Citrus Sinensis ID: 028640

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPNQAQQ
Secondary Structure (PSIPRED)
ccHHHHHHHHccccEEEEEcccccEEEEEccccccEEEEEEEcHHHHHHHHHHHHHccccccccccEEEEEEcHHHHHHHcccEEEEEcccHHHHHHHHHHHHHcccccccccccEEEEEccEEEEEcccEEEEEEEcHHHHHHHHHHHHHcccccccccccccEEEEEHHHHHHHHHccccccccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccEEEEEcccccEEEEEccccccEEEEEEEcHHHHHHHHHHHHHHcHHHHccccEEEEEEHHHHEEEccccEEEEEcccHHHHHHHHHHHHHccccccccccccEEEEEEEEEEccccEEEEEEEcHHHHHHHHHHHHHHccccccccccccEEEEcHHHHHHHHHHcccccccEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
MSAEAIEERLagvpvyalsncneefVLVSgaktgkslglmcFKKEDAEALLHQMKSmdpamrkegsrvvpvplnkvfQLKVNGVAFRLIPESTQVKNALREMEkagfsddafagvpvfqsrslvlrsqnksyrpvffrKEDLEKSLRRAssdqnklnpafrmgdIQVAVFEEIIKGMKESttsawndvvfippgfdvstnpnqaqq
Flexible Loop (DISEMBL)
MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLkvngvafrlipESTQVKNALREMEKAGFSDDAFAGVPVFQsrslvlrsqnksyrpvffrkedlEKSLRrassdqnklnpafrmgdIQVAVFEEIIKGMKESTTSAWNDVVFIPPgfdvstnpnqaqq
Low Complexity Region (SEG)
MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPNQAQQ
Disordered region (IsUnstruct)
********RLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKED*********************VVPVPLNKVFQLKVNGVAFRLIPESTQVKNALR****AGFSDDAFAGVPVFQSRSLVLR*****YRPVFF*********************AFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGF***********
Disordered Region (DISOPRED)
***EAIEERLAGVPVYALSNCNEEFVLVS***TGKSLGLMCFKKEDAEALLH**************RVVPVPLNKVFQLKVNGVAFRLIPESTQVKN**************FAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSL******************IQVAVFEEIIKGMKESTTSAWNDVVFIPPG************
Disordered Region (DISEMBL)
MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLE*********QNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPNQAQQ
Disordered Region (DISPRO)
MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFD**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPNQAQQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
F4J469	313	Protein TIC 22-like, chlo	yes	no	0.985	0.648	0.768	3e-87
Q9ZST9	252	Protein TIC 22, chloropla	N/A	no	0.907	0.742	0.451	3e-40
Q9SZB2	268	Protein TIC 22, chloropla	no	no	0.888	0.682	0.441	2e-38

>sp|F4J469|TI22L_ARATH Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana GN=TIC22L PE=3 SV=1

 Score =  321 bits (822), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 156/203 (76%), Positives = 178/203 (87%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           +SA+AIEERLAGVPVYALSN NEEFVLVSG  +GKSLGL+  K+EDAE LL +MKSMDP 
Sbjct: 110 LSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPR 169

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQS 120
           MRKEGS+VV + L+KVFQLKVNGVAFRLIPESTQVKNAL+E + AG  DD F GVPVFQS
Sbjct: 170 MRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQS 229

Query: 121 RSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 180
           +SL+LRS+N SYRPVFFRKEDLEKSL RASS QN+LNPA + GDIQVAVFE+I+KGM+ES
Sbjct: 230 KSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFEDIVKGMRES 289

Query: 181 TTSAWNDVVFIPPGFDVSTNPNQ 203
           TTS W+D+VFIPPGF+VST   Q
Sbjct: 290 TTSNWDDIVFIPPGFEVSTEQTQ 312

Involved in protein precursor import into chloroplasts.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZST9|TIC22_PEA Protein TIC 22, chloroplastic OS=Pisum sativum GN=TIC22 PE=1 SV=1

 Score =  164 bits (415), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/195 (45%), Positives = 128/195 (65%), Gaps = 8/195 (4%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           ++   + + LAG  VY +SN + EFVL+S A+  KS+GL+CF++EDAEA L Q++S    
Sbjct: 53  LTPNHVAKSLAGTSVYTVSNSDNEFVLMSDAEGAKSIGLLCFRQEDAEAFLAQVRSRKKE 112

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQS 120
            R  G++VVP+ L++V+ LKV G+AFR +P+  Q+KNAL E+  A  +  +F GVPVFQS
Sbjct: 113 FRG-GAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNAL-ELRAA--NRGSFDGVPVFQS 168

Query: 121 RSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 180
             LV++ +NK Y PV+F KEDLE  L + S     +  +     I V  FE+++K M+ S
Sbjct: 169 DLLVVKKKNKRYCPVYFSKEDLEYELSKVSRSSKGVGVS---QHIMVGSFEDVLKKMELS 225

Query: 181 -TTSAWNDVVFIPPG 194
             +S W D+VFIPPG
Sbjct: 226 EKSSGWEDLVFIPPG 240

Involved in protein precursor import into chloroplasts. Imported into the intermembrane space via the Toc translocon. May be involved in the import pathway used by proteins without a cleavable N-terminal pre-sequence.

Pisum sativum (taxid: 3888)

>sp|Q9SZB2|TIC22_ARATH Protein TIC 22, chloroplastic OS=Arabidopsis thaliana GN=TIC22 PE=1 SV=1

 Score =  158 bits (400), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/197 (44%), Positives = 129/197 (65%), Gaps = 14/197 (7%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           +S   + + LAG  V+ +SN N EFVL+S    GKS+GL+CF++EDAEA L Q +     
Sbjct: 70  LSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAFLAQARLRRRE 129

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQS 120
           + K  ++VVP+ L++V+ LKV G++FR +P+  Q+KNAL E++ +G + + F GVPVFQS
Sbjct: 130 L-KTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNAL-ELKSSG-NKNGFDGVPVFQS 186

Query: 121 RSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAV--FEEIIKGMK 178
             LV+R +N+ Y PV+F KED+E+ L       +K   A R GD Q+ V   E++++ M+
Sbjct: 187 ELLVVRKKNRRYCPVYFSKEDIEREL-------SKYTRASR-GDQQIMVGSLEDVLRKME 238

Query: 179 ES-TTSAWNDVVFIPPG 194
            S   S W DV+FIPPG
Sbjct: 239 MSEKNSGWEDVIFIPPG 255

Involved in protein precursor import into chloroplasts. Imported into the intermembrane space via the Toc translocon. May be involved in the import pathway used by proteins without a cleavable N-terminal pre-sequence.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
224065274	299	predicted protein [Populus trichocarpa]	0.975	0.672	0.805	6e-90
297831142	314	hypothetical protein ARALYDRAFT_479887 [	0.985	0.646	0.773	3e-86
15229502	313	Tic22-like family protein [Arabidopsis t	0.985	0.648	0.768	1e-85
225463323	293	PREDICTED: protein TIC 22-like, chloropl	0.990	0.696	0.760	2e-84
9293945	320	unnamed protein product [Arabidopsis tha	0.985	0.634	0.747	8e-84
449441171	301	PREDICTED: protein TIC 22-like, chloropl	0.980	0.671	0.729	8e-82
356512421	253	PREDICTED: uncharacterized protein LOC10	0.980	0.798	0.684	2e-77
219363709	285	uncharacterized protein LOC100216723 [Ze	0.951	0.687	0.597	1e-58
242043704	289	hypothetical protein SORBIDRAFT_02g00935	0.922	0.657	0.603	6e-58
326510179	288	predicted protein [Hordeum vulgare subsp	0.917	0.656	0.561	7e-58

>gi|224065274|ref|XP_002301750.1| predicted protein [Populus trichocarpa] gi|222843476|gb|EEE81023.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (859), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 162/201 (80%), Positives = 178/201 (88%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           MS E IEERLAGVPVYALSN NEEFVLVSG  TGKSLGL CFK+EDAEALL QMKSMDP 
Sbjct: 96  MSTETIEERLAGVPVYALSNSNEEFVLVSGLSTGKSLGLFCFKQEDAEALLEQMKSMDPG 155

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQS 120
           MRK GS+VVPV LNKVFQLKV+GVAFRLIPE +QVKNAL E E+AG SDD F+GVPVFQS
Sbjct: 156 MRKGGSKVVPVALNKVFQLKVDGVAFRLIPEPSQVKNALMERERAGLSDDCFSGVPVFQS 215

Query: 121 RSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 180
           RSLVL+SQN+SYRPVFFRKEDLEKSL RAS +Q+K+NPAF+ GDI+VAVFEEIIK MKE 
Sbjct: 216 RSLVLKSQNRSYRPVFFRKEDLEKSLLRASREQHKVNPAFKQGDIEVAVFEEIIKCMKEG 275

