Citrus Sinensis ID: 028628

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKGDKL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHccHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRmesgtepdidlaTITDRMAVKKAVQCGNVEDAIEKVndlnpeildtnpqLFFHLQQQRLIELIRNGKVEEALEFAQEelaprgeenQSFLEELERTVALLAFedvsncpvgdlLDISQRLKTASEVNAAILTsqshekgdkl
Flexible Loop (DISEMBL)
MSLFWIVIRQLAEIEAMAmskkvitreewekklndvkirkedmnKLVMNFLVTEGYVDAAEKFrmesgtepdidlaTITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAailtsqshekgdkl
Low Complexity Region (SEG)
MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVeealefaqeelaPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKGDKL
Disordered region (IsUnstruct)
**LFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEF**************FLEELERTVALLAFEDVSNCPVGDLLDISQRLKT********************
Disordered Region (DISOPRED)
***FWI*IRQ*************************VKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQS*******
Disordered Region (DISEMBL)
MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTS*********
Disordered Region (DISPRO)
*SLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQ********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLFWIVIRQLAEIEAMAMSKKVITxxxxxxxxxxxxxxxxxxxxxVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKGDKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q54X16	228	Glucose-induced degradati	yes	no	0.902	0.815	0.650	5e-67
A7SWD3	225	Glucose-induced degradati	N/A	no	0.888	0.813	0.524	3e-52
Q6PC55	228	Glucose-induced degradati	yes	no	0.898	0.811	0.540	1e-51
Q5ZKQ7	228	Glucose-induced degradati	yes	no	0.864	0.780	0.539	2e-51
Q32L52	228	Glucose-induced degradati	yes	no	0.864	0.780	0.533	2e-51
Q9D7M1	228	Glucose-induced degradati	yes	no	0.864	0.780	0.533	5e-51
Q9NWU2	228	Glucose-induced degradati	yes	no	0.864	0.780	0.533	9e-51
Q10446	240	Uncharacterized protein C	yes	no	0.834	0.716	0.373	3e-19
P69566	653	Ran-binding protein 9 OS=	no	no	0.441	0.139	0.347	2e-08
Q96S59	729	Ran-binding protein 9 OS=	no	no	0.441	0.124	0.347	2e-08

>sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2

 Score =  253 bits (647), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 121/186 (65%), Positives = 148/186 (79%)

Query: 21  KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITD 80
           KKVI+  EW+ KL +V I K D+NKLVMN+LV EGY +AA KF+ ES T+  +DLA+I D
Sbjct: 11  KKVISTSEWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLASIAD 70

Query: 81  RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQ 140
           RMA++ A+QCG+VE  IE VNDLNPEILDTNPQL+FHLQQQ+LIELIR G   EAL+FAQ
Sbjct: 71  RMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQ 130

Query: 141 EELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSH 200
           +ELAP+GEEN  FLEELE+T++LL FED +  P+  LLD SQR KTA E+N+AIL SQS 
Sbjct: 131 DELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQ 190

Query: 201 EKGDKL 206
           +K  KL
Sbjct: 191 DKDPKL 196

Dictyostelium discoideum (taxid: 44689)

>sp|A7SWD3|GID8_NEMVE Glucose-induced degradation protein 8 homolog OS=Nematostella vectensis GN=v1g247787 PE=3 SV=1

 Score =  204 bits (519), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/183 (52%), Positives = 139/183 (75%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
           + REEW +K+  ++ ++ +MN+L+M++LVTEGY +AAEKFR+ESGT+P   L ++ DR+ 
Sbjct: 7   VNREEWMEKIGKLRFQRAEMNRLIMDYLVTEGYKEAAEKFRIESGTQPTAPLDSLDDRIK 66

Query: 84  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143
           +++AVQ G++E A+   N LNP+ILD+N QL+FHLQQQRLIELIR   +E A+EFAQ + 
Sbjct: 67  IREAVQKGDLEQAVSMTNKLNPDILDSNQQLYFHLQQQRLIELIREKDIEAAVEFAQGQF 126

Query: 144 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKG 203
           + +G+E+  +LEELE+T+ALLAF++    P GDLL  SQR K ASE+NAAIL ++  +  
Sbjct: 127 SEQGQESGRYLEELEQTMALLAFDNPEESPFGDLLHTSQRQKVASELNAAILEAEHKKTQ 186

Query: 204 DKL 206
            KL
Sbjct: 187 PKL 189

Nematostella vectensis (taxid: 45351)

>sp|Q6PC55|GID8_DANRE Glucose-induced degradation protein 8 homolog OS=Danio rerio GN=gid8 PE=2 SV=1

 Score =  202 bits (515), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 142/187 (75%), Gaps = 2/187 (1%)

Query: 17  MAMSKKV--ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDID 74
           M+ S+K   IT+EEW  KLN+V I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP++D
Sbjct: 1   MSYSEKPEDITKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPNVD 60

Query: 75  LATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 134
           L ++ +R+ +++ V  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E 
Sbjct: 61  LDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEA 120

Query: 135 ALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAI 194
           ALEFAQ +LA +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+
Sbjct: 121 ALEFAQSQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAV 180

Query: 195 LTSQSHE 201
           L  ++ E
Sbjct: 181 LDYENRE 187

Danio rerio (taxid: 7955)

>sp|Q5ZKQ7|GID8_CHICK Glucose-induced degradation protein 8 homolog OS=Gallus gallus GN=GID8 PE=2 SV=1

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/178 (53%), Positives = 137/178 (76%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
           IT++EW +KLN++ I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 84  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 144 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 201
           A +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENRE 187

Gallus gallus (taxid: 9031)

>sp|Q32L52|GID8_BOVIN Glucose-induced degradation protein 8 homolog OS=Bos taurus GN=GID8 PE=2 SV=1

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 138/178 (77%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 84  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 144 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 201
           A +GEE++  L E+ERT+ALLAF++  + P GDLL++ QR K  SEVN A+L  ++ E
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENRE 187

Bos taurus (taxid: 9913)

>sp|Q9D7M1|GID8_MOUSE Glucose-induced degradation protein 8 homolog OS=Mus musculus GN=Gid8 PE=2 SV=1

 Score =  200 bits (509), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 135/178 (75%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 84  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 144 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 201
           A +GEE++  L E+ERT+ALLAF+     P GDLL + QR K  SEVN A+L  ++ E
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENRE 187

Mus musculus (taxid: 10090)

>sp|Q9NWU2|GID8_HUMAN Glucose-induced degradation protein 8 homolog OS=Homo sapiens GN=GID8 PE=1 SV=1

 Score =  199 bits (506), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 95/178 (53%), Positives = 134/178 (75%)

Query: 24  ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
           IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct: 10  ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query: 84  VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143
           +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  + E ALEFAQ +L
Sbjct: 70  IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query: 144 APRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHE 201
           A +GEE++  L E+ERT+ALLAF+     P GDLL   QR K  SEVN A+L  ++ E
Sbjct: 130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENRE 187

Homo sapiens (taxid: 9606)

>sp|Q10446|YDED_SCHPO Uncharacterized protein C12B10.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.13 PE=4 SV=1

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 103/182 (56%), Gaps = 10/182 (5%)

Query: 27  EEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKK 86
           E+WEK+   V I   D+N L++++LV +G  +AA+ F  E+          + +R+ + +
Sbjct: 20  EQWEKQTKSVHIDNSDVNSLILDYLVIQGDEEAAKTFAEEAQITDYYIPPYVKERLEICE 79

Query: 87  AVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIEL---------IRNGKVEEALE 137
            ++ G++  AI K+N+L PEILDTN +L F L + RL+EL           +  VE  L 
Sbjct: 80  LIKSGSINSAICKLNELEPEILDTNSELLFELLRLRLLELIREVVEEKDTSDLAVERCLN 139

Query: 138 FAQEELAPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLDISQRLKTASEVNAAILT 196
           FA E LAP    NQ FL  LE T++LL F   S  P + ++L+ SQR + A+  N +IL 
Sbjct: 140 FAHENLAPLAPSNQKFLNSLELTMSLLCFPPSSYSPALKNVLNYSQRERVANLANVSILK 199

Query: 197 SQ 198
           SQ
Sbjct: 200 SQ 201

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P69566|RANB9_MOUSE Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 43  MNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102
           + K+V ++LV  GY   AE F   +      +LA+I +R  ++K V  G + +AIE    
Sbjct: 294 IQKMVSSYLVHHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEAIETTQQ 353

Query: 103 LNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 134
           L P +L+ NP L F L+ ++ IE++ NG   E
Sbjct: 354 LYPSLLERNPNLLFTLKVRQFIEMV-NGTDSE 384

May act as an adapter protein to couple membrane receptors to intracellular signaling pathways. May be involved in signaling of ITGB2/LFA-1 and other integrins. Enhances HGF-MET signaling by recruiting Sos and activating the Ras pathway. Enhances dihydrotestosterone-induced transactivation activity of AR, as well as dexamethasone-induced transactivation activity of NR3C1, but not affect estrogen-induced transactivation (By similarity). Stabilizes TP73 isoform Alpha, probably by inhibiting its ubiquitination, and increases its proapoptotic activity. Inhibits the kinase activity of DYRK1A and DYRK1B. Inhibits FMR1 binding to RNA.

