 166

Query: 197 NYRTLVD 203
            YR ++D
Sbjct: 167 KYRFVID 173

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.7 bits (180), Expect = 4e-17
 Identities = 36/170 (21%), Positives = 60/170 (35%), Gaps = 20/170 (11%)

Query: 31  PGKPLVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
                  ++ + DP      ++ IKI    +C SD+         M   P ++GHE VG 
Sbjct: 15  HEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMK-MPLVVGHEIVGK 73

Query: 89  VESVGGGVEE-VREGD-LVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRF 146
           V  +G      ++ G  + +      C EC  CK+     C+KFV   +Q       ++ 
Sbjct: 74  VVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQG 133

Query: 147 RDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
                           +  Y  V    VV I  +I ++   +   GV   
Sbjct: 134 ---------------GYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEA 168

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 73.1 bits (178), Expect = 6e-17
 Identities = 43/181 (23%), Positives = 66/181 (36%), Gaps = 30/181 (16%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV------- 76
           RA      GKPL ++EI V  PK  +V IK+    +CHSDV   +     + +       
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
            P  LGHE  G +E VG  V    +GDLV        G C  C+  + ++C    +    
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCD---SPRWL 118

Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI-PLDIACLLSCGVST 195
            +  DG                    + EY +V     +     + P+    +     + 
Sbjct: 119 GINFDGA-------------------YAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANE 159

Query: 196 G 196
            
Sbjct: 160 A 160

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 71.0 bits (173), Expect = 4e-16
 Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 22/181 (12%)

Query: 21  IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           ++  A +     +PLV +E E+     G + ++IL   +C SDV  +R  + P    P I
Sbjct: 3   LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFR-GEDPRVPLPII 61

Query: 81  LGHEAVGVVESVGGGVEEVREGD-----LVLPVFQGDCGECRDCKSPKSNICSKFVNKDN 135
           LGHE  G V  V G   ++         L++      CGEC  CK  K        N+  
Sbjct: 62  LGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCP--NRKV 119

Query: 136 QSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD-VTHVVKITPDIPLDIACLLSCGVS 194
             + R G + +  L+G           ++ + V+D  T V+K++  I   +   L     
Sbjct: 120 YGINR-GCSEYPHLRG----------CYSSHIVLDPETDVLKVSEKITHRLP--LKEANK 166

Query: 195 T 195
            
Sbjct: 167 A 167

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 69.6 bits (169), Expect = 9e-16
 Identities = 45/171 (26%), Positives = 68/171 (39%), Gaps = 23/171 (13%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +AA+     +PL ++E+E      GEV ++I    +CH+D+       P     P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 84  EAVGVVESVGGGVEEVREGDLV-LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           E VG+VE VG GV  ++ GD V +P     CG C  C S +  +C    N          
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVD---- 117

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGV 193
                               + EY      +VVKI  +  +++  L     
Sbjct: 118 ------------------GGYAEYCRAAADYVVKIPDNTIIEVQPLEKINE 150

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 3e-13
 Identities = 30/180 (16%), Positives = 56/180 (31%), Gaps = 24/180 (13%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSD--VTFWRSTQPPMAVFPRIL 81
            + +   PG  L +E   +  P   EV +++    +C SD     +      +   P +L
Sbjct: 9   LSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVL 67

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           GHEA G VE VG  V+ ++ GD V             CK  + N+               
Sbjct: 68  GHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF--------- 118

Query: 142 GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTL 201
                            +  +   +   +     K+  ++   +        +   + T 
Sbjct: 119 ------------CATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFPLEKALEAFETF 166

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 58.5 bits (140), Expect = 1e-11
 Identities = 35/176 (19%), Positives = 65/176 (36%), Gaps = 25/176 (14%)

Query: 24  RAAISRIPGKPLVMEEIEV-DPPKAGEVRIKILCTSLCHSDVTFWR--STQPPMAVFPRI 80
           +AA      KPL +E+++        +V ++I    +CH+D+   +    +      P  
Sbjct: 1   KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 60

Query: 81  LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR 140
           LGHE VG +E V  GVE + +GD V+       G C  C++ +   C             
Sbjct: 61  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENL---------- 110

Query: 141 DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
                           +     F E+       V+K+  D+ +++       ++  
Sbjct: 111 ------------EFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDV 154

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 56.5 bits (135), Expect = 7e-11
 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 24/174 (13%)

Query: 25  AAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM--AVFPRILG 82
           +A+       L +E+  +  PK  EV +++    +C SDV ++   +        P ++G
Sbjct: 4   SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 62

Query: 83  HEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDG 142
           HEA G V  VG  V+ +++GD V       C  C+ CK  K N+C               
Sbjct: 63  HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDD--- 119

Query: 143 TNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTG 196
                              +   Y V       K+  +  +      S  +   
Sbjct: 120 ------------------GNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQT 155

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 52.3 bits (124), Expect = 2e-09
 Identities = 34/181 (18%), Positives = 56/181 (30%), Gaps = 23/181 (12%)

Query: 24  RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
           +        K L   E E     + +  ++ L  S C SD+               ILGH
Sbjct: 2   KGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDR-KNMILGH 59

Query: 84  EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT 143
           EAVG V  VG  V++ + GD V+           + ++      +  +     S  +DG 
Sbjct: 60  EAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGV 119

Query: 144 NRFRDLKGEVIHNVLNVSSFTEYTVVDV--THVVKITPDIPLDIACLLSCGVSTGNYRTL 201
                              F EY  V+    ++  +  D+ L                 L
Sbjct: 120 -------------------FGEYFHVNDADMNLAILPKDVDLSKLVTHVYHGFDHIEEAL 160

Query: 202 V 202
           +
Sbjct: 161 L 161

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 2e-08
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 3/116 (2%)

Query: 24  RAAISRIPGKPLVME---EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRI 80
           RA      G P V++   +I V  PK  +V IK+    +   +      T     + P  
Sbjct: 4   RAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYT 63

Query: 81  LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
            G +  GV+E+VG      ++GD V        G      +    +          
Sbjct: 64  PGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLKPV 119

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 46.7 bits (110), Expect = 1e-07
 Identities = 16/65 (24%), Positives = 27/65 (41%)

Query: 24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH 83
          +A + +  G PL + ++     + GEV +++    L  +D              P I G 
Sbjct: 2  KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGM 61

Query: 84 EAVGV 88
          E VGV
Sbjct: 62 EVVGV 66

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 38/182 (20%), Positives = 62/182 (34%), Gaps = 24/182 (13%)

Query: 24  RAAISRIPGKPLVMEEIEV-------DPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAV 76
           R  +    GK + +++I+               V +K++ T++C SD    R        
Sbjct: 3   RGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVG 61

Query: 77  FPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ 136
                 HE  G V   G  VE ++ GDLV   F   CG CR CK   + +C         
Sbjct: 62  LVLG--HEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVC------LTV 113

Query: 137 SMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV--THVVKITPDIPLDIACLLSCGVS 194
           +  R G        G+            EY +V     +++K+           ++  V 
Sbjct: 114 NPARAGGAYGYVDMGDWTG------GQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVG 167

Query: 195 TG 196
             
Sbjct: 168 VQ 169

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 4/120 (3%)

Query: 24  RAAISRIPGKPLVME--EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A +              I +D    G+V +++  +S+ + D          +  +P + 
Sbjct: 5   QAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVP 64

Query: 82  GHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD 141
           G +       V       REGD V+              S  + +  +++    + + R 
Sbjct: 65  GID--LAGVVVSSQHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLERI 122

