Citrus Sinensis ID: 028591

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSFRFFSFEWYTVQNCI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEEEHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcc
Coil and Loop (DISEMBL)
MILLQICVASVYFLTedsfnqglnphIYVTYRHaagslmmfPFAYFlerkirpkLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFykgpavpslkgapihlgtnsvhenwlKGSILTVASCILWSSFYImqvsnpstsfrffsfewytvqnci
Flexible Loop (DISEMBL)
MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSFRFFSFEWYTVQNCI
Low Complexity Region (SEG)
MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTlavfleifllsllgvslalnlYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSFRFFSFEWYTVQNCI
Disordered region (IsUnstruct)
*ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSFRFFSFEWYTVQN**
Disordered Region (DISOPRED)
MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPS****************WLKGSILTVASCILWSSFYIMQVSNPSTSFRFFSFEWYTVQNCI
Disordered Region (DISEMBL)
MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSFRFFSFEWYTVQNCI
Disordered Region (DISPRO)
MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKG**********HENWLKGSILTVASCILWSSFYIMQVSNPSTSFRFFSFEWYTVQNCI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSFRFFSFEWYTVQNCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q501F8	373	WAT1-related protein At4g	yes	no	0.893	0.495	0.395	2e-36
O80638	374	WAT1-related protein At2g	no	no	0.879	0.486	0.403	3e-35
Q9FL41	402	WAT1-related protein At5g	no	no	0.893	0.460	0.372	5e-34
Q9LPF1	370	WAT1-related protein At1g	no	no	0.893	0.5	0.375	2e-33
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.893	0.486	0.368	3e-33
Q9SUF1	384	WAT1-related protein At4g	no	no	0.893	0.481	0.361	7e-33
Q9LXX8	377	WAT1-related protein At3g	no	no	0.908	0.498	0.351	2e-31
F4HZQ7	389	WAT1-related protein At1g	no	no	0.893	0.475	0.348	8e-31
F4IJ08	394	WAT1-related protein At2g	no	no	0.888	0.467	0.354	2e-30
Q8GXB4	374	WAT1-related protein At1g	no	no	0.917	0.508	0.335	4e-30

>sp|Q501F8|WTR32_ARATH WAT1-related protein At4g08300 OS=Arabidopsis thaliana GN=At4g08300 PE=2 SV=1

 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/192 (39%), Positives = 114/192 (59%), Gaps = 7/192 (3%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           +I LQ   A +Y +T  SF  G+N  I  TYRH   ++++ PFA  LERKIRPK+T  +F
Sbjct: 15  IISLQFGYAGMYIITMVSFKHGMNHWILATYRHVVATIVIAPFALILERKIRPKMTWPLF 74

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
           L I  L  L   L  NLY+  MK    T+ +A VN +P +TFI+AV+FR+E V+++  R 
Sbjct: 75  LRILALGFLEPLLDQNLYYIGMKATSATYSSAFVNALPAITFIMAVIFRIETVNLKKTRS 134

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVP-------SLKGAPIHLGTNSVHENWLKGSILTVA 173
           +AK++GT  ++ G MV+  YKGPA+        SL G      + +  +NW+ G++  + 
Sbjct: 135 LAKVIGTAITVGGAMVMTLYKGPAIELFKTAHSSLHGGSSGTSSETTDQNWVTGTLAVMG 194

Query: 174 SCILWSSFYIMQ 185
           S   W+ F+I+Q
Sbjct: 195 SITTWAGFFILQ 206

Arabidopsis thaliana (taxid: 3702)

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score =  148 bits (373), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 114/186 (61%), Gaps = 4/186 (2%)

Query: 4   LQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEI 63
           LQ   A +  + + + NQG++PH+  +YRH   ++ + PFAYFL+RKIRPK+TL++F +I
Sbjct: 15  LQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIRPKMTLSIFFKI 74

Query: 64  FLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAK 123
            LL LL  ++  NLY+  MKY   TF  A+ N +P   FI+A +FRLE V+V+     AK
Sbjct: 75  LLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNVKKIHSQAK 134

Query: 124 ILGTLASLVGVMVIAFYKGPAVPSLKGAP--IHLGTNS--VHENWLKGSILTVASCILWS 179
           ILGT+ ++ G M++   KGP +P     P  IH  +++  V ++  KG+ L    CI W+
Sbjct: 135 ILGTIVTVGGAMLMTVVKGPLIPLPWANPHDIHQDSSNTGVKQDLTKGASLIAIGCICWA 194

Query: 180 SFYIMQ 185
            F  +Q
Sbjct: 195 GFINLQ 200

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  144 bits (362), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 121/196 (61%), Gaps = 11/196 (5%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           MI LQ   A +  +T+ S N G++ ++ V YRHA  + ++ PFA+F ERK +PK+T ++F
Sbjct: 22  MISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKITFSIF 81

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
           +++F+L LLG  +  N Y+  +KY  PTF  A+ N +P MTFI+AV+FR+E++D++    
Sbjct: 82  MQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKKLWC 141

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNS-----------VHENWLKGSI 169
            AKI GT+ ++ G M++  YKGP V       +H+  +S             + +LKGSI
Sbjct: 142 QAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFLKGSI 201

Query: 170 LTVASCILWSSFYIMQ 185
           L + + + W+S +++Q
Sbjct: 202 LLIFATLAWASLFVLQ 217

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPF1|WTR8_ARATH WAT1-related protein At1g44800 OS=Arabidopsis thaliana GN=At1g44800 PE=1 SV=1

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 117/189 (61%), Gaps = 4/189 (2%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           +I LQ   A +Y +T  SF  G++  +  TYRH   +++M PFA   ERKIRPK+TLA+F
Sbjct: 15  IISLQFGYAGMYIITMVSFKHGMDHWVLATYRHVVATVVMAPFALMFERKIRPKMTLAIF 74

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
             +  L +L   +  NLY+  +K    ++ +A  N +P +TFI+A++FRLE V+ R    
Sbjct: 75  WRLLALGILEPLMDQNLYYIGLKNTSASYTSAFTNALPAVTFILALIFRLETVNFRKVHS 134

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGA--PIHLGTNS--VHENWLKGSILTVASCI 176
           +AK++GT+ ++ G M++  YKGPA+  +K A    H G++S    ++W+ G+I  + S  
Sbjct: 135 VAKVVGTVITVGGAMIMTLYKGPAIEIVKAAHNSFHGGSSSTPTGQHWVLGTIAIMGSIS 194

Query: 177 LWSSFYIMQ 185
            W++F+I+Q
Sbjct: 195 TWAAFFILQ 203

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  141 bits (355), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 116/187 (62%), Gaps = 2/187 (1%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           M++LQ+ +A +  L++   N+G++ ++ V YRHA  +++M PFA++ ++K+RPK+TL +F
Sbjct: 19  MVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKKVRPKMTLMIF 78

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
            +I LL LL   +  NLY+  MKY   TF TA+ N +P +TF++A +F LE V +R  R 
Sbjct: 79  FKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVKLRCIRS 138

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSL--KGAPIHLGTNSVHENWLKGSILTVASCILW 178
             K++GTLA++ G M++   KGP +     KG   H    +   + +KG++L    C  +
Sbjct: 139 TGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHSAIKGAVLVTIGCFSY 198

Query: 179 SSFYIMQ 185
           + F I+Q
Sbjct: 199 ACFMILQ 205

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score =  140 bits (353), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 107/191 (56%), Gaps = 6/191 (3%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           MI LQ   A  Y +   + NQG N ++ + YR+   +L++ PFA   ERK+RPK+TL+V 
Sbjct: 17  MIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAALVLAPFALIFERKVRPKMTLSVL 76

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
            +I  L  L   L     +  M     T+ +A++N +P +TFIIA + R+E V++   R 
Sbjct: 77  WKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKVNIAEVRS 136

Query: 121 IAKILGTLASLVGVMVIAFYKGPAV------PSLKGAPIHLGTNSVHENWLKGSILTVAS 174
            AKI+GTL  L G +V+  YKGP +      P++     H   +  H NW+ G++L +  
Sbjct: 137 KAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGTLLILLG 196

Query: 175 CILWSSFYIMQ 185
           C+ WS FY++Q
Sbjct: 197 CVAWSGFYVLQ 207

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXX8|WTR27_ARATH WAT1-related protein At3g56620 OS=Arabidopsis thaliana GN=At3g56620 PE=2 SV=1

 Score =  135 bits (339), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 117/188 (62%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           M+ LQ   A +  +T+   ++G++ ++ V YR+A  +  + PFA   ERK+RPK+T  +F
Sbjct: 15  MVCLQFGYAGMNLVTKVVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVRPKMTFPIF 74

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
           ++IF+L+LLG  +  NLY+A +K   PTF  AV N +P +TFII+++ R+E V++R  R 
Sbjct: 75  MQIFVLALLGPLIDQNLYYAGLKLTSPTFAGAVTNIVPALTFIISIICRMEKVEMRKVRF 134

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSS 180
            AK++GTL  +VG M++  +K P +  L+        +   E++LK ++  + +   W+S
Sbjct: 135 QAKVVGTLVIVVGAMLMILFKIPLITFLRSHLTGHALSPAGEDYLKATVFLLIASFSWAS 194

Query: 181 FYIMQVSN 188
           F+++Q + 
Sbjct: 195 FFVLQAAT 202

Arabidopsis thaliana (taxid: 3702)

>sp|F4HZQ7|WTR5_ARATH WAT1-related protein At1g21890 OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1

 Score =  133 bits (335), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 115/198 (58%), Gaps = 13/198 (6%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           MI +Q   A +Y +T  S   G+N ++   YRHA  + ++ PFA F ERKIRPK+T  +F
Sbjct: 15  MISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERKIRPKMTFRIF 74

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
           L+I LL  +   L  NLY+  M Y   TF +A  N +P +TF++A++FRLE V+ +  R 
Sbjct: 75  LQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFRLESVNFKKVRS 134

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSLK-------------GAPIHLGTNSVHENWLKG 167
           IAK++GT+ ++ G +++  YKGP V  ++             G+    G  ++ ++W+ G
Sbjct: 135 IAKVVGTVITVSGALLMTLYKGPIVDFIRFGGGGGGGSDGAGGSHGGAGAAAMDKHWIPG 194

Query: 168 SILTVASCILWSSFYIMQ 185
           +++ +     W+ F+I+Q
Sbjct: 195 TLMLLGRTFGWAGFFILQ 212

Arabidopsis thaliana (taxid: 3702)

>sp|F4IJ08|WTR15_ARATH WAT1-related protein At2g40900 OS=Arabidopsis thaliana GN=At2g40900 PE=2 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 118/189 (62%), Gaps = 5/189 (2%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           M+ LQ   A +  +T+   ++G++ ++ V YR+A  +  + PFA   ERK+R K+T  +F
Sbjct: 15  MVCLQFGYAGMNLVTKTVLDRGMSHYVLVAYRNAFATAAIAPFALLSERKVRSKMTFPIF 74

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
           + IFLL+LLG  +  NLY+  +K   PTF +AV N +P +T I+A +FR+E V++R  R 
Sbjct: 75  MRIFLLALLGPVIDQNLYYIGLKLTSPTFSSAVSNIVPAITIILATLFRMEKVEMRKVRC 134

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSV--HENWLKGSILTVASCILW 178
           + K++GTL ++VG +++ FYKGP +   +    HL   S     ++LK ++  + + + W
Sbjct: 135 LVKVMGTLVTVVGSILMIFYKGPFINFFRS---HLTAASSPPTADYLKAAVFLLLASLSW 191

Query: 179 SSFYIMQVS 187
           +SF+++Q +
Sbjct: 192 ASFFVLQAA 200

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana GN=At1g09380 PE=2 SV=1

 Score =  131 bits (329), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/200 (33%), Positives = 114/200 (57%), Gaps = 10/200 (5%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           M+L+QI  A +   ++ +   G+ P I V YR    ++  FP A+FLERK RPK+TL + 
Sbjct: 12  MVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKTRPKITLRIL 71

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
           +++F  S+ G +    LYF  ++   PT   A+ N +P +TF++A +FR E V ++   G
Sbjct: 72  VQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAIFRQETVGIKKASG 131

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHL---------GTNSVHENWLKGSILT 171
            AK++GTL  ++G MV++FY G  +  +  + IH          G++S H N+  G  L 
Sbjct: 132 QAKVIGTLVCVIGAMVLSFYHGHTI-GIGESKIHWAYAENITKHGSSSGHSNFFLGPFLI 190

Query: 172 VASCILWSSFYIMQVSNPST 191
           +A+ + W++++I+Q     T
Sbjct: 191 MAAAVSWAAWFIIQTKMSET 210

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
255583214	368	Auxin-induced protein 5NG4, putative [Ri	0.898	0.505	0.596	4e-63
297744123	364	unnamed protein product [Vitis vinifera]	0.893	0.508	0.610	2e-62
357114030	367	PREDICTED: auxin-induced protein 5NG4-li	0.908	0.512	0.597	1e-61
255576820	370	Auxin-induced protein 5NG4, putative [Ri	0.893	0.5	0.598	3e-61
225433049	368	PREDICTED: auxin-induced protein 5NG4 [V	0.893	0.502	0.639	1e-60
356535430	354	PREDICTED: auxin-induced protein 5NG4 [G	0.908	0.531	0.568	1e-59
242036909	373	hypothetical protein SORBIDRAFT_01g04696	0.908	0.504	0.567	3e-59
326522246	381	predicted protein [Hordeum vulgare subsp	0.908	0.493	0.547	7e-59
356576464	210	PREDICTED: auxin-induced protein 5NG4-li	0.898	0.885	0.574	1e-58
226498030	377	uncharacterized protein LOC100274152 [Ze	0.908	0.498	0.536	3e-58

>gi|255583214|ref|XP_002532372.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223527928|gb|EEF30015.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 111/186 (59%), Positives = 152/186 (81%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           +I +Q   + +YF+TE +F  GLNPH+YVTYR+  G L++ PFA FLERK+RPK+TL +F
Sbjct: 20  LIFVQSSFSLLYFVTEAAFKHGLNPHVYVTYRYVLGCLLVLPFACFLERKVRPKMTLLLF 79

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
           LEIF+LSLLG SL LN+YFAS+KY +PTF+T++ N IP MTF+ AV+ RLE+++VR+PRG
Sbjct: 80  LEIFVLSLLGASLTLNMYFASLKYTNPTFVTSMTNAIPSMTFLFAVILRLEVINVRTPRG 139

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSS 180
           +AKI+GTL SL G +V+AFYKGP + SL+GAPIH+ ++ V +NW+KGS L +ASCI WS 
Sbjct: 140 VAKIVGTLMSLAGALVLAFYKGPKMKSLQGAPIHIRSSHVQQNWMKGSFLLLASCITWSL 199

Query: 181 FYIMQV 186
           ++I+QV
Sbjct: 200 WFILQV 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744123|emb|CBI37093.3| unnamed protein product [Vitis vinifera]

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/185 (61%), Positives = 145/185 (78%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           M+L+  C   +YF  E +FN GLNPH+ VTYRH  G L+MFPFAY LERK+RPKLTLA+F
Sbjct: 27  MVLVHTCYTILYFTAEAAFNHGLNPHVMVTYRHFIGGLVMFPFAYVLERKVRPKLTLALF 86

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
            EIF+LSL G+ L LN+YFAS+ Y  PTF+ ++VNTI  +TF++A++ RLE +D+R+PRG
Sbjct: 87  AEIFVLSLFGIGLTLNMYFASLTYTSPTFLASMVNTIASLTFVMAIILRLEHLDIRNPRG 146

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSS 180
           +AKILGTL SLVGVM++   KGP + +L    IH+G N++HENW KGSILTVASCI WS 
Sbjct: 147 LAKILGTLFSLVGVMIMTSCKGPVIRNLSSPLIHIGRNNMHENWTKGSILTVASCITWSI 206

Query: 181 FYIMQ 185
           +YIMQ
Sbjct: 207 WYIMQ 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357114030|ref|XP_003558804.1| PREDICTED: auxin-induced protein 5NG4-like [Brachypodium distachyon]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 151/189 (79%), Gaps = 1/189 (0%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           MIL+Q+    +YF+TED+FN+GLNP++YVTYRH   +L++ PFAYF E+K+RPK+TL +F
Sbjct: 15  MILVQLSYTLMYFVTEDAFNRGLNPYVYVTYRHLLVALLLCPFAYFHEKKLRPKMTLMLF 74

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
           LEIF+LSLLGVSL LN+YFAS+KY  PTF+TA+ NT+  +TF IA+V R+EIVDV+SPRG
Sbjct: 75  LEIFVLSLLGVSLTLNMYFASLKYTSPTFVTAMANTVASITFAIAIVLRMEIVDVKSPRG 134

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHL-GTNSVHENWLKGSILTVASCILWS 179
           +AK+ GT  S  GV  + FYKG A+ S   APIH+ G+N+VH +W+KGS+L VASC+ WS
Sbjct: 135 LAKVAGTAVSFAGVTTMTFYKGAAIASPWKAPIHIHGSNAVHGSWVKGSLLAVASCVCWS 194

Query: 180 SFYIMQVSN 188
            +YIMQ  +
Sbjct: 195 IWYIMQAGS 203

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576820|ref|XP_002529296.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223531220|gb|EEF33065.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 112/187 (59%), Positives = 144/187 (77%), Gaps = 2/187 (1%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           M   Q+    +Y +TE SFN+G+NPH+Y+TYRH   S++M P AYF ERK RPK+TLA+F
Sbjct: 21  MFFAQVGYTFLYLITEASFNRGMNPHVYITYRHVVASVVMLPIAYFAERKQRPKMTLALF 80

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
           +EIF+LSLLGVSL LN+Y+AS++Y  PTF+ +VVNTI  + F+IA+  RLE +D+R+PRG
Sbjct: 81  VEIFILSLLGVSLTLNMYYASLRYTSPTFVASVVNTIAALAFVIAIALRLESLDLRNPRG 140

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTN--SVHENWLKGSILTVASCILW 178
           +AK+LGTL SL GVM +  YKGP + +L   PIH+  N  S HENWLKGSILTVASCI W
Sbjct: 141 LAKLLGTLVSLAGVMTMTLYKGPKMKNLSVTPIHIEGNTASNHENWLKGSILTVASCITW 200

Query: 179 SSFYIMQ 185
           S +YIMQ
Sbjct: 201 SVWYIMQ 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433049|ref|XP_002280977.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296083618|emb|CBI23607.3| unnamed protein product [Vitis vinifera]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 119/186 (63%), Positives = 149/186 (80%), Gaps = 1/186 (0%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           M L Q     +YF+TE SFN G+NPH+Y+TYRH  G L+ FPFAYFLERK+RPKLTLA+F
Sbjct: 21  MALAQFGYTFLYFITEASFNHGMNPHVYITYRHIVGGLVTFPFAYFLERKVRPKLTLALF 80

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
           +E+F+LSLLGV L+LN+YFAS++Y  PTF+ +VVNTI  +TFIIAVV R+E++D R+PRG
Sbjct: 81  VELFILSLLGVGLSLNMYFASLRYTSPTFIASVVNTIASLTFIIAVVLRMEVLDFRNPRG 140

