Citrus Sinensis ID: 028660

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCEAIVLENINLQSEEDEPKALCNNVDDLAQRGSVFPRCP
cEEccccccccccccccccccEEEEccEEcccccEEEEccccEEEEEEEEEEcccccEEEcccccccccccEEEEEEEcEEEEcccccEEEEEEccccEEEEEEEEEEEEEEcccccEEEEccccccccccccccccEEEEEEEEEEEEEEEcccccEEEEccccccEEcEEEEEEEEEcccccccEEEEEccccccccEEccccc
cccccccccccccEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEccccccEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEcccccccEEEccccccccccccccccc
mvtapgdspntdgihvtntqniritsstigtgddcisivsgsqnvqaqditcgpghgisigslgkgnsnAYVSEVTVDgaklsetangvriktwqggsgyasniifqnidmvnvknpiiidqnycdqddpckeqssavhiknvvfknirgtsasdeavkldcsksypceaIVLENinlqseedepkalcnnvddlaqrgsvfprcp
mvtapgdspntdgihvtntqniritsstiGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDgaklsetangvriktwqggsgYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSsavhiknvvfknirgtsasdeavkldcSKSYPCEAIVLENINLQSEEDEPKALCNNVddlaqrgsvfprcp
MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCEAIVLENINLQSEEDEPKALCNNVDDLAQRGSVFPRCP
**************HVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCEAIVLENINL****************************
MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDD**K**SSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCEAIVLENINLQSEEDEPKALCNNVDDLAQRGSVFPRCP
**********TDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCEAIVLENINLQSEEDEPKALCNNVDDLAQRGSVFPRCP
*****GDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCEAIVLENINLQSEEDEPKALCNNVDDLAQRGSVFPRC*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCEAIVLENINLQSEEDEPKALCNNVDDLAQRGSVFPRCP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query206 2.2.26 [Sep-21-2011]
P35336467 Polygalacturonase OS=Acti N/A no 0.990 0.436 0.694 6e-77
Q8RY29433 Polygalacturonase ADPG2 O yes no 0.956 0.454 0.669 2e-71
P48978460 Polygalacturonase OS=Malu N/A no 0.966 0.432 0.673 6e-71
O23147431 Polygalacturonase ADPG1 O no no 0.961 0.459 0.651 7e-71
P05117457 Polygalacturonase-2 OS=So N/A no 0.990 0.446 0.640 3e-70
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.990 0.464 0.628 4e-66
Q02096462 Polygalacturonase OS=Pers N/A no 0.864 0.385 0.691 3e-64
P43212514 Polygalacturonase OS=Cryp N/A no 0.990 0.396 0.519 3e-56
Q94AJ5444 Probable polygalacturonas no no 0.864 0.400 0.595 4e-56
Q9FY19507 Polygalacturonase OS=Juni N/A no 0.864 0.351 0.561 1e-54
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function desciption
 Score =  286 bits (732), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 143/206 (69%), Positives = 170/206 (82%), Gaps = 2/206 (0%)

Query: 1   MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISI 60
           MVTAP +SPNTDGIHVT TQNI I+S  IGTGDDCISIV+GS+ V+  DITCGPGHGISI
Sbjct: 251 MVTAPENSPNTDGIHVTGTQNIHISSCVIGTGDDCISIVNGSRKVRVNDITCGPGHGISI 310

Query: 61  GSLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIII 120
           GSLG GNS A+VS+V V+GAKL  T NGVRIKTWQGGSG ASNI FQN++M NV+NPIII
Sbjct: 311 GSLGYGNSEAHVSDVVVNGAKLCGTTNGVRIKTWQGGSGSASNIKFQNVEMHNVENPIII 370

Query: 121 DQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCEAIVLENINLQS 180
           DQNYCDQD PC+EQSSAV +KNVV++NI+GT AS+ A+  DCSK +PC+ IVLE+++L+ 
Sbjct: 371 DQNYCDQDKPCQEQSSAVQVKNVVYQNIKGTCASNVAITFDCSKRFPCQGIVLEDVDLEI 430