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 39.4 bits (90), Expect = 8e-05
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 20 IIRCRAAISRIPGKP---LVMEEIEVDPP--KAGEVRIKILCTSLCHSDVTFWRSTQPPM 74
          +I  +A +    G+P   L  +  E+D       EV +K L + +  SD+   +   P  
Sbjct: 1  MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60

Query: 75 AVFPRILGH 83
                 G 
Sbjct: 61 PAKTTGFGT 69

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 146

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 2/83 (2%)

Query: 24  RAAISRIPGKPLVM--EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRIL 81
           +A +        +   + ++      G+V + +  +SL + D          +  FP I 
Sbjct: 2   QALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIP 61

Query: 82  GHEAVGVVESVGGGVEEVREGDL 104
           G +  G V +         +  L
Sbjct: 62  GIDFAGTVRTSEDPRFHAGQEVL 84

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 31 PGKPLVME--EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGV 88
           G P V++  E     P   E++++     +   D        PP ++   +    A  V
Sbjct: 9  HGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIV 68

Query: 89 VE 90
           +
Sbjct: 69 SK 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	208
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	100.0
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	100.0
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	100.0
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	100.0
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	100.0
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	100.0
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	100.0
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	100.0
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	100.0
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	100.0
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	100.0
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	100.0
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	100.0
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	100.0
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	100.0
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.98
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.96
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.95
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.94
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.94
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.94
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.93
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.87
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.63
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.6
d1aono_	97	Chaperonin-10 (GroES) {Escherichia coli [TaxId: 56	87.21
d1p3ha_	99	Chaperonin-10 (GroES) {Mycobacterium tuberculosis	82.69

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=100.00  E-value=3.9e-39  Score=256.67  Aligned_cols=184  Identities=42%  Similarity=0.702  Sum_probs=164.8

Q ss_pred             ccccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCC
Q 028493           16 TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (208)
Q Consensus        16 ~~~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~   95 (208)
                      |..+++++||+++++++++|+++|++.|+|+++||||||.++|||++|+|.+.|.... ..+|.++|||++|+|+++|++
T Consensus         2 ~~~~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~-~~~p~i~GhE~~G~v~~vG~~   80 (199)
T d1cdoa1           2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPG   80 (199)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTT
T ss_pred             CCCCceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccc-cccccccccccceEEEEEcCC
Confidence            4457788999999999989999999999999999999999999999999999986554 478999999999999999999


Q ss_pred             CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEE
Q 028493           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (208)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~  175 (208)
                      +++|++||||++.+...|+.|++|+.|++++|.........+....|..++. ..+....++.+.|+|+||++++...++
T Consensus        81 v~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~Ggfaey~~v~~~~~~  159 (199)
T d1cdoa1          81 VTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVA  159 (199)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEE-ETTEEEEEGGGTCCSBSEEEEEGGGEE
T ss_pred             CceecCCCEEEEeeeccccccccccCCCcccccccccccccccccCccccee-eccceeecccccCCceEEEEEchHHEE
Confidence            9999999999999999999999999999999998776644555555655544 567778888878899999999999999


Q ss_pred             EcCCCCCccceeeccchhHHHhheee
Q 028493          176 KITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       176 ~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++|+++++++++++.+++.|++.++.
T Consensus       160 ~iP~~~~~~~aa~l~~~l~t~~~av~  185 (199)
T d1cdoa1         160 KIDPSVKLDEFITHRMPLESVNDAID  185 (199)
T ss_dssp             ECCTTSCCGGGEEEEEEGGGHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999874

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=100.00  E-value=2.9e-38  Score=251.97  Aligned_cols=182  Identities=40%  Similarity=0.714  Sum_probs=158.0

Q ss_pred             ccccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCC
Q 028493           16 TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (208)
Q Consensus        16 ~~~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~   95 (208)
                      |..++++|||+++++++++|+++|++.|+|+++||||||.++|||++|+|.++|.++.  .+|.++|||++|+|+++|++
T Consensus         2 ~~~~~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~--~~P~v~GHE~~G~V~~vG~~   79 (202)
T d1e3ia1           2 TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA--LFPVVLGHECAGIVESVGPG   79 (202)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSCC--CSSBCCCCEEEEEEEEECTT
T ss_pred             CCCCeEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeeccc--ccccccccccceEEeeecCC
Confidence            4568899999999999989999999999999999999999999999999999998765  78999999999999999999


Q ss_pred             CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCC---CC-CCCCCcccccCCCceeeeccCcccccceEEEec
Q 028493           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQ---SM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV  171 (208)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~---g~-~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~  171 (208)
                      |+++++||||+..+...|+.|++|+.|++++|.+.+.....   +. ...+..++. ..|...+++.+.|+|+||+++++
T Consensus        80 V~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~~~G~faey~~v~~  158 (202)
T d1e3ia1          80 VTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSE  158 (202)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEG
T ss_pred             ceeccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccc-cCceeeecccccCCceEEEEEeh
Confidence            99999999999999999999999999999999987764111   11 122223333 56777777778889999999999


Q ss_pred             CcEEEcCCCCCccceeeccchhHHHhhee
Q 028493          172 THVVKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       172 ~~v~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ..++++|++++++.++.+.+++.+.+.++
T Consensus       159 ~~l~~lP~~~~~~~~~~~~~~~~~~~~a~  187 (202)
T d1e3ia1         159 ANLARVDDEFDLDLLVTHALPFESINDAI  187 (202)
T ss_dssp             GGEEECCTTSCGGGGEEEEEEGGGHHHHH
T ss_pred             hhEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888888887765

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=246.57  Aligned_cols=179  Identities=44%  Similarity=0.759  Sum_probs=157.5

Q ss_pred             ceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493           20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        20 ~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      .++|||+++++++++|+++|+|+|+|+++||||||+++|||++|+|.++|.+.. ..+|.++|||++|+|+++|++|+++
T Consensus         4 ~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~-~~~p~v~GhE~~G~V~~vG~~V~~~   82 (197)
T d2fzwa1           4 VIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGHLGAGIVESVGEGVTKL   82 (197)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTT-CCSSBCCCCEEEEEEEEECTTCCSC
T ss_pred             ceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCccc-ccccccCCcceeeEEEeecCCceec
Confidence            367999999999999999999999999999999999999999999999997655 5789999999999999999999999


Q ss_pred             CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (208)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~  179 (208)
                      ++||+|++.....|+.|+.|+.|.++.|.+.+.....+...+.+.++. ..|..+.++.+.|+|+||+++++.+++++|+
T Consensus        83 ~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~g~GgfAey~vvp~~~~~~vp~  161 (197)
T d2fzwa1          83 KAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDP  161 (197)
T ss_dssp             CTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEEECCT
T ss_pred             CCCCEEEEccccccccccccccCccccCccccccccccccCCccceec-cCCcceecccccccceeEEEechHHEEECCC
Confidence            999999999999999999999999999998665433444444433333 4556666777778999999999999999999


Q ss_pred             CCCccceeeccchhHHHhhee
Q 028493          180 DIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++++.+.+++.|++.++
T Consensus       162 ~l~~~~aa~~~~~~~t~~~a~  182 (197)
T d2fzwa1         162 LIKVDEFVTHNLSFDEINKAF  182 (197)
T ss_dssp             TSCSGGGEEEEEEGGGHHHHH
T ss_pred             CCCHHHHhhhhhHHHHHHHHH
Confidence            999999999999999888875

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=100.00  E-value=1.2e-36  Score=242.16  Aligned_cols=175  Identities=48%  Similarity=0.774  Sum_probs=152.2