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHL-GTNSVHENWLKGSILTVASCILWS 179
           IAK+LGTL SL GVM +  YKGP + SL    IH+ G  ++HENWLKGSILTVASC+ WS
Sbjct: 141 IAKVLGTLVSLAGVMTMTLYKGPIMKSLWDPLIHIQGNTTIHENWLKGSILTVASCVTWS 200

Query: 180 SFYIMQ 185
            +YIMQ
Sbjct: 201 IWYIMQ 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535430|ref|XP_003536248.1| PREDICTED: auxin-induced protein 5NG4 [Glycine max]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 108/190 (56%), Positives = 151/190 (79%), Gaps = 2/190 (1%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           M+L+Q+    +YF+TE SFN G++P++YVTYRH   +++MFPFAYFLER  RPKLT A+F
Sbjct: 21  MVLVQVGYTFLYFITEASFNHGMSPYVYVTYRHIVAAVVMFPFAYFLERNARPKLTFALF 80

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
           +EIF+LSLLGVS+ LN+YFAS+KY +PTF+ +++NTI  +TFIIAV  R E++D+R+PRG
Sbjct: 81  MEIFVLSLLGVSVTLNMYFASLKYTNPTFVASMINTIASLTFIIAVALRFEVLDLRNPRG 140

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNS--VHENWLKGSILTVASCILW 178
           IAK++GT+ SL GV+++  YKGP + +L    IH+   S  ++E+WLKGSILTV+SC+ W
Sbjct: 141 IAKVIGTIISLAGVLIMTLYKGPVMRNLWHPLIHIPGKSAAINEDWLKGSILTVSSCVTW 200

Query: 179 SSFYIMQVSN 188
           S +YIMQ S 
Sbjct: 201 SLWYIMQAST 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242036909|ref|XP_002465849.1| hypothetical protein SORBIDRAFT_01g046960 [Sorghum bicolor] gi|241919703|gb|EER92847.1| hypothetical protein SORBIDRAFT_01g046960 [Sorghum bicolor]

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 151/192 (78%), Gaps = 4/192 (2%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           M+L Q+C   +YF+TE  FNQGLNP++Y+TYRH   +++++PFAY+ E+ +RPK+TL +F
Sbjct: 20  MVLAQLCYTLMYFITEAGFNQGLNPYVYITYRHLLVAVLIWPFAYYQEKGLRPKMTLMLF 79

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
           +EIF+LSLLGVSL LN+YFAS+KY  PTF+T+VVNTI  MTF+IA++ R+EIVDV+S RG
Sbjct: 80  MEIFVLSLLGVSLTLNMYFASLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRG 139

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHL---GTNSV-HENWLKGSILTVASCI 176
           +AKI GT+ S  GV  +  YKG A+ SL  +P+H+   G+  V H++W+KGS+L VASCI
Sbjct: 140 LAKIAGTVVSFAGVTTMTLYKGAAITSLWKSPVHIPGSGSGGVGHDSWVKGSVLAVASCI 199

Query: 177 LWSSFYIMQVSN 188
            WS +YIMQ S+
Sbjct: 200 CWSIWYIMQASS 211

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326522246|dbj|BAK07585.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 104/190 (54%), Positives = 149/190 (78%), Gaps = 2/190 (1%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           MI++Q+C   +YF+TE +FN+GLNP++YVTYRH   +++++PFAY+ E+K+RPK+T  +F
Sbjct: 21  MIMVQLCYTLMYFVTEAAFNRGLNPYVYVTYRHLLVAVLLWPFAYYHEKKLRPKMTWMLF 80

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
           LEIF+LSLLGVSL LN+YFAS+KY  PTF+T++VNT+  +TF+IA+  R+EIVD+RS RG
Sbjct: 81  LEIFVLSLLGVSLTLNMYFASLKYTSPTFVTSMVNTVASITFVIAIALRIEIVDLRSARG 140

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHL--GTNSVHENWLKGSILTVASCILW 178
           +AK+ GT  S  GV  +  YKG A+ S   AP+H+  G ++ H+ WLKGS+L VASC+ W
Sbjct: 141 LAKVAGTAVSFAGVTTMTLYKGAAIASPWKAPVHIPGGGDAAHDGWLKGSLLAVASCVCW 200

Query: 179 SSFYIMQVSN 188
           S +YIMQ ++
Sbjct: 201 SVWYIMQATS 210

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576464|ref|XP_003556351.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/188 (57%), Positives = 148/188 (78%), Gaps = 2/188 (1%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           M+++Q+    +YF+TE SFN G++PH+YVTYRH   + MMFPFAYFLER  RPKLT A+F
Sbjct: 21  MVIVQVGYTFLYFITEASFNHGMSPHVYVTYRHILAAAMMFPFAYFLERNARPKLTFALF 80

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
           +EIF+LSLLGVS+ LN+YFAS+ Y +PTF+ ++VNTI  +TFIIAV    E++D+R+PRG
Sbjct: 81  MEIFVLSLLGVSVTLNMYFASLNYTNPTFVASMVNTIASLTFIIAVALGFEVLDLRNPRG 140

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNS--VHENWLKGSILTVASCILW 178
           IAK++GT+ SL GV+++  YKGP + +L    IH+   S  ++E+WLKGSILTV+SC+ W
Sbjct: 141 IAKVIGTMISLAGVLIMTLYKGPVMRNLWHPLIHIPGKSAAINEDWLKGSILTVSSCVTW 200

Query: 179 SSFYIMQV 186
           S +YIMQV
Sbjct: 201 SVWYIMQV 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226498030|ref|NP_001142002.1| uncharacterized protein LOC100274152 [Zea mays] gi|194706752|gb|ACF87460.1| unknown [Zea mays] gi|414864832|tpg|DAA43389.1| TPA: hypothetical protein ZEAMMB73_056334 [Zea mays]

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 104/194 (53%), Positives = 149/194 (76%), Gaps = 6/194 (3%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVF 60
           M+L Q+C   +YF+TE +FNQGLNP++Y+TYRH   +++++PFAY+LE+ +RPK+TL +F
Sbjct: 27  MVLAQLCYTLMYFITEAAFNQGLNPYVYITYRHLLVAVLIWPFAYYLEKGLRPKMTLMLF 86

Query: 61  LEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
           +EIF+LSLLGVSL LN+YF S+KY  PTF+T+VVNTI  MTF+IA++ R+EIVDV+S RG
Sbjct: 87  VEIFVLSLLGVSLTLNMYFTSLKYTSPTFVTSVVNTIASMTFVIAIILRMEIVDVKSLRG 146

Query: 121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNS------VHENWLKGSILTVAS 174
           +AK+ GT+ S  GV  +  YKG A+ SL  +P+ +  +        H++W+KGS+L VAS
Sbjct: 147 VAKVAGTVVSFAGVTTMTLYKGAAITSLWKSPVQIAGSGSGGGGVAHDSWVKGSVLAVAS 206

Query: 175 CILWSSFYIMQVSN 188
           C+ WS +YIMQ S+
Sbjct: 207 CVCWSIWYIMQASS 220

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2132457	373	UMAMIT17 "Usually multiple aci	0.893	0.495	0.369	8.8e-31
TAIR|locus:2194864	370	SIAR1 "Siliques Are Red 1" [Ar	0.893	0.5	0.338	7.1e-29
TAIR|locus:2039792	374	UMAMIT14 "AT2G39510" [Arabidop	0.893	0.494	0.349	1.5e-28
TAIR|locus:2132447	384	UMAMIT20 "Usually multiple aci	0.893	0.481	0.335	1.9e-28
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.884	0.481	0.333	6.4e-28
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.888	0.457	0.345	1.7e-27
TAIR|locus:2201148	389	UMAMIT19 "Usually multiple aci	0.893	0.475	0.318	1.2e-26
TAIR|locus:2102881	364	UMAMIT32 "Usually multiple aci	0.884	0.502	0.352	8.4e-26
TAIR|locus:2012255	374	UMAMIT25 "Usually multiple aci	0.917	0.508	0.31	1.1e-25
TAIR|locus:2049837	336	UMAMIT13 "Usually multiple aci	0.492	0.303	0.407	4.8e-25

TAIR|locus:2132457 UMAMIT17 "Usually multiple acids move in and out Transporters 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 71/192 (36%), Positives = 108/192 (56%)

Query:     1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTXXXX 60
             +I LQ   A +Y +T  SF  G+N  I  TYRH   ++++ PFA  LERKIRPK+T    
Sbjct:    15 IISLQFGYAGMYIITMVSFKHGMNHWILATYRHVVATIVIAPFALILERKIRPKMTWPLF 74

Query:    61 XXXXXXXXXXXXXXXXXYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
                              Y+  MK    T+ +A VN +P +TFI+AV+FR+E V+++  R 
Sbjct:    75 LRILALGFLEPLLDQNLYYIGMKATSATYSSAFVNALPAITFIMAVIFRIETVNLKKTRS 134

Query:   121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGA--PIH---LGTNS--VHENWLKGSILTVA 173
             +AK++GT  ++ G MV+  YKGPA+   K A   +H    GT+S    +NW+ G++  + 
Sbjct:   135 LAKVIGTAITVGGAMVMTLYKGPAIELFKTAHSSLHGGSSGTSSETTDQNWVTGTLAVMG 194

Query:   174 SCILWSSFYIMQ 185
             S   W+ F+I+Q
Sbjct:   195 SITTWAGFFILQ 206

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2194864 SIAR1 "Siliques Are Red 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 64/189 (33%), Positives = 106/189 (56%)

Query:     1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTXXXX 60
             +I LQ   A +Y +T  SF  G++  +  TYRH   +++M PFA   ERKIRPK+T    
Sbjct:    15 IISLQFGYAGMYIITMVSFKHGMDHWVLATYRHVVATVVMAPFALMFERKIRPKMTLAIF 74

Query:    61 XXXXXXXXXXXXXXXXXYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
                              Y+  +K    ++ +A  N +P +TFI+A++FRLE V+ R    
Sbjct:    75 WRLLALGILEPLMDQNLYYIGLKNTSASYTSAFTNALPAVTFILALIFRLETVNFRKVHS 134

Query:   121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGA--PIHLGTNSVH--ENWLKGSILTVASCI 176
             +AK++GT+ ++ G M++  YKGPA+  +K A    H G++S    ++W+ G+I  + S  
Sbjct:   135 VAKVVGTVITVGGAMIMTLYKGPAIEIVKAAHNSFHGGSSSTPTGQHWVLGTIAIMGSIS 194

Query:   177 LWSSFYIMQ 185
              W++F+I+Q
Sbjct:   195 TWAAFFILQ 203

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006865 "amino acid transport" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0032973 "amino acid export" evidence=IDA

GO:0034639 "L-amino acid efflux transmembrane transporter activity" evidence=IDA

GO:0043090 "amino acid import" evidence=IDA

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 66/189 (34%), Positives = 102/189 (53%)

Query:     1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTXXXX 60
             ++ LQ   A +  + + + NQG++PH+  +YRH   ++ + PFAYFL+RKIRPK+T    
Sbjct:    12 VVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIRPKMTLSIF 71

Query:    61 XXXXXXXXXXXXXXXXXYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
                              Y+  MKY   TF  A+ N +P   FI+A +FRLE V+V+    
Sbjct:    72 FKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNVKKIHS 131

Query:   121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAP--IHLGTNS--VHENWLKGSILTVASCI 176
              AKILGT+ ++ G M++   KGP +P     P  IH  +++  V ++  KG+ L    CI
Sbjct:   132 QAKILGTIVTVGGAMLMTVVKGPLIPLPWANPHDIHQDSSNTGVKQDLTKGASLIAIGCI 191

Query:   177 LWSSFYIMQ 185
              W+ F  +Q
Sbjct:   192 CWAGFINLQ 200

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 64/191 (33%), Positives = 98/191 (51%)

Query:     1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTXXXX 60
             MI LQ   A  Y +   + NQG N ++ + YR+   +L++ PFA   ERK+RPK+T    
Sbjct:    17 MIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAALVLAPFALIFERKVRPKMTLSVL 76

Query:    61 XXXXXXXXXXXXXXXXXYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
                               +  M     T+ +A++N +P +TFIIA + R+E V++   R 
Sbjct:    77 WKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKVNIAEVRS 136

Query:   121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPI------HLGTNSVHENWLKGSILTVAS 174
              AKI+GTL  L G +V+  YKGP +P     P       H   +  H NW+ G++L +  
Sbjct:   137 KAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGTLLILLG 196

Query:   175 CILWSSFYIMQ 185
             C+ WS FY++Q
Sbjct:   197 CVAWSGFYVLQ 207

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 63/189 (33%), Positives = 107/189 (56%)

Query:     1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTXXXX 60
             M++LQ+ +A +  L++   N+G++ ++ V YRHA  +++M PFA++ ++K+RPK+T    
Sbjct:    19 MVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKKVRPKMTLMIF 78

Query:    61 XXXXXXXXXXXXXXXXXYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
                              Y+  MKY   TF TA+ N +P +TF++A +F LE V +R  R 
Sbjct:    79 FKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVKLRCIRS 138

Query:   121 IAKILGTLASLVGVMVIAFYKGPAVPSL--KGAPIH--LGTNSVHENWLKGSILTVASCI 176
               K++GTLA++ G M++   KGP +     KG   H   GT+ +H   +KG++L    C 
Sbjct:   139 TGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTD-IHSA-IKGAVLVTIGCF 196

Query:   177 LWSSFYIMQ 185
              ++ F I+Q
Sbjct:   197 SYACFMILQ 205

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 68/197 (34%), Positives = 108/197 (54%)

Query:     1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTXXXX 60
             MI LQ   A +  +T+ S N G++ ++ V YRHA  + ++ PFA+F ERK +PK+T    
Sbjct:    22 MISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKITFSIF 81

Query:    61 XXXXXXXXXXXXXXXXXYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
                              Y+  +KY  PTF  A+ N +P MTFI+AV+FR+E++D++    
Sbjct:    82 MQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKKLWC 141

Query:   121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHEN------------WLKGS 168
              AKI GT+ ++ G M++  YKGP V       +H+  +S H N            +LKGS
Sbjct:   142 QAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSS-HANTTSSKNSSSDKEFLKGS 200

Query:   169 ILTVASCILWSSFYIMQ 185
             IL + + + W+S +++Q
Sbjct:   201 ILLIFATLAWASLFVLQ 217

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2201148 UMAMIT19 "Usually multiple acids move in and out Transporters 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 63/198 (31%), Positives = 105/198 (53%)

Query:     1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTXXXX 60
             MI +Q   A +Y +T  S   G+N ++   YRHA  + ++ PFA F ERKIRPK+T    
Sbjct:    15 MISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERKIRPKMTFRIF 74

Query:    61 XXXXXXXXXXXXXXXXXYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
                              Y+  M Y   TF +A  N +P +TF++A++FRLE V+ +  R 
Sbjct:    75 LQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFRLESVNFKKVRS 134

Query:   121 IAKILGTLASLVGVMVIAFYKGPAVPSLK----------GAP-IH--LGTNSVHENWLKG 167
             IAK++GT+ ++ G +++  YKGP V  ++          GA   H   G  ++ ++W+ G
Sbjct:   135 IAKVVGTVITVSGALLMTLYKGPIVDFIRFGGGGGGGSDGAGGSHGGAGAAAMDKHWIPG 194

Query:   168 SILTVASCILWSSFYIMQ 185
             +++ +     W+ F+I+Q
Sbjct:   195 TLMLLGRTFGWAGFFILQ 212

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2102881 UMAMIT32 "Usually multiple acids move in and out Transporters 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 67/190 (35%), Positives = 102/190 (53%)

Query:     1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTXXXX 60
             MI + + V +V F  +   ++GLN  +  TYR A G+L + PFA FLER  RPKLT    
Sbjct:    17 MINIGLSVVNVMF--KKMIDEGLNRMVATTYRLAVGTLFLIPFAIFLERHNRPKLTGRIL 74

Query:    61 XXXXXXXXXXXXXXXXXYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
                              +   ++Y   TF  A  N +P +TF +A+VFR E ++++S  G
Sbjct:    75 CSLFFSALLGTSLVQYFFLIGLEYTSSTFSLAFSNMVPSVTFALALVFRQETLNIKSNVG 134

Query:   121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPI--HLGTNS---VHENWLKGSILTVASC 175
              AK+LGT+  + G +V+  YKG A+       +  H  T+S   + + W  GSI+ V S 
Sbjct:   135 RAKLLGTMICICGALVLTLYKGTALSREHSTHMETHTRTDSTGAMTQKWAMGSIMLVISI 194

Query:   176 ILWSSFYIMQ 185
             I+WSS++I+Q
Sbjct:   195 IIWSSWFIVQ 204

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2012255 UMAMIT25 "Usually multiple acids move in and out Transporters 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 62/200 (31%), Positives = 103/200 (51%)

Query:     1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTXXXX 60
             M+L+QI  A +   ++ +   G+ P I V YR    ++  FP A+FLERK RPK+T    
Sbjct:    12 MVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKTRPKITLRIL 71

Query:    61 XXXXXXXXXXXXXXXXXYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRG 120
                              YF  ++   PT   A+ N +P +TF++A +FR E V ++   G
Sbjct:    72 VQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAIFRQETVGIKKASG 131

Query:   121 IAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHL---------GTNSVHENWLKGSILT 171
              AK++GTL  ++G MV++FY G  +  +  + IH          G++S H N+  G  L 
Sbjct:   132 QAKVIGTLVCVIGAMVLSFYHGHTI-GIGESKIHWAYAENITKHGSSSGHSNFFLGPFLI 190

Query:   172 VASCILWSSFYIMQVSNPST 191
             +A+ + W++++I+Q     T
Sbjct:   191 MAAAVSWAAWFIIQTKMSET 210

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2049837 UMAMIT13 "Usually multiple acids move in and out Transporters 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.8e-25, Sum P(2) = 4.8e-25
 Identities = 44/108 (40%), Positives = 69/108 (63%)

Query:    82 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK 141
             MKY   TF  A+ NT+P +TFI+A++FRLE V  +S R  AK++GT+ ++ G+MV+   K
Sbjct:    73 MKYTTATFAIALYNTLPAVTFILALIFRLESVKFQSIRSAAKVVGTVTTVGGIMVMTLVK 132

Query:   142 GPAVPSL--KG--APIHLGTNSVHENWLKGSILTVASCILWSSFYIMQ 185
             GPA+     KG  A   +GT+ +H + +KG++L    C  ++ F I+Q
Sbjct:   133 GPALDLFWTKGPSAQNTVGTD-IHSS-IKGAVLVTIGCFSYACFMILQ 178

GO:0016020 "membrane" evidence=IEA

GO:0016556 "mRNA modification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007505001 SubName- Full=Chromosome chr7 scaffold_192, whole genome shotgun sequence; (347 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	7e-21
pfam00892	126	pfam00892, EamA, EamA-like transporter family	1e-04