Query: 181 EED-EPKALCNNVDDLAQRGSVFPRC 205
           E     KALCNNV +L++ G V P C
Sbjct: 431 EGGAAAKALCNNV-ELSETGVVSPHC 455
Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.
Actinidia deliciosa (taxid: 3627)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 Back     alignment and function description
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|P05117|PGLR_SOLLC Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query206
255577475 474 Polygalacturonase precursor, putative [R 0.995 0.432 0.725 5e-78
225450100 449 PREDICTED: polygalacturonase-like [Vitis 0.995 0.456 0.685 2e-75
224090225 443 predicted protein [Populus trichocarpa] 0.990 0.460 0.708 2e-75
297736266 456 unnamed protein product [Vitis vinifera] 0.995 0.449 0.685 2e-75
224138026 453 predicted protein [Populus trichocarpa] 0.985 0.448 0.697 2e-75
356498559 481 PREDICTED: polygalacturonase-like [Glyci 0.990 0.424 0.703 3e-75
548488 467 RecName: Full=Polygalacturonase; Short=P 0.990 0.436 0.694 3e-75
225441686 442 PREDICTED: polygalacturonase [Vitis vini 0.985 0.459 0.678 4e-75
224104077 376 predicted protein [Populus trichocarpa] 0.990 0.542 0.694 6e-75
7959983 463 polygalacturonase A [Actinidia chinensis 0.995 0.442 0.685 8e-75
>gi|255577475|ref|XP_002529616.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223530901|gb|EEF32761.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 151/208 (72%), Positives = 174/208 (83%), Gaps = 3/208 (1%)

Query: 1   MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISI 60
           +VT+P +SPNTDGIHVT+TQNI+IT   IGTGDDCISIVSGSQNVQA +ITCGPGHGISI
Sbjct: 268 IVTSPEESPNTDGIHVTSTQNIQITDCVIGTGDDCISIVSGSQNVQAMNITCGPGHGISI 327

Query: 61  GSLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIII 120
           GSLG GNS A+VS VT++GAKLS T NGVRIKTWQGGSG ASNI FQNI M NV NPIII
Sbjct: 328 GSLGSGNSKAHVSGVTINGAKLSGTTNGVRIKTWQGGSGNASNIKFQNIKMDNVSNPIII 387

Query: 121 DQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCEAIVLENINLQS 180
           DQNYCDQD PCKEQ SAV +K+VV+KNI+GTSAS  A+K DCS S+PCE I+L++++L+ 
Sbjct: 388 DQNYCDQDKPCKEQKSAVQVKDVVYKNIKGTSASHVAIKFDCSNSHPCEGILLQDVSLER 447

Query: 181 EE-DEPK-ALCNNVDDLAQRGSVFPRCP 206
           +  DE   ALCNNV D+AQ G V P CP
Sbjct: 448 QRGDETAIALCNNV-DVAQVGVVSPHCP 474

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225450100|ref|XP_002274775.1| PREDICTED: polygalacturonase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224090225|ref|XP_002308956.1| predicted protein [Populus trichocarpa] gi|222854932|gb|EEE92479.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297736266|emb|CBI24904.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224138026|ref|XP_002322711.1| predicted protein [Populus trichocarpa] gi|222867341|gb|EEF04472.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356498559|ref|XP_003518118.1| PREDICTED: polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|548488|sp|P35336.1|PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor gi|166325|gb|AAC14453.1| polygalacturonase [Actinidia deliciosa var. deliciosa] Back     alignment and taxonomy information
>gi|225441686|ref|XP_002282759.1| PREDICTED: polygalacturonase [Vitis vinifera] gi|297739724|emb|CBI29906.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224104077|ref|XP_002313308.1| predicted protein [Populus trichocarpa] gi|222849716|gb|EEE87263.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|7959983|gb|AAF71160.1|AF152758_1 polygalacturonase A [Actinidia chinensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query206
TAIR|locus:2054396433 PGAZAT "polygalacturonase absc 0.966 0.459 0.668 2.6e-70
TAIR|locus:2103478431 ADPG1 [Arabidopsis thaliana (t 0.961 0.459 0.651 4.9e-69
TAIR|locus:2077407439 QRT2 "QUARTET 2" [Arabidopsis 0.990 0.464 0.628 2.3e-64
TAIR|locus:2028844460 AT1G23460 [Arabidopsis thalian 0.980 0.439 0.512 4.2e-56
TAIR|locus:2026795468 AT1G70500 [Arabidopsis thalian 0.980 0.431 0.512 1.4e-55
TAIR|locus:2016314444 AT1G80170 [Arabidopsis thalian 0.975 0.452 0.539 1.6e-54
TAIR|locus:2043974405 AT2G43860 [Arabidopsis thalian 0.985 0.501 0.512 3.2e-49
TAIR|locus:2027534434 AT1G56710 [Arabidopsis thalian 0.859 0.407 0.536 1.6e-47
TAIR|locus:2051764392 AT2G43890 [Arabidopsis thalian 0.980 0.515 0.455 2.6e-47
TAIR|locus:2222657435 AT5G14650 [Arabidopsis thalian 0.893 0.422 0.510 8.8e-47
TAIR|locus:2054396 PGAZAT "polygalacturonase abscission zone A. thaliana" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 137/205 (66%), Positives = 164/205 (80%)