Q ss_pred             ccccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCC
Q 028493           16 TAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (208)
Q Consensus        16 ~~~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~   95 (208)
                      |+.++.+|||+++++++++|+++|++.|+|+++||||||.+++||++|+|+++|.++.  .+|.++|||++|+|+++|++
T Consensus         2 ~~~~~~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~~--~~P~i~GHE~~G~Vv~~G~~   79 (198)
T d1p0fa1           2 TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS--KFPVILGHEAVGVVESIGAG   79 (198)
T ss_dssp             CTTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSBCCCCCEEEEEEEECTT
T ss_pred             CCCCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeecccc--ccccccceeeeeeeeecCcc
Confidence            4567889999999999988999999999999999999999999999999999998766  78999999999999999999


Q ss_pred             CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEE
Q 028493           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (208)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~  175 (208)
                      ++++++||||+..+...|+.|++|+.|++++|.........|....++.++. ..+..++++.+.|+|+||+++++..++
T Consensus        80 v~~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~g~faey~~v~~~~~~  158 (198)
T d1p0fa1          80 VTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVA  158 (198)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEETTSEE
T ss_pred             cccCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEe-eCCeeccccCCCccceeeEEecHHHEE
Confidence            9999999999999999999999999999999998876543444444444444 566677777778899999999999999


Q ss_pred             EcCCCCCccceeeccchh
Q 028493          176 KITPDIPLDIACLLSCGV  193 (208)
Q Consensus       176 ~ip~~~~~~~aa~l~~~~  193 (208)
                      ++|+.++++.++...+..
T Consensus       159 kip~~~~~~~~~~~~~~~  176 (198)
T d1p0fa1         159 KIDPKINVNFLVSTKLTL  176 (198)
T ss_dssp             EECTTSCGGGGEEEEECG
T ss_pred             ECCCCCCHHHHHHhhcch
Confidence            999999987765544443

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=1.4e-36  Score=240.95  Aligned_cols=177  Identities=26%  Similarity=0.528  Sum_probs=146.7

Q ss_pred             eeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        21 ~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      ++|+|+++.+.+.+|++++++.|+|+++||||||.+++||++|++.++|.++.  ++|.++|||++|+|+++|++|++|+
T Consensus         2 k~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~--~~P~i~GHE~~G~V~~vG~~v~~~~   79 (194)
T d1f8fa1           2 KDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV--PLPAVLGHEGSGIIEAIGPNVTELQ   79 (194)
T ss_dssp             EEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             ceeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcccc--cCCcccccceEEEeeecCccceeEc
Confidence            57899999999999999999999999999999999999999999999998765  7899999999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcc-cccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNR-FRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~-~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~  179 (208)
                      +||||+..+ .+|++|.+|++|++++|++.......|...+|..+ ..+..+....++.+.|+|+||.+++..+++++|+
T Consensus        80 vGDrVv~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~  158 (194)
T d1f8fa1          80 VGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTK  158 (194)
T ss_dssp             TTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECT
T ss_pred             cCceeeeec-ccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEECCC
Confidence            999996665 48999999999999999986544345555555432 3333344455666678999999999999999999


Q ss_pred             CCCccceeeccchhHHHhhee
Q 028493          180 DIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       180 ~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++++++..+..+++.|+
T Consensus       159 ~i~~~~~~~i~g~g~~g~~ai  179 (194)
T d1f8fa1         159 DFPFDQLVKFYAFDEINQAAI  179 (194)
T ss_dssp             TCCGGGGEEEEEGGGHHHHHH
T ss_pred             CCCcccEEEEeCcHHHHHHHH
Confidence            999999887766656655554

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2.1e-36  Score=235.93  Aligned_cols=161  Identities=29%  Similarity=0.437  Sum_probs=147.4

Q ss_pred             cceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC
Q 028493           19 KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      +|++|||+++++++++|+++|++.|.|+++||||||.+++||++|++.++|.++....+|.++|||++|+|+++|++|++
T Consensus         2 ~P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~~   81 (175)
T d1llua1           2 LPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVTR   81 (175)
T ss_dssp             CCSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCS
T ss_pred             cchhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCccc
Confidence            68999999999999889999999999999999999999999999999999988765678999999999999999999999


Q ss_pred             CCCCCEEeeecc-CCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           99 VREGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        99 ~~vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      |++||||+..+. ..|+.|..|+.|.+++|.....   .|...+|                   +|+||++++.++++++
T Consensus        82 ~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~---~G~~~~g-------------------g~aey~~v~~~~~~~i  139 (175)
T d1llua1          82 VKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN---TGYSVNG-------------------GYAEYVLADPNYVGIL  139 (175)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEECTTTSEEC
T ss_pred             cccCCEEEeccccccCCccccccCCcccccccccc---ccccccc-------------------ccceEEEechHHEEEC
Confidence            999999987654 5799999999999999998775   5555666                   9999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhheee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      |++++++.++++..++.|+++++.
T Consensus       140 Pd~l~~~~a~~~~~~~~t~~~~~~  163 (175)
T d1llua1         140 PKNVKATIHPGKLDDINQILDQMR  163 (175)
T ss_dssp             CTTCCCCEEEECGGGHHHHHHHHH
T ss_pred             CCCCChhHHHHHHhHHHHHHHHHH
Confidence            999999988888888899988764

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=5.2e-36  Score=238.19  Aligned_cols=171  Identities=47%  Similarity=0.770  Sum_probs=150.3

Q ss_pred             cccccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCC
Q 028493           15 STAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG   94 (208)
Q Consensus        15 ~~~~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~   94 (208)
                      ||..+.++|||++++.++++|+++|++.|+|+++||||||.++|||++|+|.++|.++.  ++|.++|||++|+|+++|+
T Consensus         1 ~~~~~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~--~~P~i~GHE~~G~Vv~vG~   78 (198)
T d2jhfa1           1 STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT--PLPVIAGHEAAGIVESIGE   78 (198)
T ss_dssp             CCTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--CSSBCCCCSEEEEEEEECT
T ss_pred             CCCCCceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCccc--ccceecccceeEEEEecCc
Confidence            35567889999999999989999999999999999999999999999999999998876  7899999999999999999


Q ss_pred             CCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcE
Q 028493           95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (208)
Q Consensus        95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v  174 (208)
                      +++++++||||+..+...|+.|+.|+.+.+++|.........+....+..++. ..+...+++.+.|+|+||+++|..++
T Consensus        79 ~v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~G~fAEy~~v~~~~~  157 (198)
T d2jhfa1          79 GVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISV  157 (198)
T ss_dssp             TCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEEGGGE
T ss_pred             cccCcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCcccccc-ccCceeccCCCCCcccCeEEeCHHHe
Confidence            99999999999999999999999999999999999887644444444433333 55666777777889999999999999


Q ss_pred             EEcCCCCCccceee
Q 028493          175 VKITPDIPLDIACL  188 (208)
Q Consensus       175 ~~ip~~~~~~~aa~  188 (208)
                      +++|+.++++.++.
T Consensus       158 ~~~p~~~~~e~l~~  171 (198)
T d2jhfa1         158 AKIDAAFALDPLIT  171 (198)
T ss_dssp             EECCTTSCCGGGEE
T ss_pred             EECCCCCCHHHHHH
Confidence            99999988876554

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=2.5e-35  Score=229.34  Aligned_cols=156  Identities=24%  Similarity=0.382  Sum_probs=142.4

Q ss_pred             eeEEEecCCCCeEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCCC--CCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           24 RAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        24 ka~~~~~~~~~l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~~--~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      ||+++++.++||++++++.|++ +++||||||.+++||++|++.+.|.+..  ...+|.++|||++|+|+++|++|++++
T Consensus         1 kA~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~   80 (171)
T d1h2ba1           1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE   80 (171)
T ss_dssp             CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred             CEEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCC
Confidence            7999999999999999999986 6899999999999999999999987643  246799999999999999999999999


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||||++.+...|++|..|+.|++++|.+...   .|...+|                   +|+||++++.+.++++|++
T Consensus        81 ~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  138 (171)
T d1h2ba1          81 KGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLNIDG-------------------GFAEFMRTSHRSVIKLPKD  138 (171)
T ss_dssp             TTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTTBCC-------------------SSBSEEEECGGGEEECCTT
T ss_pred             CCCEEEEcCccCCCCccccccccccccccccc---ceeeccc-------------------ccceeeeehhhcceecCCC
Confidence            99999999999999999999999999988775   4555566                   9999999999999999999


Q ss_pred             CCccceeeccchhHHHhheee
Q 028493          181 IPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al~  201 (208)
                      ++++.++++.+.+.|+|+++.
T Consensus       139 ~~~e~aa~~~~~~~ta~~al~  159 (171)
T d1h2ba1         139 VRVEVDIHKLDEINDVLERLE  159 (171)
T ss_dssp             CCCCEEEEEGGGHHHHHHHHH
T ss_pred             CCHHHHHHHHhHHHHHHHHHH
Confidence            999988888899999999874

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=100.00  E-value=3.1e-35  Score=229.94  Aligned_cols=155  Identities=25%  Similarity=0.395  Sum_probs=137.9

Q ss_pred             eeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC--CCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        24 ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~--~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      .|++++++++ |+++|++.|+|+++||||||++++||++|++.+++....  ..+.|.++|||++|+|+++|++|++|++
T Consensus         3 maAVl~g~~~-l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~~   81 (178)
T d1e3ja1           3 LSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKK   81 (178)
T ss_dssp             EEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCT
T ss_pred             eEEEEEcCCc-EEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCCC
Confidence            4556778777 999999999999999999999999999999999875432  2467899999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      ||||+..+...|+.|+.|+.|..++|++....  .+...+|                   +|+||+++|.+.++++|+++
T Consensus        82 GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~--~~~~~~G-------------------~~aey~~v~~~~~~~iP~~~  140 (178)
T d1e3ja1          82 GDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC--ATPPDDG-------------------NLARYYVHAADFCHKLPDNC  140 (178)
T ss_dssp             TCEEEECCEECCSSSHHHHTTCGGGCTTCEET--TBTTBCC-------------------SCBSEEEEEGGGEEECCTTC
T ss_pred             CCEEEECcccccCCccccccCCccccccccce--ecccccc-------------------ccceeeeecccceeeCCCCC
Confidence            99999999999999999999999999988763  2223445                   99999999999999999999


Q ss_pred             CccceeeccchhHHHhhee
Q 028493          182 PLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++++.+++.+.|+|+++
T Consensus       141 ~~~~aa~~~~~~~ta~~a~  159 (178)
T d1e3ja1         141 NVKQLVTHSFKLEQTVDAF  159 (178)
T ss_dssp             CCGGGEEEEEEGGGHHHHH
T ss_pred             CHHHHHHHHhHHHHHHHHH
Confidence            9999999999999999986

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=100.00  E-value=1.4e-34  Score=226.26  Aligned_cols=147  Identities=22%  Similarity=0.173  Sum_probs=129.8

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||++++++++ ++++|+|.|.|+++||||||.+++||++|++.+.+..+. .++|.++|||++|+|+++|++|++|++|
T Consensus         1 MKa~v~~~~~~-l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~-~~~P~i~GhE~~G~V~~vG~~v~~~~vG   78 (177)
T d1jqba1           1 MKGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALG-DRKNMILGHEAVGEVVEVGSEVKDFKPG   78 (177)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTC-CCSSEECCCCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEEeCCC-eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCC-CCCCccCcceeeEEeeecccccceecCC
Confidence            89999999988 999999999999999999999999999999877654433 4789999999999999999999999999


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEec--CcEEEcCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV--THVVKITPD  180 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~--~~v~~ip~~  180 (208)
                      |||+..+..+|++|++|+.|++++|........+|...+|                   +|+||+++|.  .+++++|++
T Consensus        79 drV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G-------------------~~aEy~~vp~a~~~l~~iP~~  139 (177)
T d1jqba1          79 DRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDG-------------------VFGEYFHVNDADMNLAILPKD  139 (177)
T ss_dssp             CEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCC-------------------SSBSSEEESSHHHHCEECCTT
T ss_pred             CcEEEeeeeccccccchhhhhhcccccccccccccCCCCh-------------------hcCeeEEEEhhhCeEEECCCC
Confidence            9999999999999999999999999987654344445556                   9999999985  468999999


Q ss_pred             CCccceeecc
Q 028493          181 IPLDIACLLS  190 (208)
Q Consensus       181 ~~~~~aa~l~  190 (208)
                      +++++++...
T Consensus       140 ~~~~~~~~~~  149 (177)
T d1jqba1         140 VDLSKLVTHV  149 (177)
T ss_dssp             SCGGGGEEEE
T ss_pred             cchHHHHHHH
Confidence            9998876543

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=5.6e-34  Score=222.45  Aligned_cols=156  Identities=28%  Similarity=0.385  Sum_probs=134.4

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC-------CCCCCceeccceeEEEEEeCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-------MAVFPRILGHEAVGVVESVGGG   95 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~-------~~~~p~~~G~e~~G~Vv~vG~~   95 (208)
                      |||+++++++++|+++|++.|+|+++||||||.+++||++|+++++|.++.       ..++|.++|||++|+|+++|++
T Consensus         1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~   80 (177)
T d1jvba1           1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (177)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence            899999999988999999999999999999999999999999999987532       2468999999999999999999


Q ss_pred             CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCc-E
Q 028493           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH-V  174 (208)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~-v  174 (208)
                      +++|++||+|++.+...|+.|..|+.|++++|+....   .|...+|                   +|+||++++..+ +
T Consensus        81 v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~vp~~~~~  138 (177)
T d1jvba1          81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGINFDG-------------------AYAEYVIVPHYKYM  138 (177)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEESCGGGE
T ss_pred             ccccccCceEeeeeccccccccccccccccccCCcce---eeecccc-------------------ccccEEEEEhHHeE
Confidence            9999999999999999999999999999999998875   4555556                   999999998655 5


Q ss_pred             EEcCCCCCccceeeccchhHHHhhee
Q 028493          175 VKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       175 ~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      +++|+..+.+.++....++.++++++
T Consensus       139 ~~~~~~~~~~~a~~~~~~~~~a~~~~  164 (177)
T d1jvba1         139 YKLRRVKPMITKTMKLEEANEAIDNL  164 (177)
T ss_dssp             EECSSSCCCCEEEEEGGGHHHHHHHH
T ss_pred             EECCCCChHHHHHHHHHHHHHHHHHH
Confidence            56665555555555556777887765

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.9e-34  Score=223.11  Aligned_cols=144  Identities=28%  Similarity=0.451  Sum_probs=122.5

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||++.+++++||+++|++.|+|++|||||||.+++||++|++++.|..+. ..+|.++|||++|+|+++|++|+++++|
T Consensus         1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~-~~~P~i~GhE~~G~V~~vG~~V~~~~vG   79 (179)
T d1uufa1           1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAG-TVYPCVPGHEIVGRVVAVGDQVEKYAPG   79 (179)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSC-CCSSBCCCCCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeecc-ccccccccccccccchhhccccccCCCC
Confidence            799999999999999999999999999999999999999999999998765 5789999999999999999999999999


Q ss_pred             CEEeeec-cCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          103 DLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       103 d~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      |+|...+ ...|++|++|+.|++|+|++............+              ....|+|+||+++++++++++|+..
T Consensus        80 drV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~--------------~~~~GgfaEy~~v~~~~~~~ip~~~  145 (179)
T d1uufa1          80 DLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEP--------------GHTLGGYSQQIVVHERYVLRIRVAD  145 (179)
T ss_dssp             CEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTT--------------SBCCCSSBSEEEEEGGGCEECCCCC
T ss_pred             CEEEEcccccccCccccccCcccccCCCccccccccCCCCC--------------cccccccceEEEechHHEEECCCCC
Confidence            9997665 468999999999999999987653111111111              0112499999999999999998654

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-33  Score=222.94  Aligned_cols=167  Identities=23%  Similarity=0.271  Sum_probs=138.5

Q ss_pred             cceeeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCC
Q 028493           19 KIIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV   96 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v   96 (208)
                      .|.+|||+++.++++.  +++++.+.++++++||||||.++|||++|++++.|.++. .++|.++|||++|+|+++|+++
T Consensus         3 ~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~-~~~P~i~GHE~~G~Vv~vG~~v   81 (192)
T d1piwa1           3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN-MKMPLVVGHEIVGKVVKLGPKS   81 (192)
T ss_dssp             TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSC-CCSSEECCCCEEEEEEEECTTC
T ss_pred             CCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCC-CCCCcCcccccccchhhccccc
Confidence            4789999999888764  777888777789999999999999999999999998765 6789999999999999999987


Q ss_pred             -CCCCCCCEEeeecc-CCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcE
Q 028493           97 -EEVREGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV  174 (208)
Q Consensus        97 -~~~~vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v  174 (208)
                       +.+++||||...+. ..|+.|++|+.|.+++|.+..... .+....|..              ..|+|+||++++..++
T Consensus        82 ~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~-~~~~~~G~~--------------~~Ggfaey~~v~~~~~  146 (192)
T d1piwa1          82 NSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTY-SQPYEDGYV--------------SQGGYANYVRVHEHFV  146 (192)
T ss_dssp             CSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESS-SCBCTTSCB--------------CCCSSBSEEEEEGGGE
T ss_pred             ccccCCCCeeeEeeeccCCCCchhhhcCCccccccccccc-ccccccccc--------------cccceeeEEEeehHHe
Confidence             66999999977664 579999999999999999876531 111112211              1239999999999999


Q ss_pred             EEcCCCCCccceeeccchhHHHhheee
Q 028493          175 VKITPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       175 ~~ip~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++|++++++.|+.+.+++.|||+++.
T Consensus       147 ~~iP~~l~~e~Aal~~~~~~ta~~~l~  173 (192)
T d1piwa1         147 VPIPENIWVETLPVGEAGVHEAFERME  173 (192)
T ss_dssp             EECCTTCCEEEEESSHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999887766666789999873

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=221.98  Aligned_cols=157  Identities=22%  Similarity=0.339  Sum_probs=135.5

Q ss_pred             eeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC--CCCCCceeccceeEEEEEeCCCCCCC
Q 028493           22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEV   99 (208)
Q Consensus        22 ~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~--~~~~p~~~G~e~~G~Vv~vG~~v~~~   99 (208)
                      .++|++++++++ |+++|++.|+|+++||||||.+++||++|++++++....  ..++|.++|||++|+|+++|+++++|
T Consensus         7 ~~~a~V~~gp~~-l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~   85 (185)
T d1pl8a1           7 NNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHL   85 (185)
T ss_dssp             CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSC
T ss_pred             CCEEEEEeCCCe-EEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceeee
Confidence            567999999987 999999999999999999999999999999999864322  24678999999999999999999999


Q ss_pred             CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493          100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP  179 (208)
Q Consensus       100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~  179 (208)
                      ++||||+..+...|+.|++|+.|++++|....+.  .+...+|                   +|+||++++..+++++|+
T Consensus        86 ~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~--g~~~~~G-------------------~~aey~~~~~~~~~~lP~  144 (185)
T d1pl8a1          86 KPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFC--ATPPDDG-------------------NLCRFYKHNAAFCYKLPD  144 (185)
T ss_dssp             CTTCEEEECSEECSSCCHHHHTTCGGGCTTCEET--TBTTBCC-------------------SCBSEEEEEGGGEEECCT
T ss_pred             cccccceecceeccccchhhccchhchhccceee--ecccccc-------------------cceEEEEEchHHEEECCC
Confidence            9999999999999999999999999999988763  1123344                   899999999999999999


Q ss_pred             CCCccceeeccc-hhHHHhhee
Q 028493          180 DIPLDIACLLSC-GVSTGNYRT  200 (208)
Q Consensus       180 ~~~~~~aa~l~~-~~~ta~~al  200 (208)
                      ++++++++++++ .+.+||..+
T Consensus       145 ~~~~~~aa~~pl~~a~~a~~~~  166 (185)
T d1pl8a1         145 NVKPLVTHRFPLEKALEAFETF  166 (185)
T ss_dssp             TCGGGEEEEEEGGGHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHh
Confidence            999999887653 345666544

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.8e-33  Score=219.30  Aligned_cols=152  Identities=30%  Similarity=0.531  Sum_probs=128.1

Q ss_pred             cceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC-
Q 028493           19 KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE-   97 (208)
Q Consensus        19 ~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~-   97 (208)
                      |++.|||+++++++++|++++++.|.|+++||||||.++|||++|++.++|.++. .++|.++|||++|+|+++|++|+ 
T Consensus         1 m~~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~-~~~P~vlGHE~~G~V~~vG~~v~~   79 (184)
T d1vj0a1           1 MGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPR-VPLPIILGHEGAGRVVEVNGEKRD   79 (184)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEESSCCBC
T ss_pred             CCceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCc-cccccccceeeeeeeeEEeccccc
Confidence            4678999999999989999999999999999999999999999999999998765 57899999999999999999986 


Q ss_pred             ----CCCCCCEEeeeccCCCCCCccccCCCC-CCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEe-c
Q 028493           98 ----EVREGDLVLPVFQGDCGECRDCKSPKS-NICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD-V  171 (208)
Q Consensus        98 ----~~~vGd~V~~~~~~~c~~c~~~~~g~~-~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~-~  171 (208)
                          .+++||+|+..+..+|++|++|+.|++ +.|++.+.   +|... +..++.+..          |+|+||++++ .
T Consensus        80 ~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~---~G~~~-~~~~~~~~~----------Gg~ae~~~v~~~  145 (184)
T d1vj0a1          80 LNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINR-GCSEYPHLR----------GCYSSHIVLDPE  145 (184)
T ss_dssp             TTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTC-CSSSTTCCC----------SSSBSEEEECTT
T ss_pred             cccccccceeeeEeccccccccChhHhCccccccCCCcee---eccCC-CCCCCCCcc----------eeCcCcEEechh
Confidence                468999999999999999999999995 56887765   33211 111222222          3999999996 5


Q ss_pred             CcEEEcCCCCCccc
Q 028493          172 THVVKITPDIPLDI  185 (208)
Q Consensus       172 ~~v~~ip~~~~~~~  185 (208)
                      .+++++|+++++++
T Consensus       146 ~~v~~ip~~l~~~~  159 (184)
T d1vj0a1         146 TDVLKVSEKITHRL  159 (184)
T ss_dssp             CCEEEECTTCCEEE
T ss_pred             HcEEECCCCCCHHH
Confidence            78999999999764

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=1.5e-32  Score=212.94  Aligned_cols=154  Identities=31%  Similarity=0.498  Sum_probs=134.3

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||+++++++++|+++|++.|+|+++||||||++++||++|++.+++.......+|.++|||++|+|+++|++++++++|
T Consensus         1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vG   80 (171)
T d1rjwa1           1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (171)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceee
Confidence            89999999998899999999999999999999999999999999987765556789999999999999999999999999


Q ss_pred             CEEeeecc-CCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          103 DLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       103 d~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      |||+..+. ..|+.|..|+.+..++|.....   .|...+|                   +|+||++++.++++++|+++
T Consensus        81 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~~  138 (171)
T d1rjwa1          81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYSVDG-------------------GYAEYCRAAADYVVKIPDNT  138 (171)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGCEECCTTC
T ss_pred             eEEeeccccccccccccccCCCccccccccc---cceeccC-------------------ccccceEecHHHEEECCCCC
Confidence            99987664 5688999999999999988775   5555566                   99999999999999999999


Q ss_pred             CccceeeccchhHHHhhee
Q 028493          182 PLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       182 ~~~~aa~l~~~~~ta~~al  200 (208)
                      +++.|++ .+ +.++++++
T Consensus       139 ~~e~A~l-~~-~~~~~~~~  155 (171)
T d1rjwa1         139 IIEVQPL-EK-INEVFDRM  155 (171)
T ss_dssp             CEEEEEG-GG-HHHHHHHH
T ss_pred             CHHHHHH-HH-HHHHHHHH
Confidence            9876654 33 34555544

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.98  E-value=2.1e-33  Score=223.70  Aligned_cols=163  Identities=23%  Similarity=0.311  Sum_probs=131.9

Q ss_pred             eeeEEEecCCCCeEEEEeecCCC-------CCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPP-------KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~-------~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~   95 (208)
                      +||++++++++ |+++|++.|++       +++||+|||.+++||++|+++++|.++.  ++|.++|||++|+|+++|++
T Consensus         2 ~kA~v~~~~~~-le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~~--~~P~v~GHE~~G~Vv~vG~~   78 (201)
T d1kola1           2 NRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA--QVGLVLGHEITGEVIEKGRD   78 (201)
T ss_dssp             EEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC--CTTCBCCCCEEEEEEEECTT
T ss_pred             cEEEEEeCCCc-eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCccc--ccceeccceeeeeeeccccc
Confidence            59999999997 99999999864       4699999999999999999999998876  78999999999999999999


Q ss_pred             CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEec--Cc
Q 028493           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV--TH  173 (208)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~--~~  173 (208)
                      |++|++||||++.+..+|++|+.|+.|++|.|.........+..  |.....          ...|+|+||+++|.  .+
T Consensus        79 V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~--g~~~~~----------~~~Gg~aeyv~vp~~~~~  146 (201)
T d1kola1          79 VENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAY--GYVDMG----------DWTGGQAEYVLVPYADFN  146 (201)
T ss_dssp             CCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEB--TCTTSC----------CBCCCSBSEEEESSHHHH
T ss_pred             cccccccceeEEeeeeeccCChhhhCCCcccccccccccccccc--cccCCC----------ccccccccEEEeehHHCe
Confidence            99999999999999999999999999999999886643211111  100000          01249999999985  36


Q ss_pred             EEEcCCCCCccceeeccchhHHHhhee
Q 028493          174 VVKITPDIPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       174 v~~ip~~~~~~~aa~l~~~~~ta~~al  200 (208)
                      ++++|++.++.+++++...+.++++++
T Consensus       147 l~~iPd~~~~~~~~~~~~~~~~~~~a~  173 (201)
T d1kola1         147 LLKLPDRDKAMEKINIAEVVGVQVISL  173 (201)
T ss_dssp             CEECSCHHHHHHTCCHHHHHTEEEECG
T ss_pred             EEECCCCCChHHHHHHHHHHHHHHHHH
Confidence            999999876666666656666666654

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-29  Score=191.49  Aligned_cols=133  Identities=22%  Similarity=0.297  Sum_probs=119.1

Q ss_pred             eeeeeEEEecCCCC--eEEE-EeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC
Q 028493           21 IRCRAAISRIPGKP--LVME-EIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE   97 (208)
Q Consensus        21 ~~~ka~~~~~~~~~--l~~~-~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~   97 (208)
                      +.|||+++++.+.+  |+++ +++.|.|+++||||||.+++||++|.+.++|.+.....+|.++|||++|+|+++|++++
T Consensus         1 ~~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~   80 (150)
T d1yb5a1           1 KLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNAS   80 (150)
T ss_dssp             CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCT
T ss_pred             CceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceee
Confidence            36999999988776  8874 68999999999999999999999999999998877667899999999999999999999


Q ss_pred             CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493           98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI  177 (208)
Q Consensus        98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i  177 (208)
                      +|++||||+....                             .+|                   +|+||++++.+.++++
T Consensus        81 ~~~vGdrV~~~~~-----------------------------~~G-------------------~~ae~~~v~~~~~~~i  112 (150)
T d1yb5a1          81 AFKKGDRVFTSST-----------------------------ISG-------------------GYAEYALAADHTVYKL  112 (150)
T ss_dssp             TCCTTCEEEESCC-----------------------------SSC-------------------SSBSEEEEEGGGEEEC
T ss_pred             ccccCcccccccc-----------------------------ccc-------------------cccccccccccccccc
Confidence            9999999975321                             124                   9999999999999999


Q ss_pred             CCCCCccceeeccchhHHHhheee
Q 028493          178 TPDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       178 p~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      |+++++++|++++++..|+|++++
T Consensus       113 P~~ls~~~Aa~~~~~~~ta~~~~~  136 (150)
T d1yb5a1         113 PEKLKPVIGSQYPLEKVAEAHENI  136 (150)
T ss_dssp             CTTCCCCEEEEEEGGGHHHHHHHH
T ss_pred             cCCCCHHHHHHhhhhhhhehhhhe
Confidence            999999999999999999998774

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=6.8e-28  Score=179.31  Aligned_cols=123  Identities=20%  Similarity=0.194  Sum_probs=112.0

Q ss_pred             eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493           23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG  102 (208)
Q Consensus        23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG  102 (208)
                      |||+++++.+++++++|++.|.|+++||+|||++++||++|++.++|.++....+|.++|||++|+|           +|
T Consensus         1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------vG   69 (131)
T d1iz0a1           1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EG   69 (131)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------TT
T ss_pred             CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------cc
Confidence            8999999999889999999999999999999999999999999999988776678999999999999           49


Q ss_pred             CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493          103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP  182 (208)
Q Consensus       103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~  182 (208)
                      |+|+....                              +|                   +|+||++++.+.++++|++++
T Consensus        70 d~V~~~~~------------------------------~G-------------------~~aey~~v~~~~~~~~P~~~~  100 (131)
T d1iz0a1          70 RRYAALVP------------------------------QG-------------------GLAERVAVPKGALLPLPEGRP  100 (131)
T ss_dssp             EEEEEECS------------------------------SC-------------------CSBSEEEEEGGGCEECCTTCC
T ss_pred             ceEEEEec------------------------------cC-------------------ccceeeeeCHHHeEEccCCCC
Confidence            99976432                              23                   999999999999999999999


Q ss_pred             ccceeeccchhHHHhheeeeeEE
Q 028493          183 LDIACLLSCGVSTGNYRTLVDVY  205 (208)
Q Consensus       183 ~~~aa~l~~~~~ta~~al~~~~~  205 (208)
                      +++||.+++.+.|||++|+...+
T Consensus       101 ~~~aa~~~~~~~Ta~~al~~~g~  123 (131)
T d1iz0a1         101 VVGPVFPFAEAEAAFRALLDRGH  123 (131)
T ss_dssp             CEEEEEEGGGHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999976543

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1e-26  Score=175.94  Aligned_cols=133  Identities=15%  Similarity=0.109  Sum_probs=114.4

Q ss_pred             eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493           23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR  100 (208)
Q Consensus        23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~  100 (208)
                      |||+++++++++  +++++++.|+|++|||+|||.|++||++|.+...|.++....+|.++|+|++|+|+++|.+  .++
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~~--~~~   78 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSEDP--RFH   78 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECST--TCC
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeeccC--Ccc
Confidence            899999998876  7889999999999999999999999999999999987776678999999999999998764  799


Q ss_pred             CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493          101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD  180 (208)
Q Consensus       101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~  180 (208)
                      +||+|+....                        ..|...+|                   +|+||+++|.+.++++|++
T Consensus        79 ~g~~v~~~~~------------------------~~g~~~~G-------------------~~Aey~~v~~~~vv~lP~~  115 (146)
T d1o89a1          79 AGQEVLLTGW------------------------GVGENHWG-------------------GLAEQARVKGDWLVAMPQG  115 (146)
T ss_dssp             TTCEEEEECT------------------------TBTTTBCC-------------------SSBSEEEECGGGCEECCTT
T ss_pred             ceeeEEeecc------------------------cceecCCC-------------------cceeeeeeeeeeEEECCCC
Confidence            9999986432                        13334445                   9999999999999999999


Q ss_pred             CCccceeeccchhHHHhhee
Q 028493          181 IPLDIACLLSCGVSTGNYRT  200 (208)
Q Consensus       181 ~~~~~aa~l~~~~~ta~~al  200 (208)
                      +++++||++++++.||+..+
T Consensus       116 ls~~eAA~l~~a~~tA~~~~  135 (146)
T d1o89a1         116 QAAKEISLSEAPNFAEAIIN  135 (146)
T ss_dssp             SCCEEECGGGHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHH
Confidence            99999999999988887654

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.3e-26  Score=173.96  Aligned_cols=129  Identities=22%  Similarity=0.311  Sum_probs=110.5

Q ss_pred             eeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493           24 RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE  101 (208)
Q Consensus        24 ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v  101 (208)
                      +.++++++|.+  |++++++.|.|+++||+|||++++||++|+++++|.++. ..+|.++|||++|+|+++|++|++|++
T Consensus         2 ~~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~v   80 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVKHIKA   80 (147)
T ss_dssp             EEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCSCEEEEEEEECTTCCSCCT
T ss_pred             eEEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCC-Ccceeeeccccccceeeeeeecccccc
Confidence            45788888877  999999999999999999999999999999999998765 678999999999999999999999999


Q ss_pred             CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493          102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI  181 (208)
Q Consensus       102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~  181 (208)
                      ||||+...                             ...|                   +|+||.+++.+.++++|+++
T Consensus        81 GdrV~~~~-----------------------------~~~G-------------------~~ae~~~v~~~~~~~~P~~~  112 (147)
T d1qora1          81 GDRVVYAQ-----------------------------SALG-------------------AYSSVHNIIADKAAILPAAI  112 (147)
T ss_dssp             TCEEEESC-----------------------------CSSC-------------------CSBSEEEEEGGGEEECCTTS
T ss_pred             cceeeeec-----------------------------cccc-------------------cceeEEEEehHHeEEcCccc
Confidence            99996321                             1123                   89999999999999999999


Q ss_pred             Cccce--eeccchhHHHhheee
Q 028493          182 PLDIA--CLLSCGVSTGNYRTL  201 (208)
Q Consensus       182 ~~~~a--a~l~~~~~ta~~al~  201 (208)
                      +++++  +.+++...|+|++++
T Consensus       113 ~~~~a~a~~~~~~~~~~~~~l~  134 (147)
T d1qora1         113 KVDVAEQQKYPLKDAQRAHEIL  134 (147)
T ss_dssp             CCCCCGGGEEEGGGHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHH
Confidence            88754  455667777777653

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=7.1e-27  Score=177.80  Aligned_cols=136  Identities=18%  Similarity=0.222  Sum_probs=115.4

Q ss_pred             eeeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC
Q 028493           21 IRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        21 ~~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      .+|||+++++.+++  +++++++.|+|++|||||||.+++||++|++.+.|.++.....|.++|||++|+|++  ..++.
T Consensus         2 ~~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~~   79 (152)
T d1xa0a1           2 SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHPR   79 (152)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSSS
T ss_pred             CceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCCc
Confidence            46899999998876  457899999999999999999999999999999988776567899999999999999  55678


Q ss_pred             CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (208)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip  178 (208)
                      |++||+|+....                        ..+...+|                   +|+||+++|.+.++++|
T Consensus        80 ~~~g~~v~~~~~------------------------~~~~~~~G-------------------~~aEy~~v~~~~~~~iP  116 (152)
T d1xa0a1          80 FREGDEVIATGY------------------------EIGVTHFG-------------------GYSEYARLHGEWLVPLP  116 (152)
T ss_dssp             CCTTCEEEEEST------------------------TBTTTBCC-------------------SSBSEEEECGGGCEECC
T ss_pred             cccCCEEEEecC------------------------ccccccCC-------------------CcceeeeehhhccccCC
Confidence            999999976432                        12223344                   99999999999999999


Q ss_pred             CCCCccceeeccchhHHHhheeee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al~~  202 (208)
                      ++++ ++||++++++.|+|.++..
T Consensus       117 ~~l~-~~aa~l~~a~~ta~~~~~~  139 (152)
T d1xa0a1         117 KGLE-RIAQEISLAELPQALKRIL  139 (152)
T ss_dssp             TTHH-HHEEEEEGGGHHHHHHHHH
T ss_pred             CCCC-HHHHHHHHHHHHHHHHHHH
Confidence            9998 5688888898999887753

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=6.2e-26  Score=174.24  Aligned_cols=136  Identities=21%  Similarity=0.220  Sum_probs=118.8

Q ss_pred             eeeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC
Q 028493           21 IRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE   98 (208)
Q Consensus        21 ~~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~   98 (208)
                      ++|||++++++++.  |++++++.|++++|||||||+|++||++|++.+.|.++.....|.++|+|++|+|++  +.+.+
T Consensus         2 ~~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~   79 (162)
T d1tt7a1           2 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPR   79 (162)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTT
T ss_pred             CcEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccc
Confidence            57999999987755  999999999999999999999999999999999998876567789999999999998  55678


Q ss_pred             CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493           99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT  178 (208)
Q Consensus        99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip  178 (208)
                      +++||+|+.....                        .|...+|                   +|+||+++|.+.++++|
T Consensus        80 ~~~g~~v~~~~~~------------------------~g~~~~G-------------------~~aey~~v~~~~l~~iP  116 (162)
T d1tt7a1          80 FAEGDEVIATSYE------------------------LGVSRDG-------------------GLSEYASVPGDWLVPLP  116 (162)
T ss_dssp             CCTTCEEEEESTT------------------------BTTTBCC-------------------SSBSSEEECGGGEEECC
T ss_pred             cccceeeEeeecc------------------------ceecccc-------------------ccceEEEecHHHEEECC
Confidence            9999999865421                        3334445                   99999999999999999


Q ss_pred             CCCCccceeeccchhHHHhheee
Q 028493          179 PDIPLDIACLLSCGVSTGNYRTL  201 (208)
Q Consensus       179 ~~~~~~~aa~l~~~~~ta~~al~  201 (208)
                      +++++++||++++.++|+|.++.
T Consensus       117 ~~ls~~~Aa~~~~~~~ta~~~~~  139 (162)
T d1tt7a1         117 QNLSLKEAMVDQLLTIVDREVSL  139 (162)
T ss_dssp             TTCCHHHHHHSCSTTSEEEEECS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998764

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.87  E-value=4.1e-22  Score=153.58  Aligned_cols=132  Identities=21%  Similarity=0.224  Sum_probs=108.5

Q ss_pred             eeeeeEEEecCCCC---eEE--EEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC---------CCCCCceecccee
Q 028493           21 IRCRAAISRIPGKP---LVM--EEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP---------MAVFPRILGHEAV   86 (208)
Q Consensus        21 ~~~ka~~~~~~~~~---l~~--~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~---------~~~~p~~~G~e~~   86 (208)
                      .++||++++++++|   |++  .+++.|+|+++||||||++++||++|+++++|.++.         ....|.++|+|++
T Consensus         2 ~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~   81 (175)
T d1gu7a1           2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGL   81 (175)
T ss_dssp             EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCE
T ss_pred             ceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccc
Confidence            57899999998876   444  566777889999999999999999999999987644         1246789999999


Q ss_pred             EEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccce
Q 028493           87 GVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEY  166 (208)
Q Consensus        87 G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~  166 (208)
                      |+|+++|.++..++.||+|.....                             ..|                   +|+||
T Consensus        82 g~V~~~~~~~~~~~~g~~v~~~~~-----------------------------~~g-------------------~~aey  113 (175)
T d1gu7a1          82 FEVIKVGSNVSSLEAGDWVIPSHV-----------------------------NFG-------------------TWRTH  113 (175)
T ss_dssp             EEEEEECTTCCSCCTTCEEEESSS-----------------------------CCC-------------------CSBSE
T ss_pred             cccccccccccccccccceecccc-----------------------------ccc-------------------cccce
Confidence            999999999999999999975322                             123                   89999


Q ss_pred             EEEecCcEEEcCCCCCccceeeccchhHHHhheeee
Q 028493          167 TVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTLV  202 (208)
Q Consensus       167 ~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al~~  202 (208)
                      ++++.++++++|++++.+.++  .+..+|||+++..
T Consensus       114 ~~v~~~~~~~iP~~~~~~~a~--~~~~~ta~~~l~~  147 (175)
T d1gu7a1         114 ALGNDDDFIKLPNPAQSKANG--KPNGLTDAKSIET  147 (175)
T ss_dssp             EEEEGGGEEEECCHHHHHHTT--CSCCCCCCCCEEE
T ss_pred             eeehhhhccCCCccchhhhhc--cchHHHHHHHHHH
Confidence            999999999999987644443  4567899988864

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.60  E-value=5.2e-15  Score=110.94  Aligned_cols=122  Identities=17%  Similarity=0.160  Sum_probs=93.0

Q ss_pred             eeeeEEEecC--CCC----eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCC
Q 028493           22 RCRAAISRIP--GKP----LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG   95 (208)
Q Consensus        22 ~~ka~~~~~~--~~~----l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~   95 (208)
                      +.|.|++.+.  +.|    |++++.++|+|++||||||++|.++++....+...     .+....+..+++|+|++  +.
T Consensus         3 ~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~~-----~~~g~~~~g~~vg~Vv~--S~   75 (147)
T d1v3va1           3 KAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASKR-----LKEGAVMMGQQVARVVE--SK   75 (147)
T ss_dssp             EEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGGG-----SCTTSBCCCCEEEEEEE--ES
T ss_pred             ccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEcccccccccc-----cccCCccccceEEEEEE--eC
Confidence            3578888765  333    99999999999999999999999999877654432     23345677789999998  66


Q ss_pred             CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEE
Q 028493           96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV  175 (208)
Q Consensus        96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~  175 (208)
                      .++|++||+|.+.                                 +                   +|+||.+++...+.
T Consensus        76 ~~~f~~GD~V~g~---------------------------------~-------------------gw~ey~v~~~~~l~  103 (147)
T d1v3va1          76 NSAFPAGSIVLAQ---------------------------------S-------------------GWTTHFISDGKGLE  103 (147)
T ss_dssp             CTTSCTTCEEEEC---------------------------------C-------------------CSBSEEEECSSSCE
T ss_pred             CCcccCCCEEEEc---------------------------------c-------------------CCEeEEEeccceee
Confidence            7899999999753                                 2                   89999999999999


Q ss_pred             EcCCCCC-----ccceeeccchhHHH-hheeee
Q 028493          176 KITPDIP-----LDIACLLSCGVSTG-NYRTLV  202 (208)
Q Consensus       176 ~ip~~~~-----~~~aa~l~~~~~ta-~~al~~  202 (208)
                      ++|...+     ....++++..++|| |..|+.
T Consensus       104 kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~~  136 (147)
T d1v3va1         104 KLLTEWPDKKIQYHEHVTKGFENMPAAFIEMLN  136 (147)
T ss_dssp             ECCTTCCTTSSCCCEEEEECGGGHHHHHHHHHT
T ss_pred             EccccccccccchhhhHhccccchHHHHHHhhC
Confidence            9986543     33455677777774 545543

>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]

Probab=87.21  E-value=1.1  Score=29.01  Aligned_cols=24  Identities=38%  Similarity=0.569  Sum_probs=19.0

Q ss_pred             ceeEEEEEeCCCCC---------CCCCCCEEee
Q 028493           84 EAVGVVESVGGGVE---------EVREGDLVLP  107 (208)
Q Consensus        84 e~~G~Vv~vG~~v~---------~~~vGd~V~~  107 (208)
                      ...|+|+++|++..         .+++||+|+.
T Consensus        35 ~~~g~VvavG~g~~~~~g~~~~~~vk~GD~Vl~   67 (97)
T d1aono_          35 STRGEVLAVGNGRILENGEVKPLDVKVGDIVIF   67 (97)
T ss_dssp             CCEEEEEEECSBCCTTSSCCCBCSCCTTCEEEE
T ss_pred             ceeEEEEEEeeeEEccCCcCccccCCCCCEEEE
Confidence            35699999998643         3899999975

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.69  E-value=0.69  Score=30.20  Aligned_cols=24  Identities=42%  Similarity=0.515  Sum_probs=19.0

Q ss_pred             eeEEEEEeCCCCC----------CCCCCCEEeee
Q 028493           85 AVGVVESVGGGVE----------EVREGDLVLPV  108 (208)
Q Consensus        85 ~~G~Vv~vG~~v~----------~~~vGd~V~~~  108 (208)
                      ..|+|+++|++..          .+++||+|+..
T Consensus        38 ~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~~   71 (99)
T d1p3ha_          38 QEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYS   71 (99)
T ss_dssp             EEEEEEEECCCEECSSSSCEECCSCCTTCEEEEE
T ss_pred             eEEEEEEECCceEcCCCCEecCCeeecCCEEEEc
Confidence            4699999999742          37899999754