Mus musculus (taxid: 10090)

>sp|Q96S59|RANB9_HUMAN Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 43  MNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102
           + K+V ++LV  GY   AE F   +      +LA+I +R  ++K V  G + +AIE    
Sbjct: 369 IQKMVSSYLVHHGYCATAEAFARSTDQTVLEELASIKNRQRIQKLVLAGRMGEAIETTQQ 428

Query: 103 LNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 134
           L P +L+ NP L F L+ ++ IE++ NG   E
Sbjct: 429 LYPSLLERNPNLLFTLKVRQFIEMV-NGTDSE 459

May act as an adapter protein to couple membrane receptors to intracellular signaling pathways. May be involved in signaling of ITGB2/LFA-1 and other integrins. Enhances HGF-MET signaling by recruiting Sos and activating the Ras pathway. Enhances dihydrotestosterone-induced transactivation activity of AR, as well as dexamethasone-induced transactivation activity of NR3C1, but not affect estrogen-induced transactivation. Stabilizes TP73 isoform Alpha, probably by inhibiting its ubiquitination, and increases its proapoptotic activity. Inhibits the kinase activity of DYRK1A and DYRK1B. Inhibits FMR1 binding to RNA.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
224113997	242	predicted protein [Populus trichocarpa]	1.0	0.851	0.966	1e-109
255560784	287	Protein C20orf11, putative [Ricinus comm	1.0	0.717	0.966	1e-109
449457706	242	PREDICTED: glucose-induced degradation p	1.0	0.851	0.961	1e-109
356555082	242	PREDICTED: UPF0559 protein-like [Glycine	1.0	0.851	0.951	1e-108
357446437	241	hypothetical protein MTR_2g012810 [Medic	1.0	0.854	0.951	1e-108
388505624	206	unknown [Medicago truncatula]	0.980	0.980	0.960	1e-108
388507964	241	unknown [Medicago truncatula]	1.0	0.854	0.946	1e-107
356549385	242	PREDICTED: UPF0559 protein-like [Glycine	1.0	0.851	0.946	1e-107
359494870	293	PREDICTED: UPF0559 protein-like [Vitis v	1.0	0.703	0.754	1e-99
296080906	294	unnamed protein product [Vitis vinifera]	1.0	0.700	0.751	2e-99

>gi|224113997|ref|XP_002316637.1| predicted protein [Populus trichocarpa] gi|222859702|gb|EEE97249.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/206 (96%), Positives = 200/206 (97%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLAEIEAMA SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFWIVIRQLAEIEAMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKF+MESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFQMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QR IELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG LLDI
Sbjct: 121 QRFIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGGLLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKGDKL 206
           SQRLKTASEVNAAILTSQS EK  KL
Sbjct: 181 SQRLKTASEVNAAILTSQSREKDPKL 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560784|ref|XP_002521405.1| Protein C20orf11, putative [Ricinus communis] gi|223539304|gb|EEF40895.1| Protein C20orf11, putative [Ricinus communis]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/206 (96%), Positives = 201/206 (97%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLAEIEAMA SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 46  MSLFWIVIRQLAEIEAMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 105

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFR ESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 106 EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 165

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV+NCPVG+LLDI
Sbjct: 166 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVTNCPVGELLDI 225

Query: 181 SQRLKTASEVNAAILTSQSHEKGDKL 206
           SQRLKTASEVNAAILTSQSHEK  KL
Sbjct: 226 SQRLKTASEVNAAILTSQSHEKDPKL 251

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457706|ref|XP_004146589.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus] gi|449488429|ref|XP_004158034.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus]

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/206 (96%), Positives = 199/206 (96%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQ AE EAMA SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFWIVIRQFAENEAMATSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFRMESG EP+IDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRMESGAEPEIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPV DLLDI
Sbjct: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVRDLLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKGDKL 206
           SQRLKTASEVNAAILTSQSHEK  KL
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKL 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555082|ref|XP_003545868.1| PREDICTED: UPF0559 protein-like [Glycine max]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/206 (95%), Positives = 201/206 (97%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSL W+VIRQLAEIEAMA SKK+ITREEWEKKL+DVKIRKEDMNKLVMNFLVTEGYV+AA
Sbjct: 1   MSLLWLVIRQLAEIEAMAASKKLITREEWEKKLSDVKIRKEDMNKLVMNFLVTEGYVEAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFRMESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKGDKL 206
           SQRLKTASEVNAAILTSQSHEK  KL
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKL 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446437|ref|XP_003593496.1| hypothetical protein MTR_2g012810 [Medicago truncatula] gi|355482544|gb|AES63747.1| hypothetical protein MTR_2g012810 [Medicago truncatula]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/206 (95%), Positives = 201/206 (97%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLA+IEAMA SKKVITREEWEKKLN+VKIRKEDMNKLVMNFLVTEG+VDAA
Sbjct: 1   MSLFWIVIRQLAQIEAMAASKKVITREEWEKKLNNVKIRKEDMNKLVMNFLVTEGFVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFR ESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGK+EEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKIEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKGDKL 206
           SQRLKTASEVNAAILTSQSHEK  KL
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKL 206

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505624|gb|AFK40878.1| unknown [Medicago truncatula]

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/202 (96%), Positives = 199/202 (98%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLA+IEAMA SKKVITREEWEKKLN+VKIRKEDMNKLVMNFLVTEG+VDAA
Sbjct: 1   MSLFWIVIRQLAQIEAMAASKKVITREEWEKKLNNVKIRKEDMNKLVMNFLVTEGFVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFR ESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGK+EEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKIEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEK 202
           SQRLKTASEVNAAILTSQSHEK
Sbjct: 181 SQRLKTASEVNAAILTSQSHEK 202

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507964|gb|AFK42048.1| unknown [Medicago truncatula]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/206 (94%), Positives = 200/206 (97%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLFWIVIRQLA+IEAMA SKKVITREEWEKKLN+VKIRKEDMNKLVMNFLVTEG+VDAA
Sbjct: 1   MSLFWIVIRQLAQIEAMAASKKVITREEWEKKLNNVKIRKEDMNKLVMNFLVTEGFVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFR ESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRKESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGK+EEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKIEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKGDKL 206
           SQRLKTASEVNAAILTSQ HEK  KL
Sbjct: 181 SQRLKTASEVNAAILTSQRHEKDPKL 206

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549385|ref|XP_003543074.1| PREDICTED: UPF0559 protein-like [Glycine max]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/206 (94%), Positives = 200/206 (97%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLF + IRQLAEIEAMA SKK+ITREEWEKKL+DVKIRKEDMNKLVMNFLVTEGYV+AA
Sbjct: 1   MSLFLLEIRQLAEIEAMAASKKLITREEWEKKLSDVKIRKEDMNKLVMNFLVTEGYVEAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120
           EKFRMESGTEPDIDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNPQLFFHLQQ
Sbjct: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQSGNVEDAIEKVNDLNPEILDTNPQLFFHLQQ 120

Query: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180
           QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG+LLDI
Sbjct: 121 QRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGELLDI 180

Query: 181 SQRLKTASEVNAAILTSQSHEKGDKL 206
           SQRLKTASEVNAAILTSQSHEK  KL
Sbjct: 181 SQRLKTASEVNAAILTSQSHEKDPKL 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494870|ref|XP_002264581.2| PREDICTED: UPF0559 protein-like [Vitis vinifera]