Query:     1 MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISI 60
             +VTAP DSPNTDGIH+TNTQNIR++ S IGTGDDCISI SGSQNVQ  DITCGPGHGISI
Sbjct:   232 VVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESGSQNVQINDITCGPGHGISI 291

Query:    61 GSLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIII 120
             GSLG  NS A+VS VTVDGAKLS T NGVRIKT+QGGSG ASNIIFQNI M NVKNPIII
Sbjct:   292 GSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNVKNPIII 351

Query:   121 DQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCEAIVLENINLQS 180
             DQ+YCD+   C  + SAV +KNVV+++I GTSAS+ A+  +CSK+YPC+ IVL+ +N++ 
Sbjct:   352 DQDYCDKSK-CTTEKSAVQVKNVVYRDISGTSASENAITFNCSKNYPCQGIVLDRVNIKG 410

Query:   181 EEDEPKALCNNVDDLAQRGSVFPRC 205
                  KA C N + +  +G+V P+C
Sbjct:   411 G----KATCTNAN-VVDKGAVLPQC 430
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS;IDA
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0009830 "cell wall modification involved in abscission" evidence=RCA;TAS
GO:0009901 "anther dehiscence" evidence=IMP
GO:0010047 "fruit dehiscence" evidence=IMP
GO:0010227 "floral organ abscission" evidence=IMP
TAIR|locus:2103478 ADPG1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077407 QRT2 "QUARTET 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028844 AT1G23460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026795 AT1G70500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016314 AT1G80170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043974 AT2G43860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027534 AT1G56710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051764 AT2G43890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222657 AT5G14650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.150.824
3rd Layer3.2.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028778001
SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (462 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query206
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 3e-93
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 3e-82
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 2e-76
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 2e-63
PLN03010409 PLN03010, PLN03010, polygalacturonase 2e-58
PLN02155394 PLN02155, PLN02155, polygalacturonase 2e-55
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 6e-52
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 7e-14
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information 
 Score =  278 bits (713), Expect = 3e-93
 Identities = 141/204 (69%), Positives = 165/204 (80%), Gaps = 6/204 (2%)

Query: 2   VTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIG 61
           VTAP DSPNTDGIH+TNTQNIR+++S IGTGDDCISI SGSQNVQ  DITCGPGHGISIG
Sbjct: 233 VTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIG 292

Query: 62  SLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIID 121
           SLG  NS A+VS VTVDGAKLS T NGVRIKT+QGGSG ASNIIFQNI M NVKNPIIID
Sbjct: 293 SLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIID 352

Query: 122 QNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCEAIVLENINLQSE 181
           Q+YCD+   C  Q SAV +KNVV++NI GTSASD A+  +CSK+YPC+ IVL+N+N++  
Sbjct: 353 QDYCDKSK-CTSQQSAVQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG 411