Query: 181 TTSAWNDVVFIPPGFDVSTNP 201
           + + W+DVVFIPPGFDVST P
Sbjct: 276 SATTWDDVVFIPPGFDVSTTP 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831142|ref|XP_002883453.1| hypothetical protein ARALYDRAFT_479887 [Arabidopsis lyrata subsp. lyrata] gi|297329293|gb|EFH59712.1| hypothetical protein ARALYDRAFT_479887 [Arabidopsis lyrata subsp. lyrata]

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 157/203 (77%), Positives = 178/203 (87%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           ++A+AIEERLAGVPVYALSN NEEFVLVSG  +GKSLGL+  K+EDAE LL QMKSMDP 
Sbjct: 111 LTADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKQMKSMDPR 170

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQS 120
           MRKEGS+VV + L+KVFQLKVNGVAFRLIPESTQVKNAL+E + AG  DD F GVPVFQS
Sbjct: 171 MRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQS 230

Query: 121 RSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 180
           +SL+LRS+N SYRPVFFRKEDLEKSL RASS QN+LNPA + GDIQVAVFE+I+KGMKES
Sbjct: 231 KSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFEDIVKGMKES 290

Query: 181 TTSAWNDVVFIPPGFDVSTNPNQ 203
           TTS W+D+VFIPPGF+VST   Q
Sbjct: 291 TTSNWDDIVFIPPGFEVSTEQTQ 313

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229502|ref|NP_189013.1| Tic22-like family protein [Arabidopsis thaliana] gi|353678135|sp|F4J469.1|TI22L_ARATH RecName: Full=Protein TIC 22-like, chloroplastic; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 22-III; Short=AtTIC22-III; Flags: Precursor gi|332643283|gb|AEE76804.1| Tic22-like family protein [Arabidopsis thaliana]

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 156/203 (76%), Positives = 178/203 (87%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           +SA+AIEERLAGVPVYALSN NEEFVLVSG  +GKSLGL+  K+EDAE LL +MKSMDP 
Sbjct: 110 LSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPR 169

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQS 120
           MRKEGS+VV + L+KVFQLKVNGVAFRLIPESTQVKNAL+E + AG  DD F GVPVFQS
Sbjct: 170 MRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQS 229

Query: 121 RSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 180
           +SL+LRS+N SYRPVFFRKEDLEKSL RASS QN+LNPA + GDIQVAVFE+I+KGM+ES
Sbjct: 230 KSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFEDIVKGMRES 289

Query: 181 TTSAWNDVVFIPPGFDVSTNPNQ 203
           TTS W+D+VFIPPGF+VST   Q
Sbjct: 290 TTSNWDDIVFIPPGFEVSTEQTQ 312

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463323|ref|XP_002268264.1| PREDICTED: protein TIC 22-like, chloroplastic [Vitis vinifera]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 156/205 (76%), Positives = 176/205 (85%), Gaps = 1/205 (0%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           M A AIEERLAGVPVYALSN ++EFVLVSG +TGKSLGL C KKEDAE LL QMK MDP 
Sbjct: 85  MPASAIEERLAGVPVYALSNSSDEFVLVSGVRTGKSLGLFCLKKEDAETLLEQMKLMDPG 144

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQS 120
           MR +GS+VV V LNKVFQLK++GVAFRL+P+STQVKNALR MEKAGFSDD F+GVPVFQS
Sbjct: 145 MR-QGSKVVAVALNKVFQLKLDGVAFRLMPDSTQVKNALRVMEKAGFSDDGFSGVPVFQS 203

Query: 121 RSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 180
           RSL+L+SQ+K YRPVFFRKEDLE SL  AS+ QN+LNPAFR GDIQVAVFEEIIKGM+E+
Sbjct: 204 RSLILQSQDKKYRPVFFRKEDLENSLLSASNQQNRLNPAFRQGDIQVAVFEEIIKGMQEN 263

Query: 181 TTSAWNDVVFIPPGFDVSTNPNQAQ 205
            +  W+DVVFIPPGFD S +  Q Q
Sbjct: 264 ASRQWDDVVFIPPGFDASISSPQQQ 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9293945|dbj|BAB01848.1| unnamed protein product [Arabidopsis thaliana]

 Score =  315 bits (807), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 157/210 (74%), Positives = 178/210 (84%), Gaps = 7/210 (3%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           +SA+AIEERLAGVPVYALSN NEEFVLVSG  +GKSLGL+  K+EDAE LL +MKSMDP 
Sbjct: 110 LSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPR 169

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNAL-------REMEKAGFSDDAFA 113
           MRKEGS+VV + L+KVFQLKVNGVAFRLIPESTQVKNAL       RE + AG  DD F 
Sbjct: 170 MRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKFCMWIQRERKTAGIDDDDFH 229

Query: 114 GVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEI 173
           GVPVFQS+SL+LRS+N SYRPVFFRKEDLEKSL RASS QN+LNPA + GDIQVAVFE+I
Sbjct: 230 GVPVFQSKSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFEDI 289

Query: 174 IKGMKESTTSAWNDVVFIPPGFDVSTNPNQ 203
           +KGM+ESTTS W+D+VFIPPGF+VST   Q
Sbjct: 290 VKGMRESTTSNWDDIVFIPPGFEVSTEQTQ 319

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441171|ref|XP_004138357.1| PREDICTED: protein TIC 22-like, chloroplastic-like [Cucumis sativus] gi|449496760|ref|XP_004160220.1| PREDICTED: protein TIC 22-like, chloroplastic-like [Cucumis sativus]

 Score =  308 bits (789), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 148/203 (72%), Positives = 172/203 (84%), Gaps = 1/203 (0%)

Query: 3   AEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMR 62
            EAIE+RLAG+PVYALSN +EEFVLVSGA   KSLGL CFKK+DAE LL  + +MDP+ R
Sbjct: 100 TEAIEKRLAGIPVYALSNASEEFVLVSGASAQKSLGLFCFKKDDAETLLQHIGTMDPSAR 159

Query: 63  KEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRS 122
             GS+VVPV LNKVFQL VNGVAFRLIPE +QVKNAL E +KAG S D F+GVPVFQS+S
Sbjct: 160 Y-GSKVVPVALNKVFQLNVNGVAFRLIPECSQVKNALTERKKAGISADGFSGVPVFQSKS 218

Query: 123 LVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTT 182
           L+LR QNKSYRP FFRKEDLE SL+RAS +QN++NPA R GDIQVAVFEEIIKGMK+++ 
Sbjct: 219 LILRVQNKSYRPAFFRKEDLENSLQRASREQNQINPALRPGDIQVAVFEEIIKGMKDNSI 278

Query: 183 SAWNDVVFIPPGFDVSTNPNQAQ 205
           S W+D+VFIPPGFDVST+P + Q
Sbjct: 279 STWDDIVFIPPGFDVSTDPKKQQ 301

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512421|ref|XP_003524917.1| PREDICTED: uncharacterized protein LOC100811136 [Glycine max]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 139/203 (68%), Positives = 173/203 (85%), Gaps = 1/203 (0%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           M+ EAIEERL G+PVYALSN +EEF+LVSG+ +GK+LGL CF K+DAEALL+Q+  +DP 
Sbjct: 51  MTVEAIEERLEGIPVYALSNASEEFLLVSGSSSGKNLGLFCFNKDDAEALLNQVTLIDPH 110

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQS 120
            R +GS+VVPV LNKVFQLKVNGVAFRLIPE +QVKNAL+E EK+GF+   F+GVPVFQS
Sbjct: 111 AR-QGSKVVPVALNKVFQLKVNGVAFRLIPEFSQVKNALQEREKSGFASSGFSGVPVFQS 169

Query: 121 RSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 180
           RSL+L+SQNK +RP+FFRKEDLE +L+ A+ +QNKLNP  R GDIQVA  E++IK MKE+
Sbjct: 170 RSLILKSQNKRFRPLFFRKEDLENTLKSAAREQNKLNPTMRKGDIQVATLEDVIKEMKEN 229

Query: 181 TTSAWNDVVFIPPGFDVSTNPNQ 203
           +TS W+DV+FIPPGFDVS + N+
Sbjct: 230 STSNWDDVIFIPPGFDVSDDSNE 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219363709|ref|NP_001136600.1| uncharacterized protein LOC100216723 [Zea mays] gi|194696322|gb|ACF82245.1| unknown [Zea mays] gi|414884262|tpg|DAA60276.1| TPA: hypothetical protein ZEAMMB73_963062 [Zea mays]

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 126/211 (59%), Positives = 155/211 (73%), Gaps = 15/211 (7%)

Query: 6   IEERLAGVPVYALSNCNEEFVLVSGAKTG----------KSLGLMCFKKEDAEALLHQMK 55
           IEERLAGVPVYAL+N  +EFVLVS  + G          ++LGL+CF+KEDA+ALL QM 
Sbjct: 76  IEERLAGVPVYALANAAQEFVLVSSTRVGGQGGESVSPTQALGLLCFRKEDADALLEQM- 134

Query: 56  SMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAG-FSDDAFAG 114
             D  MR  GS VVPV LNKV Q+K +GVAFR +P+S+QV NA++ M+  G ++ + F G
Sbjct: 135 --DGDMRA-GSGVVPVALNKVIQMKSDGVAFRFLPDSSQVANAIKLMQDEGLYAGEGFPG 191

Query: 115 VPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEII 174
           VPVFQSRSLVL S NK YRPVFFRKEDL+ SL R S DQ K NPA R GD QV+  E+II
Sbjct: 192 VPVFQSRSLVLMSDNKRYRPVFFRKEDLDNSLHRTSRDQQKPNPAVRFGDTQVSSLEDII 251

Query: 175 KGMKESTTSAWNDVVFIPPGFDVSTNPNQAQ 205
           K MK+S++S W+DVVFIPPGFD++T    +Q
Sbjct: 252 KSMKDSSSSKWDDVVFIPPGFDLATGSTPSQ 282

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242043704|ref|XP_002459723.1| hypothetical protein SORBIDRAFT_02g009350 [Sorghum bicolor] gi|241923100|gb|EER96244.1| hypothetical protein SORBIDRAFT_02g009350 [Sorghum bicolor]

 Score =  229 bits (583), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 125/207 (60%), Positives = 152/207 (73%), Gaps = 17/207 (8%)

Query: 6   IEERLAGVPVYALSNCNEEFVLVSGAKTG------------KSLGLMCFKKEDAEALLHQ 53
           IEERLAGVPVYAL+N  +EFVLVS  + G             +LGL+CF+KEDA+ALL Q
Sbjct: 78  IEERLAGVPVYALANAAQEFVLVSSTRVGGQGGEGVRVRPPPALGLLCFRKEDADALLEQ 137

Query: 54  MKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAG-FSDDAF 112
           M+     MR  GS VVPV LNKV QLK +GVAFR +P+S+QV NA++ M+  G ++ + F
Sbjct: 138 MEG---DMRA-GSSVVPVALNKVIQLKSDGVAFRFLPDSSQVANAIKLMQDEGLYAREGF 193

Query: 113 AGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEE 172
            GVPVFQSRSLVL S NK YRPVFFRKEDL+ SL R S DQ K NPA R GD QV+  E+
Sbjct: 194 PGVPVFQSRSLVLMSDNKRYRPVFFRKEDLDNSLHRTSRDQQKPNPAVRFGDTQVSSLED 253

Query: 173 IIKGMKESTTSAWNDVVFIPPGFDVST 199
           IIK MK+S++S W+DVVFIPPGFD++T
Sbjct: 254 IIKSMKDSSSSKWDDVVFIPPGFDLAT 280

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326510179|dbj|BAJ87306.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 118/210 (56%), Positives = 149/210 (70%), Gaps = 21/210 (10%)

Query: 6   IEERLAGVPVYALSNCNEEFVLVS----------------GAKTGKSLGLMCFKKEDAEA 49
           IE+RLAGVPVYAL+N  +EF+LVS                 A+   +LG++CF++EDA  
Sbjct: 73  IEDRLAGVPVYALANSAQEFILVSKTHRGGGGDAGGGVGGSARHPPALGMLCFRREDANM 132

Query: 50  LLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAG-FS 108
           LL QM      MR  GS VVPV LNKV QLK +GVAFR +P+ +QV NA++ M+  G F 
Sbjct: 133 LLAQMGD---DMRA-GSTVVPVALNKVVQLKSDGVAFRFLPDPSQVANAIKLMQDGGEFV 188

Query: 109 DDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVA 168
           ++ F GVPVFQSRSLVLR+ NK YRPVFFRKEDL+KSL RASSDQ K  PA R+GD QV+
Sbjct: 189 NEGFPGVPVFQSRSLVLRNDNKRYRPVFFRKEDLDKSLHRASSDQQKPIPAVRIGDTQVS 248

Query: 169 VFEEIIKGMKESTTSAWNDVVFIPPGFDVS 198
             E+II  MK+S++S W+D VF+PPGFD++
Sbjct: 249 SLEDIITSMKDSSSSKWDDAVFVPPGFDIA 278

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2095213	313	Tic22-III "translocon at the i	0.985	0.648	0.768	8.7e-79
TAIR|locus:2119146	268	Tic22-IV "translocon at the in	0.888	0.682	0.441	3.9e-37
UNIPROTKB|Q55386	286	slr0924 "Slr0924 protein" [Syn	0.868	0.625	0.227	5.3e-05

TAIR|locus:2095213 Tic22-III "translocon at the inner envelope membrane of chloroplasts 22-III" [Arabidopsis thaliana (taxid:3702)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 156/203 (76%), Positives = 178/203 (87%)

Query:     1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
             +SA+AIEERLAGVPVYALSN NEEFVLVSG  +GKSLGL+  K+EDAE LL +MKSMDP 
Sbjct:   110 LSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPR 169

Query:    61 MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQS 120
             MRKEGS+VV + L+KVFQLKVNGVAFRLIPESTQVKNAL+E + AG  DD F GVPVFQS
Sbjct:   170 MRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALKERKTAGIDDDDFHGVPVFQS 229

Query:   121 RSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 180
             +SL+LRS+N SYRPVFFRKEDLEKSL RASS QN+LNPA + GDIQVAVFE+I+KGM+ES
Sbjct:   230 KSLILRSENMSYRPVFFRKEDLEKSLIRASSQQNRLNPALKPGDIQVAVFEDIVKGMRES 289

Query:   181 TTSAWNDVVFIPPGFDVSTNPNQ 203
             TTS W+D+VFIPPGF+VST   Q
Sbjct:   290 TTSNWDDIVFIPPGFEVSTEQTQ 312

GO:0009507 "chloroplast" evidence=ISM

GO:0009706 "chloroplast inner membrane" evidence=ISS

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2119146 Tic22-IV "translocon at the inner envelope membrane of chloroplasts 22-IV" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 87/197 (44%), Positives = 129/197 (65%)

Query:     1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
             +S   + + LAG  V+ +SN N EFVL+S    GKS+GL+CF++EDAEA L Q +     
Sbjct:    70 LSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAFLAQARLRRRE 129

Query:    61 MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQS 120
             + K  ++VVP+ L++V+ LKV G++FR +P+  Q+KNAL E++ +G + + F GVPVFQS
Sbjct:   130 L-KTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNAL-ELKSSG-NKNGFDGVPVFQS 186

Query:   121 RSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAV--FEEIIKGMK 178
               LV+R +N+ Y PV+F KED+E+ L       +K   A R GD Q+ V   E++++ M+
Sbjct:   187 ELLVVRKKNRRYCPVYFSKEDIEREL-------SKYTRASR-GDQQIMVGSLEDVLRKME 238

Query:   179 EST-TSAWNDVVFIPPG 194
              S   S W DV+FIPPG
Sbjct:   239 MSEKNSGWEDVIFIPPG 255

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|Q55386 slr0924 "Slr0924 protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 117 (46.2 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 47/207 (22%), Positives = 91/207 (43%)

Query:     1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
             +  E + + L GVPV+ + +     ++  G    K  G+    +++A   L ++K   P 
Sbjct:    76 LPTEEVVKILQGVPVFTIVDAQGAPLVAVGNDNEKVTGVF-ISQQEANGFLQELKKQKPD 134

Query:    61 MRKEGSRVVPVPLNKVFQL-KVNG-----VAFRLIPESTQVKNALREMEKAGFSDDAFAG 114
             +  + S V PV L +V ++ + N      + F  +P   QV+ A ++M  + +      G
Sbjct:   135 VGSQVS-VQPVSLGEVVKIAQANANQTDPLGFAYVPIPAQVQ-AAQQMPNSEYQ----GG 188

Query:   115 VPVFQSRS------LVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGD---I 165
             VP+F +R       L ++ +N+   P F     +++ + R   +Q    PA  M D   I
Sbjct:   189 VPLFVARGGEDQGYLTIQQENEQIIPFFLEASQIQQMVERFKQEQ----PA--MADSIVI 242

Query:   166 QVAVFEEIIKGMKESTTSAWNDVVFIP 192
              V   E +I  ++ S  +    +  +P
Sbjct:   243 DVIAMENVISTLQTSDDAMLKQIRIVP 269


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      206       206   0.00097  111 3  11 22  0.37    33
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  146 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.06u 0.08s 18.14t   Elapsed:  00:00:03
  Total cpu time:  18.06u 0.08s 18.14t   Elapsed:  00:00:04
  Start:  Sat May 11 05:10:36 2013   End:  Sat May 11 05:10:40 2013

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4J469	TI22L_ARATH	No assigned EC number	0.7684	0.9854	0.6485	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_II2341 hypothetical protein (299 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
pfam04278	270	pfam04278, Tic22, Tic22-like family	6e-67
TIGR00995	270	TIGR00995, 3a0901s06TIC22, chloroplast protein imp	7e-46

>gnl|CDD|218002 pfam04278, Tic22, Tic22-like family

 Score =  206 bits (525), Expect = 6e-67
 Identities = 89/205 (43%), Positives = 131/205 (63%), Gaps = 15/205 (7%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTG-KSLGLMCFKKEDAEALLHQMKSMDP 59
           +S + + E+LAGVPV+ ++N N E +LVSG   G KS+GL+ F +EDAEA L ++K  +P
Sbjct: 59  LSEDEVAEKLAGVPVFTITNSNGEPLLVSGKNGGGKSVGLLFFSQEDAEAFLKELKKQNP 118

Query: 60  AMRKEGSRVVPVPLNKVFQL------KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFA 113
            +   G++VVP+ L +V++L      KV G+AFR +P+  QVKNAL  ++K G + + F 
Sbjct: 119 EL-ASGAKVVPISLGQVYKLAQSNQKKVEGLAFRFVPDPKQVKNALELLKKNGQNVNDFR 177

Query: 114 GVPVFQSRS----LVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAV 169
           GVPVFQ+RS    L ++  NK Y P FF KEDL++ L RA   Q  L  + +   I+V  
Sbjct: 178 GVPVFQARSGEGYLTIQQDNKQYIPFFFSKEDLQRMLDRAKRQQPDLASSVK---IEVIS 234

Query: 170 FEEIIKGMKESTTSAWNDVVFIPPG 194
            E+++K M  S  S W+ ++FIPPG
Sbjct: 235 LEDVLKKMLTSDDSEWDKIIFIPPG 259

The preprotein translocation at the inner envelope membrane of chloroplasts so far involves five proteins: Tic110, Tic55, Tic40, Tic22 (this family) and Tic20. The molecular function of these proteins has not yet been established. Length = 270

>gnl|CDD|233226 TIGR00995, 3a0901s06TIC22, chloroplast protein import component, Tic22 family

 Score =  152 bits (385), Expect = 7e-46
 Identities = 78/195 (40%), Positives = 120/195 (61%), Gaps = 8/195 (4%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPA 60
           +  E + + LAG  V+ +SN   EFVL S     KS+GL+CF++EDAEA L Q++   P 
Sbjct: 70  LPPEEVAKILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQEDAEAFLAQLRKRKPE 129

Query: 61  MRKEGSRVVPVPLNKVFQLKVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQS 120
           +    ++VVP+ L++V++LKV G+ FR +P+  Q+KNAL E+  A  + + F GVPVFQS
Sbjct: 130 VGS-QAKVVPITLDQVYKLKVEGIGFRFLPDPAQIKNAL-ELPAA--NSEYFDGVPVFQS 185

Query: 121 RSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKES 180
             LV++ +N+ Y PV+F KED+E+ L +   +   +  +     I V   E+++  M+ S
Sbjct: 186 GLLVVQKKNERYCPVYFSKEDIEQELSKFKRESPGMADSQV---IMVGSMEDVLSKMETS 242

Query: 181 -TTSAWNDVVFIPPG 194
              S W D +FIPPG
Sbjct: 243 EKDSGWEDQIFIPPG 257

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein [Transport and binding proteins, Amino acids, peptides and amines]. Length = 270

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
PF04278	274	Tic22: Tic22-like family; InterPro: IPR007378 Chlo	100.0
TIGR00995	270	3a0901s06TIC22 chloroplast protein import componen	100.0
PF04278	274	Tic22: Tic22-like family; InterPro: IPR007378 Chlo	99.19
TIGR00995	270	3a0901s06TIC22 chloroplast protein import componen	99.0
PF11360	86	DUF3110: Protein of unknown function (DUF3110); In	93.93
PF11572	103	DUF3234: Protein of unknown function (DUF3234); In	87.8
PF07179	124	SseB: SseB protein N-terminal domain; InterPro: IP	81.95
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	80.09

>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane

Probab=100.00  E-value=4.9e-59  Score=406.11  Aligned_cols=201  Identities=43%  Similarity=0.720  Sum_probs=156.3

Q ss_pred             CCHHHHHHhcCCCcEEEEEcCCCCeEEEeccCC-CceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh
Q 028640            1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKT-GKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL   79 (206)
Q Consensus         1 L~~~~I~ekL~~VPVF~vtn~~g~~~l~~~~~~-~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l   79 (206)
                      ||+++|++||++||||+|||++|+|++++.+++ ++++++||||++||++||+++++++|+++++ +||++|+|++||++
T Consensus        63 L~~~~V~~kL~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~s~~dA~~~L~~lk~~~p~~~~~-~kV~pvsL~~vY~l  141 (274)
T PF04278_consen   63 LPEEEVEEKLAGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFFSQQDAEAFLAQLKKSNPELASG-AKVVPVSLGKVYQL  141 (274)
T ss_dssp             --HHHHHHHHTTSEEEEEE-TT--B-----TTS--SEEEEEES-HHHHHHHHHHHHH-SSHHHTT--EEEEEEHHHHHHH
T ss_pred             CCHHHHHHHhcCceEEEEECCCCCEEEeccCCCCCceEEEEEecHHHHHHHHHHHhhhCccccCc-eEEEEecHHHHHHH
Confidence            789999999999999999999999999998874 7999999999999999999999999999888 99999999999999


Q ss_pred             ------ccCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecc----eeEeeCCeeEeeeeecHHHHHHHHHHH
Q 028640           80 ------KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRS----LVLRSQNKSYRPVFFRKEDLEKSLRRA  149 (206)
Q Consensus        80 ------~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~----Lti~~~~~~~~PlFF~kedl~~~l~~~  149 (206)
                            +.+++.|+|+|+++||++|+++++++|+.+++|+|||||++++    ||++++|++++|+||+||||+++|+++
T Consensus       142 ~~~~~~k~~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~~~Lti~~~~~~~iPlFF~kedL~~~l~k~  221 (274)
T PF04278_consen  142 AQENKKKPEGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVPVFYAEGGKGYLTIKQDNKRIIPLFFDKEDLQAALEKA  221 (274)
T ss_dssp             HHHTTT-TT-EEEEEE--HHHHHHHHHHHHTTT---S---S-EEEEEESST-B-EETTTTEEEEEEESSHHHHHHHHHHH
T ss_pred             HHHhhcCCcCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeEEEEEcCCCceEEEeeCCeEEEEEEecHHHHHHHHHHH
Confidence                  5789999999999999999999999999888999999999999    999999999999999999999999999


Q ss_pred             hhcccccCCCCccCcEEEEeHHHHHHhhhcCCCCCCceEEEecCcccccCCccccc
Q 028640          150 SSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPNQAQ  205 (206)
Q Consensus       150 ~~~~~~~~p~~~~~~I~V~~Le~vi~~m~~~~~~~~~~i~fiPp~~s~~~~~~~~~  205 (206)
                      +++++++++   +++|+|++|+++|++|++++|++|++++||||++|++.+.+.+|
T Consensus       222 ~kq~p~~~~---~~~I~V~~Le~vI~~m~~~~d~~~~~i~fiP~~es~~~i~~~~~  274 (274)
T PF04278_consen  222 KKQQPDLAK---EPKIQVVSLEDVIKTMEESDDSDLKKIVFIPPGESLEFIQSLKQ  274 (274)
T ss_dssp             TTT-TT--------EEEEEEHHHHHHHHHH---GGGGGEEEE--HHHHHHHHTS--
T ss_pred             HHhCCCCcC---CceEEEEcHHHHHHHHhcCCCCCcceEEEECCHHHHHHHHHhcC
Confidence            999865443   68899999999999999999999999999999999999866544

This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.

>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family

Probab=100.00  E-value=8.2e-57  Score=388.23  Aligned_cols=198  Identities=35%  Similarity=0.631  Sum_probs=180.5

Q ss_pred             CCHHHHHHhcCCCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhc
Q 028640            1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK   80 (206)
Q Consensus         1 L~~~~I~ekL~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~   80 (206)
                      ||++||+++|++||||+|+|++|+||+++.+++++++|+||++++||++||+++|++||+++++ +||++++||+||+++
T Consensus        70 L~e~eV~ekL~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~qedA~afL~~lk~~~p~l~~~-~kV~pvsL~~vYkl~  148 (270)
T TIGR00995        70 LPPEEVAKILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQEDAEAFLAQLRKRKPEVGSQ-AKVVPITLDQVYKLK  148 (270)
T ss_pred             CCHHHHHHHhcCCceEEEEcCCCCeEEEECCCCCceEEEEECCHHHHHHHHHHHHhhCccccCC-ceEEEEEHHHHHHHh
Confidence            7999999999999999999999999999999888999999888888999999999999999988 999999999999999


Q ss_pred             cCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeEeeeeecHHHHHHHHHHHhhcccccCCCC
Q 028640           81 VNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAF  160 (206)
Q Consensus        81 ~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~~PlFF~kedl~~~l~~~~~~~~~~~p~~  160 (206)
                      .+++.|+|+|+++||++|++++ ++++  ++++|||||++++||++++|++|||+||+||||+++|+++++++|+++.  
T Consensus       149 ~e~l~F~fiP~~~qV~~A~~ll-~~~~--~~~~GVPlF~~~~Lti~~~n~~~iP~FF~Kedlq~~L~~~kkq~p~l~~--  223 (270)
T TIGR00995       149 VEGIGFRFLPDPAQIKNALELP-AANS--EYFDGVPVFQSGLLVVQKKNERYCPVYFSKEDIEQELSKFKRESPGMAD--  223 (270)
T ss_pred             hcCccEEEeCCHHHHHHHHHHH-hcCc--cCCCCccEEeecceEEEeCCeEEEeeEeeHHHHHHHHHHHhHhCcCcCC--
Confidence            8899999999999999999999 3344  5678999999999999999999999999999999999999999854333  


Q ss_pred             ccCcEEEEeHHHHHHhhhcC--CCCCCceEEEecCcccccCCccccc
Q 028640          161 RMGDIQVAVFEEIIKGMKES--TTSAWNDVVFIPPGFDVSTNPNQAQ  205 (206)
Q Consensus       161 ~~~~I~V~~Le~vi~~m~~~--~~~~~~~i~fiPp~~s~~~~~~~~~  205 (206)
                       +.+|+|++||+||++|+++  +|.+.++|.|+|+.++++..++.++
T Consensus       224 -~~~I~V~~Le~vi~~m~~~~~~~~~~~~I~l~Ps~e~~~~iq~~~~  269 (270)
T TIGR00995       224 -SQVIMVGSMEDVLSKMETSEKDSGWEDQIFIPPGQEAIQHMQSLIA  269 (270)
T ss_pred             -CccEEEEeHHHHHHHHhccCCCCcccceEEECCCHHHHHHHHHHhc
Confidence             6889999999999999985  7778888888888888876655443

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.

>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane

Probab=99.19  E-value=5.3e-11  Score=104.30  Aligned_cols=90  Identities=23%  Similarity=0.343  Sum_probs=64.7

Q ss_pred             HhcCCCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh--ccCC--
Q 028640            8 ERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL--KVNG--   83 (206)
Q Consensus         8 ekL~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l--~~~~--   83 (206)
                      +.+.|||||.+.++.  .+++... +++.+.+|||+++|+++.++++++++|+++.. .+|.+++|+.+++.  .+++  
T Consensus       178 ~~f~GVPvF~~~~~~--~~Lti~~-~~~~~iPlFF~kedL~~~l~k~~kq~p~~~~~-~~I~V~~Le~vI~~m~~~~d~~  253 (274)
T PF04278_consen  178 KQFQGVPVFYAEGGK--GYLTIKQ-DNKRIIPLFFDKEDLQAALEKAKKQQPDLAKE-PKIQVVSLEDVIKTMEESDDSD  253 (274)
T ss_dssp             S---S-EEEEEESST---B-EETT-TTEEEEEEESSHHHHHHHHHHHTTT-TT------EEEEEEHHHHHHHHHH---GG
T ss_pred             ccCCCeEEEEEcCCC--ceEEEee-CCeEEEEEEecHHHHHHHHHHHHHhCCCCcCC-ceEEEEcHHHHHHHHhcCCCCC
Confidence            557899999999988  5555544 56888889999999999999999999999988 99999999999976  2222  


Q ss_pred             -eeEEEecCHHHHHHHHHH
Q 028640           84 -VAFRLIPESTQVKNALRE  101 (206)
Q Consensus        84 -~~f~~vP~~~qv~~A~~l  101 (206)
                       -.+.|||+.+.+++++++
T Consensus       254 ~~~i~fiP~~es~~~i~~~  272 (274)
T PF04278_consen  254 LKKIVFIPPGESLEFIQSL  272 (274)
T ss_dssp             GGGEEEE--HHHHHHHHTS
T ss_pred             cceEEEECCHHHHHHHHHh
Confidence             689999999999999765

This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.

>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family

Probab=99.00  E-value=2.2e-09  Score=93.53  Aligned_cols=85  Identities=19%  Similarity=0.328  Sum_probs=71.6

Q ss_pred             CCCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh-cc---CC---
Q 028640           11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-KV---NG---   83 (206)
Q Consensus        11 ~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l-~~---~~---   83 (206)
                      .|||||.+     +.+.+. . +++.+.+|||+++|+++.|+++|+++|+++.+ .+|.+++|+.+.+. ..   ++   
T Consensus       178 ~GVPlF~~-----~~Lti~-~-~n~~~iP~FF~Kedlq~~L~~~kkq~p~l~~~-~~I~V~~Le~vi~~m~~~~~~~~~~  249 (270)
T TIGR00995       178 DGVPVFQS-----GLLVVQ-K-KNERYCPVYFSKEDIEQELSKFKRESPGMADS-QVIMVGSMEDVLSKMETSEKDSGWE  249 (270)
T ss_pred             CCccEEee-----cceEEE-e-CCeEEEeeEeeHHHHHHHHHHHhHhCcCcCCC-ccEEEEeHHHHHHHHhccCCCCccc
Confidence            58999999     344443 3 56788889999999999999999999999999 99999999999976 22   22   


Q ss_pred             eeEEEecCHHHHHHHHHHHH
Q 028640           84 VAFRLIPESTQVKNALREME  103 (206)
Q Consensus        84 ~~f~~vP~~~qv~~A~~l~~  103 (206)
                      -.+.|+|+.+.+++++++.+
T Consensus       250 ~~I~l~Ps~e~~~~iq~~~~  269 (270)
T TIGR00995       250 DQIFIPPGQEAIQHMQSLIA  269 (270)
T ss_pred             ceEEECCCHHHHHHHHHHhc
Confidence            67889999999999998753

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.

>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function

Probab=93.93  E-value=0.52  Score=34.54  Aligned_cols=73  Identities=18%  Similarity=0.284  Sum_probs=51.1

Q ss_pred             EEEEE---cCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh-ccCCeeEEEec
Q 028640           15 VYALS---NCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-KVNGVAFRLIP   90 (206)
Q Consensus        15 VF~vt---n~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l-~~~~~~f~~vP   90 (206)
                      ||+++   +.+++++-+... +++.+.++|=+.+||+.|..-|..+.-..    ..|..+..+.+..+ ++.|..+++||
T Consensus         1 v~VL~f~~~~~~eGI~si~~-~~~~~Vl~FE~edDA~RYa~lLEAqd~~~----p~Ve~id~~~i~~fC~~~gy~~~iv~   75 (86)
T PF11360_consen    1 VYVLLFNAGTETEGIYSIQN-KDRNVVLMFEDEDDAERYAGLLEAQDFPD----PTVEEIDPEEIEEFCRSAGYEYEIVP   75 (86)
T ss_pred             CEEEEecCCCCCCcEEEEEe-CCCCEEEEEccHHHHHHHHHHHHhcCCCC----CCeEEECHHHHHHHHHHCCceEEEEC
Confidence            56666   334444433323 23556667789999999999997654322    46999999999888 67889999998


Q ss_pred             CH
Q 028640           91 ES   92 (206)
Q Consensus        91 ~~   92 (206)
                      .-
T Consensus        76 ~g   77 (86)
T PF11360_consen   76 PG   77 (86)
T ss_pred             CC
Confidence            64

>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function

Probab=87.80  E-value=3.1  Score=31.07  Aligned_cols=56  Identities=29%  Similarity=0.482  Sum_probs=42.7

Q ss_pred             CcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEe---echhhh
Q 028640           13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPV---PLNKVF   77 (206)
Q Consensus        13 VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v---~L~~vy   77 (206)
                      =|=|++.+.-|+-++....  |..+.....|.++|++|+++    +|..   |.+|.++   .|-.+|
T Consensus         7 g~WYVLe~~pGEHLvleal--gqrls~iWtS~~~A~~F~~~----~p~~---GM~V~~Le~~aLKeaf   65 (103)
T PF11572_consen    7 GTWYVLEDEPGEHLVLEAL--GQRLSGIWTSRELAQAFLAR----HPEL---GMRVSPLESWALKEAF   65 (103)
T ss_dssp             SSEEEEESSTT-BEEEEET--TEEEEEEBSSHHHHHHHHHT----STSS-----EEEEE-SHHHHHHH
T ss_pred             cceEEecCCCCceeeHHHH--hhhHHhheecHHHHHHHHHh----Cccc---CcEeecchhHHHHHHH
Confidence            4779999999999988875  45566677999999999987    7886   5999998   455555

Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.

>PF07179 SseB: SseB protein N-terminal domain; InterPro: IPR009839 This family consists of several SseB proteins, which appear to be found exclusively in Enterobacteria

Probab=81.95  E-value=6.3  Score=29.11  Aligned_cols=58  Identities=29%  Similarity=0.403  Sum_probs=41.4

Q ss_pred             eeEe-eCCeeEeeeeecHHHHHHHHHHHhhcccccCCCCccCcEEEEeHHHHHHhhhcCCCCCCceEEEecCccc
Q 028640          123 LVLR-SQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFD  196 (206)
Q Consensus       123 Lti~-~~~~~~~PlFF~kedl~~~l~~~~~~~~~~~p~~~~~~I~V~~Le~vi~~m~~~~~~~~~~i~fiPp~~s  196 (206)
                      +++. .+|++++|+|.+.+.+.+...    .         ...+.++++.++++.+..  +. ..-|++=|-+.+
T Consensus        54 ~~~~~~dg~~~lpvFTs~e~l~~~~~----~---------~~~~~~~~~~~l~~~~~~--~~-~~giviNP~~~~  112 (124)
T PF07179_consen   54 LTLEDPDGERYLPVFTSWEELEKWYP----D---------ERPIIVVPFEDLLEMLLN--NE-GDGIVINPGTPS  112 (124)
T ss_pred             EEEEcCCCCEEEEEECCHHHHHhhhc----c---------cCceecccHHHHHHHhhc--CC-CcEEEEECCCCc
Confidence            4444 778999999999999998865    1         233788999999999981  11 245666565553

SseB is known to enhance serine-sensitivity in Escherichia coli [] and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon [].

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=80.09  E-value=4.7  Score=32.74  Aligned_cols=79  Identities=18%  Similarity=0.266  Sum_probs=60.0

Q ss_pred             CCcEEEEEcCCCCeEEEeccCCCceEEEEEe-------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhc----
Q 028640           12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF-------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLK----   80 (206)
Q Consensus        12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~-------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~----   80 (206)
                      ..|=|.+.|.+|+.+-.++-.|. .+-+||+       +-.+|.+|-+.+.+    ..+-|+.|.-||-|.+..++    
T Consensus         9 ~aPdF~Lp~~~g~~v~Lsd~~Gk-~VVLyFYPk~~TpgCT~Ea~~Frd~~~e----f~~~~a~V~GIS~Ds~~~~~~F~~   83 (157)
T COG1225           9 KAPDFELPDQDGETVSLSDLRGK-PVVLYFYPKDFTPGCTTEACDFRDLLEE----FEKLGAVVLGISPDSPKSHKKFAE   83 (157)
T ss_pred             cCCCeEeecCCCCEEehHHhcCC-cEEEEECCCCCCCcchHHHHHHHHHHHH----HHhCCCEEEEEeCCCHHHHHHHHH
Confidence            47999999999999877777654 5555555       55678888777633    33336999999999999984    


Q ss_pred             cCCeeEEEecCHHHH
Q 028640           81 VNGVAFRLIPESTQV   95 (206)
Q Consensus        81 ~~~~~f~~vP~~~qv   95 (206)
                      ..++.|.|..|...-
T Consensus        84 k~~L~f~LLSD~~~~   98 (157)
T COG1225          84 KHGLTFPLLSDEDGE   98 (157)
T ss_pred             HhCCCceeeECCcHH
Confidence            578999999998543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	206
4ev1_A	252	Anabaena Tic22 (Protein Transport) Length = 252		9e-10

>pdb|4EV1|A Chain A, Anabaena Tic22 (Protein Transport) Length = 252

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 104/219 (47%), Gaps = 36/219 (16%)
Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVS--------GAKTGKSLGLMCFKKEDAEALLH 52
           +S + I+E+L  VP+Y ++  NE+ + +S        G K G S+      +++A+A ++
Sbjct: 2   LSEQQIKEKLDSVPIYLVT--NEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFIN 59
Query: 53  QM---KSMDPAMRK--EGSRVVPVPLNKVFQL------KVNGVAFRLIPESTQVKNALRE 101
           ++   K+ DP M++  +  +V  VPL  ++Q         N + F   P   ++K A+  
Sbjct: 60  ELRNAKNKDPKMQEIVKSLQVTAVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDL 119
Query: 102 MEKAGFSDDAFAGVPVFQSR--------SLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQ 153
           + ++G   + F  VP+F  R         + + + N+   P+F  K+D +  L       
Sbjct: 120 LRQSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGLL------- 172
Query: 154 NKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIP 192
            ++ P     DIQV   + +++ +++   +  N VV +P
Sbjct: 173 GQVKPKHPKADIQVLDIDGVLQTLQDKNDTWLNQVVLVP 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
4ev1_A	252	Anabena TIC22; TIC22 fold, chaperon, protein trans	5e-46
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP} Length = 252

 Score =  151 bits (382), Expect = 5e-46
 Identities = 48/219 (21%), Positives = 98/219 (44%), Gaps = 32/219 (14%)

Query: 1   MSAEAIEERLAGVPVYALSNCNEEFVLVS------GAKTGKSLGLMCFKKEDAEALLHQM 54
           +S + I+E+L  VP+Y ++N     +         G K G S+      +++A+A ++++
Sbjct: 2   LSEQQIKEKLDSVPIYLVTNEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFINEL 61

Query: 55  K---SMDPAMRKEGS--RVVPVPLNKVFQL------KVNGVAFRLIPESTQVKNALREME 103
           +   + DP M++     +V  VPL  ++Q         N + F   P   ++K A+  + 
Sbjct: 62  RNAKNKDPKMQEIVKSLQVTAVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDLLR 121

Query: 104 KAGFSDDAFAGVPVFQSR--------SLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQNK 155
           ++G   + F  VP+F  R         + + + N+   P+F  K+D +  L +      K
Sbjct: 122 QSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGLLGQVKPKHPK 181

Query: 156 LNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPG 194
                   DIQV   + +++ +++   +  N VV +P  
Sbjct: 182 A-------DIQVLDIDGVLQTLQDKNDTWLNQVVLVPSP 213

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 36/273 (13%), Positives = 62/273 (22%), Gaps = 103/273 (37%)

Query: 14  PVYALSNC-----NEEFVLVSGAK-TGKS------------LGLMCFK--------KEDA 47
           P   L          + VL+ G   +GK+               M FK            
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 48  EALLHQMKS----MDPAMRKEGSRVVPVPLN----------------------------- 74
           E +L  ++     +DP           + L                              
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 75  ----KVFQL--KV------NGVAFRLIPESTQVKNALREMEKAGFSDD-------AFAGV 115
                 F L  K+        V   L   +T   +   +      + D        +   
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATT--THISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 116 PVFQSRS-------LVL-----RSQNKSYRPVFFRKEDLEKSLRRASSDQNKLNPA---- 159
                           L       ++       ++  + +K      S  N L PA    
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 160 -FRMGDIQVAVFEEIIKGMKESTTSA-WNDVVF 190
            F     +++VF      +     S  W DV+ 
Sbjct: 374 MFD----RLSVFPPSAH-IPTILLSLIWFDVIK 401

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
4ev1_A	252	Anabena TIC22; TIC22 fold, chaperon, protein trans	100.0
4e6z_A	279	Apicoplast TIC22, putative; TIC complex, import pr	100.0
4ev1_A	252	Anabena TIC22; TIC22 fold, chaperon, protein trans	99.17
4e6z_A	279	Apicoplast TIC22, putative; TIC complex, import pr	98.69
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	85.16
2z0r_A	103	Putative uncharacterized protein TTHA0547; alpha/b	82.15
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	80.43

>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}

Probab=100.00  E-value=2e-58  Score=395.54  Aligned_cols=196  Identities=23%  Similarity=0.432  Sum_probs=184.9

Q ss_pred             CCHHHHHHhcCCCcEEEEEcCCCCeEEEeccCC------CceEEEEEecHHHHHHHHHHHHh---cCc---cccCCCeEE
Q 028640            1 MSAEAIEERLAGVPVYALSNCNEEFVLVSGAKT------GKSLGLMCFKKEDAEALLHQMKS---MDP---AMRKEGSRV   68 (206)
Q Consensus         1 L~~~~I~ekL~~VPVF~vtn~~g~~~l~~~~~~------~~~v~~fF~~~~DA~~~l~~lk~---~~p---~~~~~~~kV   68 (206)
                      ||+++|+++|++||||+|||++|+||+++.+++      ++++++||||++||++||+++|+   +||   +++++ +||
T Consensus         2 L~e~eV~ekL~~VPVF~Itn~~G~Pll~~~~~~~~~~~~~~~V~~~F~s~~dA~~~L~~lk~~~~~np~~~~~~~~-~kV   80 (252)
T 4ev1_A            2 LSEQQIKEKLDSVPIYLVTNEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFINELRNAKNKDPKMQEIVKS-LQV   80 (252)
T ss_dssp             CCHHHHHHHHTTSEEEEEECTTCCBCEEECCCCTTSCCSCSEEEEEESCHHHHHHHHHHHHHCSSCCHHHHHHHTT-CEE
T ss_pred             CCHHHHHHHhcCCcEEEEECCCCCeEEEecCCccccccCCCeEEEEEecHHHHHHHHHHHHhccccCchhhhhccC-ceE
Confidence            899999999999999999999999999998762      57899999999999999999999   999   99988 999


Q ss_pred             EEeechhhhhh------ccCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeec------ceeEeeC--CeeEee
Q 028640           69 VPVPLNKVFQL------KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSR------SLVLRSQ--NKSYRP  134 (206)
Q Consensus        69 ~~v~L~~vy~l------~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~------~Lti~~~--~~~~~P  134 (206)
                      ++|+|++||++      +.+++.|+|+|+++||++|+.|++++|+.+++|.|||||+++      +||++++  |++|+|
T Consensus        81 ~~vsL~~vyql~~~~~~k~~~l~F~fvP~~~qV~~A~~Ll~~~Gq~~~~f~gVPvF~~~~~~~~~~Lti~~~~~~~~~iP  160 (252)
T 4ev1_A           81 TAVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDLLRQSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVP  160 (252)
T ss_dssp             EEEEHHHHHHHHHHTTTCTTCEEEEEECCHHHHHHHHHHHHTTTCCCSCCCSCEEEEEESSTTSCBCCEEETTTTEEEEE
T ss_pred             EEeeHHHHHHHHHhhccCCcCceEEEcCCHHHHHHHHHHHHHcCCCcccCCCccEEEEecCCCCccEEEEeCCCCCEEEe
Confidence            99999999999      467899999999999999999999999999999999999999      6999999  999999


Q ss_pred             eeecHHHHHHHHHHHhhcccccCCCCccCcEEEEeHHHHHHhhhcCCCCCCceEEEecCcccccCCcccc
Q 028640          135 VFFRKEDLEKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPNQA  204 (206)
Q Consensus       135 lFF~kedl~~~l~~~~~~~~~~~p~~~~~~I~V~~Le~vi~~m~~~~~~~~~~i~fiPp~~s~~~~~~~~  204 (206)
                      |||+|+||+++|+++++++    |+   ++|+|++|++||++|++++|++|++++||||++|++...+.+
T Consensus       161 lFF~KedL~~~l~~~kkq~----P~---~~I~V~~Le~vI~~m~~~~d~~~~~ivfiPs~es~e~i~~~~  223 (252)
T 4ev1_A          161 LFLSKQDAQGLLGQVKPKH----PK---ADIQVLDIDGVLQTLQDKNDTWLNQVVLVPSPESREYIRTLP  223 (252)
T ss_dssp             EESSHHHHHHHHHHHTTTC----TT---CEEEEEEHHHHHHHHHHCCCGGGGGEEEECCHHHHHHHHTSC
T ss_pred             eEecHHHHHHHHHHHHHhC----CC---CcEEEeeHHHHHHHHhcCcccccceEEEECCHHHHHHHHhcc
Confidence            9999999999999999986    54   779999999999999999999999999999999998776654

>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.3e-49  Score=345.97  Aligned_cols=185  Identities=22%  Similarity=0.315  Sum_probs=163.2

Q ss_pred             CHHHHHHhcCCCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHh-cCccccCCCeEEEEeechhhhhh-
Q 028640            2 SAEAIEERLAGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKS-MDPAMRKEGSRVVPVPLNKVFQL-   79 (206)
Q Consensus         2 ~~~~I~ekL~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~-~~p~~~~~~~kV~~v~L~~vy~l-   79 (206)
                      ++++|+|||++||||+|||++|+|+++++.  ++++++||||++||+++|+++++ ++|+++++ +||+++||++||++ 
T Consensus        66 ~e~~I~EKL~~VPVF~Itn~~G~Pll~~~~--~~~V~~fF~s~~DA~a~L~el~k~~~~~~~~~-~kV~pvsL~kvy~l~  142 (279)
T 4e6z_A           66 DERPIEEKLEVIPVFLITNYNSSPYIFQEN--EKQVCYMFLCPYDAENMLNDMIKYNGMKYNGN-IKIHNITMKKAYELM  142 (279)
T ss_dssp             --CCHHHHSTTSEEEEEECTTCCBCCEEET--TEEEEEEESSHHHHHHHHHHHHHHCHHHHTTS-CEEEEEEHHHHHHHH
T ss_pred             cHHhHHHHhcCCCEEEEEcCCCCEEEecCC--CCeEEEEECCHHHHHHHHHHHHhccCcccccC-ceEEEecHHHHHHHH
Confidence            689999999999999999999999999864  47899999999999999999865 55788888 99999999999987 


Q ss_pred             -----------------ccCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeEeeeeecHHHH
Q 028640           80 -----------------KVNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDL  142 (206)
Q Consensus        80 -----------------~~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~~PlFF~kedl  142 (206)
                                       +.+++.|+|+|+++||++|+.++++.|+   +++|||||++++||+++++++++|+||+||||
T Consensus       143 ~~~~~~~~~~i~~~~~~k~~~l~fr~vP~~~qV~~A~~ll~~~gq---~~~gVPVF~~~~Lti~k~~k~iiPlFF~keDL  219 (279)
T 4e6z_A          143 KEFLQLEKMEVNKEDSKKKQNIYWKLISSKRQLQNALYYLSFTKK---SELMYPVFYAENLYIQKDGSNIIPLFFDLEDL  219 (279)
T ss_dssp             HHHHHHHHC----------CCEEEEEECCHHHHHHHHTTSCTTTS---TTCCSEEEEETTCCEECSSSEEEEEESSHHHH
T ss_pred             hhcccccchhcccccccCCcceeeEecCCHHHHHHHHHHHHhcCC---cCCCccEEEEeeEEEeeCCeEEEeeEecHHHH
Confidence                             2467999999999999999999988776   47899999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccCCCCccCcEEEEeHHHHHHhhhcCCCCCCceEEEecCcccccCCcc
Q 028640          143 EKSLRRASSDQNKLNPAFRMGDIQVAVFEEIIKGMKESTTSAWNDVVFIPPGFDVSTNPN  202 (206)
Q Consensus       143 ~~~l~~~~~~~~~~~p~~~~~~I~V~~Le~vi~~m~~~~~~~~~~i~fiPp~~s~~~~~~  202 (206)
                      +++|++++++.    |...+++|+|++|+++|..|+      +++++||||++|++...+
T Consensus       220 ~~~l~q~~~~~----p~~~~~~I~V~~L~~ll~~~d------~~kivFIPs~eSlefi~~  269 (279)
T 4e6z_A          220 KEAIEEQKNKA----LSKVDYKIKVLNMVDLIFTED------HKKFGFVPSTQSVKYLDK  269 (279)
T ss_dssp             HHHHHHHHTTC----SSCCCCCEEEEEHHHHHTCSC------CTTEEEECCHHHHHHHHH
T ss_pred             HHHHHHhhhcC----CCCCCCceEEEhHHHHHhhCC------cCeEEEECCHHHHHHHHH
Confidence            99999998875    443378999999999998763      568999999999976543

>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}

Probab=99.17  E-value=4e-11  Score=102.58  Aligned_cols=94  Identities=18%  Similarity=0.254  Sum_probs=75.8

Q ss_pred             hcCCCcEEEEEcCCCCeEEEeccCC-CceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhh-c-cCC--
Q 028640            9 RLAGVPVYALSNCNEEFVLVSGAKT-GKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-K-VNG--   83 (206)
Q Consensus         9 kL~~VPVF~vtn~~g~~~l~~~~~~-~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l-~-~~~--   83 (206)
                      .+.|||||.+..+.+..+|+...++ ++.+.+|||+++|++++|+++++++|+     .+|.+++|+.++.. . +++  
T Consensus       129 ~f~gVPvF~~~~~~~~~~Lti~~~~~~~~~iPlFF~KedL~~~l~~~kkq~P~-----~~I~V~~Le~vI~~m~~~~d~~  203 (252)
T 4ev1_A          129 QFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGLLGQVKPKHPK-----ADIQVLDIDGVLQTLQDKNDTW  203 (252)
T ss_dssp             CCCSCEEEEEESSTTSCBCCEEETTTTEEEEEEESSHHHHHHHHHHHTTTCTT-----CEEEEEEHHHHHHHHHHCCCGG
T ss_pred             cCCCccEEEEecCCCCccEEEEeCCCCCEEEeeEecHHHHHHHHHHHHHhCCC-----CcEEEeeHHHHHHHHhcCcccc
Confidence            4568999999987777777664432 788999999999999999999999997     68999999999976 2 222  


Q ss_pred             -eeEEEecCHHHHHHHHHHHHHcCC
Q 028640           84 -VAFRLIPESTQVKNALREMEKAGF  107 (206)
Q Consensus        84 -~~f~~vP~~~qv~~A~~l~~~~g~  107 (206)
                       -.+.|||+.+.+++++++.+..|+
T Consensus       204 ~~~ivfiPs~es~e~i~~~~~~~~~  228 (252)
T 4ev1_A          204 LNQVVLVPSPESREYIRTLPKPPNT  228 (252)
T ss_dssp             GGGEEEECCHHHHHHHHTSCCCC--
T ss_pred             cceEEEECCHHHHHHHHhccccCCC
Confidence             478999999999999998654433

>4e6z_A Apicoplast TIC22, putative; TIC complex, import protein, transport protein; 2.15A {Plasmodium falciparum 3D7}

Probab=98.69  E-value=6.4e-08  Score=83.88  Aligned_cols=85  Identities=15%  Similarity=0.223  Sum_probs=67.3

Q ss_pred             CCCcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhhhccCCeeEEEec
Q 028640           11 AGVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQLKVNGVAFRLIP   90 (206)
Q Consensus        11 ~~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l~~~~~~f~~vP   90 (206)
                      .|||||.+.+     +.+. . +++.+.+|||+++|+++.+++.++++|.. .. .+|.+++|..+..-.. .-.|.|||
T Consensus       190 ~gVPVF~~~~-----Lti~-k-~~k~iiPlFF~keDL~~~l~q~~~~~p~~-~~-~~I~V~~L~~ll~~~d-~~kivFIP  259 (279)
T 4e6z_A          190 LMYPVFYAEN-----LYIQ-K-DGSNIIPLFFDLEDLKEAIEEQKNKALSK-VD-YKIKVLNMVDLIFTED-HKKFGFVP  259 (279)
T ss_dssp             CCSEEEEETT-----CCEE-C-SSSEEEEEESSHHHHHHHHHHHHTTCSSC-CC-CCEEEEEHHHHHTCSC-CTTEEEEC
T ss_pred             CCccEEEEee-----EEEe-e-CCeEEEeeEecHHHHHHHHHHhhhcCCCC-CC-CceEEEhHHHHHhhCC-cCeEEEEC
Confidence            5799999853     3333 3 46778889999999999999999999974 34 6899999988886433 23689999


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 028640           91 ESTQVKNALREMEKAGF  107 (206)
Q Consensus        91 ~~~qv~~A~~l~~~~g~  107 (206)
                      +.+.+++++++.  .|.
T Consensus       260 s~eSlefi~~l~--~g~  274 (279)
T 4e6z_A          260 STQSVKYLDKLN--IGT  274 (279)
T ss_dssp             CHHHHHHHHHHH--HSC
T ss_pred             CHHHHHHHHHHh--cCC
Confidence            999999999983  454

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=85.16  E-value=4.2  Score=29.63  Aligned_cols=125  Identities=12%  Similarity=0.111  Sum_probs=72.0

Q ss_pred             CCcEEEEEcCCCCeEEEeccCCCceEEEEEe------cHHHHHHHHHHHHhcCccccCCCeEEEEeechhhhh-h----c
Q 028640           12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCF------KKEDAEALLHQMKSMDPAMRKEGSRVVPVPLNKVFQ-L----K   80 (206)
Q Consensus        12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~------~~~DA~~~l~~lk~~~p~~~~~~~kV~~v~L~~vy~-l----~   80 (206)
                      .+|-|.++|.+|..+-...-. ++.+.++|+      ++.. ...+.++.+..++   .|++|..|+.+.--+ +    .
T Consensus         8 ~~p~f~l~~~~G~~~~l~~~~-gk~vll~F~a~~C~~C~~~-~~~l~~l~~~~~~---~~~~vv~v~~d~~~~~~~~~~~   82 (152)
T 2lrn_A            8 VAPAITGIDLKGNSVSLNDFK-GKYVLVDFWFAGCSWCRKE-TPYLLKTYNAFKD---KGFTIYGVSTDRREEDWKKAIE   82 (152)
T ss_dssp             ECCCCEEECSSSCEEESGGGT-TSEEEEEEECTTCTTHHHH-HHHHHHHHHHHTT---TTEEEEEEECCSCHHHHHHHHH
T ss_pred             cCCCceeEcCCCCEEeHHHcC-CCEEEEEEECCCChhHHHH-HHHHHHHHHHhcc---CCeEEEEEEccCCHHHHHHHHH
Confidence            378899999999988777654 455555555      2222 2233444333222   248999998874211 1    2


Q ss_pred             cCCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeEeeeeecHHHHHHHHHHHhhcc
Q 028640           81 VNGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSYRPVFFRKEDLEKSLRRASSDQ  153 (206)
Q Consensus        81 ~~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~~PlFF~kedl~~~l~~~~~~~  153 (206)
                      ..++.|.++.+.....  ..+.+.-|     ..++|-++    .+.++|+ ++-.+.+.+++++.++++.+..
T Consensus        83 ~~~~~~~~~~d~~~~~--~~~~~~~~-----v~~~P~~~----lid~~G~-i~~~~~~~~~l~~~l~~l~~~~  143 (152)
T 2lrn_A           83 EDKSYWNQVLLQKDDV--KDVLESYC-----IVGFPHII----LVDPEGK-IVAKELRGDDLYNTVEKFVNGA  143 (152)
T ss_dssp             HHTCCSEEEEECHHHH--HHHHHHTT-----CCSSCEEE----EECTTSE-EEEECCCTTHHHHHHHHHHTSS
T ss_pred             HhCCCCeEEecccchh--HHHHHHhC-----CCcCCeEE----EECCCCe-EEEeeCCHHHHHHHHHHHHhhc
Confidence            3456667776653221  12222212     34788532    2333443 5555678899999999987764

>2z0r_A Putative uncharacterized protein TTHA0547; alpha/beta protein, structural genomics, unknown function; 2.30A {Thermus thermophilus}

Probab=82.15  E-value=3.8  Score=29.94  Aligned_cols=50  Identities=30%  Similarity=0.359  Sum_probs=40.6

Q ss_pred             CcEEEEEcCCCCeEEEeccCCCceEEEEEecHHHHHHHHHHHHhcCccccCCCeEEEEe
Q 028640           13 VPVYALSNCNEEFVLVSGAKTGKSLGLMCFKKEDAEALLHQMKSMDPAMRKEGSRVVPV   71 (206)
Q Consensus        13 VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~~DA~~~l~~lk~~~p~~~~~~~kV~~v   71 (206)
                      =|.|.+.+..|+.++....  +....+.|.|.+.|++|+...    |. .  |++|.+.
T Consensus         7 g~wY~L~~~~gEhl~L~~l--g~rlAliwTs~~~A~~f~~~~----p~-~--Gm~V~~l   56 (103)
T 2z0r_A            7 GTWYVLEGDPGEHLVVEAL--GERLSGIWTSRELAEAFLAHH----PH-L--GMRVSAL   56 (103)
T ss_dssp             SCEEEEESSTTCCCEEEET--TEEEEEEBSCHHHHHHHHHTS----CS-S--CCEEEEE
T ss_pred             CCEEEecCCcCceeEEecc--CCceEEEEechHHHHHHHhhC----Cc-c--ccEEeec
Confidence            4899999999999998875  345666789999999999875    77 2  5888876

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=80.43  E-value=9.3  Score=27.77  Aligned_cols=129  Identities=14%  Similarity=0.200  Sum_probs=69.1

Q ss_pred             CCcEEEEEcCCCCeEEEeccCCCceEEEEEecH--HHHHH---HHHHHHhcCccccCCCeEEEEeechhhhhh-----cc
Q 028640           12 GVPVYALSNCNEEFVLVSGAKTGKSLGLMCFKK--EDAEA---LLHQMKSMDPAMRKEGSRVVPVPLNKVFQL-----KV   81 (206)
Q Consensus        12 ~VPVF~vtn~~g~~~l~~~~~~~~~v~~fF~~~--~DA~~---~l~~lk~~~p~~~~~~~kV~~v~L~~vy~l-----~~   81 (206)
                      ..|-|.++|.+|+.+-..... ++.+-++|+..  ..-..   .+.++....++   .|+.|..|+.+.--+.     +.
T Consensus        13 ~~p~~~l~~~~g~~~~l~~~~-gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~---~~v~~v~v~~d~~~~~~~~~~~~   88 (165)
T 3or5_A           13 PAPSFSGVTVDGKPFSSASLK-GKAYIVNFFATWCPPCRSEIPDMVQVQKTWAS---RGFTFVGIAVNEQLPNVKNYMKT   88 (165)
T ss_dssp             BCCCCEEECTTSCEEEGGGGT-TCEEEEEEECTTSHHHHHHHHHHHHHHHHHTT---TTEEEEEEECSCCHHHHHHHHHH
T ss_pred             CCCCceeeCCCCCEechhHcC-CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc---CCeEEEEEECCCCHHHHHHHHHH
Confidence            478999999999998777654 45555555521  01222   33344333222   2488988887753221     23


Q ss_pred             CCeeEEEecCHHHHHHHHHHHHHcCCCCCCCCCceeeeecceeEeeCCeeE--eeeeecHHHHHHHHHHHhhcc
Q 028640           82 NGVAFRLIPESTQVKNALREMEKAGFSDDAFAGVPVFQSRSLVLRSQNKSY--RPVFFRKEDLEKSLRRASSDQ  153 (206)
Q Consensus        82 ~~~~f~~vP~~~qv~~A~~l~~~~g~~~~~f~gVPvF~~~~Lti~~~~~~~--~PlFF~kedl~~~l~~~~~~~  153 (206)
                      .++.|.++-+..++..+.....     ..+..++|-++.    +.++|+-+  ..=+.+.+++.+.++++.++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~P~~~l----id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~  153 (165)
T 3or5_A           89 QGIIYPVMMATPELIRAFNGYI-----DGGITGIPTSFV----IDASGNVSGVIVGPRSKADFDRIVKMALGAK  153 (165)
T ss_dssp             HTCCSCEEECCHHHHHHHHTTS-----TTCSCSSSEEEE----ECTTSBEEEEECSCCCHHHHHHHHHHHHC--
T ss_pred             cCCCCceEecCHHHHHHHhhhh-----ccCCCCCCeEEE----ECCCCcEEEEEcCCCCHHHHHHHHHHHHhhh
Confidence            4556666666554333222110     013468885332    22333321  111357899999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00