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score = 88.5 bits (219), Expect = 7e-21
 Identities = 58/193 (30%), Positives = 105/193 (54%), Gaps = 10/193 (5%)

Query: 1   MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLER-KIRPKLTLAV 59
           M+  +  V  +  L + + ++GLN + ++ Y +   SL++ P  +F  R +  P L++++
Sbjct: 18  MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSI 77

Query: 60  FLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPR 119
             +I LL  LG    +  Y   ++Y +PT  +A+ N  P +TFI+A++FR+E V  +   
Sbjct: 78  LSKIGLLGFLGSMYVITGYIG-IEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERS 136

Query: 120 GIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLG-------TNSVHENWLKGSILTV 172
            +AK++GT+ SL+G +V+ FY GP V  +  +P +L         +S + +WL G  L  
Sbjct: 137 SVAKVMGTILSLIGALVVIFYHGPRV-FVASSPPYLNFRQLSPPLSSSNSDWLIGGALLT 195

Query: 173 ASCILWSSFYIMQ 185
              I  S  +I+Q
Sbjct: 196 IQGIFVSVSFILQ 208

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 6/103 (5%)

Query: 37  SLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNT 96
           + ++     FL RK    L+L   L +  L L G +L   LYF ++KYV  +  + + + 
Sbjct: 30  AGILLILLLFLLRKPFALLSLKAILALLYLGLFGTALGYLLYFYALKYVSASNASVITSL 89

Query: 97  IPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF 139
            P  T I++V+   E + ++      ++LG +  L+GV++I  
Sbjct: 90  SPVFTLILSVLLLGEKLTLK------QLLGIVLILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
PLN00411	358	nodulin MtN21 family protein; Provisional	99.96
PRK11272	292	putative DMT superfamily transporter inner membran	99.89
PRK11689	295	aromatic amino acid exporter; Provisional	99.87
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.87
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.86
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.86
PRK15430	296	putative chloramphenical resistance permease RarD;	99.82
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.81
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.77
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.75
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.71
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.69
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.61
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.59
COG2510	140	Predicted membrane protein [Function unknown]	99.47
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.4
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.36
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.34
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.28
PRK11272	292	putative DMT superfamily transporter inner membran	99.27
PLN00411	358	nodulin MtN21 family protein; Provisional	99.15
PRK11689	295	aromatic amino acid exporter; Provisional	99.12
KOG2765	416	consensus Predicted membrane protein [Function unk	99.09
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.06
COG2962	293	RarD Predicted permeases [General function predict	99.04
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.03
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.97
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.92
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.87
KOG4510	346	consensus Permease of the drug/metabolite transpor	98.84
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.74
PRK15430	296	putative chloramphenical resistance permease RarD;	98.73
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.71
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.67
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.58
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.58
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.51
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.33
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.27
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.07
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.98
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.92
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.79
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.78
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.71
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.66
KOG2766	336	consensus Predicted membrane protein [Function unk	97.63
KOG1443	349	consensus Predicted integral membrane protein [Fun	97.35
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.25
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.19
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.19
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.16
PRK13499	345	rhamnose-proton symporter; Provisional	97.16
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.11
COG2076	106	EmrE Membrane transporters of cations and cationic	96.99
COG2962	293	RarD Predicted permeases [General function predict	96.97
PRK11431	105	multidrug efflux system protein; Provisional	96.87
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.78
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.64
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.6
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	96.4
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.25
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.13
KOG4510	346	consensus Permease of the drug/metabolite transpor	95.76
KOG1580	337	consensus UDP-galactose transporter related protei	95.31
KOG2765	416	consensus Predicted membrane protein [Function unk	94.71
KOG1580	337	consensus UDP-galactose transporter related protei	94.65
PRK13499	345	rhamnose-proton symporter; Provisional	94.46
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	94.16
KOG2922	335	consensus Uncharacterized conserved protein [Funct	92.33
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	91.86
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	91.79
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	91.26
KOG1581	327	consensus UDP-galactose transporter related protei	91.09
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	90.77
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	90.75
KOG1581	327	consensus UDP-galactose transporter related protei	90.44
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	86.39
KOG4831	125	consensus Unnamed protein [Function unknown]	80.91

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.96  E-value=3e-28  Score=210.67  Aligned_cols=195  Identities=30%  Similarity=0.497  Sum_probs=157.5

Q ss_pred             ChhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKI-RPKLTLAVFLEIFLLSLLGVSLALNLYF   79 (207)
Q Consensus         1 ~~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~gl~g~~~~~~~~~   79 (207)
                      |+.+|+++++..++.|.+++.|++|+.+.++|+.+|++++.|+++.++|++ +++.+++++..+.++|++| +.++.+++
T Consensus        18 ~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g-~~~~~~~~   96 (358)
T PLN00411         18 MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG-SMYVITGY   96 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH-HHHHHHHH
Confidence            789999999999999999999999999999999999999999987654422 2344678889999999999 67888999


Q ss_pred             HHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCC-----CCcc
Q 028591           80 ASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKG-----APIH  154 (207)
Q Consensus        80 ~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~-----~~~~  154 (207)
                      .|++|++|++|+++.++.|+++++++++++.|+.+.+++.+++|++|++++++|+.++...+++.....++     .+.+
T Consensus        97 ~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~  176 (358)
T PLN00411         97 IGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQL  176 (358)
T ss_pred             HHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccccccccc
Confidence            99999999999999999999999999999777777777778889999999999999877544432100000     0000


Q ss_pred             C-CCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcCCce
Q 028591          155 L-GTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSFRFF  196 (207)
Q Consensus       155 ~-~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~~~  196 (207)
                      + .......++..|+++.++|+++||.|++++|+..++||+..
T Consensus       177 ~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~  219 (358)
T PLN00411        177 SPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAF  219 (358)
T ss_pred             ccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHh
Confidence            0 00111234567999999999999999999999999998753

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.89  E-value=1.6e-21  Score=164.59  Aligned_cols=163  Identities=18%  Similarity=0.220  Sum_probs=136.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS   81 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g   81 (207)
                      +++.++||++++++|...+ ++||..++++|+.++++++.++... +|++  ..++|++.+....|.++...++.+++.+
T Consensus        14 ~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~-~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~   89 (292)
T PRK11272         14 FALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLL-RGHP--LPTLRQWLNAALIGLLLLAVGNGMVTVA   89 (292)
T ss_pred             HHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHH-hCCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999887 6999999999999999999887643 2222  2357888888999998878888999999


Q ss_pred             h-hccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCC
Q 028591           82 M-KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSV  160 (207)
Q Consensus        82 l-~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~  160 (207)
                      . ++++++.++++.++.|+++.+++.+ +|||++++      +++|++++++|+.++.. ++ .               .
T Consensus        90 ~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~-~~-~---------------~  145 (292)
T PRK11272         90 EHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNS-GG-N---------------L  145 (292)
T ss_pred             HHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhc-Cc-c---------------c
Confidence            9 9999999999999999999999986 69999765      59999999999988752 11 0               0


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028591          161 HENWLKGSILTVASCILWSSFYIMQVSNPSTSF  193 (207)
Q Consensus       161 ~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~  193 (207)
                       +....|+++.++++++||.|++..||..++++
T Consensus       146 -~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~~  177 (292)
T PRK11272        146 -SGNPWGAILILIASASWAFGSVWSSRLPLPVG  177 (292)
T ss_pred             -ccchHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence             11247999999999999999999999876554

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.87  E-value=4.1e-21  Score=162.33  Aligned_cols=171  Identities=13%  Similarity=0.060  Sum_probs=128.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS   81 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g   81 (207)
                      +++.++||++++..|.+++ ++||+.+.++|+.+|++++.++.   +++   +.++ +.++..+.+.++...++.+++.+
T Consensus        10 l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~~---~~~---~~~~-~~~~~~~~~~l~~~~~~~~~~~a   81 (295)
T PRK11689         10 LIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLTV---GFP---RLRQ-FPKRYLLAGGLLFVSYEICLALS   81 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHHc---ccc---cccc-ccHHHHHHHhHHHHHHHHHHHHH
Confidence            5688999999999999887 59999999999999999988752   111   1111 12234455666777888888888


Q ss_pred             hhc----cChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCC
Q 028591           82 MKY----VHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGT  157 (207)
Q Consensus        82 l~~----t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~  157 (207)
                      +++    +++++++++.++.|+++.+++++++|||++++      +++|++++++|++++.. +++..+  .++     .
T Consensus        82 ~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~-~~~~~~--~~~-----~  147 (295)
T PRK11689         82 LGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLG-GDNGLS--LAE-----L  147 (295)
T ss_pred             HHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheec-CCccch--hhh-----h
Confidence            764    57788999999999999999999999999764      69999999999988752 111000  000     0


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcCC
Q 028591          158 NSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSFR  194 (207)
Q Consensus       158 ~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~  194 (207)
                      ..+..+...|+++.++|++|||.|+++.||..+++++
T Consensus       148 ~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~  184 (295)
T PRK11689        148 INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKNG  184 (295)
T ss_pred             hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Confidence            0011122469999999999999999999999887764

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.87  E-value=6.8e-21  Score=161.25  Aligned_cols=161  Identities=16%  Similarity=0.216  Sum_probs=127.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS   81 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g   81 (207)
                      +.++++||.+++++|.+++ ++||..+.++|+.++++.+.++.  + ++   +.++   +.....|+++...++.+++.+
T Consensus        10 l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~-~~---~~~~---~~~~~~g~~~~~~~~~~~~~~   79 (299)
T PRK11453         10 LLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--A-RP---KVPL---NLLLGYGLTISFGQFAFLFCA   79 (299)
T ss_pred             HHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--c-CC---CCch---HHHHHHHHHHHHHHHHHHHHH
Confidence            5688999999999999987 59999999999999887776643  1 11   1222   234556776666777788899


Q ss_pred             hhc-cChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCC
Q 028591           82 MKY-VHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSV  160 (207)
Q Consensus        82 l~~-t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~  160 (207)
                      ++| .++++++++.++.|+++.+++++++|||++.+      +++|++++++|+.++.. ++.               +.
T Consensus        80 ~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~~~---------------~~  137 (299)
T PRK11453         80 INFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-DSL---------------NG  137 (299)
T ss_pred             HHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-ccC---------------CC
Confidence            998 58899999999999999999999999999765      59999999999988752 110               01


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhccCCcCC
Q 028591          161 HENWLKGSILTVASCILWSSFYIMQVSNPSTSFR  194 (207)
Q Consensus       161 ~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~  194 (207)
                      .+....||++.++++++|+.|++++||..++++.
T Consensus       138 ~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~  171 (299)
T PRK11453        138 QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTR  171 (299)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence            1112469999999999999999999998877654

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.86  E-value=8.9e-21  Score=156.60  Aligned_cols=156  Identities=15%  Similarity=0.143  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Q 028591            8 VASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHP   87 (207)
Q Consensus         8 wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a   87 (207)
                      ||.+++..|..++++.||....+.|++.+.+++.++...  +     .+++++.+....|.++..+++.+++.|++|+++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            899999999998877999999999999998888876432  2     245677788999999999999999999999999


Q ss_pred             hhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHH
Q 028591           88 TFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKG  167 (207)
Q Consensus        88 ~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G  167 (207)
                      ++++++.++.|+++.+++.+++|||++++      +++|+.++++|+.++.. +++                 .+....|
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~~-----------------~~~~~~G  129 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DGN-----------------LSINPAG  129 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CCc-----------------ccccHHH
Confidence            99999999999999999999999999765      69999999999988752 211                 1123579


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCcCC
Q 028591          168 SILTVASCILWSSFYIMQVSNPSTSFR  194 (207)
Q Consensus       168 ~ll~l~aa~~~a~y~v~~k~~~~~~~~  194 (207)
                      +++.++++++|+.|.++.|+..+++++
T Consensus       130 ~~~~l~a~~~~a~~~~~~k~~~~~~~~  156 (260)
T TIGR00950       130 LLLGLGSGISFALGTVLYKRLVKKEGP  156 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhcCCc
Confidence            999999999999999999999988763

>TIGR00688 rarD rarD protein

Probab=99.86  E-value=1.9e-20  Score=154.98  Aligned_cols=159  Identities=13%  Similarity=0.161  Sum_probs=124.0

Q ss_pred             ChhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc----C-CCCCHHH-HHHHHHHHHHHHHHH
Q 028591            1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKI----R-PKLTLAV-FLEIFLLSLLGVSLA   74 (207)
Q Consensus         1 ~~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~----~-~~~~~~~-~~~~~~~gl~g~~~~   74 (207)
                      ++++.++||.+.+++|. ++ ++||.+++++|++++++++.++...+++++    + ++.++++ +......|++ ...+
T Consensus         7 ~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~   83 (256)
T TIGR00688         7 SLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL-IGFN   83 (256)
T ss_pred             HHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH-HHHH
Confidence            46788999999999998 45 599999999999999988877654332211    1 1122232 3345555655 5688


Q ss_pred             HHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCcc
Q 028591           75 LNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIH  154 (207)
Q Consensus        75 ~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~  154 (207)
                      +.+++.+++++++++|+++.++.|+++++++++++|||++++      +++|++++++|+.++...++            
T Consensus        84 ~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~------------  145 (256)
T TIGR00688        84 WWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG------------  145 (256)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC------------
Confidence            999999999999999999999999999999999999999765      69999999999988752111            


Q ss_pred             CCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 028591          155 LGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPST  191 (207)
Q Consensus       155 ~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~  191 (207)
                             +.    .++.+++++||+.|.+..|+..++
T Consensus       146 -------~~----~~~~l~aa~~~a~~~i~~~~~~~~  171 (256)
T TIGR00688       146 -------SL----PWEALVLAFSFTAYGLIRKALKNT  171 (256)
T ss_pred             -------Cc----hHHHHHHHHHHHHHHHHHhhcCCC
Confidence                   11    135688999999999999998654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.82  E-value=3.1e-19  Score=150.92  Aligned_cols=157  Identities=10%  Similarity=0.034  Sum_probs=124.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccC---CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIR---PKLTLAVFLEIFLLSLLGVSLALNLY   78 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~gl~g~~~~~~~~   78 (207)
                      +++.++||.++++.|.. . ++||.++.++|++++.+++.++...+++++.   ...+++++. ....+.++...++.++
T Consensus        14 l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   90 (296)
T PRK15430         14 LAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVSAVLIGGNWLLF   90 (296)
T ss_pred             HHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHHHHHHHHHHHHH
Confidence            57889999999999975 4 5999999999999999888777544321110   011344443 3447777788999999


Q ss_pred             HHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCC
Q 028591           79 FASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTN  158 (207)
Q Consensus        79 ~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~  158 (207)
                      ++|++++++++++++.++.|+++.+++++++|||++++      +++|++++++|+.++....+                
T Consensus        91 ~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~----------------  148 (296)
T PRK15430         91 IWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG----------------  148 (296)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC----------------
Confidence            99999999999999999999999999999999999765      69999999999988752111                


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHhhhccC
Q 028591          159 SVHENWLKGSILTVASCILWSSFYIMQVSNPS  190 (207)
Q Consensus       159 ~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~  190 (207)
                         +.    +++.++++++||.|++..|+..+
T Consensus       149 ---~~----~~~~l~aa~~~a~~~i~~r~~~~  173 (296)
T PRK15430        149 ---SL----PIIALGLAFSFAFYGLVRKKIAV  173 (296)
T ss_pred             ---Cc----cHHHHHHHHHHHHHHHHHHhcCC
Confidence               01    24578899999999999999754

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.81  E-value=2.1e-18  Score=146.10  Aligned_cols=162  Identities=15%  Similarity=0.113  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhh
Q 028591           10 SVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTF   89 (207)
Q Consensus        10 ~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~   89 (207)
                      +..+.-|.++++--+|..+++.|+.++.+.+.+. +....+++++.+++|+++++.+|+++ +.++.+.+.+++|+++++
T Consensus        16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~   93 (302)
T TIGR00817        16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSF   93 (302)
T ss_pred             HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHH
Confidence            4446779888754679999999999987776554 21112223456789999999999996 778899999999999999


Q ss_pred             HHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHH
Q 028591           90 MTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSI  169 (207)
Q Consensus        90 a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~l  169 (207)
                      ++++.++.|+++.+++++++|||++++      +++|++++++|+.+..  .+                +.+.+ ..|++
T Consensus        94 ~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~~----------------~~~~~-~~G~~  148 (302)
T TIGR00817        94 THTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--DT----------------ELSFN-WAGFL  148 (302)
T ss_pred             HHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--CC----------------ccccc-HHHHH
Confidence            999999999999999999999999754      6999999999997643  11                01112 46999


Q ss_pred             HHHHHHHHHHHHHHHhhhccC--CcCCceee
Q 028591          170 LTVASCILWSSFYIMQVSNPS--TSFRFFSF  198 (207)
Q Consensus       170 l~l~aa~~~a~y~v~~k~~~~--~~~~~~~~  198 (207)
                      +.++|+++|+.|+++.||..+  ++++...+
T Consensus       149 ~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~  179 (302)
T TIGR00817       149 SAMISNITFVSRNIFSKKAMTIKSLDKTNLY  179 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCcccHH
Confidence            999999999999999999988  66654433

specificities overlap.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.77  E-value=1.3e-17  Score=140.85  Aligned_cols=162  Identities=13%  Similarity=0.144  Sum_probs=127.2

Q ss_pred             ChhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFA   80 (207)
Q Consensus         1 ~~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~   80 (207)
                      |+++.++|+++.+++|.+.++ +||..+.++|+++|++++.++..  +++.  +.++|+++.....|++. ...+.+++.
T Consensus        17 ~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~--~~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~   90 (293)
T PRK10532         17 LLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFK--PWRL--RFAKEQRLPLLFYGVSL-GGMNYLFYL   90 (293)
T ss_pred             HHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHh--HHhc--cCCHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            467899999999999999875 99999999999999999887642  2221  34678888888888874 566788999


Q ss_pred             HhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCC
Q 028591           81 SMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSV  160 (207)
Q Consensus        81 gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~  160 (207)
                      +++|++++.++++.++.|+++.+++.    |+..        +..++.++++|+.++.. .+.+               .
T Consensus        91 al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~li~~-~~~~---------------~  142 (293)
T PRK10532         91 SIQTVPLGIAVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLWFLLP-LGQD---------------V  142 (293)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHheeee-cCCC---------------c
Confidence            99999999999999999999987763    4321        35677889999987652 2211               0


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhccCCcCCce
Q 028591          161 HENWLKGSILTVASCILWSSFYIMQVSNPSTSFRFF  196 (207)
Q Consensus       161 ~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~~~  196 (207)
                      +.....|+++.++++++||.|++..|+..+++++..
T Consensus       143 ~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~  178 (293)
T PRK10532        143 SHVDLTGAALALGAGACWAIYILSGQRAGAEHGPAT  178 (293)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Confidence            111247999999999999999999999988887533

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.75  E-value=2.1e-17  Score=138.74  Aligned_cols=165  Identities=12%  Similarity=0.127  Sum_probs=126.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLE-RKIRPKLTLAVFLEIFLLSLLGVSLALNLYFA   80 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~   80 (207)
                      +.++++|+...+..|...++ -++  ..+++...+++++.|+...+. ++.++.. +++++.....+.++...++.+++.
T Consensus         7 ~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   82 (281)
T TIGR03340         7 VFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRL-PATFWLLLAISAVANMVYFLGLAQ   82 (281)
T ss_pred             HHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCc-chhhHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999976554 344  357888888888888765431 2222222 344455566666677899999999


Q ss_pred             HhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCC
Q 028591           81 SMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSV  160 (207)
Q Consensus        81 gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~  160 (207)
                      |++++++++++.+.++.|+++.+++++++|||++++      +++|+.+++.|+.++.. ++.                .
T Consensus        83 a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~-~~~----------------~  139 (281)
T TIGR03340        83 AYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL-SRF----------------A  139 (281)
T ss_pred             HHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc-ccc----------------c
Confidence            999999999999999999999999999999999764      59999999999988752 111                0


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhccCCcCC
Q 028591          161 HENWLKGSILTVASCILWSSFYIMQVSNPSTSFR  194 (207)
Q Consensus       161 ~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~  194 (207)
                      ..+ ..|+.+.++++++|+.|++..|+..++.++
T Consensus       140 ~~~-~~g~~~~l~aal~~a~~~i~~k~~~~~~~~  172 (281)
T TIGR03340       140 QHR-RKAYAWALAAALGTAIYSLSDKAAALGVPA  172 (281)
T ss_pred             ccc-hhHHHHHHHHHHHHHHhhhhccccccchhc
Confidence            111 358889999999999999999887666654

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.71  E-value=4.2e-16  Score=134.83  Aligned_cols=156  Identities=13%  Similarity=0.092  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 028591           10 SVYFLTEDSFNQGLN-PHIYVTYRHAAGSLMMFPFAYFLERKIRPKL--TLAVFLEIFLLSLLGVSLALNLYFASMKYVH   86 (207)
Q Consensus        10 ~~~i~~K~~l~~~~~-p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~   86 (207)
                      ...+..|.++++ +| |+.++.+|++++.+++..+... ..++.++.  .+++++.++.+|+++...+. ..+.++++++
T Consensus        63 ~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~llp~gl~~~~~~~-~~~~sl~~~s  139 (350)
T PTZ00343         63 LYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWAT-GFRKIPRIKSLKLFLKNFLPQGLCHLFVHF-GAVISMGLGA  139 (350)
T ss_pred             HHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcc
Confidence            445678888875 99 9999999999998776544221 12222233  35688899999999977644 4679999999


Q ss_pred             hhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHH
Q 028591           87 PTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLK  166 (207)
Q Consensus        87 a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  166 (207)
                      ++.+.++.++.|+++++++++++|||++++      +++|+++++.|+.+.+.  + +               .+.+ ..
T Consensus       140 vs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~-~---------------~~~~-~~  194 (350)
T PTZ00343        140 VSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--K-E---------------LHFT-WL  194 (350)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--c-c---------------chhH-HH
Confidence            999999999999999999999999999764      69999999999998652  1 0               1122 46


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028591          167 GSILTVASCILWSSFYIMQVSNPSTSF  193 (207)
Q Consensus       167 G~ll~l~aa~~~a~y~v~~k~~~~~~~  193 (207)
                      |+++.++|+++|+.|+++.|+..++++
T Consensus       195 G~~~~l~s~~~~a~~~i~~k~~~~~~~  221 (350)
T PTZ00343        195 AFWCAMLSNLGSSLRSIFAKKTMKNKS  221 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999988764

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.69  E-value=1e-16  Score=117.32  Aligned_cols=125  Identities=23%  Similarity=0.409  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028591            6 ICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYV   85 (207)
Q Consensus         6 ~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t   85 (207)
                      ++||.+.+..|...++ .||....++|+..+++ +.++....+++...+.+++++......|.++...++.+++.+++++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            4799999999998875 9999999999999998 6666555444433456788888999999998899999999999999


Q ss_pred             ChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           86 HPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        86 ~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      ++++++.+.++.|+++.+++++++||+++++      +++|+++++.|+++++
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999764      6999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.61  E-value=3.7e-14  Score=117.78  Aligned_cols=167  Identities=22%  Similarity=0.342  Sum_probs=128.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS   81 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g   81 (207)
                      +...+.|+.+....|...++..++....+.|+..+..+..+.... ++.... ...+++++..+.+.++...++.+++.+
T Consensus        13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (292)
T COG0697          13 LLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLR-PALRPWLLLLLLALLGLALPFLLLFLA   90 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hccccc-ccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999987643666777777999998885443221 111111 122235567888888889999999999


Q ss_pred             hhccChhhHHHhhccchHHHHHHHH-HhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCC
Q 028591           82 MKYVHPTFMTAVVNTIPCMTFIIAV-VFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSV  160 (207)
Q Consensus        82 l~~t~a~~a~il~~~~P~~~~ila~-~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~  160 (207)
                      +++++++.++.+.++.|+++.+++. ++++||++++      ++.|.++++.|+.++...++.                 
T Consensus        91 ~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~-----------------  147 (292)
T COG0697          91 LKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG-----------------  147 (292)
T ss_pred             HhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc-----------------
Confidence            9999999999999999999999997 6679999754      699999999999988632110                 


Q ss_pred             Ccc-hHHHHHHHHHHHHHHHHHHHHhhhccCCcCC
Q 028591          161 HEN-WLKGSILTVASCILWSSFYIMQVSNPSTSFR  194 (207)
Q Consensus       161 ~~~-~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~  194 (207)
                      +.+ ...|+++.++++++|+.|.+..|+.. +++.
T Consensus       148 ~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~  181 (292)
T COG0697         148 GGILSLLGLLLALAAALLWALYTALVKRLS-RLGP  181 (292)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCh
Confidence            011 35899999999999999999999988 5543

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.59  E-value=7.2e-14  Score=119.57  Aligned_cols=173  Identities=20%  Similarity=0.241  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028591            6 ICVASVYFLTEDSFNQGLN-PHIYVTYRHAAGSLMMFPFAYFLERK-IRPKLTLAVFLEIFLLSLLGVSLALNLYFASMK   83 (207)
Q Consensus         6 ~~wg~~~i~~K~~l~~~~~-p~~l~~~R~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~   83 (207)
                      ++=.++....+...+++.+ |..-.++-+..-.++..+...+++++ +..+..+++|++++++|++-. ..+.+...|.+
T Consensus        23 l~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv-~aN~~~v~a~~  101 (334)
T PF06027_consen   23 LCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDV-EANYLVVLAYQ  101 (334)
T ss_pred             HHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHH-HHHHHHHHHhh
Confidence            3444555555554444555 55555555555445555554443222 112223567888899999864 67889999999


Q ss_pred             ccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcc
Q 028591           84 YVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHEN  163 (207)
Q Consensus        84 ~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~  163 (207)
                      ||+.+.+.++....-.++++++++++|||.++.      +++|+++|++|+.++...+....+          .+.++++
T Consensus       102 yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~~----------~~~~~~~  165 (334)
T PF06027_consen  102 YTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSGS----------DSSSGSN  165 (334)
T ss_pred             cccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccccc----------cCCCCCc
Confidence            999999999999998999999999999999764      699999999999887643321100          0123445


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhccCCcCCc
Q 028591          164 WLKGSILTVASCILWSSFYIMQVSNPSTSFRF  195 (207)
Q Consensus       164 ~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~~  195 (207)
                      ..+||++++.+++.||+|++++++..|++|..
T Consensus       166 ~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~  197 (334)
T PF06027_consen  166 PILGDLLALLGAILYAVSNVLEEKLVKKAPRV  197 (334)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence            67999999999999999999999999998753

Some of the sequences in this family are annotated as putative membrane proteins.

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.47  E-value=2.7e-13  Score=99.13  Aligned_cols=129  Identities=15%  Similarity=0.271  Sum_probs=110.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIR-PKLTLAVFLEIFLLSLLGVSLALNLYFA   80 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~gl~g~~~~~~~~~~   80 (207)
                      ++++++||...++.|+.++ ++||..-++.|......++..++....+.+. ...++|.|..+.+-|+-+ .+.-.+||.
T Consensus         9 LLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-glswl~Yf~   86 (140)
T COG2510           9 LLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLSWLLYFR   86 (140)
T ss_pred             HHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHHHHHHHH
Confidence            4688999999999999996 6999999999999998888887765433222 235788888888888665 677889999


Q ss_pred             HhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           81 SMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        81 gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      +++.-.++...-+..+.|+++.++++++++||+|.+      +++|+.+..+|+++++
T Consensus        87 ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs  138 (140)
T COG2510          87 ALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence            999999998888999999999999999999999875      5999999999998764

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.40  E-value=4.3e-12  Score=104.71  Aligned_cols=124  Identities=19%  Similarity=0.319  Sum_probs=105.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLN--PHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYF   79 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~--p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~   79 (207)
                      +.++++|+.+.+..|+..+ +.+  +.....+|+.++.+++.|+.+..++.  ...+.+++..+...|+++....+.+++
T Consensus       134 l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (260)
T TIGR00950       134 LGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIGTALAYFLWN  210 (260)
T ss_pred             HHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999875 356  44566678999999999887653322  234677888899999999999999999


Q ss_pred             HHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhH
Q 028591           80 ASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGV  134 (207)
Q Consensus        80 ~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv  134 (207)
                      .++++.+++.++.+.++.|+++.++++++++|+++.+      ++.|..+.+.|+
T Consensus       211 ~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       211 KGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence            9999999999999999999999999999999999764      599999999886

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.36  E-value=2.8e-12  Score=93.60  Aligned_cols=103  Identities=25%  Similarity=0.411  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHH
Q 028591           30 TYRHAAGSLMMFPFAYFLERKIR--PKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVV  107 (207)
Q Consensus        30 ~~R~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~  107 (207)
                      ++|+..+.+++..+...++|.+.  +..++|++.+....|+++...++.+++.|+++++ +.++.+.++.|+++.+++.+
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            68999999999888766432211  1234466777788899988889999999999999 58889999999999999999


Q ss_pred             hhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028591          108 FRLEIVDVRSPRGIAKILGTLASLVGVMVIAF  139 (207)
Q Consensus       108 ~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~  139 (207)
                      ++|||++.+      ++.|++++++|++++..
T Consensus        81 ~~~er~~~~------~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   81 FFKERLSPR------RWLAILLILIGVILIAW  106 (113)
T ss_pred             HhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence            999999765      69999999999999873

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.34  E-value=3.1e-11  Score=102.01  Aligned_cols=171  Identities=15%  Similarity=0.095  Sum_probs=120.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS   81 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g   81 (207)
                      ++++++||...+..|..-  +.++.++.  |..++.+++..+....+ +.+ ...++.+..-++.|++ ....|.+|+.+
T Consensus         7 lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~-~~~-~~~~~~~~~g~l~G~~-w~ig~~~~~~a   79 (290)
T TIGR00776         7 LIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFV-LPE-FWALSIFLVGLLSGAF-WALGQINQFKS   79 (290)
T ss_pred             HHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHh-CCc-ccccHHHHHHHHHHHH-HHhhhhhHHHH
Confidence            467899999999999853  68887775  88888887766554432 211 1123333323333333 56778999999


Q ss_pred             hhccChhhHHHhhc-cchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCC
Q 028591           82 MKYVHPTFMTAVVN-TIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSV  160 (207)
Q Consensus        82 l~~t~a~~a~il~~-~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~  160 (207)
                      +++++.+.|-.+.+ +.|++..+.+.+++||+.+.++  .....+|++++++|++++...++++.+           .++
T Consensus        80 i~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~--~~~~~~g~~l~l~G~~l~~~~~~~~~~-----------~~~  146 (290)
T TIGR00776        80 MRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQ--TLLGLLALILIIIGVYLTSRSKDKSAG-----------IKS  146 (290)
T ss_pred             HHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhHheEEeccccccc-----------ccc
Confidence            99999999988877 8889999999999999986542  112288999999999887532211100           000


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhccCCcCC
Q 028591          161 HENWLKGSILTVASCILWSSFYIMQVSNPSTSFR  194 (207)
Q Consensus       161 ~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~  194 (207)
                      ..+...|.++.+.|+++|+.|.+..|+.  ++++
T Consensus       147 ~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~  178 (290)
T TIGR00776       147 EFNFKKGILLLLMSTIGYLVYVVVAKAF--GVDG  178 (290)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHc--CCCc
Confidence            0233579999999999999999999976  3554

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.28  E-value=1.5e-10  Score=97.79  Aligned_cols=129  Identities=11%  Similarity=0.127  Sum_probs=105.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS   81 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g   81 (207)
                      +.++++|+.+.+..|+..+ +.+|...... ..++++++.|+......  ....+...+..++.+|+++..+.+.+|+.+
T Consensus       154 l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~  229 (293)
T PRK10532        154 LGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALPYSLEMIA  229 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5688999999999999754 5788777544 46667777777654221  122355666667899999999999999999


Q ss_pred             hhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhh
Q 028591           82 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFY  140 (207)
Q Consensus        82 l~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~  140 (207)
                      +++.+|+.++.+.++.|+++.++++++++|+++..      +++|..+.+.|++.....
T Consensus       230 ~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        230 LTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999764      599999999999887643

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.27  E-value=1.3e-10  Score=98.04  Aligned_cols=130  Identities=13%  Similarity=0.155  Sum_probs=107.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS   81 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g   81 (207)
                      +.++++|+.+.+..|+.- . -++....+++..++++++.++....+.......+.++|..+.++|+++..+.+.+|+.+
T Consensus       156 l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~  233 (292)
T PRK11272        156 LIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYL  233 (292)
T ss_pred             HHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999853 2 34566778899999998888765432211112356788899999999999999999999


Q ss_pred             hhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028591           82 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF  139 (207)
Q Consensus        82 l~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~  139 (207)
                      +++.++++++.+.++.|++++++++++++|+++..      +++|.++.+.|+++++.
T Consensus       234 ~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        234 LRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999764      69999999999988753

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.15  E-value=9.7e-10  Score=95.47  Aligned_cols=131  Identities=9%  Similarity=0.179  Sum_probs=98.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHHHHHHHHhhccC----CCCCHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNP-HIYVTYRHAAGSLMMFPFAYFLERKIR----PKLTLAVFLEIFLLSLLGVSLALN   76 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p-~~l~~~R~~~a~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~gl~g~~~~~~   76 (207)
                      +.++++|+.+.+..|..... .|| ...+++...++++.+.+.....++...    ...+.. ...+++.|+. ..+.+.
T Consensus       195 l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~-t~lay~  271 (358)
T PLN00411        195 TIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII-TSVYYV  271 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-HHHHHH
Confidence            46789999999999987664 555 466777777777777666554332211    112222 2235556654 567888


Q ss_pred             HHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhc
Q 028591           77 LYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYK  141 (207)
Q Consensus        77 ~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~  141 (207)
                      ++++++++.+|+.++++.++.|++++++++++++|++++.      +++|.++.+.|+++....+
T Consensus       272 lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~  330 (358)
T PLN00411        272 IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGK  330 (358)
T ss_pred             HHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999875      5999999999998876433

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.12  E-value=1.1e-09  Score=92.55  Aligned_cols=125  Identities=10%  Similarity=0.106  Sum_probs=96.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS   81 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g   81 (207)
                      +.++++|+.+.+..|+.. ++.+|....   +..+++.+.+.... ........+.+.|..+.+.|+ ...+.+.+++.+
T Consensus       162 l~aa~~~A~~~v~~k~~~-~~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~-~t~~~~~l~~~a  235 (295)
T PRK11689        162 FIGAFIWAAYCNVTRKYA-RGKNGITLF---FILTALALWIKYFL-SPQPAMVFSLPAIIKLLLAAA-AMGFGYAAWNVG  235 (295)
T ss_pred             HHHHHHHHHHHHHHhhcc-CCCCchhHH---HHHHHHHHHHHHHH-hcCccccCCHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            578899999999999964 357887653   23344444443322 221112345677878777774 578889999999


Q ss_pred             hhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           82 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        82 l~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      +++.+|++++.+.++.|++..++++++++|+++..      +++|.++.+.|+.+..
T Consensus       236 l~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        236 ILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence            99999999999999999999999999999999765      5999999999998764

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.09  E-value=4.4e-10  Score=95.86  Aligned_cols=112  Identities=18%  Similarity=0.273  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCC
Q 028591           64 FLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGP  143 (207)
Q Consensus        64 ~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~  143 (207)
                      +....+ -++.+..++.++.+|+++..+++.++.-+|+..++.++..||+++      .|.+++++++.|+++++..+..
T Consensus       163 l~fc~l-WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~------sKllav~~si~GViiVt~~~s~  235 (416)
T KOG2765|consen  163 LFFCPL-WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTL------SKLLAVFVSIAGVIIVTMGDSK  235 (416)
T ss_pred             HHHHHH-HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhH------HHHHHHHHhhccEEEEEecccc
Confidence            334444 367899999999999999999999999999999999999999976      4799999999999988754322


Q ss_pred             CCCCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028591          144 AVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSF  193 (207)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~  193 (207)
                      +.           .+..+.+..+|+++.+++|+.||+|+++-||...++.
T Consensus       236 ~~-----------~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg  274 (416)
T KOG2765|consen  236 QN-----------SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEG  274 (416)
T ss_pred             cc-----------ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            11           0122345678999999999999999999999888774

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.06  E-value=5.1e-09  Score=88.69  Aligned_cols=131  Identities=9%  Similarity=0.148  Sum_probs=99.5

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHHHHHHHHHHHhhcc-----CCCCCHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLN--PHIYVTYRHAAGSLMMFPFAYFLERKI-----RPKLTLAVFLEIFLLSLLGVSLA   74 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~--p~~l~~~R~~~a~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~gl~g~~~~   74 (207)
                      +.++++|+.+.+..|...++.-+  ......+-.+.+.+.+.......+...     ....+.++|..++++|++++.+.
T Consensus       149 l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~  228 (299)
T PRK11453        149 LAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVG  228 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHH
Confidence            57889999999999986543212  233344444444443333333222211     11346788999999999999999


Q ss_pred             HHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           75 LNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        75 ~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      +.+++.++++.++++++.+.++.|++..++++++++|+++..      +++|.++.+.|+.+..
T Consensus       229 ~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        229 YGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999765      5999999999998764

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.04  E-value=1.2e-08  Score=84.78  Aligned_cols=155  Identities=13%  Similarity=0.148  Sum_probs=118.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccC-C--CCCHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIR-P--KLTLAVFLEIFLLSLLGVSLALNLY   78 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~-~--~~~~~~~~~~~~~gl~g~~~~~~~~   78 (207)
                      +.+.++||..+...|.. + ++|+.++.+.|...+..++..+....++.+. .  ..++|.+....+.+++ ...+-..|
T Consensus        13 l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l-i~~nW~lf   89 (293)
T COG2962          13 LLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL-IGLNWWLF   89 (293)
T ss_pred             HHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-HHHHHHHh
Confidence            46789999999999974 4 5999999999999998888766554332211 1  1234555555556655 46788899