Query: 182 EDEPKALCNNVDDLAQRGSVFPRC 205
               KA C N  ++  +G+V P+C
Sbjct: 412 ----KATCTNA-NVVDKGAVSPQC 430

Length = 431
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 206
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN03010409 polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.88
PLN02218431 polygalacturonase ADPG 99.82
PLN03003456 Probable polygalacturonase At3g15720 99.81
PLN02793443 Probable polygalacturonase 99.8
PLN02155394 polygalacturonase 99.8
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.79
PLN03010409 polygalacturonase 99.77
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.77
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.26
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.2
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.29
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.19
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.06
smart00656190 Amb_all Amb_all domain. 97.97
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.77
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.69
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.59
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 97.5
smart00656190 Amb_all Amb_all domain. 97.48
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.43
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.27
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.24
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.11
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.03
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.82
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.76
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 95.83
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 94.1
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 93.63
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 92.96
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 92.18
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 91.29
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 88.14
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 80.55
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information 
Probab=100.00  E-value=8.1e-47  Score=332.88  Aligned_cols=205  Identities=47%  Similarity=0.762  Sum_probs=184.9

Q ss_pred             CeeCCCCCCCCCeeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEce
Q 028660            1 MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGA   80 (206)
Q Consensus         1 ~~~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~   80 (206)
                      +|.+|...+||||||+.+|+||+|+||+|.++||||++|++++||+|+||+|..+|||+|||++++++.+.|+||+|+||
T Consensus       178 ~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~  257 (456)
T PLN03003        178 RINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNC  257 (456)
T ss_pred             EEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEee
Confidence            47899999999999999999999999999999999999999999999999999999999999998765678999999999


Q ss_pred             EEecCCceeEEEEecCCCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCC--CCccCCceeEEeEEEEEeEEEEcCCCceE
Q 028660           81 KLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDD--PCKEQSSAVHIKNVVFKNIRGTSASDEAV  158 (206)
Q Consensus        81 ~~~~~~~gi~iks~~g~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~i~nIt~~ni~~~~~~~~~~  158 (206)
                      ++.++.+|+|||||.|+.|.++||+|+||+|+++.+||.|++.|.....  .+....+...|+||+|+||+++...+.++
T Consensus       258 ~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai  337 (456)
T PLN03003        258 NFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGV  337 (456)
T ss_pred             EEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceE
Confidence            9999999999999999999999999999999999999999999975321  12333456899999999999998777789


Q ss_pred             EEEcCCCCCEEcEEEEeEEEEecC----CCCceeeeeeccceeCceecC-CCC
Q 028660          159 KLDCSKSYPCEAIVLENINLQSEE----DEPKALCNNVDDLAQRGSVFP-RCP  206 (206)
Q Consensus       159 ~i~g~~~~~i~ni~~~Nv~v~~~~----~~~~~~c~~~~~~~~~~~~~~-~~~  206 (206)
                      .|.|.+..||+||+|+||.++...    ..+.+.|.|| .+...++.+| +|+
T Consensus       338 ~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv-~G~~~~~~~~~~C~  389 (456)
T PLN03003        338 DFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNV-RGASTIAVPGLECL  389 (456)
T ss_pred             EEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEecc-ccccCceECCCCcc
Confidence            999999999999999999998762    2468999999 8888898777 585

>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query206
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 7e-17
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 2e-15
1nhc_A336 Structural Insights Into The Processivity Of Endopo 3e-15
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 5e-14
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 9e-14
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 2e-12
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 4e-08
2uve_A608 Structure Of Yersinia Enterocolitica Family 28 Exop 2e-07
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 7e-07
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 2   VTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITC-----GPGH 56
           +  P  + NTDGI   +++NI I  S I TGDD ++I +     + ++I+      G GH
Sbjct: 192 IKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGH 251
Query: 57  GISIGSLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKN 116
           G+SIGS   G     V  VTVD  K++ T NG+RIK+ +  +G  + + + N+ M NV  
Sbjct: 252 GMSIGSETMG-----VYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAK 306
Query: 117 PIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCEAIVLENI 176
           PI+ID  Y       KE S+     ++ FK++  TS +   V L+   +     + ++N+
Sbjct: 307 PIVIDTVY-----EKKEGSNVPDWSDITFKDV--TSETKGVVVLNGENAKKPIEVTMKNV 359
Query: 177 NLQSE 181
            L S+
Sbjct: 360 KLTSD 364
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query206
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 3e-75
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 3e-72
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 4e-72
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 3e-71
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 1e-70
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-70
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 3e-69
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 2e-66
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 4e-57
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 4e-57
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 3e-16
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 2e-12
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 3e-11
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 2e-10
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 9e-05
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
 Score =  230 bits (588), Expect = 3e-75
 Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 20/196 (10%)