 Score =  368 bits (944), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 194/257 (75%), Positives = 200/257 (77%), Gaps = 51/257 (19%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLF IVIR+L EIE+MA SKKVITREEWE+KLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFCIVIRELEEIESMASSKKVITREEWERKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 61  EKFRMESGTE-------------------------------------------------- 70
           EKFRMESGTE                                                  
Sbjct: 61  EKFRMESGTEHIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEGYVDAAEKFRMESGT 120

Query: 71  -PDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN 129
            PDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN
Sbjct: 121 EPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN 180

Query: 130 GKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASE 189
           GKV+EALEFAQEELAPRGEENQSFLEELE+TVALLAFED SNCPVG+LLDISQRLKTASE
Sbjct: 181 GKVDEALEFAQEELAPRGEENQSFLEELEKTVALLAFEDFSNCPVGELLDISQRLKTASE 240

Query: 190 VNAAILTSQSHEKGDKL 206
           VNAAILTSQSHEK  KL
Sbjct: 241 VNAAILTSQSHEKDPKL 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296080906|emb|CBI18750.3| unnamed protein product [Vitis vinifera]

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 194/258 (75%), Positives = 200/258 (77%), Gaps = 52/258 (20%)

Query: 1   MSLFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60
           MSLF IVIR+L EIE+MA SKKVITREEWE+KLNDVKIRKEDMNKLVMNFLVTEGYVDAA
Sbjct: 1   MSLFCIVIRELEEIESMASSKKVITREEWERKLNDVKIRKEDMNKLVMNFLVTEGYVDAA 60

Query: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPE-------------- 106
           EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPE              
Sbjct: 61  EKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEGYVDAAEKFRMESG 120

Query: 107 --------------------------------------ILDTNPQLFFHLQQQRLIELIR 128
                                                 ILDTNPQLFFHLQQQRLIELIR
Sbjct: 121 TEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIR 180

Query: 129 NGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTAS 188
           NGKV+EALEFAQEELAPRGEENQSFLEELE+TVALLAFED SNCPVG+LLDISQRLKTAS
Sbjct: 181 NGKVDEALEFAQEELAPRGEENQSFLEELEKTVALLAFEDFSNCPVGELLDISQRLKTAS 240

Query: 189 EVNAAILTSQSHEKGDKL 206
           EVNAAILTSQSHEK  KL
Sbjct: 241 EVNAAILTSQSHEKDPKL 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2008460	243	AT1G61150 "AT1G61150" [Arabido	1.0	0.847	0.782	3.8e-78
DICTYBASE|DDB_G0279265	228	DDB_G0279265 "UPF0559 protein"	0.902	0.815	0.602	1.4e-55
ZFIN|ZDB-GENE-040426-1669	250	gid8a "GID complex subunit 8 h	0.990	0.816	0.466	1.2e-44
UNIPROTKB|Q5ZKQ7	228	GID8 "Glucose-induced degradat	0.888	0.802	0.486	1.5e-44
UNIPROTKB|Q32L52	228	GID8 "Glucose-induced degradat	0.888	0.802	0.480	1.9e-44
MGI|MGI:1923675	228	Gid8 "GID complex subunit 8 ho	0.888	0.802	0.480	5e-44
UNIPROTKB|Q9NWU2	228	GID8 "Glucose-induced degradat	0.888	0.802	0.480	8.1e-44
TAIR|locus:2137926	224	AT4G09300 "AT4G09300" [Arabido	0.902	0.830	0.515	9.3e-43
TAIR|locus:2197404	277	AT1G11110 "AT1G11110" [Arabido	0.932	0.693	0.492	2.8e-41
ASPGD|ASPL0000064925	271	AN7501 [Emericella nidulans (t	0.839	0.638	0.414	6.9e-31

TAIR|locus:2008460 AT1G61150 "AT1G61150" [Arabidopsis thaliana (taxid:3702)]

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 162/207 (78%), Positives = 174/207 (84%)

Query:     1 MSLFWIVIRQLAEI-EAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDA 59
             MSLF I I QL E  E MA SKK+ITREEWEKKLN VK+RKEDMN LVMNFLVTEGYV+A
Sbjct:     1 MSLFRIFINQLEEDDEDMATSKKMITREEWEKKLNAVKLRKEDMNTLVMNFLVTEGYVEA 60

Query:    60 AEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQ 119
             AEKF+ ESGT+P+IDLATITDRMAVKKAVQ GNVEDAIEKVNDLNPEILDTNP+LFFHLQ
Sbjct:    61 AEKFQRESGTKPEIDLATITDRMAVKKAVQNGNVEDAIEKVNDLNPEILDTNPELFFHLQ 120

Query:   120 QQRLIELIRNGKVXXXXXXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLD 179
             QQRLIELIR GK             PRGEENQ+FLEELE+TVALL F+D S CPV +LLD
Sbjct:   121 QQRLIELIRQGKTEEALEFAQEELAPRGEENQAFLEELEKTVALLVFDDASTCPVKELLD 180

Query:   180 ISQRLKTASEVNAAILTSQSHEKGDKL 206
             +S RLKTASEVNAAILTSQSHEK  KL
Sbjct:   181 LSHRLKTASEVNAAILTSQSHEKDPKL 207

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279265 DDB_G0279265 "UPF0559 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 112/186 (60%), Positives = 137/186 (73%)

Query:    21 KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITD 80
             KKVI+  EW+ KL +V I K D+NKLVMN+LV EGY +AA KF+ ES T+  +DLA+I D
Sbjct:    11 KKVISTSEWDDKLAEVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLASIAD 70

Query:    81 RMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXX 140
             RMA++ A+QCG+VE  IE VNDLNPEILDTNPQL+FHLQQQ+LIELIR G          
Sbjct:    71 RMAIRSAIQCGDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQ 130

Query:   141 XXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSH 200
                 P+GEEN  FLEELE+T++LL FED +  P+  LLD SQR KTA E+N+AIL SQS 
Sbjct:   131 DELAPQGEENNKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQ 190

Query:   201 EKGDKL 206
             +K  KL
Sbjct:   191 DKDPKL 196

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1669 gid8a "GID complex subunit 8 homolog a (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 97/208 (46%), Positives = 140/208 (67%)

Query:     3 LFWIVIRQLA--EIEAMAMSKKV--ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVD 58
             + ++VI  L       M+ S+K   IT+EEW  KLN+V I++ DMN+L+MN+LVTEG+ +
Sbjct:     7 MIFVVISCLVYPSTSVMSYSEKPEDITKEEWMDKLNNVHIQRADMNRLIMNYLVTEGFKE 66

Query:    59 AAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHL 118
             AAEKFRMESG EP++DL ++ +R+ +++ V  G +++AI  +N L+PE+LDTN  L+FHL
Sbjct:    67 AAEKFRMESGIEPNVDLDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHL 126

Query:   119 QQQRLIELIRNGKVXXXXXXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLL 178
             QQQ LIELIR  +              +GEE++  L E+ERT+ALLAF++    P GDLL
Sbjct:   127 QQQHLIELIRLRETEAALEFAQSQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLL 186

Query:   179 DISQRLKTASEVNAAILTSQSHEKGDKL 206
             ++ QR K  SEVN A+L  ++ E   KL
Sbjct:   187 NMMQRQKVWSEVNQAVLDYENRESTPKL 214

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5ZKQ7 GID8 "Glucose-induced degradation protein 8 homolog" [Gallus gallus (taxid:9031)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 89/183 (48%), Positives = 129/183 (70%)

Query:    24 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
             IT++EW +KLN++ I++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    84 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 143
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   144 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKG 203
               +GEE++  L E+ERT+ALLAF++    P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query:   204 DKL 206
              KL
Sbjct:   190 PKL 192

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q32L52 GID8 "Glucose-induced degradation protein 8 homolog" [Bos taurus (taxid:9913)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 88/183 (48%), Positives = 130/183 (71%)

Query:    24 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    84 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 143
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   144 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKG 203
               +GEE++  L E+ERT+ALLAF++  + P GDLL++ QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENREST 189

Query:   204 DKL 206
              KL
Sbjct:   190 PKL 192

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1923675 Gid8 "GID complex subunit 8 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 88/183 (48%), Positives = 127/183 (69%)

Query:    24 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    84 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 143
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   144 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKG 203
               +GEE++  L E+ERT+ALLAF+     P GDLL + QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENREST 189