Q ss_pred             HHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCC
Q 028591           79 FASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTN  158 (207)
Q Consensus        79 ~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~  158 (207)
                      .+++++-.+-.+|+=.++.|++.++++.+++|||+++      .|+++++++.+||.......|+               
T Consensus        90 iWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~------~Q~iAV~lA~~GV~~~~~~~g~---------------  148 (293)
T COG2962          90 IWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSR------LQWIAVGLAAAGVLIQTWLLGS---------------  148 (293)
T ss_pred             heecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHcCC---------------
Confidence            9999999999999999999999999999999999964      5799999999999876533221               


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHhhhc
Q 028591          159 SVHENWLKGSILTVASCILWSSFYIMQVSN  188 (207)
Q Consensus       159 ~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~  188 (207)
                         -.|     ..+.=+++|+.|-.+-|+.
T Consensus       149 ---lpw-----val~la~sf~~Ygl~RK~~  170 (293)
T COG2962         149 ---LPW-----VALALALSFGLYGLLRKKL  170 (293)
T ss_pred             ---CcH-----HHHHHHHHHHHHHHHHHhc
Confidence               222     2356688999999885544

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.03  E-value=1.9e-09  Score=91.22  Aligned_cols=132  Identities=11%  Similarity=0.171  Sum_probs=99.5

Q ss_pred             hhhHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHHHHHHHHHHHhhccCCC---------CCHHH-HHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQ-GLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPK---------LTLAV-FLEIFLLSLLG   70 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~-~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~---------~~~~~-~~~~~~~gl~g   70 (207)
                      ++++++|+.+.+..|+..++ +.||..+..+....+++.+.|+....+......         .+... +...+..+...
T Consensus       151 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (302)
T TIGR00817       151 MISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGF  230 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHH
Confidence            56889999999999997651 589999999999999999999876533211000         00001 11122333323


Q ss_pred             HHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028591           71 VSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF  139 (207)
Q Consensus        71 ~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~  139 (207)
                      ...++.+++.++++++|+.+++..++.|++++++++++++|+++.+      +++|.++.+.|+.+...
T Consensus       231 ~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       231 FHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence            3445567788999999999999999999999999999999999875      59999999999988764

specificities overlap.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.97  E-value=2.2e-09  Score=90.09  Aligned_cols=127  Identities=14%  Similarity=0.085  Sum_probs=89.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchH----HHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHI----YVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNL   77 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~----l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~   77 (207)
                      +.++++|+.+.+..|...+ +.+|..    ...+.....++.+.+....++++ ....+...+......+.++..+.+.+
T Consensus       150 l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~l~~~l  227 (281)
T TIGR03340       150 LAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SMFPYARQILPSATLGGLMIGGAYAL  227 (281)
T ss_pred             HHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhcc-chhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5678999999999997633 345432    22333333322222221111111 11112233445677777778889999


Q ss_pred             HHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHH
Q 028591           78 YFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV  136 (207)
Q Consensus        78 ~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~l  136 (207)
                      ++.++++.+++.++.+.++.|+++.++++++++|+++..      +++|..+.+.|+.+
T Consensus       228 ~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l  280 (281)
T TIGR03340       228 VLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence            999999999999999999999999999999999999764      59999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.92  E-value=4.5e-08  Score=79.82  Aligned_cols=146  Identities=12%  Similarity=0.172  Sum_probs=109.8

Q ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHh
Q 028591           14 LTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAV   93 (207)
Q Consensus        14 ~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il   93 (207)
                      +.|.... .+.|.-.+++|..++++++.++  ++.++  .+.+++++..+...|..- ...|.+||.+++..+=+.+..+
T Consensus        30 ~Ak~LFP-~vG~~g~t~lRl~~aaLIll~l--~RPwr--~r~~~~~~~~~~~yGvsL-g~MNl~FY~si~riPlGiAVAi  103 (292)
T COG5006          30 FAKSLFP-LVGAAGVTALRLAIAALILLAL--FRPWR--RRLSKPQRLALLAYGVSL-GGMNLLFYLSIERIPLGIAVAI  103 (292)
T ss_pred             HHHHHcc-ccChhhHHHHHHHHHHHHHHHH--hhHHH--hccChhhhHHHHHHHHHH-HHHHHHHHHHHHhccchhhhhh
Confidence            3455455 5899999999999999999876  33322  246788999999999864 4568889999999999999999


Q ss_pred             hccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHHHH
Q 028591           94 VNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVA  173 (207)
Q Consensus        94 ~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~  173 (207)
                      +++-|+.+..++.   |..         +..+-+.+++.|+.++.. .+++.              ... ...|..+.+.
T Consensus       104 EF~GPL~vA~~~s---Rr~---------~d~vwvaLAvlGi~lL~p-~~~~~--------------~~l-Dp~Gv~~Al~  155 (292)
T COG5006         104 EFTGPLAVALLSS---RRL---------RDFVWVALAVLGIWLLLP-LGQSV--------------WSL-DPVGVALALG  155 (292)
T ss_pred             hhccHHHHHHHhc---cch---------hhHHHHHHHHHHHHhhee-ccCCc--------------CcC-CHHHHHHHHH
Confidence            9999998766532   222         245677888999988752 22111              112 2589999999


Q ss_pred             HHHHHHHHHHHhhhccCCcC
Q 028591          174 SCILWSSFYIMQVSNPSTSF  193 (207)
Q Consensus       174 aa~~~a~y~v~~k~~~~~~~  193 (207)
                      +..||+.|.+..||.-+..|
T Consensus       156 AG~~Wa~YIv~G~r~g~~~~  175 (292)
T COG5006         156 AGACWALYIVLGQRAGRAEH  175 (292)
T ss_pred             HhHHHHHHHHHcchhcccCC
Confidence            99999999999999876444

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.87  E-value=6e-08  Score=82.36  Aligned_cols=154  Identities=20%  Similarity=0.137  Sum_probs=115.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHH
Q 028591           24 NPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFI  103 (207)
Q Consensus        24 ~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~i  103 (207)
                      .|..+++..+....+.-.+.....+   .++.+++.++..+..+++- .+...+-+.+++|.|...-.++-++.|+.+++
T Consensus        31 ~~~~lt~~q~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi  106 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALFSFILLSLFK---FPKSRKIPLKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPVMI  106 (303)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhcc---ccCCCcChHHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHH
Confidence            3889999999998877766543322   1122344455667777664 56788899999999999999999999999999


Q ss_pred             HHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 028591          104 IAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYI  183 (207)
Q Consensus       104 la~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v  183 (207)
                      ++.+++|+|.+++      |+.++++..+|+.+....+.....         .......++..|+++++.+.++-+.+.+
T Consensus       107 ~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~---------~~~~~~~~~~~G~~ll~~sl~~~a~~~~  171 (303)
T PF08449_consen  107 LGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS---------SSNSSSFSSALGIILLLLSLLLDAFTGV  171 (303)
T ss_pred             HHHHhcCccccHH------HHHHHHHHHhhHheeeeccccccc---------ccccccccchhHHHHHHHHHHHHHHHHH
Confidence            9999999998654      699999999999886543322111         0011122234599999999999999999


Q ss_pred             HhhhccCCcCCce
Q 028591          184 MQVSNPSTSFRFF  196 (207)
Q Consensus       184 ~~k~~~~~~~~~~  196 (207)
                      +|+|..++|+...
T Consensus       172 ~qe~~~~~~~~~~  184 (303)
T PF08449_consen  172 YQEKLFKKYGKSP  184 (303)
T ss_pred             HHHHHHHHhCCcH
Confidence            9999999887544

; GO: 0055085 transmembrane transport

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=98.84  E-value=8.2e-10  Score=90.55  Aligned_cols=181  Identities=17%  Similarity=0.259  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 028591            6 ICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYV   85 (207)
Q Consensus         6 ~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t   85 (207)
                      ..+..+.++.+..++  .+|....-.|+..-.++..|...+.+....-+...|  +++++=|+.|.++ ..+.|++++|.
T Consensus        47 ~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R--~~LiLRg~mG~tg-vmlmyya~~~m  121 (346)
T KOG4510|consen   47 YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR--KWLILRGFMGFTG-VMLMYYALMYM  121 (346)
T ss_pred             HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE--EEEEeehhhhhhH-HHHHHHHHhhc
Confidence            455556666666553  699999999977766666665443221110111122  2345555666444 34566799999


Q ss_pred             ChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchH
Q 028591           86 HPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWL  165 (207)
Q Consensus        86 ~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~  165 (207)
                      +-+.|+++....|+++.++++.++|||.+      +.+.+|..+.+.|+++++.  .+ +- +++..+.++ .++.+...
T Consensus       122 slaDA~vItFssPvft~ifaw~~LkE~~t------~~eaL~s~itl~GVVLIvR--Pp-Fl-FG~~t~g~~-~s~~~~~~  190 (346)
T KOG4510|consen  122 SLADAVVITFSSPVFTIIFAWAFLKEPFT------KFEALGSLITLLGVVLIVR--PP-FL-FGDTTEGED-SSQVEYDI  190 (346)
T ss_pred             chhheEEEEecChHHHHHHHHHHHcCCCc------HHHHHHHHHhhheEEEEec--CC-cc-cCCCccccc-cccccccC
Confidence            99999999999999999999999999986      4679999999999999862  11 11 111111011 11112234


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCcCCceeeeeee
Q 028591          166 KGSILTVASCILWSSFYIMQVSNPSTSFRFFSFEWYT  202 (207)
Q Consensus       166 ~G~ll~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~  202 (207)
                      .|....+.+++.-|--.++-|+.-|+.+...+..++.
T Consensus       191 ~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~  227 (346)
T KOG4510|consen  191 PGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFS  227 (346)
T ss_pred             CchHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHH
Confidence            6777788888877777777788778777766666554

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.74  E-value=3.9e-07  Score=79.02  Aligned_cols=131  Identities=13%  Similarity=0.175  Sum_probs=94.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhC------CCCchHHHHHHHHHHHHHHHHHHHHHhhccCC--------CCCH---HHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQ------GLNPHIYVTYRHAAGSLMMFPFAYFLERKIRP--------KLTL---AVFLEIF   64 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~------~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~--------~~~~---~~~~~~~   64 (207)
                      ++++++|+...+..|..+++      ++++..+..+-..+++++++|+....+.....        ..+.   .......
T Consensus       200 l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i  279 (350)
T PTZ00343        200 MLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKI  279 (350)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHH
Confidence            46789999999999998753      25677777777889999999987643321100        0011   1111122


Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           65 LLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        65 ~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      +.+.+...+++...+.++++++|..+++..++-|+++.++++++++|+++..      +++|.++.+.|+++-+
T Consensus       280 ~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        280 FFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALLYS  347 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHHHh
Confidence            2222333444444557999999999999999999999999999999999865      5999999999998754

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.73  E-value=1.9e-07  Score=79.03  Aligned_cols=129  Identities=12%  Similarity=0.103  Sum_probs=86.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQG-LNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFA   80 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~-~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~   80 (207)
                      +.++++|+.+.+..|....+. .++.....+-..++...+.++... ........+...+..+...|+ ...+.+.+++.
T Consensus       155 l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~~~~  232 (296)
T PRK15430        155 LGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS-STSHMGQNPMSLNLLLIAAGI-VTTVPLLCFTA  232 (296)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC-CcccccCCcHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            467899999999999863221 122333333344443333222100 000001112223334444555 45688999999


Q ss_pred             HhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           81 SMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        81 gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      ++++.+|+.++.+.++.|++..++++++++|+++..      +++|.++.+.|+.++.
T Consensus       233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999765      5899999988887665

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.71  E-value=4.3e-07  Score=68.97  Aligned_cols=128  Identities=21%  Similarity=0.323  Sum_probs=104.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhC------CCCchHHHHHHHHHHHHHHHHHHHHHhhccCC----CC-------CHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQ------GLNPHIYVTYRHAAGSLMMFPFAYFLERKIRP----KL-------TLAVFLEIF   64 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~------~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~----~~-------~~~~~~~~~   64 (207)
                      +.+.++.+...+..|..+++      +.+|..+..+-...+.+++.|.....++.+..    ..       +.+.+..++
T Consensus         6 l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (153)
T PF03151_consen    6 LASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLI   85 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHH
Confidence            46778889999999998865      69999999999999999999988775543211    00       223445555


Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHH
Q 028591           65 LLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV  136 (207)
Q Consensus        65 ~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~l  136 (207)
                      ..|+++ ...+...+..+++++|...++..+.-.+.+.+++.++++|+++.+      +++|+.+++.|.+.
T Consensus        86 ~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   86 LSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            666665 578899999999999999999999999999999999999999764      69999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.67  E-value=6.9e-07  Score=73.95  Aligned_cols=126  Identities=16%  Similarity=0.262  Sum_probs=98.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVT-YRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFA   80 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~-~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~   80 (207)
                      +.+.++|+.+.+..|...  ..++..... +....+.....+.  ...... ...+.+++..+...|+++....+.+++.
T Consensus       160 l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~~  234 (292)
T COG0697         160 LAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLF--FLSGFG-APILSRAWLLLLYLGVFSTGLAYLLWYY  234 (292)
T ss_pred             HHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHH--Hhcccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999765  467777776 4444222222222  111111 2346788889999999998889999999


Q ss_pred             HhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           81 SMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        81 gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      +++..+++.++.+..+.|++..++++++++|+++.+      +++|..+.+.|+.+..
T Consensus       235 ~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         235 ALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999765      5999999999998765

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.58  E-value=1.3e-06  Score=72.19  Aligned_cols=127  Identities=16%  Similarity=0.201  Sum_probs=98.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHH
Q 028591           56 TLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVM  135 (207)
Q Consensus        56 ~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~  135 (207)
                      ++|+...+.+=+++ ....+.+.+.++++.+|+.=.++..+-.+++++++++++|+|++.+      +|.++.+.+.|+.
T Consensus        13 ~~~~~~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~   85 (244)
T PF04142_consen   13 SPKDTLKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVV   85 (244)
T ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHh
Confidence            46777777777777 5788999999999999999999999999999999999999999765      5999999999998


Q ss_pred             HHhhhcCCCCCCCCCCCccCCC--CCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028591          136 VIAFYKGPAVPSLKGAPIHLGT--NSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSF  193 (207)
Q Consensus       136 ll~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~  193 (207)
                      +....+....+  +++  ....  .....+...|.++.++++++-++-.++.+|.+|+.+
T Consensus        86 lv~~~~~~~~~--~~~--~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~  141 (244)
T PF04142_consen   86 LVQLSSSQSSD--NSS--SSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN  141 (244)
T ss_pred             eeecCCccccc--ccc--ccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            86532211100  000  0000  011234568999999999999999999999999886

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.58  E-value=8.2e-07  Score=75.05  Aligned_cols=126  Identities=13%  Similarity=0.107  Sum_probs=91.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHH---HHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRH---AAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLY   78 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~---~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~   78 (207)
                      +++.+.++.+.+..|..   +.||.+..+...   .+++.++.+..  + + .++ .+.+......+.|++ ....+.+|
T Consensus       158 l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~-~~~-~~~~~~~~~~~~Gi~-~~ia~~~y  228 (290)
T TIGR00776       158 LMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--I-L-AKP-LKKYAILLNILPGLM-WGIGNFFY  228 (290)
T ss_pred             HHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--h-c-ccc-hHHHHHHHHHHHHHH-HHHHHHHH
Confidence            46788999999999964   379998854444   44444433321  1 1 122 223333444558888 68889999


Q ss_pred             HHHhh-ccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           79 FASMK-YVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        79 ~~gl~-~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      +.+.+ +.+++.++++.+..|+...+.+.+++||+.+.++.  +.-.+|.++.+.|+.++.
T Consensus       229 ~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~--~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       229 LFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREM--IAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCccee--ehhHHHHHHHHHHHHHHh
Confidence            99999 99999999999999999999999999999987651  112289999999998764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.51  E-value=1.5e-06  Score=63.19  Aligned_cols=69  Identities=19%  Similarity=0.210  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           64 FLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        64 ~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      ...++.+....+.++..++++.+.+.|-.+.++.|+++.+++++++|||++.+      |++|+.+.++|++++.
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            34445777888999999999999999999989999999999999999999865      5999999999998874

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.33  E-value=6.6e-06  Score=67.32  Aligned_cols=124  Identities=11%  Similarity=0.132  Sum_probs=101.5

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028591            3 LLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASM   82 (207)
Q Consensus         3 ~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl   82 (207)
                      .+..||+.+-+..|++-+ ..+--.-++.-+++|+++.+|+..... . ..-.+++.+..-+..|+++..+.+.+...++
T Consensus       155 ~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~a-g-~~l~~p~ll~laLgvavlSSalPYsLEmiAL  231 (292)
T COG5006         155 GAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQA-G-PALFSPSLLPLALGVAVLSSALPYSLEMIAL  231 (292)
T ss_pred             HHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhc-c-hhhcChHHHHHHHHHHHHhcccchHHHHHHH
Confidence            577899999999999853 355567778899999999999976321 1 1123566666677888999999999999999


Q ss_pred             hccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHH
Q 028591           83 KYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVM  135 (207)
Q Consensus        83 ~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~  135 (207)
                      +..++..=++++++.|.+..+.++++++|+++..      ||.|+...+.+..
T Consensus       232 ~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsa  278 (292)
T COG5006         232 RRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASA  278 (292)
T ss_pred             hhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHh
Confidence            9999999999999999999999999999999875      4788777766654

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.27  E-value=9.8e-05  Score=63.18  Aligned_cols=177  Identities=15%  Similarity=0.120  Sum_probs=129.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHHHHHHHHHHHhhc---c-CCCC------CHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQG---LNPHIYVTYRHAAGSLMMFPFAYFLERK---I-RPKL------TLAVFLEIFLLSL   68 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~---~~p~~l~~~R~~~a~~~l~~~~~~~~~~---~-~~~~------~~~~~~~~~~~gl   68 (207)
                      +...+.+++.....|++-..+   ..|.+.++.--.+-.++.....+...|+   + ...+      .+++.....+=++
T Consensus        21 ~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~  100 (345)
T KOG2234|consen   21 IVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPAL  100 (345)
T ss_pred             HHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHH
Confidence            456677888899999887655   6678888888877777666665544322   1 1111      2345555555555


Q ss_pred             HHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCC
Q 028591           69 LGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSL  148 (207)
Q Consensus        69 ~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~  148 (207)
                      + .++.|.++|.++.+.+|+.-.+...+--..|++++.+++++|++++      +|.++++.++|+.++.....+..+  
T Consensus       101 i-YalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~~~~--  171 (345)
T KOG2234|consen  101 I-YALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLSPTG--  171 (345)
T ss_pred             H-HHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCCCCC--
Confidence            5 4667779999999999999999999999999999999999999765      599999999999987521111110  


Q ss_pred             CCCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028591          149 KGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSF  193 (207)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~  193 (207)
                       .+     ......+...|....+.++++-+.-.++.+|.+|+-.
T Consensus       172 -a~-----~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~  210 (345)
T KOG2234|consen  172 -AK-----SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN  210 (345)
T ss_pred             -cc-----CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence             00     0122345678999999999999999999999998765

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.07  E-value=1.5e-05  Score=59.54  Aligned_cols=70  Identities=20%  Similarity=0.405  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHH--hhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           63 IFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVV--FRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        63 ~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~--~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      .+++|+.+..+.+.++..+++..+++.|.-+.+..|.++.+.++.  +++|+++++      |++|+.+.++|++++.
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            577889999999999999999999999999999999888888875  899999865      6999999999999876

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.98  E-value=3.8e-05  Score=65.54  Aligned_cols=151  Identities=16%  Similarity=0.139  Sum_probs=112.6

Q ss_pred             HHHHHHh--CCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHH
Q 028591           14 LTEDSFN--QGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMT   91 (207)
Q Consensus        14 ~~K~~l~--~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~   91 (207)
                      ..|..++  +.--|..++..++.++.+.+...-.....+..+..++..+..++-+|++- ++...+-+.++++.+.+..-
T Consensus        35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF~q  113 (316)
T KOG1441|consen   35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSFYQ  113 (316)
T ss_pred             eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchhHHH
Confidence            4577776  43458999999888887777654333222211111334566777778764 56677888999999999999


Q ss_pred             HhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHH
Q 028591           92 AVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILT  171 (207)
Q Consensus        92 il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~  171 (207)
                      .+=.+.|.++.++++++.+|+.+++      ..+.++....|+.+-+.  +                +...+ ..|.+..
T Consensus       114 ~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~--~----------------e~~fn-~~G~i~a  168 (316)
T KOG1441|consen  114 TIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASV--T----------------ELSFN-LFGFISA  168 (316)
T ss_pred             HHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeee--c----------------ccccc-HHHHHHH
Confidence            9999999999999999999999765      36778888888876542  1                11123 4799999


Q ss_pred             HHHHHHHHHHHHHhhhccC
Q 028591          172 VASCILWSSFYIMQVSNPS  190 (207)
Q Consensus       172 l~aa~~~a~y~v~~k~~~~  190 (207)
                      +++.++.+..++++|++.+
T Consensus       169 ~~s~~~~al~~I~~~~ll~  187 (316)
T KOG1441|consen  169 MISNLAFALRNILSKKLLT  187 (316)
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999985

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.92  E-value=1.6e-05  Score=62.99  Aligned_cols=98  Identities=18%  Similarity=0.255  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCC
Q 028591           72 SLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGA  151 (207)
Q Consensus        72 ~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~  151 (207)
                      ++.++.|..+++..+|+.++.+..+.-.|+.+++++.+++|+..      .|++..++++.|++.++..+.         
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~------~kIlaailAI~GiVmiay~DN---------  128 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMG------FKILAAILAIGGIVMIAYADN---------  128 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhh------hhHHHHHHHhCcEEEEEeccc---------
Confidence            45688999999999999999999999999999999999999975      469999999999988763221         


Q ss_pred             CccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q 028591          152 PIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTS  192 (207)
Q Consensus       152 ~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~  192 (207)
                              ...+...|..+.++|++.-|+|-++-|+....-
T Consensus       129 --------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA  161 (290)
T KOG4314|consen  129 --------EHADEIIGIACAVGSAFMAALYKVLFKMFIGNA  161 (290)
T ss_pred             --------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                    122335899999999999999999999987654

>TIGR00688 rarD rarD protein

Probab=97.79  E-value=0.00052  Score=56.58  Aligned_cols=99  Identities=10%  Similarity=0.196  Sum_probs=67.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHH---HhhccC-CC-CCHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYF---LERKIR-PK-LTLAVFLEIFLLSLLGVSLALN   76 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~---~~~~~~-~~-~~~~~~~~~~~~gl~g~~~~~~   76 (207)
                      +.++++|+.+.+..|...++  ++.....     +...+.|....   ...... .. .+.++|..++.+|+. +.+.+.
T Consensus       152 l~aa~~~a~~~i~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~  223 (256)
T TIGR00688       152 LVLAFSFTAYGLIRKALKNT--DLAGFCL-----ETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLL  223 (256)
T ss_pred             HHHHHHHHHHHHHHhhcCCC--CcchHHH-----HHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHH
Confidence            46789999999999986432  3322222     12222222211   111111 11 123588889999987 678999


Q ss_pred             HHHHHhhccChhhHHHhhccchHHHHHHHHHh
Q 028591           77 LYFASMKYVHPTFMTAVVNTIPCMTFIIAVVF  108 (207)
Q Consensus        77 ~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~  108 (207)
                      +++.|+++.+|+.++.+.++.|+++.+++.+.
T Consensus       224 l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       224 AFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.78  E-value=0.0003  Score=60.66  Aligned_cols=131  Identities=18%  Similarity=0.088  Sum_probs=98.1

Q ss_pred             ChhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CHHHHHHHHHHHHHHHHHHHHHH
Q 028591            1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKL--TLAVFLEIFLLSLLGVSLALNLY   78 (207)
Q Consensus         1 ~~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~gl~g~~~~~~~~   78 (207)
                      ++.+++++|.+.+.-|...++ .|+..+...=-+++.++..+.....+++...+.  +.+....++.. .++.+..+.+.
T Consensus       173 ~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~-~~~lf~~y~l~  250 (334)
T PF06027_consen  173 ALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGY-ALCLFLFYSLV  250 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHH-HHHHHHHHHHH
Confidence            467899999999999998764 788888777777788887777666666544323  33433332322 33445666677


Q ss_pred             HHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028591           79 FASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF  139 (207)
Q Consensus        79 ~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~  139 (207)
                      ...+++++|+...+=.-+...++++...++++|++++.      .++|.++.++|.++...
T Consensus       251 p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~  305 (334)
T PF06027_consen  251 PIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL  305 (334)
T ss_pred             HHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence            88899999987777777888999999999999999764      58999999999987654

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.71  E-value=0.00089  Score=55.91  Aligned_cols=169  Identities=12%  Similarity=0.108  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHh---CCCC----chHHHHHHHHHHHHHHHHHHHHHhhccCC---------------CCCHHHHHHHHHH
Q 028591            9 ASVYFLTEDSFN---QGLN----PHIYVTYRHAAGSLMMFPFAYFLERKIRP---------------KLTLAVFLEIFLL   66 (207)
Q Consensus         9 g~~~i~~K~~l~---~~~~----p~~l~~~R~~~a~~~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~~   66 (207)
                      ..+.+.+|.+=+   +|-|    |+.-+..-|+-=..++..+..++.|...+               +.+++.+..-.++
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~   95 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALC   95 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHH
Confidence            367788887642   2333    55555555555567777666555442211               1122211112233


Q ss_pred             HHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCC
Q 028591           67 SLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVP  146 (207)
Q Consensus        67 gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~  146 (207)
                      -    .....+.|.|+.+|+|+.=-.+-...-+|+-+++.-+++.++..+      +|+|+.....|++.+...+   ..
T Consensus        96 D----i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d---~~  162 (372)
T KOG3912|consen   96 D----IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD---VH  162 (372)
T ss_pred             H----HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee---cc
Confidence            3    344567789999999998888888889999999999999998654      6999999999998763211   00


Q ss_pred             CCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcCCce
Q 028591          147 SLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSFRFF  196 (207)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~~~  196 (207)
                      . .++   |  -...++...||++.+.+-+.-|.-.++-+|.+++++..+
T Consensus       163 ~-~~~---p--~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~p  206 (372)
T KOG3912|consen  163 L-VTD---P--YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAP  206 (372)
T ss_pred             c-ccC---C--ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCH
Confidence            0 000   0  011234568999999999999999999999998877444

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.66  E-value=0.0014  Score=54.65  Aligned_cols=117  Identities=18%  Similarity=0.184  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhh-ccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHH
Q 028591           57 LAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVV-NTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVM  135 (207)
Q Consensus        57 ~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~-~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~  135 (207)
                      .+.+..-++.|++- ...|...+.+.++.+.+++--+. ..+=+.+.+++.++++|.-+.+++  ..-.+++++.++|+.
T Consensus        42 ~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~  118 (269)
T PF06800_consen   42 GTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVI  118 (269)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHH
Confidence            47777777777764 67899999999999999887665 467777889999999998765542  223447788888888


Q ss_pred             HHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhh
Q 028591          136 VIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVS  187 (207)
Q Consensus       136 ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~  187 (207)
                      +.+..++++..           .+++.+...|.+..+++++.|..|.+..|-
T Consensus       119 lts~~~~~~~~-----------~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~  159 (269)
T PF06800_consen  119 LTSYQDKKSDK-----------SSSKSNMKKGILALLISTIGYWIYSVIPKA  159 (269)
T ss_pred             Hhccccccccc-----------cccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence            77643222110           012345567999999999999999999665

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=97.63  E-value=1.6e-06  Score=71.12  Aligned_cols=147  Identities=19%  Similarity=0.202  Sum_probs=104.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHH
Q 028591           25 PHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFII  104 (207)
Q Consensus        25 p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~il  104 (207)
                      |..=.++-...=+++--|+..+++ +    .-+..|...+++++.-+- .+.+.-.+.|||+-+...++-.-.-..+.++
T Consensus        48 Pt~QtFl~Y~LLalVY~~~~~fR~-~----~~~~~~~hYilla~~DVE-aNy~vV~AyQyTsmtSi~lLDcwaip~v~~l  121 (336)
T KOG2766|consen   48 PTSQTFLNYVLLALVYGPIMLFRR-K----YIKAKWRHYILLAFVDVE-ANYFVVKAYQYTSMTSIMLLDCWAIPCVLVL  121 (336)
T ss_pred             ccHHHHHHHHHHHHHHhhHHHhhh-H----HHHHHHHHhhheeEEeec-ccEEEeeehhhcchHHHHHHHHhhhHHHHHH
Confidence            555556666665666666665532 2    113345568888887543 3445567889999999998887555567889


Q ss_pred             HHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 028591          105 AVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIM  184 (207)
Q Consensus       105 a~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~  184 (207)
                      +++++|.|-++      .|+.|+++|+.|++.+++.+-.           .++..++++..+||.+++++|-+||+.++.
T Consensus       122 sw~fLktrYrl------mki~gV~iCi~GvvmvV~sDV~-----------agd~aggsnp~~GD~lvi~GATlYaVSNv~  184 (336)
T KOG2766|consen  122 SWFFLKTRYRL------MKISGVVICIVGVVMVVFSDVH-----------AGDRAGGSNPVKGDFLVIAGATLYAVSNVS  184 (336)
T ss_pred             HHHHHHHHHhh------heeeeEEeEecceEEEEEeeec-----------cccccCCCCCccCcEEEEecceeeeecccc
Confidence            99999988754      4699999999999887743211           111234566789999999999999999998


Q ss_pred             hhhccCCcCC
Q 028591          185 QVSNPSTSFR  194 (207)
Q Consensus       185 ~k~~~~~~~~  194 (207)
                      ..-+.|+.|.
T Consensus       185 EEflvkn~d~  194 (336)
T KOG2766|consen  185 EEFLVKNADR  194 (336)
T ss_pred             HHHHHhcCcH
Confidence            8888887764

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=97.35  E-value=0.00044  Score=58.22  Aligned_cols=114  Identities=20%  Similarity=0.268  Sum_probs=78.0

Q ss_pred             CCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHH
Q 028591           54 KLTLAVFL-EIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLV  132 (207)
Q Consensus        54 ~~~~~~~~-~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~  132 (207)
                      ..++++.. ++.-.|+. ..+.-.+.+++++|++.+.=+..=+..|+|+.+.+.+|.-||+++.      -..-+.+..+
T Consensus        77 ~~sw~~~Lr~~aPtala-ta~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~  149 (349)
T KOG1443|consen   77 VLSWRDYLRRLAPTALA-TALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAV  149 (349)
T ss_pred             CCcHHHHHHHhhhhhhh-hhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhh
Confidence            34565544 44445554 4678889999999999998888889999999999999999998763      1223333444


Q ss_pred             hHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028591          133 GVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSF  193 (207)
Q Consensus       133 Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~  193 (207)
                      |+++.+ ++..+                 .+ ..|..++.+|+++-++==.+.+.+.+|.|
T Consensus       150 Glflft-~KsTq-----------------f~-i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~  191 (349)
T KOG1443|consen  150 GLFLFT-YKSTQ-----------------FN-IEGFFLVLAASLLSGLRWAFTQMLLRNQP  191 (349)
T ss_pred             heeEEE-ecccc-----------------ee-ehhHHHHHHHHHhhhhhHHHHHHHHhcCc
Confidence            455544 33221                 11 46888888888877766666666666665

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.25  E-value=0.0088  Score=50.71  Aligned_cols=130  Identities=16%  Similarity=0.205  Sum_probs=97.3

Q ss_pred             hhhHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHHHHHHH--Hhhc-cCC---CCCHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFN-QGLNPHIYVTYRHAAGSLMMFPFAYF--LERK-IRP---KLTLAVFLEIFLLSLLGVSLA   74 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~-~~~~p~~l~~~R~~~a~~~l~~~~~~--~~~~-~~~---~~~~~~~~~~~~~gl~g~~~~   74 (207)
                      ++..++-|...+.-+...+ ++.+|.+..++-.+++.++..+....  .... +..   ...++.+..++...+.+. ..
T Consensus       160 ~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~-~g  238 (303)
T PF08449_consen  160 LLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGA-LG  238 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHH-HH
Confidence            3456677778888887774 46899999999999998888777655  1111 000   112334555666666664 45


Q ss_pred             HHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           75 LNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        75 ~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      +.+.+.-.+..+|...+++..+--+++.+++.++++|+++..      +|.|+++.+.|..+=.
T Consensus       239 ~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~  296 (303)
T PF08449_consen  239 QFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYS  296 (303)
T ss_pred             HHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHH
Confidence            666677789999999999999999999999999999999765      5999999999998754

; GO: 0055085 transmembrane transport

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.19  E-value=0.0015  Score=47.45  Aligned_cols=110  Identities=15%  Similarity=0.153  Sum_probs=74.1

Q ss_pred             ChhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            1 MILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFA   80 (207)
Q Consensus         1 ~~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~   80 (207)
                      |+++.++||.+.++.|.+.. +.++..-.. |..--...+     +        .+++   +.  .++.-.-.....|+.
T Consensus         1 ~l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~L-----l--------~n~~---y~--ipf~lNq~GSv~f~~   60 (113)
T PF10639_consen    1 LLLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKFL-----L--------LNPK---YI--IPFLLNQSGSVLFFL   60 (113)
T ss_pred             CeeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHHH-----H--------HhHH---HH--HHHHHHHHHHHHHHH
Confidence            57889999999999999975 355443331 321111110     0        1122   22  234444455677889


Q ss_pred             HhhccChhhHHHhh-ccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHH
Q 028591           81 SMKYVHPTFMTAVV-NTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV  136 (207)
Q Consensus        81 gl~~t~a~~a~il~-~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~l  136 (207)
                      .+..++-+.+.-+. ++.=++|++.++++.+|..++      +.++|+.+.+.|+.+
T Consensus        61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~------~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISR------RTWLGMALILAGVAL  111 (113)
T ss_pred             HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccch------hHHHHHHHHHcCeee
Confidence            99999999998886 678888888888777776644      359999999999865

Many members are annotated as potential transmembrane proteins.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.19  E-value=0.0022  Score=46.49  Aligned_cols=68  Identities=15%  Similarity=0.203  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHhhccChhhH-HHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028591           66 LSLLGVSLALNLYFASMKYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF  139 (207)
Q Consensus        66 ~gl~g~~~~~~~~~~gl~~t~a~~a-~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~  139 (207)
                      ..+.+..+.+.++..++++.+.+.| ++...+--+.+.+.++++++|++|+.      +++|+.+.++|++.+..
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            4566667778888999999999988 45566777888999999999999875      59999999999998863

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.16  E-value=0.012  Score=42.64  Aligned_cols=65  Identities=14%  Similarity=0.094  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHhhccChhhH-HHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           68 LLGVSLALNLYFASMKYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        68 l~g~~~~~~~~~~gl~~t~a~~a-~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      +.+....+.+...++++.+.+.| ++....--+.+.+.+.+++||++|+.      |++|+.+.+.|++.+.
T Consensus        42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            44556677888899999999988 66667888888999999999999865      6999999999998763

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.16  E-value=0.0095  Score=51.61  Aligned_cols=167  Identities=17%  Similarity=0.176  Sum_probs=102.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHH--HHhhc---cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAY--FLERK---IRPKLTLAVFLEIFLLSLLGVSLALN   76 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~--~~~~~---~~~~~~~~~~~~~~~~gl~g~~~~~~   76 (207)
                      +++.++||++++-.|+.-+.+..-+..+ .-+ ++ -++.|+..  +..+.   .....+.+.+..-++.|++- ...|.
T Consensus        13 ~i~~~~~GS~~~p~K~~k~w~wE~~W~v-~gi-~~-wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W-~iG~i   88 (345)
T PRK13499         13 LIGGASSGSFYAPFKKVKKWSWETMWSV-GGI-FS-WLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALW-GIGGI   88 (345)
T ss_pred             HHHHHHhhcccccccccCCCchhHHHHH-HHH-HH-HHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHH-Hhhhh
Confidence            5788999999999998422222222221 111 11 11122111  11110   01124566676767777764 56799


Q ss_pred             HHHHHhhccChhhHHHh-hccchHHHHHHHHHhhhccc---cccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCC
Q 028591           77 LYFASMKYVHPTFMTAV-VNTIPCMTFIIAVVFRLEIV---DVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAP  152 (207)
Q Consensus        77 ~~~~gl~~t~a~~a~il-~~~~P~~~~ila~~~~~e~~---~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~  152 (207)
                      .++.++++.+.+.+--+ ..++=+...++..++++|=-   +.++  +..-.+|+++.++|+++.........+      
T Consensus        89 ~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag~~k~~------  160 (345)
T PRK13499         89 TYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAGQLKER------  160 (345)
T ss_pred             hHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhhhhccc------
Confidence            99999999999988554 45777888888888888643   3322  445678999999999987642111110      


Q ss_pred             ccCCCC--CCCcchHHHHHHHHHHHHHHHHHH
Q 028591          153 IHLGTN--SVHENWLKGSILTVASCILWSSFY  182 (207)
Q Consensus       153 ~~~~~~--~~~~~~~~G~ll~l~aa~~~a~y~  182 (207)
                        +...  +++.+...|.++.+.|.+.++.|+
T Consensus       161 --~~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        161 --KMGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             --ccccccccccchHhHHHHHHHHHHHHHHHH
Confidence              0000  123456789999999999999999

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.11  E-value=0.0024  Score=47.05  Aligned_cols=69  Identities=17%  Similarity=0.159  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhhH-HHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028591           65 LLSLLGVSLALNLYFASMKYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF  139 (207)
Q Consensus        65 ~~gl~g~~~~~~~~~~gl~~t~a~~a-~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~  139 (207)
                      +..+.+....+.++..++++.+.+.| ++...+--+.+.+++.++++|++|+.      |++|+.+.++|++.+..
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence            34566667778889999999999988 44456788888999999999999875      69999999999988864

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.99  E-value=0.0033  Score=45.10  Aligned_cols=68  Identities=21%  Similarity=0.257  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhhH-HHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           65 LLSLLGVSLALNLYFASMKYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        65 ~~gl~g~~~~~~~~~~gl~~t~a~~a-~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      ++.+.+....+.+.-.++++.+.+.| ++....--+.+.+.++++++|+++.      .|++|+.+.++|++.+.
T Consensus        34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~------~~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSL------IKLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCH------HHHHHHHHHHHHHHHhh
Confidence            34455667778888999999999988 6777788889999999999999976      46999999999998875

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.97  E-value=0.033  Score=46.82  Aligned_cols=126  Identities=14%  Similarity=0.151  Sum_probs=88.8

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            3 LLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKI--RPKLTLAVFLEIFLLSLLGVSLALNLYFA   80 (207)
Q Consensus         3 ~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~gl~g~~~~~~~~~~   80 (207)
                      ..++-||.++..-|..   ++|+.+=...-.+.-...-+.+.++.....  ...-+.+++..+...|... .+.-.+|..
T Consensus       155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf~~  230 (293)
T COG2962         155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLFAA  230 (293)
T ss_pred             HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHH-HHHHHHHHH
Confidence            3466788888888864   367665544444333333222222222211  0112456777788888874 678899999


Q ss_pred             HhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           81 SMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        81 gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      |-+..+-+.-+++++..|.+..+++.++++|+++..      +..+-+..-.|.++..
T Consensus       231 aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~  282 (293)
T COG2962         231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS  282 (293)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999764      5788888888876654

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.87  E-value=0.0058  Score=43.93  Aligned_cols=65  Identities=12%  Similarity=0.093  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHhhccChhhH-HHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           68 LLGVSLALNLYFASMKYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        68 l~g~~~~~~~~~~gl~~t~a~~a-~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      +.+....+.+...++++.|.+.| ++...+--+.+.+.+.+++||++|+.      |++|+.+.++|++.+.
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence            55566778888899999999988 66667888889999999999999875      6999999999999875

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.78  E-value=0.018  Score=43.46  Aligned_cols=123  Identities=17%  Similarity=0.259  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHh----CCC-CchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028591            8 VASVYFLTEDSFN----QGL-NPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASM   82 (207)
Q Consensus         8 wg~~~i~~K~~l~----~~~-~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl   82 (207)
                      -++..+..+.+++    +.. ||+.-++.-+..+.+.+..+....+++..++.+..+| +...-|++| ..+..+....+
T Consensus         8 ~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~-w~~lGG~lG-~~~V~~~~~~v   85 (138)
T PF04657_consen    8 LAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPW-WAYLGGLLG-VFFVLSNIILV   85 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCCh-HHhccHHHH-HHHHHHHHHHh
Confidence            3444444444443    224 4999999999999999887776654432222222233 334477777 45677788889


Q ss_pred             hccChhhHHHhhc-cchHHHHHHHHH--hhhccccccCCCCchhhhhHHHHHHhHHH
Q 028591           83 KYVHPTFMTAVVN-TIPCMTFIIAVV--FRLEIVDVRSPRGIAKILGTLASLVGVMV  136 (207)
Q Consensus        83 ~~t~a~~a~il~~-~~P~~~~ila~~--~~~e~~~~~~~~~~~~~~G~~l~~~Gv~l  136 (207)
                      ...+++.+..+.- -+=+...++-++  +..||    ++.+..|++|+++.++|+.+
T Consensus        86 p~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~----~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   86 PRLGAALTTILIVAGQLIASLLIDHFGLFGAPK----RPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHccccCCCC----CCCCHHHHHHHHHHHHHHhC
Confidence            9999998876654 444444444443  21122    22345689999999999863

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.64  E-value=0.0063  Score=52.08  Aligned_cols=127  Identities=16%  Similarity=0.200  Sum_probs=91.4

Q ss_pred             hHHHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHHHHH-HHHHHHhhccC---C--CCCHHHHHHHHHHHHHHHHHH
Q 028591            4 LQICVASVYFLTEDSF---NQGLNPHIYVTYRHAAGSLMMF-PFAYFLERKIR---P--KLTLAVFLEIFLLSLLGVSLA   74 (207)
Q Consensus         4 ~~~~wg~~~i~~K~~l---~~~~~p~~l~~~R~~~a~~~l~-~~~~~~~~~~~---~--~~~~~~~~~~~~~gl~g~~~~   74 (207)
                      ..+..+.-.++.|..+   ++.+|++.+..+---++..+++ |+....+....   .  ..+.. .....+.+++ ....
T Consensus       171 s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sv~-~f~~  248 (316)
T KOG1441|consen  171 SNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILLLNSVL-AFLL  248 (316)
T ss_pred             HHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHHHHHHH-HHHH
Confidence            4456667778888888   3469999999999999999998 88766544322   1  12222 3334444544 4677


Q ss_pred             HHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           75 LNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        75 ~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      |..-|+.+..++|-.=++.-..==.++...++++++|+++..      +.+|.++++.|+.+=+
T Consensus       249 Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  249 NLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence            888999999999988777766444455567888888888765      5999999999998754

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.60  E-value=0.016  Score=48.53  Aligned_cols=125  Identities=10%  Similarity=0.067  Sum_probs=80.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFAS   81 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~g   81 (207)
                      +..++.+..+.++.|..   ++||.+... -+.++.++-..+.....++.  ..+++.+ .-.+-|++- ...+.+++.+
T Consensus       144 l~stigy~~Y~~~~~~~---~~~~~~~~l-PqaiGm~i~a~i~~~~~~~~--~~~k~~~-~nil~G~~w-~ignl~~~is  215 (269)
T PF06800_consen  144 LISTIGYWIYSVIPKAF---HVSGWSAFL-PQAIGMLIGAFIFNLFSKKP--FFEKKSW-KNILTGLIW-GIGNLFYLIS  215 (269)
T ss_pred             HHHHHHHHHHHHHHHhc---CCChhHhHH-HHHHHHHHHHHHHhhccccc--ccccchH-HhhHHHHHH-HHHHHHHHHh
Confidence            35567777788887763   478877665 33444333322211111111  1223333 335566653 4567889999


Q ss_pred             hhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHH
Q 028591           82 MKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV  136 (207)
Q Consensus        82 l~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~l  136 (207)
                      .+..+.+.+=.+..+.+++..+.+.+++||+=++|+  -...++|+++.++|.++
T Consensus       216 ~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke--~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  216 AQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKE--MIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHhccchhhhhHHhHHHHHHHhhhheEEEecCchhh--HHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999866554  23455677777777653

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.40  E-value=0.19  Score=42.78  Aligned_cols=155  Identities=18%  Similarity=0.161  Sum_probs=103.1

Q ss_pred             HHHHHHHHHhC-CCCchHHH-HHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChh
Q 028591           11 VYFLTEDSFNQ-GLNPHIYV-TYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPT   88 (207)
Q Consensus        11 ~~i~~K~~l~~-~~~p~~l~-~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~   88 (207)
                      ..+.-|.++.+ +.|...++ .++.+...+.+...-..+. -+.+++++++.+..+-..++- .+....-..+++|.+..
T Consensus        27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~l-v~~~~l~~~~~kk~~P~~~lf-~~~i~t~~~slk~lnVp  104 (314)
T KOG1444|consen   27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGL-VNFRPLDLRTAKKWFPVSLLF-VGMLFTGSKSLKYLNVP  104 (314)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhce-eecCCcChHHHHHHccHHHHH-HHHHHHccccccccCch
Confidence            34556777754 33333222 3777776666554321111 112346677666666666653 33444455789999999


Q ss_pred             hHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHH
Q 028591           89 FMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGS  168 (207)
Q Consensus        89 ~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~  168 (207)
                      .-+++=+..|+++++.-..+++.+++.      ..+..+....+|.......+                  ...+ ..|-
T Consensus       105 m~tv~kn~tii~~ai~E~lf~~~~~~~------~v~~Sv~~m~~~s~~~~~~d------------------~sf~-~~gY  159 (314)
T KOG1444|consen  105 MFTVFKNLTIILTAIGEVLFFGKRPSN------KVWASVFAMIIGSVAAAFTD------------------LSFN-LRGY  159 (314)
T ss_pred             HHHHHhhchHHHHHHhHHhhcCcCchh------hHHHHHHHHHHHHHhhcccc------------------ceec-chhH
Confidence            999999999999999999998866654      45777888777776644211                  0111 3489


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCc
Q 028591          169 ILTVASCILWSSFYIMQVSNPSTS  192 (207)
Q Consensus       169 ll~l~aa~~~a~y~v~~k~~~~~~  192 (207)
                      .+.+...++-+.|.+..|+..+..
T Consensus       160 ~w~~~n~~~~a~~~v~~kk~vd~~  183 (314)
T KOG1444|consen  160 SWALANCLTTAAFVVYVKKSVDSA  183 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999987644

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.25  E-value=0.014  Score=40.94  Aligned_cols=58  Identities=16%  Similarity=0.144  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHhhccChhhH-HHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHH
Q 028591           66 LSLLGVSLALNLYFASMKYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLA  129 (207)
Q Consensus        66 ~gl~g~~~~~~~~~~gl~~t~a~~a-~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l  129 (207)
                      ..+.+....+.++..++++.+.+.| ++...+-.+.+.+.+.++++|++|.+|      +.|+.+
T Consensus        34 ~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l   92 (93)
T PF00893_consen   34 LAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence            3444666777899999999999999 666778999999999999999998764      777764

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.13  E-value=0.0078  Score=51.23  Aligned_cols=68  Identities=19%  Similarity=0.303  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028591           66 LSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF  139 (207)
Q Consensus        66 ~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~  139 (207)
                      .|+.-..+.+.+.+.++.+.+++.-+-+..+.-++..+++..++|||++++      .+.|+.+++.|..++..
T Consensus        55 ~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   55 IGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE
Confidence            444444566778889999999999999999999999999999999999765      58999999999987654

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=95.76  E-value=0.0057  Score=50.87  Aligned_cols=120  Identities=12%  Similarity=0.053  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhh
Q 028591           10 SVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTF   89 (207)
Q Consensus        10 ~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~   89 (207)
                      ..++..|+ +.+..+.+....+=..++.+.-+..+..-..-.. +..+||++.+..+|++| +++|.+...|+|.--|+-
T Consensus       205 svyIilR~-iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~l-P~cgkdr~l~~~lGvfg-figQIllTm~lQiErAGp  281 (346)
T KOG4510|consen  205 SVYIILRY-IGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQL-PHCGKDRWLFVNLGVFG-FIGQILLTMGLQIERAGP  281 (346)
T ss_pred             hHHHHHHH-hhccccEEEEehHHHHHHHHHHHHHHhhccceec-CccccceEEEEEehhhh-hHHHHHHHHHhhhhccCC
Confidence            44555554 4344666655555555555444433322121122 34578888888899998 688999999999999999


Q ss_pred             HHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           90 MTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        90 a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      .+++.++.-++.++.-.++++|-+++      +.|.|.++.+...+...
T Consensus       282 vaim~~~dvvfAf~wqv~ff~~~Pt~------ws~~Ga~~vvsS~v~~a  324 (346)
T KOG4510|consen  282 VAIMTYTDVVFAFFWQVLFFGHWPTI------WSWVGAVMVVSSTVWVA  324 (346)
T ss_pred             eehhhHHHHHHHHHHHHHHhcCCChH------HHhhceeeeehhHHHHH
Confidence            99999999999999999999998765      45888887776665544

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.31  E-value=0.066  Score=43.96  Aligned_cols=106  Identities=20%  Similarity=0.146  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCC
Q 028591           70 GVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLK  149 (207)
Q Consensus        70 g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~  149 (207)
                      ...+.+...+.++||.+=-.+-+=-++-|+=+++++.++.+++-+|+      |...+++.++|+.+.. ++.+...   
T Consensus        94 sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~~Kv~---  163 (337)
T KOG1580|consen   94 SYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKENKVG---  163 (337)
T ss_pred             HHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-ccccccC---
Confidence            45667778889999998777777678999999999999988887664      6899999999998764 4422211   


Q ss_pred             CCCccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcC
Q 028591          150 GAPIHLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSF  193 (207)
Q Consensus       150 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~  193 (207)
                              ....+....|.++.++|---=+.-...|+|..+.|.
T Consensus       164 --------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq  199 (337)
T KOG1580|consen  164 --------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQ  199 (337)
T ss_pred             --------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhc
Confidence                    112344568999999998888888888988887775

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=94.71  E-value=0.2  Score=43.66  Aligned_cols=131  Identities=15%  Similarity=0.262  Sum_probs=94.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHHHHHHHHHHHhhccCC--C-CCHHHHHHHHHHHHHHHHHHH
Q 028591            2 ILLQICVASVYFLTEDSFNQ---GLNPHIYVTYRHAAGSLMMFPFAYFLERKIRP--K-LTLAVFLEIFLLSLLGVSLAL   75 (207)
Q Consensus         2 ~~~~~~wg~~~i~~K~~l~~---~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~gl~g~~~~~   75 (207)
                      ++.++.+|.+.++.|.-.++   .+|--.+-.+=-++..++++|..+...+-..+  . .+......++..+++|.++.-
T Consensus       253 L~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSD  332 (416)
T KOG2765|consen  253 LLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSD  332 (416)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHH
Confidence            35788999999999987753   36655666666777888888776653322211  1 123445567888999999999


Q ss_pred             HHHHHHhhccChhhHHHhhc-cchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028591           76 NLYFASMKYVHPTFMTAVVN-TIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF  139 (207)
Q Consensus        76 ~~~~~gl~~t~a~~a~il~~-~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~  139 (207)
                      .++..|+-.|++-.+++=+. ++|+ .++.-.++.+.++      +...++|.+..++|-+.++.
T Consensus       333 ylW~~a~~lTs~Lv~TlgmSltIPL-A~~aD~l~k~~~~------S~~~iiGsi~Ifv~Fv~vn~  390 (416)
T KOG2765|consen  333 YLWAKAVLLTSPLVVTLGMSLTIPL-AMFADVLIKGKHP------SALYIIGSIPIFVGFVIVNI  390 (416)
T ss_pred             HHHHHHHHhccchhheeeeeEeeeH-HHHHHHHHcCCCC------CHHHHHHHHHHHHHHhheec
Confidence            99999999999999988776 6665 4455555555555      45679999999999888764

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.65  E-value=0.062  Score=44.11  Aligned_cols=73  Identities=22%  Similarity=0.291  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHH
Q 028591           58 AVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVI  137 (207)
Q Consensus        58 ~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll  137 (207)
                      ..|..+.++++.+ ++.|.+.|.-+.+-+|-..+++..+--+|+++.+.+++..+++.|      +|+|..+.+.|...=
T Consensus       239 ~~~~~l~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  239 YVFWDLTLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTAD  311 (337)
T ss_pred             HHHHHHHHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhH
Confidence            3456677788875 688999999999999999999999999999999999999999765      599999999998653

>PRK13499 rhamnose-proton symporter; Provisional

Probab=94.46  E-value=2.4  Score=36.90  Aligned_cols=134  Identities=11%  Similarity=0.074  Sum_probs=74.6

Q ss_pred             hhHHHHHHHH-------HHHHHHHhCCCCchHHHHHHHH---HHHHHHH-HHHHHHhhc-cC------CCCCHHHHHHH-
Q 028591            3 LLQICVASVY-------FLTEDSFNQGLNPHIYVTYRHA---AGSLMMF-PFAYFLERK-IR------PKLTLAVFLEI-   63 (207)
Q Consensus         3 ~~~~~wg~~~-------i~~K~~l~~~~~p~~l~~~R~~---~a~~~l~-~~~~~~~~~-~~------~~~~~~~~~~~-   63 (207)
                      ++.+..+.+.       +..+.+.+.+.+|.....-.+.   +++.+.- .++.++.+| +.      ...+++++.+- 
T Consensus       181 isgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~  260 (345)
T PRK13499        181 MSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNV  260 (345)
T ss_pred             HHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHH
Confidence            3445555555       4555544456787766555554   4544443 223222111 11      11122233333 


Q ss_pred             ---HHHHHHHHHHHHHHHHHHhhccChhhHHH---hh-ccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHH
Q 028591           64 ---FLLSLLGVSLALNLYFASMKYVHPTFMTA---VV-NTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMV  136 (207)
Q Consensus        64 ---~~~gl~g~~~~~~~~~~gl~~t~a~~a~i---l~-~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~l  136 (207)
                         .+.|++ -...+.+|.++-+..+...+.+   +. .+.-++..+.+. ++||+=+-.++..+..++|+++.++|+.+
T Consensus       261 l~~~l~G~~-W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~l  338 (345)
T PRK13499        261 LLSALAGVM-WYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANI  338 (345)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHH
Confidence               334443 2455667888888776655544   44 455566666666 58998663334456678899999999988


Q ss_pred             Hh
Q 028591          137 IA  138 (207)
Q Consensus       137 l~  138 (207)
                      +.
T Consensus       339 ig  340 (345)
T PRK13499        339 VG  340 (345)
T ss_pred             Hh
Confidence            75

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.16  E-value=0.073  Score=44.60  Aligned_cols=142  Identities=15%  Similarity=0.134  Sum_probs=78.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhh----ccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccch
Q 028591           25 PHIYVTYRHAAGSLMMFPFAYFLER----KIRPK--LTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIP   98 (207)
Q Consensus        25 p~~l~~~R~~~a~~~l~~~~~~~~~----~~~~~--~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P   98 (207)
                      |....+++.+....+-..+.....+    ...++  ++.+..+.+.=+.+.- .+.-.+-+..++|.+.+.=-+=-.+.-
T Consensus        61 plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~yVgVaFYyvgRsLtt  139 (347)
T KOG1442|consen   61 PLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLKYVGVAFYYVGRSLTT  139 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehhhcceEEEEeccchhh
Confidence            7788888888876666555443222    11122  3333222222222211 111122234566665553322234677


Q ss_pred             HHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHHHHHHHHH
Q 028591           99 CMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILW  178 (207)
Q Consensus        99 ~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~  178 (207)
                      +|+++++++++|+|-+...      ..+..+.+.|-.+     |-+          +|+.++.-. ..|.++.+.|.++-
T Consensus       140 vFtVlLtyvllkqkTs~~~------~~~C~lIi~GF~l-----Gvd----------qE~~~~~ls-~~GvifGVlaSl~v  197 (347)
T KOG1442|consen  140 VFTVLLTYVLLKQKTSFFA------LGCCLLIILGFGL-----GVD----------QEGSTGTLS-WIGVIFGVLASLAV  197 (347)
T ss_pred             hHHHHhHHhhccccccccc------ceeehhheehhee-----ccc----------cccccCccc-hhhhHHHHHHHHHH
Confidence            8999999999999965432      3344444444322     111          111122233 37999999999999


Q ss_pred             HHHHHHhhhcc
Q 028591          179 SSFYIMQVSNP  189 (207)
Q Consensus       179 a~y~v~~k~~~  189 (207)
                      |...+..||..
T Consensus       198 Alnaiytkk~l  208 (347)
T KOG1442|consen  198 ALNAIYTKKVL  208 (347)
T ss_pred             HHHHHhhheec
Confidence            99999998654

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.33  E-value=0.059  Score=45.92  Aligned_cols=68  Identities=21%  Similarity=0.296  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028591           66 LSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF  139 (207)
Q Consensus        66 ~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~  139 (207)
                      .|++-..++...=|.+..+.+++..+-+-++.-+...+++..++|||++++      -.+|+.+|++|..+++.
T Consensus        69 ~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~  136 (335)
T KOG2922|consen   69 AGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI  136 (335)
T ss_pred             HHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE
Confidence            455544555666667888889999998999999999999999999999875      48899999999887764

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=91.86  E-value=0.013  Score=48.28  Aligned_cols=164  Identities=13%  Similarity=0.183  Sum_probs=95.5

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028591            4 LQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMK   83 (207)
Q Consensus         4 ~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~   83 (207)
                      =++.||+...+....   +=+|.+=..- ..+++++.....++.   .+|..+.+.+.--++-|.+ -...|...+-+.+
T Consensus        10 P~l~WGsip~v~~k~---GG~p~qQ~lG-tT~GALifaiiv~~~---~~p~~T~~~~iv~~isG~~-Ws~GQ~~Qfka~~   81 (288)
T COG4975          10 PALGWGSIPLVANKF---GGKPYQQTLG-TTLGALIFAIIVFLF---VSPELTLTIFIVGFISGAF-WSFGQANQFKAIQ   81 (288)
T ss_pred             HHHHhcccceeeeec---CCChhHhhhh-ccHHHHHHHHHHhee---ecCccchhhHHHHHHhhhH-hhhhhhhhhhhee
Confidence            356788776665432   2345443322 233444444433332   2244566655555555554 3567999999999


Q ss_pred             ccChhhHHHhhc-cchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCc
Q 028591           84 YVHPTFMTAVVN-TIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHE  162 (207)
Q Consensus        84 ~t~a~~a~il~~-~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~  162 (207)
                      +.+.++|--+.+ ++-+-+.+.+.+.++|--+..+.  ..-.+++++.++|+.+-+..+.+     |++      .++.+
T Consensus        82 ~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs~~~~~-----nk~------~~~~~  148 (288)
T COG4975          82 LIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTSKQDRN-----NKE------EENPS  148 (288)
T ss_pred             eeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEeeeeccc-----ccc------ccChH
Confidence            999999987764 77777888888999997654331  11223445556666554321110     111      12334


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhhc
Q 028591          163 NWLKGSILTVASCILWSSFYIMQVSN  188 (207)
Q Consensus       163 ~~~~G~ll~l~aa~~~a~y~v~~k~~  188 (207)
                      +...|...++.|.+.|-.|.++.+-.
T Consensus       149 n~kkgi~~L~iSt~GYv~yvvl~~~f  174 (288)
T COG4975         149 NLKKGIVILLISTLGYVGYVVLFQLF  174 (288)
T ss_pred             hhhhheeeeeeeccceeeeEeeeccc
Confidence            45568888888888888887775443

>TIGR00803 nst UDP-galactose transporter

Probab=91.79  E-value=0.45  Score=38.25  Aligned_cols=58  Identities=10%  Similarity=0.010  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHH
Q 028591           72 SLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVM  135 (207)
Q Consensus        72 ~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~  135 (207)
                      ...+.+..+.++|.++..-+....+.++++.+++.++++|+++..      +++|..+.+.|+.
T Consensus       163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~  220 (222)
T TIGR00803       163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF  220 (222)
T ss_pred             HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence            445566778899999999999999999999999999999999765      5899999888864

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=91.26  E-value=0.5  Score=39.73  Aligned_cols=134  Identities=15%  Similarity=0.153  Sum_probs=81.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh-hhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHH
Q 028591           53 PKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHP-TFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASL  131 (207)
Q Consensus        53 ~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a-~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~  131 (207)
                      ++.+.|++.....+=+    ..+..-+.++++-=+ ..=-++-+-.++-++++++++.++|-+.+      |...+++.-
T Consensus        60 ~kiplk~Y~i~V~mFF----~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iT  129 (330)
T KOG1583|consen   60 PKIPLKDYAITVAMFF----IVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMIT  129 (330)
T ss_pred             CCCchhhhheehheee----eeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhh
Confidence            3456666544333222    223334455554211 12223335678889999999998887665      589999999


Q ss_pred             HhHHHHhhhcCCCCCCCCCCCc-cCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCcCCcee
Q 028591          132 VGVMVIAFYKGPAVPSLKGAPI-HLGTNSVHENWLKGSILTVASCILWSSFYIMQVSNPSTSFRFFS  197 (207)
Q Consensus       132 ~Gv~ll~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~G~ll~l~aa~~~a~y~v~~k~~~~~~~~~~~  197 (207)
                      +|+++-...+.++.+. ..+.. +++.......|..|..++..+-+.-|...++|+.+-|||.....
T Consensus       130 iGiiIcTl~s~~d~~~-~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~  195 (330)
T KOG1583|consen  130 IGIIICTLFSSKDGRS-KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWK  195 (330)
T ss_pred             hhheeEEeecCcchhh-hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence            9998765444333221 00000 01111223357789999999999999999999999888875443

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=91.09  E-value=5.6  Score=33.96  Aligned_cols=148  Identities=17%  Similarity=0.108  Sum_probs=92.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhc--cchHHH
Q 028591           24 NPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVN--TIPCMT  101 (207)
Q Consensus        24 ~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~--~~P~~~  101 (207)
                      +|..+.+..-+.+.++-.  .+...++.. ...++.|..+...++.. .+...+.+.+++|.+=-.-.+==+  ++|+  
T Consensus        50 ~~~fL~~~q~l~~~~~s~--~~l~~~k~~-~~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPV--  123 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSY--AMLKWWKKE-LSGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPV--  123 (327)
T ss_pred             ccHHHHHHHHHHHHHHHH--HHHhccccc-CCCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHH--
Confidence            356666666666654442  223222222 22345677778888875 566778899999987333322222  6776  


Q ss_pred             HHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 028591          102 FIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIHLGTNSVHENWLKGSILTVASCILWSSF  181 (207)
Q Consensus       102 ~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~y  181 (207)
                      ++++.+..+.|.+..      |.+-..+.-.|+.+....+..+ ...         ..+.++...|..++...-+.=+.-
T Consensus       124 mlmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-s~~---------~~g~~ns~~G~~Ll~~~L~fDgfT  187 (327)
T KOG1581|consen  124 MLMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-SSS---------KSGRENSPIGILLLFGYLLFDGFT  187 (327)
T ss_pred             HHHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-Ccc---------ccCCCCchHhHHHHHHHHHHHhhH
Confidence            468888898888754      4666666667876544332221 100         122344568999999998888888


Q ss_pred             HHHhhhccCCcC
Q 028591          182 YIMQVSNPSTSF  193 (207)
Q Consensus       182 ~v~~k~~~~~~~  193 (207)
                      +..|+++.++|.
T Consensus       188 n~tQd~lf~~~k  199 (327)
T KOG1581|consen  188 NATQDSLFKKYK  199 (327)
T ss_pred             HhHHHHHhccCC
Confidence            999999988664

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.77  E-value=5.1  Score=30.62  Aligned_cols=110  Identities=14%  Similarity=0.155  Sum_probs=62.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHh-hccchHHHH
Q 028591           24 NPHIYVTYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAV-VNTIPCMTF  102 (207)
Q Consensus        24 ~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il-~~~~P~~~~  102 (207)
                      +|+.-.+..+..+.+.+..+.+..+++.......+.=+|...-|++|. .+-..-.......+++....+ ..-+=+..+
T Consensus        33 spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa-~~vt~s~~l~p~lGa~~t~~l~i~gQli~gl  111 (150)
T COG3238          33 SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGA-IFVTSSILLAPRLGAATTIALVIAGQLIMGL  111 (150)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhh-hhhhhhHHhccchhHHHHHHHHHHHHHHHHH
Confidence            599999999999999988887763332211111111123445556663 344444455556666654433 333333333


Q ss_pred             HHHHHh-hhccccccCCCCchhhhhHHHHHHhHHHH
Q 028591          103 IIAVVF-RLEIVDVRSPRGIAKILGTLASLVGVMVI  137 (207)
Q Consensus       103 ila~~~-~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll  137 (207)
                      ++-.+= ++++   +++++..+++|+++.++|++++
T Consensus       112 liD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238         112 LIDHFGWFGVP---KRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             HHHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHh
Confidence            333221 2221   2445778899999999995554

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=90.75  E-value=0.3  Score=40.40  Aligned_cols=80  Identities=13%  Similarity=0.161  Sum_probs=56.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhH
Q 028591           55 LTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGV  134 (207)
Q Consensus        55 ~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv  134 (207)
                      .++..|.. .+-|++- ...+.+++.+-+..+.+.+=.+..+--+...+-+.+++|||=+.|++  ...++|+++.++|+
T Consensus       205 ~~K~t~~n-ii~G~~W-a~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvga  280 (288)
T COG4975         205 FNKYTWLN-IIPGLIW-AIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGA  280 (288)
T ss_pred             hHHHHHHH-HhhHHHH-HhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHh
Confidence            34444443 5566654 45678888888877776665566666666777788999999887764  45677999999998


Q ss_pred             HHHh
Q 028591          135 MVIA  138 (207)
Q Consensus       135 ~ll~  138 (207)
                      .++.
T Consensus       281 i~lg  284 (288)
T COG4975         281 ILLG  284 (288)
T ss_pred             hhhh
Confidence            8764

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=90.44  E-value=1.2  Score=37.82  Aligned_cols=109  Identities=13%  Similarity=0.186  Sum_probs=82.1

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHhhccCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHhhcc
Q 028591           22 GLNPHIYVTYRHAAGSLMMFPFAYFLERKIRP-----KLTLAVFLEIFLLSLLGVSLALNLYFASMKYVHPTFMTAVVNT   96 (207)
Q Consensus        22 ~~~p~~l~~~R~~~a~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~gl~g~~~~~~~~~~gl~~t~a~~a~il~~~   96 (207)
                      .+++..+.++-.++.++.-...... ....++     +.+++-++.+++.+.+| +..|.+.++-++.-++-.-+.++.+
T Consensus       199 k~s~~~mM~~vNLf~~i~~~~~li~-qg~~~~av~F~~~hp~~~~Di~l~s~~g-avGQ~FI~~TI~~FGslt~t~I~tt  276 (327)
T KOG1581|consen  199 KVSSLHMMFGVNLFSAILNGTYLIL-QGHLLPAVSFIKEHPDVAFDILLYSTCG-AVGQLFIFYTIERFGSLTFTTIMTT  276 (327)
T ss_pred             CccHhHHHHHHHHHHHHHHHHhhhc-CCCCchHHHHHHcChhHHHHHHHHHHhh-hhhhheehhhHhhcccHHHHHHHHH
Confidence            5788888888877776665544221 221111     23456677888899987 5678888899998888888888888


Q ss_pred             chHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHh
Q 028591           97 IPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIA  138 (207)
Q Consensus        97 ~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~  138 (207)
                      ==++..+++.+.++.++++.|      |+|..+.+.|..+=+
T Consensus       277 Rk~~si~lS~i~f~h~~s~~q------~~g~~iVFg~i~l~~  312 (327)
T KOG1581|consen  277 RKMVSIMLSCIVFGHPLSSEQ------WLGVLIVFGGIFLEI  312 (327)
T ss_pred             HHHHHHHHHHHHhCCccchhh------ccCeeeehHHHHHHH
Confidence            888999999999999998875      788999998887643

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=86.39  E-value=17  Score=31.57  Aligned_cols=169  Identities=17%  Similarity=0.213  Sum_probs=87.7

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHhhc-----cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028591            3 LLQICVASVYFLTEDSFNQGLNPHIYVTYRHAAGSLMMFPFAYFLERK-----IRPKLTLAVFLEIFLLSLLGVSLALNL   77 (207)
Q Consensus         3 ~~~~~wg~~~i~~K~~l~~~~~p~~l~~~R~~~a~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~gl~g~~~~~~~   77 (207)
                      +..++-|+.++-.|+.-+.....+.++   +.+-+-+.+|+..-...-     .....+.+.+...++.|++=. .....
T Consensus        14 iGg~~~~sfy~P~kkvk~WsWEs~Wlv---~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lWG-IGglt   89 (344)
T PF06379_consen   14 IGGFASGSFYVPFKKVKGWSWESYWLV---QGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVLWG-IGGLT   89 (344)
T ss_pred             HHHHHhhhhccchhhcCCccHHHHHHH---HHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHHh-cchhh
Confidence            345566777777776533233333333   333344445554321110     001234456666777777632 34566


Q ss_pred             HHHHhhccChhhH-HHhhccchHHHHHHHHHhhhcccc--ccCCCCchhhhhHHHHHHhHHHHhhhcCCCCCCCCCCCcc
Q 028591           78 YFASMKYVHPTFM-TAVVNTIPCMTFIIAVVFRLEIVD--VRSPRGIAKILGTLASLVGVMVIAFYKGPAVPSLKGAPIH  154 (207)
Q Consensus        78 ~~~gl~~t~a~~a-~il~~~~P~~~~ila~~~~~e~~~--~~~~~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~  154 (207)
                      |=.+++|.+.+.. ++.+.+.-.+-.++--++.++ .+  ..++-++..++|++++++|+.+.... |...       +.
T Consensus        90 fGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~-~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A-G~~K-------e~  160 (344)
T PF06379_consen   90 FGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGT-FDELLATPSGQIVLLGVAVCLIGIAICGKA-GSMK-------EK  160 (344)
T ss_pred             HhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCc-ccccccCCCchhhhhHHHHHHHHHHHHhHH-HHhh-------hh
Confidence            7778888877654 222333333333332223221 11  11223567789999999999887532 2110       00


Q ss_pred             CCC-CCCCcchHHHHHHHHHHHHHHHHHHHH
Q 028591          155 LGT-NSVHENWLKGSILTVASCILWSSFYIM  184 (207)
Q Consensus       155 ~~~-~~~~~~~~~G~ll~l~aa~~~a~y~v~  184 (207)
                      +.. .....+..+|.+..+.|.+--|.+++-
T Consensus       161 ~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g  191 (344)
T PF06379_consen  161 ELGEEAKEFNFKKGLIIAVLSGVMSACFNFG  191 (344)
T ss_pred             hhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            000 112234567999999988877777763

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=80.91  E-value=3.4  Score=29.67  Aligned_cols=113  Identities=19%  Similarity=0.194  Sum_probs=64.4

Q ss_pred             ChhhHHHHHHHHHHHHHHHhCCCCchHHH--HHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028591            1 MILLQICVASVYFLTEDSFNQGLNPHIYV--TYRHAAGSLMMFPFAYFLERKIRPKLTLAVFLEIFLLSLLGVSLALNLY   78 (207)
Q Consensus         1 ~~~~~~~wg~~~i~~K~~l~~~~~p~~l~--~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gl~g~~~~~~~~   78 (207)
                      |+.+.++||.+..+.|.+.. +.+..--.  -+|.+           .++.+.. -++++.+. -+++--.|    ..+|
T Consensus         8 lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~~-----------lqe~~tl-~l~w~Y~i-PFllNqcg----Saly   69 (125)
T KOG4831|consen    8 LVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMIA-----------LQEMKTL-FLNWEYLI-PFLLNQCG----SALY   69 (125)
T ss_pred             HHHHHHHHccccHHHHHHHh-hHhhccCchHHHHHH-----------HHHHHHH-HHhHHHHH-HHHHHHhh----HHHH
Confidence            46788999999999998753 33322111  11111           0111100 11222221 13333333    4567


Q ss_pred             HHHhhccChhhHHHhhc-cchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHH
Q 028591           79 FASMKYVHPTFMTAVVN-TIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVI  137 (207)
Q Consensus        79 ~~gl~~t~a~~a~il~~-~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll  137 (207)
                      |.-++.++-+.|.-+.+ +.=.|+.+.+..+ +|+..     +++.++|..+.+.|+.+.
T Consensus        70 ~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~-----g~~a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   70 YLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQ-----GGLALLGTSLIVFGIWLC  123 (125)
T ss_pred             HHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccc-----cceeehhhhHHhhhhhhe
Confidence            78888888887776554 5666777777765 45543     345688999998888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-06
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 34/126 (26%)

Query: 12  YFLTEDSFNQGLNP-------HIYVTYRHAAGSLM-----MFPFAY----FLERKIRPKL 55
           Y + +   +  L P       + ++ + H           +F   +    FLE+KIR   
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGH-HLKNIEHPERMTLFRMVFLDFRFLEQKIR-HD 510

Query: 56  TLAVFLEIFLLSLLGVSLALNLYFASMKYV---HPTFMTAVVNTIPCMTFIIAVVFRLEI 112
           + A      +L+ L     L  Y     Y+    P +   +VN I  + F    + ++E 
Sbjct: 511 STAWNASGSILNTLQQ---LKFY---KPYICDNDPKY-ERLVNAI--LDF----LPKIEE 557

Query: 113 VDVRSP 118
             + S 
Sbjct: 558 NLICSK 563

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.52
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.45

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.52  E-value=1.8e-07  Score=69.45  Aligned_cols=71  Identities=14%  Similarity=0.218  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhhHHHh-hccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhhh
Q 028591           64 FLLSLLGVSLALNLYFASMKYVHPTFMTAV-VNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAFY  140 (207)
Q Consensus        64 ~~~gl~g~~~~~~~~~~gl~~t~a~~a~il-~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~~  140 (207)
                      .++++++..+.+.+++.++++.+++.+..+ .++.|++++++++++++|++++.      +++|+++.++|++++...
T Consensus        33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence            467888889999999999999999999888 89999999999999999999876      499999999999998743

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.45  E-value=5.3e-07  Score=64.42  Aligned_cols=70  Identities=14%  Similarity=0.221  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhhHHHh-hccchHHHHHHHHHhhhccccccCCCCchhhhhHHHHHHhHHHHhh
Q 028591           64 FLLSLLGVSLALNLYFASMKYVHPTFMTAV-VNTIPCMTFIIAVVFRLEIVDVRSPRGIAKILGTLASLVGVMVIAF  139 (207)
Q Consensus        64 ~~~gl~g~~~~~~~~~~gl~~t~a~~a~il-~~~~P~~~~ila~~~~~e~~~~~~~~~~~~~~G~~l~~~Gv~ll~~  139 (207)
                      .+.++++..+++.++..++++.+.+.+..+ ..+.|+++.++++++++|+++..      +++|+.+.++|++.+..
T Consensus        33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            357777888899999999999999999877 79999999999999999999765      69999999999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00