Query: 2   VTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSG-----SQNVQAQDITCGPGH 56
           +  P  + NTDGI   +++NI I  S I TGDD ++I +      ++N+       G GH
Sbjct: 192 IKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGH 251

Query: 57  GISIGSLGKGNSNAYVSEVTVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKN 116
           G+SIGS   G     V  VTVD  K++ T NG+RIK+ +  +G  + + + N+ M NV  
Sbjct: 252 GMSIGSETMG-----VYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAK 306

Query: 117 PIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCEAIVLENI 176
           PI+ID  Y       KE S+     ++ FK++   +     V L+   +     + ++N+
Sbjct: 307 PIVIDTVYE-----KKEGSNVPDWSDITFKDVTSETKG--VVVLNGENAKKPIEVTMKNV 359

Query: 177 NLQSEEDEPKALCNNV 192
            L S+         NV
Sbjct: 360 KLTSDS---TWQIKNV 372
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query206
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.94
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.92
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.91
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.85
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.85
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.85
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.85
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.84
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.84
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.84
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.82
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.81
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.81
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.8
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.79
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.74
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.58
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.54
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.52
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.39
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.29
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.11
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.99
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.77
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 98.75
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.88
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.77
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.54
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.51
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.5
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.48
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.44
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.44
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.4
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.4
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.36
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.35
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.3
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.28
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.19
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.19
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.17
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.17
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.04
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.94
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 96.91
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.8
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.6
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 96.34
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 96.25
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 94.38
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 93.96
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 92.33
2inu_A410 Insulin fructotransferase; right-handed parallel b 92.1
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 91.35
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 90.76
2inu_A410 Insulin fructotransferase; right-handed parallel b 90.57
2vfm_A559 Bifunctional tail protein; P22 tailspike protein, 90.53
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 90.5
2v5i_A559 Salmonella typhimurium DB7155 bacteriophage DET7 t 90.12
2xc1_A666 Bifunctional tail protein; hydrolase, endoglycosid 88.82
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 86.28
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 84.89
3riq_A543 Tailspike protein; right handed beta-helix, endorh 84.61
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
Probab=100.00  E-value=1.7e-40  Score=289.27  Aligned_cols=178  Identities=33%  Similarity=0.523  Sum_probs=163.5

Q ss_pred             CeeCCCCCCCCCeeecCCcccEEEEeeEEecCCceEEEcC-----CCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEE
Q 028660            1 MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVS-----GSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEV   75 (206)
Q Consensus         1 ~~~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~iks-----gs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI   75 (206)
                      +|++|..++|+||||+.+|+||+|+||+|.++||||++|+     +++||+|+||+|+.+|||+||||+.+     ++||
T Consensus       191 ~I~~~~~~~NtDGid~~~s~nV~I~n~~i~~gDDcIaiks~~~~~~s~nI~I~n~~~~~ghGisiGSe~~~-----v~nV  265 (376)
T 1bhe_A          191 TIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGSETMG-----VYNV  265 (376)
T ss_dssp             EEECCTTCSSCCSEEEESCEEEEEESCEEECSSCSEEEEECTTSCCEEEEEEEEEEECSSSCEEEEEEESS-----EEEE
T ss_pred             EEECCCCCCCCceEeecCCceEEEEeCEEecCCCeEEEcccCCCCCceEEEEEeeEEEccccEEeccCCcc-----EeeE
Confidence            4788999999999999999999999999999999999996     69999999999999999999999863     9999


Q ss_pred             EEEceEEecCCceeEEEEecCCCCeEEeEEEEeEEEeCCCccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCC
Q 028660           76 TVDGAKLSETANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASD  155 (206)
Q Consensus        76 ~~~n~~~~~~~~gi~iks~~g~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~  155 (206)
                      +|+||++.++.+|++||++.+++|.|+||+|+||+|+++..||.|++.|....     ....+.|+||+|+||+++.+  
T Consensus       266 ~v~n~~~~~t~~GirIKt~~g~~G~v~ni~f~ni~~~~v~~~i~i~~~y~~~~-----~~~~~~i~ni~~~ni~gt~~--  338 (376)
T 1bhe_A          266 TVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKE-----GSNVPDWSDITFKDVTSETK--  338 (376)
T ss_dssp             EEEEEEEESCSEEEEEECCTTTCCEEEEEEEEEEEEESCSEEEEEETTSSCCC-----CCCCCEEEEEEEEEEEECSC--
T ss_pred             EEEeeEEeCCCcEEEEEEecCCCceEeeEEEEeEEEeCCCceEEEEeeccCCC-----CCcCcEEEEEEEEEEEEEec--
Confidence            99999999999999999999999999999999999999999999999886532     23457899999999999976  