Query:   204 DKL 206
              KL
Sbjct:   190 PKL 192

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9NWU2 GID8 "Glucose-induced degradation protein 8 homolog" [Homo sapiens (taxid:9606)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 88/183 (48%), Positives = 126/183 (68%)

Query:    24 ITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMA 83
             IT++EW +KLN++ +++ DMN+L+MN+LVTEG+ +AAEKFRMESG EP +DL T+ +R+ 
Sbjct:    10 ITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIK 69

Query:    84 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXXXXXXXXX 143
             +++ +  G +++AI  +N L+PE+LDTN  L+FHLQQQ LIELIR  +            
Sbjct:    70 IREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQL 129

Query:   144 XPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKG 203
               +GEE++  L E+ERT+ALLAF+     P GDLL   QR K  SEVN A+L  ++ E  
Sbjct:   130 AEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENREST 189

Query:   204 DKL 206
              KL
Sbjct:   190 PKL 192

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2137926 AT4G09300 "AT4G09300" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 98/190 (51%), Positives = 126/190 (66%)

Query:    17 MAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLA 76
             M   K V+T E+WE KL+DV+I  EDMN+LVMN LV EGY +AAEKF+ ES T P+ DLA
Sbjct:     1 METPKIVVTSEDWESKLSDVEILIEDMNRLVMNLLVAEGYREAAEKFKEESITMPEEDLA 60

Query:    77 TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVXXXX 136
             ++ +R+ V KA++  N+EDAIEK+N LNPEI+ T+    FHL QQ LIELIR  K     
Sbjct:    61 SMNERLEVIKAIESRNLEDAIEKLNALNPEIIKTS----FHLHQQMLIELIREKKTEEAV 116

Query:   137 XXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILT 196
                     P  EEN++   ELE+TV +L  E + NCP  +L   SQ ++TAS VN AI T
Sbjct:   117 AFAQEKLAPLAEENEALQRELEKTVCILVTEGLPNCPSRELFHNSQWIRTASHVNEAIHT 176

Query:   197 SQSHEKGDKL 206
             SQ+ EKG +L
Sbjct:   177 SQTGEKGPEL 186

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197404 AT1G11110 "AT1G11110" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 100/203 (49%), Positives = 137/203 (67%)

Query:    10 QLAEIEAMAMS---KKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRME 66
             Q++E E   +    KK+I  + WE+ L   +IRKEDMN+LVMNFLV EGY++A EKF+ E
Sbjct:    39 QISENEEFVIQEQPKKLIMSDVWEQYLTTAEIRKEDMNRLVMNFLVVEGYLEAVEKFQKE 98

Query:    67 SGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIEL 126
             SGT+  + +A+I+DR+AVK+ ++ G++EDA+EK+N +NPEIL TN    F L QQR IE 
Sbjct:    99 SGTK-QVGVASISDRLAVKRDIESGDLEDAVEKLNAINPEILKTN----FSLNQQRFIER 153

Query:   127 IRNG-KVXXXXXXXXXXXXPRGEENQSFLEELERTVALLAFEDVSNCPVGD--LLDISQR 183
             IR G  +            P  E+N +FLEELE+T+A+L F D+ + P  +  LLD S+ 
Sbjct:   154 IRIGVTIKETFNFAEKELKPLVEQNLAFLEELEKTMAILRFRDLPDIPEAERELLDNSRW 213

Query:   184 LKTASEVNAAILTSQSHEKGDKL 206
              KTA+EVNAAILTSQ+  K  KL
Sbjct:   214 FKTAAEVNAAILTSQTGLKCPKL 236

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000064925 AN7501 [Emericella nidulans (taxid:162425)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 75/181 (41%), Positives = 112/181 (61%)

Query:    25 TREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAV 84
             T   +E+K+++VK  K DMN+LVM++LVT GY  AA+KF +E+  EP +D+ +I +R+ +
Sbjct:    17 TWHHFERKVDEVKPSKTDMNRLVMDYLVTNGYPAAAQKFALEANIEP-VDVESIRERVEI 75

Query:    85 KKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRN------GKVXXXXXX 138
             + A+  GN++ AIEK+N+LNP+ILD NP L F L + +L+ELIR+      G +      
Sbjct:    76 RTAIYSGNIQAAIEKINELNPQILDENPSLHFSLLRLQLVELIRSCSVNPDGDITPALEF 135

Query:   139 XXXXXXPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLDISQRLKTASEVNAAILTS 197
                   PR   N  FLE+LE+T+ALL +   +  P +  LL    R    ++VNAAIL  
Sbjct:   136 ATSQLAPRAPTNPQFLEDLEKTLALLIYPKENLTPSLAPLLHSDLRRDIYAKVNAAILQD 195

Query:   198 Q 198
             Q
Sbjct:   196 Q 196

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NWU2	GID8_HUMAN	No assigned EC number	0.5337	0.8640	0.7807	yes	no
Q54X16	GID8_DICDI	No assigned EC number	0.6505	0.9029	0.8157	yes	no
Q32L52	GID8_BOVIN	No assigned EC number	0.5337	0.8640	0.7807	yes	no
Q9D7M1	GID8_MOUSE	No assigned EC number	0.5337	0.8640	0.7807	yes	no
Q5ZKQ7	GID8_CHICK	No assigned EC number	0.5393	0.8640	0.7807	yes	no
A7SWD3	GID8_NEMVE	No assigned EC number	0.5245	0.8883	0.8133	N/A	no
Q6PC55	GID8_DANRE	No assigned EC number	0.5401	0.8980	0.8114	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_kg.C_LG_XI000005 hypothetical protein (243 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	1e-34
smart00757	99	smart00757, CRA, CT11-RanBPM	4e-20
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	1e-11
pfam08513	27	pfam08513, LisH, LisH	7e-07
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	3e-06

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score =  119 bits (301), Expect = 1e-34
 Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 3/131 (2%)

Query: 77  TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEAL 136
              +R  +++++  G++E+A+E  N+  PE+L  N  L F L+ Q+ IELIR GK+ EAL
Sbjct: 1   VFKERNKIRESLLNGDLEEALEWCNENKPELLKINSNLEFELRLQQFIELIREGKILEAL 60

Query: 137 EFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVGDLLDISQRLKTASEVNAAIL 195
           E+A+E LAP   E    L+E+++ + LLAF D ++  P   LL  S+  K A+E N AIL
Sbjct: 61  EYARENLAPFFNE--QHLKEIQKLMGLLAFPDPTDSSPYKSLLSPSRWEKLANEFNRAIL 118

Query: 196 TSQSHEKGDKL 206
                     L
Sbjct: 119 KLLGLSSESPL 129

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|214806 smart00757, CRA, CT11-RanBPM

 Score = 80.8 bits (200), Expect = 4e-20
 Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 1/73 (1%)

Query: 130 GKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVGDLLDISQRLKTAS 188
           GK+EEAL +A+E LAP  +E++ FL+ELE+T+ALLA+ D +   P  +LL  SQR K A 
Sbjct: 1   GKIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAE 60

Query: 189 EVNAAILTSQSHE 201
           E+N+AIL     +
Sbjct: 61  ELNSAILELLHGK 73

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi). Length = 99

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 57.2 bits (139), Expect = 1e-11
 Identities = 19/58 (32%), Positives = 39/58 (67%)

Query: 77  TITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEE 134
              +R  +++ +  G+ ++A+E ++ L P +L+ N +L F L++Q+ +EL+R GK+EE
Sbjct: 1   EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|149534 pfam08513, LisH, LisH

 Score = 43.8 bits (105), Expect = 7e-07
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 41 EDMNKLVMNFLVTEGYVDAAEKFRMES 67
          E++N+L+ ++LV  GY + AE F  ES
Sbjct: 1  EELNRLIYDYLVKSGYKETAEAFAKES 27

The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 42.0 bits (100), Expect = 3e-06
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 38 IRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71
          I + ++N+L++ +L+  GY + AE  + ESG   
Sbjct: 1  ISRSELNRLILEYLLRNGYEETAETLQKESGLSL 34

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	100.0
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	99.97
KOG0396	389	consensus Uncharacterized conserved protein [Funct	99.97
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	99.92
smart00757	99	CRA CT11-RanBPM. protein-protein interaction domai	99.66
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	99.4
KOG0293	519	consensus WD40 repeat-containing protein [Function	98.64
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.5
KOG1477	469	consensus SPRY domain-containing proteins [General	98.31
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	98.19
COG5109	396	Uncharacterized conserved protein, contains RING Z	97.77
KOG0275	508	consensus Conserved WD40 repeat-containing protein	95.75
KOG1333	241	consensus Uncharacterized conserved protein [Funct	94.27
PF09398	81	FOP_dimer: FOP N terminal dimerisation domain; Int	89.4

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=100.00  E-value=8.2e-40  Score=266.31  Aligned_cols=185  Identities=60%  Similarity=0.893  Sum_probs=180.3

Q ss_pred             cCCCHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 028628           22 KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP-DIDLATITDRMAVKKAVQCGNVEDAIEKV  100 (206)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~-~~~~~~~~~r~~I~~~I~~g~i~~Ai~~~  100 (206)
                      +.+++++|.+.+.++.+....+|+||++||+|+||.++|+.|++++|+++ ..+.+.+..|.+|+.+|..|+++.|++.+
T Consensus         8 ~~~~~~~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~i   87 (228)
T KOG2659|consen    8 SFSTKEEWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKV   87 (228)
T ss_pred             ccCchhhhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999987 88999999999999999999999999999


Q ss_pred             HhhCchhhhcccchhhhhHHHHHHHHHHcCChHHHHHHHHHhcCccccCChhHHHHHHHHHhhhcccCCCCCchhhhcCh
Q 028628          101 NDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI  180 (206)
Q Consensus       101 ~~~~p~l~~~~s~L~F~L~~q~fieli~~~~~~~Al~y~r~~l~~~~~~~~~~~~~i~~l~~LLay~~~~~sp~~~ll~~  180 (206)
                      +++.|.++..+..|.|.|++|+||||||.|...+||+|+|+.++|++..+++++.+++++|++|+|+++..||++.++..
T Consensus        88 n~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~  167 (228)
T KOG2659|consen   88 NQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQ  167 (228)
T ss_pred             HHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhCCCCCCCCC
Q 028628          181 SQRLKTASEVNAAILTSQSHEKGDKL  206 (206)
Q Consensus       181 ~~r~~la~~vN~aiL~~~~~~~~~~l  206 (206)
                      ++|.++|+.||++||++++.+..|+|
T Consensus       168 s~R~kvA~~vN~aiL~~~~~~~~~~l  193 (228)
T KOG2659|consen  168 SLRQKVASEVNSAILASQEHESEPKL  193 (228)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchH
Confidence            99999999999999999999988864

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=99.97  E-value=2.5e-30  Score=200.05  Aligned_cols=126  Identities=38%  Similarity=0.616  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhCchhhhcccchhhhhHHHHHHHHHHcCChHHHHHHHHHhcCccccCChhHHHHH
Q 028628           78 ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEEL  157 (206)
Q Consensus        78 ~~~r~~I~~~I~~g~i~~Ai~~~~~~~p~l~~~~s~L~F~L~~q~fieli~~~~~~~Al~y~r~~l~~~~~~~~~~~~~i  157 (206)
                      +.+|+.|+++|.+||+++|++|+++++|.+++.++.++|.|++|+||++|+.|++.+||+|||+++.|+..   .+.+++
T Consensus         2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~---~~~~~l   78 (145)
T PF10607_consen    2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFND---EFLEEL   78 (145)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHH---HHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999976654   468999


Q ss_pred             HHHHhhhcccCCCC---CchhhhcChhhHHHHHHHHHHHHHhhCCCCCCCCC
Q 028628          158 ERTVALLAFEDVSN---CPVGDLLDISQRLKTASEVNAAILTSQSHEKGDKL  206 (206)
Q Consensus       158 ~~l~~LLay~~~~~---sp~~~ll~~~~r~~la~~vN~aiL~~~~~~~~~~l  206 (206)
                      +++|++|+|+++.+   +||++++++++|++||+.||++++..+|.|++|+|
T Consensus        79 ~~~~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L  130 (145)
T PF10607_consen   79 KKLMSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPL  130 (145)
T ss_pred             HHHHHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHH
Confidence            99999999999987   79999999999999999999999999999999986

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=8.4e-30  Score=218.05  Aligned_cols=165  Identities=21%  Similarity=0.328  Sum_probs=157.5

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCchhhhcccchhhhh
Q 028628           39 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHL  118 (206)
Q Consensus        39 ~~~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Ai~~~~~~~p~l~~~~s~L~F~L  118 (206)
                      ++..++++|.||+.|+||++||..|.+++.++...|.+.+...+.|+++|++|++.+|+.||++|...|.+.+|.|+|.+
T Consensus       114 ~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~l  193 (389)
T KOG0396|consen  114 PRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQL  193 (389)
T ss_pred             HHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHhcCccccCChhHHHHHHHHHhhhcccCCC-CCchhhhcChhhHHHHHHHHHHHHHhh
Q 028628          119 QQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVS-NCPVGDLLDISQRLKTASEVNAAILTS  197 (206)
Q Consensus       119 ~~q~fieli~~~~~~~Al~y~r~~l~~~~~~~~~~~~~i~~l~~LLay~~~~-~sp~~~ll~~~~r~~la~~vN~aiL~~  197 (206)
                      +.|+|||||+.+++.+||+|+|++|+|++..+   .++++.+||+|+|+.-. .+||..+++..||+.+++.|-+.-+..
T Consensus       194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~---~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l~~lF~s~a~~l  270 (389)
T KOG0396|consen  194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSH---KSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVLADLFLSEALKL  270 (389)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhh---HHHHHHHHHhhcCccccCcccccCcccHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999999999999765   79999999999999854 467999999999999999999999999


Q ss_pred             CCCCCCCCC
Q 028628          198 QSHEKGDKL  206 (206)
Q Consensus       198 ~~~~~~~~l  206 (206)
                      .|.|-.|+|
T Consensus       271 ~~i~~~~~L  279 (389)
T KOG0396|consen  271 FGIPINPAL  279 (389)
T ss_pred             hCCCCCcHH
Confidence            999988875

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2e-24  Score=186.92  Aligned_cols=169  Identities=20%  Similarity=0.305  Sum_probs=155.0

Q ss_pred             cCCCCHHH-HHHHHHHHHHhhCHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCchhhhcc
Q 028628           35 DVKIRKED-MNKLVMNFLVTEGYVDAAEKFRMESGTEPD--IDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTN  111 (206)
Q Consensus        35 ~~~~~~~~-l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~~--~~~~~~~~r~~I~~~I~~g~i~~Ai~~~~~~~p~l~~~~  111 (206)
                      ++..+... +|.+|..|++|+|..|++..|++|+|....  .....|.+.++|.++|.+||+++|++|+..++..|.+.+
T Consensus       110 ~v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~  189 (394)
T KOG2817|consen  110 SVDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS  189 (394)
T ss_pred             CcChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc
Confidence            44444444 599999999999999999999999998753  456799999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHHHHHcCChH--HHHHHHHHhcCccccCChhHHHHHHHHHhhhcccCC--CCCchhhhcChhhHHHHH
Q 028628          112 PQLFFHLQQQRLIELIRNGKVE--EALEFAQEELAPRGEENQSFLEELERTVALLAFEDV--SNCPVGDLLDISQRLKTA  187 (206)
Q Consensus       112 s~L~F~L~~q~fieli~~~~~~--~Al~y~r~~l~~~~~~~~~~~~~i~~l~~LLay~~~--~~sp~~~ll~~~~r~~la  187 (206)
                      +.|+|.|+.++|+++++.|.-.  +||.|+|++++||+.++   ..+||.+|++|.|-..  +.+||.+++++..|..+.
T Consensus       190 s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~---~~eIQklm~sl~~l~~gl~~spy~~~ls~~~w~~~~  266 (394)
T KOG2817|consen  190 SSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADH---LREIQKLMGSLLYLRNGLEKSPYSEILSPKLWKELT  266 (394)
T ss_pred             ccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch---HHHHHHHHHHHHHHHcCCCCCChHHHhCHHHHHHHH
Confidence            9999999999999999998765  99999999999998766   6899999999999776  689999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCCCC
Q 028628          188 SEVNAAILTSQSHEKGDKL  206 (206)
Q Consensus       188 ~~vN~aiL~~~~~~~~~~l  206 (206)
                      ..|-+--+..+|.+.++||
T Consensus       267 ~~f~r~ycallg~s~eSPL  285 (394)
T KOG2817|consen  267 EEFTREYCALLGISVESPL  285 (394)
T ss_pred             HHHHHHHHHHcCCCccCcH
Confidence            9999999999999999986

>smart00757 CRA CT11-RanBPM

Probab=99.66  E-value=2.6e-16  Score=113.77  Aligned_cols=76  Identities=47%  Similarity=0.638  Sum_probs=71.9

Q ss_pred             ChHHHHHHHHHhcCccccCChhHHHHHHHHHhhhcccCC-CCCchhhhcChhhHHHHHHHHHHHHHhhC-CCCCCCCC
Q 028628          131 KVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV-SNCPVGDLLDISQRLKTASEVNAAILTSQ-SHEKGDKL  206 (206)
Q Consensus       131 ~~~~Al~y~r~~l~~~~~~~~~~~~~i~~l~~LLay~~~-~~sp~~~ll~~~~r~~la~~vN~aiL~~~-~~~~~~~l  206 (206)
                      ++.+||+|||+++++|..+++.+.++|+++|++|+|+++ +.+||++++++++|+.+++.||++||..+ |.+.+|+|
T Consensus         2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~~~s~L   79 (99)
T smart00757        2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKSSESPL   79 (99)
T ss_pred             cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCCCCChH
Confidence            578999999999999998888888999999999999999 88999999999999999999999999998 99998875

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)

>smart00668 CTLH C-terminal to LisH motif

Probab=99.40  E-value=6.2e-13  Score=86.88  Aligned_cols=55  Identities=31%  Similarity=0.669  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhCchhhhcccchhhhhHHHHHHHHHHcCCh
Q 028628           78 ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKV  132 (206)
Q Consensus        78 ~~~r~~I~~~I~~g~i~~Ai~~~~~~~p~l~~~~s~L~F~L~~q~fieli~~~~~  132 (206)
                      +..++.|+++|++|+|++|++|+++++|.+.+.++.+.|.|++|+|+|+++.++.
T Consensus         2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence            5688999999999999999999999999999999999999999999999998764

Alpha-helical motif of unknown function.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.64  E-value=2.2e-07  Score=81.90  Aligned_cols=128  Identities=15%  Similarity=0.236  Sum_probs=107.2

Q ss_pred             hhcccCCCHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHcCCHHHHH
Q 028628           18 AMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAI   97 (206)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Ai   97 (206)
                      .++++.|.+.||              .+++.+.|+.-||..++..++.|+|+....     +.-+...++++.|+|+.++
T Consensus         9 l~~k~likk~ef--------------i~il~q~l~slgy~~S~~~lE~es~ll~~t-----at~klf~q~vlqg~w~q~v   69 (519)
T KOG0293|consen    9 LGSKGLIKKGEF--------------IRILWQILYSLGYDHSSPLLEWESGLLIPT-----ATTKLFDQQVLQGQWDQQV   69 (519)
T ss_pred             hhhhceeccchh--------------hHhHHHHHHhcCccccchhhHHhhCccccc-----chHHHHHHHHHcccHHHHH
Confidence            467888888898              899999999999999999999999986322     2346678999999999999


Q ss_pred             HHHHhh-CchhhhcccchhhhhHHHHHHHHHHcCChHHHHHHHHHhcCccccCChhHHHHHHHHHhhhcccCC
Q 028628           98 EKVNDL-NPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV  169 (206)
Q Consensus        98 ~~~~~~-~p~l~~~~s~L~F~L~~q~fieli~~~~~~~Al~y~r~~l~~~~~~~~~~~~~i~~l~~LLay~~~  169 (206)
                      .-+... ++. .+......|.+.+|.|+|+++.|.+..|+...|+.+.+....    .+.+.++.+.|++++.
T Consensus        70 ~~~~~i~~~d-e~~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr~~----~kk~~el~~sll~sn~  137 (519)
T KOG0293|consen   70 MSLVRISFED-ERNRKEAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLRKN----KKKFHELASSLLVSND  137 (519)
T ss_pred             HHHhhccCcc-hhhhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhhhh----HHHHHHHHHHHhcccc
Confidence            887766 444 455578999999999999999999999999999877776542    4788899998888874

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.50  E-value=2e-07  Score=51.67  Aligned_cols=27  Identities=37%  Similarity=0.811  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHh
Q 028628           41 EDMNKLVMNFLVTEGYVDAAEKFRMES   67 (206)
Q Consensus        41 ~~l~~lI~~YL~~~Gy~~ta~~f~~e~   67 (206)
                      +.||.+|.+||.++||.+||.+|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            368999999999999999999999985

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]

Probab=98.31  E-value=1.8e-07  Score=85.13  Aligned_cols=165  Identities=23%  Similarity=0.188  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHhCCCC--Cc-----cHHHH-----HHHHHHHHHHHcCCHHHHHHHHHhhCchhhh
Q 028628           42 DMNKLVMNFLVTEGYVDAAEKFRMESGTEP--DI-----DLATI-----TDRMAVKKAVQCGNVEDAIEKVNDLNPEILD  109 (206)
Q Consensus        42 ~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~--~~-----~~~~~-----~~r~~I~~~I~~g~i~~Ai~~~~~~~p~l~~  109 (206)
                      .....+..|+++.|+.+++..|+..+.-..  ..     ..+..     ..+.....-+-.+.+..+.+.+.+.-+....
T Consensus       251 l~t~~~~~~~l~~~~~~s~~~~s~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~  330 (469)
T KOG1477|consen  251 LSTVPYPYFLLPGGYEESIAYFSTGARRFNDPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAALIPTYRK  330 (469)
T ss_pred             ccCCCccceecCcchhhhhhhhcchhhccCCcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhcccccccccc
Confidence            445688999999999999999988765421  10     01100     1233334444445555556665555555444


Q ss_pred             -------cccchhhhhHHHHHHHHHHcCChHHHHHHHHHhcCcccc--CChhHHHHHHHHHhhhcccCCCCCchhhhcCh
Q 028628          110 -------TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGE--ENQSFLEELERTVALLAFEDVSNCPVGDLLDI  180 (206)
Q Consensus       110 -------~~s~L~F~L~~q~fieli~~~~~~~Al~y~r~~l~~~~~--~~~~~~~~i~~l~~LLay~~~~~sp~~~ll~~  180 (206)
                             ..+...+.+.|+.+|.+.+.+.+...+++.+..+++...  ........++..++||+|++|.+||...++++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~s~~g~~~~~  410 (469)
T KOG1477|consen  331 VGQVFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEESPVGYLLDP  410 (469)
T ss_pred             cceeecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCcccCccccccCc
Confidence                   347789999999999999999999999999998887765  34456789999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhCCCCCCCCC
Q 028628          181 SQRLKTASEVNAAILTSQSHEKGDKL  206 (206)
Q Consensus       181 ~~r~~la~~vN~aiL~~~~~~~~~~l  206 (206)
                      ..|+-+++.+|.+||...+.+++|+|
T Consensus       411 ~~~e~v~~~~n~~il~t~~~~~~~~l  436 (469)
T KOG1477|consen  411 IQREPVAEALNSAILETDNNSKDPDL  436 (469)
T ss_pred             ccchhHHhhhcccccccCCCCccchh
Confidence            99999999999999999999998863

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=98.19  E-value=3.8e-06  Score=48.23  Aligned_cols=32  Identities=31%  Similarity=0.754  Sum_probs=28.9

Q ss_pred             CHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCC
Q 028628           39 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE   70 (206)
Q Consensus        39 ~~~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~   70 (206)
                      .+..++++|.+||.++||.+||.+|.+|+|+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            35678999999999999999999999999874

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.77  E-value=0.00055  Score=58.80  Aligned_cols=186  Identities=10%  Similarity=0.015  Sum_probs=137.1

Q ss_pred             HHhhhcccCCCHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHHHcCCH
Q 028628           15 EAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPD-IDLATITDRMAVKKAVQCGNV   93 (206)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~~-~~~~~~~~r~~I~~~I~~g~i   93 (206)
                      +..+.....|+++.. +.+...+.....++.+-..++.++|-..-+..|+.+.|..+. ...+.|...+.|.+.|.+.+.
T Consensus        76 ~k~~~~~~nFd~~~~-n~~~~f~~~~v~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k~~  154 (396)
T COG5109          76 LKEDCRPANFDVQVG-NQIYPFSTQTVTYLVVYYLLENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEKST  154 (396)
T ss_pred             HHHhhccccCCHHHH-hhcCCCccceeeehHHHHHHHhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccchh
Confidence            334455566777665 555566666677778888888888988889999999998654 446899999999999999999


Q ss_pred             HHHHHHHHhhCchhhhcccchhhhhHHHHHHH--HHHcCChHHHHHHHHHhcCccccCChhHHHHHHHHHhhhcccCCC-
Q 028628           94 EDAIEKVNDLNPEILDTNPQLFFHLQQQRLIE--LIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVS-  170 (206)
Q Consensus        94 ~~Ai~~~~~~~p~l~~~~s~L~F~L~~q~fie--li~~~~~~~Al~y~r~~l~~~~~~~~~~~~~i~~l~~LLay~~~~-  170 (206)
                      ..-|+|+ +-...+.+.++..++.+.......  ++. .++.+|+.+.++.++.|..+|   ...++.++-.+.+.+.. 
T Consensus       155 ~l~iE~~-Qi~gyl~kgdtesel~l~~~~~esl~l~h-k~~~~a~r~c~t~~a~f~~kh---~~dv~~~~~~l~nap~dc  229 (396)
T COG5109         155 FLLIEFL-QIEGYLSKGDTESELELYLVSHESLLLIH-KRYDEALRLCFTKLASFVPKH---IQDVKPLLRFLVNAPTDC  229 (396)
T ss_pred             HhHHHHH-HhcCccccCCchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHcCchHH
Confidence            9999999 555666666666666666554444  444 379999999999999998555   57777887777764421 


Q ss_pred             -----C-C--chhh-----hcC---------hhhHHHHHHHHHHHHHhhCCCCCCCCC
Q 028628          171 -----N-C--PVGD-----LLD---------ISQRLKTASEVNAAILTSQSHEKGDKL  206 (206)
Q Consensus       171 -----~-s--p~~~-----ll~---------~~~r~~la~~vN~aiL~~~~~~~~~~l  206 (206)
                           + +  ...+     +++         ..-|..+...|-+..++..|.+.++||
T Consensus       230 frhrekelmqnI~~~l~ksligqPiEdIDkvnk~~k~l~~lF~~eycaa~gm~~~spL  287 (396)
T COG5109         230 FRHREKELMQNIQEALKKSLIGQPIEDIDKVNKSRKKLIELFKSEYCAANGMPNRSPL  287 (396)
T ss_pred             hhhcchhHHHHHHHHHHHhhcCCcHHHHHHhhhhHHHHHHHHHHHHHHhcCCCccChH
Confidence                 1 0  0111     111         245889999999999999999999986

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=95.75  E-value=0.14  Score=44.67  Aligned_cols=144  Identities=15%  Similarity=0.204  Sum_probs=93.5

Q ss_pred             CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCchhhhcccchhh
Q 028628           37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFF  116 (206)
Q Consensus        37 ~~~~~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Ai~~~~~~~p~l~~~~s~L~F  116 (206)
                      .+....+.++|.+||-.+.+..|...+.+|.++.-. -.+   ......+.|.+|.||..+.-++...-     ...-.-
T Consensus         4 eiessdVIrli~QflKE~~L~rtl~tLQeEt~VSLN-TVD---Svd~Fv~dI~sG~WD~VL~~vqsLKL-----P~kkL~   74 (508)
T KOG0275|consen    4 EIESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLN-TVD---SVDGFVNDINSGHWDTVLKTVQSLKL-----PDKKLI   74 (508)
T ss_pred             eeecchHHHHHHHHHhhhhHHHHHHHHHHhhcccee-ech---hHHHHHHhcccCchHHHHHHHHhccC-----chhHHH
Confidence            344457789999999999999999999999987421 111   12346778999999999999887652     123345


Q ss_pred             hhHHHHHHHHHHcCChHHHHHHHHHhcC--ccccCChhHHHHHHHHHhhhcccCCCCCchhhhcChhhHHHHHHHHH
Q 028628          117 HLQQQRLIELIRNGKVEEALEFAQEELA--PRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVN  191 (206)
Q Consensus       117 ~L~~q~fieli~~~~~~~Al~y~r~~l~--~~~~~~~~~~~~i~~l~~LLay~~~~~sp~~~ll~~~~r~~la~~vN  191 (206)
                      .|+-|-.+|||.-+++..|-..+|+.-+  -..+..|+-.-.++.+..= .|-||.+ .|.+---..||..+|+.+.
T Consensus        75 dLYEqivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R-~YFDp~E-aY~dssKEkrRa~IAQ~ls  149 (508)
T KOG0275|consen   75 DLYEQIVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNR-SYFDPRE-AYGDSSKEKRRAVIAQALS  149 (508)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcc-cccChhh-hcCcchHHHHHHHHHHHhc
Confidence            7899999999998888888888885321  1122233322333332221 2444432 2445223566677777765

>KOG1333 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.27  E-value=0.35  Score=39.46  Aligned_cols=104  Identities=15%  Similarity=0.198  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCchhhhc----c----c
Q 028628           41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDT----N----P  112 (206)
Q Consensus        41 ~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Ai~~~~~~~p~l~~~----~----s  112 (206)
                      ..++.+|-+||+-.|+..|.++|-.|...........=+...+..++|...|++.--..=......++.+    .    .
T Consensus         6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~frvdrivdq~~~a~q~~Dl~aLr~~W~~l~~r~Fs~Le~~y~~~~~   85 (241)
T KOG1333|consen    6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKGFRVDRIVDQLQQAMQVYDLAALRDYWSYLERRLFSRLEDIYRPTIH   85 (241)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            4578999999999999999999988877653332222233455667777777776543322222233321    1    3


Q ss_pred             chhhhhHHHHHHHHHHcCChHHHHHHHHHhcC
Q 028628          113 QLFFHLQQQRLIELIRNGKVEEALEFAQEELA  144 (206)
Q Consensus       113 ~L~F~L~~q~fieli~~~~~~~Al~y~r~~l~  144 (206)
                      .++--+.+...+--+.++.+++|=+|.++.-+
T Consensus        86 kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~  117 (241)
T KOG1333|consen   86 KLETSLFRFYLVYTIQTNRNDKAQEFFAKQAT  117 (241)
T ss_pred             HHHHHHHHHHHhhhhhcCChHHHHHHHHHHHH
Confidence            35566777777888889999999999987443

>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes

Probab=89.40  E-value=0.85  Score=31.82  Aligned_cols=30  Identities=23%  Similarity=0.288  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHhCCCC
Q 028628           42 DMNKLVMNFLVTEGYVDAAEKFRMESGTEP   71 (206)
Q Consensus        42 ~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~   71 (206)
                      .++.+|.+||--+||.=|+..|..|+|.+.
T Consensus        20 Li~eLIrEyLef~~l~~TlsVf~~Es~~~~   49 (81)
T PF09398_consen   20 LINELIREYLEFNNLDYTLSVFQPESGQPE   49 (81)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHT-TT
T ss_pred             HHHHHHHHHHHHcCCccHHHHHhhccCCCC
Confidence            579999999999999999999999999863

This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 39/251 (15%), Positives = 80/251 (31%), Gaps = 80/251 (31%)

Query: 4   FWIVIRQLAEIEA-MAMSKKVITR-----EEWEKKLNDVKIRKEDMNKLVMNFLVTEGYV 57
           FW+ ++     E  + M +K++ +            +++K+R   +   +   L ++ Y 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 58  DA------------AEKFRMESGTEPDIDLAT-----ITDRMAVKKA-------VQCGNV 93
           +                F +         L T     +TD ++                 
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKI-----LLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 94  EDAIE---------KVNDLNPEILDTNPQLFFHLQQQRLI-ELIRNG------------- 130
            D ++         +  DL  E+L TNP     L    +I E IR+G             
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNP---RRLS---IIAESIRDGLATWDNWKHVNCD 353

Query: 131 KVEEALEFAQEELAPRGEENQSFLEEL----------ERTVALLAFEDVSNCPVGDLLDI 180
           K+   +E +   L P   E +   + L             ++L+ F+ + +      + +
Sbjct: 354 KLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV----MVV 407

Query: 181 SQRLKTASEVN 191
             +L   S V 
Sbjct: 408 VNKLHKYSLVE 418

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 26/200 (13%), Positives = 71/200 (35%), Gaps = 39/200 (19%)

Query: 19  MSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGY-VDAAEKFRMESGTEPDIDLAT 77
           M K ++++EE    ++ + + K+ ++  +  F        +  +KF +E     +     
Sbjct: 41  MPKSILSKEE----IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKF-- 93

Query: 78  ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLF--FHLQQQRLIELIRNGKVEEA 135
           +   +  ++          IE+ + L       + Q+F  +++ + +    +R      A
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLY-----NDNQVFAKYNVSRLQPYLKLRQ-----A 143

Query: 136 LEFAQEE---------------LAPRGEENQSFLEELERTVALLAFEDVSNCP-VGDLLD 179
           L   +                 +A     +     +++  +  L   ++ NC     +L+
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---NLKNCNSPETVLE 200

Query: 180 ISQRLKTASEVNAAILTSQS 199
           + Q+L    + N    +  S
Sbjct: 201 MLQKLLYQIDPNWTSRSDHS 220

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 6e-04
 Identities = 29/239 (12%), Positives = 77/239 (32%), Gaps = 59/239 (24%)

Query: 3   LFWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEK 62
           LFW ++ +  E+    + + +    ++   L    I+ E         ++T  Y++  ++
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKF---LMS-PIKTEQRQPS----MMTRMYIEQRDR 118

Query: 63  FRMESGTEPDIDLATITDRMAVKKAVQ---------------CGN---VEDAI--EKVND 102
              ++      +++ +   + +++A+                 G      D     KV  
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 103 LNP---------------EILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRG 147
                              +L+   +L + +          +  ++  +   Q EL    
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---- 234

Query: 148 EENQSFLEELERTVALLAFEDVSNCPVGDLLDISQRLKTASEVNAAILTSQSHEKGDKL 206
              +  L+       LL   +V N    +  ++S ++         +LT++  +  D L
Sbjct: 235 ---RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI---------LLTTRFKQVTDFL 281

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	95.32
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	95.18
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	86.25
2d68_A	82	FOP, FGFR1OP; alpha helical bundle, dimer, cell cy	83.38
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	82.84

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=95.32  E-value=0.018  Score=39.77  Aligned_cols=31  Identities=23%  Similarity=0.567  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHhCCCC
Q 028628           41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEP   71 (206)
Q Consensus        41 ~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~   71 (206)
                      ++|++.|++||..+||.+++.+|.+|+++..
T Consensus        11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~   41 (88)
T 1uuj_A           11 DELNRAIADYLRSNGYEEAYSVFKKEAELDM   41 (88)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCC
Confidence            4689999999999999999999999998763

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=95.18  E-value=0.02  Score=39.71  Aligned_cols=34  Identities=29%  Similarity=0.491  Sum_probs=31.2

Q ss_pred             CCCHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCC
Q 028628           37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE   70 (206)
Q Consensus        37 ~~~~~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~   70 (206)
                      .++.+++|.+|..||...||..||-+|.+|+++.
T Consensus         2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~   35 (90)
T 2xtc_A            2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS   35 (90)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence            5677888999999999999999999999998874

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=86.25  E-value=1.5  Score=33.06  Aligned_cols=68  Identities=19%  Similarity=0.164  Sum_probs=48.6

Q ss_pred             HHHHHhhCchhhh-cccchhhhhHHHHHHHHHHcCChHHHHHHHHHhcCccccCChhHHHHHHHHHhhhcccC
Q 028628           97 IEKVNDLNPEILD-TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFED  168 (206)
Q Consensus        97 i~~~~~~~p~l~~-~~s~L~F~L~~q~fieli~~~~~~~Al~y~r~~l~~~~~~~~~~~~~i~~l~~LLay~~  168 (206)
                      ..|++.. ++..+ .=..+.|=+-++-|++||.+|...+|-+|.+++-+-+...   +.+.++.+.++..-..
T Consensus        35 ~~wv~~s-ld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~---~~~~i~~L~~i~~~~~  103 (156)
T 2nxp_A           35 KHFIECS-LDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECY---YQDDLRVLSSLTKKEH  103 (156)
T ss_dssp             HHHHHTS-CHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGG---GHHHHHHHHTCCSHHH
T ss_pred             HHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHH---HHHHHHHHhcCCCHHH
Confidence            4666653 22222 2267899999999999999999999999999877666533   3677777766544333

>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}

Probab=83.38  E-value=1.2  Score=30.06  Aligned_cols=30  Identities=23%  Similarity=0.122  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHhCCC
Q 028628           41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTE   70 (206)
Q Consensus        41 ~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~   70 (206)
                      ..++.+|.+||-..||.=|+..|..|+|.+
T Consensus        19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~   48 (82)
T 2d68_A           19 RLVASLVAEFLQFFNLDFTLAVFQPETSTL   48 (82)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence            357899999999999999999999999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=82.84  E-value=0.24  Score=42.13  Aligned_cols=54  Identities=17%  Similarity=0.320  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHcCCHHHHHHH
Q 028628           40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK   99 (206)
Q Consensus        40 ~~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~~~~~~~~~~~r~~I~~~I~~g~i~~Ai~~   99 (206)
                      +++++++|++||..+||.+++.+|.+|.+++.....      ......+.++.|+..+..
T Consensus         8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~------~~~~~~~~~~~w~~~~~l   61 (410)
T 1vyh_C            8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEEL------DKKYAGLLEKKWTSVIRL   61 (410)
T ss_dssp             ------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcch------hhhhhchhhhhhhheeeH
Confidence            356799999999999999999999999987532111      122344566777666553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	95.73
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	87.02
d2j4ba1	131	TAF5 subunit of TFIID {Encephalitozoon cuniculi [T	83.08

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.73  E-value=0.0052  Score=39.72  Aligned_cols=30  Identities=23%  Similarity=0.613  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHhCCC
Q 028628           41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTE   70 (206)
Q Consensus        41 ~~l~~lI~~YL~~~Gy~~ta~~f~~e~~~~   70 (206)
                      ++||+.|++||..+|+.+++.+|.+|+++.
T Consensus         8 eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~   37 (76)
T d1uuja_           8 DELNRAIADYLRSNGYEEAYSVFKKEAELD   37 (76)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHCCcHHHHHHHHHHHCCC
Confidence            568999999999999999999999999874

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.02  E-value=0.63  Score=33.19  Aligned_cols=68  Identities=19%  Similarity=0.133  Sum_probs=48.1

Q ss_pred             HHHHhhCchhhhcccchhhhhHHHHHHHHHHcCChHHHHHHHHHhcCccccCChhHHHHHHHHHhhhcccC
Q 028628           98 EKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFED  168 (206)
Q Consensus        98 ~~~~~~~p~l~~~~s~L~F~L~~q~fieli~~~~~~~Al~y~r~~l~~~~~~~~~~~~~i~~l~~LLay~~  168 (206)
                      .|+...-......=..+.|=+...-|++||.+|...+|..|.+++-..+...   +...|+++.++..-.+
T Consensus        29 ~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~---~~~~I~~L~~i~~~~~   96 (149)
T d2nxpa1          29 HFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECY---YQDDLRVLSSLTKKEH   96 (149)
T ss_dssp             HHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGG---GHHHHHHHHTCCSHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHH---HHHHHHHHHcCCCHHH
Confidence            3555432222222367899999999999999999999999999876666543   4677888876644433

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

Probab=83.08  E-value=1  Score=31.31  Aligned_cols=62  Identities=19%  Similarity=0.191  Sum_probs=43.3

Q ss_pred             HHHHhhCchhhhcccchhhhhHHHHHHHHHHcCChHHHHHHHHHhcCccccCChhHHHHHHHHHhh
Q 028628           98 EKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVAL  163 (206)
Q Consensus        98 ~~~~~~~p~l~~~~s~L~F~L~~q~fieli~~~~~~~Al~y~r~~l~~~~~~~~~~~~~i~~l~~L  163 (206)
                      .|+...-..-...=..+.|=+.+.-|++||.+|...+|.+|.+++-..+.    .+.++|+++.++
T Consensus        11 ~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~----~~~~~i~~L~~i   72 (131)
T d2j4ba1          11 TWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY----NKSEEIKQFESI   72 (131)
T ss_dssp             HHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC------CHHHHHHHTTC
T ss_pred             HHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH----HHHHHHHHHHcc
Confidence            56655332222223678999999999999999999999999998655442    235677777764