Q ss_pred             ceEEEEcCCCCCEEcEEEEeEEEEecCCCCceeeeeec
Q 028660          156 EAVKLDCSKSYPCEAIVLENINLQSEEDEPKALCNNVD  193 (206)
Q Consensus       156 ~~~~i~g~~~~~i~ni~~~Nv~v~~~~~~~~~~c~~~~  193 (206)
                      .++.|.|.++.||++|+|+||+++...   .|.|+|++
T Consensus       339 ~~~~l~g~~~~~~~~I~l~nv~l~~~~---~~~~~~~~  373 (376)
T 1bhe_A          339 GVVVLNGENAKKPIEVTMKNVKLTSDS---TWQIKNVN  373 (376)
T ss_dssp             CEEEEECTTCSSCEEEEEEEEECCTTC---EEEEESEE
T ss_pred             ceEEEEeCCCCCeeeEEEEeEEEecCC---CceEEEEE
Confidence            478999999999999999999998764   79999993
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2vfm_A Bifunctional tail protein; P22 tailspike protein, salmonella bacteriophage P22, protein folding, protein stability; 1.50A {Enterobacteria phage P22} PDB: 2vfp_A 2vfo_A 2vfq_A 2vfn_A 1tsp_A 1qrb_A 1qq1_A 1qrc_A 1tyu_A* 1tyv_A 1tyw_A* 1tyx_A* 1qa2_A 1clw_A 1qa3_A 1qa1_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2v5i_A Salmonella typhimurium DB7155 bacteriophage DET7 tailspike; O-antigen binding and hydrolysis, beta-helix, viral protein; 1.60A {Bacteriophage} Back     alignment and structure
>2xc1_A Bifunctional tail protein; hydrolase, endoglycosidase, salmonella phage P22; HET: PE4; 1.65A {Enterobacteria phage P22} PDB: 1lkt_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase, lipopolysaccharide, viral protein; 1.50A {Siphovirus 9na} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 206
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 1e-45
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-44
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 3e-44
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-43
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 2e-42
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 4e-42
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-39
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 2e-38
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

 Score =  152 bits (386), Expect = 1e-45
 Identities = 27/205 (13%), Positives = 50/205 (24%), Gaps = 17/205 (8%)

Query: 1   MVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQ-AQDITCGPGHGIS 59
                     TDG  +    N  +        DD I I     +V  A    C     I 
Sbjct: 164 YKQVGAFFFQTDGPEIYP--NSVVHDVFWHVNDDAIKIYYSGASVSRATIWKCHNDPIIQ 221

Query: 60  IGSLGKGNSNAYVSEVTVDGAKLSETANGV----------RIKTWQGGSGYASNIIFQNI 109
           +G   +  S   +  + V   +  ++   V                  S  + ++   N+
Sbjct: 222 MGWTSRDISGVTIDTLNVIHTRYIKSETVVPSAIIGASPFYASGMSPDSRKSISMTVSNV 281

Query: 110 DMVNVKNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSKSYPCE 169
               +   +          +        V   + +  N  GT  S        +      
Sbjct: 282 VCEGLCPSLFRITPLQ---NYKNFVVKNVAFPDGLQTNSIGTGESIIPAASGLTMGLAIS 338

Query: 170 AIVLENINLQSE-EDEPKALCNNVD 193
           A  +    +  E          N+D
Sbjct: 339 AWTIGGQKVTMENFQANSLGQFNID 363
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query206
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.92
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.82
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.79
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.78
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.77
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.77
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.77
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.75
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.23
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.46
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.25
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.2
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.78
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.45
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.3
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.28
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.28
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.24
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.16
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 95.75
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 95.51
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 94.94
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 94.32
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 90.9
d1tywa_554 P22 tailspike protein {Salmonella phage P22 [TaxId 90.44
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 90.4
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 86.32
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=100.00  E-value=1e-40  Score=284.41  Aligned_cols=182  Identities=28%  Similarity=0.495  Sum_probs=161.0

Q ss_pred             CCCCCCCeeecCCcccEEEEeeEEecCCceEEEcCCCeeEEEEeeEEeCCCeeEEEeccCCCCCCcEEEEEEEceEEecC
Q 028660            6 GDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIGSLGKGNSNAYVSEVTVDGAKLSET   85 (206)
Q Consensus         6 ~~~~n~DGidi~~s~nV~I~n~~i~~~DD~i~iksgs~nI~I~nc~~~~~~gi~igS~~~gg~~~~i~nI~~~n~~~~~~   85 (206)
                      ..++|+||||+.+|+||+|+||+|.++||||++|+ .+||+|+||+|+.+||+++||.++. ..+.++||+|+||++.++
T Consensus       153 ~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks-~~ni~i~n~~c~~ghG~sigslG~~-~~~~v~nV~v~n~~~~~t  230 (339)
T d1ia5a_         153 NGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNS-GENIYFSGGYCSGGHGLSIGSVGGR-SDNTVKNVTFVDSTIINS  230 (339)
T ss_dssp             TTCCSCCSEEEESCEEEEEESCEEECSSCSEEESS-EEEEEEESCEEESSSCEEEEEECSS-SCCEEEEEEEEEEEEESC
T ss_pred             cCCCCCCccccCCCCeEEEeeeEEEcCCCeEEecC-ccEEEEEEeEEeccccceecccccC-ccccEEEEEEECCcccCC
Confidence            46789999999999999999999999999999998 5799999999999999998887543 235799999999999999


Q ss_pred             CceeEEEEecCCCCeEEeEEEEeEEEeCC-CccEEEEeEeCCCCCCCccCCceeEEeEEEEEeEEEEcCCCceEEEEcCC
Q 028660           86 ANGVRIKTWQGGSGYASNIIFQNIDMVNV-KNPIIIDQNYCDQDDPCKEQSSAVHIKNVVFKNIRGTSASDEAVKLDCSK  164 (206)
Q Consensus        86 ~~gi~iks~~g~~g~i~nI~~~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~~  164 (206)
                      .+|++||++.+++|.|+||+||||+|+++ ++||.|+++|.+...   .+....+|+||+|+||+++...+.+..+.|.+
T Consensus       231 ~~GirIKt~~g~~G~v~nV~f~ni~~~~v~~~pI~I~~~Y~~~~~---~~~~~v~i~nI~~~Ni~gt~~~~~~~~~~~~~  307 (339)
T d1ia5a_         231 DNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSS---TPTTGVPITDFVLDNVHGSVVSSGTNILISCG  307 (339)
T ss_dssp             SEEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEEEEEETCTTS---CCCSSSCEEEEEEEEEEEEECTTSEEEEEECC
T ss_pred             cceeEEeeeCCCCEEEEEEEEEEEEEeccccccEEEEeecCCCCC---CCCCCcEEEeEEEEeEEEEecccCceEEEeCC
Confidence            99999999999999999999999999998 579999999976432   23345689999999999998877788888888


Q ss_pred             CCCEEcEEEEeEEEEecCCCCceeeeeecc
Q 028660          165 SYPCEAIVLENINLQSEEDEPKALCNNVDD  194 (206)
Q Consensus       165 ~~~i~ni~~~Nv~v~~~~~~~~~~c~~~~~  194 (206)
                      +.||+||+|+||++++.+  +.+.|+|++.
T Consensus       308 ~~p~~ni~~~nV~itg~~--~~~~C~nv~~  335 (339)
T d1ia5a_         308 SGSCSDWTWTDVSVSGGK--TSSKCTNVPS  335 (339)
T ss_dssp             TTCEEEEEEEEEEEESSB--CCSCCBSCCT
T ss_pred             CCCEeceEEEeEEEcCCC--cceEeECCCc
Confidence            999999999999998764  5678999953
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure